AMF_634 81138712516f70e6d1e16ac52db48ee8 158 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 27 147 2.7E-27 T 13-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 SMART SM01185 68 122 2.6E-17 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 Gene3D G3DSA:2.40.50.140 129 187 6.8E-20 T 13-10-2018 AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 TIGRFAM TIGR00038 efp: translation elongation factor P 5 186 9.5E-64 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 Gene3D G3DSA:2.40.50.140 65 128 7.9E-16 T 13-10-2018 AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 PIRSF PIRSF005901 1 187 5.1E-60 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 ProSitePatterns PS01275 Elongation factor P signature. 151 170 - T 13-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 SUPERFAMILY SSF50249 66 127 1.46E-12 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 6 58 4.2E-20 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 Hamap MF_00141 Elongation factor P [efp]. 2 186 39.392 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 Pfam PF09285 Elongation factor P, C-terminal 130 185 1.6E-20 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 122 3.3E-15 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 SUPERFAMILY SSF50249 129 186 4.28E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 SUPERFAMILY SSF50104 6 63 1.38E-15 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 Gene3D G3DSA:2.30.30.30 5 63 8.6E-19 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMF_345 f01a5c48cf2935e7d13a212c4be402ba 188 SMART SM00841 130 185 3.0E-26 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 Gene3D G3DSA:1.10.1420.10 394 509 1.2E-76 T 13-10-2018 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 SUPERFAMILY SSF52540 573 800 1.77E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 Gene3D G3DSA:3.40.50.300 574 814 4.2E-93 T 13-10-2018 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 Pfam PF00488 MutS domain V 614 798 1.6E-78 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 Gene3D G3DSA:1.10.1420.10 273 565 1.2E-76 T 13-10-2018 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 Pfam PF05190 MutS family domain IV 437 524 6.9E-14 T 13-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 Gene3D G3DSA:3.30.420.110 131 265 4.2E-28 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 Gene3D G3DSA:3.40.1170.10 1 125 1.3E-42 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 Pfam PF01624 MutS domain I 11 123 1.8E-37 T 13-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 SMART SM00533 290 597 1.2E-75 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 692 708 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 SUPERFAMILY SSF48334 274 571 9.16E-75 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 SUPERFAMILY SSF55271 4 119 1.96E-38 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 11 806 3.1E-239 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 PIRSF PIRSF037677 1 810 1.9E-167 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 SMART SM00534 611 798 1.2E-108 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 SUPERFAMILY SSF53150 118 273 1.24E-35 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 Pfam PF05188 MutS domain II 132 259 8.2E-23 T 13-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AMF_301 19028ce7218f5a931a6302acf4ce7de8 819 Pfam PF05192 MutS domain III 276 565 2.2E-38 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMF_253 11d5beb35fe392f099de3cb7c8cc798f 115 Pfam PF00550 Phosphopantetheine attachment site 47 108 5.2E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMF_253 11d5beb35fe392f099de3cb7c8cc798f 115 ProSitePatterns PS00012 Phosphopantetheine attachment site. 67 82 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site AMF_253 11d5beb35fe392f099de3cb7c8cc798f 115 Hamap MF_01217 Acyl carrier protein [acpP]. 35 112 14.671 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMF_253 11d5beb35fe392f099de3cb7c8cc798f 115 Gene3D G3DSA:1.10.1200.10 30 114 1.2E-25 T 13-10-2018 IPR036736 ACP-like superfamily AMF_253 11d5beb35fe392f099de3cb7c8cc798f 115 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 71 108 4.0E-14 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMF_253 11d5beb35fe392f099de3cb7c8cc798f 115 SUPERFAMILY SSF47336 34 110 1.83E-14 T 13-10-2018 IPR036736 ACP-like superfamily AMF_185 de91f2b00fca14945128905843d70fbd 690 Pfam PF03764 Elongation factor G, domain IV 479 597 3.5E-41 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMF_185 de91f2b00fca14945128905843d70fbd 690 SUPERFAMILY SSF50447 264 404 4.89E-33 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMF_185 de91f2b00fca14945128905843d70fbd 690 SUPERFAMILY SSF54980 402 480 1.98E-22 T 13-10-2018 IPR035647 EF-G domain III/V-like AMF_185 de91f2b00fca14945128905843d70fbd 690 Gene3D G3DSA:3.30.230.10 484 686 8.6E-85 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_185 de91f2b00fca14945128905843d70fbd 690 Hamap MF_00054_B Elongation factor G [fusA]. 6 690 106.155 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMF_185 de91f2b00fca14945128905843d70fbd 690 SMART SM00889 480 598 1.1E-61 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMF_185 de91f2b00fca14945128905843d70fbd 690 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 180 2.0E-34 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_185 de91f2b00fca14945128905843d70fbd 690 Gene3D G3DSA:3.40.50.300 3 291 2.6E-111 T 13-10-2018 AMF_185 de91f2b00fca14945128905843d70fbd 690 TIGRFAM TIGR00484 EF-G: translation elongation factor G 4 690 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMF_185 de91f2b00fca14945128905843d70fbd 690 Pfam PF00679 Elongation factor G C-terminus 600 686 1.3E-28 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AMF_185 de91f2b00fca14945128905843d70fbd 690 Pfam PF03144 Elongation factor Tu domain 2 324 391 2.9E-11 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMF_185 de91f2b00fca14945128905843d70fbd 690 SUPERFAMILY SSF52540 6 281 7.65E-107 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_185 de91f2b00fca14945128905843d70fbd 690 SMART SM00838 600 687 1.5E-47 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AMF_185 de91f2b00fca14945128905843d70fbd 690 Pfam PF00009 Elongation factor Tu GTP binding domain 9 281 2.5E-69 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_185 de91f2b00fca14945128905843d70fbd 690 Pfam PF14492 Elongation Factor G, domain II 404 477 9.3E-31 T 13-10-2018 AMF_185 de91f2b00fca14945128905843d70fbd 690 Gene3D G3DSA:2.40.30.10 292 405 4.5E-41 T 13-10-2018 AMF_185 de91f2b00fca14945128905843d70fbd 690 SUPERFAMILY SSF54980 600 688 2.21E-27 T 13-10-2018 IPR035647 EF-G domain III/V-like AMF_185 de91f2b00fca14945128905843d70fbd 690 PRINTS PR00315 GTP-binding elongation factor signature 130 139 1.8E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_185 de91f2b00fca14945128905843d70fbd 690 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.8E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_185 de91f2b00fca14945128905843d70fbd 690 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.8E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_185 de91f2b00fca14945128905843d70fbd 690 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.8E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_185 de91f2b00fca14945128905843d70fbd 690 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.8E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_185 de91f2b00fca14945128905843d70fbd 690 Gene3D G3DSA:3.30.70.870 406 483 1.9E-29 T 13-10-2018 AMF_185 de91f2b00fca14945128905843d70fbd 690 SUPERFAMILY SSF54211 479 599 7.84E-41 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_185 de91f2b00fca14945128905843d70fbd 690 Gene3D G3DSA:3.30.70.240 604 674 8.6E-85 T 13-10-2018 AMF_185 de91f2b00fca14945128905843d70fbd 690 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site AMF_201 5e0e0148d37617cf21f2ba979b9a1efd 257 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 250 3.6E-48 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMF_201 5e0e0148d37617cf21f2ba979b9a1efd 257 Pfam PF03309 Type III pantothenate kinase 3 208 1.1E-50 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMF_201 5e0e0148d37617cf21f2ba979b9a1efd 257 SUPERFAMILY SSF53067 127 253 6.04E-26 T 13-10-2018 AMF_201 5e0e0148d37617cf21f2ba979b9a1efd 257 Gene3D G3DSA:3.30.420.40 1 89 2.7E-22 T 13-10-2018 AMF_201 5e0e0148d37617cf21f2ba979b9a1efd 257 Gene3D G3DSA:3.30.420.40 93 257 2.3E-33 T 13-10-2018 AMF_201 5e0e0148d37617cf21f2ba979b9a1efd 257 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 256 27.423 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMF_201 5e0e0148d37617cf21f2ba979b9a1efd 257 SUPERFAMILY SSF53067 1 123 4.77E-23 T 13-10-2018 AMF_324 e27f0a38b2ce707190dde6b8b66eb506 128 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 14 53 1.1E-6 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_324 e27f0a38b2ce707190dde6b8b66eb506 128 SUPERFAMILY SSF63562 14 77 1.92E-12 T 13-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMF_324 e27f0a38b2ce707190dde6b8b66eb506 128 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 11.05 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_324 e27f0a38b2ce707190dde6b8b66eb506 128 Gene3D G3DSA:3.90.940.10 13 97 2.1E-11 T 13-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMF_324 e27f0a38b2ce707190dde6b8b66eb506 128 SMART SM01409 10 60 1.2E-6 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMF_324 e27f0a38b2ce707190dde6b8b66eb506 128 Pfam PF01192 RNA polymerase Rpb6 14 55 1.3E-7 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMF_131 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 104 124 5.4E-45 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_131 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 50 67 5.4E-45 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_131 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 160 186 5.4E-45 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_131 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 125 145 5.4E-45 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_131 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 67 87 5.4E-45 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_131 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 208 232 5.4E-45 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_131 51d7492720f98d827585d04714dafe68 250 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 50 231 1.9E-64 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_131 51d7492720f98d827585d04714dafe68 250 Pfam PF01578 Cytochrome C assembly protein 26 188 8.3E-26 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMF_570 91baceda29bb88fd496c45411fb69b79 292 SMART SM01232 143 232 1.5E-36 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMF_570 91baceda29bb88fd496c45411fb69b79 292 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 14 128 3.4E-28 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMF_570 91baceda29bb88fd496c45411fb69b79 292 SUPERFAMILY SSF81624 15 152 9.16E-32 T 13-10-2018 IPR035937 MutM-like, N-terminal AMF_570 91baceda29bb88fd496c45411fb69b79 292 Pfam PF06827 Zinc finger found in FPG and IleRS 252 278 3.2E-7 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AMF_570 91baceda29bb88fd496c45411fb69b79 292 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 14 278 1.0E-72 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMF_570 91baceda29bb88fd496c45411fb69b79 292 SUPERFAMILY SSF57716 228 278 1.54E-12 T 13-10-2018 AMF_570 91baceda29bb88fd496c45411fb69b79 292 Gene3D G3DSA:3.20.190.10 14 143 7.6E-29 T 13-10-2018 IPR035937 MutM-like, N-terminal AMF_570 91baceda29bb88fd496c45411fb69b79 292 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 143 229 3.8E-21 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMF_570 91baceda29bb88fd496c45411fb69b79 292 Gene3D G3DSA:1.10.8.50 144 275 1.2E-39 T 13-10-2018 AMF_570 91baceda29bb88fd496c45411fb69b79 292 SMART SM00898 15 129 1.5E-32 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMF_570 91baceda29bb88fd496c45411fb69b79 292 SUPERFAMILY SSF46946 144 231 3.93E-24 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMF_174 32f1ae7f3f7a598617be1d8c5b07df57 542 SUPERFAMILY SSF161098 7 256 2.99E-29 T 13-10-2018 IPR035906 MetI-like superfamily AMF_174 32f1ae7f3f7a598617be1d8c5b07df57 542 Gene3D G3DSA:1.10.3720.10 280 536 1.8E-30 T 13-10-2018 IPR035906 MetI-like superfamily AMF_174 32f1ae7f3f7a598617be1d8c5b07df57 542 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 64 250 2.2E-6 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMF_174 32f1ae7f3f7a598617be1d8c5b07df57 542 SUPERFAMILY SSF161098 285 523 3.92E-29 T 13-10-2018 IPR035906 MetI-like superfamily AMF_174 32f1ae7f3f7a598617be1d8c5b07df57 542 Gene3D G3DSA:1.10.3720.10 6 263 4.6E-36 T 13-10-2018 IPR035906 MetI-like superfamily AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 46 219 2.1E-48 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 8 417 6.3E-191 T 13-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 SUPERFAMILY SSF140490 327 421 1.44E-34 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 Gene3D G3DSA:1.20.1440.230 329 430 9.4E-35 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 Pfam PF10531 SLBB domain 242 293 2.4E-9 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 SUPERFAMILY SSF142019 7 240 1.23E-83 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 333 414 4.9E-28 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 Gene3D G3DSA:3.10.20.600 232 328 3.9E-42 T 13-10-2018 AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 SMART SM00928 331 376 2.4E-25 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 Gene3D G3DSA:3.40.50.11540 51 231 3.1E-79 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 SUPERFAMILY SSF142984 241 326 5.23E-25 T 13-10-2018 AMF_555 1c5f019d57315a31ae34b93f3fae9497 430 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 344 355 - T 13-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 Pfam PF00285 Citrate synthase, C-terminal domain 55 417 1.3E-120 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 PIRSF PIRSF001369 47 427 2.8E-136 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 Gene3D G3DSA:1.10.230.10 272 380 4.8E-124 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 Gene3D G3DSA:1.10.580.10 65 404 4.8E-124 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 23 425 8.1E-156 T 13-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 SUPERFAMILY SSF48256 18 424 8.64E-139 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 Gene3D G3DSA:2.20.28.60 9 59 5.8E-13 T 13-10-2018 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 ProSitePatterns PS00480 Citrate synthase signature. 307 319 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 PRINTS PR00143 Citrate synthase signature 245 273 8.9E-47 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 PRINTS PR00143 Citrate synthase signature 363 379 8.9E-47 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 PRINTS PR00143 Citrate synthase signature 300 320 8.9E-47 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 PRINTS PR00143 Citrate synthase signature 171 184 8.9E-47 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 PRINTS PR00143 Citrate synthase signature 223 238 8.9E-47 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AMF_896 d2ee21db634c18a842a7d6a45ac88ebc 427 PRINTS PR00143 Citrate synthase signature 383 397 8.9E-47 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 Gene3D G3DSA:3.30.70.270 290 454 1.3E-56 T 13-10-2018 AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 SUPERFAMILY SSF52172 2 132 6.4E-39 T 13-10-2018 IPR011006 CheY-like superfamily AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 292 449 2.3E-50 T 13-10-2018 IPR000160 GGDEF domain AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 Pfam PF00072 Response regulator receiver domain 5 117 1.5E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 Pfam PF00072 Response regulator receiver domain 159 270 2.1E-10 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 SMART SM00448 157 270 5.8E-7 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 SMART SM00448 3 117 6.0E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 SMART SM00267 283 453 1.4E-51 T 13-10-2018 IPR000160 GGDEF domain AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 SUPERFAMILY SSF55073 299 447 1.33E-45 T 13-10-2018 IPR029787 Nucleotide cyclase AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 Gene3D G3DSA:3.40.50.12740 1 289 1.2E-82 T 13-10-2018 AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 SUPERFAMILY SSF52172 149 289 1.22E-16 T 13-10-2018 IPR011006 CheY-like superfamily AMF_349 880ad402c4836a2de1a02f0a339fc85e 455 Pfam PF00990 Diguanylate cyclase, GGDEF domain 295 447 9.9E-45 T 13-10-2018 IPR000160 GGDEF domain AMF_957 70f5b5fa7249b148e98d0c8a467a68f6 190 Pfam PF01782 RimM N-terminal domain 28 105 1.8E-16 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 AMF_957 70f5b5fa7249b148e98d0c8a467a68f6 190 Pfam PF05239 PRC-barrel domain 112 183 2.1E-6 T 13-10-2018 IPR027275 PRC-barrel domain AMF_957 70f5b5fa7249b148e98d0c8a467a68f6 190 Gene3D G3DSA:2.40.30.60 24 109 3.7E-16 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 AMF_957 70f5b5fa7249b148e98d0c8a467a68f6 190 Gene3D G3DSA:2.30.30.240 110 186 5.0E-8 T 13-10-2018 AMF_957 70f5b5fa7249b148e98d0c8a467a68f6 190 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 25 183 3.9E-35 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMF_957 70f5b5fa7249b148e98d0c8a467a68f6 190 SUPERFAMILY SSF50346 115 183 1.33E-10 T 13-10-2018 IPR011033 PRC-barrel-like superfamily AMF_957 70f5b5fa7249b148e98d0c8a467a68f6 190 SUPERFAMILY SSF50447 24 108 2.83E-15 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMF_957 70f5b5fa7249b148e98d0c8a467a68f6 190 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 25 185 21.369 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMF_252 873a5929b4bf8482b6dc21c6b4e38f59 427 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 11 424 3.5E-187 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AMF_252 873a5929b4bf8482b6dc21c6b4e38f59 427 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 11 262 8.5E-52 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMF_252 873a5929b4bf8482b6dc21c6b4e38f59 427 Gene3D G3DSA:3.40.47.10 272 416 4.1E-56 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AMF_252 873a5929b4bf8482b6dc21c6b4e38f59 427 SUPERFAMILY SSF53901 230 425 4.37E-70 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AMF_252 873a5929b4bf8482b6dc21c6b4e38f59 427 PIRSF PIRSF000447 7 427 2.4E-174 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AMF_252 873a5929b4bf8482b6dc21c6b4e38f59 427 SMART SM00825 Beta-ketoacyl synthase 12 427 2.2E-15 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMF_252 873a5929b4bf8482b6dc21c6b4e38f59 427 Gene3D G3DSA:3.40.47.10 3 270 7.2E-83 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AMF_252 873a5929b4bf8482b6dc21c6b4e38f59 427 SUPERFAMILY SSF53901 10 267 1.55E-71 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AMF_252 873a5929b4bf8482b6dc21c6b4e38f59 427 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 270 384 1.3E-40 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMF_932 5709ae217c9ea31349e9e855bef23e16 241 SUPERFAMILY SSF69593 17 223 4.32E-25 T 13-10-2018 AMF_932 5709ae217c9ea31349e9e855bef23e16 241 Pfam PF01553 Acyltransferase 77 191 2.8E-14 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMF_932 5709ae217c9ea31349e9e855bef23e16 241 SMART SM00563 83 195 1.0E-20 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 25 829 14.914 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Gene3D G3DSA:2.40.30.10 503 614 2.8E-36 T 13-10-2018 AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 ProSitePatterns PS01176 Initiation factor 2 signature. 782 804 - T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Gene3D G3DSA:3.40.50.300 328 502 3.9E-69 T 13-10-2018 AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Pfam PF11987 Translation-initiation factor 2 629 721 6.8E-32 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Gene3D G3DSA:2.40.30.10 733 830 3.3E-24 T 13-10-2018 AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 248 829 4.0E-197 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 SUPERFAMILY SSF52540 330 501 2.36E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 334 486 2.9E-32 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 SUPERFAMILY SSF52156 628 738 6.28E-32 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Pfam PF00009 Elongation factor Tu GTP binding domain 336 491 1.8E-32 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Gene3D G3DSA:3.40.50.10050 626 732 7.9E-34 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 SUPERFAMILY SSF50447 504 587 1.31E-22 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMF_542 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 SUPERFAMILY SSF50447 733 829 1.51E-25 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMF_286 1a9ad601bbfd4c986501af5409d3c025 170 Pfam PF02132 RecR protein 13 49 1.1E-10 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger AMF_286 1a9ad601bbfd4c986501af5409d3c025 170 SUPERFAMILY SSF111304 1 169 4.71E-58 T 13-10-2018 IPR023627 Recombination protein RecR AMF_286 1a9ad601bbfd4c986501af5409d3c025 170 ProSitePatterns PS01300 RecR protein signature. 28 49 - T 13-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 AMF_286 1a9ad601bbfd4c986501af5409d3c025 170 Hamap MF_00017 Recombination protein RecR [recR]. 1 169 74.794 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AMF_286 1a9ad601bbfd4c986501af5409d3c025 170 Gene3D G3DSA:3.40.1360.10 48 168 8.8E-40 T 13-10-2018 AMF_286 1a9ad601bbfd4c986501af5409d3c025 170 SMART SM00493 51 136 0.0024 T 13-10-2018 IPR006171 TOPRIM domain AMF_286 1a9ad601bbfd4c986501af5409d3c025 170 Pfam PF13662 Toprim domain 51 142 1.5E-22 T 13-10-2018 IPR006171 TOPRIM domain AMF_435 2c39f9bf2fafca8a9dedd967b4190ff4 1047 Gene3D G3DSA:3.20.20.220 131 514 4.3E-118 T 13-10-2018 AMF_435 2c39f9bf2fafca8a9dedd967b4190ff4 1047 SUPERFAMILY SSF81935 9 177 5.49E-59 T 13-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMF_435 2c39f9bf2fafca8a9dedd967b4190ff4 1047 PIRSF PIRSF000197 2 1043 0.0 T 13-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMF_435 2c39f9bf2fafca8a9dedd967b4190ff4 1047 Pfam PF00171 Aldehyde dehydrogenase family 565 1028 1.7E-121 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMF_435 2c39f9bf2fafca8a9dedd967b4190ff4 1047 SUPERFAMILY SSF53720 532 1031 4.97E-130 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMF_435 2c39f9bf2fafca8a9dedd967b4190ff4 1047 Gene3D G3DSA:3.40.309.10 800 995 3.9E-155 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMF_435 2c39f9bf2fafca8a9dedd967b4190ff4 1047 Pfam PF01619 Proline dehydrogenase 185 478 2.6E-83 T 13-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 AMF_435 2c39f9bf2fafca8a9dedd967b4190ff4 1047 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 65 176 4.4E-39 T 13-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMF_435 2c39f9bf2fafca8a9dedd967b4190ff4 1047 SUPERFAMILY SSF51730 179 521 3.92E-103 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like AMF_435 2c39f9bf2fafca8a9dedd967b4190ff4 1047 Gene3D G3DSA:3.40.605.10 537 1028 3.9E-155 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMF_435 2c39f9bf2fafca8a9dedd967b4190ff4 1047 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 514 1024 2.3E-197 T 13-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMF_538 a7927376991588e99abb66317c1ea2f0 781 Gene3D G3DSA:3.40.50.300 464 678 2.0E-72 T 13-10-2018 AMF_538 a7927376991588e99abb66317c1ea2f0 781 SUPERFAMILY SSF81923 15 153 3.66E-43 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMF_538 a7927376991588e99abb66317c1ea2f0 781 Pfam PF07724 AAA domain (Cdc48 subfamily) 510 672 7.0E-44 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_538 a7927376991588e99abb66317c1ea2f0 781 Gene3D G3DSA:1.10.1780.10 14 153 3.2E-26 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMF_538 a7927376991588e99abb66317c1ea2f0 781 Gene3D G3DSA:1.10.8.60 376 462 1.7E-28 T 13-10-2018 AMF_538 a7927376991588e99abb66317c1ea2f0 781 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 586 604 1.2E-33 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AMF_538 a7927376991588e99abb66317c1ea2f0 781 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 619 633 1.2E-33 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AMF_538 a7927376991588e99abb66317c1ea2f0 781 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 515 533 1.2E-33 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AMF_538 a7927376991588e99abb66317c1ea2f0 781 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 557 575 1.2E-33 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AMF_538 a7927376991588e99abb66317c1ea2f0 781 SUPERFAMILY SSF52540 461 741 6.12E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_538 a7927376991588e99abb66317c1ea2f0 781 SMART SM01086 679 768 1.1E-15 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AMF_538 a7927376991588e99abb66317c1ea2f0 781 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 679 759 8.0E-14 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AMF_538 a7927376991588e99abb66317c1ea2f0 781 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 327 339 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMF_538 a7927376991588e99abb66317c1ea2f0 781 Gene3D G3DSA:1.10.8.60 679 780 3.8E-18 T 13-10-2018 AMF_538 a7927376991588e99abb66317c1ea2f0 781 SMART SM00382 511 662 5.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_538 a7927376991588e99abb66317c1ea2f0 781 SMART SM00382 231 377 3.5E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_538 a7927376991588e99abb66317c1ea2f0 781 Gene3D G3DSA:3.40.50.300 181 375 3.4E-58 T 13-10-2018 AMF_538 a7927376991588e99abb66317c1ea2f0 781 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 236 349 7.1E-11 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_538 a7927376991588e99abb66317c1ea2f0 781 SUPERFAMILY SSF52540 194 437 4.95E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_538 a7927376991588e99abb66317c1ea2f0 781 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 542 560 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 Gene3D G3DSA:1.10.10.350 426 525 3.1E-15 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 61 525 28.19 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 70 81 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 PRINTS PR00987 Glutamyl-tRNA synthetase signature 67 79 6.4E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 PRINTS PR00987 Glutamyl-tRNA synthetase signature 81 92 6.4E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 PRINTS PR00987 Glutamyl-tRNA synthetase signature 255 263 6.4E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 PRINTS PR00987 Glutamyl-tRNA synthetase signature 239 249 6.4E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 PRINTS PR00987 Glutamyl-tRNA synthetase signature 96 109 6.4E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 64 363 9.2E-91 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 SUPERFAMILY SSF48163 359 525 1.44E-29 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 SUPERFAMILY SSF52374 64 355 2.95E-101 T 13-10-2018 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 64 525 2.4E-141 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMF_572 61edaba18f808688d67cfa46f6bee4d2 527 Gene3D G3DSA:3.40.50.620 63 374 2.4E-122 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_886 256de25de1dab4b970b778fe418d8ac8 174 Pfam PF03449 Transcription elongation factor, N-terminal 18 86 3.5E-28 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMF_886 256de25de1dab4b970b778fe418d8ac8 174 SUPERFAMILY SSF54534 93 173 8.76E-17 T 13-10-2018 AMF_886 256de25de1dab4b970b778fe418d8ac8 174 PIRSF PIRSF006092 13 173 3.9E-43 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMF_886 256de25de1dab4b970b778fe418d8ac8 174 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 30 60 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMF_886 256de25de1dab4b970b778fe418d8ac8 174 SUPERFAMILY SSF46557 16 88 1.83E-25 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMF_886 256de25de1dab4b970b778fe418d8ac8 174 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 18 172 1.2E-50 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 AMF_886 256de25de1dab4b970b778fe418d8ac8 174 Gene3D G3DSA:3.10.50.30 88 174 1.4E-23 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMF_886 256de25de1dab4b970b778fe418d8ac8 174 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 93 172 5.6E-26 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMF_886 256de25de1dab4b970b778fe418d8ac8 174 Gene3D G3DSA:1.10.287.180 15 87 3.3E-27 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMF_886 256de25de1dab4b970b778fe418d8ac8 174 Hamap MF_00105 Transcription elongation factor GreA [greA]. 15 172 28.054 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 PRINTS PR00481 Cytosol aminopeptidase signature 351 372 1.9E-51 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 PRINTS PR00481 Cytosol aminopeptidase signature 314 335 1.9E-51 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 PRINTS PR00481 Cytosol aminopeptidase signature 402 417 1.9E-51 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 PRINTS PR00481 Cytosol aminopeptidase signature 292 309 1.9E-51 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 PRINTS PR00481 Cytosol aminopeptidase signature 373 393 1.9E-51 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 SUPERFAMILY SSF53187 212 531 1.6E-116 T 13-10-2018 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 377 384 - T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 Gene3D G3DSA:3.40.630.10 208 531 2.3E-125 T 13-10-2018 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 43 533 33.228 T 13-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 SUPERFAMILY SSF52949 56 200 1.71E-20 T 13-10-2018 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 59 173 7.9E-9 T 13-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 Gene3D G3DSA:3.40.220.10 45 207 5.9E-20 T 13-10-2018 AMF_1057 05cb6b1dafe95329f5dbeddefd73baaf 534 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 216 524 3.4E-120 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMF_725 72f4bc90c46c356daa3c63274fda842e 549 SUPERFAMILY SSF54849 136 204 4.81E-21 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMF_725 72f4bc90c46c356daa3c63274fda842e 549 Gene3D G3DSA:3.50.7.10 172 381 2.3E-189 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily AMF_725 72f4bc90c46c356daa3c63274fda842e 549 Gene3D G3DSA:1.10.560.10 12 525 2.3E-189 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMF_725 72f4bc90c46c356daa3c63274fda842e 549 Gene3D G3DSA:3.30.260.10 137 412 2.3E-189 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMF_725 72f4bc90c46c356daa3c63274fda842e 549 TIGRFAM TIGR02348 GroEL: chaperonin GroL 12 530 1.0E-189 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMF_725 72f4bc90c46c356daa3c63274fda842e 549 Hamap MF_00600 60 kDa chaperonin [groL]. 1 549 35.447 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMF_725 72f4bc90c46c356daa3c63274fda842e 549 PRINTS PR00298 60kDa chaperonin signature 82 109 1.0E-64 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMF_725 72f4bc90c46c356daa3c63274fda842e 549 PRINTS PR00298 60kDa chaperonin signature 352 377 1.0E-64 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMF_725 72f4bc90c46c356daa3c63274fda842e 549 PRINTS PR00298 60kDa chaperonin signature 268 291 1.0E-64 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMF_725 72f4bc90c46c356daa3c63274fda842e 549 PRINTS PR00298 60kDa chaperonin signature 400 421 1.0E-64 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMF_725 72f4bc90c46c356daa3c63274fda842e 549 PRINTS PR00298 60kDa chaperonin signature 26 52 1.0E-64 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMF_725 72f4bc90c46c356daa3c63274fda842e 549 ProSitePatterns PS00296 Chaperonins cpn60 signature. 407 418 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMF_725 72f4bc90c46c356daa3c63274fda842e 549 SUPERFAMILY SSF48592 8 525 8.16E-51 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMF_725 72f4bc90c46c356daa3c63274fda842e 549 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 528 2.0E-94 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMF_725 72f4bc90c46c356daa3c63274fda842e 549 SUPERFAMILY SSF52029 186 378 2.79E-75 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily AMF_847 e080e2fa5d56373713f8162706b7a7dc 610 Pfam PF01434 Peptidase family M41 387 586 4.2E-72 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMF_847 e080e2fa5d56373713f8162706b7a7dc 610 SUPERFAMILY SSF140990 408 595 8.37E-69 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMF_847 e080e2fa5d56373713f8162706b7a7dc 610 Gene3D G3DSA:1.20.58.760 403 599 1.9E-69 T 13-10-2018 AMF_847 e080e2fa5d56373713f8162706b7a7dc 610 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 601 36.222 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMF_847 e080e2fa5d56373713f8162706b7a7dc 610 Gene3D G3DSA:3.40.50.300 142 328 5.4E-69 T 13-10-2018 AMF_847 e080e2fa5d56373713f8162706b7a7dc 610 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 109 588 1.4E-223 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMF_847 e080e2fa5d56373713f8162706b7a7dc 610 SMART SM00382 190 329 4.0E-22 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_847 e080e2fa5d56373713f8162706b7a7dc 610 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 195 325 9.3E-45 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_847 e080e2fa5d56373713f8162706b7a7dc 610 SUPERFAMILY SSF52540 152 397 4.17E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_847 e080e2fa5d56373713f8162706b7a7dc 610 ProSitePatterns PS00674 AAA-protein family signature. 297 315 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMF_847 e080e2fa5d56373713f8162706b7a7dc 610 Gene3D G3DSA:1.10.8.60 329 402 6.6E-30 T 13-10-2018 AMF_1016 ab123aa3eaa72241e4b677fe37fe23d3 218 SUPERFAMILY SSF50715 6 196 1.74E-52 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMF_1016 ab123aa3eaa72241e4b677fe37fe23d3 218 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 104 189 1.1E-25 T 13-10-2018 IPR020057 Ribosomal protein L25, beta domain AMF_1016 ab123aa3eaa72241e4b677fe37fe23d3 218 Gene3D G3DSA:2.170.120.20 102 197 2.1E-24 T 13-10-2018 IPR037121 Ribosomal protein L25, C-terminal AMF_1016 ab123aa3eaa72241e4b677fe37fe23d3 218 Gene3D G3DSA:2.40.240.10 4 99 8.1E-26 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMF_1016 ab123aa3eaa72241e4b677fe37fe23d3 218 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 11 186 1.7E-47 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMF_1016 ab123aa3eaa72241e4b677fe37fe23d3 218 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 7 99 2.0E-48 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMF_1016 ab123aa3eaa72241e4b677fe37fe23d3 218 Pfam PF01386 Ribosomal L25p family 11 96 2.0E-22 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMF_1016 ab123aa3eaa72241e4b677fe37fe23d3 218 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 7 189 28.112 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMF_346 f1affe6d91f35d2d6e97e13e5375fc19 253 Pfam PF00459 Inositol monophosphatase family 49 206 1.7E-16 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMF_346 f1affe6d91f35d2d6e97e13e5375fc19 253 SUPERFAMILY SSF56655 7 247 2.23E-35 T 13-10-2018 AMF_346 f1affe6d91f35d2d6e97e13e5375fc19 253 PRINTS PR00377 Inositol monophosphatase superfamily signature 179 200 3.5E-7 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMF_346 f1affe6d91f35d2d6e97e13e5375fc19 253 PRINTS PR00377 Inositol monophosphatase superfamily signature 84 100 3.5E-7 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMF_346 f1affe6d91f35d2d6e97e13e5375fc19 253 PRINTS PR00377 Inositol monophosphatase superfamily signature 133 156 3.5E-7 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMF_346 f1affe6d91f35d2d6e97e13e5375fc19 253 Gene3D G3DSA:3.30.540.10 3 142 2.0E-24 T 13-10-2018 AMF_183 26594be140311a1b0d8f5357bc0199bb 160 Pfam PF00177 Ribosomal protein S7p/S5e 1 153 6.0E-52 T 13-10-2018 IPR023798 Ribosomal protein S7 domain AMF_183 26594be140311a1b0d8f5357bc0199bb 160 Gene3D G3DSA:1.10.455.10 2 160 8.2E-48 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AMF_183 26594be140311a1b0d8f5357bc0199bb 160 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 160 30.254 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMF_183 26594be140311a1b0d8f5357bc0199bb 160 PIRSF PIRSF002122 12 160 2.2E-48 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 AMF_183 26594be140311a1b0d8f5357bc0199bb 160 SUPERFAMILY SSF47973 1 153 4.19E-49 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AMF_183 26594be140311a1b0d8f5357bc0199bb 160 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 159 3.0E-52 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 8 147 4.5E-40 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 SUPERFAMILY SSF51735 8 148 1.3E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 Gene3D G3DSA:3.40.50.720 2 149 4.2E-51 T 13-10-2018 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 PIRSF PIRSF000102 3 316 4.1E-102 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 151 310 4.7E-28 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 Gene3D G3DSA:3.90.110.10 151 316 6.3E-60 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 7 313 5.2E-114 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 Hamap MF_00487 Malate dehydrogenase [mdh]. 5 317 44.131 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 PRINTS PR00086 L-lactate dehydrogenase signature 175 188 1.5E-26 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 PRINTS PR00086 L-lactate dehydrogenase signature 8 32 1.5E-26 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 PRINTS PR00086 L-lactate dehydrogenase signature 145 163 1.5E-26 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 PRINTS PR00086 L-lactate dehydrogenase signature 33 57 1.5E-26 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 PRINTS PR00086 L-lactate dehydrogenase signature 121 141 1.5E-26 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_421 9431622d2bfd3dd5af61d7966bb66c3b 317 SUPERFAMILY SSF56327 150 314 2.74E-52 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMF_712 1584d92519bb46937eab8ae284ab3444 327 Pfam PF00107 Zinc-binding dehydrogenase 155 263 9.3E-20 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMF_712 1584d92519bb46937eab8ae284ab3444 327 SMART SM00829 14 325 1.9E-13 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMF_712 1584d92519bb46937eab8ae284ab3444 327 Gene3D G3DSA:3.90.180.10 18 321 2.2E-90 T 13-10-2018 AMF_712 1584d92519bb46937eab8ae284ab3444 327 SUPERFAMILY SSF51735 115 270 1.63E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_712 1584d92519bb46937eab8ae284ab3444 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 90 2.7E-10 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMF_712 1584d92519bb46937eab8ae284ab3444 327 Gene3D G3DSA:3.40.50.720 127 271 2.2E-90 T 13-10-2018 AMF_712 1584d92519bb46937eab8ae284ab3444 327 SUPERFAMILY SSF50129 5 148 9.28E-34 T 13-10-2018 IPR011032 GroES-like superfamily AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 13-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 237 250 - T 13-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 Gene3D G3DSA:3.40.50.261 124 289 7.8E-69 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 SMART SM00881 4 100 2.8E-35 T 13-10-2018 IPR003781 CoA-binding GO:0048037 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 289 41.724 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 SUPERFAMILY SSF52210 123 284 4.84E-51 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 Pfam PF00549 CoA-ligase 151 269 1.2E-17 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 5.3E-36 T 13-10-2018 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 5.3E-36 T 13-10-2018 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 5.3E-36 T 13-10-2018 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 PRINTS PR01798 Succinyl-CoA synthase signature 241 258 5.3E-36 T 13-10-2018 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 Pfam PF02629 CoA binding domain 6 99 8.2E-30 T 13-10-2018 IPR003781 CoA-binding GO:0048037 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 Gene3D G3DSA:3.40.50.720 2 123 6.3E-50 T 13-10-2018 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 PIRSF PIRSF001553 1 292 5.7E-127 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 288 3.5E-137 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMF_167 1b63a0a88d6b130b75d875f890ba1e65 294 SUPERFAMILY SSF51735 1 122 5.42E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 Pfam PF07498 Rho termination factor, N-terminal domain 44 82 5.9E-7 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 Gene3D G3DSA:3.40.50.300 169 459 1.5E-123 T 13-10-2018 AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 SUPERFAMILY SSF68912 40 85 1.26E-7 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 Gene3D G3DSA:1.10.720.10 39 85 1.2E-8 T 13-10-2018 AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 Pfam PF07497 Rho termination factor, RNA-binding domain 92 162 2.1E-25 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 SMART SM00357 91 157 4.7E-12 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 Gene3D G3DSA:2.40.50.140 86 162 1.2E-27 T 13-10-2018 AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 Hamap MF_01884 Transcription termination factor Rho [rho]. 40 460 204.696 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 201 405 1.7E-27 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 TIGRFAM TIGR00767 rho: transcription termination factor Rho 42 459 5.9E-193 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 SUPERFAMILY SSF50249 90 161 2.51E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 SMART SM00959 44 86 1.7E-9 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 SMART SM00382 212 392 1.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_758 3c5fd3bd6e374d8095a28cec08e110c6 460 SUPERFAMILY SSF52540 130 413 4.54E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_823 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 Pfam PF02569 Pantoate-beta-alanine ligase 25 296 1.6E-77 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMF_823 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 47 108 1.8E-8 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMF_823 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 Hamap MF_00158 Pantothenate synthetase [panC]. 24 298 31.914 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMF_823 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 SUPERFAMILY SSF52374 19 298 1.34E-82 T 13-10-2018 AMF_823 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 23 298 2.2E-69 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMF_823 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 Gene3D G3DSA:3.40.50.620 16 193 1.5E-58 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_823 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 Gene3D G3DSA:3.30.1300.10 198 299 1.0E-18 T 13-10-2018 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 281 338 4.6E-25 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 SUPERFAMILY SSF56553 75 203 3.92E-30 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 Gene3D G3DSA:2.170.120.12 75 202 2.0E-69 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 SMART SM00662 45 259 1.4E-56 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 25 347 33.21 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 Gene3D G3DSA:1.10.150.20 277 359 4.2E-36 T 13-10-2018 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 SUPERFAMILY SSF47789 281 356 6.8E-27 T 13-10-2018 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 51 253 1.4E-20 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 Gene3D G3DSA:3.30.1360.10 44 253 2.0E-69 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 46 346 1.7E-94 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 287 356 1.0E-35 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 SUPERFAMILY SSF55257 29 256 6.08E-26 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_672 815c4f1a68f3a3aacefadaa241f2889f 366 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 84 177 4.0E-15 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_110 bb0de13950b712c1bfb72695806f9159 695 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 633 5.8E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMF_110 bb0de13950b712c1bfb72695806f9159 695 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 647 5.8E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMF_110 bb0de13950b712c1bfb72695806f9159 695 PRINTS PR00344 Bacterial sensor protein C-terminal signature 648 666 5.8E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMF_110 bb0de13950b712c1bfb72695806f9159 695 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 578 686 1.8E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMF_110 bb0de13950b712c1bfb72695806f9159 695 PIRSF PIRSF037532 8 690 9.1E-188 T 13-10-2018 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator AMF_110 bb0de13950b712c1bfb72695806f9159 695 Pfam PF00512 His Kinase A (phospho-acceptor) domain 468 535 7.2E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_110 bb0de13950b712c1bfb72695806f9159 695 SMART SM00304 293 348 2.9E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMF_110 bb0de13950b712c1bfb72695806f9159 695 Gene3D G3DSA:3.30.565.10 540 687 1.2E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_110 bb0de13950b712c1bfb72695806f9159 695 SUPERFAMILY SSF47384 462 535 5.69E-9 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMF_110 bb0de13950b712c1bfb72695806f9159 695 SUPERFAMILY SSF55874 535 680 4.45E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_110 bb0de13950b712c1bfb72695806f9159 695 SMART SM00388 466 537 6.5E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_110 bb0de13950b712c1bfb72695806f9159 695 Gene3D G3DSA:1.10.287.130 456 534 1.2E-12 T 13-10-2018 AMF_110 bb0de13950b712c1bfb72695806f9159 695 SMART SM00387 577 689 1.4E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMF_211 e9a41b9e76d9f05f6294008d0255ed27 157 Pfam PF01722 BolA-like protein 74 145 2.7E-18 T 13-10-2018 IPR002634 BolA protein AMF_211 e9a41b9e76d9f05f6294008d0255ed27 157 SUPERFAMILY SSF82657 60 148 1.12E-19 T 13-10-2018 IPR036065 BolA-like superfamily AMF_211 e9a41b9e76d9f05f6294008d0255ed27 157 Gene3D G3DSA:3.30.300.90 61 150 5.8E-18 T 13-10-2018 AMF_992 2c8789c06f0889776701d5cd6cd44fd2 806 Gene3D G3DSA:3.40.50.300 326 560 1.4E-43 T 13-10-2018 AMF_992 2c8789c06f0889776701d5cd6cd44fd2 806 SUPERFAMILY SSF52540 117 556 9.96E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_992 2c8789c06f0889776701d5cd6cd44fd2 806 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 124 568 4.1E-150 T 13-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 AMF_981 248bde609ceac08850b09dced9714f0b 165 Gene3D G3DSA:3.30.420.10 2 162 6.2E-38 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMF_981 248bde609ceac08850b09dced9714f0b 165 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 141 153 4.5E-22 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_981 248bde609ceac08850b09dced9714f0b 165 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 62 78 4.5E-22 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_981 248bde609ceac08850b09dced9714f0b 165 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 84 100 4.5E-22 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_981 248bde609ceac08850b09dced9714f0b 165 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 108 127 4.5E-22 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_981 248bde609ceac08850b09dced9714f0b 165 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 4.5E-22 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_981 248bde609ceac08850b09dced9714f0b 165 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 153 1.8E-38 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_981 248bde609ceac08850b09dced9714f0b 165 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 158 2.0E-31 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_981 248bde609ceac08850b09dced9714f0b 165 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 156 32.56 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_981 248bde609ceac08850b09dced9714f0b 165 SUPERFAMILY SSF53098 2 159 2.28E-37 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AMF_519 a31ef0568958795307c2aa507bee3c9b 338 Pfam PF00472 RF-1 domain 195 305 3.6E-42 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMF_519 a31ef0568958795307c2aa507bee3c9b 338 Gene3D G3DSA:3.30.70.1660 96 325 2.7E-95 T 13-10-2018 AMF_519 a31ef0568958795307c2aa507bee3c9b 338 SMART SM00937 49 162 2.7E-43 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMF_519 a31ef0568958795307c2aa507bee3c9b 338 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 1 332 2.0E-140 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMF_519 a31ef0568958795307c2aa507bee3c9b 338 Gene3D G3DSA:3.30.160.20 193 288 2.7E-95 T 13-10-2018 AMF_519 a31ef0568958795307c2aa507bee3c9b 338 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 333 35.475 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMF_519 a31ef0568958795307c2aa507bee3c9b 338 Gene3D G3DSA:1.20.58.410 1 88 4.2E-11 T 13-10-2018 AMF_519 a31ef0568958795307c2aa507bee3c9b 338 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 212 228 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMF_519 a31ef0568958795307c2aa507bee3c9b 338 Pfam PF03462 PCRF domain 2 187 4.0E-51 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMF_519 a31ef0568958795307c2aa507bee3c9b 338 SUPERFAMILY SSF75620 2 333 2.62E-122 T 13-10-2018 AMF_511 77133869a70fcabfc2bd2e61dc78646a 238 Pfam PF11967 Recombination protein O N terminal 1 66 3.4E-8 T 13-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal AMF_511 77133869a70fcabfc2bd2e61dc78646a 238 Pfam PF02565 Recombination protein O C terminal 80 221 4.1E-15 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMF_511 77133869a70fcabfc2bd2e61dc78646a 238 ProDom PD202328 DNA REPAIR RECOMBINATION RECO DAMAGE O O RECO-RELATED RECOMBINATIONAL RP549 125 231 2.0E-53 T 13-10-2018 AMF_511 77133869a70fcabfc2bd2e61dc78646a 238 SUPERFAMILY SSF57863 79 190 1.26E-9 T 13-10-2018 IPR037278 ARFGAP/RecO-like zinc finger AMF_511 77133869a70fcabfc2bd2e61dc78646a 238 Hamap MF_00201 DNA repair protein RecO [recO]. 1 236 14.129 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMF_511 77133869a70fcabfc2bd2e61dc78646a 238 TIGRFAM TIGR00613 reco: DNA repair protein RecO 4 231 1.2E-22 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Gene3D G3DSA:3.30.1480.10 8 145 4.8E-16 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SMART SM00316 153 220 1.6E-10 T 13-10-2018 IPR022967 RNA-binding domain, S1 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 385 434 1.6E-16 T 13-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SMART SM00322 250 323 0.32 T 13-10-2018 IPR004087 K Homology domain GO:0003676 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SMART SM00322 324 431 0.29 T 13-10-2018 IPR004087 K Homology domain GO:0003676 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF69705 9 145 1.22E-23 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF47794 376 435 1.11E-11 T 13-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF47794 449 511 1.35E-6 T 13-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Gene3D G3DSA:3.30.300.20 219 297 3.0E-31 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Gene3D G3DSA:1.10.150.20 374 439 6.1E-18 T 13-10-2018 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Pfam PF08529 NusA N-terminal domain 11 144 1.2E-18 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Gene3D G3DSA:3.30.300.20 298 367 9.8E-23 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Gene3D G3DSA:2.40.50.140 155 218 2.0E-17 T 13-10-2018 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Pfam PF13184 NusA-like KH domain 250 318 5.5E-28 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF50249 151 219 2.86E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 9 449 26.319 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 12 359 5.9E-105 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF54814 299 361 1.44E-14 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Pfam PF14520 Helix-hairpin-helix domain 452 510 7.1E-9 T 13-10-2018 AMF_543 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF54814 222 297 2.55E-28 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMF_388 b8695dac21b42926265295a7633625f5 404 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 67 397 7.0E-146 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMF_388 b8695dac21b42926265295a7633625f5 404 Gene3D G3DSA:3.30.420.40 213 378 4.2E-125 T 13-10-2018 AMF_388 b8695dac21b42926265295a7633625f5 404 SUPERFAMILY SSF53067 69 207 1.68E-36 T 13-10-2018 AMF_388 b8695dac21b42926265295a7633625f5 404 Gene3D G3DSA:3.90.640.10 245 320 4.2E-125 T 13-10-2018 AMF_388 b8695dac21b42926265295a7633625f5 404 SUPERFAMILY SSF53067 209 395 1.57E-45 T 13-10-2018 AMF_388 b8695dac21b42926265295a7633625f5 404 Pfam PF06723 MreB/Mbl protein 69 396 6.0E-140 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMF_388 b8695dac21b42926265295a7633625f5 404 Gene3D G3DSA:3.30.420.40 71 389 4.2E-125 T 13-10-2018 AMF_388 b8695dac21b42926265295a7633625f5 404 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 361 387 1.2E-55 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMF_388 b8695dac21b42926265295a7633625f5 404 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 128 151 1.2E-55 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMF_388 b8695dac21b42926265295a7633625f5 404 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 210 1.2E-55 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMF_388 b8695dac21b42926265295a7633625f5 404 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 246 266 1.2E-55 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMF_388 b8695dac21b42926265295a7633625f5 404 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 108 126 1.2E-55 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AMF_778 74a516ba85fdc2d40772b9cbce96ec63 153 Pfam PF00380 Ribosomal protein S9/S16 33 153 5.6E-41 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AMF_778 74a516ba85fdc2d40772b9cbce96ec63 153 Gene3D G3DSA:3.30.230.10 26 153 3.8E-45 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_778 74a516ba85fdc2d40772b9cbce96ec63 153 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 24 153 28.885 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid AMF_778 74a516ba85fdc2d40772b9cbce96ec63 153 ProSitePatterns PS00360 Ribosomal protein S9 signature. 92 110 - T 13-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 AMF_778 74a516ba85fdc2d40772b9cbce96ec63 153 SUPERFAMILY SSF54211 28 153 7.97E-43 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 Pfam PF06071 Protein of unknown function (DUF933) 280 363 2.6E-38 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 Gene3D G3DSA:3.10.20.30 49 361 2.8E-134 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 SUPERFAMILY SSF52540 3 302 7.72E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.3E-131 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 Gene3D G3DSA:1.10.150.300 114 199 2.8E-134 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 4.6E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 4.6E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 4.6E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 4.6E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 Gene3D G3DSA:3.40.50.300 3 279 2.8E-134 T 13-10-2018 AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 364 39.566 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 PIRSF PIRSF006641 1 364 1.7E-145 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 Pfam PF01926 50S ribosome-binding GTPase 5 116 5.9E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_1028 b3545f4fba87cc1528c24d9f7a7e85d9 364 SUPERFAMILY SSF81271 280 361 9.81E-35 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMF_484 c1098c35cd19b175e9df07cb1a6dad8f 117 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 93 7.9E-13 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMF_484 c1098c35cd19b175e9df07cb1a6dad8f 117 Gene3D G3DSA:3.10.20.30 1 116 2.9E-44 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AMF_484 c1098c35cd19b175e9df07cb1a6dad8f 117 PRINTS PR00355 Adrenodoxin signature 39 49 4.8E-5 T 13-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMF_484 c1098c35cd19b175e9df07cb1a6dad8f 117 PRINTS PR00355 Adrenodoxin signature 84 92 4.8E-5 T 13-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMF_484 c1098c35cd19b175e9df07cb1a6dad8f 117 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 39 49 - T 13-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMF_484 c1098c35cd19b175e9df07cb1a6dad8f 117 SUPERFAMILY SSF54292 1 104 5.77E-31 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Hamap MF_02003 Isoleucine--tRNA ligase [ileS]. 5 1086 13.648 T 13-10-2018 IPR023586 Isoleucine-tRNA ligase, type 2 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 10 881 6.4E-255 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Gene3D G3DSA:3.90.740.10 201 419 1.5E-224 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Pfam PF08264 Anticodon-binding domain of tRNA 737 876 2.0E-21 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 SUPERFAMILY SSF50677 204 415 2.93E-45 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 50 61 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 20 659 7.3E-187 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 588 597 2.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 43 54 2.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 413 428 2.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 233 256 2.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 548 561 2.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Gene3D G3DSA:1.10.730.10 673 869 3.4E-39 T 13-10-2018 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Gene3D G3DSA:3.40.50.620 17 654 1.5E-224 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 SUPERFAMILY SSF52374 9 660 2.6E-129 T 13-10-2018 AMF_514 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 SUPERFAMILY SSF47323 685 939 9.16E-45 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_965 c2c865523d47a709ba186fde0f484786 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 318 5.0E-51 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMF_965 c2c865523d47a709ba186fde0f484786 336 Gene3D G3DSA:3.30.360.10 128 315 1.6E-124 T 13-10-2018 AMF_965 c2c865523d47a709ba186fde0f484786 336 PIRSF PIRSF000148 1 336 1.4E-120 T 13-10-2018 AMF_965 c2c865523d47a709ba186fde0f484786 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 118 2.9E-25 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMF_965 c2c865523d47a709ba186fde0f484786 336 SUPERFAMILY SSF55347 129 319 1.48E-69 T 13-10-2018 AMF_965 c2c865523d47a709ba186fde0f484786 336 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 332 31.517 T 13-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMF_965 c2c865523d47a709ba186fde0f484786 336 Gene3D G3DSA:3.40.50.720 4 329 1.6E-124 T 13-10-2018 AMF_965 c2c865523d47a709ba186fde0f484786 336 SUPERFAMILY SSF51735 3 157 9.06E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_965 c2c865523d47a709ba186fde0f484786 336 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 3 333 2.3E-120 T 13-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMF_965 c2c865523d47a709ba186fde0f484786 336 SMART SM00859 3 119 5.3E-34 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMF_453 709d85c09c147247ae3b0522907dd469 178 SUPERFAMILY SSF100950 3 172 6.7E-40 T 13-10-2018 IPR037171 NagB/RpiA transferase-like AMF_453 709d85c09c147247ae3b0522907dd469 178 PIRSF PIRSF006806 1 169 3.5E-29 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMF_453 709d85c09c147247ae3b0522907dd469 178 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 5 166 4.1E-23 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMF_453 709d85c09c147247ae3b0522907dd469 178 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 4 166 7.0E-31 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMF_453 709d85c09c147247ae3b0522907dd469 178 Gene3D G3DSA:3.40.50.10420 3 177 2.2E-33 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AMF_544 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:3.30.2090.10 178 269 9.8E-213 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMF_544 5443cab7102da7ef037519c6130d351a 1037 SUPERFAMILY SSF82693 42 129 2.54E-16 T 13-10-2018 AMF_544 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:3.30.70.1430 564 660 9.8E-213 T 13-10-2018 AMF_544 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:3.30.70.1440 661 854 9.8E-213 T 13-10-2018 AMF_544 5443cab7102da7ef037519c6130d351a 1037 SUPERFAMILY SSF82866 792 1027 7.85E-36 T 13-10-2018 AMF_544 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:3.30.70.1320 133 322 9.8E-213 T 13-10-2018 AMF_544 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:1.20.1640.10 504 1021 9.8E-213 T 13-10-2018 AMF_544 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 382 406 3.6E-27 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMF_544 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 435 458 3.6E-27 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMF_544 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 3.6E-27 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMF_544 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 460 483 3.6E-27 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMF_544 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 3.6E-27 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMF_544 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 3.6E-27 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMF_544 5443cab7102da7ef037519c6130d351a 1037 SUPERFAMILY SSF82866 288 488 8.76E-38 T 13-10-2018 AMF_544 5443cab7102da7ef037519c6130d351a 1037 SUPERFAMILY SSF82693 136 322 1.92E-12 T 13-10-2018 AMF_544 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:3.30.70.1430 41 805 9.8E-213 T 13-10-2018 AMF_544 5443cab7102da7ef037519c6130d351a 1037 SUPERFAMILY SSF82714 185 264 1.96E-6 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMF_544 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:3.30.2090.10 709 797 9.8E-213 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMF_544 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:1.20.1640.10 14 503 9.8E-213 T 13-10-2018 AMF_544 5443cab7102da7ef037519c6130d351a 1037 Pfam PF00873 AcrB/AcrD/AcrF family 4 1022 7.7E-148 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMF_091 53a0506619bf698be4110041ae85081c 1152 SMART SM01058 490 585 7.5E-33 T 13-10-2018 IPR003711 CarD-like/TRCF domain AMF_091 53a0506619bf698be4110041ae85081c 1152 Gene3D G3DSA:3.40.50.11180 58 329 7.6E-62 T 13-10-2018 AMF_091 53a0506619bf698be4110041ae85081c 1152 Gene3D G3DSA:3.40.50.300 491 997 1.2E-198 T 13-10-2018 AMF_091 53a0506619bf698be4110041ae85081c 1152 SUPERFAMILY SSF52540 37 356 8.63E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_091 53a0506619bf698be4110041ae85081c 1152 SUPERFAMILY SSF141259 483 552 3.01E-16 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily AMF_091 53a0506619bf698be4110041ae85081c 1152 Gene3D G3DSA:3.40.50.300 551 790 1.2E-198 T 13-10-2018 AMF_091 53a0506619bf698be4110041ae85081c 1152 Gene3D G3DSA:3.90.1150.50 1010 1149 3.7E-24 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain AMF_091 53a0506619bf698be4110041ae85081c 1152 Pfam PF02559 CarD-like/TRCF domain 491 582 4.5E-21 T 13-10-2018 IPR003711 CarD-like/TRCF domain AMF_091 53a0506619bf698be4110041ae85081c 1152 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 34 1104 24.599 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMF_091 53a0506619bf698be4110041ae85081c 1152 SUPERFAMILY SSF143517 1004 1149 2.62E-29 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain AMF_091 53a0506619bf698be4110041ae85081c 1152 SMART SM00487 608 805 5.2E-31 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMF_091 53a0506619bf698be4110041ae85081c 1152 Pfam PF00271 Helicase conserved C-terminal domain 813 918 8.8E-16 T 13-10-2018 IPR001650 Helicase, C-terminal AMF_091 53a0506619bf698be4110041ae85081c 1152 Pfam PF00270 DEAD/DEAH box helicase 615 773 2.6E-17 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMF_091 53a0506619bf698be4110041ae85081c 1152 SMART SM00982 1014 1114 7.3E-30 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMF_091 53a0506619bf698be4110041ae85081c 1152 Gene3D G3DSA:2.30.30.840 494 550 1.2E-198 T 13-10-2018 AMF_091 53a0506619bf698be4110041ae85081c 1152 SMART SM00490 835 919 4.8E-16 T 13-10-2018 IPR001650 Helicase, C-terminal AMF_091 53a0506619bf698be4110041ae85081c 1152 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 166 1087 4.4E-276 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMF_091 53a0506619bf698be4110041ae85081c 1152 Gene3D G3DSA:3.30.2060.10 149 236 7.6E-62 T 13-10-2018 AMF_091 53a0506619bf698be4110041ae85081c 1152 SUPERFAMILY SSF52540 791 999 9.24E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_091 53a0506619bf698be4110041ae85081c 1152 SUPERFAMILY SSF52540 535 792 2.6E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_091 53a0506619bf698be4110041ae85081c 1152 Pfam PF03461 TRCF domain 1016 1103 3.7E-23 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMF_974 a7095fb2d16952d0955316cf63beacec 388 SUPERFAMILY SSF51905 5 385 1.69E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_974 a7095fb2d16952d0955316cf63beacec 388 Gene3D G3DSA:3.30.9.50 75 262 4.0E-74 T 13-10-2018 AMF_974 a7095fb2d16952d0955316cf63beacec 388 Pfam PF01494 FAD binding domain 5 309 1.1E-17 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 AMF_974 a7095fb2d16952d0955316cf63beacec 388 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 383 1.1E-95 T 13-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AMF_974 a7095fb2d16952d0955316cf63beacec 388 Gene3D G3DSA:3.50.50.60 6 331 4.0E-74 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_974 a7095fb2d16952d0955316cf63beacec 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 273 288 3.1E-11 T 13-10-2018 AMF_974 a7095fb2d16952d0955316cf63beacec 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 288 304 3.1E-11 T 13-10-2018 AMF_974 a7095fb2d16952d0955316cf63beacec 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 3.1E-11 T 13-10-2018 AMF_974 a7095fb2d16952d0955316cf63beacec 388 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 287 300 - T 13-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 AMF_728 fed5294f13c058eb90377efd028acbe8 882 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 305 317 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMF_728 fed5294f13c058eb90377efd028acbe8 882 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 774 852 2.7E-23 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AMF_728 fed5294f13c058eb90377efd028acbe8 882 Gene3D G3DSA:3.40.50.300 355 552 6.8E-70 T 13-10-2018 AMF_728 fed5294f13c058eb90377efd028acbe8 882 SUPERFAMILY SSF81923 14 166 5.1E-33 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMF_728 fed5294f13c058eb90377efd028acbe8 882 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 215 347 2.5E-12 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_728 fed5294f13c058eb90377efd028acbe8 882 SUPERFAMILY SSF52540 170 533 8.26E-99 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_728 fed5294f13c058eb90377efd028acbe8 882 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 639 657 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 AMF_728 fed5294f13c058eb90377efd028acbe8 882 Gene3D G3DSA:3.40.50.300 558 773 7.3E-84 T 13-10-2018 AMF_728 fed5294f13c058eb90377efd028acbe8 882 SMART SM01086 774 863 4.2E-29 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AMF_728 fed5294f13c058eb90377efd028acbe8 882 SUPERFAMILY SSF52540 555 846 2.42E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_728 fed5294f13c058eb90377efd028acbe8 882 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 105 155 4.5E-5 T 13-10-2018 IPR004176 Clp, N-terminal AMF_728 fed5294f13c058eb90377efd028acbe8 882 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 27 78 8.9E-6 T 13-10-2018 IPR004176 Clp, N-terminal AMF_728 fed5294f13c058eb90377efd028acbe8 882 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 683 701 2.0E-41 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AMF_728 fed5294f13c058eb90377efd028acbe8 882 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 716 730 2.0E-41 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AMF_728 fed5294f13c058eb90377efd028acbe8 882 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 654 672 2.0E-41 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AMF_728 fed5294f13c058eb90377efd028acbe8 882 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 609 627 2.0E-41 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 AMF_728 fed5294f13c058eb90377efd028acbe8 882 Gene3D G3DSA:3.40.50.300 158 353 2.2E-68 T 13-10-2018 AMF_728 fed5294f13c058eb90377efd028acbe8 882 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 16 854 0.0 T 13-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 AMF_728 fed5294f13c058eb90377efd028acbe8 882 Gene3D G3DSA:1.10.8.60 774 874 2.4E-24 T 13-10-2018 AMF_728 fed5294f13c058eb90377efd028acbe8 882 SMART SM00382 209 354 2.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_728 fed5294f13c058eb90377efd028acbe8 882 SMART SM00382 605 748 6.5E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_728 fed5294f13c058eb90377efd028acbe8 882 Pfam PF07724 AAA domain (Cdc48 subfamily) 604 768 3.2E-52 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_728 fed5294f13c058eb90377efd028acbe8 882 Gene3D G3DSA:1.10.1780.10 12 157 2.5E-25 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMF_609 9ac6bd347ccebd53409b93e744acc5ab 487 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 283 482 7.0E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMF_609 9ac6bd347ccebd53409b93e744acc5ab 487 Gene3D G3DSA:1.10.3720.10 260 484 4.9E-29 T 13-10-2018 IPR035906 MetI-like superfamily AMF_609 9ac6bd347ccebd53409b93e744acc5ab 487 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 245 482 2.2E-59 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AMF_609 9ac6bd347ccebd53409b93e744acc5ab 487 SUPERFAMILY SSF161098 249 471 4.71E-30 T 13-10-2018 IPR035906 MetI-like superfamily AMF_609 9ac6bd347ccebd53409b93e744acc5ab 487 Pfam PF11812 Domain of unknown function (DUF3333) 93 217 3.8E-11 T 13-10-2018 IPR024573 Domain of unknown function DUF3333 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 SMART SM00475 16 271 3.2E-111 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 Gene3D G3DSA:1.10.150.20 646 787 3.8E-102 T 13-10-2018 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 PRINTS PR00868 DNA-polymerase family A (pol I) signature 615 630 1.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 PRINTS PR00868 DNA-polymerase family A (pol I) signature 689 714 1.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 PRINTS PR00868 DNA-polymerase family A (pol I) signature 592 614 1.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 PRINTS PR00868 DNA-polymerase family A (pol I) signature 637 660 1.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 PRINTS PR00868 DNA-polymerase family A (pol I) signature 667 680 1.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 PRINTS PR00868 DNA-polymerase family A (pol I) signature 726 737 1.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 PRINTS PR00868 DNA-polymerase family A (pol I) signature 748 759 1.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 PRINTS PR00868 DNA-polymerase family A (pol I) signature 780 796 1.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 Gene3D G3DSA:3.30.420.10 319 476 5.2E-12 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 Gene3D G3DSA:1.10.150.20 183 256 2.9E-89 T 13-10-2018 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 Gene3D G3DSA:3.40.50.1010 19 287 2.9E-89 T 13-10-2018 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 18 179 8.5E-47 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 SMART SM00279 182 217 2.3E-12 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 Gene3D G3DSA:3.30.70.370 600 855 3.8E-102 T 13-10-2018 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 SUPERFAMILY SSF56672 455 858 2.67E-137 T 13-10-2018 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 Gene3D G3DSA:1.20.1060.10 478 595 3.4E-34 T 13-10-2018 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 SMART SM00482 623 823 1.2E-94 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 SUPERFAMILY SSF88723 15 179 6.62E-50 T 13-10-2018 IPR029060 PIN-like domain superfamily AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 SUPERFAMILY SSF47807 180 295 3.89E-29 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 Pfam PF00476 DNA polymerase family A 485 856 4.3E-139 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 TIGRFAM TIGR00593 pola: DNA polymerase I 19 858 1.7E-264 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 ProSitePatterns PS00447 DNA polymerase family A signature. 689 708 - T 13-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 SUPERFAMILY SSF53098 341 452 4.4E-10 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AMF_914 9a2e1b4fbfe7f65cb9058e372ae75c97 864 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 180 274 1.9E-27 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 AMF_214 8842e4e2cef05a7a08f5adb141658b0d 462 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 28 394 3.0E-31 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AMF_214 8842e4e2cef05a7a08f5adb141658b0d 462 Gene3D G3DSA:3.65.10.10 254 423 1.4E-20 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMF_214 8842e4e2cef05a7a08f5adb141658b0d 462 SUPERFAMILY SSF55205 19 401 1.19E-54 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMF_214 8842e4e2cef05a7a08f5adb141658b0d 462 Gene3D G3DSA:3.65.10.10 37 253 2.2E-31 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMF_485 d03da5b93868775bdfe344287517d2d5 602 SUPERFAMILY SSF100920 384 531 2.75E-40 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 Gene3D G3DSA:3.30.420.40 19 373 2.9E-99 T 13-10-2018 AMF_485 d03da5b93868775bdfe344287517d2d5 602 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 20 27 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 197 210 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 331 345 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 Pfam PF00012 Hsp70 protein 18 579 1.9E-135 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 SUPERFAMILY SSF53067 193 377 3.69E-43 T 13-10-2018 AMF_485 d03da5b93868775bdfe344287517d2d5 602 Gene3D G3DSA:3.90.640.10 230 310 2.9E-99 T 13-10-2018 AMF_485 d03da5b93868775bdfe344287517d2d5 602 Gene3D G3DSA:3.30.420.40 185 360 2.9E-99 T 13-10-2018 AMF_485 d03da5b93868775bdfe344287517d2d5 602 SUPERFAMILY SSF53067 15 186 1.73E-42 T 13-10-2018 AMF_485 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 464 480 1.7E-42 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 143 163 1.7E-42 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 203 213 1.7E-42 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 384 403 1.7E-42 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 45 57 1.7E-42 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 328 344 1.7E-42 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 16 29 1.7E-42 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 359 379 1.7E-42 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_485 d03da5b93868775bdfe344287517d2d5 602 Gene3D G3DSA:2.60.34.10 378 549 2.6E-45 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMF_390 a71b5965e39fd480db40cbdecbd5015a 93 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 89 2.0E-40 T 13-10-2018 AMF_390 a71b5965e39fd480db40cbdecbd5015a 93 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 90 19.176 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_390 a71b5965e39fd480db40cbdecbd5015a 93 SUPERFAMILY SSF47060 3 90 2.65E-28 T 13-10-2018 IPR009068 S15/NS1, RNA-binding AMF_390 a71b5965e39fd480db40cbdecbd5015a 93 Gene3D G3DSA:1.10.287.10 1 90 5.2E-28 T 13-10-2018 AMF_390 a71b5965e39fd480db40cbdecbd5015a 93 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 3.8E-31 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_390 a71b5965e39fd480db40cbdecbd5015a 93 Pfam PF00312 Ribosomal protein S15 8 89 7.9E-30 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_390 a71b5965e39fd480db40cbdecbd5015a 93 SMART SM01387 8 89 4.8E-38 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_208 15f38c240fbd35abeb5350715f6f23cb 472 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 14 466 3.9E-117 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AMF_208 15f38c240fbd35abeb5350715f6f23cb 472 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 466 27.584 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AMF_208 15f38c240fbd35abeb5350715f6f23cb 472 Gene3D G3DSA:3.90.190.20 326 471 4.3E-46 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMF_208 15f38c240fbd35abeb5350715f6f23cb 472 Gene3D G3DSA:3.40.1390.10 3 88 7.4E-8 T 13-10-2018 AMF_208 15f38c240fbd35abeb5350715f6f23cb 472 SUPERFAMILY SSF53623 89 311 6.75E-59 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMF_208 15f38c240fbd35abeb5350715f6f23cb 472 Pfam PF02875 Mur ligase family, glutamate ligase domain 320 399 2.5E-19 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMF_208 15f38c240fbd35abeb5350715f6f23cb 472 SUPERFAMILY SSF53244 320 469 3.51E-37 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMF_208 15f38c240fbd35abeb5350715f6f23cb 472 Gene3D G3DSA:3.40.1190.10 91 323 1.8E-59 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMF_208 15f38c240fbd35abeb5350715f6f23cb 472 SUPERFAMILY SSF63418 14 87 6.54E-10 T 13-10-2018 IPR035911 MurE/MurF, N-terminal AMF_208 15f38c240fbd35abeb5350715f6f23cb 472 Pfam PF08245 Mur ligase middle domain 97 300 8.7E-46 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 Gene3D G3DSA:3.40.50.1370 132 277 7.8E-81 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 SUPERFAMILY SSF53671 4 298 1.02E-79 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 5 144 5.5E-36 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 153 295 7.2E-23 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 5 297 1.6E-78 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 278 292 2.2E-25 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 131 148 2.2E-25 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 75 84 2.2E-25 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 214 223 2.2E-25 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 37 59 2.2E-25 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 255 260 2.2E-25 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 Gene3D G3DSA:3.40.50.1370 9 293 7.8E-81 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 251 260 3.7E-16 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 47 66 3.7E-16 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 132 143 3.7E-16 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 263 286 3.7E-16 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_495 5ae7efe60484a50992db1653fe0406d9 298 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 47 54 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_161 bf464169dddecd25b3298a42da99f6c7 313 SMART SM00849 83 259 7.7E-7 T 13-10-2018 IPR001279 Metallo-beta-lactamase AMF_161 bf464169dddecd25b3298a42da99f6c7 313 Gene3D G3DSA:3.60.15.10 47 313 4.9E-64 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMF_161 bf464169dddecd25b3298a42da99f6c7 313 Pfam PF12706 Beta-lactamase superfamily domain 95 280 1.0E-27 T 13-10-2018 IPR001279 Metallo-beta-lactamase AMF_161 bf464169dddecd25b3298a42da99f6c7 313 SUPERFAMILY SSF56281 50 313 2.92E-43 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMF_378 83ad0b51c2127d9003ac20ace72fd727 352 SUPERFAMILY SSF52317 66 305 9.4E-17 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_378 83ad0b51c2127d9003ac20ace72fd727 352 Pfam PF07722 Peptidase C26 149 302 1.7E-4 T 13-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 AMF_378 83ad0b51c2127d9003ac20ace72fd727 352 Gene3D G3DSA:3.40.50.880 53 314 2.7E-15 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 SUPERFAMILY SSF48163 278 441 4.05E-26 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 323 2.6E-92 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 7 18 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 9.3E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 4 16 9.3E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 18 29 9.3E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 33 46 9.3E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 9.3E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 Gene3D G3DSA:3.40.50.620 1 313 3.4E-94 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 Gene3D G3DSA:1.10.10.350 358 441 2.1E-10 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 SUPERFAMILY SSF52374 2 292 2.39E-85 T 13-10-2018 AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 1 441 23.894 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMF_030 0eec4b38b3b13d8c43fc70bd3b264c93 441 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 300 2.0E-68 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMF_837 6c020605fe48fad2b81b688deb1c58e9 715 Gene3D G3DSA:2.160.20.100 187 273 9.5E-13 T 13-10-2018 AMF_837 6c020605fe48fad2b81b688deb1c58e9 715 Gene3D G3DSA:2.160.20.80 70 186 4.6E-18 T 13-10-2018 AMF_837 6c020605fe48fad2b81b688deb1c58e9 715 SUPERFAMILY SSF141571 443 620 1.64E-24 T 13-10-2018 AMF_837 6c020605fe48fad2b81b688deb1c58e9 715 SUPERFAMILY SSF141571 105 266 7.32E-32 T 13-10-2018 AMF_837 6c020605fe48fad2b81b688deb1c58e9 715 Pfam PF00805 Pentapeptide repeats (8 copies) 297 331 9.2E-8 T 13-10-2018 IPR001646 Pentapeptide repeat AMF_837 6c020605fe48fad2b81b688deb1c58e9 715 Pfam PF00805 Pentapeptide repeats (8 copies) 252 291 9.2E-8 T 13-10-2018 IPR001646 Pentapeptide repeat AMF_837 6c020605fe48fad2b81b688deb1c58e9 715 Pfam PF13599 Pentapeptide repeats (9 copies) 558 624 7.7E-13 T 13-10-2018 IPR001646 Pentapeptide repeat AMF_837 6c020605fe48fad2b81b688deb1c58e9 715 Pfam PF13599 Pentapeptide repeats (9 copies) 106 174 1.6E-11 T 13-10-2018 IPR001646 Pentapeptide repeat AMF_837 6c020605fe48fad2b81b688deb1c58e9 715 SUPERFAMILY SSF141571 227 394 9.42E-30 T 13-10-2018 AMF_837 6c020605fe48fad2b81b688deb1c58e9 715 Gene3D G3DSA:2.160.20.100 466 643 3.1E-23 T 13-10-2018 AMF_837 6c020605fe48fad2b81b688deb1c58e9 715 Gene3D G3DSA:2.160.20.80 274 448 3.8E-30 T 13-10-2018 AMF_973 c4f21121a0ac35a749d687b79192d932 400 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 241 381 8.4E-59 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMF_973 c4f21121a0ac35a749d687b79192d932 400 Gene3D G3DSA:3.30.300.10 16 241 2.0E-141 T 13-10-2018 AMF_973 c4f21121a0ac35a749d687b79192d932 400 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 15 111 6.2E-33 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMF_973 c4f21121a0ac35a749d687b79192d932 400 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 16 385 4.6E-133 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMF_973 c4f21121a0ac35a749d687b79192d932 400 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 125 135 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMF_973 c4f21121a0ac35a749d687b79192d932 400 SUPERFAMILY SSF55973 14 120 1.06E-33 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMF_973 c4f21121a0ac35a749d687b79192d932 400 SUPERFAMILY SSF55973 241 389 1.22E-59 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMF_973 c4f21121a0ac35a749d687b79192d932 400 Pfam PF02772 S-adenosylmethionine synthetase, central domain 124 239 8.5E-28 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMF_973 c4f21121a0ac35a749d687b79192d932 400 Gene3D G3DSA:3.30.300.10 21 278 2.0E-141 T 13-10-2018 AMF_973 c4f21121a0ac35a749d687b79192d932 400 SUPERFAMILY SSF55973 121 240 7.85E-36 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMF_973 c4f21121a0ac35a749d687b79192d932 400 PIRSF PIRSF000497 8 392 3.1E-141 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMF_973 c4f21121a0ac35a749d687b79192d932 400 Gene3D G3DSA:3.30.300.10 112 383 2.0E-141 T 13-10-2018 AMF_973 c4f21121a0ac35a749d687b79192d932 400 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 267 275 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMF_294 acdc2ba4a68ffb6dd00f1eeeb896f33a 276 TIGRFAM TIGR02218 phg_TIGR02218: phage conserved hypothetical protein BR0599 34 268 8.3E-56 T 13-10-2018 IPR011928 Bacteriophage phiJL001, Gp84 AMF_294 acdc2ba4a68ffb6dd00f1eeeb896f33a 276 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 1 161 1.1E-36 T 13-10-2018 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal AMF_294 acdc2ba4a68ffb6dd00f1eeeb896f33a 276 Pfam PF09356 Phage conserved hypothetical protein BR0599 191 266 8.8E-26 T 13-10-2018 IPR018964 Bacteriophage phiJL001, Gp84, C-terminal AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Gene3D G3DSA:3.40.50.800 533 635 1.4E-18 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Gene3D G3DSA:3.30.980.10 71 223 1.3E-63 T 13-10-2018 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PRINTS PR01047 Threonyl-tRNA synthetase signature 465 493 5.7E-53 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PRINTS PR01047 Threonyl-tRNA synthetase signature 330 358 5.7E-53 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PRINTS PR01047 Threonyl-tRNA synthetase signature 508 521 5.7E-53 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PRINTS PR01047 Threonyl-tRNA synthetase signature 535 547 5.7E-53 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PRINTS PR01047 Threonyl-tRNA synthetase signature 363 386 5.7E-53 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 74 628 1.2E-210 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Gene3D G3DSA:3.30.54.20 132 188 1.3E-63 T 13-10-2018 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Gene3D G3DSA:3.10.20.30 1 63 8.0E-7 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 SUPERFAMILY SSF55186 66 242 1.19E-60 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 SUPERFAMILY SSF81271 5 63 2.75E-5 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Gene3D G3DSA:3.30.930.10 224 532 5.5E-124 T 13-10-2018 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 171 220 8.3E-14 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 68 635 32.459 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 SUPERFAMILY SSF55681 244 527 1.44E-98 T 13-10-2018 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 SUPERFAMILY SSF52954 528 632 2.27E-20 T 13-10-2018 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 320 530 3.7E-44 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Pfam PF03129 Anticodon binding domain 545 629 8.8E-12 T 13-10-2018 IPR004154 Anticodon-binding AMF_961 b39fcc37cefb1dc51feae7e0aeaa9d94 636 SMART SM00863 171 220 9.3E-23 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMF_477 24e4ba8b76abadb404f672cf3bef4925 352 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 228 241 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_477 24e4ba8b76abadb404f672cf3bef4925 352 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 16 347 24.529 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_477 24e4ba8b76abadb404f672cf3bef4925 352 Pfam PF00146 NADH dehydrogenase 22 340 6.7E-123 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_477 24e4ba8b76abadb404f672cf3bef4925 352 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 59 74 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_859 73ddf59cf7ccbbecd9b97def07770772 146 SUPERFAMILY SSF54919 1 141 3.4E-57 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_859 73ddf59cf7ccbbecd9b97def07770772 146 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 5.6E-39 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_859 73ddf59cf7ccbbecd9b97def07770772 146 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 5.6E-39 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_859 73ddf59cf7ccbbecd9b97def07770772 146 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 5.6E-39 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_859 73ddf59cf7ccbbecd9b97def07770772 146 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 5.6E-39 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_859 73ddf59cf7ccbbecd9b97def07770772 146 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 5.6E-39 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_859 73ddf59cf7ccbbecd9b97def07770772 146 Gene3D G3DSA:3.30.70.141 1 141 2.9E-55 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_859 73ddf59cf7ccbbecd9b97def07770772 146 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 33.924 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_859 73ddf59cf7ccbbecd9b97def07770772 146 SMART SM00562 3 140 1.1E-76 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_859 73ddf59cf7ccbbecd9b97def07770772 146 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 13-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_859 73ddf59cf7ccbbecd9b97def07770772 146 Pfam PF00334 Nucleoside diphosphate kinase 4 138 2.0E-53 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_220 a9ed4f122f674887f155044ae63e6dad 221 SUPERFAMILY SSF52540 12 195 3.23E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_220 a9ed4f122f674887f155044ae63e6dad 221 Gene3D G3DSA:3.40.50.300 32 147 1.6E-15 T 13-10-2018 AMF_220 a9ed4f122f674887f155044ae63e6dad 221 Gene3D G3DSA:1.10.8.60 150 216 1.4E-7 T 13-10-2018 AMF_220 a9ed4f122f674887f155044ae63e6dad 221 Pfam PF00308 Bacterial dnaA protein 82 193 2.8E-7 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA AMF_297 74d100dd88e4667712d1692194820136 301 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 39 56 - T 13-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMF_297 74d100dd88e4667712d1692194820136 301 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 5 287 9.2E-93 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMF_297 74d100dd88e4667712d1692194820136 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 9.3E-29 T 13-10-2018 IPR002220 DapA-like GO:0016829 AMF_297 74d100dd88e4667712d1692194820136 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 9.3E-29 T 13-10-2018 IPR002220 DapA-like GO:0016829 AMF_297 74d100dd88e4667712d1692194820136 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 9.3E-29 T 13-10-2018 IPR002220 DapA-like GO:0016829 AMF_297 74d100dd88e4667712d1692194820136 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 9.3E-29 T 13-10-2018 IPR002220 DapA-like GO:0016829 AMF_297 74d100dd88e4667712d1692194820136 301 SMART SM01130 2 289 7.1E-123 T 13-10-2018 IPR002220 DapA-like GO:0016829 AMF_297 74d100dd88e4667712d1692194820136 301 PIRSF PIRSF001365 1 299 7.8E-90 T 13-10-2018 IPR002220 DapA-like GO:0016829 AMF_297 74d100dd88e4667712d1692194820136 301 Gene3D G3DSA:3.20.20.70 1 290 1.4E-99 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_297 74d100dd88e4667712d1692194820136 301 Pfam PF00701 Dihydrodipicolinate synthetase family 2 286 9.8E-80 T 13-10-2018 IPR002220 DapA-like GO:0016829 AMF_297 74d100dd88e4667712d1692194820136 301 SUPERFAMILY SSF51569 1 289 9.84E-93 T 13-10-2018 AMF_297 74d100dd88e4667712d1692194820136 301 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 2 287 58.209 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMF_297 74d100dd88e4667712d1692194820136 301 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 134 164 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AMF_011 c7fc35b59951ee0edb4f5330c8123832 329 SUPERFAMILY SSF52374 2 327 1.21E-84 T 13-10-2018 AMF_011 c7fc35b59951ee0edb4f5330c8123832 329 Gene3D G3DSA:3.40.50.620 2 326 9.3E-125 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_011 c7fc35b59951ee0edb4f5330c8123832 329 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 2 327 3.0E-92 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMF_011 c7fc35b59951ee0edb4f5330c8123832 329 Pfam PF00579 tRNA synthetases class I (W and Y) 2 275 2.4E-73 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_011 c7fc35b59951ee0edb4f5330c8123832 329 Gene3D G3DSA:1.10.240.10 184 295 9.3E-125 T 13-10-2018 AMF_011 c7fc35b59951ee0edb4f5330c8123832 329 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 1 328 36.485 T 13-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 AMF_011 c7fc35b59951ee0edb4f5330c8123832 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 13 29 5.2E-28 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMF_011 c7fc35b59951ee0edb4f5330c8123832 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 193 203 5.2E-28 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMF_011 c7fc35b59951ee0edb4f5330c8123832 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 64 83 5.2E-28 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMF_011 c7fc35b59951ee0edb4f5330c8123832 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 139 160 5.2E-28 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMF_011 c7fc35b59951ee0edb4f5330c8123832 329 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 8 18 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_038 6467ad90b151b98b64cf3d700fb910c3 428 SUPERFAMILY SSF51161 243 411 4.51E-44 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily AMF_038 6467ad90b151b98b64cf3d700fb910c3 428 SUPERFAMILY SSF53448 1 240 4.28E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMF_038 6467ad90b151b98b64cf3d700fb910c3 428 Gene3D G3DSA:3.90.550.10 1 219 1.9E-32 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMF_038 6467ad90b151b98b64cf3d700fb910c3 428 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 1 427 29.787 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 AMF_038 6467ad90b151b98b64cf3d700fb910c3 428 Pfam PF12804 MobA-like NTP transferase domain 4 136 1.1E-17 T 13-10-2018 IPR025877 MobA-like NTP transferase AMF_038 6467ad90b151b98b64cf3d700fb910c3 428 Gene3D G3DSA:2.160.10.10 220 428 7.2E-53 T 13-10-2018 AMF_038 6467ad90b151b98b64cf3d700fb910c3 428 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 293 326 4.3E-6 T 13-10-2018 IPR001451 Hexapeptide repeat AMF_038 6467ad90b151b98b64cf3d700fb910c3 428 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 372 404 6.0E-11 T 13-10-2018 IPR001451 Hexapeptide repeat AMF_038 6467ad90b151b98b64cf3d700fb910c3 428 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 378 406 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMF_422 aec23ab42652c2fc7d995cada953a75a 118 Gene3D G3DSA:3.40.50.150 1 113 7.1E-32 T 13-10-2018 AMF_422 aec23ab42652c2fc7d995cada953a75a 118 SUPERFAMILY SSF53335 2 92 9.02E-15 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_422 aec23ab42652c2fc7d995cada953a75a 118 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 1 107 7.2E-38 T 13-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AMF_422 aec23ab42652c2fc7d995cada953a75a 118 Pfam PF13489 Methyltransferase domain 2 77 2.0E-7 T 13-10-2018 AMF_760 1eb52ff58bb64d096a947d2370df80f9 482 SUPERFAMILY SSF52540 52 478 5.83E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_760 1eb52ff58bb64d096a947d2370df80f9 482 Pfam PF07724 AAA domain (Cdc48 subfamily) 239 368 3.8E-35 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_760 1eb52ff58bb64d096a947d2370df80f9 482 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 50 482 1.7E-168 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AMF_760 1eb52ff58bb64d096a947d2370df80f9 482 Gene3D G3DSA:1.10.8.60 374 479 4.5E-39 T 13-10-2018 AMF_760 1eb52ff58bb64d096a947d2370df80f9 482 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 99 174 7.1E-6 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_760 1eb52ff58bb64d096a947d2370df80f9 482 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 374 444 6.2E-6 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AMF_760 1eb52ff58bb64d096a947d2370df80f9 482 SMART SM01086 374 468 1.6E-20 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AMF_760 1eb52ff58bb64d096a947d2370df80f9 482 SMART SM00382 95 371 1.6E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_204 37a88e5c3ab429315a01954749174b51 196 PIRSF PIRSF004749 2 188 3.7E-32 T 13-10-2018 IPR023635 Peptide deformylase AMF_204 37a88e5c3ab429315a01954749174b51 196 PRINTS PR01576 Peptide deformylase signature 35 64 5.8E-20 T 13-10-2018 IPR023635 Peptide deformylase AMF_204 37a88e5c3ab429315a01954749174b51 196 PRINTS PR01576 Peptide deformylase signature 141 170 5.8E-20 T 13-10-2018 IPR023635 Peptide deformylase AMF_204 37a88e5c3ab429315a01954749174b51 196 PRINTS PR01576 Peptide deformylase signature 109 120 5.8E-20 T 13-10-2018 IPR023635 Peptide deformylase AMF_204 37a88e5c3ab429315a01954749174b51 196 PRINTS PR01576 Peptide deformylase signature 122 140 5.8E-20 T 13-10-2018 IPR023635 Peptide deformylase AMF_204 37a88e5c3ab429315a01954749174b51 196 Hamap MF_00163 Peptide deformylase [def]. 3 187 20.751 T 13-10-2018 IPR023635 Peptide deformylase AMF_204 37a88e5c3ab429315a01954749174b51 196 Pfam PF01327 Polypeptide deformylase 6 170 1.1E-35 T 13-10-2018 IPR023635 Peptide deformylase AMF_204 37a88e5c3ab429315a01954749174b51 196 SUPERFAMILY SSF56420 14 172 3.01E-39 T 13-10-2018 IPR036821 Peptide deformylase superfamily AMF_204 37a88e5c3ab429315a01954749174b51 196 Gene3D G3DSA:3.90.45.10 1 186 3.2E-40 T 13-10-2018 IPR036821 Peptide deformylase superfamily AMF_478 a898e1aa41f509d8be4f83849be72294 691 Gene3D G3DSA:3.40.50.740 386 637 4.7E-24 T 13-10-2018 AMF_478 a898e1aa41f509d8be4f83849be72294 691 SUPERFAMILY SSF53706 213 626 2.24E-93 T 13-10-2018 AMF_478 a898e1aa41f509d8be4f83849be72294 691 SMART SM00929 83 123 4.8E-19 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_478 a898e1aa41f509d8be4f83849be72294 691 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 117 1.6E-15 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_478 a898e1aa41f509d8be4f83849be72294 691 Pfam PF00384 Molybdopterin oxidoreductase 271 604 2.1E-58 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_478 a898e1aa41f509d8be4f83849be72294 691 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_478 a898e1aa41f509d8be4f83849be72294 691 SUPERFAMILY SSF54862 76 211 4.06E-36 T 13-10-2018 AMF_478 a898e1aa41f509d8be4f83849be72294 691 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_478 a898e1aa41f509d8be4f83849be72294 691 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 601 1.1E-218 T 13-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_478 a898e1aa41f509d8be4f83849be72294 691 Pfam PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal 635 682 1.6E-13 T 13-10-2018 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_478 a898e1aa41f509d8be4f83849be72294 691 Gene3D G3DSA:3.30.70.20 126 204 3.3E-5 T 13-10-2018 AMF_478 a898e1aa41f509d8be4f83849be72294 691 SUPERFAMILY SSF54292 2 73 1.11E-20 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMF_478 a898e1aa41f509d8be4f83849be72294 691 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 145 155 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_478 a898e1aa41f509d8be4f83849be72294 691 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 75 2.4E-17 T 13-10-2018 AMF_478 a898e1aa41f509d8be4f83849be72294 691 Gene3D G3DSA:3.10.20.740 1 121 2.9E-42 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 Gene3D G3DSA:2.40.50.140 132 215 2.7E-6 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 Gene3D G3DSA:2.40.50.140 40 131 7.4E-14 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 Gene3D G3DSA:2.40.50.140 396 489 9.9E-18 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 Gene3D G3DSA:2.40.50.140 307 395 2.0E-25 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 385 482 3.07E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_701 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 293 405 3.0E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_701 efa48247d9877b5468aa40734370a03d 559 Pfam PF00575 S1 RNA binding domain 138 203 7.2E-7 T 13-10-2018 IPR003029 S1 domain GO:0003676 AMF_701 efa48247d9877b5468aa40734370a03d 559 Pfam PF00575 S1 RNA binding domain 221 298 1.3E-15 T 13-10-2018 IPR003029 S1 domain GO:0003676 AMF_701 efa48247d9877b5468aa40734370a03d 559 Pfam PF00575 S1 RNA binding domain 314 385 4.2E-17 T 13-10-2018 IPR003029 S1 domain GO:0003676 AMF_701 efa48247d9877b5468aa40734370a03d 559 Pfam PF00575 S1 RNA binding domain 50 118 4.4E-5 T 13-10-2018 IPR003029 S1 domain GO:0003676 AMF_701 efa48247d9877b5468aa40734370a03d 559 Pfam PF00575 S1 RNA binding domain 398 477 5.0E-7 T 13-10-2018 IPR003029 S1 domain GO:0003676 AMF_701 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 368 386 7.9E-55 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 116 135 7.9E-55 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 140 156 7.9E-55 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 158 175 7.9E-55 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 53 71 7.9E-55 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 328 347 7.9E-55 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 71 85 7.9E-55 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 250 271 7.9E-55 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 48 144 2.5E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_701 efa48247d9877b5468aa40734370a03d 559 Gene3D G3DSA:2.40.50.140 219 306 2.9E-26 T 13-10-2018 AMF_701 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 121 207 3.13E-12 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_701 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 221 314 1.79E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_701 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 135 203 1.3E-4 T 13-10-2018 IPR022967 RNA-binding domain, S1 AMF_701 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 51 119 9.0E-6 T 13-10-2018 IPR022967 RNA-binding domain, S1 AMF_701 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 492 559 7.4E-6 T 13-10-2018 IPR022967 RNA-binding domain, S1 AMF_701 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 400 477 2.8E-11 T 13-10-2018 IPR022967 RNA-binding domain, S1 AMF_701 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 222 298 5.8E-22 T 13-10-2018 IPR022967 RNA-binding domain, S1 AMF_701 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 313 385 2.4E-19 T 13-10-2018 IPR022967 RNA-binding domain, S1 AMF_701 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 473 558 2.42E-5 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_122 a940e2fc4bf5726b201e777a520d0e80 430 PIRSF PIRSF000412 5 427 2.8E-164 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMF_122 a940e2fc4bf5726b201e777a520d0e80 430 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 9 423 50.274 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMF_122 a940e2fc4bf5726b201e777a520d0e80 430 Gene3D G3DSA:3.40.640.10 39 290 1.4E-172 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMF_122 a940e2fc4bf5726b201e777a520d0e80 430 SUPERFAMILY SSF53383 13 422 4.32E-169 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMF_122 a940e2fc4bf5726b201e777a520d0e80 430 Gene3D G3DSA:3.90.1150.10 13 395 1.4E-172 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMF_122 a940e2fc4bf5726b201e777a520d0e80 430 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 224 240 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMF_122 a940e2fc4bf5726b201e777a520d0e80 430 Pfam PF00464 Serine hydroxymethyltransferase 13 386 1.1E-160 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 PRINTS PR00986 Valyl-tRNA synthetase signature 45 56 2.7E-17 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 PRINTS PR00986 Valyl-tRNA synthetase signature 501 519 2.7E-17 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 PRINTS PR00986 Valyl-tRNA synthetase signature 360 373 2.7E-17 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 PRINTS PR00986 Valyl-tRNA synthetase signature 235 252 2.7E-17 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 PRINTS PR00986 Valyl-tRNA synthetase signature 467 488 2.7E-17 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 Hamap MF_02005 Valine--tRNA ligase [valS]. 12 801 28.827 T 13-10-2018 IPR022874 Valine-tRNA ligase, type 2 GO:0004832 KEGG: 00970+6.1.1.9 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 52 63 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 Gene3D G3DSA:3.90.740.10 181 356 2.5E-228 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 Pfam PF08264 Anticodon-binding domain of tRNA 627 771 1.1E-30 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 SUPERFAMILY SSF47323 601 807 2.8E-44 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 27 587 1.5E-117 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 SUPERFAMILY SSF50677 199 355 3.14E-39 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 SUPERFAMILY SSF52374 7 595 7.15E-112 T 13-10-2018 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 Gene3D G3DSA:3.40.50.620 32 550 2.5E-228 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 TIGRFAM TIGR00422 valS: valine--tRNA ligase 14 812 6.6E-213 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMF_883 fe833d4921a155491eaf5a9b6b56af05 822 Gene3D G3DSA:1.10.730.10 13 759 2.5E-228 T 13-10-2018 AMF_510 03cca6c75f402ae92ee0521328755d34 593 Gene3D G3DSA:3.40.50.620 142 463 8.1E-136 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_510 03cca6c75f402ae92ee0521328755d34 593 PRINTS PR01038 Arginyl-tRNA synthetase signature 338 359 7.6E-24 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMF_510 03cca6c75f402ae92ee0521328755d34 593 PRINTS PR01038 Arginyl-tRNA synthetase signature 181 194 7.6E-24 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMF_510 03cca6c75f402ae92ee0521328755d34 593 PRINTS PR01038 Arginyl-tRNA synthetase signature 142 157 7.6E-24 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMF_510 03cca6c75f402ae92ee0521328755d34 593 PRINTS PR01038 Arginyl-tRNA synthetase signature 157 173 7.6E-24 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMF_510 03cca6c75f402ae92ee0521328755d34 593 SUPERFAMILY SSF55190 18 133 3.01E-15 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AMF_510 03cca6c75f402ae92ee0521328755d34 593 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 152 161 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_510 03cca6c75f402ae92ee0521328755d34 593 SMART SM01016 26 113 3.9E-17 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMF_510 03cca6c75f402ae92ee0521328755d34 593 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 52 592 1.9E-101 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMF_510 03cca6c75f402ae92ee0521328755d34 593 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 47 112 4.4E-12 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMF_510 03cca6c75f402ae92ee0521328755d34 593 Pfam PF00750 tRNA synthetases class I (R) 134 453 1.2E-14 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 AMF_510 03cca6c75f402ae92ee0521328755d34 593 Pfam PF05746 DALR anticodon binding domain 469 592 5.3E-23 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMF_510 03cca6c75f402ae92ee0521328755d34 593 Gene3D G3DSA:3.30.1360.70 31 138 7.9E-14 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AMF_510 03cca6c75f402ae92ee0521328755d34 593 SMART SM00836 469 592 1.9E-46 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMF_510 03cca6c75f402ae92ee0521328755d34 593 SUPERFAMILY SSF47323 464 592 2.94E-30 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_510 03cca6c75f402ae92ee0521328755d34 593 SUPERFAMILY SSF52374 136 480 1.13E-82 T 13-10-2018 AMF_510 03cca6c75f402ae92ee0521328755d34 593 Gene3D G3DSA:1.10.730.10 464 592 8.1E-136 T 13-10-2018 AMF_510 03cca6c75f402ae92ee0521328755d34 593 Hamap MF_00123 Arginine--tRNA ligase [argS]. 43 592 22.279 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMF_379 fedd5cf25daff10a878b6fa157bd8f49 170 SUPERFAMILY SSF52374 7 162 5.63E-38 T 13-10-2018 AMF_379 fedd5cf25daff10a878b6fa157bd8f49 170 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 9 160 7.5E-54 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMF_379 fedd5cf25daff10a878b6fa157bd8f49 170 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 7 25 4.4E-35 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMF_379 fedd5cf25daff10a878b6fa157bd8f49 170 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 25 46 4.4E-35 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMF_379 fedd5cf25daff10a878b6fa157bd8f49 170 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 118 140 4.4E-35 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMF_379 fedd5cf25daff10a878b6fa157bd8f49 170 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 91 107 4.4E-35 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMF_379 fedd5cf25daff10a878b6fa157bd8f49 170 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 9 60 2.8E-15 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMF_379 fedd5cf25daff10a878b6fa157bd8f49 170 Gene3D G3DSA:3.40.50.620 5 166 3.6E-49 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_379 fedd5cf25daff10a878b6fa157bd8f49 170 Pfam PF01467 Cytidylyltransferase-like 10 139 1.9E-17 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMF_379 fedd5cf25daff10a878b6fa157bd8f49 170 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 7 164 31.519 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 9 202 1.1E-34 T 13-10-2018 IPR003111 Lon, substrate-binding domain AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 680 699 1.0E-52 T 13-10-2018 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 602 618 1.0E-52 T 13-10-2018 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 733 751 1.0E-52 T 13-10-2018 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 710 729 1.0E-52 T 13-10-2018 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 361 380 1.0E-52 T 13-10-2018 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Gene3D G3DSA:3.40.50.300 319 495 3.1E-62 T 13-10-2018 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 SUPERFAMILY SSF52540 313 568 1.58E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 357 493 8.7E-20 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 SUPERFAMILY SSF54211 602 775 9.1E-55 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Gene3D G3DSA:3.30.230.10 592 779 8.2E-74 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 SMART SM00464 8 204 2.6E-52 T 13-10-2018 IPR003111 Lon, substrate-binding domain AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PIRSF PIRSF001174 1 781 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Gene3D G3DSA:1.10.8.60 496 591 5.1E-27 T 13-10-2018 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Hamap MF_01973 Lon protease [lon]. 9 779 64.29 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 683 691 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Gene3D G3DSA:2.30.130.40 1 118 5.4E-30 T 13-10-2018 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 577 779 5.0E-88 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 SUPERFAMILY SSF88697 8 202 1.57E-40 T 13-10-2018 IPR015947 PUA-like superfamily AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 SMART SM00382 353 497 1.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 TIGRFAM TIGR00763 lon: endopeptidase La 10 777 4.3E-273 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMF_232 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Gene3D G3DSA:1.20.58.1480 123 247 1.9E-31 T 13-10-2018 AMF_274 b4a09fef6b968a9de82a4b59e6ce26ba 210 SMART SM00478 36 183 1.0E-53 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMF_274 b4a09fef6b968a9de82a4b59e6ce26ba 210 Gene3D G3DSA:1.10.340.30 19 130 7.5E-73 T 13-10-2018 AMF_274 b4a09fef6b968a9de82a4b59e6ce26ba 210 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 32 166 3.7E-21 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMF_274 b4a09fef6b968a9de82a4b59e6ce26ba 210 PIRSF PIRSF001435 2 209 3.9E-45 T 13-10-2018 AMF_274 b4a09fef6b968a9de82a4b59e6ce26ba 210 Pfam PF00633 Helix-hairpin-helix motif 98 124 1.3E-5 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AMF_274 b4a09fef6b968a9de82a4b59e6ce26ba 210 Hamap MF_00942 Endonuclease III [nth]. 1 207 35.778 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMF_274 b4a09fef6b968a9de82a4b59e6ce26ba 210 Gene3D G3DSA:1.10.1670.10 10 201 7.5E-73 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMF_274 b4a09fef6b968a9de82a4b59e6ce26ba 210 ProSitePatterns PS01155 Endonuclease III family signature. 100 129 - T 13-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AMF_274 b4a09fef6b968a9de82a4b59e6ce26ba 210 SMART SM00525 184 204 5.3E-5 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AMF_274 b4a09fef6b968a9de82a4b59e6ce26ba 210 TIGRFAM TIGR01083 nth: endonuclease III 7 192 6.1E-78 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMF_274 b4a09fef6b968a9de82a4b59e6ce26ba 210 SUPERFAMILY SSF48150 9 205 8.01E-67 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 ProSitePatterns PS01244 Aconitase family signature 2. 498 511 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 Gene3D G3DSA:3.20.19.10 662 893 1.1E-88 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 ProSitePatterns PS00450 Aconitase family signature 1. 432 448 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 Gene3D G3DSA:1.10.1440.20 596 656 5.2E-16 T 13-10-2018 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 PRINTS PR00415 Aconitase family signature 236 251 4.8E-37 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 PRINTS PR00415 Aconitase family signature 312 325 4.8E-37 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 PRINTS PR00415 Aconitase family signature 222 235 4.8E-37 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 PRINTS PR00415 Aconitase family signature 193 201 4.8E-37 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 PRINTS PR00415 Aconitase family signature 298 311 4.8E-37 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 PRINTS PR00415 Aconitase family signature 391 405 4.8E-37 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 PRINTS PR00415 Aconitase family signature 169 182 4.8E-37 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 PRINTS PR00415 Aconitase family signature 436 447 4.8E-37 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 PRINTS PR00415 Aconitase family signature 498 511 4.8E-37 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 SUPERFAMILY SSF53732 28 631 6.15E-212 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 SUPERFAMILY SSF52016 636 891 8.04E-73 T 13-10-2018 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 44 892 0.0 T 13-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 Pfam PF00694 Aconitase C-terminal domain 699 826 1.5E-41 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 Gene3D G3DSA:3.30.499.20 29 391 5.0E-151 T 13-10-2018 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 Gene3D G3DSA:3.30.499.10 392 595 2.3E-87 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMF_786 7b52d5836b665d11c4f965e76a7f7c8d 901 Pfam PF00330 Aconitase family (aconitate hydratase) 101 567 4.3E-172 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMF_377 b6e6e8630b202eff84b0478700e357eb 425 SUPERFAMILY SSF52954 324 424 1.08E-22 T 13-10-2018 AMF_377 b6e6e8630b202eff84b0478700e357eb 425 Gene3D G3DSA:3.30.930.10 1 322 1.3E-106 T 13-10-2018 AMF_377 b6e6e8630b202eff84b0478700e357eb 425 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 246 1.1E-96 T 13-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMF_377 b6e6e8630b202eff84b0478700e357eb 425 Hamap MF_01570 Proline--tRNA ligase [proS]. 1 425 59.955 T 13-10-2018 IPR023716 Proline-tRNA ligase, class IIa, type 2 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMF_377 b6e6e8630b202eff84b0478700e357eb 425 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 319 5.2E-40 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_377 b6e6e8630b202eff84b0478700e357eb 425 SUPERFAMILY SSF55681 16 339 1.8E-90 T 13-10-2018 AMF_377 b6e6e8630b202eff84b0478700e357eb 425 Gene3D G3DSA:3.40.50.800 323 425 2.3E-22 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily AMF_377 b6e6e8630b202eff84b0478700e357eb 425 Pfam PF03129 Anticodon binding domain 336 424 1.5E-12 T 13-10-2018 IPR004154 Anticodon-binding AMF_377 b6e6e8630b202eff84b0478700e357eb 425 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.7E-14 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMF_377 b6e6e8630b202eff84b0478700e357eb 425 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.7E-14 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMF_377 b6e6e8630b202eff84b0478700e357eb 425 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.7E-14 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMF_377 b6e6e8630b202eff84b0478700e357eb 425 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.7E-14 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 Gene3D G3DSA:1.10.730.10 13 760 1.1E-288 T 13-10-2018 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 478 496 9.4E-44 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 183 196 9.4E-44 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 151 167 9.4E-44 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 213 232 9.4E-44 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 125 142 9.4E-44 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 514 536 9.4E-44 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 PRINTS PR00985 Leucyl-tRNA synthetase signature 547 557 9.4E-44 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 Gene3D G3DSA:3.10.330.110 557 603 1.1E-288 T 13-10-2018 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 7 828 20.794 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 220 395 1.2E-47 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 Gene3D G3DSA:3.10.20.590 769 829 2.9E-13 T 13-10-2018 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 SUPERFAMILY SSF52374 6 643 1.9E-137 T 13-10-2018 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 593 634 4.6E-10 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 409 561 1.7E-11 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 40 51 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 SUPERFAMILY SSF50677 237 406 3.77E-42 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 8 828 1.2E-284 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 Pfam PF08264 Anticodon-binding domain of tRNA 671 789 1.2E-17 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 Gene3D G3DSA:3.40.50.620 31 556 1.1E-288 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 Gene3D G3DSA:3.90.740.10 225 405 1.1E-288 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 SUPERFAMILY SSF47323 638 828 6.17E-31 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_327 7c9cb26ebb5734d4f5b8657b39d8ee24 829 Pfam PF09334 tRNA synthetases class I (M) 37 169 2.6E-19 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_537 5abe0317c490f81b573b102cf2646632 619 SUPERFAMILY SSF52540 11 218 2.07E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_537 5abe0317c490f81b573b102cf2646632 619 SMART SM00838 408 496 0.0022 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AMF_537 5abe0317c490f81b573b102cf2646632 619 SUPERFAMILY SSF54980 315 400 1.91E-11 T 13-10-2018 IPR035647 EF-G domain III/V-like AMF_537 5abe0317c490f81b573b102cf2646632 619 Gene3D G3DSA:3.30.70.240 402 494 1.1E-125 T 13-10-2018 AMF_537 5abe0317c490f81b573b102cf2646632 619 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 18 165 1.4E-24 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_537 5abe0317c490f81b573b102cf2646632 619 Gene3D G3DSA:2.40.50.250 495 611 1.1E-125 T 13-10-2018 AMF_537 5abe0317c490f81b573b102cf2646632 619 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site AMF_537 5abe0317c490f81b573b102cf2646632 619 SUPERFAMILY SSF54980 411 525 1.53E-28 T 13-10-2018 IPR035647 EF-G domain III/V-like AMF_537 5abe0317c490f81b573b102cf2646632 619 Pfam PF00679 Elongation factor G C-terminus 409 492 3.8E-21 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AMF_537 5abe0317c490f81b573b102cf2646632 619 Gene3D G3DSA:3.40.50.300 14 209 3.7E-63 T 13-10-2018 AMF_537 5abe0317c490f81b573b102cf2646632 619 Pfam PF00009 Elongation factor Tu GTP binding domain 16 191 2.3E-55 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_537 5abe0317c490f81b573b102cf2646632 619 Gene3D G3DSA:3.30.70.870 319 602 1.1E-125 T 13-10-2018 AMF_537 5abe0317c490f81b573b102cf2646632 619 PRINTS PR00315 GTP-binding elongation factor signature 63 71 2.8E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_537 5abe0317c490f81b573b102cf2646632 619 PRINTS PR00315 GTP-binding elongation factor signature 83 93 2.8E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_537 5abe0317c490f81b573b102cf2646632 619 PRINTS PR00315 GTP-binding elongation factor signature 99 110 2.8E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_537 5abe0317c490f81b573b102cf2646632 619 PRINTS PR00315 GTP-binding elongation factor signature 135 144 2.8E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_537 5abe0317c490f81b573b102cf2646632 619 PRINTS PR00315 GTP-binding elongation factor signature 19 32 2.8E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_537 5abe0317c490f81b573b102cf2646632 619 Pfam PF03144 Elongation factor Tu domain 2 231 301 2.9E-9 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMF_537 5abe0317c490f81b573b102cf2646632 619 SUPERFAMILY SSF50447 163 311 1.79E-27 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMF_537 5abe0317c490f81b573b102cf2646632 619 Gene3D G3DSA:2.40.30.10 211 312 2.0E-27 T 13-10-2018 AMF_537 5abe0317c490f81b573b102cf2646632 619 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 17 611 3.1E-270 T 13-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 AMF_643 1d490d1dba7259552ef133a001ed6ee0 164 SUPERFAMILY SSF53098 24 157 1.97E-35 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AMF_643 1d490d1dba7259552ef133a001ed6ee0 164 Gene3D G3DSA:3.30.420.140 22 162 6.4E-39 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 AMF_643 1d490d1dba7259552ef133a001ed6ee0 164 Pfam PF03652 Holliday junction resolvase 25 156 3.4E-37 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMF_643 1d490d1dba7259552ef133a001ed6ee0 164 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 27 156 2.5E-24 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMF_643 1d490d1dba7259552ef133a001ed6ee0 164 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 24 159 20.605 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMF_643 1d490d1dba7259552ef133a001ed6ee0 164 SMART SM00732 24 124 3.9E-25 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 Gene3D G3DSA:3.30.1490.20 120 188 9.6E-23 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 Gene3D G3DSA:3.30.470.20 189 326 1.8E-52 T 13-10-2018 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 SMART SM01209 101 293 7.5E-109 T 13-10-2018 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 1.8E-28 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 418 7.4E-143 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 Gene3D G3DSA:3.40.50.20 2 93 5.1E-31 T 13-10-2018 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 SUPERFAMILY SSF51246 326 418 7.14E-26 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 287 294 - T 13-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 SMART SM01210 327 419 2.0E-41 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 SUPERFAMILY SSF52440 1 100 4.6E-29 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 329 418 5.8E-26 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 Gene3D G3DSA:3.90.600.10 327 419 4.9E-31 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 293 6.7E-68 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 SUPERFAMILY SSF56059 102 319 3.01E-54 T 13-10-2018 AMF_770 cda5a4049021aed5465617cc9bcbeef2 420 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 419 36.569 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMF_295 7a0d2a117735c04a2a8a5d7a96fb236a 930 SMART SM00861 591 784 1.2E-61 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_295 7a0d2a117735c04a2a8a5d7a96fb236a 930 Gene3D G3DSA:3.40.50.12470 555 799 1.3E-163 T 13-10-2018 AMF_295 7a0d2a117735c04a2a8a5d7a96fb236a 930 Gene3D G3DSA:3.40.50.970 164 525 2.2E-133 T 13-10-2018 AMF_295 7a0d2a117735c04a2a8a5d7a96fb236a 930 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 789 929 2.6E-45 T 13-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMF_295 7a0d2a117735c04a2a8a5d7a96fb236a 930 Pfam PF00676 Dehydrogenase E1 component 210 520 4.9E-49 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AMF_295 7a0d2a117735c04a2a8a5d7a96fb236a 930 SUPERFAMILY SSF52518 586 790 2.53E-50 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AMF_295 7a0d2a117735c04a2a8a5d7a96fb236a 930 Gene3D G3DSA:3.40.50.11610 721 926 1.3E-163 T 13-10-2018 AMF_295 7a0d2a117735c04a2a8a5d7a96fb236a 930 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 81 928 1.0E-293 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMF_295 7a0d2a117735c04a2a8a5d7a96fb236a 930 Pfam PF02779 Transketolase, pyrimidine binding domain 590 785 6.5E-65 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_295 7a0d2a117735c04a2a8a5d7a96fb236a 930 SUPERFAMILY SSF52518 160 536 5.4E-78 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AMF_295 7a0d2a117735c04a2a8a5d7a96fb236a 930 PIRSF PIRSF000157 28 930 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMF_012 f3ed76b343cf56f50d2567efcb344c50 211 SUPERFAMILY SSF51064 151 206 2.62E-16 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AMF_012 f3ed76b343cf56f50d2567efcb344c50 211 Pfam PF01025 GrpE 55 205 5.9E-43 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMF_012 f3ed76b343cf56f50d2567efcb344c50 211 Hamap MF_01151 Protein GrpE [grpE]. 58 205 16.426 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMF_012 f3ed76b343cf56f50d2567efcb344c50 211 Gene3D G3DSA:3.90.20.20 49 147 9.8E-15 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AMF_012 f3ed76b343cf56f50d2567efcb344c50 211 Gene3D G3DSA:2.30.22.10 149 205 4.5E-19 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AMF_012 f3ed76b343cf56f50d2567efcb344c50 211 PRINTS PR00773 GrpE protein signature 184 203 8.7E-18 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMF_012 f3ed76b343cf56f50d2567efcb344c50 211 PRINTS PR00773 GrpE protein signature 106 121 8.7E-18 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMF_012 f3ed76b343cf56f50d2567efcb344c50 211 PRINTS PR00773 GrpE protein signature 157 172 8.7E-18 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMF_012 f3ed76b343cf56f50d2567efcb344c50 211 PRINTS PR00773 GrpE protein signature 78 94 8.7E-18 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMF_012 f3ed76b343cf56f50d2567efcb344c50 211 SUPERFAMILY SSF58014 62 149 2.48E-19 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AMF_219 123b6f61616ac871de3403410f5fcc39 260 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 1 249 3.6E-79 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMF_219 123b6f61616ac871de3403410f5fcc39 260 Gene3D G3DSA:3.40.1190.20 1 257 2.0E-84 T 13-10-2018 IPR029056 Ribokinase-like AMF_219 123b6f61616ac871de3403410f5fcc39 260 Pfam PF08543 Phosphomethylpyrimidine kinase 8 247 1.5E-81 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AMF_219 123b6f61616ac871de3403410f5fcc39 260 SUPERFAMILY SSF53613 1 252 1.49E-67 T 13-10-2018 IPR029056 Ribokinase-like AMF_652 15f364488ef3cc00007f5c3711db4156 347 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 11 333 1.8E-89 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AMF_652 15f364488ef3cc00007f5c3711db4156 347 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 347 119.066 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AMF_652 15f364488ef3cc00007f5c3711db4156 347 SUPERFAMILY SSF53659 10 334 3.95E-86 T 13-10-2018 AMF_652 15f364488ef3cc00007f5c3711db4156 347 Pfam PF02504 Fatty acid synthesis protein 9 334 9.9E-90 T 13-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 AMF_652 15f364488ef3cc00007f5c3711db4156 347 PIRSF PIRSF002465 7 346 1.4E-103 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AMF_652 15f364488ef3cc00007f5c3711db4156 347 Gene3D G3DSA:3.40.718.10 8 346 4.5E-106 T 13-10-2018 AMF_722 f690f062e6339eef0ff59fb8aff96219 214 Gene3D G3DSA:3.30.930.10 8 212 5.7E-61 T 13-10-2018 AMF_722 f690f062e6339eef0ff59fb8aff96219 214 SUPERFAMILY SSF55681 13 211 1.57E-57 T 13-10-2018 AMF_722 f690f062e6339eef0ff59fb8aff96219 214 Hamap MF_00013 Octanoyltransferase [lipB]. 8 214 31.459 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMF_722 f690f062e6339eef0ff59fb8aff96219 214 Pfam PF03099 Biotin/lipoate A/B protein ligase family 66 168 3.1E-8 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMF_722 f690f062e6339eef0ff59fb8aff96219 214 PIRSF PIRSF016262 8 214 1.6E-55 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMF_722 f690f062e6339eef0ff59fb8aff96219 214 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 81 133 1.0E-24 T 13-10-2018 AMF_722 f690f062e6339eef0ff59fb8aff96219 214 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 37 192 1.1E-43 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 Gene3D G3DSA:1.10.3120.10 151 448 1.7E-50 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 SUPERFAMILY SSF109998 289 461 2.88E-28 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 Pfam PF05697 Bacterial trigger factor protein (TF) 35 179 1.1E-25 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 PIRSF PIRSF003095 30 462 3.5E-69 T 13-10-2018 IPR005215 Trigger factor GO:0015031 AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 SUPERFAMILY SSF102735 32 162 1.57E-24 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 Hamap MF_00303 Trigger factor [tig]. 30 450 15.062 T 13-10-2018 IPR005215 Trigger factor GO:0015031 AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 309 444 7.8E-12 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 TIGRFAM TIGR00115 tig: trigger factor 40 443 2.5E-99 T 13-10-2018 IPR005215 Trigger factor GO:0015031 AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 195 263 4.9E-6 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 Gene3D G3DSA:3.30.70.1050 29 150 2.9E-24 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 Gene3D G3DSA:3.10.50.40 186 285 1.7E-50 T 13-10-2018 AMF_229 cbb6b5bd38fc4c0ac1c9d0c21ab1ec05 466 SUPERFAMILY SSF54534 169 283 5.3E-19 T 13-10-2018 AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 Gene3D G3DSA:3.40.50.300 138 324 3.0E-41 T 13-10-2018 AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 Gene3D G3DSA:1.10.8.60 326 404 1.7E-17 T 13-10-2018 AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 366 375 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 SMART SM00448 13 126 1.3E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 SMART SM00382 171 316 9.8E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 Gene3D G3DSA:1.10.10.60 410 464 1.8E-14 T 13-10-2018 AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 SUPERFAMILY SSF52540 150 397 1.83E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 SUPERFAMILY SSF52172 14 194 1.85E-38 T 13-10-2018 IPR011006 CheY-like superfamily AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 SUPERFAMILY SSF46689 366 463 4.93E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 Pfam PF02954 Bacterial regulatory protein, Fis family 421 460 1.9E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 Pfam PF00158 Sigma-54 interaction domain 151 319 4.1E-37 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 Gene3D G3DSA:3.40.50.2300 14 133 1.1E-31 T 13-10-2018 AMF_153 bec14557d9ebe14da21e03adb5e7dd5c 466 Pfam PF00072 Response regulator receiver domain 15 126 2.7E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMF_467 cdc915217432e8878cecb5c2d8ed1ddc 232 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 4 197 3.1E-48 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_467 cdc915217432e8878cecb5c2d8ed1ddc 232 Pfam PF00929 Exonuclease 6 164 5.0E-41 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMF_467 cdc915217432e8878cecb5c2d8ed1ddc 232 SMART SM00479 4 173 1.5E-53 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMF_467 cdc915217432e8878cecb5c2d8ed1ddc 232 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 4 224 1.0E-80 T 13-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_467 cdc915217432e8878cecb5c2d8ed1ddc 232 Gene3D G3DSA:3.30.420.10 2 172 1.2E-53 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMF_467 cdc915217432e8878cecb5c2d8ed1ddc 232 SUPERFAMILY SSF53098 4 172 2.94E-55 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AMF_548 5154a9d8cbdcbb0506266b36662f3ba0 396 PIRSF PIRSF006205 6 392 2.4E-123 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMF_548 5154a9d8cbdcbb0506266b36662f3ba0 396 Gene3D G3DSA:3.40.50.720 4 153 8.3E-41 T 13-10-2018 AMF_548 5154a9d8cbdcbb0506266b36662f3ba0 396 SUPERFAMILY SSF55347 129 265 5.56E-53 T 13-10-2018 AMF_548 5154a9d8cbdcbb0506266b36662f3ba0 396 SUPERFAMILY SSF51735 7 153 1.19E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_548 5154a9d8cbdcbb0506266b36662f3ba0 396 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 9 135 2.5E-29 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMF_548 5154a9d8cbdcbb0506266b36662f3ba0 396 SUPERFAMILY SSF69055 293 387 2.22E-24 T 13-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMF_548 5154a9d8cbdcbb0506266b36662f3ba0 396 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 7 383 1.5E-108 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMF_548 5154a9d8cbdcbb0506266b36662f3ba0 396 Gene3D G3DSA:1.10.1740.10 303 391 3.1E-19 T 13-10-2018 AMF_548 5154a9d8cbdcbb0506266b36662f3ba0 396 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 9 385 38.683 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMF_548 5154a9d8cbdcbb0506266b36662f3ba0 396 Pfam PF13288 DXP reductoisomerase C-terminal domain 262 379 5.8E-29 T 13-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMF_548 5154a9d8cbdcbb0506266b36662f3ba0 396 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 149 230 1.5E-37 T 13-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 SUPERFAMILY SSF52540 97 379 1.72E-99 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_887 786afba0af49aaf23c4c0cab48190e95 507 Gene3D G3DSA:1.20.150.20 381 507 2.0E-40 T 13-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 SUPERFAMILY SSF50615 11 94 3.66E-23 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 PIRSF PIRSF039088 2 507 3.4E-239 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 364 373 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 Gene3D G3DSA:3.40.50.300 95 380 3.0E-127 T 13-10-2018 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 373 1.4E-73 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 26 93 7.9E-12 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 SUPERFAMILY SSF47917 382 507 1.7E-38 T 13-10-2018 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 6 506 3.4E-227 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 Gene3D G3DSA:2.40.30.20 3 94 1.5E-26 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 380 502 1.9E-39 T 13-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_887 786afba0af49aaf23c4c0cab48190e95 507 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 504 46.856 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_675 becb16116749c6217d5506660e94689f 123 Gene3D G3DSA:1.10.8.50 1 72 3.3E-24 T 13-10-2018 AMF_675 becb16116749c6217d5506660e94689f 123 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 13-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_675 becb16116749c6217d5506660e94689f 123 Pfam PF00416 Ribosomal protein S13/S18 3 109 8.8E-28 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_675 becb16116749c6217d5506660e94689f 123 PIRSF PIRSF002134 1 123 3.6E-39 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_675 becb16116749c6217d5506660e94689f 123 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 6.7E-50 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_675 becb16116749c6217d5506660e94689f 123 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 119 25.382 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_675 becb16116749c6217d5506660e94689f 123 SUPERFAMILY SSF46946 2 120 5.49E-42 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMF_675 becb16116749c6217d5506660e94689f 123 Gene3D G3DSA:4.10.910.10 73 118 6.8E-25 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_521 3d15a1358a958a325c9041b87fd872a7 489 Pfam PF01425 Amidase 26 467 6.7E-135 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_521 3d15a1358a958a325c9041b87fd872a7 489 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 13 480 83.63 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_521 3d15a1358a958a325c9041b87fd872a7 489 SUPERFAMILY SSF75304 4 482 3.79E-144 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_521 3d15a1358a958a325c9041b87fd872a7 489 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 476 3.0E-160 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_521 3d15a1358a958a325c9041b87fd872a7 489 Gene3D G3DSA:3.90.1300.10 5 481 6.4E-167 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_521 3d15a1358a958a325c9041b87fd872a7 489 ProSitePatterns PS00571 Amidases signature. 156 187 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMF_742 848764aa4f049227eb19cccda7ddfa61 324 SUPERFAMILY SSF102114 4 311 4.84E-87 T 13-10-2018 AMF_742 848764aa4f049227eb19cccda7ddfa61 324 Pfam PF04055 Radical SAM superfamily 50 200 7.3E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMF_742 848764aa4f049227eb19cccda7ddfa61 324 SMART SM00729 42 254 2.4E-35 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMF_742 848764aa4f049227eb19cccda7ddfa61 324 Hamap MF_01694 Biotin synthase [bioB]. 4 312 42.33 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMF_742 848764aa4f049227eb19cccda7ddfa61 324 Gene3D G3DSA:3.20.20.70 3 314 1.7E-124 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_742 848764aa4f049227eb19cccda7ddfa61 324 TIGRFAM TIGR00433 bioB: biotin synthase 13 309 3.0E-121 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMF_742 848764aa4f049227eb19cccda7ddfa61 324 SMART SM00876 219 311 2.5E-47 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMF_742 848764aa4f049227eb19cccda7ddfa61 324 PIRSF PIRSF001619 1 318 1.8E-129 T 13-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMF_742 848764aa4f049227eb19cccda7ddfa61 324 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 219 309 4.7E-20 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 426 7.9E-154 T 13-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 268 281 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 Pfam PF02978 Signal peptide binding domain 326 426 2.9E-26 T 13-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 SUPERFAMILY SSF47446 326 426 2.78E-29 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 Pfam PF00448 SRP54-type protein, GTPase domain 101 294 2.9E-66 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 Gene3D G3DSA:1.10.260.30 312 441 5.8E-36 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 SMART SM00963 1 86 5.9E-21 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 Pfam PF02881 SRP54-type protein, helical bundle domain 5 80 1.6E-14 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 SUPERFAMILY SSF52540 42 353 6.64E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 SMART SM00382 99 246 2.4E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 Gene3D G3DSA:3.40.50.300 90 284 3.4E-106 T 13-10-2018 AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 Gene3D G3DSA:1.20.120.140 5 305 3.4E-106 T 13-10-2018 AMF_626 f9f36b585302b5c399d9117c6acec4a0 451 SMART SM00962 100 295 6.9E-99 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMF_646 a8cc8b6a3b67da4a348ff4bf40c7952a 315 SUPERFAMILY SSF54534 219 283 4.32E-8 T 13-10-2018 AMF_646 a8cc8b6a3b67da4a348ff4bf40c7952a 315 Gene3D G3DSA:3.10.50.40 207 302 4.2E-6 T 13-10-2018 AMF_625 cc67e4071810393c35f3a0632a463e5f 297 Pfam PF01926 50S ribosome-binding GTPase 12 126 1.3E-18 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_625 cc67e4071810393c35f3a0632a463e5f 297 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 164 1.1E-17 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_625 cc67e4071810393c35f3a0632a463e5f 297 TIGRFAM TIGR00436 era: GTP-binding protein Era 12 279 3.3E-60 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_625 cc67e4071810393c35f3a0632a463e5f 297 Gene3D G3DSA:3.40.50.300 3 181 1.2E-38 T 13-10-2018 AMF_625 cc67e4071810393c35f3a0632a463e5f 297 Pfam PF07650 KH domain 209 285 4.1E-15 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_625 cc67e4071810393c35f3a0632a463e5f 297 SUPERFAMILY SSF52540 9 238 4.73E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_625 cc67e4071810393c35f3a0632a463e5f 297 Hamap MF_00367 GTPase Era [era]. 7 297 27.424 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_625 cc67e4071810393c35f3a0632a463e5f 297 Gene3D G3DSA:3.30.300.20 186 296 9.1E-31 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Pfam PF04997 RNA polymerase Rpb1, domain 1 14 343 8.4E-72 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:1.10.150.390 1307 1367 4.2E-27 T 13-10-2018 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Pfam PF00623 RNA polymerase Rpb1, domain 2 345 486 5.4E-33 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:1.10.132.30 641 781 6.6E-62 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Pfam PF04998 RNA polymerase Rpb1, domain 5 757 1306 1.7E-68 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:1.10.274.100 562 640 2.5E-14 T 13-10-2018 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:1.10.274.100 491 561 2.7E-17 T 13-10-2018 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 SUPERFAMILY SSF64484 15 1354 0.0 T 13-10-2018 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 SMART SM00663 235 515 9.3E-159 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:2.40.50.100 939 1013 7.6E-21 T 13-10-2018 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Pfam PF04983 RNA polymerase Rpb1, domain 3 490 644 3.3E-23 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Pfam PF05000 RNA polymerase Rpb1, domain 4 673 754 9.4E-17 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:1.10.40.90 375 417 7.8E-19 T 13-10-2018 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:2.40.50.100 1140 1206 2.0E-60 T 13-10-2018 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 18 1010 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 9 1368 17.668 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:1.10.1790.20 1124 1305 2.0E-60 T 13-10-2018 AMF_195 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:2.40.50.100 1014 1115 6.1E-29 T 13-10-2018 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 10 114 9.6E-16 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 Gene3D G3DSA:3.30.930.10 112 435 2.7E-111 T 13-10-2018 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 TIGRFAM TIGR00414 serS: serine--tRNA ligase 11 424 7.2E-144 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 SUPERFAMILY SSF55681 123 429 2.93E-88 T 13-10-2018 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 Gene3D G3DSA:1.10.287.40 9 111 7.2E-15 T 13-10-2018 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 PRINTS PR00981 Seryl-tRNA synthetase signature 269 281 1.1E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 PRINTS PR00981 Seryl-tRNA synthetase signature 321 334 1.1E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 PRINTS PR00981 Seryl-tRNA synthetase signature 356 372 1.1E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 PRINTS PR00981 Seryl-tRNA synthetase signature 338 354 1.1E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 PRINTS PR00981 Seryl-tRNA synthetase signature 281 294 1.1E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 SUPERFAMILY SSF46589 10 119 1.15E-18 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 PIRSF PIRSF001529 9 433 2.3E-150 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 Hamap MF_00176 Serine--tRNA ligase [serS]. 9 429 37.245 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMF_562 598923fdab8df2675de2bf5a39ac154c 437 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 228 407 8.3E-31 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_492 f9c46ab1dbb1ba01271384561099c0db 533 SUPERFAMILY SSF52374 25 338 1.07E-56 T 13-10-2018 AMF_492 f9c46ab1dbb1ba01271384561099c0db 533 Gene3D G3DSA:2.30.30.300 191 236 1.7E-73 T 13-10-2018 IPR023386 Lysine-tRNA ligase, insertion domain superfamily GO:0004824 KEGG: 00970+6.1.1.6 AMF_492 f9c46ab1dbb1ba01271384561099c0db 533 SUPERFAMILY SSF48163 337 526 3.4E-32 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMF_492 f9c46ab1dbb1ba01271384561099c0db 533 TIGRFAM TIGR00467 lysS_arch: lysine--tRNA ligase 31 525 3.9E-57 T 13-10-2018 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMF_492 f9c46ab1dbb1ba01271384561099c0db 533 Pfam PF01921 tRNA synthetases class I (K) 24 370 8.6E-123 T 13-10-2018 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMF_492 f9c46ab1dbb1ba01271384561099c0db 533 Gene3D G3DSA:1.10.10.350 437 526 6.1E-16 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMF_492 f9c46ab1dbb1ba01271384561099c0db 533 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 51 60 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_492 f9c46ab1dbb1ba01271384561099c0db 533 Gene3D G3DSA:3.40.50.620 25 289 1.7E-73 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_492 f9c46ab1dbb1ba01271384561099c0db 533 Hamap MF_00177 Lysine--tRNA ligase [lysS]. 23 527 28.475 T 13-10-2018 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMF_868 2815a41c71e0bbd58445907c3582b643 194 PIRSF PIRSF036773 2 194 1.6E-65 T 13-10-2018 IPR035433 NFU1-like AMF_868 2815a41c71e0bbd58445907c3582b643 194 Pfam PF01106 NifU-like domain 126 192 2.1E-26 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMF_868 2815a41c71e0bbd58445907c3582b643 194 SUPERFAMILY SSF110836 5 94 6.41E-26 T 13-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily AMF_868 2815a41c71e0bbd58445907c3582b643 194 SUPERFAMILY SSF117916 112 194 1.02E-25 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMF_868 2815a41c71e0bbd58445907c3582b643 194 Gene3D G3DSA:3.30.300.130 115 194 4.2E-27 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMF_868 2815a41c71e0bbd58445907c3582b643 194 SMART SM00932 8 95 1.4E-39 T 13-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal AMF_868 2815a41c71e0bbd58445907c3582b643 194 Gene3D G3DSA:3.30.1370.70 2 99 4.5E-26 T 13-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily AMF_868 2815a41c71e0bbd58445907c3582b643 194 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 134 194 4.0E-29 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMF_868 2815a41c71e0bbd58445907c3582b643 194 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 8 93 3.1E-25 T 13-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal AMF_820 cca5767931f8b29be51490518846a878 265 Pfam PF00557 Metallopeptidase family M24 16 246 2.5E-50 T 13-10-2018 IPR000994 Peptidase M24 AMF_820 cca5767931f8b29be51490518846a878 265 Gene3D G3DSA:3.90.230.10 4 264 5.5E-105 T 13-10-2018 AMF_820 cca5767931f8b29be51490518846a878 265 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 171 189 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMF_820 cca5767931f8b29be51490518846a878 265 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 7 253 1.3E-91 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMF_820 cca5767931f8b29be51490518846a878 265 Hamap MF_01974 Methionine aminopeptidase [map]. 7 255 40.029 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMF_820 cca5767931f8b29be51490518846a878 265 SUPERFAMILY SSF55920 7 257 2.09E-83 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like AMF_820 cca5767931f8b29be51490518846a878 265 PRINTS PR00599 Methionine aminopeptidase-1 signature 165 177 1.1E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMF_820 cca5767931f8b29be51490518846a878 265 PRINTS PR00599 Methionine aminopeptidase-1 signature 196 208 1.1E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMF_820 cca5767931f8b29be51490518846a878 265 PRINTS PR00599 Methionine aminopeptidase-1 signature 72 85 1.1E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMF_820 cca5767931f8b29be51490518846a878 265 PRINTS PR00599 Methionine aminopeptidase-1 signature 94 110 1.1E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMF_164 56d2919aed7fe60e09d5200947550383 882 SUPERFAMILY SSF55186 564 717 1.02E-45 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMF_164 56d2919aed7fe60e09d5200947550383 882 SUPERFAMILY SSF50447 458 564 5.3E-15 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMF_164 56d2919aed7fe60e09d5200947550383 882 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 880 152.446 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 AMF_164 56d2919aed7fe60e09d5200947550383 882 SUPERFAMILY SSF101353 249 451 1.44E-49 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 AMF_164 56d2919aed7fe60e09d5200947550383 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 78 89 4.9E-29 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMF_164 56d2919aed7fe60e09d5200947550383 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 274 290 4.9E-29 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMF_164 56d2919aed7fe60e09d5200947550383 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 202 213 4.9E-29 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMF_164 56d2919aed7fe60e09d5200947550383 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 229 242 4.9E-29 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMF_164 56d2919aed7fe60e09d5200947550383 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 298 311 4.9E-29 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMF_164 56d2919aed7fe60e09d5200947550383 882 Gene3D G3DSA:3.10.310.40 777 877 1.9E-6 T 13-10-2018 AMF_164 56d2919aed7fe60e09d5200947550383 882 Gene3D G3DSA:3.30.930.10 4 245 5.3E-104 T 13-10-2018 AMF_164 56d2919aed7fe60e09d5200947550383 882 Gene3D G3DSA:3.30.54.20 636 689 1.0E-43 T 13-10-2018 AMF_164 56d2919aed7fe60e09d5200947550383 882 SMART SM00863 666 708 2.5E-22 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMF_164 56d2919aed7fe60e09d5200947550383 882 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 9 856 3.7E-248 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMF_164 56d2919aed7fe60e09d5200947550383 882 Gene3D G3DSA:3.30.980.10 575 709 1.0E-43 T 13-10-2018 AMF_164 56d2919aed7fe60e09d5200947550383 882 SUPERFAMILY SSF55681 6 248 5.72E-101 T 13-10-2018 AMF_164 56d2919aed7fe60e09d5200947550383 882 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 666 708 1.3E-19 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMF_164 56d2919aed7fe60e09d5200947550383 882 Pfam PF01411 tRNA synthetases class II (A) 9 567 6.1E-196 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AMF_164 56d2919aed7fe60e09d5200947550383 882 Gene3D G3DSA:2.40.30.130 465 564 7.8E-7 T 13-10-2018 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 599 632 3.8E-11 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 Pfam PF13368 Topoisomerase C-terminal repeat 654 702 5.4E-6 T 13-10-2018 IPR025589 Topoisomerase C-terminal repeat AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 Pfam PF13368 Topoisomerase C-terminal repeat 709 760 1.1E-11 T 13-10-2018 IPR025589 Topoisomerase C-terminal repeat AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 Pfam PF13368 Topoisomerase C-terminal repeat 768 813 6.7E-11 T 13-10-2018 IPR025589 Topoisomerase C-terminal repeat AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 288 310 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 Gene3D G3DSA:3.40.50.140 1 139 5.3E-47 T 13-10-2018 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 SMART SM00436 109 197 4.0E-45 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 SUPERFAMILY SSF57783 596 635 2.04E-6 T 13-10-2018 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 Gene3D G3DSA:2.70.20.10 189 464 1.2E-165 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 Pfam PF01131 DNA topoisomerase 133 554 3.9E-129 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 SMART SM00437 251 517 1.4E-116 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 Hamap MF_00952 DNA topoisomerase 1 [topA]. 2 729 53.358 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 633 8.7E-244 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 Gene3D G3DSA:1.10.290.10 259 394 1.2E-165 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 379 395 3.8E-35 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 3.8E-35 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 301 310 3.8E-35 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 167 185 3.8E-35 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 480 494 3.8E-35 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 SMART SM00493 2 103 1.3E-25 T 13-10-2018 IPR006171 TOPRIM domain AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 Gene3D G3DSA:1.10.460.10 140 557 1.2E-165 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 Pfam PF01751 Toprim domain 4 118 6.8E-25 T 13-10-2018 IPR006171 TOPRIM domain AMF_373 cd46e3807e7e71c964c497dee2e7c5a1 813 SUPERFAMILY SSF56712 2 608 2.35E-188 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 104 1.3E-31 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 SMART SM00846 2 153 1.0E-65 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 3 325 8.6E-111 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 PIRSF PIRSF000149 1 334 2.2E-126 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 SUPERFAMILY SSF55347 153 314 3.43E-56 T 13-10-2018 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 Gene3D G3DSA:3.30.360.10 152 315 1.8E-122 T 13-10-2018 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 313 1.9E-48 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 7.0E-26 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 7.0E-26 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 111 124 7.0E-26 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 7.0E-26 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 7.0E-26 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 Gene3D G3DSA:3.40.50.720 3 325 1.8E-122 T 13-10-2018 AMF_968 c1eddfdec8d2fc43c99c93f74e7c6073 334 SUPERFAMILY SSF51735 3 169 3.16E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_815 d10d8591196a3359c38b8f1e5cf060a8 473 Pfam PF00675 Insulinase (Peptidase family M16) 78 208 7.7E-24 T 13-10-2018 IPR011765 Peptidase M16, N-terminal AMF_815 d10d8591196a3359c38b8f1e5cf060a8 473 Gene3D G3DSA:3.30.830.10 55 272 5.0E-67 T 13-10-2018 AMF_815 d10d8591196a3359c38b8f1e5cf060a8 473 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 89 112 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMF_815 d10d8591196a3359c38b8f1e5cf060a8 473 Pfam PF05193 Peptidase M16 inactive domain 222 403 7.6E-20 T 13-10-2018 IPR007863 Peptidase M16, C-terminal AMF_815 d10d8591196a3359c38b8f1e5cf060a8 473 SUPERFAMILY SSF63411 56 259 8.0E-55 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_815 d10d8591196a3359c38b8f1e5cf060a8 473 SUPERFAMILY SSF63411 296 463 2.5E-17 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_815 d10d8591196a3359c38b8f1e5cf060a8 473 Gene3D G3DSA:3.30.830.10 278 471 9.5E-23 T 13-10-2018 AMF_687 c8707c0b4c10d04e284ef267d776ec2b 77 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 4 77 18.487 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_687 c8707c0b4c10d04e284ef267d776ec2b 77 PRINTS PR00973 Ribosomal protein S17 family signature 55 65 1.7E-6 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_687 c8707c0b4c10d04e284ef267d776ec2b 77 PRINTS PR00973 Ribosomal protein S17 family signature 23 46 1.7E-6 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_687 c8707c0b4c10d04e284ef267d776ec2b 77 PRINTS PR00973 Ribosomal protein S17 family signature 65 72 1.7E-6 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_687 c8707c0b4c10d04e284ef267d776ec2b 77 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 2 75 2.0E-27 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_687 c8707c0b4c10d04e284ef267d776ec2b 77 SUPERFAMILY SSF50249 6 76 2.27E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_687 c8707c0b4c10d04e284ef267d776ec2b 77 Pfam PF00366 Ribosomal protein S17 9 75 8.6E-22 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_687 c8707c0b4c10d04e284ef267d776ec2b 77 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 75 6.0E-27 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_687 c8707c0b4c10d04e284ef267d776ec2b 77 Gene3D G3DSA:2.40.50.140 2 77 1.9E-22 T 13-10-2018 AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 Gene3D G3DSA:1.10.150.570 576 628 8.9E-21 T 13-10-2018 AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 Pfam PF13932 GidA associated domain 412 622 1.7E-71 T 13-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 11 631 39.136 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 283 297 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 378 401 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 161 170 3.8E-5 T 13-10-2018 AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 14 36 3.8E-5 T 13-10-2018 AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 Pfam PF01134 Glucose inhibited division protein A 15 407 2.3E-152 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 13 627 2.0E-235 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 Gene3D G3DSA:3.50.50.60 6 231 9.3E-83 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 Gene3D G3DSA:3.50.50.60 304 469 2.6E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 SUPERFAMILY SSF51905 12 270 7.6E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_737 15cac0d961a2f6b3a23c5255ef73719a 637 SMART SM01228 553 624 5.7E-34 T 13-10-2018 AMF_867 1d21c1c3c24ecbf07a4fc2dad45c9213 171 SMART SM00271 118 168 0.0082 T 13-10-2018 IPR001623 DnaJ domain AMF_867 1d21c1c3c24ecbf07a4fc2dad45c9213 171 SUPERFAMILY SSF46565 114 169 2.09E-14 T 13-10-2018 IPR036869 Chaperone J-domain superfamily AMF_867 1d21c1c3c24ecbf07a4fc2dad45c9213 171 Gene3D G3DSA:1.10.287.110 108 170 3.3E-18 T 13-10-2018 IPR036869 Chaperone J-domain superfamily AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 Pfam PF07498 Rho termination factor, N-terminal domain 38 76 5.8E-7 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 SUPERFAMILY SSF50249 84 155 2.46E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 SMART SM00959 38 80 1.7E-9 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 SMART SM00382 206 386 1.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 SUPERFAMILY SSF52540 124 407 4.34E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 Gene3D G3DSA:1.10.720.10 33 79 1.2E-8 T 13-10-2018 AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 Gene3D G3DSA:2.40.50.140 80 156 1.1E-27 T 13-10-2018 AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 Pfam PF07497 Rho termination factor, RNA-binding domain 86 156 2.1E-25 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 SUPERFAMILY SSF68912 34 79 1.22E-7 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 Hamap MF_01884 Transcription termination factor Rho [rho]. 34 454 204.696 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 TIGRFAM TIGR00767 rho: transcription termination factor Rho 36 453 5.6E-193 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 Gene3D G3DSA:3.40.50.300 163 453 1.5E-123 T 13-10-2018 AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 195 399 1.6E-27 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_045 f6d53936f4cce87818dc7f1fd4b5c77a 454 SMART SM00357 85 151 4.7E-12 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 AMF_193 a40830d6342dc1af691107bcb4056d7e 134 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 66 107 4.0E-13 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_193 a40830d6342dc1af691107bcb4056d7e 134 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 3 134 16.738 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_193 a40830d6342dc1af691107bcb4056d7e 134 SUPERFAMILY SSF48300 5 65 7.98E-7 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_193 a40830d6342dc1af691107bcb4056d7e 134 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 64 134 3.5E-21 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_193 a40830d6342dc1af691107bcb4056d7e 134 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 134 1.7E-26 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_193 a40830d6342dc1af691107bcb4056d7e 134 Gene3D G3DSA:3.30.1390.10 63 134 8.4E-21 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMF_193 a40830d6342dc1af691107bcb4056d7e 134 SUPERFAMILY SSF54736 64 134 9.94E-17 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMF_087 bd8b73d6d7e10b09eef919ea6474ce3d 205 SUPERFAMILY SSF63380 1 92 4.08E-20 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMF_087 bd8b73d6d7e10b09eef919ea6474ce3d 205 PIRSF PIRSF000498 1 205 2.1E-63 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMF_087 bd8b73d6d7e10b09eef919ea6474ce3d 205 SUPERFAMILY SSF63380 95 198 2.13E-31 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMF_087 bd8b73d6d7e10b09eef919ea6474ce3d 205 Gene3D G3DSA:2.40.30.20 1 89 2.0E-21 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_087 bd8b73d6d7e10b09eef919ea6474ce3d 205 Gene3D G3DSA:2.40.30.20 103 205 1.6E-29 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_087 bd8b73d6d7e10b09eef919ea6474ce3d 205 Pfam PF00677 Lumazine binding domain 101 185 3.5E-22 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMF_087 bd8b73d6d7e10b09eef919ea6474ce3d 205 Pfam PF00677 Lumazine binding domain 3 86 2.0E-18 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMF_087 bd8b73d6d7e10b09eef919ea6474ce3d 205 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 200 4.9E-55 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMF_689 589db1d2e12d4ec1e03bd18bd0a74397 142 Pfam PF00252 Ribosomal protein L16p/L10e 9 135 4.1E-45 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AMF_689 589db1d2e12d4ec1e03bd18bd0a74397 142 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 8 132 3.2E-51 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_689 589db1d2e12d4ec1e03bd18bd0a74397 142 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 6 139 33.624 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_689 589db1d2e12d4ec1e03bd18bd0a74397 142 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 87 98 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_689 589db1d2e12d4ec1e03bd18bd0a74397 142 PRINTS PR00060 Ribosomal protein L16 signature 29 41 2.3E-33 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_689 589db1d2e12d4ec1e03bd18bd0a74397 142 PRINTS PR00060 Ribosomal protein L16 signature 63 92 2.3E-33 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_689 589db1d2e12d4ec1e03bd18bd0a74397 142 PRINTS PR00060 Ribosomal protein L16 signature 47 58 2.3E-33 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_689 589db1d2e12d4ec1e03bd18bd0a74397 142 PRINTS PR00060 Ribosomal protein L16 signature 93 122 2.3E-33 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_689 589db1d2e12d4ec1e03bd18bd0a74397 142 Gene3D G3DSA:3.90.1170.10 6 141 8.1E-54 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AMF_689 589db1d2e12d4ec1e03bd18bd0a74397 142 SUPERFAMILY SSF54686 7 138 1.44E-50 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AMF_335 cd7ad0171ba56b2bc4eebeab2d4bbf14 956 ProSitePatterns PS00211 ABC transporters family signature. 499 513 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_335 cd7ad0171ba56b2bc4eebeab2d4bbf14 956 Gene3D G3DSA:3.40.50.300 8 606 4.8E-211 T 13-10-2018 AMF_335 cd7ad0171ba56b2bc4eebeab2d4bbf14 956 ProSitePatterns PS00211 ABC transporters family signature. 840 854 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_335 cd7ad0171ba56b2bc4eebeab2d4bbf14 956 Gene3D G3DSA:1.20.1580.10 92 504 4.8E-211 T 13-10-2018 AMF_335 cd7ad0171ba56b2bc4eebeab2d4bbf14 956 Gene3D G3DSA:1.10.8.280 298 413 4.8E-211 T 13-10-2018 AMF_335 cd7ad0171ba56b2bc4eebeab2d4bbf14 956 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 934 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 AMF_335 cd7ad0171ba56b2bc4eebeab2d4bbf14 956 SUPERFAMILY SSF52540 624 923 1.07E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_335 cd7ad0171ba56b2bc4eebeab2d4bbf14 956 Gene3D G3DSA:3.30.190.20 132 248 4.8E-211 T 13-10-2018 AMF_335 cd7ad0171ba56b2bc4eebeab2d4bbf14 956 SUPERFAMILY SSF52540 6 581 8.01E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_335 cd7ad0171ba56b2bc4eebeab2d4bbf14 956 Gene3D G3DSA:1.20.1580.10 703 840 1.0E-130 T 13-10-2018 AMF_335 cd7ad0171ba56b2bc4eebeab2d4bbf14 956 Gene3D G3DSA:3.40.50.300 623 947 1.0E-130 T 13-10-2018 AMF_1005 819e75db6280e718529403048f8f5810 398 PRINTS PR00477 Phosphoglycerate kinase family signature 323 348 4.2E-61 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 PRINTS PR00477 Phosphoglycerate kinase family signature 204 223 4.2E-61 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 PRINTS PR00477 Phosphoglycerate kinase family signature 27 43 4.2E-61 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 PRINTS PR00477 Phosphoglycerate kinase family signature 153 175 4.2E-61 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 PRINTS PR00477 Phosphoglycerate kinase family signature 48 70 4.2E-61 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 PRINTS PR00477 Phosphoglycerate kinase family signature 384 398 4.2E-61 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 PRINTS PR00477 Phosphoglycerate kinase family signature 125 140 4.2E-61 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 PRINTS PR00477 Phosphoglycerate kinase family signature 360 371 4.2E-61 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 Gene3D G3DSA:3.40.50.1260 27 184 1.5E-125 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 32 42 - T 13-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 Pfam PF00162 Phosphoglycerate kinase 24 396 5.2E-126 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 PIRSF PIRSF000724 15 398 8.8E-131 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 SUPERFAMILY SSF53748 22 396 5.89E-119 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 19 398 30.59 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_1005 819e75db6280e718529403048f8f5810 398 Gene3D G3DSA:3.40.50.1260 185 396 1.5E-125 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_772 6131a053f60bacbb4ee98ec2f70c32c2 608 SUPERFAMILY SSF56235 6 237 3.0E-59 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_772 6131a053f60bacbb4ee98ec2f70c32c2 608 Gene3D G3DSA:3.40.50.10490 447 593 4.8E-116 T 13-10-2018 AMF_772 6131a053f60bacbb4ee98ec2f70c32c2 608 Pfam PF01380 SIS domain 462 589 2.0E-20 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMF_772 6131a053f60bacbb4ee98ec2f70c32c2 608 Pfam PF01380 SIS domain 295 413 1.6E-27 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMF_772 6131a053f60bacbb4ee98ec2f70c32c2 608 Pfam PF13522 Glutamine amidotransferase domain 65 172 2.4E-18 T 13-10-2018 AMF_772 6131a053f60bacbb4ee98ec2f70c32c2 608 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 6 608 1.4E-199 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AMF_772 6131a053f60bacbb4ee98ec2f70c32c2 608 Gene3D G3DSA:3.60.20.10 6 242 7.8E-64 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_772 6131a053f60bacbb4ee98ec2f70c32c2 608 SUPERFAMILY SSF53697 249 608 1.02E-91 T 13-10-2018 AMF_772 6131a053f60bacbb4ee98ec2f70c32c2 608 Gene3D G3DSA:3.40.50.10490 253 607 4.8E-116 T 13-10-2018 AMF_751 42e024b9604a1c803688fe1f1b567904 351 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 8 351 41.863 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMF_751 42e024b9604a1c803688fe1f1b567904 351 Pfam PF00586 AIR synthase related protein, N-terminal domain 66 170 8.9E-16 T 13-10-2018 IPR016188 PurM-like, N-terminal domain AMF_751 42e024b9604a1c803688fe1f1b567904 351 SUPERFAMILY SSF55326 7 175 5.68E-45 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMF_751 42e024b9604a1c803688fe1f1b567904 351 Pfam PF02769 AIR synthase related protein, C-terminal domain 184 349 2.6E-32 T 13-10-2018 IPR010918 PurM-like, C-terminal domain AMF_751 42e024b9604a1c803688fe1f1b567904 351 Gene3D G3DSA:3.30.1330.10 7 176 1.6E-60 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMF_751 42e024b9604a1c803688fe1f1b567904 351 Gene3D G3DSA:3.90.650.10 177 350 9.5E-68 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMF_751 42e024b9604a1c803688fe1f1b567904 351 SUPERFAMILY SSF56042 180 349 6.43E-57 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMF_751 42e024b9604a1c803688fe1f1b567904 351 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 9 342 4.2E-121 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMF_839 a3ef130509d2559525d45905b6259d04 267 Hamap MF_01393 ATP synthase subunit a [atpB]. 31 267 14.958 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_839 a3ef130509d2559525d45905b6259d04 267 Gene3D G3DSA:1.20.120.220 104 267 7.5E-35 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_839 a3ef130509d2559525d45905b6259d04 267 Pfam PF00119 ATP synthase A chain 57 261 2.5E-53 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_839 a3ef130509d2559525d45905b6259d04 267 SUPERFAMILY SSF81336 105 261 1.7E-43 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_839 a3ef130509d2559525d45905b6259d04 267 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 30 263 2.3E-63 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_839 a3ef130509d2559525d45905b6259d04 267 PRINTS PR00123 ATP synthase A subunit signature 193 215 6.4E-29 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_839 a3ef130509d2559525d45905b6259d04 267 PRINTS PR00123 ATP synthase A subunit signature 173 188 6.4E-29 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_839 a3ef130509d2559525d45905b6259d04 267 PRINTS PR00123 ATP synthase A subunit signature 247 262 6.4E-29 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_839 a3ef130509d2559525d45905b6259d04 267 PRINTS PR00123 ATP synthase A subunit signature 112 128 6.4E-29 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_839 a3ef130509d2559525d45905b6259d04 267 ProSitePatterns PS00449 ATP synthase a subunit signature. 196 205 - T 13-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_522 8fd10ce7e8f13b2a1801c5a174037cf9 455 Gene3D G3DSA:3.40.1190.10 31 310 8.7E-83 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMF_522 8fd10ce7e8f13b2a1801c5a174037cf9 455 SUPERFAMILY SSF53244 312 451 1.83E-21 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMF_522 8fd10ce7e8f13b2a1801c5a174037cf9 455 TIGRFAM TIGR01499 folC: bifunctional protein FolC 44 451 2.3E-110 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AMF_522 8fd10ce7e8f13b2a1801c5a174037cf9 455 PIRSF PIRSF001563 34 453 5.1E-107 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AMF_522 8fd10ce7e8f13b2a1801c5a174037cf9 455 SUPERFAMILY SSF53623 38 309 4.69E-83 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMF_522 8fd10ce7e8f13b2a1801c5a174037cf9 455 Pfam PF08245 Mur ligase middle domain 67 284 2.4E-12 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMF_522 8fd10ce7e8f13b2a1801c5a174037cf9 455 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 157 172 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 AMF_522 8fd10ce7e8f13b2a1801c5a174037cf9 455 Gene3D G3DSA:3.90.190.20 322 451 2.1E-21 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMF_010 577f8da29fcc68f98aa929235e5bf436 482 Gene3D G3DSA:3.40.50.720 20 104 6.8E-27 T 13-10-2018 AMF_010 577f8da29fcc68f98aa929235e5bf436 482 Pfam PF08245 Mur ligase middle domain 123 301 7.6E-23 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMF_010 577f8da29fcc68f98aa929235e5bf436 482 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 18 469 34.304 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_010 577f8da29fcc68f98aa929235e5bf436 482 SUPERFAMILY SSF53244 320 463 6.87E-43 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMF_010 577f8da29fcc68f98aa929235e5bf436 482 Pfam PF02875 Mur ligase family, glutamate ligase domain 321 404 1.5E-18 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMF_010 577f8da29fcc68f98aa929235e5bf436 482 Pfam PF01225 Mur ligase family, catalytic domain 21 115 2.3E-18 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMF_010 577f8da29fcc68f98aa929235e5bf436 482 Gene3D G3DSA:3.40.1190.10 107 318 7.1E-57 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMF_010 577f8da29fcc68f98aa929235e5bf436 482 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 21 463 1.7E-128 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_010 577f8da29fcc68f98aa929235e5bf436 482 SUPERFAMILY SSF53623 105 318 1.49E-52 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMF_010 577f8da29fcc68f98aa929235e5bf436 482 Gene3D G3DSA:3.90.190.20 319 475 5.7E-46 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMF_010 577f8da29fcc68f98aa929235e5bf436 482 SUPERFAMILY SSF51984 21 101 7.72E-25 T 13-10-2018 AMF_440 0006f73bd6d2088893c65257f3fdad3f 231 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 28 154 22.984 T 13-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 AMF_440 0006f73bd6d2088893c65257f3fdad3f 231 SUPERFAMILY SSF50685 59 151 3.0E-9 T 13-10-2018 IPR036908 RlpA-like domain superfamily AMF_440 0006f73bd6d2088893c65257f3fdad3f 231 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 64 158 1.2E-40 T 13-10-2018 IPR012997 Rare lipoprotein A AMF_440 0006f73bd6d2088893c65257f3fdad3f 231 Gene3D G3DSA:2.40.40.10 62 154 1.5E-34 T 13-10-2018 IPR036908 RlpA-like domain superfamily AMF_440 0006f73bd6d2088893c65257f3fdad3f 231 Pfam PF03330 Lytic transglycolase 64 151 1.1E-22 T 13-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMF_344 7fba96700a87567a0cd29b89ac34b5c3 372 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 196 360 2.0E-34 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AMF_344 7fba96700a87567a0cd29b89ac34b5c3 372 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 20 370 25.848 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMF_344 7fba96700a87567a0cd29b89ac34b5c3 372 SUPERFAMILY SSF53756 18 368 3.88E-81 T 13-10-2018 AMF_344 7fba96700a87567a0cd29b89ac34b5c3 372 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 20 155 6.9E-21 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMF_344 7fba96700a87567a0cd29b89ac34b5c3 372 Gene3D G3DSA:3.40.50.2000 21 360 5.0E-79 T 13-10-2018 AMF_344 7fba96700a87567a0cd29b89ac34b5c3 372 Gene3D G3DSA:3.40.50.2000 179 354 5.0E-79 T 13-10-2018 AMF_695 59a73c5144f22f2dd8428d895ce702bc 208 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 202 2.8E-66 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_695 59a73c5144f22f2dd8428d895ce702bc 208 Gene3D G3DSA:3.40.1370.10 1 207 1.6E-65 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AMF_695 59a73c5144f22f2dd8428d895ce702bc 208 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 30.434 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_695 59a73c5144f22f2dd8428d895ce702bc 208 SUPERFAMILY SSF52166 1 205 4.58E-68 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AMF_695 59a73c5144f22f2dd8428d895ce702bc 208 Pfam PF00573 Ribosomal protein L4/L1 family 16 203 3.1E-60 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 AMF_669 6f0d2df8380e2142945bdc0c75b8f94c 748 Pfam PF03772 Competence protein 254 526 7.0E-54 T 13-10-2018 IPR004477 ComEC/Rec2-related protein AMF_669 6f0d2df8380e2142945bdc0c75b8f94c 748 Pfam PF13567 Domain of unknown function (DUF4131) 61 210 4.6E-8 T 13-10-2018 IPR025405 Domain of unknown function DUF4131 AMF_669 6f0d2df8380e2142945bdc0c75b8f94c 748 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 276 459 1.9E-26 T 13-10-2018 IPR004477 ComEC/Rec2-related protein AMF_654 6e970c265dfb801bf235e99993fb4078 420 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 12 394 3.8E-121 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMF_654 6e970c265dfb801bf235e99993fb4078 420 Pfam PF01702 Queuine tRNA-ribosyltransferase 151 392 2.9E-77 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMF_654 6e970c265dfb801bf235e99993fb4078 420 Gene3D G3DSA:3.20.20.105 2 399 9.4E-146 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMF_654 6e970c265dfb801bf235e99993fb4078 420 SUPERFAMILY SSF51713 9 397 6.93E-128 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMF_654 6e970c265dfb801bf235e99993fb4078 420 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 11 390 2.7E-119 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMF_654 6e970c265dfb801bf235e99993fb4078 420 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 9 397 45.321 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMF_488 1043f6c5dfad0163aebb56dfea71e93a 140 Gene3D G3DSA:3.90.1010.10 8 139 1.1E-53 T 13-10-2018 AMF_488 1043f6c5dfad0163aebb56dfea71e93a 140 SUPERFAMILY SSF82649 9 133 1.1E-45 T 13-10-2018 AMF_488 1043f6c5dfad0163aebb56dfea71e93a 140 Pfam PF01592 NifU-like N terminal domain 10 133 9.9E-50 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AMF_488 1043f6c5dfad0163aebb56dfea71e93a 140 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 10 133 1.5E-63 T 13-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AMF_516 ba31eb29001298080166e832d51d1519 260 Gene3D G3DSA:3.40.1280.10 98 259 5.4E-38 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMF_516 ba31eb29001298080166e832d51d1519 260 Pfam PF04452 RNA methyltransferase 43 254 3.4E-49 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMF_516 ba31eb29001298080166e832d51d1519 260 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 29 256 1.1E-37 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMF_516 ba31eb29001298080166e832d51d1519 260 PIRSF PIRSF015601 28 259 5.5E-54 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMF_516 ba31eb29001298080166e832d51d1519 260 Gene3D G3DSA:2.40.240.20 28 95 5.9E-16 T 13-10-2018 AMF_516 ba31eb29001298080166e832d51d1519 260 SUPERFAMILY SSF88697 28 94 2.73E-14 T 13-10-2018 IPR015947 PUA-like superfamily AMF_516 ba31eb29001298080166e832d51d1519 260 SUPERFAMILY SSF75217 102 255 4.45E-39 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases AMF_230 b0d6569b79d3683387c09c02b44f142b 215 PRINTS PR00127 Clp protease catalytic subunit P signature 107 124 4.4E-50 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_230 b0d6569b79d3683387c09c02b44f142b 215 PRINTS PR00127 Clp protease catalytic subunit P signature 128 147 4.4E-50 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_230 b0d6569b79d3683387c09c02b44f142b 215 PRINTS PR00127 Clp protease catalytic subunit P signature 36 51 4.4E-50 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_230 b0d6569b79d3683387c09c02b44f142b 215 PRINTS PR00127 Clp protease catalytic subunit P signature 76 96 4.4E-50 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_230 b0d6569b79d3683387c09c02b44f142b 215 PRINTS PR00127 Clp protease catalytic subunit P signature 185 204 4.4E-50 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_230 b0d6569b79d3683387c09c02b44f142b 215 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 20 210 42.671 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_230 b0d6569b79d3683387c09c02b44f142b 215 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 107 118 - T 13-10-2018 IPR018215 ClpP, Ser active site AMF_230 b0d6569b79d3683387c09c02b44f142b 215 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 18 209 1.7E-99 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_230 b0d6569b79d3683387c09c02b44f142b 215 Gene3D G3DSA:3.90.226.10 12 211 1.2E-83 T 13-10-2018 AMF_230 b0d6569b79d3683387c09c02b44f142b 215 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 129 142 - T 13-10-2018 IPR033135 ClpP, histidine active site AMF_230 b0d6569b79d3683387c09c02b44f142b 215 Pfam PF00574 Clp protease 29 209 2.8E-86 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMF_230 b0d6569b79d3683387c09c02b44f142b 215 SUPERFAMILY SSF52096 27 210 1.39E-72 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMF_168 194162bbfb27c6e9db9dc3a5a4dba9ef 399 Pfam PF08442 ATP-grasp domain 13 213 4.3E-68 T 13-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMF_168 194162bbfb27c6e9db9dc3a5a4dba9ef 399 Pfam PF00549 CoA-ligase 273 389 4.7E-19 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMF_168 194162bbfb27c6e9db9dc3a5a4dba9ef 399 Gene3D G3DSA:3.30.1490.20 32 115 7.6E-82 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMF_168 194162bbfb27c6e9db9dc3a5a4dba9ef 399 SUPERFAMILY SSF56059 13 247 8.94E-69 T 13-10-2018 AMF_168 194162bbfb27c6e9db9dc3a5a4dba9ef 399 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 12 396 40.819 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMF_168 194162bbfb27c6e9db9dc3a5a4dba9ef 399 Gene3D G3DSA:3.40.50.261 251 397 2.3E-53 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMF_168 194162bbfb27c6e9db9dc3a5a4dba9ef 399 PIRSF PIRSF001554 12 398 1.7E-138 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMF_168 194162bbfb27c6e9db9dc3a5a4dba9ef 399 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 13 395 1.4E-147 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMF_168 194162bbfb27c6e9db9dc3a5a4dba9ef 399 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 268 293 - T 13-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMF_168 194162bbfb27c6e9db9dc3a5a4dba9ef 399 Gene3D G3DSA:3.30.470.20 13 245 7.6E-82 T 13-10-2018 AMF_168 194162bbfb27c6e9db9dc3a5a4dba9ef 399 SUPERFAMILY SSF52210 253 396 2.35E-50 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMF_716 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:1.10.1030.10 405 548 6.9E-40 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1058 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.30.470.20 119 403 1.3E-111 T 13-10-2018 AMF_716 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF52440 559 682 4.89E-41 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMF_716 22532d13c96acc85a5f7842167464724 1101 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 845 852 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_716 22532d13c96acc85a5f7842167464724 1101 Pfam PF02142 MGS-like domain 963 1046 9.8E-17 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain AMF_716 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.40.50.1380 942 1080 4.8E-37 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMF_716 22532d13c96acc85a5f7842167464724 1101 SMART SM01096 422 544 1.0E-59 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF52440 1 127 1.58E-45 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMF_716 22532d13c96acc85a5f7842167464724 1101 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 335 1.6E-64 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_716 22532d13c96acc85a5f7842167464724 1101 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 680 879 6.1E-29 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_716 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.40.50.20 1 116 6.3E-45 T 13-10-2018 AMF_716 22532d13c96acc85a5f7842167464724 1101 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1068 12.343 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF52335 941 1078 1.27E-37 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMF_716 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF48108 396 546 2.35E-44 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.4E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.4E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 1.4E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 1.4E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 298 327 1.4E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 1.4E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 1.4E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 425 544 1.2E-37 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_716 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.30.470.20 673 941 8.7E-104 T 13-10-2018 AMF_716 22532d13c96acc85a5f7842167464724 1101 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 298 305 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_716 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF56059 128 401 6.19E-97 T 13-10-2018 AMF_716 22532d13c96acc85a5f7842167464724 1101 SMART SM00851 961 1047 2.0E-29 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain AMF_716 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF56059 680 939 1.54E-93 T 13-10-2018 AMF_716 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.40.50.20 557 669 1.8E-41 T 13-10-2018 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF00575 S1 RNA binding domain 623 693 1.4E-16 T 13-10-2018 IPR003029 S1 domain GO:0003676 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF54211 2 143 8.6E-44 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_391 a03f82163e94cc8617ad669d96a8e566 805 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 695 3.6E-289 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF54211 306 473 4.71E-45 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_391 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 285 324 2.0E-4 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF55666 455 553 1.31E-25 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 PIRSF PIRSF005499 1 723 1.0E-266 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 Gene3D G3DSA:2.40.50.140 627 698 6.9E-23 T 13-10-2018 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 Gene3D G3DSA:3.30.1370.10 555 626 2.6E-19 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF50249 625 702 2.5E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_391 a03f82163e94cc8617ad669d96a8e566 805 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 697 28.401 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF03725 3' exoribonuclease family, domain 2 147 211 2.8E-11 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF54791 560 644 2.77E-20 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF00013 KH domain 562 618 1.7E-12 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 Gene3D G3DSA:3.30.230.70 1 230 3.7E-72 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 SMART SM00322 557 622 1.3E-13 T 13-10-2018 IPR004087 K Homology domain GO:0003676 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 SMART SM00316 625 694 4.0E-17 T 13-10-2018 IPR022967 RNA-binding domain, S1 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 Gene3D G3DSA:3.30.230.70 233 554 2.6E-104 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF01138 3' exoribonuclease family, domain 1 328 461 1.8E-21 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF01138 3' exoribonuclease family, domain 1 14 143 7.5E-18 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMF_391 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF55666 137 229 9.82E-23 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMF_697 a62edf8b5b2e64313ae3c77f091aa148 105 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 3.1E-35 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_697 a62edf8b5b2e64313ae3c77f091aa148 105 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 2.1E-9 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_697 a62edf8b5b2e64313ae3c77f091aa148 105 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 2.1E-9 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_697 a62edf8b5b2e64313ae3c77f091aa148 105 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 2.1E-9 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_697 a62edf8b5b2e64313ae3c77f091aa148 105 SMART SM01403 7 101 3.2E-41 T 13-10-2018 IPR027486 Ribosomal protein S10 domain AMF_697 a62edf8b5b2e64313ae3c77f091aa148 105 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 22.545 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_697 a62edf8b5b2e64313ae3c77f091aa148 105 Pfam PF00338 Ribosomal protein S10p/S20e 8 101 2.4E-28 T 13-10-2018 IPR027486 Ribosomal protein S10 domain AMF_697 a62edf8b5b2e64313ae3c77f091aa148 105 Gene3D G3DSA:3.30.70.600 1 103 1.3E-30 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AMF_697 a62edf8b5b2e64313ae3c77f091aa148 105 SUPERFAMILY SSF54999 5 102 3.01E-31 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AMF_650 3e69f115504ea1b96988668a3a78dd52 154 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 54 91 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMF_650 3e69f115504ea1b96988668a3a78dd52 154 Gene3D G3DSA:3.40.140.10 2 154 1.0E-45 T 13-10-2018 AMF_650 3e69f115504ea1b96988668a3a78dd52 154 SUPERFAMILY SSF53927 8 147 7.86E-42 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMF_650 3e69f115504ea1b96988668a3a78dd52 154 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 7 102 2.7E-23 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AMF_650 3e69f115504ea1b96988668a3a78dd52 154 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 10 148 39.091 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AMF_306 3342bcd1d5081f8e1f7d40bdd5651080 346 SUPERFAMILY SSF51569 15 344 1.61E-123 T 13-10-2018 AMF_306 3342bcd1d5081f8e1f7d40bdd5651080 346 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 140 154 1.5E-47 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMF_306 3342bcd1d5081f8e1f7d40bdd5651080 346 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 170 189 1.5E-47 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMF_306 3342bcd1d5081f8e1f7d40bdd5651080 346 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 208 227 1.5E-47 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMF_306 3342bcd1d5081f8e1f7d40bdd5651080 346 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 317 336 1.5E-47 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMF_306 3342bcd1d5081f8e1f7d40bdd5651080 346 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 287 302 1.5E-47 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMF_306 3342bcd1d5081f8e1f7d40bdd5651080 346 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 262 278 1.5E-47 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMF_306 3342bcd1d5081f8e1f7d40bdd5651080 346 SMART SM01004 22 343 3.0E-189 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMF_306 3342bcd1d5081f8e1f7d40bdd5651080 346 Pfam PF00490 Delta-aminolevulinic acid dehydratase 25 341 1.3E-122 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMF_306 3342bcd1d5081f8e1f7d40bdd5651080 346 Gene3D G3DSA:3.20.20.70 6 346 4.6E-128 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_306 3342bcd1d5081f8e1f7d40bdd5651080 346 PIRSF PIRSF001415 15 346 8.3E-128 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMF_291 6565ede83f5d66bee10e8b9554f3b976 454 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 149 169 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMF_291 6565ede83f5d66bee10e8b9554f3b976 454 Pfam PF04055 Radical SAM superfamily 149 322 9.6E-33 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMF_291 6565ede83f5d66bee10e8b9554f3b976 454 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 5 440 1.9E-140 T 13-10-2018 AMF_291 6565ede83f5d66bee10e8b9554f3b976 454 Pfam PF00919 Uncharacterized protein family UPF0004 6 101 9.4E-29 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AMF_291 6565ede83f5d66bee10e8b9554f3b976 454 Gene3D G3DSA:3.40.50.12160 4 134 5.2E-31 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AMF_291 6565ede83f5d66bee10e8b9554f3b976 454 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 443 68.678 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 AMF_291 6565ede83f5d66bee10e8b9554f3b976 454 SMART SM00729 145 364 4.0E-53 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMF_291 6565ede83f5d66bee10e8b9554f3b976 454 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 432 2.5E-142 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AMF_291 6565ede83f5d66bee10e8b9554f3b976 454 Gene3D G3DSA:3.80.30.20 144 375 3.6E-83 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMF_291 6565ede83f5d66bee10e8b9554f3b976 454 SUPERFAMILY SSF102114 119 368 1.83E-59 T 13-10-2018 AMF_635 f0514c312fefb5f574c4459290d6c22e 189 Pfam PF13244 Domain of unknown function (DUF4040) 16 79 9.7E-14 T 13-10-2018 IPR025383 Domain of unknown function DUF4040 AMF_978 ffdeae5b85b82314c6a087634e052d44 379 PRINTS PR00625 DnaJ domain signature 7 25 8.0E-31 T 13-10-2018 IPR001623 DnaJ domain AMF_978 ffdeae5b85b82314c6a087634e052d44 379 PRINTS PR00625 DnaJ domain signature 25 40 8.0E-31 T 13-10-2018 IPR001623 DnaJ domain AMF_978 ffdeae5b85b82314c6a087634e052d44 379 PRINTS PR00625 DnaJ domain signature 42 62 8.0E-31 T 13-10-2018 IPR001623 DnaJ domain AMF_978 ffdeae5b85b82314c6a087634e052d44 379 PRINTS PR00625 DnaJ domain signature 62 81 8.0E-31 T 13-10-2018 IPR001623 DnaJ domain AMF_978 ffdeae5b85b82314c6a087634e052d44 379 SUPERFAMILY SSF57938 135 212 2.22E-17 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily AMF_978 ffdeae5b85b82314c6a087634e052d44 379 SUPERFAMILY SSF49493 119 258 1.96E-16 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMF_978 ffdeae5b85b82314c6a087634e052d44 379 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 353 6.1E-127 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMF_978 ffdeae5b85b82314c6a087634e052d44 379 SMART SM00271 4 62 1.5E-32 T 13-10-2018 IPR001623 DnaJ domain AMF_978 ffdeae5b85b82314c6a087634e052d44 379 SUPERFAMILY SSF46565 3 105 1.44E-35 T 13-10-2018 IPR036869 Chaperone J-domain superfamily AMF_978 ffdeae5b85b82314c6a087634e052d44 379 Gene3D G3DSA:1.10.287.110 2 113 7.8E-39 T 13-10-2018 IPR036869 Chaperone J-domain superfamily AMF_978 ffdeae5b85b82314c6a087634e052d44 379 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 372 39.03 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMF_978 ffdeae5b85b82314c6a087634e052d44 379 Gene3D G3DSA:2.60.260.20 255 364 2.4E-30 T 13-10-2018 AMF_978 ffdeae5b85b82314c6a087634e052d44 379 Pfam PF00684 DnaJ central domain 148 208 3.2E-9 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMF_978 ffdeae5b85b82314c6a087634e052d44 379 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 13-10-2018 IPR018253 DnaJ domain, conserved site AMF_978 ffdeae5b85b82314c6a087634e052d44 379 Gene3D G3DSA:2.10.230.10 148 208 7.8E-30 T 13-10-2018 AMF_978 ffdeae5b85b82314c6a087634e052d44 379 SUPERFAMILY SSF49493 259 347 5.23E-23 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMF_978 ffdeae5b85b82314c6a087634e052d44 379 Gene3D G3DSA:2.60.260.20 118 250 7.8E-30 T 13-10-2018 AMF_978 ffdeae5b85b82314c6a087634e052d44 379 Pfam PF00226 DnaJ domain 5 67 4.0E-29 T 13-10-2018 IPR001623 DnaJ domain AMF_978 ffdeae5b85b82314c6a087634e052d44 379 Pfam PF01556 DnaJ C terminal domain 122 336 2.6E-40 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal AMF_383 d8c266a1500e29d5f9034182ec446534 670 SUPERFAMILY SSF109998 75 335 1.69E-18 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMF_383 d8c266a1500e29d5f9034182ec446534 670 Gene3D G3DSA:1.10.4030.30 72 198 2.7E-7 T 13-10-2018 AMF_383 d8c266a1500e29d5f9034182ec446534 670 Gene3D G3DSA:3.10.50.40 299 417 1.1E-9 T 13-10-2018 AMF_383 d8c266a1500e29d5f9034182ec446534 670 Pfam PF13624 SurA N-terminal domain 43 194 1.2E-29 T 13-10-2018 AMF_383 d8c266a1500e29d5f9034182ec446534 670 SUPERFAMILY SSF54534 307 395 2.04E-10 T 13-10-2018 AMF_383 d8c266a1500e29d5f9034182ec446534 670 Pfam PF13145 PPIC-type PPIASE domain 312 403 1.1E-10 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 AMF_015 9f3855d999150949aa921303ec9a1914 560 SUPERFAMILY SSF52540 9 276 4.25E-114 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_015 9f3855d999150949aa921303ec9a1914 560 Hamap MF_01227 CTP synthase [pyrG]. 9 537 45.906 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMF_015 9f3855d999150949aa921303ec9a1914 560 SUPERFAMILY SSF52317 296 538 7.31E-72 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_015 9f3855d999150949aa921303ec9a1914 560 Pfam PF00117 Glutamine amidotransferase class-I 307 531 4.6E-50 T 13-10-2018 IPR017926 Glutamine amidotransferase AMF_015 9f3855d999150949aa921303ec9a1914 560 Pfam PF06418 CTP synthase N-terminus 10 271 1.3E-115 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMF_015 9f3855d999150949aa921303ec9a1914 560 TIGRFAM TIGR00337 PyrG: CTP synthase 9 531 2.3E-214 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMF_015 9f3855d999150949aa921303ec9a1914 560 Gene3D G3DSA:3.40.50.300 7 290 1.0E-120 T 13-10-2018 AMF_015 9f3855d999150949aa921303ec9a1914 560 Gene3D G3DSA:3.40.50.880 291 549 6.7E-91 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_647 d1bbdbc918521c150020da0606c377cd 377 SUPERFAMILY SSF51971 7 338 8.0E-22 T 13-10-2018 AMF_647 d1bbdbc918521c150020da0606c377cd 377 Gene3D G3DSA:3.30.9.10 89 300 8.6E-41 T 13-10-2018 AMF_647 d1bbdbc918521c150020da0606c377cd 377 Gene3D G3DSA:3.50.50.60 7 332 8.6E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_647 d1bbdbc918521c150020da0606c377cd 377 SUPERFAMILY SSF54373 210 299 2.09E-15 T 13-10-2018 AMF_647 d1bbdbc918521c150020da0606c377cd 377 Pfam PF01266 FAD dependent oxidoreductase 7 333 6.6E-30 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 SUPERFAMILY SSF55021 330 406 4.58E-19 T 13-10-2018 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 Pfam PF00696 Amino acid kinase family 4 232 1.7E-39 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 ProSitePatterns PS00324 Aspartokinase signature. 6 14 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 SUPERFAMILY SSF55021 251 326 4.58E-12 T 13-10-2018 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 PIRSF PIRSF000726 59 410 3.2E-99 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 PIRSF PIRSF000726 2 69 1.0E-13 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 Gene3D G3DSA:3.40.1160.10 3 258 1.3E-73 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 PRINTS PR00474 Glutamate 5-kinase family signature 112 133 5.3E-5 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 PRINTS PR00474 Glutamate 5-kinase family signature 207 227 5.3E-5 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 PRINTS PR00474 Glutamate 5-kinase family signature 155 182 5.3E-5 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 PRINTS PR00474 Glutamate 5-kinase family signature 34 48 5.3E-5 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 Gene3D G3DSA:3.30.70.260 259 404 8.4E-42 T 13-10-2018 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 SUPERFAMILY SSF53633 5 244 1.31E-61 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 4 403 1.8E-104 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 Pfam PF13840 ACT domain 338 400 6.9E-10 T 13-10-2018 IPR027795 CASTOR, ACT domain AMF_764 8a8c762a40488e5614a9cb50cbb5258a 412 Gene3D G3DSA:3.30.70.260 264 339 8.4E-42 T 13-10-2018 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:3.30.470.90 73 310 1.8E-80 T 13-10-2018 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SUPERFAMILY SSF52113 593 669 8.5E-17 T 13-10-2018 IPR036420 BRCT domain superfamily AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:2.40.50.140 311 382 5.9E-31 T 13-10-2018 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 12 664 6.6E-206 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:1.10.150.20 424 500 6.6E-21 T 13-10-2018 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SMART SM00532 4 440 2.6E-194 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SUPERFAMILY SSF56091 3 308 1.35E-98 T 13-10-2018 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 119 148 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 314 389 3.3E-33 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SMART SM00292 594 671 2.3E-10 T 13-10-2018 IPR001357 BRCT domain AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:2.20.70.80 385 422 1.2E-10 T 13-10-2018 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:1.10.150.20 502 580 3.8E-11 T 13-10-2018 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 309 3.0E-95 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SUPERFAMILY SSF50249 311 391 2.57E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Hamap MF_01588 DNA ligase [ligA]. 3 668 44.97 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:3.40.50.10190 581 671 1.3E-24 T 13-10-2018 IPR036420 BRCT domain superfamily AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 399 426 2.5E-10 T 13-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SUPERFAMILY SSF47781 395 578 1.78E-43 T 13-10-2018 IPR010994 RuvA domain 2-like AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 598 665 5.0E-10 T 13-10-2018 IPR001357 BRCT domain AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Pfam PF12826 Helix-hairpin-helix motif 507 573 4.9E-8 T 13-10-2018 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 PIRSF PIRSF001604 1 673 2.2E-221 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMF_112 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:1.10.287.610 2 72 4.8E-14 T 13-10-2018 AMF_313 eee87218fb8bb8fc8cfc63efb28575c9 282 PIRSF PIRSF000094 13 271 1.3E-108 T 13-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMF_313 eee87218fb8bb8fc8cfc63efb28575c9 282 SUPERFAMILY SSF51735 17 266 5.46E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_313 eee87218fb8bb8fc8cfc63efb28575c9 282 Gene3D G3DSA:3.40.50.720 12 282 1.7E-59 T 13-10-2018 AMF_313 eee87218fb8bb8fc8cfc63efb28575c9 282 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 25 263 3.4E-86 T 13-10-2018 AMF_313 eee87218fb8bb8fc8cfc63efb28575c9 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 246 1.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_313 eee87218fb8bb8fc8cfc63efb28575c9 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 160 1.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_313 eee87218fb8bb8fc8cfc63efb28575c9 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 189 1.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_313 eee87218fb8bb8fc8cfc63efb28575c9 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 208 1.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_313 eee87218fb8bb8fc8cfc63efb28575c9 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 1.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_006 c91dd9e43c7d4945c065158e34fcfcb2 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 50 69 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMF_006 c91dd9e43c7d4945c065158e34fcfcb2 98 Pfam PF00216 Bacterial DNA-binding protein 5 94 1.3E-22 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMF_006 c91dd9e43c7d4945c065158e34fcfcb2 98 SUPERFAMILY SSF47729 5 95 8.39E-23 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMF_006 c91dd9e43c7d4945c065158e34fcfcb2 98 SMART SM00411 5 94 4.0E-15 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMF_006 c91dd9e43c7d4945c065158e34fcfcb2 98 Gene3D G3DSA:4.10.520.10 3 98 2.8E-22 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMF_190 242702374e03ac5fdbf0192e6dff2269 147 SMART SM00649 10 146 1.4E-51 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMF_190 242702374e03ac5fdbf0192e6dff2269 147 Gene3D G3DSA:1.10.10.250 81 147 2.1E-23 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily AMF_190 242702374e03ac5fdbf0192e6dff2269 147 SUPERFAMILY SSF46906 74 146 1.57E-20 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily AMF_190 242702374e03ac5fdbf0192e6dff2269 147 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 7 146 2.0E-45 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_190 242702374e03ac5fdbf0192e6dff2269 147 SUPERFAMILY SSF54747 7 76 3.79E-17 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AMF_190 242702374e03ac5fdbf0192e6dff2269 147 Pfam PF00298 Ribosomal protein L11, RNA binding domain 80 145 9.9E-21 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_190 242702374e03ac5fdbf0192e6dff2269 147 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 6 147 24.523 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMF_190 242702374e03ac5fdbf0192e6dff2269 147 Pfam PF03946 Ribosomal protein L11, N-terminal domain 10 72 2.5E-18 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal AMF_190 242702374e03ac5fdbf0192e6dff2269 147 Gene3D G3DSA:3.30.1550.10 4 79 1.0E-21 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AMF_552 6b0c6a98f9ea6eab25b0c65dae48060f 108 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 9 108 17.635 T 13-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMF_552 6b0c6a98f9ea6eab25b0c65dae48060f 108 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 14 102 1.1E-19 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 Gene3D G3DSA:1.10.1140.10 372 488 2.2E-56 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 SUPERFAMILY SSF50615 19 92 2.38E-19 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 360 369 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 Gene3D G3DSA:2.40.10.170 18 93 2.9E-23 T 13-10-2018 AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 Hamap MF_01347 ATP synthase subunit beta [atpB]. 17 487 55.2 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 19 487 2.7E-239 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 22 91 7.0E-16 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 SUPERFAMILY SSF47917 372 486 2.38E-51 T 13-10-2018 AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 369 1.1E-61 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 SUPERFAMILY SSF52540 96 373 1.36E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 SMART SM00382 161 354 1.0E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_500 43581661b5ae0e7d0608d92a61f70e03 488 Gene3D G3DSA:3.40.50.300 94 371 1.9E-112 T 13-10-2018 AMF_862 716f0031816cd956a3bd160c60d64486 312 Pfam PF01617 Surface antigen 116 308 6.0E-16 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_862 716f0031816cd956a3bd160c60d64486 312 SUPERFAMILY SSF56925 121 273 8.89E-11 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_231 c5e0861223125892b6d46386131c15b3 405 Gene3D G3DSA:3.30.50.30 2 47 5.3E-19 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily AMF_231 c5e0861223125892b6d46386131c15b3 405 SMART SM00994 8 47 7.8E-21 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMF_231 c5e0861223125892b6d46386131c15b3 405 Pfam PF07724 AAA domain (Cdc48 subfamily) 105 300 4.9E-48 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_231 c5e0861223125892b6d46386131c15b3 405 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 307 376 8.4E-12 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AMF_231 c5e0861223125892b6d46386131c15b3 405 SUPERFAMILY SSF57716 9 44 1.85E-10 T 13-10-2018 AMF_231 c5e0861223125892b6d46386131c15b3 405 SMART SM00382 104 257 2.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_231 c5e0861223125892b6d46386131c15b3 405 Pfam PF06689 ClpX C4-type zinc finger 10 46 6.0E-18 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMF_231 c5e0861223125892b6d46386131c15b3 405 Gene3D G3DSA:1.10.8.60 306 403 9.0E-33 T 13-10-2018 AMF_231 c5e0861223125892b6d46386131c15b3 405 Gene3D G3DSA:3.40.50.300 56 305 9.0E-104 T 13-10-2018 AMF_231 c5e0861223125892b6d46386131c15b3 405 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 404 48.73 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMF_231 c5e0861223125892b6d46386131c15b3 405 SUPERFAMILY SSF52540 57 395 5.94E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_231 c5e0861223125892b6d46386131c15b3 405 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 2 395 1.2E-182 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMF_231 c5e0861223125892b6d46386131c15b3 405 SMART SM01086 307 396 1.1E-27 T 13-10-2018 IPR019489 Clp ATPase, C-terminal AMF_888 0fc2781b5defc4c6864038e79c64ef1e 190 Gene3D G3DSA:1.10.520.20 14 105 2.5E-6 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_888 0fc2781b5defc4c6864038e79c64ef1e 190 Pfam PF00213 ATP synthase delta (OSCP) subunit 14 181 3.2E-35 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_888 0fc2781b5defc4c6864038e79c64ef1e 190 Hamap MF_01416 ATP synthase subunit delta [atpD]. 10 185 15.131 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_888 0fc2781b5defc4c6864038e79c64ef1e 190 PRINTS PR00125 ATP synthase delta subunit signature 143 158 1.2E-9 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_888 0fc2781b5defc4c6864038e79c64ef1e 190 PRINTS PR00125 ATP synthase delta subunit signature 14 33 1.2E-9 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_888 0fc2781b5defc4c6864038e79c64ef1e 190 PRINTS PR00125 ATP synthase delta subunit signature 158 176 1.2E-9 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_888 0fc2781b5defc4c6864038e79c64ef1e 190 PRINTS PR00125 ATP synthase delta subunit signature 93 107 1.2E-9 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_888 0fc2781b5defc4c6864038e79c64ef1e 190 SUPERFAMILY SSF47928 14 113 3.01E-15 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_888 0fc2781b5defc4c6864038e79c64ef1e 190 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 14 181 4.3E-20 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_111 2e9e8814ef6041bcaeee53834f275e22 386 SMART SM00474 4 178 3.9E-20 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMF_111 2e9e8814ef6041bcaeee53834f275e22 386 SUPERFAMILY SSF47819 299 364 1.57E-9 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMF_111 2e9e8814ef6041bcaeee53834f275e22 386 Pfam PF01612 3'-5' exonuclease 11 174 4.8E-32 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMF_111 2e9e8814ef6041bcaeee53834f275e22 386 Gene3D G3DSA:3.30.420.10 2 200 1.5E-52 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMF_111 2e9e8814ef6041bcaeee53834f275e22 386 SUPERFAMILY SSF53098 5 200 5.66E-55 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AMF_382 38a4e9bd99c8cd13592ac3f58f5af471 422 Pfam PF00155 Aminotransferase class I and II 59 414 2.4E-73 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMF_382 38a4e9bd99c8cd13592ac3f58f5af471 422 Gene3D G3DSA:3.90.1150.10 51 413 7.0E-127 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMF_382 38a4e9bd99c8cd13592ac3f58f5af471 422 Gene3D G3DSA:3.40.640.10 90 310 7.0E-127 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMF_382 38a4e9bd99c8cd13592ac3f58f5af471 422 SUPERFAMILY SSF53383 28 418 4.26E-108 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMF_382 38a4e9bd99c8cd13592ac3f58f5af471 422 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 260 273 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMF_917 d04af3c2785627d533fe4786ec4bedef 371 Gene3D G3DSA:1.20.1050.90 125 311 4.6E-65 T 13-10-2018 AMF_917 d04af3c2785627d533fe4786ec4bedef 371 ProSitePatterns PS00618 RecF protein signature 2. 312 330 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AMF_917 d04af3c2785627d533fe4786ec4bedef 371 Gene3D G3DSA:3.40.50.300 12 346 4.6E-65 T 13-10-2018 AMF_917 d04af3c2785627d533fe4786ec4bedef 371 SUPERFAMILY SSF52540 9 361 1.5E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_917 d04af3c2785627d533fe4786ec4bedef 371 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 371 61.406 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMF_917 d04af3c2785627d533fe4786ec4bedef 371 Pfam PF02463 RecF/RecN/SMC N terminal domain 9 356 4.3E-19 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMF_187 61be86ca7bb3771deb75bac6c5389349 70 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 11 61 6.9E-11 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMF_187 61be86ca7bb3771deb75bac6c5389349 70 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 10 63 4.8E-11 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMF_187 61be86ca7bb3771deb75bac6c5389349 70 Gene3D G3DSA:1.20.5.1030 5 63 1.8E-10 T 13-10-2018 IPR038379 SecE superfamily AMF_187 61be86ca7bb3771deb75bac6c5389349 70 Hamap MF_00422 Protein translocase subunit SecE [secE]. 7 62 10.421 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMF_465 c5cb21775a243319b438d2dbd6acf980 398 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 51 62 - T 13-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_465 c5cb21775a243319b438d2dbd6acf980 398 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 128 398 1.1E-125 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_465 c5cb21775a243319b438d2dbd6acf980 398 SUPERFAMILY SSF56762 24 398 4.45E-141 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_465 c5cb21775a243319b438d2dbd6acf980 398 Gene3D G3DSA:1.10.645.20 12 398 3.6E-180 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_465 c5cb21775a243319b438d2dbd6acf980 398 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 4 398 48.795 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_465 c5cb21775a243319b438d2dbd6acf980 398 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 14 398 1.4E-180 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_588 42fbf602f2a9e1417420d4aca2f8e3c5 196 Gene3D G3DSA:3.90.950.10 4 189 1.3E-54 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMF_588 42fbf602f2a9e1417420d4aca2f8e3c5 196 Pfam PF02545 Maf-like protein 7 187 2.7E-48 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 AMF_588 42fbf602f2a9e1417420d4aca2f8e3c5 196 SUPERFAMILY SSF52972 6 187 1.5E-54 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMF_588 42fbf602f2a9e1417420d4aca2f8e3c5 196 TIGRFAM TIGR00172 maf: septum formation protein Maf 7 186 4.6E-40 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 AMF_588 42fbf602f2a9e1417420d4aca2f8e3c5 196 Hamap MF_00528 Septum formation protein Maf [maf]. 6 193 26.571 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 AMF_588 42fbf602f2a9e1417420d4aca2f8e3c5 196 PIRSF PIRSF006305 1 193 3.4E-47 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 AMF_693 529545b387bf20f03d1ab100ca2d8658 277 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 13-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_693 529545b387bf20f03d1ab100ca2d8658 277 Gene3D G3DSA:4.10.950.10 196 276 5.0E-36 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_693 529545b387bf20f03d1ab100ca2d8658 277 PIRSF PIRSF002158 5 276 8.0E-101 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_693 529545b387bf20f03d1ab100ca2d8658 277 SUPERFAMILY SSF50249 3 123 2.81E-42 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_693 529545b387bf20f03d1ab100ca2d8658 277 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 277 44.668 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMF_693 529545b387bf20f03d1ab100ca2d8658 277 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 250 4.3E-54 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_693 529545b387bf20f03d1ab100ca2d8658 277 SMART SM01382 124 252 5.4E-85 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_693 529545b387bf20f03d1ab100ca2d8658 277 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 269 1.3E-115 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMF_693 529545b387bf20f03d1ab100ca2d8658 277 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 1.3E-28 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_693 529545b387bf20f03d1ab100ca2d8658 277 SUPERFAMILY SSF50104 126 270 5.78E-59 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMF_693 529545b387bf20f03d1ab100ca2d8658 277 Gene3D G3DSA:2.30.30.30 115 195 2.3E-27 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMF_693 529545b387bf20f03d1ab100ca2d8658 277 SMART SM01383 42 118 5.4E-43 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_693 529545b387bf20f03d1ab100ca2d8658 277 Gene3D G3DSA:2.40.50.140 1 114 3.9E-41 T 13-10-2018 AMF_020 9146de30187e6564e92fe001da57cd1a 750 Gene3D G3DSA:3.40.50.720 163 441 5.0E-79 T 13-10-2018 AMF_020 9146de30187e6564e92fe001da57cd1a 750 Pfam PF00390 Malic enzyme, N-terminal domain 22 152 3.4E-24 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMF_020 9146de30187e6564e92fe001da57cd1a 750 SUPERFAMILY SSF51735 165 444 3.6E-84 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_020 9146de30187e6564e92fe001da57cd1a 750 SUPERFAMILY SSF53659 432 746 9.05E-74 T 13-10-2018 AMF_020 9146de30187e6564e92fe001da57cd1a 750 PIRSF PIRSF036684 3 749 0.0 T 13-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 AMF_020 9146de30187e6564e92fe001da57cd1a 750 SUPERFAMILY SSF53223 12 163 6.12E-51 T 13-10-2018 AMF_020 9146de30187e6564e92fe001da57cd1a 750 Gene3D G3DSA:3.40.50.10750 572 721 2.9E-81 T 13-10-2018 AMF_020 9146de30187e6564e92fe001da57cd1a 750 Gene3D G3DSA:3.40.50.10950 445 744 2.9E-81 T 13-10-2018 AMF_020 9146de30187e6564e92fe001da57cd1a 750 SMART SM01274 20 153 3.9E-76 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMF_020 9146de30187e6564e92fe001da57cd1a 750 Pfam PF03949 Malic enzyme, NAD binding domain 167 358 5.4E-19 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMF_020 9146de30187e6564e92fe001da57cd1a 750 SMART SM00919 165 402 5.2E-134 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMF_020 9146de30187e6564e92fe001da57cd1a 750 ProSitePatterns PS00331 Malic enzymes signature. 161 177 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AMF_020 9146de30187e6564e92fe001da57cd1a 750 Gene3D G3DSA:3.40.50.10380 2 162 5.2E-64 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 AMF_020 9146de30187e6564e92fe001da57cd1a 750 Pfam PF01515 Phosphate acetyl/butaryl transferase 436 744 2.9E-74 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 Pfam PF00571 CBS domain 96 142 1.2E-11 T 13-10-2018 IPR000644 CBS domain AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 Pfam PF00571 CBS domain 151 202 9.3E-8 T 13-10-2018 IPR000644 CBS domain AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 SUPERFAMILY SSF54631 65 205 7.07E-33 T 13-10-2018 AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 9 454 8.9E-187 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 SMART SM01240 8 473 1.8E-295 T 13-10-2018 AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 10 473 1.3E-152 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 9 486 79.068 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 Gene3D G3DSA:3.20.20.70 2 486 8.7E-202 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 PIRSF PIRSF000130 2 488 3.0E-196 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 SUPERFAMILY SSF51412 6 477 2.75E-118 T 13-10-2018 AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 297 309 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 SMART SM00116 97 146 6.4E-12 T 13-10-2018 IPR000644 CBS domain AMF_073 41b7b5e563187306d2d00e9b58a76fe2 493 SMART SM00116 159 207 3.4E-5 T 13-10-2018 IPR000644 CBS domain AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 38 1372 0.0 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Gene3D G3DSA:3.90.1110.10 187 265 2.2E-26 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Pfam PF04561 RNA polymerase Rpb2, domain 2 386 484 5.0E-22 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Pfam PF04561 RNA polymerase Rpb2, domain 2 180 252 1.2E-8 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Gene3D G3DSA:2.40.270.10 1071 1277 1.2E-79 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Gene3D G3DSA:3.90.1110.10 347 470 1.4E-29 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 SUPERFAMILY SSF64484 34 1378 0.0 T 13-10-2018 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Gene3D G3DSA:3.90.1100.10 471 648 1.4E-67 T 13-10-2018 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Gene3D G3DSA:2.40.270.10 822 860 1.4E-6 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Gene3D G3DSA:3.90.1100.10 672 743 1.3E-19 T 13-10-2018 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Gene3D G3DSA:3.90.1100.10 37 186 2.3E-51 T 13-10-2018 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Gene3D G3DSA:3.90.1800.10 1287 1366 7.9E-11 T 13-10-2018 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Pfam PF04565 RNA polymerase Rpb2, domain 3 543 611 9.3E-32 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 27 1377 11.735 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Pfam PF10385 RNA polymerase beta subunit external 1 domain 621 686 1.0E-20 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Gene3D G3DSA:2.40.50.100 744 821 1.5E-28 T 13-10-2018 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Pfam PF04560 RNA polymerase Rpb2, domain 7 1301 1375 7.1E-25 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Pfam PF00562 RNA polymerase Rpb2, domain 6 747 1298 1.1E-147 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1099 1111 - T 13-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Gene3D G3DSA:2.40.50.150 861 987 6.4E-33 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_194 4316df35dc5e8a33b9f78514cd4dba9a 1386 Pfam PF04563 RNA polymerase beta subunit 42 526 1.9E-22 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_464 1cc41cf0dbf0a349d4e1e0b39cd6116d 289 PRINTS PR00126 ATP synthase gamma subunit signature 67 86 9.0E-27 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_464 1cc41cf0dbf0a349d4e1e0b39cd6116d 289 PRINTS PR00126 ATP synthase gamma subunit signature 235 254 9.0E-27 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_464 1cc41cf0dbf0a349d4e1e0b39cd6116d 289 PRINTS PR00126 ATP synthase gamma subunit signature 266 287 9.0E-27 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_464 1cc41cf0dbf0a349d4e1e0b39cd6116d 289 PRINTS PR00126 ATP synthase gamma subunit signature 163 180 9.0E-27 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_464 1cc41cf0dbf0a349d4e1e0b39cd6116d 289 Pfam PF00231 ATP synthase 5 288 1.1E-60 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_464 1cc41cf0dbf0a349d4e1e0b39cd6116d 289 Gene3D G3DSA:1.10.287.80 11 284 2.0E-59 T 13-10-2018 AMF_464 1cc41cf0dbf0a349d4e1e0b39cd6116d 289 Gene3D G3DSA:3.40.1380.10 54 207 2.0E-59 T 13-10-2018 AMF_464 1cc41cf0dbf0a349d4e1e0b39cd6116d 289 SUPERFAMILY SSF52943 4 288 1.15E-62 T 13-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_334 80e67f484aa785694b9d0df4151467af 135 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 17 135 16.996 T 13-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 AMF_334 80e67f484aa785694b9d0df4151467af 135 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 38 134 9.0E-31 T 13-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_334 80e67f484aa785694b9d0df4151467af 135 Gene3D G3DSA:1.20.58.1610 16 135 1.9E-35 T 13-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_415 dcc94b3326c4ce119bdbdfcc977f1548 270 Gene3D G3DSA:3.40.50.150 1 194 4.7E-60 T 13-10-2018 AMF_415 dcc94b3326c4ce119bdbdfcc977f1548 270 Pfam PF00398 Ribosomal RNA adenine dimethylase 6 261 5.9E-49 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AMF_415 dcc94b3326c4ce119bdbdfcc977f1548 270 SUPERFAMILY SSF53335 6 262 3.88E-68 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_415 dcc94b3326c4ce119bdbdfcc977f1548 270 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 6 261 49.449 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMF_415 dcc94b3326c4ce119bdbdfcc977f1548 270 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 38 66 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AMF_415 dcc94b3326c4ce119bdbdfcc977f1548 270 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 7 258 8.2E-71 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMF_415 dcc94b3326c4ce119bdbdfcc977f1548 270 Gene3D G3DSA:1.10.8.100 198 261 9.1E-12 T 13-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 AMF_415 dcc94b3326c4ce119bdbdfcc977f1548 270 SMART SM00650 22 193 1.1E-54 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 AMF_199 3030401c98134442baecbbb494e10549 380 Gene3D G3DSA:3.40.640.10 61 280 2.6E-104 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMF_199 3030401c98134442baecbbb494e10549 380 SUPERFAMILY SSF53383 28 366 3.63E-89 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMF_199 3030401c98134442baecbbb494e10549 380 Pfam PF00155 Aminotransferase class I and II 45 364 5.6E-49 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMF_199 3030401c98134442baecbbb494e10549 380 Gene3D G3DSA:3.90.1150.10 45 362 2.6E-104 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMF_921 13ad5560939baacfc712db9f73923e9f 403 SUPERFAMILY SSF56925 285 359 2.09E-8 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_921 13ad5560939baacfc712db9f73923e9f 403 Pfam PF01617 Surface antigen 31 401 1.2E-29 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_921 13ad5560939baacfc712db9f73923e9f 403 Gene3D G3DSA:2.40.160.20 227 389 1.1E-7 T 13-10-2018 AMF_342 070191964a14e748205fcedfa8e4448e 1133 SUPERFAMILY SSF63380 820 920 4.54E-12 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMF_342 070191964a14e748205fcedfa8e4448e 1133 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 499 517 3.6E-7 T 13-10-2018 AMF_342 070191964a14e748205fcedfa8e4448e 1133 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 375 394 3.6E-7 T 13-10-2018 AMF_342 070191964a14e748205fcedfa8e4448e 1133 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 553 571 3.6E-7 T 13-10-2018 AMF_342 070191964a14e748205fcedfa8e4448e 1133 Gene3D G3DSA:2.40.30.10 818 919 5.9E-13 T 13-10-2018 AMF_342 070191964a14e748205fcedfa8e4448e 1133 Gene3D G3DSA:3.40.50.80 921 1047 2.7E-11 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMF_342 070191964a14e748205fcedfa8e4448e 1133 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 373 731 3.3E-11 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_342 070191964a14e748205fcedfa8e4448e 1133 SUPERFAMILY SSF51971 372 718 2.35E-20 T 13-10-2018 AMF_342 070191964a14e748205fcedfa8e4448e 1133 SUPERFAMILY SSF52343 916 1098 1.02E-15 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMF_342 070191964a14e748205fcedfa8e4448e 1133 Gene3D G3DSA:3.50.50.60 639 719 4.4E-5 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_372 944a712e13fd923e11f92029b5f173e0 469 Pfam PF03853 YjeF-related protein N-terminus 26 170 2.2E-31 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMF_372 944a712e13fd923e11f92029b5f173e0 469 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 208 461 1.3E-45 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMF_372 944a712e13fd923e11f92029b5f173e0 469 SUPERFAMILY SSF64153 9 223 4.84E-52 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AMF_372 944a712e13fd923e11f92029b5f173e0 469 PIRSF PIRSF017184 86 468 4.1E-80 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 AMF_372 944a712e13fd923e11f92029b5f173e0 469 PIRSF PIRSF017184 18 89 9.2E-10 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 AMF_372 944a712e13fd923e11f92029b5f173e0 469 SUPERFAMILY SSF53613 199 461 5.51E-55 T 13-10-2018 IPR029056 Ribokinase-like AMF_372 944a712e13fd923e11f92029b5f173e0 469 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 202 466 16.529 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMF_372 944a712e13fd923e11f92029b5f173e0 469 Gene3D G3DSA:3.40.50.10260 14 196 3.4E-49 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AMF_372 944a712e13fd923e11f92029b5f173e0 469 Gene3D G3DSA:3.40.1190.20 202 466 1.0E-59 T 13-10-2018 IPR029056 Ribokinase-like AMF_372 944a712e13fd923e11f92029b5f173e0 469 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 6 192 22.193 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMF_372 944a712e13fd923e11f92029b5f173e0 469 Pfam PF01256 Carbohydrate kinase 235 444 4.0E-42 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMF_123 cee61e6c422f8c57ca6187b412948c2e 113 SMART SM01219 8 109 3.9E-19 T 13-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMF_123 cee61e6c422f8c57ca6187b412948c2e 113 SUPERFAMILY SSF55387 16 109 1.69E-20 T 13-10-2018 AMF_123 cee61e6c422f8c57ca6187b412948c2e 113 Pfam PF01491 Frataxin-like domain 15 109 1.4E-14 T 13-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMF_123 cee61e6c422f8c57ca6187b412948c2e 113 Gene3D G3DSA:3.30.920.10 10 112 2.1E-14 T 13-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMF_041 717575498785418f3c880f279d1b4553 252 Pfam PF00106 short chain dehydrogenase 23 202 5.6E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_041 717575498785418f3c880f279d1b4553 252 SUPERFAMILY SSF51735 20 202 9.17E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_041 717575498785418f3c880f279d1b4553 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 160 2.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_041 717575498785418f3c880f279d1b4553 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 99 110 2.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_041 717575498785418f3c880f279d1b4553 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 22 39 2.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_041 717575498785418f3c880f279d1b4553 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 2.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_041 717575498785418f3c880f279d1b4553 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 189 2.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_041 717575498785418f3c880f279d1b4553 252 Gene3D G3DSA:3.40.50.720 17 250 4.9E-33 T 13-10-2018 AMF_217 bc720daa0221ff05ddd95b1deed488d9 116 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 11 109 7.7E-17 T 13-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 AMF_217 bc720daa0221ff05ddd95b1deed488d9 116 Gene3D G3DSA:1.20.1300.10 2 112 9.6E-16 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_217 bc720daa0221ff05ddd95b1deed488d9 116 SUPERFAMILY SSF81343 8 109 6.76E-18 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_217 bc720daa0221ff05ddd95b1deed488d9 116 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 13 100 9.6E-9 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_933 cb7b9aae27944f936285efff6fb08596 185 PRINTS PR01576 Peptide deformylase signature 109 120 1.4E-33 T 13-10-2018 IPR023635 Peptide deformylase AMF_933 cb7b9aae27944f936285efff6fb08596 185 PRINTS PR01576 Peptide deformylase signature 35 64 1.4E-33 T 13-10-2018 IPR023635 Peptide deformylase AMF_933 cb7b9aae27944f936285efff6fb08596 185 PRINTS PR01576 Peptide deformylase signature 121 139 1.4E-33 T 13-10-2018 IPR023635 Peptide deformylase AMF_933 cb7b9aae27944f936285efff6fb08596 185 PRINTS PR01576 Peptide deformylase signature 140 169 1.4E-33 T 13-10-2018 IPR023635 Peptide deformylase AMF_933 cb7b9aae27944f936285efff6fb08596 185 SUPERFAMILY SSF56420 2 183 6.8E-54 T 13-10-2018 IPR036821 Peptide deformylase superfamily AMF_933 cb7b9aae27944f936285efff6fb08596 185 Pfam PF01327 Polypeptide deformylase 5 172 1.1E-47 T 13-10-2018 IPR023635 Peptide deformylase AMF_933 cb7b9aae27944f936285efff6fb08596 185 Gene3D G3DSA:3.90.45.10 1 185 1.1E-56 T 13-10-2018 IPR036821 Peptide deformylase superfamily AMF_933 cb7b9aae27944f936285efff6fb08596 185 Hamap MF_00163 Peptide deformylase [def]. 2 182 28.105 T 13-10-2018 IPR023635 Peptide deformylase AMF_933 cb7b9aae27944f936285efff6fb08596 185 PIRSF PIRSF004749 1 185 3.4E-49 T 13-10-2018 IPR023635 Peptide deformylase AMF_933 cb7b9aae27944f936285efff6fb08596 185 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 178 3.0E-43 T 13-10-2018 IPR023635 Peptide deformylase AMF_979 81d2c5266e65b5919dd85545ca49e58d 272 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 17 103 9.5E-23 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AMF_979 81d2c5266e65b5919dd85545ca49e58d 272 PIRSF PIRSF006250 1 272 2.3E-74 T 13-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 AMF_979 81d2c5266e65b5919dd85545ca49e58d 272 SUPERFAMILY SSF51690 105 270 2.59E-51 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMF_979 81d2c5266e65b5919dd85545ca49e58d 272 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 6 270 2.1E-76 T 13-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 AMF_979 81d2c5266e65b5919dd85545ca49e58d 272 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 105 269 2.9E-48 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 AMF_979 81d2c5266e65b5919dd85545ca49e58d 272 SUPERFAMILY SSF54675 2 103 1.1E-21 T 13-10-2018 AMF_979 81d2c5266e65b5919dd85545ca49e58d 272 Gene3D G3DSA:3.90.1170.20 8 269 1.4E-92 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 AMF_979 81d2c5266e65b5919dd85545ca49e58d 272 Gene3D G3DSA:3.20.20.70 108 260 1.4E-92 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_560 a6d8190af47ee535325b4e8d32efc19b 251 Gene3D G3DSA:3.10.450.230 113 250 1.7E-20 T 13-10-2018 AMF_560 a6d8190af47ee535325b4e8d32efc19b 251 SUPERFAMILY SSF54427 113 249 1.23E-7 T 13-10-2018 IPR032710 NTF2-like domain superfamily AMF_145 883010e0a5013d5b9d210c8205f35c37 884 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 758 776 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 22 294 8.7E-41 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 307 359 3.4E-10 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 SUPERFAMILY SSF56059 15 382 3.06E-126 T 13-10-2018 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:3.30.470.20 247 344 3.5E-40 T 13-10-2018 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 5 868 0.0 T 13-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 522 866 5.5E-89 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 Pfam PF00391 PEP-utilising enzyme, mobile domain 423 505 2.0E-25 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 SUPERFAMILY SSF51621 513 867 1.44E-117 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:1.20.80.30 114 199 2.9E-86 T 13-10-2018 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:3.20.20.60 534 871 6.9E-137 T 13-10-2018 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 SUPERFAMILY SSF52009 391 514 9.81E-34 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:3.30.1490.20 19 246 2.9E-86 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 PIRSF PIRSF000853 2 876 0.0 T 13-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 451 462 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:3.50.30.10 386 511 3.2E-68 T 13-10-2018 AMF_145 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:1.10.189.10 348 531 3.2E-68 T 13-10-2018 AMF_680 2a0e91001778e3fb26ebf017e3e035af 125 Gene3D G3DSA:3.30.420.100 9 125 1.4E-29 T 13-10-2018 AMF_680 2a0e91001778e3fb26ebf017e3e035af 125 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 13 125 3.4E-26 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_680 2a0e91001778e3fb26ebf017e3e035af 125 SUPERFAMILY SSF53137 12 122 3.14E-35 T 13-10-2018 AMF_680 2a0e91001778e3fb26ebf017e3e035af 125 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 9 125 21.648 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_680 2a0e91001778e3fb26ebf017e3e035af 125 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 12 125 1.6E-28 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1025 b7953f7b5476b055bbb0606f41d0e845 341 Pfam PF02780 Transketolase, C-terminal domain 207 329 7.0E-41 T 13-10-2018 IPR033248 Transketolase, C-terminal domain AMF_1025 b7953f7b5476b055bbb0606f41d0e845 341 Gene3D G3DSA:3.40.50.920 204 338 5.3E-49 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMF_1025 b7953f7b5476b055bbb0606f41d0e845 341 SUPERFAMILY SSF52922 201 337 5.37E-44 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMF_1025 b7953f7b5476b055bbb0606f41d0e845 341 Pfam PF02779 Transketolase, pyrimidine binding domain 14 189 5.3E-50 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_1025 b7953f7b5476b055bbb0606f41d0e845 341 Gene3D G3DSA:3.40.50.970 13 203 1.8E-86 T 13-10-2018 AMF_1025 b7953f7b5476b055bbb0606f41d0e845 341 SUPERFAMILY SSF52518 11 217 9.32E-70 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AMF_1025 b7953f7b5476b055bbb0606f41d0e845 341 SMART SM00861 14 189 1.3E-67 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_177 56dc29c4ee66435e0b9e1ff2a737c2fc 454 Gene3D G3DSA:3.40.50.720 6 98 6.0E-11 T 13-10-2018 AMF_177 56dc29c4ee66435e0b9e1ff2a737c2fc 454 SUPERFAMILY SSF53244 301 442 5.95E-34 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMF_177 56dc29c4ee66435e0b9e1ff2a737c2fc 454 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 10 442 28.441 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMF_177 56dc29c4ee66435e0b9e1ff2a737c2fc 454 SUPERFAMILY SSF53623 102 299 8.24E-43 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMF_177 56dc29c4ee66435e0b9e1ff2a737c2fc 454 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 11 439 3.2E-100 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMF_177 56dc29c4ee66435e0b9e1ff2a737c2fc 454 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 114 137 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 AMF_177 56dc29c4ee66435e0b9e1ff2a737c2fc 454 SUPERFAMILY SSF51984 6 98 1.96E-10 T 13-10-2018 AMF_177 56dc29c4ee66435e0b9e1ff2a737c2fc 454 Pfam PF08245 Mur ligase middle domain 116 240 2.4E-20 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMF_177 56dc29c4ee66435e0b9e1ff2a737c2fc 454 Gene3D G3DSA:3.40.1190.10 100 301 3.2E-49 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMF_177 56dc29c4ee66435e0b9e1ff2a737c2fc 454 Gene3D G3DSA:3.90.190.20 307 445 1.5E-33 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMF_438 f590546e45e17caaf4dde89f2aeaeb91 110 Gene3D G3DSA:1.10.2060.10 57 110 2.7E-20 T 13-10-2018 AMF_438 f590546e45e17caaf4dde89f2aeaeb91 110 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 65 108 5.0E-19 T 13-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMF_438 f590546e45e17caaf4dde89f2aeaeb91 110 SUPERFAMILY SSF81935 9 108 7.45E-35 T 13-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMF_724 e381e792f112eddaae776960d63c3f1e 107 Hamap MF_00580 10 kDa chaperonin [groS]. 15 107 19.493 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_724 e381e792f112eddaae776960d63c3f1e 107 Pfam PF00166 Chaperonin 10 Kd subunit 16 105 2.1E-26 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_724 e381e792f112eddaae776960d63c3f1e 107 SUPERFAMILY SSF50129 13 105 6.24E-25 T 13-10-2018 IPR011032 GroES-like superfamily AMF_724 e381e792f112eddaae776960d63c3f1e 107 PRINTS PR00297 10kDa chaperonin signature 16 31 6.1E-22 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_724 e381e792f112eddaae776960d63c3f1e 107 PRINTS PR00297 10kDa chaperonin signature 93 106 6.1E-22 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_724 e381e792f112eddaae776960d63c3f1e 107 PRINTS PR00297 10kDa chaperonin signature 37 58 6.1E-22 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_724 e381e792f112eddaae776960d63c3f1e 107 PRINTS PR00297 10kDa chaperonin signature 72 84 6.1E-22 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_724 e381e792f112eddaae776960d63c3f1e 107 SMART SM00883 15 106 8.8E-35 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_724 e381e792f112eddaae776960d63c3f1e 107 Gene3D G3DSA:2.30.33.40 10 107 6.3E-27 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 AMF_685 a110657857748fbd6050d04d2748d9fe 80 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 19 78 8.2E-16 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_685 a110657857748fbd6050d04d2748d9fe 80 SUPERFAMILY SSF50104 11 78 4.51E-13 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMF_685 a110657857748fbd6050d04d2748d9fe 80 Gene3D G3DSA:2.30.30.30 1 80 3.6E-17 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMF_685 a110657857748fbd6050d04d2748d9fe 80 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 2 78 1.8E-15 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_590 2a11191ca53d95fc031fec34c7b9f1fa 371 SUPERFAMILY SSF111369 82 297 4.32E-28 T 13-10-2018 AMF_590 2a11191ca53d95fc031fec34c7b9f1fa 371 Gene3D G3DSA:2.40.30.170 82 301 3.8E-42 T 13-10-2018 AMF_590 2a11191ca53d95fc031fec34c7b9f1fa 371 Gene3D G3DSA:1.10.287.470 127 186 3.8E-42 T 13-10-2018 AMF_590 2a11191ca53d95fc031fec34c7b9f1fa 371 Gene3D G3DSA:2.40.420.20 302 369 3.8E-42 T 13-10-2018 AMF_590 2a11191ca53d95fc031fec34c7b9f1fa 371 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 86 285 9.9E-19 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMF_590 2a11191ca53d95fc031fec34c7b9f1fa 371 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 70 370 2.7E-36 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMF_590 2a11191ca53d95fc031fec34c7b9f1fa 371 Gene3D G3DSA:2.40.50.100 92 220 3.8E-42 T 13-10-2018 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 Pfam PF00113 Enolase, C-terminal TIM barrel domain 180 451 3.4E-115 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 SMART SM01192 177 455 9.8E-186 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 Hamap MF_00318 Enolase [eno]. 40 447 42.686 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 ProSitePatterns PS00164 Enolase signature. 370 383 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 PRINTS PR00148 Enolase signature 75 89 3.1E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 PRINTS PR00148 Enolase signature 399 416 3.1E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 PRINTS PR00148 Enolase signature 370 384 3.1E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 PRINTS PR00148 Enolase signature 199 212 3.1E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 PRINTS PR00148 Enolase signature 347 358 3.1E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 PRINTS PR00148 Enolase signature 145 161 3.1E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 Gene3D G3DSA:3.30.390.10 39 165 1.1E-49 T 13-10-2018 IPR029017 Enolase-like, N-terminal AMF_448 65df67a56929bd56af374d6dbed65dcf 457 Pfam PF03952 Enolase, N-terminal domain 42 172 2.5E-54 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 Gene3D G3DSA:3.20.20.120 166 456 2.0E-124 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMF_448 65df67a56929bd56af374d6dbed65dcf 457 SUPERFAMILY SSF51604 178 455 1.27E-114 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMF_448 65df67a56929bd56af374d6dbed65dcf 457 PIRSF PIRSF001400 38 456 2.5E-180 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 42 453 5.4E-188 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 SUPERFAMILY SSF54826 41 174 8.42E-51 T 13-10-2018 AMF_448 65df67a56929bd56af374d6dbed65dcf 457 SMART SM01193 42 172 9.3E-81 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_074 fedd4f4d7004fed434ee25c0a46dd4ae 273 Gene3D G3DSA:2.60.200.30 121 248 6.0E-25 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMF_074 fedd4f4d7004fed434ee25c0a46dd4ae 273 Pfam PF01513 ATP-NAD kinase 46 223 1.4E-17 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMF_074 fedd4f4d7004fed434ee25c0a46dd4ae 273 Hamap MF_00361 NAD kinase [nadK]. 15 273 19.482 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMF_074 fedd4f4d7004fed434ee25c0a46dd4ae 273 SUPERFAMILY SSF111331 42 260 2.35E-51 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMF_074 fedd4f4d7004fed434ee25c0a46dd4ae 273 Gene3D G3DSA:3.40.50.10330 33 120 2.4E-9 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 1 793 86.664 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 Gene3D G3DSA:3.30.230.10 225 404 4.8E-63 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 Gene3D G3DSA:3.40.50.670 695 792 2.2E-22 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 170 1.4E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 ProSitePatterns PS00177 DNA topoisomerase II signature. 429 437 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 SMART SM00433 34 786 3.2E-228 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 721 782 4.6E-27 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 SUPERFAMILY SSF54211 228 398 5.88E-50 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 Gene3D G3DSA:3.30.565.10 2 218 3.0E-84 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 SMART SM00387 30 175 4.9E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 Gene3D G3DSA:3.40.50.670 405 614 1.3E-68 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 4 792 9.2E-277 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 Pfam PF00204 DNA gyrase B 227 397 1.6E-53 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 Pfam PF01751 Toprim domain 426 527 3.1E-17 T 13-10-2018 IPR006171 TOPRIM domain AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 SUPERFAMILY SSF55874 4 209 2.33E-67 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 367 381 5.3E-57 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 746 758 5.3E-57 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 180 195 5.3E-57 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 477 486 5.3E-57 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 226 248 5.3E-57 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 249 267 5.3E-57 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 4 14 5.3E-57 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 381 401 5.3E-57 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 319 335 5.3E-57 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 762 778 5.3E-57 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 195 208 5.3E-57 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 SUPERFAMILY SSF56719 403 784 3.4E-77 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 275 288 6.5E-68 T 13-10-2018 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 494 510 6.5E-68 T 13-10-2018 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 512 529 6.5E-68 T 13-10-2018 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 69 82 6.5E-68 T 13-10-2018 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 725 741 6.5E-68 T 13-10-2018 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 427 441 6.5E-68 T 13-10-2018 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 112 126 6.5E-68 T 13-10-2018 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 34 49 6.5E-68 T 13-10-2018 AMF_480 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 532 544 6.5E-68 T 13-10-2018 AMF_120 b1fa1d3f9587cdfcaf0ae49ba3a6d701 100 SUPERFAMILY SSF46911 29 100 1.96E-23 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_120 b1fa1d3f9587cdfcaf0ae49ba3a6d701 100 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 50 99 7.0E-21 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_120 b1fa1d3f9587cdfcaf0ae49ba3a6d701 100 Pfam PF01084 Ribosomal protein S18 48 97 2.7E-21 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_120 b1fa1d3f9587cdfcaf0ae49ba3a6d701 100 TIGRFAM TIGR00165 S18: ribosomal protein bS18 33 99 5.8E-23 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_120 b1fa1d3f9587cdfcaf0ae49ba3a6d701 100 Gene3D G3DSA:4.10.640.10 26 100 6.0E-23 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_120 b1fa1d3f9587cdfcaf0ae49ba3a6d701 100 PRINTS PR00974 Ribosomal protein S18 family signature 57 67 2.0E-15 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_120 b1fa1d3f9587cdfcaf0ae49ba3a6d701 100 PRINTS PR00974 Ribosomal protein S18 family signature 75 89 2.0E-15 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_120 b1fa1d3f9587cdfcaf0ae49ba3a6d701 100 PRINTS PR00974 Ribosomal protein S18 family signature 89 99 2.0E-15 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_120 b1fa1d3f9587cdfcaf0ae49ba3a6d701 100 PRINTS PR00974 Ribosomal protein S18 family signature 67 74 2.0E-15 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_120 b1fa1d3f9587cdfcaf0ae49ba3a6d701 100 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 31 100 17.137 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1006 377fe63429a0070f7b46c25a039989b4 397 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 11 396 23.608 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMF_1006 377fe63429a0070f7b46c25a039989b4 397 Pfam PF13742 OB-fold nucleic acid binding domain 14 102 5.6E-21 T 13-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 AMF_1006 377fe63429a0070f7b46c25a039989b4 397 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 15 394 9.8E-123 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMF_1006 377fe63429a0070f7b46c25a039989b4 397 Pfam PF02601 Exonuclease VII, large subunit 126 319 3.5E-72 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AMF_1006 377fe63429a0070f7b46c25a039989b4 397 Pfam PF02601 Exonuclease VII, large subunit 321 392 1.1E-7 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AMF_1020 fd7a03e499ad9ec570dc29578032531d 249 Gene3D G3DSA:3.40.50.2020 114 247 5.7E-18 T 13-10-2018 AMF_1020 fd7a03e499ad9ec570dc29578032531d 249 Pfam PF00156 Phosphoribosyl transferase domain 160 246 7.0E-9 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMF_1020 fd7a03e499ad9ec570dc29578032531d 249 SUPERFAMILY SSF53271 61 247 3.15E-28 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AMF_290 147e50e7fef53348c15cf5cc431a009e 401 SUPERFAMILY SSF103473 38 394 1.96E-19 T 13-10-2018 IPR036259 MFS transporter superfamily AMF_290 147e50e7fef53348c15cf5cc431a009e 401 Gene3D G3DSA:1.20.1250.20 4 394 1.6E-12 T 13-10-2018 AMF_290 147e50e7fef53348c15cf5cc431a009e 401 Pfam PF07690 Major Facilitator Superfamily 21 359 3.3E-9 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMF_819 0015e6b3512fc98bf2527c63f487f21c 285 Gene3D G3DSA:1.10.8.10 4 88 1.2E-20 T 13-10-2018 AMF_819 0015e6b3512fc98bf2527c63f487f21c 285 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 6 260 1.8E-53 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AMF_819 0015e6b3512fc98bf2527c63f487f21c 285 SUPERFAMILY SSF53335 8 267 1.39E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_819 0015e6b3512fc98bf2527c63f487f21c 285 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 6 281 36.53 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMF_819 0015e6b3512fc98bf2527c63f487f21c 285 Pfam PF05175 Methyltransferase small domain 116 193 2.0E-10 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AMF_819 0015e6b3512fc98bf2527c63f487f21c 285 Gene3D G3DSA:3.40.50.150 89 281 6.5E-49 T 13-10-2018 AMF_819 0015e6b3512fc98bf2527c63f487f21c 285 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 186 192 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMF_819 0015e6b3512fc98bf2527c63f487f21c 285 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 28 277 4.3E-69 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMF_381 959b7eb8628701ffdd3d53ba3e033e07 209 SUPERFAMILY SSF52833 8 202 2.12E-57 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_381 959b7eb8628701ffdd3d53ba3e033e07 209 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 165 199 8.1E-10 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMF_381 959b7eb8628701ffdd3d53ba3e033e07 209 Gene3D G3DSA:3.40.30.10 8 202 6.7E-67 T 13-10-2018 AMF_381 959b7eb8628701ffdd3d53ba3e033e07 209 PIRSF PIRSF000239 4 206 6.0E-57 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMF_381 959b7eb8628701ffdd3d53ba3e033e07 209 Pfam PF00578 AhpC/TSA family 12 144 2.5E-29 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 239 251 1.6E-21 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 68 90 1.6E-21 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 185 200 1.6E-21 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 206 228 1.6E-21 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 29 432 5.4E-99 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 Gene3D G3DSA:1.10.240.10 246 350 1.4E-29 T 13-10-2018 AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 Pfam PF00579 tRNA synthetases class I (W and Y) 54 344 2.4E-66 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 Gene3D G3DSA:3.40.50.620 18 245 1.4E-80 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 Gene3D G3DSA:3.10.290.10 351 411 1.6E-10 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 SUPERFAMILY SSF52374 28 344 2.41E-88 T 13-10-2018 AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 SUPERFAMILY SSF55174 352 433 1.84E-11 T 13-10-2018 AMF_906 290d447a6e668d4e3414d21fea8f8b94 435 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 26 433 39.322 T 13-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 AMF_121 df839ac100e1928635fa84c4fdac1c66 220 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 2 147 21.268 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_121 df839ac100e1928635fa84c4fdac1c66 220 TIGRFAM TIGR00158 L9: ribosomal protein bL9 3 146 1.9E-31 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_121 df839ac100e1928635fa84c4fdac1c66 220 SUPERFAMILY SSF55658 3 56 1.74E-11 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal AMF_121 df839ac100e1928635fa84c4fdac1c66 220 Gene3D G3DSA:3.10.430.100 64 148 3.7E-19 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AMF_121 df839ac100e1928635fa84c4fdac1c66 220 SUPERFAMILY SSF55653 57 147 2.35E-21 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AMF_121 df839ac100e1928635fa84c4fdac1c66 220 Pfam PF01281 Ribosomal protein L9, N-terminal domain 4 45 2.4E-14 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_121 df839ac100e1928635fa84c4fdac1c66 220 Pfam PF03948 Ribosomal protein L9, C-terminal domain 63 145 1.9E-18 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal AMF_121 df839ac100e1928635fa84c4fdac1c66 220 Gene3D G3DSA:3.40.5.10 2 63 2.0E-13 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_007 256f7f751b4a78634dd2c3e33704b443 124 Gene3D G3DSA:1.10.1660.10 14 89 5.5E-17 T 13-10-2018 AMF_007 256f7f751b4a78634dd2c3e33704b443 124 SUPERFAMILY SSF46955 21 119 2.61E-14 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily AMF_007 256f7f751b4a78634dd2c3e33704b443 124 Pfam PF13411 MerR HTH family regulatory protein 21 86 5.0E-20 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMF_007 256f7f751b4a78634dd2c3e33704b443 124 SMART SM00422 20 89 0.0072 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMF_474 87cff9848b5e5834c23aaf0a05fe3160 104 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 95 5.7E-15 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMF_474 87cff9848b5e5834c23aaf0a05fe3160 104 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 101 2.0E-11 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMF_474 87cff9848b5e5834c23aaf0a05fe3160 104 SUPERFAMILY SSF69754 1 102 1.24E-19 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMF_474 87cff9848b5e5834c23aaf0a05fe3160 104 Gene3D G3DSA:3.30.160.100 1 104 1.9E-15 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMF_599 bfbf00b4ebf3a5498ee1d9e7ed958e29 476 Pfam PF02875 Mur ligase family, glutamate ligase domain 341 391 1.4E-6 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMF_599 bfbf00b4ebf3a5498ee1d9e7ed958e29 476 Gene3D G3DSA:3.90.190.20 332 475 1.1E-33 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMF_599 bfbf00b4ebf3a5498ee1d9e7ed958e29 476 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 41 468 1.1E-112 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_599 bfbf00b4ebf3a5498ee1d9e7ed958e29 476 Gene3D G3DSA:3.40.1190.10 96 324 7.4E-58 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMF_599 bfbf00b4ebf3a5498ee1d9e7ed958e29 476 Pfam PF01225 Mur ligase family, catalytic domain 39 106 7.3E-9 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMF_599 bfbf00b4ebf3a5498ee1d9e7ed958e29 476 SUPERFAMILY SSF63418 21 109 5.62E-21 T 13-10-2018 IPR035911 MurE/MurF, N-terminal AMF_599 bfbf00b4ebf3a5498ee1d9e7ed958e29 476 Gene3D G3DSA:3.40.1390.10 4 89 1.1E-20 T 13-10-2018 AMF_599 bfbf00b4ebf3a5498ee1d9e7ed958e29 476 SUPERFAMILY SSF53623 115 324 1.05E-44 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMF_599 bfbf00b4ebf3a5498ee1d9e7ed958e29 476 SUPERFAMILY SSF53244 340 468 7.1E-32 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMF_599 bfbf00b4ebf3a5498ee1d9e7ed958e29 476 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 7 469 31.311 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_599 bfbf00b4ebf3a5498ee1d9e7ed958e29 476 Pfam PF08245 Mur ligase middle domain 120 305 2.9E-40 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMF_101 d8254aac58615eb3789d76495853d611 430 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 7 402 3.4E-130 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AMF_101 d8254aac58615eb3789d76495853d611 430 PIRSF PIRSF001549 3 413 9.9E-108 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AMF_101 d8254aac58615eb3789d76495853d611 430 Pfam PF03129 Anticodon binding domain 324 411 2.4E-13 T 13-10-2018 IPR004154 Anticodon-binding AMF_101 d8254aac58615eb3789d76495853d611 430 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 4 415 29.135 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AMF_101 d8254aac58615eb3789d76495853d611 430 SUPERFAMILY SSF55681 6 314 7.47E-90 T 13-10-2018 AMF_101 d8254aac58615eb3789d76495853d611 430 Gene3D G3DSA:3.40.50.800 320 418 5.9E-18 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily AMF_101 d8254aac58615eb3789d76495853d611 430 Pfam PF13393 Histidyl-tRNA synthetase 11 310 6.4E-40 T 13-10-2018 AMF_101 d8254aac58615eb3789d76495853d611 430 SUPERFAMILY SSF52954 321 410 8.67E-19 T 13-10-2018 AMF_101 d8254aac58615eb3789d76495853d611 430 Gene3D G3DSA:3.30.930.10 3 319 1.5E-102 T 13-10-2018 AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 Gene3D G3DSA:3.30.1330.10 634 829 7.4E-50 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 SUPERFAMILY SSF56042 458 675 2.24E-46 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 SUPERFAMILY SSF55326 248 446 2.41E-39 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 Gene3D G3DSA:3.90.650.10 449 630 5.6E-48 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 Gene3D G3DSA:3.30.1330.10 270 447 1.9E-44 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 SUPERFAMILY SSF55326 647 833 1.09E-49 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 Pfam PF02769 AIR synthase related protein, C-terminal domain 459 609 6.5E-21 T 13-10-2018 IPR010918 PurM-like, C-terminal domain AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 Pfam PF02769 AIR synthase related protein, C-terminal domain 845 985 5.0E-10 T 13-10-2018 IPR010918 PurM-like, C-terminal domain AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 SUPERFAMILY SSF56042 841 988 5.38E-25 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 240 1016 185.506 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 Gene3D G3DSA:3.90.650.10 838 1008 4.5E-29 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 Pfam PF00586 AIR synthase related protein, N-terminal domain 324 444 7.3E-14 T 13-10-2018 IPR016188 PurM-like, N-terminal domain AMF_743 1741cdd9ef2e4241f792fb7b063d85e6 1016 Pfam PF00586 AIR synthase related protein, N-terminal domain 720 799 9.8E-4 T 13-10-2018 IPR016188 PurM-like, N-terminal domain AMF_032 cdffd2e38d212984c8d57884e8bf18e8 185 PIRSF PIRSF004553 1 182 6.0E-39 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AMF_032 cdffd2e38d212984c8d57884e8bf18e8 185 SUPERFAMILY SSF53335 2 157 1.25E-32 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_032 cdffd2e38d212984c8d57884e8bf18e8 185 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 116 122 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMF_032 cdffd2e38d212984c8d57884e8bf18e8 185 Gene3D G3DSA:3.40.50.150 1 182 7.0E-38 T 13-10-2018 AMF_032 cdffd2e38d212984c8d57884e8bf18e8 185 Pfam PF03602 Conserved hypothetical protein 95 2 178 1.8E-30 T 13-10-2018 AMF_196 47d35f1e22005c15b8af4a445798d66c 339 Gene3D G3DSA:3.30.420.10 100 325 5.1E-72 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMF_196 47d35f1e22005c15b8af4a445798d66c 339 SUPERFAMILY SSF53098 112 307 8.8E-63 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AMF_196 47d35f1e22005c15b8af4a445798d66c 339 Pfam PF01351 Ribonuclease HII 122 300 6.7E-41 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain AMF_196 47d35f1e22005c15b8af4a445798d66c 339 Hamap MF_00052_B Ribonuclease HII [rnhB]. 120 301 34.587 T 13-10-2018 IPR022898 Ribonuclease HII GO:0004523 AMF_824 d98f30c36fc049e90327c9550cb2293d 380 SUPERFAMILY SSF56601 3 273 7.19E-69 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMF_824 d98f30c36fc049e90327c9550cb2293d 380 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 273 362 1.6E-14 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMF_824 d98f30c36fc049e90327c9550cb2293d 380 SUPERFAMILY SSF69189 273 365 8.44E-22 T 13-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMF_824 d98f30c36fc049e90327c9550cb2293d 380 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 30 250 9.6E-61 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMF_824 d98f30c36fc049e90327c9550cb2293d 380 Gene3D G3DSA:2.60.410.10 273 362 3.0E-18 T 13-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMF_824 d98f30c36fc049e90327c9550cb2293d 380 SMART SM00936 273 363 1.1E-24 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMF_824 d98f30c36fc049e90327c9550cb2293d 380 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 140 153 9.4E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMF_824 d98f30c36fc049e90327c9550cb2293d 380 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 113 130 9.4E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMF_824 d98f30c36fc049e90327c9550cb2293d 380 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 60 71 9.4E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMF_824 d98f30c36fc049e90327c9550cb2293d 380 Gene3D G3DSA:3.40.710.10 21 272 1.9E-73 T 13-10-2018 AMF_261 50009bfb079f918da3f9c63661131f75 128 SUPERFAMILY SSF47240 2 98 1.19E-10 T 13-10-2018 IPR009078 Ferritin-like superfamily AMF_261 50009bfb079f918da3f9c63661131f75 128 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 1 126 2.1E-46 T 13-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 AMF_738 4590750e8b351c6668ad1ea835d6b0b8 321 PIRSF PIRSF004532 2 313 1.7E-103 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMF_738 4590750e8b351c6668ad1ea835d6b0b8 321 Gene3D G3DSA:3.40.190.90 122 282 6.1E-100 T 13-10-2018 AMF_738 4590750e8b351c6668ad1ea835d6b0b8 321 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 6 307 6.1E-81 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMF_738 4590750e8b351c6668ad1ea835d6b0b8 321 Gene3D G3DSA:3.30.540.10 8 304 6.1E-100 T 13-10-2018 AMF_738 4590750e8b351c6668ad1ea835d6b0b8 321 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 6 305 1.1E-107 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMF_738 4590750e8b351c6668ad1ea835d6b0b8 321 SUPERFAMILY SSF56655 6 309 2.14E-80 T 13-10-2018 AMF_990 6a363eb0ab257bf70341f94a4974c181 323 PIRSF PIRSF000116 2 204 5.6E-32 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMF_990 6a363eb0ab257bf70341f94a4974c181 323 PIRSF PIRSF000116 199 323 1.9E-14 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMF_990 6a363eb0ab257bf70341f94a4974c181 323 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 12 170 5.3E-52 T 13-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMF_990 6a363eb0ab257bf70341f94a4974c181 323 SUPERFAMILY SSF51735 6 170 2.12E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_990 6a363eb0ab257bf70341f94a4974c181 323 SUPERFAMILY SSF48179 181 322 1.51E-48 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMF_990 6a363eb0ab257bf70341f94a4974c181 323 Gene3D G3DSA:3.40.50.720 1 177 3.3E-55 T 13-10-2018 AMF_990 6a363eb0ab257bf70341f94a4974c181 323 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 181 322 4.5E-44 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMF_990 6a363eb0ab257bf70341f94a4974c181 323 Gene3D G3DSA:1.10.3730.40 180 323 4.1E-51 T 13-10-2018 AMF_990 6a363eb0ab257bf70341f94a4974c181 323 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 12 322 6.6E-91 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMF_983 ae74eb027aa9b64fb4de458cbb404d50 346 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 17 344 2.5E-91 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMF_983 ae74eb027aa9b64fb4de458cbb404d50 346 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 17 344 7.6E-102 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMF_983 ae74eb027aa9b64fb4de458cbb404d50 346 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 7 346 40.079 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMF_983 ae74eb027aa9b64fb4de458cbb404d50 346 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 25 34 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMF_983 ae74eb027aa9b64fb4de458cbb404d50 346 Gene3D G3DSA:3.20.20.210 1 346 4.9E-103 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMF_983 ae74eb027aa9b64fb4de458cbb404d50 346 SUPERFAMILY SSF51726 16 345 1.06E-80 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMF_150 ce289d0ce10b860288286ee5d0633155 308 Hamap MF_00162 Glutathione synthetase [gshB]. 1 306 103.39 T 13-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMF_150 ce289d0ce10b860288286ee5d0633155 308 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 112 2.1E-26 T 13-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMF_150 ce289d0ce10b860288286ee5d0633155 308 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 301 1.4E-124 T 13-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMF_150 ce289d0ce10b860288286ee5d0633155 308 SUPERFAMILY SSF52440 2 114 1.87E-25 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMF_150 ce289d0ce10b860288286ee5d0633155 308 Gene3D G3DSA:3.30.1490.20 129 192 1.2E-83 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMF_150 ce289d0ce10b860288286ee5d0633155 308 SUPERFAMILY SSF56059 116 300 1.61E-45 T 13-10-2018 AMF_150 ce289d0ce10b860288286ee5d0633155 308 Gene3D G3DSA:3.30.470.20 107 285 1.2E-83 T 13-10-2018 AMF_150 ce289d0ce10b860288286ee5d0633155 308 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 116 287 1.4E-57 T 13-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMF_150 ce289d0ce10b860288286ee5d0633155 308 Gene3D G3DSA:3.40.50.20 12 106 1.2E-83 T 13-10-2018 AMF_825 61fcc3693550e72ac678f9c5fa058eab 409 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 12 185 8.5E-7 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AMF_825 61fcc3693550e72ac678f9c5fa058eab 409 Pfam PF13899 Thioredoxin-like 294 369 3.0E-11 T 13-10-2018 AMF_825 61fcc3693550e72ac678f9c5fa058eab 409 SUPERFAMILY SSF52833 286 396 2.89E-13 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_825 61fcc3693550e72ac678f9c5fa058eab 409 Gene3D G3DSA:3.40.30.10 285 401 1.7E-9 T 13-10-2018 AMF_677 bd322229a892fb342347e6beaf7d143f 433 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 14 416 7.7E-110 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMF_677 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 173 196 4.2E-83 T 13-10-2018 AMF_677 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 147 172 4.2E-83 T 13-10-2018 AMF_677 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 15 33 4.2E-83 T 13-10-2018 AMF_677 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 305 327 4.2E-83 T 13-10-2018 AMF_677 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 360 378 4.2E-83 T 13-10-2018 AMF_677 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 108 131 4.2E-83 T 13-10-2018 AMF_677 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 392 410 4.2E-83 T 13-10-2018 AMF_677 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 67 87 4.2E-83 T 13-10-2018 AMF_677 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 265 284 4.2E-83 T 13-10-2018 AMF_677 bd322229a892fb342347e6beaf7d143f 433 PIRSF PIRSF004557 6 430 1.8E-113 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMF_677 bd322229a892fb342347e6beaf7d143f 433 SUPERFAMILY SSF103491 8 414 7.59E-111 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMF_677 bd322229a892fb342347e6beaf7d143f 433 ProSitePatterns PS00756 Protein secY signature 2. 166 183 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMF_677 bd322229a892fb342347e6beaf7d143f 433 Gene3D G3DSA:1.10.3370.10 5 419 6.3E-136 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMF_677 bd322229a892fb342347e6beaf7d143f 433 Pfam PF00344 SecY translocase 68 406 1.4E-98 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMF_677 bd322229a892fb342347e6beaf7d143f 433 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 423 25.916 T 13-10-2018 IPR026593 Protein translocase subunit SecY AMF_677 bd322229a892fb342347e6beaf7d143f 433 ProSitePatterns PS00755 Protein secY signature 1. 68 87 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMF_016 642162823c326f3d3aafe82a047d587b 109 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 8 77 1.5E-17 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMF_016 642162823c326f3d3aafe82a047d587b 109 PRINTS PR01651 Protein-export SecG membrane protein signature 60 82 1.8E-10 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMF_016 642162823c326f3d3aafe82a047d587b 109 PRINTS PR01651 Protein-export SecG membrane protein signature 8 28 1.8E-10 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMF_016 642162823c326f3d3aafe82a047d587b 109 PRINTS PR01651 Protein-export SecG membrane protein signature 44 60 1.8E-10 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMF_016 642162823c326f3d3aafe82a047d587b 109 Pfam PF03840 Preprotein translocase SecG subunit 9 77 3.2E-15 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 80 636 18.847 T 13-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 Gene3D G3DSA:2.70.98.90 141 415 2.2E-30 T 13-10-2018 IPR038221 YidC, periplasmic domain superfamily AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 Pfam PF14849 YidC periplasmic domain 142 427 1.8E-70 T 13-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 80 436 1.4E-80 T 13-10-2018 IPR028053 Membrane insertase YidC, N-terminal AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 Pfam PF02096 60Kd inner membrane protein 438 634 4.0E-53 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 PRINTS PR01900 YidC translocation/secretion protein signature 423 439 2.5E-15 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 PRINTS PR01900 YidC translocation/secretion protein signature 569 584 2.5E-15 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 PRINTS PR01900 YidC translocation/secretion protein signature 589 613 2.5E-15 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 437 634 2.6E-60 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 PRINTS PR00701 60kDa inner membrane protein signature 499 522 1.5E-14 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 PRINTS PR00701 60kDa inner membrane protein signature 326 341 1.5E-14 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 PRINTS PR00701 60kDa inner membrane protein signature 408 428 1.5E-14 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMF_339 278aabe59e08a6fc68c6edf65b1f27cf 647 PRINTS PR00701 60kDa inner membrane protein signature 148 169 1.5E-14 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 PRINTS PR00906 SecA protein signature 87 111 4.0E-64 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 PRINTS PR00906 SecA protein signature 125 139 4.0E-64 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 PRINTS PR00906 SecA protein signature 351 373 4.0E-64 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 PRINTS PR00906 SecA protein signature 141 151 4.0E-64 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 PRINTS PR00906 SecA protein signature 194 214 4.0E-64 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 PRINTS PR00906 SecA protein signature 388 405 4.0E-64 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 PRINTS PR00906 SecA protein signature 425 438 4.0E-64 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 SUPERFAMILY SSF52540 429 636 3.41E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 Pfam PF02810 SEC-C motif 875 892 1.5E-9 T 13-10-2018 IPR004027 SEC-C motif AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 ProSitePatterns PS01312 SecA family signature. 512 527 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 Gene3D G3DSA:3.90.1440.10 253 380 1.4E-169 T 13-10-2018 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 Hamap MF_01382 Protein translocase subunit SecA [secA]. 28 849 19.109 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 Gene3D G3DSA:3.40.50.300 46 427 1.4E-169 T 13-10-2018 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 Gene3D G3DSA:3.40.50.300 429 637 9.1E-86 T 13-10-2018 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 SUPERFAMILY SSF81886 638 883 6.67E-60 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 52 832 0.0 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 SUPERFAMILY SSF52540 45 427 3.28E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 Pfam PF07517 SecA DEAD-like domain 44 413 2.4E-123 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 SMART SM00958 252 370 3.9E-71 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 SUPERFAMILY SSF81767 251 380 1.06E-40 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 Pfam PF01043 SecA preprotein cross-linking domain 257 370 1.2E-36 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 Gene3D G3DSA:1.10.3060.10 639 849 7.9E-48 T 13-10-2018 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 Pfam PF07516 SecA Wing and Scaffold domain 635 846 4.5E-50 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMF_848 c919e48dbbcd9ec40d7c9ae177360295 896 SMART SM00957 29 414 6.8E-270 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 Hamap MF_00195 GTPase Der [der]. 1 432 32.28 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 Gene3D G3DSA:3.40.50.300 168 348 2.6E-42 T 13-10-2018 AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 SUPERFAMILY SSF52540 3 164 1.09E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 350 429 2.2E-24 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 172 305 1.3E-22 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 155 3.5E-22 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 429 2.4E-148 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 PIRSF PIRSF006485 1 437 1.0E-156 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 Gene3D G3DSA:3.40.50.300 1 159 9.9E-37 T 13-10-2018 AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 Pfam PF01926 50S ribosome-binding GTPase 3 118 1.3E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 Pfam PF01926 50S ribosome-binding GTPase 176 293 1.0E-20 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 Gene3D G3DSA:3.30.300.20 350 431 3.9E-22 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 SUPERFAMILY SSF52540 167 435 6.32E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 4 24 6.8E-7 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_593 9795fe9fc89c69be470f5487eb01bf26 438 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 88 6.8E-7 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_581 41bed6957d84f271f56b369caedc3c89 99 SUPERFAMILY SSF50022 3 89 1.03E-28 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMF_581 41bed6957d84f271f56b369caedc3c89 99 PRINTS PR00162 Rieske 2Fe-2S subunit signature 51 63 1.3E-16 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMF_581 41bed6957d84f271f56b369caedc3c89 99 PRINTS PR00162 Rieske 2Fe-2S subunit signature 63 75 1.3E-16 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMF_581 41bed6957d84f271f56b369caedc3c89 99 PRINTS PR00162 Rieske 2Fe-2S subunit signature 29 40 1.3E-16 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMF_581 41bed6957d84f271f56b369caedc3c89 99 Pfam PF00355 Rieske [2Fe-2S] domain 21 76 2.3E-12 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMF_581 41bed6957d84f271f56b369caedc3c89 99 Gene3D G3DSA:2.102.10.10 1 91 1.8E-33 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMF_581 41bed6957d84f271f56b369caedc3c89 99 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 3 91 5.6E-33 T 13-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 AMF_589 e13c74362d81df7d6a07e2faeb0fa0cb 111 Pfam PF01176 Translation initiation factor 1A / IF-1 39 105 6.2E-15 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 AMF_589 e13c74362d81df7d6a07e2faeb0fa0cb 111 Gene3D G3DSA:2.40.50.140 32 107 8.2E-23 T 13-10-2018 AMF_589 e13c74362d81df7d6a07e2faeb0fa0cb 111 SUPERFAMILY SSF50249 22 110 3.18E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_589 e13c74362d81df7d6a07e2faeb0fa0cb 111 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 33 105 1.6E-19 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMF_076 66c2075fd81a840629e4b62dc97b75d9 99 SUPERFAMILY SSF143800 27 98 2.12E-12 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_076 66c2075fd81a840629e4b62dc97b75d9 99 Pfam PF01197 Ribosomal protein L31 27 97 6.8E-15 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_076 66c2075fd81a840629e4b62dc97b75d9 99 Gene3D G3DSA:2.30.170.50 27 98 3.1E-9 T 13-10-2018 AMF_076 66c2075fd81a840629e4b62dc97b75d9 99 TIGRFAM TIGR00105 L31: ribosomal protein bL31 27 98 5.3E-12 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_1022 b26835ffd808fe0fae334bd92509333a 563 Pfam PF00999 Sodium/hydrogen exchanger family 11 374 2.1E-57 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMF_1022 b26835ffd808fe0fae334bd92509333a 563 Pfam PF02254 TrkA-N domain 408 521 4.1E-20 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMF_1022 b26835ffd808fe0fae334bd92509333a 563 Gene3D G3DSA:1.20.1530.20 3 383 1.8E-78 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily AMF_1022 b26835ffd808fe0fae334bd92509333a 563 SUPERFAMILY SSF51735 406 536 3.38E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_1022 b26835ffd808fe0fae334bd92509333a 563 Gene3D G3DSA:3.40.50.720 404 563 4.6E-30 T 13-10-2018 AMF_171 b8878616bebafa67e8e11ae223478b44 210 Pfam PF02630 SCO1/SenC 54 185 6.0E-34 T 13-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_171 b8878616bebafa67e8e11ae223478b44 210 SUPERFAMILY SSF52833 54 193 1.31E-38 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_171 b8878616bebafa67e8e11ae223478b44 210 Gene3D G3DSA:3.40.30.10 49 196 1.3E-41 T 13-10-2018 AMF_427 d0d2c8cb782e9b955078ea1f2f30016a 168 SUPERFAMILY SSF53067 7 123 1.19E-29 T 13-10-2018 AMF_427 d0d2c8cb782e9b955078ea1f2f30016a 168 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 133 145 5.2E-35 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_427 d0d2c8cb782e9b955078ea1f2f30016a 168 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 8 21 5.2E-35 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_427 d0d2c8cb782e9b955078ea1f2f30016a 168 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 156 168 5.2E-35 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_427 d0d2c8cb782e9b955078ea1f2f30016a 168 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 99 118 5.2E-35 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_427 d0d2c8cb782e9b955078ea1f2f30016a 168 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 78 98 5.2E-35 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_427 d0d2c8cb782e9b955078ea1f2f30016a 168 Gene3D G3DSA:3.30.420.40 131 167 1.4E-59 T 13-10-2018 AMF_427 d0d2c8cb782e9b955078ea1f2f30016a 168 Pfam PF00814 Glycoprotease family 27 167 1.4E-48 T 13-10-2018 IPR000905 Gcp-like domain AMF_427 d0d2c8cb782e9b955078ea1f2f30016a 168 Gene3D G3DSA:3.30.420.40 7 130 1.4E-59 T 13-10-2018 AMF_846 3b6d8ab066e91e8146e9af7ab18764e7 501 Pfam PF01171 PP-loop family 72 251 2.5E-57 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AMF_846 3b6d8ab066e91e8146e9af7ab18764e7 501 SUPERFAMILY SSF52402 64 259 7.94E-51 T 13-10-2018 AMF_846 3b6d8ab066e91e8146e9af7ab18764e7 501 Gene3D G3DSA:3.40.50.620 59 281 7.4E-64 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_846 3b6d8ab066e91e8146e9af7ab18764e7 501 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 53 400 21.367 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMF_846 3b6d8ab066e91e8146e9af7ab18764e7 501 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 72 253 2.3E-55 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMF_720 56c4cc26601867581a478e1e24768a0c 454 Gene3D G3DSA:2.30.40.10 34 450 5.0E-130 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMF_720 56c4cc26601867581a478e1e24768a0c 454 Hamap MF_00220_B Dihydroorotase [pyrC]. 28 453 41.052 T 13-10-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_720 56c4cc26601867581a478e1e24768a0c 454 SUPERFAMILY SSF51338 31 452 2.59E-22 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMF_720 56c4cc26601867581a478e1e24768a0c 454 Pfam PF01979 Amidohydrolase family 82 450 2.7E-25 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMF_720 56c4cc26601867581a478e1e24768a0c 454 Gene3D G3DSA:3.20.20.140 87 397 5.0E-130 T 13-10-2018 AMF_720 56c4cc26601867581a478e1e24768a0c 454 ProSitePatterns PS00482 Dihydroorotase signature 1. 89 97 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_720 56c4cc26601867581a478e1e24768a0c 454 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 72 451 3.2E-123 T 13-10-2018 AMF_720 56c4cc26601867581a478e1e24768a0c 454 SUPERFAMILY SSF51556 86 396 4.33E-99 T 13-10-2018 IPR032466 Metal-dependent hydrolase AMF_720 56c4cc26601867581a478e1e24768a0c 454 ProSitePatterns PS00483 Dihydroorotase signature 2. 333 344 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_069 f7fa762ca03720ec848f1d25d39fc83a 115 TIGRFAM TIGR01068 thioredoxin: thioredoxin 14 101 1.5E-30 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMF_069 f7fa762ca03720ec848f1d25d39fc83a 115 ProSitePatterns PS00194 Thioredoxin family active site. 28 46 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMF_069 f7fa762ca03720ec848f1d25d39fc83a 115 Gene3D G3DSA:3.40.30.10 2 110 4.2E-31 T 13-10-2018 AMF_069 f7fa762ca03720ec848f1d25d39fc83a 115 PRINTS PR00421 Thioredoxin family signature 35 44 2.5E-8 T 13-10-2018 AMF_069 f7fa762ca03720ec848f1d25d39fc83a 115 PRINTS PR00421 Thioredoxin family signature 27 35 2.5E-8 T 13-10-2018 AMF_069 f7fa762ca03720ec848f1d25d39fc83a 115 PRINTS PR00421 Thioredoxin family signature 75 86 2.5E-8 T 13-10-2018 AMF_069 f7fa762ca03720ec848f1d25d39fc83a 115 PIRSF PIRSF000077 5 110 2.1E-34 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMF_069 f7fa762ca03720ec848f1d25d39fc83a 115 SUPERFAMILY SSF52833 5 110 6.0E-32 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_069 f7fa762ca03720ec848f1d25d39fc83a 115 Pfam PF00085 Thioredoxin 9 106 1.5E-27 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMF_084 b2bb2dbffc96af496b0e8f707b9f02bc 436 Pfam PF00675 Insulinase (Peptidase family M16) 31 176 1.9E-37 T 13-10-2018 IPR011765 Peptidase M16, N-terminal AMF_084 b2bb2dbffc96af496b0e8f707b9f02bc 436 Gene3D G3DSA:3.30.830.10 20 233 2.4E-63 T 13-10-2018 AMF_084 b2bb2dbffc96af496b0e8f707b9f02bc 436 Pfam PF05193 Peptidase M16 inactive domain 184 354 1.8E-39 T 13-10-2018 IPR007863 Peptidase M16, C-terminal AMF_084 b2bb2dbffc96af496b0e8f707b9f02bc 436 Gene3D G3DSA:3.30.830.10 234 436 1.0E-55 T 13-10-2018 AMF_084 b2bb2dbffc96af496b0e8f707b9f02bc 436 SUPERFAMILY SSF63411 236 429 3.97E-43 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_084 b2bb2dbffc96af496b0e8f707b9f02bc 436 SUPERFAMILY SSF63411 22 220 1.59E-53 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_084 b2bb2dbffc96af496b0e8f707b9f02bc 436 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 51 74 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMF_594 651a8ba1056317f0934ed0cdb61ceb2d 525 SUPERFAMILY SSF64158 108 322 2.48E-67 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_594 651a8ba1056317f0934ed0cdb61ceb2d 525 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 117 311 1.6E-57 T 13-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_594 651a8ba1056317f0934ed0cdb61ceb2d 525 Gene3D G3DSA:3.40.1450.10 108 324 1.1E-184 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_594 651a8ba1056317f0934ed0cdb61ceb2d 525 PIRSF PIRSF001492 30 525 9.9E-187 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_594 651a8ba1056317f0934ed0cdb61ceb2d 525 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 36 522 1.4E-176 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_594 651a8ba1056317f0934ed0cdb61ceb2d 525 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 35 523 43.523 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_594 651a8ba1056317f0934ed0cdb61ceb2d 525 Gene3D G3DSA:3.40.720.10 37 522 1.1E-184 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMF_594 651a8ba1056317f0934ed0cdb61ceb2d 525 SUPERFAMILY SSF53649 37 522 7.85E-65 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMF_594 651a8ba1056317f0934ed0cdb61ceb2d 525 Pfam PF01676 Metalloenzyme superfamily 36 510 7.4E-68 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AMF_223 5bbf336392563970dc2bcd005a555a99 250 SUPERFAMILY SSF55174 54 249 1.7E-53 T 13-10-2018 AMF_223 5bbf336392563970dc2bcd005a555a99 250 SMART SM01390 52 138 1.9E-22 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AMF_223 5bbf336392563970dc2bcd005a555a99 250 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 53 138 2.2E-18 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AMF_223 5bbf336392563970dc2bcd005a555a99 250 SMART SM00363 139 203 8.8E-18 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_223 5bbf336392563970dc2bcd005a555a99 250 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 51 250 27.26 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMF_223 5bbf336392563970dc2bcd005a555a99 250 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 53 249 1.8E-62 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMF_223 5bbf336392563970dc2bcd005a555a99 250 Gene3D G3DSA:3.10.290.10 138 233 3.9E-60 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMF_223 5bbf336392563970dc2bcd005a555a99 250 ProSitePatterns PS00632 Ribosomal protein S4 signature. 137 161 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_223 5bbf336392563970dc2bcd005a555a99 250 Gene3D G3DSA:1.10.1050.10 54 249 3.9E-60 T 13-10-2018 AMF_223 5bbf336392563970dc2bcd005a555a99 250 Pfam PF01479 S4 domain 140 186 2.0E-17 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_648 f40a867cf114313d7858fe550f728383 492 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 23 478 1.5E-137 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 AMF_648 f40a867cf114313d7858fe550f728383 492 Pfam PF03796 DnaB-like helicase C terminal domain 200 476 4.3E-96 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 AMF_648 f40a867cf114313d7858fe550f728383 492 SUPERFAMILY SSF52540 199 470 1.93E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_648 f40a867cf114313d7858fe550f728383 492 SUPERFAMILY SSF48024 22 131 1.7E-24 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 AMF_648 f40a867cf114313d7858fe550f728383 492 Gene3D G3DSA:3.40.50.300 179 477 2.0E-95 T 13-10-2018 AMF_648 f40a867cf114313d7858fe550f728383 492 Gene3D G3DSA:1.10.860.10 21 178 2.7E-27 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AMF_648 f40a867cf114313d7858fe550f728383 492 Pfam PF00772 DnaB-like helicase N terminal domain 22 121 1.4E-20 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 PRINTS PR01874 DNA repair protein radA signature 15 39 1.8E-85 T 13-10-2018 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 PRINTS PR01874 DNA repair protein radA signature 125 142 1.8E-85 T 13-10-2018 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 PRINTS PR01874 DNA repair protein radA signature 324 347 1.8E-85 T 13-10-2018 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 PRINTS PR01874 DNA repair protein radA signature 214 242 1.8E-85 T 13-10-2018 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 PRINTS PR01874 DNA repair protein radA signature 249 275 1.8E-85 T 13-10-2018 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 PRINTS PR01874 DNA repair protein radA signature 175 199 1.8E-85 T 13-10-2018 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 PRINTS PR01874 DNA repair protein radA signature 83 111 1.8E-85 T 13-10-2018 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 TIGRFAM TIGR00416 sms: DNA repair protein RadA 9 449 9.5E-155 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 Pfam PF13541 Subunit ChlI of Mg-chelatase 343 430 1.8E-8 T 13-10-2018 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 Hamap MF_01498 DNA repair protein RadA [radA]. 26 456 40.275 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 SUPERFAMILY SSF52540 69 287 6.62E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 Gene3D G3DSA:3.30.230.10 333 455 1.5E-11 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 SMART SM00382 91 245 7.8E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 SUPERFAMILY SSF54211 256 451 2.39E-33 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 Gene3D G3DSA:3.40.50.300 69 280 1.4E-36 T 13-10-2018 AMF_116 c79f59ca53838dc5ceedc4ccdfe223c5 456 Pfam PF06745 KaiC 79 144 3.8E-9 T 13-10-2018 IPR014774 KaiC-like domain AMF_093 b7b498e17e56cb21485bb4120105c673 999 Pfam PF13502 AsmA-like C-terminal region 838 955 1.5E-10 T 13-10-2018 IPR032712 AsmA-like, C-terminal AMF_093 b7b498e17e56cb21485bb4120105c673 999 Pfam PF13116 Protein of unknown function 344 470 3.6E-13 T 13-10-2018 IPR025263 Domain of unknown function DUF3971 AMF_853 0cf78a11967717d14602349ab163a819 233 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 7 205 21.121 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AMF_853 0cf78a11967717d14602349ab163a819 233 Gene3D G3DSA:3.40.50.300 7 211 1.2E-45 T 13-10-2018 AMF_853 0cf78a11967717d14602349ab163a819 233 Pfam PF13500 AAA domain 10 179 4.5E-27 T 13-10-2018 AMF_853 0cf78a11967717d14602349ab163a819 233 PIRSF PIRSF006755 6 211 1.9E-36 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AMF_853 0cf78a11967717d14602349ab163a819 233 SUPERFAMILY SSF52540 7 202 6.38E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_853 0cf78a11967717d14602349ab163a819 233 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 11 177 2.4E-33 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AMF_984 2bfc38dc68e37276583ef4a21e9ddb3c 293 Gene3D G3DSA:3.30.465.10 199 291 2.2E-15 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMF_984 2bfc38dc68e37276583ef4a21e9ddb3c 293 Gene3D G3DSA:3.10.580.10 57 198 5.2E-48 T 13-10-2018 AMF_984 2bfc38dc68e37276583ef4a21e9ddb3c 293 SMART SM01091 206 288 4.6E-15 T 13-10-2018 IPR005170 Transporter-associated domain AMF_984 2bfc38dc68e37276583ef4a21e9ddb3c 293 SUPERFAMILY SSF56176 203 284 1.04E-14 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMF_984 2bfc38dc68e37276583ef4a21e9ddb3c 293 SUPERFAMILY SSF54631 70 199 7.32E-27 T 13-10-2018 AMF_984 2bfc38dc68e37276583ef4a21e9ddb3c 293 Pfam PF00571 CBS domain 140 190 2.5E-4 T 13-10-2018 IPR000644 CBS domain AMF_984 2bfc38dc68e37276583ef4a21e9ddb3c 293 Pfam PF03471 Transporter associated domain 208 286 3.3E-12 T 13-10-2018 IPR005170 Transporter-associated domain AMF_083 0fdeca1fccacfeef7367fb021dadd5d7 272 Pfam PF13462 Thioredoxin 84 251 3.2E-43 T 13-10-2018 IPR012336 Thioredoxin-like fold AMF_083 0fdeca1fccacfeef7367fb021dadd5d7 272 SUPERFAMILY SSF52833 84 250 4.09E-32 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_083 0fdeca1fccacfeef7367fb021dadd5d7 272 Gene3D G3DSA:1.10.40.80 141 203 4.8E-44 T 13-10-2018 AMF_083 0fdeca1fccacfeef7367fb021dadd5d7 272 Gene3D G3DSA:3.40.30.10 86 245 4.8E-44 T 13-10-2018 AMF_904 3e16b15bfb976a6fd0cdd849050f13ab 126 SUPERFAMILY SSF52980 15 124 1.61E-19 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMF_904 3e16b15bfb976a6fd0cdd849050f13ab 126 Gene3D G3DSA:3.40.1350.10 18 126 1.0E-20 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AMF_904 3e16b15bfb976a6fd0cdd849050f13ab 126 Pfam PF02021 Uncharacterised protein family UPF0102 24 103 7.2E-13 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 AMF_911 b6a5a7adb04cc2de801cb6229aa4f707 239 SUPERFAMILY SSF52540 4 227 5.45E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_911 b6a5a7adb04cc2de801cb6229aa4f707 239 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_911 b6a5a7adb04cc2de801cb6229aa4f707 239 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 32 45 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMF_911 b6a5a7adb04cc2de801cb6229aa4f707 239 Gene3D G3DSA:3.40.50.300 3 238 8.0E-67 T 13-10-2018 AMF_911 b6a5a7adb04cc2de801cb6229aa4f707 239 SMART SM00382 28 213 1.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_911 b6a5a7adb04cc2de801cb6229aa4f707 239 Pfam PF00005 ABC transporter 19 164 9.4E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 SUPERFAMILY SSF52540 12 232 2.8E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 Pfam PF03143 Elongation factor Tu C-terminal domain 305 398 4.3E-30 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 Hamap MF_00118_B Elongation factor Tu [tuf]. 4 400 57.182 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 Gene3D G3DSA:3.40.50.300 7 209 3.7E-63 T 13-10-2018 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 PRINTS PR00315 GTP-binding elongation factor signature 17 30 3.9E-22 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 PRINTS PR00315 GTP-binding elongation factor signature 99 110 3.9E-22 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 PRINTS PR00315 GTP-binding elongation factor signature 136 145 3.9E-22 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 PRINTS PR00315 GTP-binding elongation factor signature 63 71 3.9E-22 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 PRINTS PR00315 GTP-binding elongation factor signature 83 93 3.9E-22 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 Pfam PF03144 Elongation factor Tu domain 2 231 299 1.4E-17 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 SUPERFAMILY SSF50465 309 400 7.67E-34 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 Gene3D G3DSA:2.40.30.10 307 399 4.8E-39 T 13-10-2018 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 11 400 1.0E-200 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 Gene3D G3DSA:2.40.30.10 213 306 1.6E-37 T 13-10-2018 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 SUPERFAMILY SSF50447 211 305 9.23E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 16 151 9.2E-13 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_698 f3087eedcd7b93c65eab0a3d30f471ca 400 Pfam PF00009 Elongation factor Tu GTP binding domain 13 184 5.5E-56 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_243 fc7b8c8248ffe08ee0385cae3df09b2f 392 Gene3D G3DSA:3.90.1150.10 19 382 5.3E-122 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMF_243 fc7b8c8248ffe08ee0385cae3df09b2f 392 Gene3D G3DSA:3.40.640.10 49 294 5.3E-122 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMF_243 fc7b8c8248ffe08ee0385cae3df09b2f 392 PIRSF PIRSF000521 9 175 3.0E-12 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_243 fc7b8c8248ffe08ee0385cae3df09b2f 392 PIRSF PIRSF000521 164 392 1.3E-37 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_243 fc7b8c8248ffe08ee0385cae3df09b2f 392 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 7 389 9.3E-125 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMF_243 fc7b8c8248ffe08ee0385cae3df09b2f 392 Pfam PF00202 Aminotransferase class-III 15 389 6.7E-106 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_243 fc7b8c8248ffe08ee0385cae3df09b2f 392 SUPERFAMILY SSF53383 7 391 8.78E-114 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMF_902 8cc531cda08633dbe5f63bdaf1773129 601 Gene3D G3DSA:3.90.1310.30 64 244 1.2E-28 T 13-10-2018 AMF_902 8cc531cda08633dbe5f63bdaf1773129 601 SUPERFAMILY SSF56519 63 248 1.14E-36 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AMF_902 8cc531cda08633dbe5f63bdaf1773129 601 Pfam PF00905 Penicillin binding protein transpeptidase domain 266 580 3.9E-53 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMF_902 8cc531cda08633dbe5f63bdaf1773129 601 Gene3D G3DSA:3.40.710.10 245 595 3.1E-80 T 13-10-2018 AMF_902 8cc531cda08633dbe5f63bdaf1773129 601 Pfam PF03717 Penicillin-binding Protein dimerisation domain 71 234 8.1E-24 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMF_902 8cc531cda08633dbe5f63bdaf1773129 601 SUPERFAMILY SSF56601 250 586 7.09E-79 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMF_902 8cc531cda08633dbe5f63bdaf1773129 601 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 26 586 1.4E-152 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMF_476 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 1303 1332 0.0025 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_476 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 863 895 3400.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_476 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 1901 1940 3.4 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_476 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 1868 1897 350.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_476 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 778 809 310.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_476 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 154 183 1100.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_476 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 1114 1143 1.3 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_476 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 537 566 380.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_476 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 1546 1578 44.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_476 f853e4b261e761c0d0346cce548561ca 3194 SUPERFAMILY SSF48403 12 259 4.78E-10 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_476 f853e4b261e761c0d0346cce548561ca 3194 SUPERFAMILY SSF48403 1112 1954 1.14E-19 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_476 f853e4b261e761c0d0346cce548561ca 3194 Gene3D G3DSA:1.25.40.20 4 288 2.4E-11 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_700 8f5e42e4fb5671f481fd913844cc1808 225 Hamap MF_00238 Cytidylate kinase [cmk]. 15 225 24.329 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMF_700 8f5e42e4fb5671f481fd913844cc1808 225 SUPERFAMILY SSF52540 14 224 1.28E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_700 8f5e42e4fb5671f481fd913844cc1808 225 TIGRFAM TIGR00017 cmk: cytidylate kinase 14 220 1.3E-44 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMF_700 8f5e42e4fb5671f481fd913844cc1808 225 Gene3D G3DSA:3.40.50.300 3 223 1.5E-50 T 13-10-2018 AMF_700 8f5e42e4fb5671f481fd913844cc1808 225 Pfam PF02224 Cytidylate kinase 17 222 2.4E-43 T 13-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMF_630 40255213fa599ea18ce45d369c42cb04 645 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 193 206 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 13 20 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 Gene3D G3DSA:3.30.420.40 11 378 1.9E-152 T 13-10-2018 AMF_630 40255213fa599ea18ce45d369c42cb04 645 Pfam PF00012 Hsp70 protein 10 604 8.4E-262 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 9 604 8.8E-281 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AMF_630 40255213fa599ea18ce45d369c42cb04 645 SUPERFAMILY SSF100934 506 605 4.9E-16 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 Gene3D G3DSA:3.90.640.10 226 313 1.9E-152 T 13-10-2018 AMF_630 40255213fa599ea18ce45d369c42cb04 645 PRINTS PR00301 70kDa heat shock protein signature 387 406 1.0E-78 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 PRINTS PR00301 70kDa heat shock protein signature 59 67 1.0E-78 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 PRINTS PR00301 70kDa heat shock protein signature 332 348 1.0E-78 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 PRINTS PR00301 70kDa heat shock protein signature 37 49 1.0E-78 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 PRINTS PR00301 70kDa heat shock protein signature 364 384 1.0E-78 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 PRINTS PR00301 70kDa heat shock protein signature 9 22 1.0E-78 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 PRINTS PR00301 70kDa heat shock protein signature 199 209 1.0E-78 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 PRINTS PR00301 70kDa heat shock protein signature 139 159 1.0E-78 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 PRINTS PR00301 70kDa heat shock protein signature 468 484 1.0E-78 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 SUPERFAMILY SSF53067 10 185 3.11E-60 T 13-10-2018 AMF_630 40255213fa599ea18ce45d369c42cb04 645 SUPERFAMILY SSF100920 383 539 1.02E-62 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 SUPERFAMILY SSF53067 188 381 2.59E-63 T 13-10-2018 AMF_630 40255213fa599ea18ce45d369c42cb04 645 Gene3D G3DSA:3.30.420.40 181 365 1.9E-152 T 13-10-2018 AMF_630 40255213fa599ea18ce45d369c42cb04 645 Gene3D G3DSA:2.60.34.10 382 522 1.2E-66 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 Gene3D G3DSA:1.20.1270.10 523 604 1.0E-23 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMF_630 40255213fa599ea18ce45d369c42cb04 645 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 7 637 36.282 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AMF_630 40255213fa599ea18ce45d369c42cb04 645 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 335 349 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMF_109 7048890c334bb45383fbc435022376d2 92 PIRSF PIRSF002599 7 92 2.3E-16 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMF_109 7048890c334bb45383fbc435022376d2 92 SMART SM00357 13 90 1.9E-16 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 AMF_109 7048890c334bb45383fbc435022376d2 92 Gene3D G3DSA:2.40.50.140 10 89 5.8E-22 T 13-10-2018 AMF_109 7048890c334bb45383fbc435022376d2 92 Pfam PF00313 'Cold-shock' DNA-binding domain 45 88 4.7E-10 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMF_109 7048890c334bb45383fbc435022376d2 92 Pfam PF00313 'Cold-shock' DNA-binding domain 13 34 5.6E-6 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMF_109 7048890c334bb45383fbc435022376d2 92 SUPERFAMILY SSF50249 11 89 1.71E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_395 b1138a0c5fcf710ab9ff1885f0489787 770 Pfam PF11670 Major surface protein 1a (MSP1a) 15 101 7.5E-34 T 13-10-2018 IPR021685 Major surface protein 1a (MSP1a) AMF_395 b1138a0c5fcf710ab9ff1885f0489787 770 Pfam PF11670 Major surface protein 1a (MSP1a) 71 159 1.8E-38 T 13-10-2018 IPR021685 Major surface protein 1a (MSP1a) AMF_395 b1138a0c5fcf710ab9ff1885f0489787 770 Pfam PF11670 Major surface protein 1a (MSP1a) 100 185 2.4E-38 T 13-10-2018 IPR021685 Major surface protein 1a (MSP1a) AMF_395 b1138a0c5fcf710ab9ff1885f0489787 770 Pfam PF11670 Major surface protein 1a (MSP1a) 158 296 3.1E-82 T 13-10-2018 IPR021685 Major surface protein 1a (MSP1a) AMF_393 321306f364badba160a2a1c5e8f96a91 599 Pfam PF03144 Elongation factor Tu domain 2 208 278 9.8E-8 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMF_393 321306f364badba160a2a1c5e8f96a91 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 177 6.6E-17 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_393 321306f364badba160a2a1c5e8f96a91 599 Gene3D G3DSA:2.40.30.10 189 287 1.3E-31 T 13-10-2018 AMF_393 321306f364badba160a2a1c5e8f96a91 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 599 275.634 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 AMF_393 321306f364badba160a2a1c5e8f96a91 599 Gene3D G3DSA:3.30.70.3380 371 480 2.3E-37 T 13-10-2018 AMF_393 321306f364badba160a2a1c5e8f96a91 599 SUPERFAMILY SSF54980 296 373 1.62E-17 T 13-10-2018 IPR035647 EF-G domain III/V-like AMF_393 321306f364badba160a2a1c5e8f96a91 599 Pfam PF06421 GTP-binding protein LepA C-terminus 490 596 2.9E-48 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal AMF_393 321306f364badba160a2a1c5e8f96a91 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site AMF_393 321306f364badba160a2a1c5e8f96a91 599 SUPERFAMILY SSF54980 402 496 1.06E-22 T 13-10-2018 IPR035647 EF-G domain III/V-like AMF_393 321306f364badba160a2a1c5e8f96a91 599 Gene3D G3DSA:3.30.70.870 289 370 1.4E-33 T 13-10-2018 AMF_393 321306f364badba160a2a1c5e8f96a91 599 SUPERFAMILY SSF52540 5 235 3.64E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_393 321306f364badba160a2a1c5e8f96a91 599 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 4.7E-49 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_393 321306f364badba160a2a1c5e8f96a91 599 Gene3D G3DSA:3.40.50.300 4 188 5.7E-68 T 13-10-2018 AMF_393 321306f364badba160a2a1c5e8f96a91 599 Pfam PF14492 Elongation Factor G, domain II 296 368 2.8E-6 T 13-10-2018 AMF_393 321306f364badba160a2a1c5e8f96a91 599 TIGRFAM TIGR01393 lepA: elongation factor 4 6 597 1.2E-275 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 AMF_393 321306f364badba160a2a1c5e8f96a91 599 Pfam PF00679 Elongation factor G C-terminus 403 486 1.7E-18 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AMF_393 321306f364badba160a2a1c5e8f96a91 599 SMART SM00838 404 487 0.0031 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like AMF_393 321306f364badba160a2a1c5e8f96a91 599 Gene3D G3DSA:3.30.70.2570 482 556 4.4E-33 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily AMF_393 321306f364badba160a2a1c5e8f96a91 599 PRINTS PR00315 GTP-binding elongation factor signature 129 138 8.3E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_393 321306f364badba160a2a1c5e8f96a91 599 PRINTS PR00315 GTP-binding elongation factor signature 77 87 8.3E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_393 321306f364badba160a2a1c5e8f96a91 599 PRINTS PR00315 GTP-binding elongation factor signature 93 104 8.3E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_393 321306f364badba160a2a1c5e8f96a91 599 PRINTS PR00315 GTP-binding elongation factor signature 52 60 8.3E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_393 321306f364badba160a2a1c5e8f96a91 599 PRINTS PR00315 GTP-binding elongation factor signature 9 22 8.3E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_919 82444c9836bccd9602924817ad74fd73 398 SUPERFAMILY SSF56925 31 354 6.8E-10 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_919 82444c9836bccd9602924817ad74fd73 398 Gene3D G3DSA:2.40.160.20 183 370 3.7E-10 T 13-10-2018 AMF_919 82444c9836bccd9602924817ad74fd73 398 Pfam PF01617 Surface antigen 31 396 1.4E-30 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 SUPERFAMILY SSF54752 277 333 2.49E-19 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 Gene3D G3DSA:3.30.250.10 277 349 2.7E-23 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 Gene3D G3DSA:3.40.50.300 35 276 1.6E-81 T 13-10-2018 AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 SUPERFAMILY SSF52540 12 276 2.87E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 ProSitePatterns PS00321 recA signature. 222 230 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 PRINTS PR00142 RecA protein signature 102 131 3.5E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 PRINTS PR00142 RecA protein signature 252 281 3.5E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 PRINTS PR00142 RecA protein signature 219 247 3.5E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 PRINTS PR00142 RecA protein signature 136 165 3.5E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 PRINTS PR00142 RecA protein signature 174 203 3.5E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 PRINTS PR00142 RecA protein signature 306 323 3.5E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 Hamap MF_00268 Protein RecA [recA]. 14 338 49.85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 Pfam PF00154 recA bacterial DNA recombination protein 16 277 4.6E-137 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 SMART SM00382 66 237 2.9E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_061 2ae415d3b3e0153048f5a5498d4d5209 359 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 13 332 7.6E-165 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 ProSitePatterns PS01134 FtsZ protein signature 1. 55 89 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 22 344 1.2E-120 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 Pfam PF12327 FtsZ family, C-terminal domain 233 328 1.9E-37 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 Gene3D G3DSA:3.30.1330.20 232 343 6.1E-37 T 13-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 PRINTS PR00423 Cell division protein FtsZ signature 200 222 1.0E-50 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 PRINTS PR00423 Cell division protein FtsZ signature 109 129 1.0E-50 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 PRINTS PR00423 Cell division protein FtsZ signature 137 158 1.0E-50 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 PRINTS PR00423 Cell division protein FtsZ signature 223 244 1.0E-50 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 Gene3D G3DSA:3.40.50.1440 15 231 1.7E-77 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 SMART SM00865 218 336 1.4E-58 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 SUPERFAMILY SSF55307 215 329 2.06E-41 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 SMART SM00864 24 216 2.2E-107 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 24 185 4.2E-42 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 20 364 36.362 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 SUPERFAMILY SSF52490 23 219 5.36E-69 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMF_952 ab6d6a234f1b47abe26e46698c0a8926 417 ProSitePatterns PS01135 FtsZ protein signature 2. 108 129 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMF_340 15f0d731f67dd5453068acc25999996f 280 Gene3D G3DSA:1.20.120.1760 11 170 2.2E-15 T 13-10-2018 AMF_340 15f0d731f67dd5453068acc25999996f 280 Pfam PF01066 CDP-alcohol phosphatidyltransferase 22 85 2.2E-14 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMF_340 15f0d731f67dd5453068acc25999996f 280 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 27 198 6.6E-34 T 13-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 AMF_340 15f0d731f67dd5453068acc25999996f 280 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 63 85 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMF_340 15f0d731f67dd5453068acc25999996f 280 Pfam PF08009 CDP-alcohol phosphatidyltransferase 2 211 247 1.2E-8 T 13-10-2018 IPR012616 CDP-alcohol phosphatidyltransferase, C-terminal AMF_096 e9b7943dacb1481715d8d9fd205c3e03 236 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 12 236 34.934 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMF_096 e9b7943dacb1481715d8d9fd205c3e03 236 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 12 235 3.1E-74 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMF_096 e9b7943dacb1481715d8d9fd205c3e03 236 SUPERFAMILY SSF64005 10 230 3.4E-74 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AMF_096 e9b7943dacb1481715d8d9fd205c3e03 236 Pfam PF01255 Putative undecaprenyl diphosphate synthase 19 235 1.2E-71 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMF_096 e9b7943dacb1481715d8d9fd205c3e03 236 Gene3D G3DSA:3.40.1180.10 3 236 5.5E-83 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AMF_580 ce7c8d71861dc7935465672e215c392f 406 Gene3D G3DSA:1.20.810.10 5 405 3.8E-166 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 AMF_580 ce7c8d71861dc7935465672e215c392f 406 Pfam PF00033 Cytochrome b/b6/petB 32 218 7.3E-80 T 13-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AMF_580 ce7c8d71861dc7935465672e215c392f 406 PIRSF PIRSF038885 6 406 9.3E-192 T 13-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 AMF_580 ce7c8d71861dc7935465672e215c392f 406 SUPERFAMILY SSF81342 16 276 3.77E-109 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMF_580 ce7c8d71861dc7935465672e215c392f 406 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 274 375 1.2E-40 T 13-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AMF_580 ce7c8d71861dc7935465672e215c392f 406 SUPERFAMILY SSF81648 277 395 2.4E-41 T 13-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 68 78 5.0E-18 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 115 123 5.0E-18 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 154 178 5.0E-18 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 11 33 5.0E-18 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 283 301 5.0E-18 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 Gene3D G3DSA:3.50.50.60 11 315 1.6E-86 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 158 176 5.6E-13 T 13-10-2018 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 114 132 5.6E-13 T 13-10-2018 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 273 295 5.6E-13 T 13-10-2018 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 5.6E-13 T 13-10-2018 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 Hamap MF_01685 Ferredoxin--NADP reductase. 9 336 39.78 T 13-10-2018 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 304 1.8E-20 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 SUPERFAMILY SSF51905 11 315 1.51E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_461 ecac011a612df7a9d2da8ebe89b299b1 340 Gene3D G3DSA:3.50.50.60 130 253 1.6E-86 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_586 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Gene3D G3DSA:3.30.479.20 56 150 3.2E-15 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMF_586 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Hamap MF_00050 Elongation factor Ts [tsf]. 1 291 54.191 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMF_586 3e4754c0dddd881c777f3d7b5f5c5ce9 291 SUPERFAMILY SSF54713 56 147 1.96E-13 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMF_586 3e4754c0dddd881c777f3d7b5f5c5ce9 291 SUPERFAMILY SSF46934 4 54 3.32E-15 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 AMF_586 3e4754c0dddd881c777f3d7b5f5c5ce9 291 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMF_586 3e4754c0dddd881c777f3d7b5f5c5ce9 291 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 2 291 7.1E-71 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMF_586 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Gene3D G3DSA:1.10.286.20 206 250 2.7E-38 T 13-10-2018 AMF_586 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Pfam PF00889 Elongation factor TS 70 291 6.6E-55 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 AMF_586 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Gene3D G3DSA:3.30.479.20 152 291 2.7E-38 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMF_586 3e4754c0dddd881c777f3d7b5f5c5ce9 291 SUPERFAMILY SSF54713 152 291 9.03E-34 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMF_586 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Gene3D G3DSA:1.10.8.10 4 55 1.8E-20 T 13-10-2018 AMF_582 0b82b7d5de4cc2b1965a662f012899f0 121 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 41 74 8.8E-11 T 13-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 AMF_582 0b82b7d5de4cc2b1965a662f012899f0 121 SUPERFAMILY SSF50022 63 117 1.61E-9 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMF_582 0b82b7d5de4cc2b1965a662f012899f0 121 Gene3D G3DSA:2.102.10.10 75 121 3.4E-13 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMF_582 0b82b7d5de4cc2b1965a662f012899f0 121 Gene3D G3DSA:1.20.5.510 39 74 1.2E-6 T 13-10-2018 AMF_854 e61ba53a7366aa4aa9028bd029387394 305 Gene3D G3DSA:3.40.50.300 103 292 1.5E-100 T 13-10-2018 AMF_854 e61ba53a7366aa4aa9028bd029387394 305 SMART SM00962 103 304 9.6E-111 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMF_854 e61ba53a7366aa4aa9028bd029387394 305 SUPERFAMILY SSF52540 101 303 1.31E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_854 e61ba53a7366aa4aa9028bd029387394 305 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 35 302 2.3E-92 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMF_854 e61ba53a7366aa4aa9028bd029387394 305 Pfam PF00448 SRP54-type protein, GTPase domain 103 303 8.8E-74 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMF_854 e61ba53a7366aa4aa9028bd029387394 305 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 35 304 52.693 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMF_854 e61ba53a7366aa4aa9028bd029387394 305 Gene3D G3DSA:1.20.120.140 10 302 1.5E-100 T 13-10-2018 AMF_854 e61ba53a7366aa4aa9028bd029387394 305 SMART SM00963 11 90 0.0026 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMF_854 e61ba53a7366aa4aa9028bd029387394 305 SMART SM00382 102 239 5.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_854 e61ba53a7366aa4aa9028bd029387394 305 SUPERFAMILY SSF47364 6 70 1.79E-9 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 AMF_235 a457ef988247c278266b0acd2cf051d2 279 Pfam PF03618 Kinase/pyrophosphorylase 9 264 1.1E-84 T 13-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 AMF_235 a457ef988247c278266b0acd2cf051d2 279 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 7 269 54.231 T 13-10-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein AMF_934 ed5ae08880719a5e7edb22f6a414be59 290 Pfam PF03167 Uracil DNA glycosylase superfamily 124 275 3.7E-39 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMF_934 ed5ae08880719a5e7edb22f6a414be59 290 SMART SM00986 123 275 9.4E-37 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMF_934 ed5ae08880719a5e7edb22f6a414be59 290 SMART SM00987 123 275 9.4E-37 T 13-10-2018 AMF_934 ed5ae08880719a5e7edb22f6a414be59 290 SUPERFAMILY SSF52141 93 282 1.6E-59 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMF_934 ed5ae08880719a5e7edb22f6a414be59 290 Gene3D G3DSA:3.40.470.10 98 289 2.7E-60 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMF_934 ed5ae08880719a5e7edb22f6a414be59 290 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 110 280 1.0E-62 T 13-10-2018 IPR005273 Uracil-DNA glycosylase family 4 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 155 252 4.3E-19 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 SUPERFAMILY SSF53738 3 179 6.67E-39 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 Gene3D G3DSA:3.40.120.10 255 336 6.6E-61 T 13-10-2018 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 SUPERFAMILY SSF53738 153 254 3.34E-30 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 Gene3D G3DSA:3.30.310.50 374 441 1.2E-8 T 13-10-2018 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 Gene3D G3DSA:3.40.120.10 172 359 6.6E-61 T 13-10-2018 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 4.2E-11 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 232 247 4.2E-11 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 172 191 4.2E-11 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 441 39.419 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 SUPERFAMILY SSF55957 401 439 4.97E-7 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 Gene3D G3DSA:3.40.120.10 1 151 1.8E-35 T 13-10-2018 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 4 435 8.3E-145 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 SUPERFAMILY SSF53738 240 370 1.22E-25 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 400 438 9.4E-6 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 256 362 4.1E-24 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_721 37c5c17ac24314b5c890b2b364110ff9 452 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 132 1.7E-34 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_821 51278942519fc7ca4e845f87040075dc 437 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 207 434 1.5E-82 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AMF_821 51278942519fc7ca4e845f87040075dc 437 SUPERFAMILY SSF52777 207 436 1.11E-87 T 13-10-2018 AMF_821 51278942519fc7ca4e845f87040075dc 437 SUPERFAMILY SSF51230 29 118 1.07E-16 T 13-10-2018 IPR011053 Single hybrid motif AMF_821 51278942519fc7ca4e845f87040075dc 437 Pfam PF00364 Biotin-requiring enzyme 37 101 2.3E-14 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AMF_821 51278942519fc7ca4e845f87040075dc 437 Gene3D G3DSA:2.40.50.100 27 105 6.8E-17 T 13-10-2018 AMF_821 51278942519fc7ca4e845f87040075dc 437 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 28 436 1.2E-144 T 13-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMF_821 51278942519fc7ca4e845f87040075dc 437 Gene3D G3DSA:3.30.559.10 207 437 1.1E-94 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMF_821 51278942519fc7ca4e845f87040075dc 437 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 52 81 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMF_616 b4e1df1245354de714cead88a6239509 321 Pfam PF01479 S4 domain 10 55 5.2E-6 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_616 b4e1df1245354de714cead88a6239509 321 SMART SM00363 10 73 8.2E-4 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_616 b4e1df1245354de714cead88a6239509 321 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 6 309 6.7E-79 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_616 b4e1df1245354de714cead88a6239509 321 SUPERFAMILY SSF55174 10 58 3.7E-9 T 13-10-2018 AMF_616 b4e1df1245354de714cead88a6239509 321 Pfam PF00849 RNA pseudouridylate synthase 84 241 2.4E-29 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_616 b4e1df1245354de714cead88a6239509 321 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 131 145 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_616 b4e1df1245354de714cead88a6239509 321 Gene3D G3DSA:3.10.290.10 1 64 1.2E-12 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMF_616 b4e1df1245354de714cead88a6239509 321 SUPERFAMILY SSF55120 72 310 1.54E-66 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_616 b4e1df1245354de714cead88a6239509 321 Gene3D G3DSA:3.30.2350.10 76 313 5.7E-69 T 13-10-2018 AMF_541 56a16b705876490d5517597e41447dda 117 Pfam PF02033 Ribosome-binding factor A 11 112 2.8E-21 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMF_541 56a16b705876490d5517597e41447dda 117 SUPERFAMILY SSF89919 9 114 1.96E-23 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily AMF_541 56a16b705876490d5517597e41447dda 117 Gene3D G3DSA:3.30.300.20 8 117 1.6E-21 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AMF_541 56a16b705876490d5517597e41447dda 117 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 10 113 23.457 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMF_541 56a16b705876490d5517597e41447dda 117 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 15 100 5.0E-43 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMF_541 56a16b705876490d5517597e41447dda 117 ProSitePatterns PS01319 Ribosome-binding factor A signature. 79 100 - T 13-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 AMF_541 56a16b705876490d5517597e41447dda 117 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 11 114 4.3E-19 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMF_817 cd8a37fdde56f1a75258a05093c361de 303 Gene3D G3DSA:3.40.50.620 4 182 5.8E-53 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_817 cd8a37fdde56f1a75258a05093c361de 303 SMART SM00904 178 302 3.2E-48 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AMF_817 cd8a37fdde56f1a75258a05093c361de 303 PIRSF PIRSF004491 2 303 1.3E-97 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMF_817 cd8a37fdde56f1a75258a05093c361de 303 SUPERFAMILY SSF52374 12 170 2.13E-31 T 13-10-2018 AMF_817 cd8a37fdde56f1a75258a05093c361de 303 SUPERFAMILY SSF82114 170 301 8.94E-41 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AMF_817 cd8a37fdde56f1a75258a05093c361de 303 Pfam PF01687 Riboflavin kinase 179 301 4.7E-35 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AMF_817 cd8a37fdde56f1a75258a05093c361de 303 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 14 300 5.5E-76 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMF_817 cd8a37fdde56f1a75258a05093c361de 303 Pfam PF06574 FAD synthetase 10 162 8.5E-44 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMF_817 cd8a37fdde56f1a75258a05093c361de 303 Gene3D G3DSA:2.40.30.30 183 303 4.1E-38 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AMF_608 ba17739baac9b035979682db162ee7c0 223 PRINTS PR01703 Manganese superoxide dismutase signature 89 102 9.7E-15 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_608 ba17739baac9b035979682db162ee7c0 223 PRINTS PR01703 Manganese superoxide dismutase signature 181 193 9.7E-15 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_608 ba17739baac9b035979682db162ee7c0 223 PRINTS PR01703 Manganese superoxide dismutase signature 142 150 9.7E-15 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_608 ba17739baac9b035979682db162ee7c0 223 PRINTS PR01703 Manganese superoxide dismutase signature 43 56 9.7E-15 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_608 ba17739baac9b035979682db162ee7c0 223 SUPERFAMILY SSF46609 11 106 6.81E-27 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_608 ba17739baac9b035979682db162ee7c0 223 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 113 216 2.2E-33 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_608 ba17739baac9b035979682db162ee7c0 223 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 21 106 6.6E-24 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_608 ba17739baac9b035979682db162ee7c0 223 Gene3D G3DSA:1.10.287.990 38 105 1.7E-18 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_608 ba17739baac9b035979682db162ee7c0 223 SUPERFAMILY SSF54719 108 220 2.1E-42 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_608 ba17739baac9b035979682db162ee7c0 223 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 183 190 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_608 ba17739baac9b035979682db162ee7c0 223 Gene3D G3DSA:2.40.500.20 110 223 2.0E-39 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_608 ba17739baac9b035979682db162ee7c0 223 PIRSF PIRSF000349 5 223 7.1E-76 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMF_673 c0976746cc9ef9c553bb5fd14e26a8d4 113 PIRSF PIRSF002131 1 113 2.5E-42 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMF_673 c0976746cc9ef9c553bb5fd14e26a8d4 113 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 1 113 27.274 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMF_673 c0976746cc9ef9c553bb5fd14e26a8d4 113 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 2 110 3.8E-47 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_673 c0976746cc9ef9c553bb5fd14e26a8d4 113 Pfam PF00411 Ribosomal protein S11 2 112 3.4E-37 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMF_673 c0976746cc9ef9c553bb5fd14e26a8d4 113 Gene3D G3DSA:3.30.420.80 1 113 1.2E-41 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 AMF_673 c0976746cc9ef9c553bb5fd14e26a8d4 113 SUPERFAMILY SSF53137 2 113 1.24E-37 T 13-10-2018 AMF_384 2eaa77618ede441a0e8df960df90c584 197 SUPERFAMILY SSF53067 3 104 2.75E-17 T 13-10-2018 AMF_384 2eaa77618ede441a0e8df960df90c584 197 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 140 4.1E-29 T 13-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 AMF_384 2eaa77618ede441a0e8df960df90c584 197 Pfam PF00814 Glycoprotease family 33 102 9.5E-11 T 13-10-2018 IPR000905 Gcp-like domain AMF_384 2eaa77618ede441a0e8df960df90c584 197 Gene3D G3DSA:3.30.420.40 1 120 6.9E-22 T 13-10-2018 AMF_124 5a2a8c7fd1e3c97b6d0d06d88d73f219 582 Gene3D G3DSA:1.20.1560.10 3 316 1.5E-53 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMF_124 5a2a8c7fd1e3c97b6d0d06d88d73f219 582 Pfam PF00664 ABC transporter transmembrane region 21 285 4.8E-35 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMF_124 5a2a8c7fd1e3c97b6d0d06d88d73f219 582 Pfam PF00005 ABC transporter 355 505 3.7E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_124 5a2a8c7fd1e3c97b6d0d06d88d73f219 582 SMART SM00382 364 551 4.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_124 5a2a8c7fd1e3c97b6d0d06d88d73f219 582 SUPERFAMILY SSF90123 11 315 1.83E-53 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMF_124 5a2a8c7fd1e3c97b6d0d06d88d73f219 582 Gene3D G3DSA:3.40.50.300 327 580 7.0E-89 T 13-10-2018 AMF_124 5a2a8c7fd1e3c97b6d0d06d88d73f219 582 SUPERFAMILY SSF52540 328 577 3.63E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 251 260 8.5E-5 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 8.5E-5 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 132 143 8.5E-5 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 29 143 2.0E-16 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00102 Ornithine carbamoyltransferase signature 277 288 4.7E-7 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00102 Ornithine carbamoyltransferase signature 121 135 4.7E-7 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 4.7E-7 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 4.7E-7 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00102 Ornithine carbamoyltransferase signature 219 229 4.7E-7 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 153 294 2.0E-26 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 Gene3D G3DSA:3.40.50.1370 135 285 1.2E-43 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 Gene3D G3DSA:3.40.50.1370 29 293 1.2E-43 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMF_916 4597c68b74c7faefa1831d2c98ada8ab 302 SUPERFAMILY SSF53671 11 298 2.49E-44 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 Gene3D G3DSA:1.10.10.10 230 302 1.7E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 Pfam PF04545 Sigma-70, region 4 245 295 3.1E-13 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 66 296 5.1E-30 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 PRINTS PR00046 Major sigma-70 factor signature 283 294 2.3E-19 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 PRINTS PR00046 Major sigma-70 factor signature 249 261 2.3E-19 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 PRINTS PR00046 Major sigma-70 factor signature 93 106 2.3E-19 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 PRINTS PR00046 Major sigma-70 factor signature 117 125 2.3E-19 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 PRINTS PR00046 Major sigma-70 factor signature 268 283 2.3E-19 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 Pfam PF04542 Sigma-70 region 2 69 137 7.0E-15 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 SUPERFAMILY SSF88659 206 303 1.48E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 SUPERFAMILY SSF88946 27 137 9.58E-35 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMF_473 8e410b397b67a5cf7ee7ca06b7e25d03 307 Gene3D G3DSA:1.20.120.1810 30 136 2.9E-28 T 13-10-2018 AMF_002 8d9920ffac0d5190d709a9d1a8f6e461 200 SUPERFAMILY SSF52833 25 151 2.62E-9 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_002 8d9920ffac0d5190d709a9d1a8f6e461 200 Gene3D G3DSA:3.40.30.10 64 185 2.6E-7 T 13-10-2018 AMF_629 5327ce487cbf2443902f934c52f1706d 158 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 15 144 1.1E-20 T 13-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 AMF_629 5327ce487cbf2443902f934c52f1706d 158 SUPERFAMILY SSF55961 8 152 5.09E-26 T 13-10-2018 AMF_629 5327ce487cbf2443902f934c52f1706d 158 Gene3D G3DSA:3.30.530.20 6 153 7.3E-32 T 13-10-2018 IPR023393 START-like domain superfamily AMF_462 ad10bde983e3362512ccba836adf531d 444 Gene3D G3DSA:3.30.2290.10 2 221 1.3E-51 T 13-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal AMF_462 ad10bde983e3362512ccba836adf531d 444 Pfam PF01523 Putative modulator of DNA gyrase 21 312 4.6E-49 T 13-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AMF_462 ad10bde983e3362512ccba836adf531d 444 SUPERFAMILY SSF111283 1 441 1.1E-109 T 13-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 AMF_907 9fd8f0b07bc37fbe03fa033bb45af7d9 497 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 288 303 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMF_907 9fd8f0b07bc37fbe03fa033bb45af7d9 497 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 36 495 1.7E-176 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_907 9fd8f0b07bc37fbe03fa033bb45af7d9 497 Pfam PF00120 Glutamine synthetase, catalytic domain 134 494 3.3E-122 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_907 9fd8f0b07bc37fbe03fa033bb45af7d9 497 Gene3D G3DSA:3.10.20.70 33 135 3.4E-36 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_907 9fd8f0b07bc37fbe03fa033bb45af7d9 497 SMART SM01230 133 407 5.8E-125 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_907 9fd8f0b07bc37fbe03fa033bb45af7d9 497 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 46 126 1.1E-28 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMF_907 9fd8f0b07bc37fbe03fa033bb45af7d9 497 SUPERFAMILY SSF55931 134 495 2.16E-119 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMF_907 9fd8f0b07bc37fbe03fa033bb45af7d9 497 Gene3D G3DSA:3.30.590.10 136 485 4.4E-127 T 13-10-2018 AMF_907 9fd8f0b07bc37fbe03fa033bb45af7d9 497 SUPERFAMILY SSF54368 34 130 1.83E-32 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SUPERFAMILY SSF48403 117 283 7.15E-16 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SUPERFAMILY SSF48403 268 490 1.62E-10 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 Gene3D G3DSA:1.25.40.20 76 297 3.6E-19 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 Gene3D G3DSA:1.25.40.20 744 910 5.9E-20 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 Pfam PF12796 Ankyrin repeats (3 copies) 115 162 2.5E-6 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 Pfam PF12796 Ankyrin repeats (3 copies) 668 761 2.8E-7 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 PRINTS PR01415 Ankyrin repeat signature 468 483 6.7E-5 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 PRINTS PR01415 Ankyrin repeat signature 709 723 6.7E-5 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 Gene3D G3DSA:1.25.40.20 501 739 8.6E-16 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 Gene3D G3DSA:1.25.40.20 298 499 7.0E-11 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SUPERFAMILY SSF48403 116 887 1.66E-33 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 846 875 200.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 767 798 170.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 356 385 4100.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 691 722 0.049 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 467 496 1.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 118 147 0.0019 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 151 185 3200.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 191 219 310.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 802 832 690.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 726 763 580.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 271 301 4300.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_526 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 223 253 1400.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_929 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 153 174 1.2E-51 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_929 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 31 50 1.2E-51 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_929 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 403 420 1.2E-51 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_929 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 351 370 1.2E-51 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_929 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 129 153 1.2E-51 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_929 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 253 279 1.2E-51 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_929 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 50 66 1.2E-51 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_929 50cb5c64810eb4cf438edff45a75ead8 501 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 3 494 1.2E-102 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_929 50cb5c64810eb4cf438edff45a75ead8 501 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 1 461 16.611 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_929 50cb5c64810eb4cf438edff45a75ead8 501 Pfam PF03023 MviN-like protein 26 471 2.9E-93 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_929 50cb5c64810eb4cf438edff45a75ead8 501 PIRSF PIRSF002869 1 500 8.1E-127 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_628 5202d2aeea12d25c49e9da808904ae1d 520 Pfam PF00361 Proton-conducting membrane transporter 95 336 1.1E-10 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_280 8cca80bc13f4862067a2b55f7f857861 613 SUPERFAMILY SSF82771 30 113 1.01E-19 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMF_280 8cca80bc13f4862067a2b55f7f857861 613 SMART SM00278 554 573 220.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMF_280 8cca80bc13f4862067a2b55f7f857861 613 SMART SM00278 586 605 0.14 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMF_280 8cca80bc13f4862067a2b55f7f857861 613 Pfam PF14520 Helix-hairpin-helix domain 556 607 4.5E-9 T 13-10-2018 AMF_280 8cca80bc13f4862067a2b55f7f857861 613 Hamap MF_00203 UvrABC system protein C [uvrC]. 16 605 24.606 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMF_280 8cca80bc13f4862067a2b55f7f857861 613 SMART SM00465 30 111 1.3E-19 T 13-10-2018 IPR000305 GIY-YIG endonuclease AMF_280 8cca80bc13f4862067a2b55f7f857861 613 Gene3D G3DSA:3.40.1440.10 16 115 3.8E-27 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMF_280 8cca80bc13f4862067a2b55f7f857861 613 Pfam PF01541 GIY-YIG catalytic domain 32 106 1.8E-8 T 13-10-2018 IPR000305 GIY-YIG endonuclease AMF_280 8cca80bc13f4862067a2b55f7f857861 613 Gene3D G3DSA:3.30.420.340 385 550 3.0E-46 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily AMF_280 8cca80bc13f4862067a2b55f7f857861 613 Gene3D G3DSA:1.10.150.20 554 608 7.9E-19 T 13-10-2018 AMF_280 8cca80bc13f4862067a2b55f7f857861 613 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 392 540 7.6E-43 T 13-10-2018 IPR001162 UvrC family homology region AMF_280 8cca80bc13f4862067a2b55f7f857861 613 SUPERFAMILY SSF47781 519 608 2.45E-18 T 13-10-2018 IPR010994 RuvA domain 2-like AMF_280 8cca80bc13f4862067a2b55f7f857861 613 Pfam PF02151 UvrB/uvrC motif 218 251 5.3E-6 T 13-10-2018 IPR001943 UVR domain GO:0005515 AMF_280 8cca80bc13f4862067a2b55f7f857861 613 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 21 586 9.4E-145 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMF_280 8cca80bc13f4862067a2b55f7f857861 613 SUPERFAMILY SSF46600 205 254 1.06E-9 T 13-10-2018 IPR036876 UVR domain superfamily AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 Gene3D G3DSA:1.10.40.30 354 432 9.5E-22 T 13-10-2018 AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 Gene3D G3DSA:1.20.200.10 98 353 1.8E-83 T 13-10-2018 AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 SMART SM00998 354 433 1.4E-25 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 Pfam PF10397 Adenylosuccinate lyase C-terminus 355 430 2.2E-19 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 SUPERFAMILY SSF48557 7 432 1.29E-116 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 Pfam PF00206 Lyase 12 289 2.2E-45 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 ProSitePatterns PS00163 Fumarate lyases signature. 266 275 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 Gene3D G3DSA:1.10.275.10 3 97 5.9E-27 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 6 431 7.4E-137 T 13-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 PRINTS PR00145 Argininosuccinate lyase family signature 92 114 5.7E-7 T 13-10-2018 AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 PRINTS PR00145 Argininosuccinate lyase family signature 266 282 5.7E-7 T 13-10-2018 AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 PRINTS PR00145 Argininosuccinate lyase family signature 221 245 5.7E-7 T 13-10-2018 AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 PRINTS PR00145 Argininosuccinate lyase family signature 133 153 5.7E-7 T 13-10-2018 AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 PRINTS PR00149 Fumarate lyase superfamily signature 221 248 1.5E-23 T 13-10-2018 IPR000362 Fumarate lyase family AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 1.5E-23 T 13-10-2018 IPR000362 Fumarate lyase family AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 PRINTS PR00149 Fumarate lyase superfamily signature 266 282 1.5E-23 T 13-10-2018 IPR000362 Fumarate lyase family AMF_279 ffa8fb8ec416e38fd9254fb1f847f63a 438 PRINTS PR00149 Fumarate lyase superfamily signature 93 111 1.5E-23 T 13-10-2018 IPR000362 Fumarate lyase family AMF_130 57b40184194cc83057b443a72422ac32 190 SUPERFAMILY SSF50249 1 64 4.23E-9 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_130 57b40184194cc83057b443a72422ac32 190 Gene3D G3DSA:1.10.150.20 68 142 3.4E-15 T 13-10-2018 AMF_130 57b40184194cc83057b443a72422ac32 190 SUPERFAMILY SSF46929 148 189 2.09E-5 T 13-10-2018 IPR036267 RuvA, C-terminal domain superfamily AMF_130 57b40184194cc83057b443a72422ac32 190 Pfam PF14520 Helix-hairpin-helix domain 74 128 1.4E-9 T 13-10-2018 AMF_130 57b40184194cc83057b443a72422ac32 190 Gene3D G3DSA:1.10.8.10 143 188 4.8E-5 T 13-10-2018 AMF_130 57b40184194cc83057b443a72422ac32 190 SUPERFAMILY SSF47781 67 138 2.17E-15 T 13-10-2018 IPR010994 RuvA domain 2-like AMF_130 57b40184194cc83057b443a72422ac32 190 Pfam PF07499 RuvA, C-terminal domain 148 189 6.2E-8 T 13-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AMF_130 57b40184194cc83057b443a72422ac32 190 Gene3D G3DSA:2.40.50.140 1 66 3.7E-13 T 13-10-2018 AMF_130 57b40184194cc83057b443a72422ac32 190 Pfam PF01330 RuvA N terminal domain 1 63 2.9E-14 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMF_130 57b40184194cc83057b443a72422ac32 190 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 189 21.249 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMF_426 11951b35b8a4b27bfd6e1c10ca4698bc 234 Gene3D G3DSA:3.40.50.150 9 234 4.8E-67 T 13-10-2018 AMF_426 11951b35b8a4b27bfd6e1c10ca4698bc 234 SUPERFAMILY SSF53335 12 233 6.69E-43 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_426 11951b35b8a4b27bfd6e1c10ca4698bc 234 Pfam PF13489 Methyltransferase domain 47 198 5.4E-24 T 13-10-2018 AMF_426 11951b35b8a4b27bfd6e1c10ca4698bc 234 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 9 228 1.4E-77 T 13-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AMF_426 11951b35b8a4b27bfd6e1c10ca4698bc 234 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 9 234 35.478 T 13-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AMF_312 e83560371670421630af76c443adaf24 485 SUPERFAMILY SSF89095 305 409 5.36E-31 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 AMF_312 e83560371670421630af76c443adaf24 485 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 14 482 2.0E-161 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMF_312 e83560371670421630af76c443adaf24 485 SMART SM00845 336 482 1.8E-72 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AMF_312 e83560371670421630af76c443adaf24 485 Pfam PF02637 GatB domain 337 482 2.8E-47 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AMF_312 e83560371670421630af76c443adaf24 485 Gene3D G3DSA:1.10.10.410 422 484 3.8E-22 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AMF_312 e83560371670421630af76c443adaf24 485 SUPERFAMILY SSF55931 16 304 7.85E-113 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMF_312 e83560371670421630af76c443adaf24 485 Pfam PF02934 GatB/GatE catalytic domain 17 296 2.7E-109 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 AMF_312 e83560371670421630af76c443adaf24 485 Gene3D G3DSA:1.10.150.380 305 421 1.0E-35 T 13-10-2018 AMF_312 e83560371670421630af76c443adaf24 485 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 152 166 - T 13-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 AMF_312 e83560371670421630af76c443adaf24 485 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 14 483 35.313 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMF_622 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Pfam PF16188 C-terminal region of peptidase_M24 511 570 3.3E-19 T 13-10-2018 IPR032416 Peptidase M24, C-terminal domain AMF_622 0c21334a8713c14eb5ee1c5b6a62e9e4 570 SUPERFAMILY SSF53092 3 127 1.38E-9 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMF_622 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Gene3D G3DSA:3.40.350.10 2 138 7.5E-24 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMF_622 0c21334a8713c14eb5ee1c5b6a62e9e4 570 SUPERFAMILY SSF55920 286 536 1.03E-58 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like AMF_622 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Pfam PF00557 Metallopeptidase family M24 293 505 1.1E-45 T 13-10-2018 IPR000994 Peptidase M24 AMF_622 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Gene3D G3DSA:3.90.230.10 283 570 1.9E-95 T 13-10-2018 AMF_622 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Pfam PF01321 Creatinase/Prolidase N-terminal domain 5 126 3.7E-12 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 AMF_622 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Gene3D G3DSA:3.40.350.10 139 274 4.4E-12 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMF_622 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Pfam PF16189 Creatinase/Prolidase N-terminal domain 140 289 5.9E-24 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 11 475 3.8E-154 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 SUPERFAMILY SSF55424 356 474 1.31E-36 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 Gene3D G3DSA:3.50.50.60 155 275 5.8E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 180 198 1.8E-37 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 268 284 1.8E-37 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 1.8E-37 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 13 32 1.8E-37 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 297 319 1.8E-37 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 46 56 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 269 283 5.7E-66 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 180 205 5.7E-66 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 155 5.7E-66 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 312 319 5.7E-66 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 354 375 5.7E-66 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 441 461 5.7E-66 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 45 60 5.7E-66 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 419 434 5.7E-66 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 12 34 5.7E-66 T 13-10-2018 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 Gene3D G3DSA:3.30.390.30 358 477 6.4E-37 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 358 466 1.4E-31 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 PIRSF PIRSF000350 7 471 1.3E-80 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 Gene3D G3DSA:3.50.50.60 12 332 5.8E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 12 332 7.1E-65 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_156 5e47ea418dd6bb7d66018d0e9c7217d2 477 SUPERFAMILY SSF51905 8 341 1.39E-62 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_598 4594243bbb9c328d4e68d3a6002e331c 147 Pfam PF00692 dUTPase 16 146 1.9E-31 T 13-10-2018 IPR029054 dUTPase-like AMF_598 4594243bbb9c328d4e68d3a6002e331c 147 TIGRFAM TIGR00576 dut: dUTP diphosphatase 14 146 2.7E-53 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 AMF_598 4594243bbb9c328d4e68d3a6002e331c 147 SUPERFAMILY SSF51283 4 146 4.32E-52 T 13-10-2018 IPR036157 dUTPase-like superfamily AMF_598 4594243bbb9c328d4e68d3a6002e331c 147 Gene3D G3DSA:2.70.40.10 1 147 1.4E-53 T 13-10-2018 IPR036157 dUTPase-like superfamily AMF_598 4594243bbb9c328d4e68d3a6002e331c 147 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 2 147 33.405 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 AMF_610 99be7730d273e92684fd5d68e2e7c226 313 SUPERFAMILY SSF102114 33 295 3.66E-63 T 13-10-2018 AMF_610 99be7730d273e92684fd5d68e2e7c226 313 Pfam PF04055 Radical SAM superfamily 75 234 1.2E-11 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMF_610 99be7730d273e92684fd5d68e2e7c226 313 TIGRFAM TIGR00510 lipA: lipoyl synthase 20 300 6.7E-113 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMF_610 99be7730d273e92684fd5d68e2e7c226 313 Gene3D G3DSA:3.20.20.70 61 281 1.5E-20 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_610 99be7730d273e92684fd5d68e2e7c226 313 PIRSF PIRSF005963 12 312 2.3E-132 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMF_610 99be7730d273e92684fd5d68e2e7c226 313 SMART SM00729 68 275 6.5E-12 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMF_610 99be7730d273e92684fd5d68e2e7c226 313 Hamap MF_00206 Lipoyl synthase [lipA]. 1 309 143.364 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMF_441 273f83038b7c870d5ffdae88f0684e13 315 Gene3D G3DSA:3.60.10.10 41 311 3.7E-70 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMF_441 273f83038b7c870d5ffdae88f0684e13 315 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 42 311 8.5E-66 T 13-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMF_441 273f83038b7c870d5ffdae88f0684e13 315 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 42 310 8.2E-69 T 13-10-2018 AMF_441 273f83038b7c870d5ffdae88f0684e13 315 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 44 304 2.1E-18 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMF_441 273f83038b7c870d5ffdae88f0684e13 315 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 268 279 - T 13-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 AMF_441 273f83038b7c870d5ffdae88f0684e13 315 SUPERFAMILY SSF56219 41 312 1.31E-77 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMF_785 cbb864b21136bb33387abc6b778bc5b3 106 Gene3D G3DSA:1.10.20.60 9 104 5.4E-12 T 13-10-2018 AMF_785 cbb864b21136bb33387abc6b778bc5b3 106 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 29 100 3.8E-10 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMF_785 cbb864b21136bb33387abc6b778bc5b3 106 SUPERFAMILY SSF141000 12 104 7.98E-16 T 13-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 AMF_436 bc28d549e0dbbe3107809980037b2aad 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 230 247 3.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_436 bc28d549e0dbbe3107809980037b2aad 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 263 283 3.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_436 bc28d549e0dbbe3107809980037b2aad 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 147 3.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_436 bc28d549e0dbbe3107809980037b2aad 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 228 3.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_436 bc28d549e0dbbe3107809980037b2aad 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 65 82 3.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_436 bc28d549e0dbbe3107809980037b2aad 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 199 3.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_436 bc28d549e0dbbe3107809980037b2aad 302 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 64 245 7.0E-5 T 13-10-2018 AMF_436 bc28d549e0dbbe3107809980037b2aad 302 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 70 299 3.3E-65 T 13-10-2018 AMF_436 bc28d549e0dbbe3107809980037b2aad 302 SUPERFAMILY SSF51735 63 301 1.43E-85 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_436 bc28d549e0dbbe3107809980037b2aad 302 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 196 224 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMF_436 bc28d549e0dbbe3107809980037b2aad 302 Gene3D G3DSA:3.40.50.720 55 301 6.1E-84 T 13-10-2018 AMF_436 bc28d549e0dbbe3107809980037b2aad 302 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 189 197 4.9E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_436 bc28d549e0dbbe3107809980037b2aad 302 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 147 4.9E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_436 bc28d549e0dbbe3107809980037b2aad 302 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 228 4.9E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_436 bc28d549e0dbbe3107809980037b2aad 302 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 67 299 3.1E-90 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMF_835 d622da57014b02b31554e69084929c2d 674 SUPERFAMILY SSF48435 100 417 3.92E-16 T 13-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 AMF_835 d622da57014b02b31554e69084929c2d 674 Gene3D G3DSA:1.25.40.10 197 412 9.3E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMF_835 d622da57014b02b31554e69084929c2d 674 Pfam PF01464 Transglycosylase SLT domain 520 617 5.3E-27 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 AMF_835 d622da57014b02b31554e69084929c2d 674 Gene3D G3DSA:1.10.530.10 509 670 3.1E-40 T 13-10-2018 AMF_835 d622da57014b02b31554e69084929c2d 674 SUPERFAMILY SSF53955 510 655 1.0E-37 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily AMF_681 cda914ae49d4926da89809e1e08e0463 190 Gene3D G3DSA:3.90.930.12 9 94 2.5E-15 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_681 cda914ae49d4926da89809e1e08e0463 190 PRINTS PR00059 Ribosomal protein L6 signature 83 108 6.0E-20 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_681 cda914ae49d4926da89809e1e08e0463 190 PRINTS PR00059 Ribosomal protein L6 signature 153 174 6.0E-20 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_681 cda914ae49d4926da89809e1e08e0463 190 PRINTS PR00059 Ribosomal protein L6 signature 111 127 6.0E-20 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_681 cda914ae49d4926da89809e1e08e0463 190 Pfam PF00347 Ribosomal protein L6 20 94 1.7E-5 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_681 cda914ae49d4926da89809e1e08e0463 190 Pfam PF00347 Ribosomal protein L6 103 174 3.7E-14 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_681 cda914ae49d4926da89809e1e08e0463 190 SUPERFAMILY SSF56053 11 94 1.1E-12 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_681 cda914ae49d4926da89809e1e08e0463 190 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 11 187 3.1E-58 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_681 cda914ae49d4926da89809e1e08e0463 190 SUPERFAMILY SSF56053 95 187 6.33E-30 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_681 cda914ae49d4926da89809e1e08e0463 190 PIRSF PIRSF002162 9 190 4.3E-37 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_681 cda914ae49d4926da89809e1e08e0463 190 Gene3D G3DSA:3.90.930.12 95 190 1.2E-30 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 SMART SM00878 339 446 2.1E-51 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 SUPERFAMILY SSF51246 334 449 6.28E-38 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 615 632 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 Gene3D G3DSA:2.40.50.100 591 658 1.3E-18 T 13-10-2018 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 289 296 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 Pfam PF00364 Biotin-requiring enzyme 596 657 2.5E-14 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 SUPERFAMILY SSF56059 86 351 5.13E-69 T 13-10-2018 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 156 170 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 Pfam PF02785 Biotin carboxylase C-terminal domain 339 446 2.2E-36 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 Pfam PF00289 Biotin carboxylase, N-terminal domain 4 113 4.8E-42 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 SUPERFAMILY SSF52440 3 116 2.88E-47 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 325 1.0E-74 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 Gene3D G3DSA:3.30.470.130 1 450 8.5E-192 T 13-10-2018 AMF_614 037a2c5b02eb6d6796816a0d9c0a2557 662 SUPERFAMILY SSF51230 586 657 3.14E-18 T 13-10-2018 IPR011053 Single hybrid motif AMF_234 9e7aa5b97213c125c462383cf86eb5ce 277 Gene3D G3DSA:3.30.70.100 3 100 9.6E-31 T 13-10-2018 AMF_234 9e7aa5b97213c125c462383cf86eb5ce 277 Gene3D G3DSA:3.40.250.10 109 252 2.6E-44 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AMF_234 9e7aa5b97213c125c462383cf86eb5ce 277 Pfam PF00581 Rhodanese-like domain 125 213 2.6E-8 T 13-10-2018 IPR001763 Rhodanese-like domain AMF_234 9e7aa5b97213c125c462383cf86eb5ce 277 SMART SM00450 116 218 2.6E-15 T 13-10-2018 IPR001763 Rhodanese-like domain AMF_234 9e7aa5b97213c125c462383cf86eb5ce 277 SUPERFAMILY SSF52821 113 229 4.25E-27 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily AMF_234 9e7aa5b97213c125c462383cf86eb5ce 277 Hamap MF_00469 UPF0176 protein YceA [yceA]. 6 258 40.115 T 13-10-2018 IPR020936 Uncharacterised protein family UPF0176 AMF_443 3e143f4c2270bbe313fc0c39d24a936e 112 ProSitePatterns PS00828 Ribosomal protein L36 signature. 84 110 - T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_443 3e143f4c2270bbe313fc0c39d24a936e 112 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 71 111 16.329 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_443 3e143f4c2270bbe313fc0c39d24a936e 112 Pfam PF00444 Ribosomal protein L36 72 111 4.7E-15 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_443 3e143f4c2270bbe313fc0c39d24a936e 112 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 79 111 2.6E-7 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_443 3e143f4c2270bbe313fc0c39d24a936e 112 SUPERFAMILY SSF57840 76 111 9.94E-12 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_955 dcc80b17bc75df7e2fc893c3f0f0c17a 275 SMART SM00470 30 121 4.3E-32 T 13-10-2018 IPR003115 ParB/Sulfiredoxin AMF_955 dcc80b17bc75df7e2fc893c3f0f0c17a 275 SUPERFAMILY SSF110849 31 123 5.23E-26 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMF_955 dcc80b17bc75df7e2fc893c3f0f0c17a 275 SUPERFAMILY SSF109709 113 221 2.88E-32 T 13-10-2018 AMF_955 dcc80b17bc75df7e2fc893c3f0f0c17a 275 Pfam PF02195 ParB-like nuclease domain 31 121 5.1E-25 T 13-10-2018 IPR003115 ParB/Sulfiredoxin AMF_955 dcc80b17bc75df7e2fc893c3f0f0c17a 275 Gene3D G3DSA:1.10.10.2830 108 219 5.0E-34 T 13-10-2018 AMF_955 dcc80b17bc75df7e2fc893c3f0f0c17a 275 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 30 201 1.9E-56 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMF_955 dcc80b17bc75df7e2fc893c3f0f0c17a 275 Gene3D G3DSA:3.90.1530.30 43 107 4.8E-26 T 13-10-2018 AMF_568 da0dbda5a3582f503903ffef48cd6ca6 359 Pfam PF00472 RF-1 domain 212 321 1.0E-39 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMF_568 da0dbda5a3582f503903ffef48cd6ca6 359 SMART SM00937 64 179 6.3E-51 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMF_568 da0dbda5a3582f503903ffef48cd6ca6 359 Gene3D G3DSA:3.30.70.1660 113 343 3.4E-93 T 13-10-2018 AMF_568 da0dbda5a3582f503903ffef48cd6ca6 359 Gene3D G3DSA:3.30.160.20 211 297 3.4E-93 T 13-10-2018 AMF_568 da0dbda5a3582f503903ffef48cd6ca6 359 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 3 358 37.678 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMF_568 da0dbda5a3582f503903ffef48cd6ca6 359 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 5 358 5.4E-148 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMF_568 da0dbda5a3582f503903ffef48cd6ca6 359 Pfam PF03462 PCRF domain 12 204 3.3E-61 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMF_568 da0dbda5a3582f503903ffef48cd6ca6 359 SUPERFAMILY SSF75620 11 354 4.84E-123 T 13-10-2018 AMF_568 da0dbda5a3582f503903ffef48cd6ca6 359 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMF_330 fff0438beafe3eb99cee3be63008f946 140 SUPERFAMILY SSF82093 29 130 7.85E-32 T 13-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 AMF_330 fff0438beafe3eb99cee3be63008f946 140 Gene3D G3DSA:2.40.50.140 29 132 6.1E-32 T 13-10-2018 AMF_330 fff0438beafe3eb99cee3be63008f946 140 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 140 28.839 T 13-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 AMF_330 fff0438beafe3eb99cee3be63008f946 140 Pfam PF03100 CcmE 3 128 5.3E-37 T 13-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 298 312 4.4E-7 T 13-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 219 234 4.4E-7 T 13-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 350 362 4.4E-7 T 13-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 326 339 4.4E-7 T 13-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 Gene3D G3DSA:3.30.230.10 10 170 2.3E-8 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 SMART SM00382 220 401 1.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 SUPERFAMILY SSF52540 200 507 3.08E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 412 507 1.3E-20 T 13-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 Gene3D G3DSA:3.40.50.300 186 512 7.6E-54 T 13-10-2018 AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 SUPERFAMILY SSF54211 7 169 1.1E-29 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 142 5.6E-40 T 13-10-2018 AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 Pfam PF01078 Magnesium chelatase, subunit ChlI 200 401 1.0E-91 T 13-10-2018 IPR000523 Magnesium chelatase ChlI domain AMF_468 bcecfc62e8c22175ecfc3036ae4cf342 514 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 5 507 1.8E-151 T 13-10-2018 IPR004482 Mg chelatase-related protein AMF_498 907cb693df4003ba96657b6cae5400ba 219 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 2 211 2.7E-76 T 13-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMF_498 907cb693df4003ba96657b6cae5400ba 219 ProSitePatterns PS00958 Transaldolase active site. 80 97 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMF_498 907cb693df4003ba96657b6cae5400ba 219 SUPERFAMILY SSF51569 2 212 6.91E-69 T 13-10-2018 AMF_498 907cb693df4003ba96657b6cae5400ba 219 Gene3D G3DSA:3.20.20.70 1 217 1.8E-80 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_498 907cb693df4003ba96657b6cae5400ba 219 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 201 1.9E-51 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMF_985 26fd07ea2ee7902ca4ce470f1e4cee8a 172 Pfam PF04586 Caudovirus prohead serine protease 21 155 1.7E-34 T 13-10-2018 IPR006433 Prohead protease AMF_985 26fd07ea2ee7902ca4ce470f1e4cee8a 172 TIGRFAM TIGR01543 proheadase_HK97: phage prohead protease, HK97 family 24 156 1.6E-36 T 13-10-2018 IPR006433 Prohead protease AMF_985 26fd07ea2ee7902ca4ce470f1e4cee8a 172 SUPERFAMILY SSF50789 28 145 1.44E-5 T 13-10-2018 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 SMART SM01097 45 174 1.6E-69 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 Gene3D G3DSA:3.40.50.880 189 404 2.1E-61 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 SUPERFAMILY SSF52021 46 186 3.92E-49 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 PRINTS PR00096 Glutamine amidotransferase superfamily signature 290 301 4.4E-12 T 13-10-2018 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 PRINTS PR00096 Glutamine amidotransferase superfamily signature 375 388 4.4E-12 T 13-10-2018 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 PRINTS PR00096 Glutamine amidotransferase superfamily signature 261 270 4.4E-12 T 13-10-2018 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 Gene3D G3DSA:3.50.30.20 44 188 6.7E-49 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 47 173 2.8E-44 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 Pfam PF00117 Glutamine amidotransferase class-I 220 398 5.4E-41 T 13-10-2018 IPR017926 Glutamine amidotransferase AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 45 404 41.98 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 SUPERFAMILY SSF52317 204 403 2.66E-53 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 47 400 6.5E-123 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 PRINTS PR00097 Anthranilate synthase component II signature 290 301 2.2E-7 T 13-10-2018 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 PRINTS PR00097 Anthranilate synthase component II signature 261 270 2.2E-7 T 13-10-2018 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 PRINTS PR00097 Anthranilate synthase component II signature 375 388 2.2E-7 T 13-10-2018 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 218 232 5.6E-33 T 13-10-2018 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 307 324 5.6E-33 T 13-10-2018 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 258 272 5.6E-33 T 13-10-2018 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 290 306 5.6E-33 T 13-10-2018 AMF_595 3ea9e5f9a6bcdce530c02de51bfaf352 405 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 332 343 5.6E-33 T 13-10-2018 AMF_942 ad5ae348f91707897cf2b09d5ceb1bb6 501 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 251 481 3.8E-69 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_942 ad5ae348f91707897cf2b09d5ceb1bb6 501 Gene3D G3DSA:1.20.1640.10 333 499 9.0E-8 T 13-10-2018 AMF_942 ad5ae348f91707897cf2b09d5ceb1bb6 501 SUPERFAMILY SSF82866 298 492 4.84E-39 T 13-10-2018 AMF_942 ad5ae348f91707897cf2b09d5ceb1bb6 501 Pfam PF02355 Protein export membrane protein 322 489 3.3E-16 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMF_942 ad5ae348f91707897cf2b09d5ceb1bb6 501 Gene3D G3DSA:3.30.70.3400 137 325 7.0E-47 T 13-10-2018 AMF_942 ad5ae348f91707897cf2b09d5ceb1bb6 501 Gene3D G3DSA:3.30.1360.200 188 319 7.0E-47 T 13-10-2018 AMF_942 ad5ae348f91707897cf2b09d5ceb1bb6 501 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 501 37.469 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMF_942 ad5ae348f91707897cf2b09d5ceb1bb6 501 Pfam PF07549 SecD/SecF GG Motif 32 54 9.7E-5 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMF_942 ad5ae348f91707897cf2b09d5ceb1bb6 501 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 39 488 1.2E-117 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMF_307 0459e0604a18e0529e01e2d58ba4a1bf 529 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 173 3.9E-15 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMF_307 0459e0604a18e0529e01e2d58ba4a1bf 529 Gene3D G3DSA:3.30.450.330 198 519 8.3E-92 T 13-10-2018 AMF_307 0459e0604a18e0529e01e2d58ba4a1bf 529 SUPERFAMILY SSF56519 67 186 6.67E-30 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AMF_307 0459e0604a18e0529e01e2d58ba4a1bf 529 SUPERFAMILY SSF56601 199 526 5.44E-79 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMF_307 0459e0604a18e0529e01e2d58ba4a1bf 529 Pfam PF00905 Penicillin binding protein transpeptidase domain 224 515 9.0E-58 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMF_307 0459e0604a18e0529e01e2d58ba4a1bf 529 Gene3D G3DSA:3.40.710.10 258 437 8.3E-92 T 13-10-2018 AMF_307 0459e0604a18e0529e01e2d58ba4a1bf 529 Gene3D G3DSA:3.90.1310.10 59 195 5.0E-17 T 13-10-2018 AMF_881 883f100a50485213005afc6924a9553e 271 SUPERFAMILY SSF103025 3 206 1.88E-51 T 13-10-2018 AMF_881 883f100a50485213005afc6924a9553e 271 Gene3D G3DSA:3.30.1360.120 1 134 1.7E-24 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMF_881 883f100a50485213005afc6924a9553e 271 Gene3D G3DSA:3.30.1360.120 142 266 1.0E-14 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMF_881 883f100a50485213005afc6924a9553e 271 Pfam PF01571 Aminomethyltransferase folate-binding domain 11 100 2.4E-10 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AMF_881 883f100a50485213005afc6924a9553e 271 PIRSF PIRSF006487 145 239 8.1 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMF_881 883f100a50485213005afc6924a9553e 271 PIRSF PIRSF006487 1 138 8.6E-8 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMF_881 883f100a50485213005afc6924a9553e 271 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 151 214 6.9E-21 T 13-10-2018 IPR017703 YgfZ/GcvT conserved site AMF_881 883f100a50485213005afc6924a9553e 271 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 191 257 2.4E-4 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMF_094 fd7d44112b412b684ec338484988505f 293 Gene3D G3DSA:3.40.1160.10 57 293 2.5E-66 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMF_094 fd7d44112b412b684ec338484988505f 293 SUPERFAMILY SSF53633 61 292 3.67E-61 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMF_094 fd7d44112b412b684ec338484988505f 293 Pfam PF00696 Amino acid kinase family 64 271 2.6E-27 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMF_094 fd7d44112b412b684ec338484988505f 293 Hamap MF_01220_B Uridylate kinase [pyrH]. 60 292 41.883 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AMF_094 fd7d44112b412b684ec338484988505f 293 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 62 291 1.9E-90 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AMF_777 407aedc13d2b6576ea954faa350b31a2 175 Pfam PF00719 Inorganic pyrophosphatase 18 172 2.5E-48 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMF_777 407aedc13d2b6576ea954faa350b31a2 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMF_777 407aedc13d2b6576ea954faa350b31a2 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 33.672 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMF_777 407aedc13d2b6576ea954faa350b31a2 175 Gene3D G3DSA:3.90.80.10 5 175 1.4E-65 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMF_777 407aedc13d2b6576ea954faa350b31a2 175 SUPERFAMILY SSF50324 4 171 6.8E-60 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMF_671 95a4fb43c16ba696d7d62ef2d89b7e01 134 Pfam PF01196 Ribosomal protein L17 20 121 8.9E-29 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_671 95a4fb43c16ba696d7d62ef2d89b7e01 134 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_671 95a4fb43c16ba696d7d62ef2d89b7e01 134 Gene3D G3DSA:3.90.1030.10 3 128 2.4E-40 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_671 95a4fb43c16ba696d7d62ef2d89b7e01 134 TIGRFAM TIGR00059 L17: ribosomal protein bL17 6 122 3.6E-33 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_671 95a4fb43c16ba696d7d62ef2d89b7e01 134 SUPERFAMILY SSF64263 1 123 4.45E-40 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_671 95a4fb43c16ba696d7d62ef2d89b7e01 134 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 121 23.876 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_240 6b9f72ad113128d667077b685e55c4b0 757 SMART SM00843 696 757 1.3E-23 T 13-10-2018 IPR018541 FtsK gamma domain AMF_240 6b9f72ad113128d667077b685e55c4b0 757 Gene3D G3DSA:1.10.10.10 694 756 2.6E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMF_240 6b9f72ad113128d667077b685e55c4b0 757 Pfam PF09397 Ftsk gamma domain 698 755 4.2E-21 T 13-10-2018 IPR018541 FtsK gamma domain AMF_240 6b9f72ad113128d667077b685e55c4b0 757 SUPERFAMILY SSF46785 697 755 2.04E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMF_240 6b9f72ad113128d667077b685e55c4b0 757 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 24 152 1.3E-13 T 13-10-2018 IPR025199 DNA translocase FtsK, 4TM region AMF_240 6b9f72ad113128d667077b685e55c4b0 757 Gene3D G3DSA:3.40.50.300 374 681 2.2E-109 T 13-10-2018 AMF_240 6b9f72ad113128d667077b685e55c4b0 757 SUPERFAMILY SSF52540 362 667 3.03E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_240 6b9f72ad113128d667077b685e55c4b0 757 Pfam PF01580 FtsK/SpoIIIE family 378 596 3.2E-62 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMF_240 6b9f72ad113128d667077b685e55c4b0 757 Gene3D G3DSA:3.30.980.40 268 373 5.1E-25 T 13-10-2018 AMF_059 69e8e6a1b8a819e953623daaa6e92a5b 125 Pfam PF04956 TrbC/VIRB2 family 10 102 3.9E-16 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_215 bda84147b13f8d50e8ce0f6d3c69442b 127 SUPERFAMILY SSF81343 4 126 2.4E-28 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_215 bda84147b13f8d50e8ce0f6d3c69442b 127 PIRSF PIRSF000178 2 126 7.9E-36 T 13-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_215 bda84147b13f8d50e8ce0f6d3c69442b 127 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 4 120 4.4E-28 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_215 bda84147b13f8d50e8ce0f6d3c69442b 127 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 82 95 - T 13-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_215 bda84147b13f8d50e8ce0f6d3c69442b 127 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 5 123 1.0E-37 T 13-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_215 bda84147b13f8d50e8ce0f6d3c69442b 127 Gene3D G3DSA:1.20.1300.10 2 126 3.1E-34 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_215 bda84147b13f8d50e8ce0f6d3c69442b 127 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 6 30 - T 13-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 513 1.3E-167 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 513 37.883 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 SMART SM00798 136 449 5.2E-164 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 SMART SM00851 19 131 8.3E-40 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 SUPERFAMILY SSF52335 8 195 9.77E-56 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 SUPERFAMILY SSF53927 211 513 1.81E-113 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 Gene3D G3DSA:3.40.140.20 206 364 1.5E-55 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 448 6.2E-105 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 Gene3D G3DSA:3.40.140.20 383 513 1.9E-52 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 PIRSF PIRSF000414 1 513 9.8E-203 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 Gene3D G3DSA:3.40.50.1380 2 200 4.2E-69 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMF_831 2ab6801e1ae17fd2da8105fe0a348e3b 513 Pfam PF02142 MGS-like domain 20 130 6.1E-19 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain AMF_387 670965095f00db9a7a36c7a667229362 295 Pfam PF04085 rod shape-determining protein MreC 158 268 8.6E-23 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AMF_387 670965095f00db9a7a36c7a667229362 295 Gene3D G3DSA:2.40.10.340 144 219 2.0E-10 T 13-10-2018 AMF_744 413f515dc1a3e2033dbf3670bb5e8fb1 234 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 70 198 1.1E-30 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMF_744 413f515dc1a3e2033dbf3670bb5e8fb1 234 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 69 198 1.2E-27 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMF_744 413f515dc1a3e2033dbf3670bb5e8fb1 234 Gene3D G3DSA:3.30.70.560 68 226 1.2E-42 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMF_744 413f515dc1a3e2033dbf3670bb5e8fb1 234 SUPERFAMILY SSF55083 68 219 6.41E-39 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMF_861 8fd05dcba3aa481620042298501f6d80 330 Pfam PF01617 Surface antigen 114 284 1.2E-26 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_861 8fd05dcba3aa481620042298501f6d80 330 SUPERFAMILY SSF56925 37 265 6.8E-13 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 ProSitePatterns PS01008 DnaA protein signature. 430 449 - T 13-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 SUPERFAMILY SSF48295 367 470 4.71E-36 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 Pfam PF11638 DnaA N-terminal domain 24 85 3.2E-16 T 13-10-2018 IPR024633 DnaA N-terminal domain AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 Gene3D G3DSA:3.40.50.300 127 300 1.5E-49 T 13-10-2018 AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 383 449 3.9E-28 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 SMART SM00382 169 297 5.3E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 26 470 2.0E-162 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 Pfam PF00308 Bacterial dnaA protein 135 353 2.9E-87 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 Gene3D G3DSA:1.10.8.60 303 374 1.2E-22 T 13-10-2018 AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 268 295 3.7E-47 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 170 190 3.7E-47 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 430 449 3.7E-47 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 234 248 3.7E-47 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 202 216 3.7E-47 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 SMART SM00760 380 449 1.2E-38 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 SUPERFAMILY SSF52540 134 349 1.38E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 23 471 31.357 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 Gene3D G3DSA:1.10.1750.10 379 471 6.6E-32 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMF_314 0b711dc48342aa99e86eb5dea9cda3b5 471 Gene3D G3DSA:3.30.300.180 24 117 5.5E-8 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily AMF_178 71aa9d8b3d2d5931da591d9496f4f10d 441 Gene3D G3DSA:2.120.10.30 170 441 7.3E-69 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMF_178 71aa9d8b3d2d5931da591d9496f4f10d 441 Pfam PF04052 TolB amino-terminal domain 28 134 4.0E-19 T 13-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AMF_178 71aa9d8b3d2d5931da591d9496f4f10d 441 Pfam PF07676 WD40-like Beta Propeller Repeat 329 357 3.4E-5 T 13-10-2018 IPR011659 WD40-like Beta Propeller AMF_178 71aa9d8b3d2d5931da591d9496f4f10d 441 Pfam PF07676 WD40-like Beta Propeller Repeat 285 320 2.9E-8 T 13-10-2018 IPR011659 WD40-like Beta Propeller AMF_178 71aa9d8b3d2d5931da591d9496f4f10d 441 Pfam PF07676 WD40-like Beta Propeller Repeat 382 396 0.026 T 13-10-2018 IPR011659 WD40-like Beta Propeller AMF_178 71aa9d8b3d2d5931da591d9496f4f10d 441 Pfam PF07676 WD40-like Beta Propeller Repeat 249 275 0.29 T 13-10-2018 IPR011659 WD40-like Beta Propeller AMF_178 71aa9d8b3d2d5931da591d9496f4f10d 441 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 9 435 40.638 T 13-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 AMF_178 71aa9d8b3d2d5931da591d9496f4f10d 441 Gene3D G3DSA:3.40.50.10070 23 169 4.1E-24 T 13-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 AMF_178 71aa9d8b3d2d5931da591d9496f4f10d 441 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 22 436 2.6E-115 T 13-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 AMF_178 71aa9d8b3d2d5931da591d9496f4f10d 441 SUPERFAMILY SSF69304 161 437 5.62E-53 T 13-10-2018 AMF_178 71aa9d8b3d2d5931da591d9496f4f10d 441 SUPERFAMILY SSF52964 32 166 1.09E-26 T 13-10-2018 AMF_244 c2d7e4d571e0dbb89e4262242843137c 474 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 306 1.6E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_244 c2d7e4d571e0dbb89e4262242843137c 474 SMART SM00388 238 307 1.9E-23 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_244 c2d7e4d571e0dbb89e4262242843137c 474 Gene3D G3DSA:3.30.565.10 318 472 4.7E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_244 c2d7e4d571e0dbb89e4262242843137c 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 5.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMF_244 c2d7e4d571e0dbb89e4262242843137c 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 462 5.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMF_244 c2d7e4d571e0dbb89e4262242843137c 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 443 5.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMF_244 c2d7e4d571e0dbb89e4262242843137c 474 SUPERFAMILY SSF47384 224 308 9.61E-22 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMF_244 c2d7e4d571e0dbb89e4262242843137c 474 Gene3D G3DSA:1.10.287.130 208 305 5.2E-28 T 13-10-2018 AMF_244 c2d7e4d571e0dbb89e4262242843137c 474 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 354 464 1.2E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMF_244 c2d7e4d571e0dbb89e4262242843137c 474 SMART SM00387 353 465 3.9E-33 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMF_244 c2d7e4d571e0dbb89e4262242843137c 474 SUPERFAMILY SSF55874 296 463 1.27E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_446 9e2b650d7f3166dd2cec3f76900c5c3b 90 PRINTS PR00063 Ribosomal protein L27 signature 4 28 9.7E-34 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_446 9e2b650d7f3166dd2cec3f76900c5c3b 90 PRINTS PR00063 Ribosomal protein L27 signature 29 53 9.7E-34 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_446 9e2b650d7f3166dd2cec3f76900c5c3b 90 PRINTS PR00063 Ribosomal protein L27 signature 54 78 9.7E-34 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_446 9e2b650d7f3166dd2cec3f76900c5c3b 90 TIGRFAM TIGR00062 L27: ribosomal protein bL27 2 81 7.1E-33 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_446 9e2b650d7f3166dd2cec3f76900c5c3b 90 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 25.412 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_446 9e2b650d7f3166dd2cec3f76900c5c3b 90 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 29 69 9.0E-18 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_446 9e2b650d7f3166dd2cec3f76900c5c3b 90 Pfam PF01016 Ribosomal L27 protein 2 79 3.0E-35 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_446 9e2b650d7f3166dd2cec3f76900c5c3b 90 SUPERFAMILY SSF110324 2 83 6.13E-32 T 13-10-2018 AMF_446 9e2b650d7f3166dd2cec3f76900c5c3b 90 Gene3D G3DSA:2.40.50.100 21 88 1.1E-27 T 13-10-2018 AMF_446 9e2b650d7f3166dd2cec3f76900c5c3b 90 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 13-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_624 096bdf1aec7acc8d454702fea9e3dbe3 286 SUPERFAMILY SSF53098 10 237 5.31E-34 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AMF_624 096bdf1aec7acc8d454702fea9e3dbe3 286 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 56 270 1.8E-78 T 13-10-2018 IPR019288 Predicted 3'-5' exonuclease, PolB-like AMF_624 096bdf1aec7acc8d454702fea9e3dbe3 286 Gene3D G3DSA:3.30.420.10 40 228 1.5E-19 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMF_884 e852af310a91ba7572087e7e8ee24477 149 TIGRFAM TIGR00086 smpB: SsrA-binding protein 4 144 1.7E-53 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMF_884 e852af310a91ba7572087e7e8ee24477 149 Hamap MF_00023 SsrA-binding protein [smpB]. 1 149 62.985 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMF_884 e852af310a91ba7572087e7e8ee24477 149 ProSitePatterns PS01317 SsrA-binding protein. 22 34 - T 13-10-2018 IPR020081 SsrA-binding protein, conserved site AMF_884 e852af310a91ba7572087e7e8ee24477 149 Pfam PF01668 SmpB protein 4 146 2.2E-55 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMF_884 e852af310a91ba7572087e7e8ee24477 149 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 4 128 3.0E-46 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMF_884 e852af310a91ba7572087e7e8ee24477 149 SUPERFAMILY SSF74982 2 128 3.4E-45 T 13-10-2018 IPR023620 Small protein B AMF_884 e852af310a91ba7572087e7e8ee24477 149 Gene3D G3DSA:2.40.280.10 1 125 3.3E-44 T 13-10-2018 IPR023620 Small protein B AMF_213 e527a19814e9b20c39c46475bd42c706 1127 Pfam PF02811 PHP domain 8 169 1.8E-24 T 13-10-2018 IPR004013 PHP domain GO:0003824 AMF_213 e527a19814e9b20c39c46475bd42c706 1127 Gene3D G3DSA:1.10.10.1600 424 499 2.7E-25 T 13-10-2018 AMF_213 e527a19814e9b20c39c46475bd42c706 1127 Gene3D G3DSA:3.20.20.140 3 264 1.6E-69 T 13-10-2018 AMF_213 e527a19814e9b20c39c46475bd42c706 1127 SMART SM00481 7 74 1.4E-18 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AMF_213 e527a19814e9b20c39c46475bd42c706 1127 SUPERFAMILY SSF89550 6 258 5.69E-14 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AMF_213 e527a19814e9b20c39c46475bd42c706 1127 Pfam PF14579 Helix-hairpin-helix motif 788 875 1.7E-21 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_213 e527a19814e9b20c39c46475bd42c706 1127 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 287 715 2.3E-167 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_213 e527a19814e9b20c39c46475bd42c706 1127 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1000 0.0 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_998 4f67426c1fb96155aaf9726386ab1cf1 408 SUPERFAMILY SSF53335 179 367 1.53E-26 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_998 4f67426c1fb96155aaf9726386ab1cf1 408 SMART SM00028 124 157 2.0E-6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMF_998 4f67426c1fb96155aaf9726386ab1cf1 408 Gene3D G3DSA:3.40.50.150 168 358 4.3E-23 T 13-10-2018 AMF_998 4f67426c1fb96155aaf9726386ab1cf1 408 Pfam PF13649 Methyltransferase domain 225 322 2.4E-14 T 13-10-2018 AMF_998 4f67426c1fb96155aaf9726386ab1cf1 408 SUPERFAMILY SSF48452 90 167 1.83E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMF_998 4f67426c1fb96155aaf9726386ab1cf1 408 Pfam PF13181 Tetratricopeptide repeat 125 157 6.9E-6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMF_998 4f67426c1fb96155aaf9726386ab1cf1 408 Gene3D G3DSA:1.25.40.10 72 167 1.5E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMF_1023 acbb5fded312cf5e50213516656f93b2 187 SUPERFAMILY SSF52833 5 186 3.75E-42 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_1023 acbb5fded312cf5e50213516656f93b2 187 Pfam PF00578 AhpC/TSA family 14 132 2.0E-13 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMF_1023 acbb5fded312cf5e50213516656f93b2 187 Gene3D G3DSA:3.40.30.10 6 187 5.9E-39 T 13-10-2018 AMF_844 66ba42c2485de10207986a55dad18b7c 424 Pfam PF14450 Cell division protein FtsA 224 387 6.8E-19 T 13-10-2018 AMF_844 66ba42c2485de10207986a55dad18b7c 424 Pfam PF02491 SHS2 domain inserted in FTSA 104 178 3.4E-10 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMF_844 66ba42c2485de10207986a55dad18b7c 424 Gene3D G3DSA:3.30.1490.110 102 185 3.3E-81 T 13-10-2018 AMF_844 66ba42c2485de10207986a55dad18b7c 424 Gene3D G3DSA:3.30.420.40 30 385 3.3E-81 T 13-10-2018 AMF_844 66ba42c2485de10207986a55dad18b7c 424 Gene3D G3DSA:3.30.420.40 213 364 3.3E-81 T 13-10-2018 AMF_844 66ba42c2485de10207986a55dad18b7c 424 Gene3D G3DSA:3.90.640.10 251 315 3.3E-81 T 13-10-2018 AMF_844 66ba42c2485de10207986a55dad18b7c 424 PIRSF PIRSF003101 18 421 4.6E-98 T 13-10-2018 IPR020823 Cell division protein FtsA AMF_844 66ba42c2485de10207986a55dad18b7c 424 SUPERFAMILY SSF53067 214 390 7.41E-37 T 13-10-2018 AMF_844 66ba42c2485de10207986a55dad18b7c 424 SUPERFAMILY SSF53067 26 213 1.06E-35 T 13-10-2018 AMF_844 66ba42c2485de10207986a55dad18b7c 424 SMART SM00842 27 212 1.3E-57 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMF_844 66ba42c2485de10207986a55dad18b7c 424 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 27 388 4.7E-83 T 13-10-2018 IPR020823 Cell division protein FtsA AMF_844 66ba42c2485de10207986a55dad18b7c 424 Hamap MF_02033 Cell division protein FtsA [ftsA]. 23 422 21.981 T 13-10-2018 IPR020823 Cell division protein FtsA AMF_222 9f730cc3cbc83e598333f39275060f1b 117 Pfam PF04384 Iron-sulphur cluster assembly 53 115 5.7E-28 T 13-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMF_222 9f730cc3cbc83e598333f39275060f1b 117 Gene3D G3DSA:1.10.10.600 48 116 1.8E-26 T 13-10-2018 IPR036762 IscX-like superfamily AMF_222 9f730cc3cbc83e598333f39275060f1b 117 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 54 116 5.5E-31 T 13-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMF_222 9f730cc3cbc83e598333f39275060f1b 117 SUPERFAMILY SSF140319 52 114 6.28E-24 T 13-10-2018 IPR036762 IscX-like superfamily AMF_826 f1c9cea461b1137be0a71a42cd231ed8 110 Gene3D G3DSA:1.10.150.250 27 110 4.0E-22 T 13-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily AMF_826 f1c9cea461b1137be0a71a42cd231ed8 110 SUPERFAMILY SSF109910 28 104 1.57E-20 T 13-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily AMF_826 f1c9cea461b1137be0a71a42cd231ed8 110 Pfam PF03937 Flavinator of succinate dehydrogenase 32 103 1.8E-21 T 13-10-2018 IPR005631 Flavinator of succinate dehydrogenase AMF_592 514f5bae1542b9266842751eb9d002e3 389 Pfam PF13360 PQQ-like domain 80 314 2.2E-31 T 13-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMF_592 514f5bae1542b9266842751eb9d002e3 389 SUPERFAMILY SSF50998 57 378 6.47E-45 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMF_592 514f5bae1542b9266842751eb9d002e3 389 Gene3D G3DSA:2.130.10.10 52 388 6.9E-49 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMF_592 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 329 360 300.0 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_592 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 150 183 200.0 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_592 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 247 278 160.0 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_592 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 110 141 9.4 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_592 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 284 316 16.0 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_592 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 66 98 5.3 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_001 a07af0ae32537a03fa3826917fe645fe 166 Gene3D G3DSA:3.40.50.7700 1 165 2.2E-68 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AMF_001 a07af0ae32537a03fa3826917fe645fe 166 PIRSF PIRSF001338 3 165 8.3E-66 T 13-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 AMF_001 a07af0ae32537a03fa3826917fe645fe 166 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 8 161 31.523 T 13-10-2018 IPR033747 Class I PurE AMF_001 a07af0ae32537a03fa3826917fe645fe 166 SUPERFAMILY SSF52255 7 161 1.11E-62 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AMF_001 a07af0ae32537a03fa3826917fe645fe 166 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 8 158 4.1E-61 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMF_001 a07af0ae32537a03fa3826917fe645fe 166 SMART SM01001 6 157 3.4E-94 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMF_001 a07af0ae32537a03fa3826917fe645fe 166 Pfam PF00731 AIR carboxylase 7 153 7.3E-62 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 SMART SM00493 253 324 4.5E-8 T 13-10-2018 IPR006171 TOPRIM domain AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 PIRSF PIRSF002811 10 607 4.7E-139 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 TIGRFAM TIGR01391 dnaG: DNA primase 17 416 4.4E-108 T 13-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 SUPERFAMILY SSF57783 16 107 5.27E-30 T 13-10-2018 AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 Pfam PF13662 Toprim domain 254 321 1.3E-13 T 13-10-2018 IPR006171 TOPRIM domain AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 SUPERFAMILY SSF56731 117 423 3.66E-85 T 13-10-2018 AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 Gene3D G3DSA:3.90.980.10 113 234 5.3E-29 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 SMART SM00400 44 98 3.0E-29 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 Gene3D G3DSA:3.40.1360.10 235 360 1.5E-30 T 13-10-2018 AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 Hamap MF_00974 DNA primase [dnaG]. 11 607 23.115 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 245 3.6E-32 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 Pfam PF01807 CHC2 zinc finger 15 107 6.3E-32 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMF_361 4a47347b9b6d2102c9d62253f88855cc 612 Gene3D G3DSA:3.90.580.10 10 109 3.2E-32 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 AMF_413 0a519bb61c847ffb14ca349eb2a98585 427 PIRSF PIRSF000521 24 419 9.5E-33 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_413 0a519bb61c847ffb14ca349eb2a98585 427 Gene3D G3DSA:3.40.640.10 59 322 2.4E-137 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMF_413 0a519bb61c847ffb14ca349eb2a98585 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 272 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_413 0a519bb61c847ffb14ca349eb2a98585 427 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 11 416 5.2E-143 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AMF_413 0a519bb61c847ffb14ca349eb2a98585 427 Pfam PF00202 Aminotransferase class-III 26 412 4.4E-108 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_413 0a519bb61c847ffb14ca349eb2a98585 427 Gene3D G3DSA:3.90.1150.10 10 409 2.4E-137 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMF_413 0a519bb61c847ffb14ca349eb2a98585 427 SUPERFAMILY SSF53383 7 414 1.75E-113 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMF_977 01ef4dd663c3d6686f433158753c3478 694 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 306 322 4.3E-17 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_977 01ef4dd663c3d6686f433158753c3478 694 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 6 19 4.3E-17 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_977 01ef4dd663c3d6686f433158753c3478 694 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 383 402 4.3E-17 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_977 01ef4dd663c3d6686f433158753c3478 694 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 238 253 4.3E-17 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_977 01ef4dd663c3d6686f433158753c3478 694 Pfam PF05746 DALR anticodon binding domain 579 680 1.5E-5 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMF_977 01ef4dd663c3d6686f433158753c3478 694 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 2 690 19.019 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_977 01ef4dd663c3d6686f433158753c3478 694 SUPERFAMILY SSF109604 327 472 2.2E-11 T 13-10-2018 AMF_977 01ef4dd663c3d6686f433158753c3478 694 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 690 3.2E-132 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_977 01ef4dd663c3d6686f433158753c3478 694 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 5 550 4.6E-146 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_753 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 91 118 2.6E-27 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMF_753 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 208 232 2.6E-27 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMF_753 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 233 257 2.6E-27 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMF_753 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 41 58 2.6E-27 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMF_753 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 275 292 2.6E-27 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMF_753 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 168 188 2.6E-27 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMF_753 263dafa4450f95e436dd42fcef999db2 371 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 38 192 2.4E-39 T 13-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMF_753 263dafa4450f95e436dd42fcef999db2 371 PIRSF PIRSF000114 32 368 1.3E-85 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMF_753 263dafa4450f95e436dd42fcef999db2 371 SUPERFAMILY SSF51735 38 215 3.94E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_753 263dafa4450f95e436dd42fcef999db2 371 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 223 244 - T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMF_753 263dafa4450f95e436dd42fcef999db2 371 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 215 356 1.5E-34 T 13-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMF_753 263dafa4450f95e436dd42fcef999db2 371 Gene3D G3DSA:3.40.50.720 26 222 8.4E-50 T 13-10-2018 AMF_753 263dafa4450f95e436dd42fcef999db2 371 SUPERFAMILY SSF48179 215 368 2.72E-36 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMF_753 263dafa4450f95e436dd42fcef999db2 371 Gene3D G3DSA:1.10.1040.10 224 370 7.5E-34 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMF_753 263dafa4450f95e436dd42fcef999db2 371 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 37 359 28.282 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMF_042 f0723bca5052935a3ee822bf39dafb82 351 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 46 339 4.7E-102 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMF_042 f0723bca5052935a3ee822bf39dafb82 351 SUPERFAMILY SSF46589 23 107 5.23E-13 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMF_042 f0723bca5052935a3ee822bf39dafb82 351 SUPERFAMILY SSF55681 100 341 8.23E-76 T 13-10-2018 AMF_042 f0723bca5052935a3ee822bf39dafb82 351 Pfam PF01409 tRNA synthetases class II core domain (F) 100 339 1.5E-99 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 AMF_042 f0723bca5052935a3ee822bf39dafb82 351 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 15 340 43.557 T 13-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 AMF_042 f0723bca5052935a3ee822bf39dafb82 351 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 27 95 6.6E-14 T 13-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMF_042 f0723bca5052935a3ee822bf39dafb82 351 Gene3D G3DSA:3.30.930.10 14 341 1.0E-111 T 13-10-2018 AMF_718 3d3735524d132184debb74c15666f019 462 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 88.188 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMF_718 3d3735524d132184debb74c15666f019 462 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMF_718 3d3735524d132184debb74c15666f019 462 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 460 2.4E-223 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMF_718 3d3735524d132184debb74c15666f019 462 Gene3D G3DSA:1.20.200.10 138 405 2.5E-118 T 13-10-2018 AMF_718 3d3735524d132184debb74c15666f019 462 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 1.6E-35 T 13-10-2018 IPR000362 Fumarate lyase family AMF_718 3d3735524d132184debb74c15666f019 462 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 1.6E-35 T 13-10-2018 IPR000362 Fumarate lyase family AMF_718 3d3735524d132184debb74c15666f019 462 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 1.6E-35 T 13-10-2018 IPR000362 Fumarate lyase family AMF_718 3d3735524d132184debb74c15666f019 462 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 1.6E-35 T 13-10-2018 IPR000362 Fumarate lyase family AMF_718 3d3735524d132184debb74c15666f019 462 Gene3D G3DSA:1.10.275.10 4 137 7.3E-59 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal AMF_718 3d3735524d132184debb74c15666f019 462 Pfam PF10415 Fumarase C C-terminus 407 459 5.7E-20 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMF_718 3d3735524d132184debb74c15666f019 462 Pfam PF00206 Lyase 11 341 1.0E-111 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal AMF_718 3d3735524d132184debb74c15666f019 462 Gene3D G3DSA:1.10.40.30 407 461 4.1E-22 T 13-10-2018 AMF_718 3d3735524d132184debb74c15666f019 462 SUPERFAMILY SSF48557 3 459 1.23E-155 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMF_832 78534f8aa4e59b46af5d8c2e451c4cc1 147 PIRSF PIRSF000847 1 146 3.7E-36 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMF_832 78534f8aa4e59b46af5d8c2e451c4cc1 147 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 38 9.7E-11 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMF_832 78534f8aa4e59b46af5d8c2e451c4cc1 147 Gene3D G3DSA:1.20.120.1760 1 144 3.5E-11 T 13-10-2018 AMF_832 78534f8aa4e59b46af5d8c2e451c4cc1 147 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 143 2.6E-39 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMF_832 78534f8aa4e59b46af5d8c2e451c4cc1 147 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 16 38 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PIRSF PIRSF000350 2 450 1.8E-69 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 SUPERFAMILY SSF51905 4 345 2.99E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 Gene3D G3DSA:3.50.50.60 7 335 1.4E-99 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 272 288 9.7E-40 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 182 200 9.7E-40 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 9.7E-40 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 300 322 9.7E-40 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 9.7E-40 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 1.3E-70 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 350 371 1.3E-70 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 415 430 1.3E-70 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 287 1.3E-70 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 437 457 1.3E-70 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 315 322 1.3E-70 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 182 207 1.3E-70 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 1.3E-70 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.3E-70 T 13-10-2018 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 354 462 4.0E-30 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 Gene3D G3DSA:3.30.390.30 353 470 4.4E-36 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 335 2.8E-59 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 SUPERFAMILY SSF55424 350 466 1.89E-35 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 Gene3D G3DSA:3.50.50.60 156 279 1.4E-99 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_591 ce7dcbe100674487968ca41a67eca4d4 471 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 6 468 1.6E-140 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMF_1048 a86c1867621f0d5ca7439f0b39c8f2f5 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 13-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_1048 a86c1867621f0d5ca7439f0b39c8f2f5 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 42 9.4E-23 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1048 a86c1867621f0d5ca7439f0b39c8f2f5 44 Pfam PF00468 Ribosomal protein L34 1 43 5.2E-23 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1048 a86c1867621f0d5ca7439f0b39c8f2f5 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 14.881 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1048 a86c1867621f0d5ca7439f0b39c8f2f5 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 2.0E-14 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_100 81cdb188de390628a15f19bd6cf0da37 242 Pfam PF01259 SAICAR synthetase 8 235 1.5E-57 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_100 81cdb188de390628a15f19bd6cf0da37 242 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 5 238 29.123 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_100 81cdb188de390628a15f19bd6cf0da37 242 Gene3D G3DSA:3.30.200.20 8 235 1.5E-87 T 13-10-2018 AMF_100 81cdb188de390628a15f19bd6cf0da37 242 Gene3D G3DSA:3.30.470.20 86 224 1.5E-87 T 13-10-2018 AMF_100 81cdb188de390628a15f19bd6cf0da37 242 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 1 210 2.8E-61 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 AMF_100 81cdb188de390628a15f19bd6cf0da37 242 SUPERFAMILY SSF56104 5 236 3.6E-75 T 13-10-2018 AMF_100 81cdb188de390628a15f19bd6cf0da37 242 ProSitePatterns PS01058 SAICAR synthetase signature 2. 174 182 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMF_068 7b148ccdf5328282a5ab6be53805d525 67 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 8 67 13.202 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMF_068 7b148ccdf5328282a5ab6be53805d525 67 PIRSF PIRSF006488 2 67 1.8E-19 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMF_068 7b148ccdf5328282a5ab6be53805d525 67 Pfam PF02609 Exonuclease VII small subunit 9 59 4.2E-18 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMF_068 7b148ccdf5328282a5ab6be53805d525 67 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 9 63 5.1E-21 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMF_068 7b148ccdf5328282a5ab6be53805d525 67 Gene3D G3DSA:1.10.287.1040 5 67 6.4E-17 T 13-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 AMF_068 7b148ccdf5328282a5ab6be53805d525 67 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 26 47 2.0E-6 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMF_068 7b148ccdf5328282a5ab6be53805d525 67 SUPERFAMILY SSF116842 8 65 2.62E-17 T 13-10-2018 AMF_706 5632c6a2d0101e2b74033b6fe12343ee 350 SUPERFAMILY SSF53800 7 335 4.09E-89 T 13-10-2018 AMF_706 5632c6a2d0101e2b74033b6fe12343ee 350 Pfam PF00762 Ferrochelatase 8 321 5.6E-97 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMF_706 5632c6a2d0101e2b74033b6fe12343ee 350 Gene3D G3DSA:3.40.50.1400 8 320 2.5E-97 T 13-10-2018 AMF_706 5632c6a2d0101e2b74033b6fe12343ee 350 Hamap MF_00323 Ferrochelatase [hemH]. 7 324 30.816 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMF_706 5632c6a2d0101e2b74033b6fe12343ee 350 ProSitePatterns PS00534 Ferrochelatase signature. 196 214 - T 13-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMF_706 5632c6a2d0101e2b74033b6fe12343ee 350 Gene3D G3DSA:3.40.50.1400 167 305 2.5E-97 T 13-10-2018 AMF_706 5632c6a2d0101e2b74033b6fe12343ee 350 TIGRFAM TIGR00109 hemH: ferrochelatase 5 321 1.4E-78 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMF_276 5050d147df5d4036187c85a11b8c1654 645 SMART SM00387 34 190 0.0034 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMF_276 5050d147df5d4036187c85a11b8c1654 645 PIRSF PIRSF002583 6 645 7.7E-197 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMF_276 5050d147df5d4036187c85a11b8c1654 645 SUPERFAMILY SSF110942 524 640 5.36E-28 T 13-10-2018 IPR037196 HSP90, C-terminal domain AMF_276 5050d147df5d4036187c85a11b8c1654 645 Gene3D G3DSA:3.30.565.10 7 230 2.1E-72 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_276 5050d147df5d4036187c85a11b8c1654 645 Gene3D G3DSA:1.20.120.790 502 640 1.1E-31 T 13-10-2018 IPR037196 HSP90, C-terminal domain AMF_276 5050d147df5d4036187c85a11b8c1654 645 Pfam PF00183 Hsp90 protein 223 640 2.0E-105 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMF_276 5050d147df5d4036187c85a11b8c1654 645 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 37 159 1.0E-10 T 13-10-2018 AMF_276 5050d147df5d4036187c85a11b8c1654 645 PRINTS PR00775 90kDa heat shock protein signature 82 99 2.4E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMF_276 5050d147df5d4036187c85a11b8c1654 645 PRINTS PR00775 90kDa heat shock protein signature 100 117 2.4E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMF_276 5050d147df5d4036187c85a11b8c1654 645 PRINTS PR00775 90kDa heat shock protein signature 196 214 2.4E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMF_276 5050d147df5d4036187c85a11b8c1654 645 PRINTS PR00775 90kDa heat shock protein signature 178 195 2.4E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMF_276 5050d147df5d4036187c85a11b8c1654 645 PRINTS PR00775 90kDa heat shock protein signature 33 55 2.4E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMF_276 5050d147df5d4036187c85a11b8c1654 645 PRINTS PR00775 90kDa heat shock protein signature 12 32 2.4E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMF_276 5050d147df5d4036187c85a11b8c1654 645 PRINTS PR00775 90kDa heat shock protein signature 127 149 2.4E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal AMF_276 5050d147df5d4036187c85a11b8c1654 645 SUPERFAMILY SSF54211 231 484 1.37E-81 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_276 5050d147df5d4036187c85a11b8c1654 645 Hamap MF_00505 Chaperone protein HtpG [htpG]. 9 640 28.734 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 AMF_276 5050d147df5d4036187c85a11b8c1654 645 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 32 41 - T 13-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 AMF_276 5050d147df5d4036187c85a11b8c1654 645 Gene3D G3DSA:3.40.50.11260 398 486 7.9E-25 T 13-10-2018 AMF_276 5050d147df5d4036187c85a11b8c1654 645 SUPERFAMILY SSF55874 12 218 7.6E-60 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_276 5050d147df5d4036187c85a11b8c1654 645 Gene3D G3DSA:3.30.230.80 231 397 2.5E-56 T 13-10-2018 AMF_064 67fa8c98b0ed73e681543c2ba07b4eda 282 Gene3D G3DSA:2.40.160.20 74 257 1.6E-19 T 13-10-2018 AMF_064 67fa8c98b0ed73e681543c2ba07b4eda 282 Pfam PF01617 Surface antigen 43 281 7.2E-90 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_064 67fa8c98b0ed73e681543c2ba07b4eda 282 SUPERFAMILY SSF56925 45 281 1.57E-22 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_782 f5a835dcb734f46611c1c4571c145ded 343 Gene3D G3DSA:3.40.50.300 79 333 3.7E-67 T 13-10-2018 AMF_782 f5a835dcb734f46611c1c4571c145ded 343 ProSitePatterns PS01215 Mrp family signature. 201 217 - T 13-10-2018 IPR000808 Mrp, conserved site GO:0005524 AMF_782 f5a835dcb734f46611c1c4571c145ded 343 Hamap MF_02040 Iron-sulfur cluster carrier protein. 89 334 31.12 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein AMF_782 f5a835dcb734f46611c1c4571c145ded 343 SUPERFAMILY SSF52540 96 312 4.07E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_782 f5a835dcb734f46611c1c4571c145ded 343 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 94 333 1.6E-81 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 AMF_782 f5a835dcb734f46611c1c4571c145ded 343 SUPERFAMILY SSF117916 1 90 4.25E-6 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMF_623 0806f05b38c44d28944f19a95880e26a 175 Gene3D G3DSA:2.40.70.10 52 173 3.5E-33 T 13-10-2018 IPR021109 Aspartic peptidase domain superfamily AMF_623 0806f05b38c44d28944f19a95880e26a 175 Pfam PF13975 gag-polyprotein putative aspartyl protease 72 160 7.9E-24 T 13-10-2018 AMF_623 0806f05b38c44d28944f19a95880e26a 175 SUPERFAMILY SSF50630 60 164 2.36E-20 T 13-10-2018 IPR021109 Aspartic peptidase domain superfamily AMF_623 0806f05b38c44d28944f19a95880e26a 175 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 57 173 1.0E-38 T 13-10-2018 IPR011969 Clan AA aspartic peptidase, C-terminal AMF_623 0806f05b38c44d28944f19a95880e26a 175 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 80 91 - T 13-10-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 AMF_501 7b53cdad313475867b99ab9189dc1dec 485 Gene3D G3DSA:1.10.357.20 311 485 2.0E-45 T 13-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain AMF_501 7b53cdad313475867b99ab9189dc1dec 485 Gene3D G3DSA:1.25.60.10 43 170 3.3E-12 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily AMF_501 7b53cdad313475867b99ab9189dc1dec 485 SMART SM00116 246 294 5.4E-7 T 13-10-2018 IPR000644 CBS domain AMF_501 7b53cdad313475867b99ab9189dc1dec 485 SMART SM00116 182 235 13.0 T 13-10-2018 IPR000644 CBS domain AMF_501 7b53cdad313475867b99ab9189dc1dec 485 SUPERFAMILY SSF54631 175 307 1.89E-23 T 13-10-2018 AMF_501 7b53cdad313475867b99ab9189dc1dec 485 TIGRFAM TIGR00400 mgtE: magnesium transporter 57 483 4.1E-80 T 13-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 AMF_501 7b53cdad313475867b99ab9189dc1dec 485 SMART SM00924 72 175 3.6E-24 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AMF_501 7b53cdad313475867b99ab9189dc1dec 485 SUPERFAMILY SSF158791 47 172 4.05E-20 T 13-10-2018 AMF_501 7b53cdad313475867b99ab9189dc1dec 485 Gene3D G3DSA:3.10.580.10 171 298 3.1E-30 T 13-10-2018 AMF_501 7b53cdad313475867b99ab9189dc1dec 485 Pfam PF00571 CBS domain 177 233 0.0064 T 13-10-2018 IPR000644 CBS domain AMF_501 7b53cdad313475867b99ab9189dc1dec 485 Pfam PF00571 CBS domain 239 293 1.5E-7 T 13-10-2018 IPR000644 CBS domain AMF_501 7b53cdad313475867b99ab9189dc1dec 485 SUPERFAMILY SSF161093 315 484 8.89E-42 T 13-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 AMF_501 7b53cdad313475867b99ab9189dc1dec 485 Pfam PF03448 MgtE intracellular N domain 75 173 4.5E-17 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AMF_501 7b53cdad313475867b99ab9189dc1dec 485 Pfam PF01769 Divalent cation transporter 358 479 3.7E-21 T 13-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AMF_617 86fb0377b9ae0e12485350c53f7b1e21 134 TIGRFAM TIGR00009 L28: ribosomal protein bL28 33 89 5.8E-18 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_617 86fb0377b9ae0e12485350c53f7b1e21 134 Gene3D G3DSA:2.30.170.40 39 130 6.5E-25 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_617 86fb0377b9ae0e12485350c53f7b1e21 134 Pfam PF00830 Ribosomal L28 family 34 91 4.6E-21 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_617 86fb0377b9ae0e12485350c53f7b1e21 134 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 32 99 17.36 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_617 86fb0377b9ae0e12485350c53f7b1e21 134 SUPERFAMILY SSF143800 32 114 2.75E-22 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 33 779 7.2E-203 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 Pfam PF01103 Surface antigen 457 776 2.0E-52 T 13-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 PIRSF PIRSF006076 3 779 1.3E-203 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 8 782 21.023 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 Gene3D G3DSA:3.10.20.310 180 274 2.4E-16 T 13-10-2018 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 Gene3D G3DSA:3.10.20.310 359 433 8.0E-21 T 13-10-2018 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 Gene3D G3DSA:3.10.20.310 99 178 2.2E-16 T 13-10-2018 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 Gene3D G3DSA:2.40.160.50 434 780 3.6E-72 T 13-10-2018 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 Gene3D G3DSA:3.10.20.310 29 98 1.2E-11 T 13-10-2018 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 Pfam PF07244 Surface antigen variable number repeat 181 271 1.7E-11 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 Pfam PF07244 Surface antigen variable number repeat 99 177 4.3E-10 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMF_828 856a58ed1c73f661af8c9ac04a2d4575 782 Pfam PF07244 Surface antigen variable number repeat 358 430 8.8E-13 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMF_250 996376b50d82f7514d7cb18418f212e2 387 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 30 378 3.5E-103 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMF_250 996376b50d82f7514d7cb18418f212e2 387 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 29 379 38.163 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMF_250 996376b50d82f7514d7cb18418f212e2 387 Gene3D G3DSA:2.40.30.10 300 383 1.1E-13 T 13-10-2018 AMF_250 996376b50d82f7514d7cb18418f212e2 387 SUPERFAMILY SSF52402 29 270 1.7E-50 T 13-10-2018 AMF_250 996376b50d82f7514d7cb18418f212e2 387 Gene3D G3DSA:3.40.50.620 22 235 1.8E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_250 996376b50d82f7514d7cb18418f212e2 387 Gene3D G3DSA:2.30.30.280 241 299 3.1E-17 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMF_250 996376b50d82f7514d7cb18418f212e2 387 Pfam PF03054 tRNA methyl transferase 30 378 7.5E-114 T 13-10-2018 AMF_360 f0a36baa0e9296b721443238fc4d869c 343 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 59 283 1.1E-53 T 13-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 AMF_360 f0a36baa0e9296b721443238fc4d869c 343 SUPERFAMILY SSF53335 11 339 3.03E-100 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_360 f0a36baa0e9296b721443238fc4d869c 343 Gene3D G3DSA:3.40.50.12710 4 343 9.4E-94 T 13-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 AMF_207 e145cbf7a7216e16997b56b4c8e8736c 218 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 46 123 1.6E-20 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMF_207 e145cbf7a7216e16997b56b4c8e8736c 218 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 187 200 - T 13-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMF_207 e145cbf7a7216e16997b56b4c8e8736c 218 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 21 218 6.9E-65 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMF_207 e145cbf7a7216e16997b56b4c8e8736c 218 Gene3D G3DSA:2.30.110.10 18 218 2.6E-66 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMF_207 e145cbf7a7216e16997b56b4c8e8736c 218 PIRSF PIRSF000190 17 218 1.5E-66 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMF_207 e145cbf7a7216e16997b56b4c8e8736c 218 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 177 218 2.0E-13 T 13-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMF_207 e145cbf7a7216e16997b56b4c8e8736c 218 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 14 218 34.759 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMF_207 e145cbf7a7216e16997b56b4c8e8736c 218 SUPERFAMILY SSF50475 23 218 7.3E-56 T 13-10-2018 AMF_972 5b6c1e073dcb82fad5a461eae0808d23 383 Pfam PF01098 Cell cycle protein 35 372 1.5E-64 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 9 317 5.3E-121 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 ProSitePatterns PS00802 Transketolase signature 2. 462 478 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 SUPERFAMILY SSF52922 529 657 4.06E-41 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 Gene3D G3DSA:3.40.50.970 4 321 2.1E-109 T 13-10-2018 AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 SUPERFAMILY SSF52518 344 518 1.01E-65 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 Pfam PF02779 Transketolase, pyrimidine binding domain 350 518 1.3E-42 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 Gene3D G3DSA:3.40.50.970 323 523 2.8E-71 T 13-10-2018 AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 Pfam PF02780 Transketolase, C-terminal domain 542 649 5.1E-10 T 13-10-2018 IPR033248 Transketolase, C-terminal domain AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 SMART SM00861 349 520 1.8E-63 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 SUPERFAMILY SSF52518 7 311 7.17E-110 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 Gene3D G3DSA:3.40.50.920 533 656 5.9E-39 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 TIGRFAM TIGR00232 tktlase_bact: transketolase 10 652 7.7E-238 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AMF_638 cb165fb17c06ee6e801c66fa450cc544 661 ProSitePatterns PS00801 Transketolase signature 1. 15 35 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMF_962 34d48b61a414c022ab294a9a0cb9ebfd 177 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 8 72 3.6E-22 T 13-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMF_962 34d48b61a414c022ab294a9a0cb9ebfd 177 SUPERFAMILY SSF55200 84 166 7.72E-27 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMF_962 34d48b61a414c022ab294a9a0cb9ebfd 177 Gene3D G3DSA:3.10.20.80 3 78 3.2E-23 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMF_962 34d48b61a414c022ab294a9a0cb9ebfd 177 SUPERFAMILY SSF54364 5 73 1.44E-21 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMF_962 34d48b61a414c022ab294a9a0cb9ebfd 177 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 83 165 9.0E-29 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 AMF_962 34d48b61a414c022ab294a9a0cb9ebfd 177 Gene3D G3DSA:3.30.110.10 79 173 3.8E-28 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMF_962 34d48b61a414c022ab294a9a0cb9ebfd 177 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 8 166 2.5E-44 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMF_310 3f41d1d4da76e6575898f2ac562f871f 179 PIRSF PIRSF002070 13 170 2.0E-32 T 13-10-2018 AMF_310 3f41d1d4da76e6575898f2ac562f871f 179 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 16 179 4.3E-40 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMF_310 3f41d1d4da76e6575898f2ac562f871f 179 Hamap MF_00984 Single-stranded DNA-binding protein. 17 130 30.68 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMF_310 3f41d1d4da76e6575898f2ac562f871f 179 SUPERFAMILY SSF50249 16 179 4.46E-42 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_310 3f41d1d4da76e6575898f2ac562f871f 179 Pfam PF00436 Single-strand binding protein family 17 117 4.4E-34 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AMF_310 3f41d1d4da76e6575898f2ac562f871f 179 Gene3D G3DSA:2.40.50.140 13 130 2.3E-41 T 13-10-2018 AMF_641 229df4a632b5c409d6439262d7aa4e96 445 Pfam PF00709 Adenylosuccinate synthetase 23 441 4.7E-154 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMF_641 229df4a632b5c409d6439262d7aa4e96 445 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 152 163 - T 13-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMF_641 229df4a632b5c409d6439262d7aa4e96 445 Gene3D G3DSA:3.40.440.10 24 274 1.9E-84 T 13-10-2018 AMF_641 229df4a632b5c409d6439262d7aa4e96 445 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 445 171.715 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMF_641 229df4a632b5c409d6439262d7aa4e96 445 SMART SM00788 22 442 3.2E-244 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMF_641 229df4a632b5c409d6439262d7aa4e96 445 Gene3D G3DSA:3.90.170.10 285 444 8.2E-59 T 13-10-2018 AMF_641 229df4a632b5c409d6439262d7aa4e96 445 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 24 441 5.0E-140 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMF_641 229df4a632b5c409d6439262d7aa4e96 445 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 29 36 - T 13-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMF_641 229df4a632b5c409d6439262d7aa4e96 445 Gene3D G3DSA:1.10.300.10 127 225 1.9E-84 T 13-10-2018 AMF_641 229df4a632b5c409d6439262d7aa4e96 445 SUPERFAMILY SSF52540 19 441 2.02E-154 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_816 b8d5cb9e24c26a2a6d80a97b87981b8d 170 Pfam PF01252 Signal peptidase (SPase) II 11 145 1.2E-31 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMF_816 b8d5cb9e24c26a2a6d80a97b87981b8d 170 TIGRFAM TIGR00077 lspA: signal peptidase II 8 152 3.3E-27 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMF_816 b8d5cb9e24c26a2a6d80a97b87981b8d 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 93 108 4.7E-13 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMF_816 b8d5cb9e24c26a2a6d80a97b87981b8d 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 48 56 4.7E-13 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMF_816 b8d5cb9e24c26a2a6d80a97b87981b8d 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 129 145 4.7E-13 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMF_816 b8d5cb9e24c26a2a6d80a97b87981b8d 170 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 2 154 13.736 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMF_031 1f82f24457f32dcbe8f9cf580e2488eb 401 SUPERFAMILY SSF109998 27 179 8.24E-19 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMF_031 1f82f24457f32dcbe8f9cf580e2488eb 401 Gene3D G3DSA:1.10.4030.30 26 257 7.9E-17 T 13-10-2018 AMF_031 1f82f24457f32dcbe8f9cf580e2488eb 401 Gene3D G3DSA:3.10.50.40 166 256 7.9E-17 T 13-10-2018 AMF_031 1f82f24457f32dcbe8f9cf580e2488eb 401 SUPERFAMILY SSF54534 177 257 1.37E-6 T 13-10-2018 AMF_885 76ff12955b3dc5bd313f573cfe2bc8b2 210 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 16 206 1.8E-70 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMF_885 76ff12955b3dc5bd313f573cfe2bc8b2 210 Gene3D G3DSA:3.90.870.10 5 210 7.5E-75 T 13-10-2018 AMF_885 76ff12955b3dc5bd313f573cfe2bc8b2 210 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 11 206 2.0E-62 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMF_885 76ff12955b3dc5bd313f573cfe2bc8b2 210 SUPERFAMILY SSF55821 10 208 1.65E-74 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMF_328 c90128135941e234064b73672ca8521b 264 Gene3D G3DSA:3.20.20.140 3 261 5.3E-81 T 13-10-2018 AMF_328 c90128135941e234064b73672ca8521b 264 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 4 255 1.2E-80 T 13-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 AMF_328 c90128135941e234064b73672ca8521b 264 Pfam PF01026 TatD related DNase 5 254 8.8E-72 T 13-10-2018 IPR001130 TatD family GO:0016788 AMF_328 c90128135941e234064b73672ca8521b 264 PIRSF PIRSF005902 2 258 1.3E-72 T 13-10-2018 IPR001130 TatD family GO:0016788 AMF_328 c90128135941e234064b73672ca8521b 264 SUPERFAMILY SSF51556 4 255 1.42E-77 T 13-10-2018 IPR032466 Metal-dependent hydrolase AMF_328 c90128135941e234064b73672ca8521b 264 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 4 12 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AMF_245 8864cc34cb24dc1fcafd695b8879a56a 283 SUPERFAMILY SSF74653 186 280 2.55E-10 T 13-10-2018 AMF_245 8864cc34cb24dc1fcafd695b8879a56a 283 Gene3D G3DSA:3.30.1150.10 165 281 8.1E-18 T 13-10-2018 AMF_063 6d80a6ab7265dd3787895d834eee6eee 268 SUPERFAMILY SSF69572 10 250 2.35E-78 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 AMF_063 6d80a6ab7265dd3787895d834eee6eee 268 Pfam PF00899 ThiF family 12 247 1.0E-63 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMF_063 6d80a6ab7265dd3787895d834eee6eee 268 Gene3D G3DSA:3.40.50.720 7 253 1.4E-79 T 13-10-2018 AMF_524 dbcf2fc9b37c541116955e7f5bebc1dd 299 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 197 294 2.2E-28 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_524 dbcf2fc9b37c541116955e7f5bebc1dd 299 Pfam PF01565 FAD binding domain 36 163 3.1E-18 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMF_524 dbcf2fc9b37c541116955e7f5bebc1dd 299 SUPERFAMILY SSF56176 23 205 6.18E-40 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMF_524 dbcf2fc9b37c541116955e7f5bebc1dd 299 Gene3D G3DSA:3.90.78.10 213 298 2.4E-32 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_524 dbcf2fc9b37c541116955e7f5bebc1dd 299 Gene3D G3DSA:3.30.465.10 87 212 5.7E-35 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMF_524 dbcf2fc9b37c541116955e7f5bebc1dd 299 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 24 296 2.6E-57 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_524 dbcf2fc9b37c541116955e7f5bebc1dd 299 Gene3D G3DSA:3.30.43.10 7 83 2.6E-15 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMF_524 dbcf2fc9b37c541116955e7f5bebc1dd 299 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 299 85.096 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_524 dbcf2fc9b37c541116955e7f5bebc1dd 299 SUPERFAMILY SSF56194 192 297 3.14E-37 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_106 1e767797883c8114d1db7bc295360065 428 Gene3D G3DSA:3.65.10.10 24 239 9.8E-153 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMF_106 1e767797883c8114d1db7bc295360065 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 13 417 6.9E-86 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AMF_106 1e767797883c8114d1db7bc295360065 428 Gene3D G3DSA:3.65.10.10 13 424 9.8E-153 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMF_106 1e767797883c8114d1db7bc295360065 428 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 6 425 1.0E-148 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_106 1e767797883c8114d1db7bc295360065 428 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 3 427 39.778 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_106 1e767797883c8114d1db7bc295360065 428 SUPERFAMILY SSF55205 11 427 8.83E-118 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMF_1012 567db61d3033a057f4624cbc50e9e486 699 SMART SM00487 280 468 2.1E-31 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMF_1012 567db61d3033a057f4624cbc50e9e486 699 Gene3D G3DSA:3.40.50.300 466 636 9.2E-45 T 13-10-2018 AMF_1012 567db61d3033a057f4624cbc50e9e486 699 SUPERFAMILY SSF50249 41 199 3.6E-13 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_1012 567db61d3033a057f4624cbc50e9e486 699 Gene3D G3DSA:2.40.50.140 67 167 3.8E-8 T 13-10-2018 AMF_1012 567db61d3033a057f4624cbc50e9e486 699 Pfam PF00270 DEAD/DEAH box helicase 285 446 7.0E-18 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMF_1012 567db61d3033a057f4624cbc50e9e486 699 SMART SM00490 517 596 9.2E-18 T 13-10-2018 IPR001650 Helicase, C-terminal AMF_1012 567db61d3033a057f4624cbc50e9e486 699 Gene3D G3DSA:3.40.50.300 232 457 1.4E-72 T 13-10-2018 AMF_1012 567db61d3033a057f4624cbc50e9e486 699 SUPERFAMILY SSF52540 401 606 8.17E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_1012 567db61d3033a057f4624cbc50e9e486 699 Pfam PF00271 Helicase conserved C-terminal domain 486 595 3.9E-16 T 13-10-2018 IPR001650 Helicase, C-terminal AMF_1012 567db61d3033a057f4624cbc50e9e486 699 SUPERFAMILY SSF52540 202 461 2.73E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_133 20b042823a31a5bdc9770c63aa0fbcfc 370 Gene3D G3DSA:3.20.20.370 105 330 1.2E-40 T 13-10-2018 AMF_133 20b042823a31a5bdc9770c63aa0fbcfc 370 Pfam PF01522 Polysaccharide deacetylase 117 217 1.1E-13 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMF_133 20b042823a31a5bdc9770c63aa0fbcfc 370 SUPERFAMILY SSF88713 115 326 1.56E-33 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 Pfam PF03147 Ferredoxin-fold anticodon binding domain 695 785 1.4E-16 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 SUPERFAMILY SSF55681 465 680 1.99E-38 T 13-10-2018 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 Gene3D G3DSA:3.30.56.10 5 180 6.8E-49 T 13-10-2018 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 SMART SM00874 399 469 1.9E-20 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 SUPERFAMILY SSF56037 209 393 6.8E-60 T 13-10-2018 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 Pfam PF03484 tRNA synthetase B5 domain 411 469 8.7E-16 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 SMART SM00873 208 382 9.7E-64 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 Gene3D G3DSA:3.30.930.10 486 680 2.4E-45 T 13-10-2018 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 SUPERFAMILY SSF50249 42 191 9.14E-30 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 SUPERFAMILY SSF54991 694 785 1.09E-19 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 Gene3D G3DSA:2.40.50.140 38 153 6.8E-49 T 13-10-2018 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 Pfam PF01588 Putative tRNA binding domain 44 147 2.4E-21 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 SMART SM00896 695 785 1.6E-25 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 2 785 5.6E-195 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 Pfam PF03483 B3/4 domain 212 382 6.2E-55 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 Gene3D G3DSA:3.50.40.10 201 391 5.7E-55 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 Gene3D G3DSA:3.30.56.10 398 472 2.8E-17 T 13-10-2018 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 SUPERFAMILY SSF46955 400 473 2.29E-13 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 Gene3D G3DSA:3.30.70.380 695 786 2.7E-17 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AMF_670 a6272dd3cb35c2146dd84f544e6214ce 787 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 779 35.424 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMF_726 e8de16e374ed2236717f294998ee8f9c 243 Pfam PF00106 short chain dehydrogenase 8 202 7.2E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_726 e8de16e374ed2236717f294998ee8f9c 243 Gene3D G3DSA:3.40.50.720 1 241 6.7E-63 T 13-10-2018 AMF_726 e8de16e374ed2236717f294998ee8f9c 243 SUPERFAMILY SSF51735 3 238 1.72E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_726 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 4.2E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_726 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 4.2E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_726 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.2E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_726 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.2E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_726 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 4.2E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_726 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 4.2E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_726 e8de16e374ed2236717f294998ee8f9c 243 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMF_175 85865eb45b19c41711e8e0934aef5639 512 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 361 382 1.7E-33 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMF_175 85865eb45b19c41711e8e0934aef5639 512 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 86 109 1.7E-33 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMF_175 85865eb45b19c41711e8e0934aef5639 512 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 491 511 1.7E-33 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMF_175 85865eb45b19c41711e8e0934aef5639 512 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 476 491 1.7E-33 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMF_175 85865eb45b19c41711e8e0934aef5639 512 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 128 148 1.7E-33 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMF_175 85865eb45b19c41711e8e0934aef5639 512 Pfam PF13437 HlyD family secretion protein 348 425 8.0E-8 T 13-10-2018 AMF_175 85865eb45b19c41711e8e0934aef5639 512 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 79 512 3.1E-115 T 13-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AMF_134 91737b19d1290773d739a6f696ed5f90 299 SUPERFAMILY SSF53223 3 121 3.07E-40 T 13-10-2018 AMF_134 91737b19d1290773d739a6f696ed5f90 299 Gene3D G3DSA:3.40.50.720 5 262 5.0E-105 T 13-10-2018 AMF_134 91737b19d1290773d739a6f696ed5f90 299 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 2.9E-39 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 SUPERFAMILY SSF51735 122 280 2.02E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_134 91737b19d1290773d739a6f696ed5f90 299 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 263 271 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 75 100 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 282 6.6E-63 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.3E-79 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 1.3E-79 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 242 258 1.3E-79 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 259 277 1.3E-79 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 1.3E-79 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 1.3E-79 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.3E-79 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 286 37.347 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMF_134 91737b19d1290773d739a6f696ed5f90 299 Gene3D G3DSA:3.40.50.10860 7 279 5.0E-105 T 13-10-2018 AMF_607 62e4adf98ce44bdae58780800fa6d30d 105 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 15 97 8.8E-24 T 13-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB AMF_289 327ceab63f773fe5e4fa206d9c11757f 483 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 33 410 3.3E-147 T 13-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 AMF_289 327ceab63f773fe5e4fa206d9c11757f 483 Gene3D G3DSA:1.10.510.10 239 373 2.3E-6 T 13-10-2018 AMF_289 327ceab63f773fe5e4fa206d9c11757f 483 Pfam PF03109 ABC1 family 99 215 3.5E-28 T 13-10-2018 IPR004147 UbiB domain AMF_289 327ceab63f773fe5e4fa206d9c11757f 483 SUPERFAMILY SSF56112 81 404 2.11E-32 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily AMF_941 6a0c5b438919751892da2e3abb4eec98 651 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 648 1.3E-292 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AMF_941 6a0c5b438919751892da2e3abb4eec98 651 SMART SM00487 8 423 1.2E-19 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMF_941 6a0c5b438919751892da2e3abb4eec98 651 SUPERFAMILY SSF46600 616 649 3.53E-7 T 13-10-2018 IPR036876 UVR domain superfamily AMF_941 6a0c5b438919751892da2e3abb4eec98 651 Gene3D G3DSA:3.40.50.300 413 594 1.1E-47 T 13-10-2018 AMF_941 6a0c5b438919751892da2e3abb4eec98 651 Pfam PF02151 UvrB/uvrC motif 619 648 2.3E-7 T 13-10-2018 IPR001943 UVR domain GO:0005515 AMF_941 6a0c5b438919751892da2e3abb4eec98 651 Gene3D G3DSA:3.40.50.300 270 412 7.7E-48 T 13-10-2018 AMF_941 6a0c5b438919751892da2e3abb4eec98 651 Pfam PF00271 Helicase conserved C-terminal domain 442 542 1.1E-17 T 13-10-2018 IPR001650 Helicase, C-terminal AMF_941 6a0c5b438919751892da2e3abb4eec98 651 SUPERFAMILY SSF52540 2 411 1.41E-123 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_941 6a0c5b438919751892da2e3abb4eec98 651 Pfam PF12344 Ultra-violet resistance protein B 550 591 1.9E-19 T 13-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain AMF_941 6a0c5b438919751892da2e3abb4eec98 651 SMART SM00490 458 544 1.8E-19 T 13-10-2018 IPR001650 Helicase, C-terminal AMF_941 6a0c5b438919751892da2e3abb4eec98 651 Gene3D G3DSA:3.40.50.300 1 240 3.0E-76 T 13-10-2018 AMF_941 6a0c5b438919751892da2e3abb4eec98 651 Pfam PF04851 Type III restriction enzyme, res subunit 12 91 1.0E-7 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMF_941 6a0c5b438919751892da2e3abb4eec98 651 SUPERFAMILY SSF52540 36 571 3.33E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_941 6a0c5b438919751892da2e3abb4eec98 651 Gene3D G3DSA:4.10.860.10 602 650 9.7E-6 T 13-10-2018 AMF_941 6a0c5b438919751892da2e3abb4eec98 651 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 651 40.572 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AMF_172 915e9a429317672c75fd04bd52c5fbce 338 SUPERFAMILY SSF51412 13 332 2.59E-49 T 13-10-2018 AMF_172 915e9a429317672c75fd04bd52c5fbce 338 Gene3D G3DSA:3.20.20.70 10 337 1.4E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_172 915e9a429317672c75fd04bd52c5fbce 338 Pfam PF03060 Nitronate monooxygenase 83 328 1.7E-30 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMF_858 348b272c7c3bd91f69e0c876c230dc09 419 SUPERFAMILY SSF81301 8 144 1.2E-39 T 13-10-2018 AMF_858 348b272c7c3bd91f69e0c876c230dc09 419 Gene3D G3DSA:3.30.460.10 3 144 8.3E-43 T 13-10-2018 AMF_858 348b272c7c3bd91f69e0c876c230dc09 419 Gene3D G3DSA:1.10.3090.10 146 350 1.9E-27 T 13-10-2018 AMF_858 348b272c7c3bd91f69e0c876c230dc09 419 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 188 233 2.2E-8 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMF_858 348b272c7c3bd91f69e0c876c230dc09 419 SUPERFAMILY SSF81891 146 401 2.62E-43 T 13-10-2018 AMF_858 348b272c7c3bd91f69e0c876c230dc09 419 Pfam PF01743 Poly A polymerase head domain 25 146 8.5E-30 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMF_293 6ecf93d8f01a58c24d0d66601b11a50c 880 Pfam PF13550 Putative phage tail protein 694 848 1.0E-24 T 13-10-2018 IPR032876 Tip attachment protein J AMF_293 6ecf93d8f01a58c24d0d66601b11a50c 880 SUPERFAMILY SSF51445 430 634 3.25E-7 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily AMF_293 6ecf93d8f01a58c24d0d66601b11a50c 880 Pfam PF13547 GTA TIM-barrel-like domain 390 619 1.7E-38 T 13-10-2018 IPR025195 GTA TIM-barrel-like domain AMF_682 714f79e97438e9bca4071071808e6424 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_682 714f79e97438e9bca4071071808e6424 132 SUPERFAMILY SSF56047 3 132 4.19E-41 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_682 714f79e97438e9bca4071071808e6424 132 Gene3D G3DSA:3.30.1370.30 4 78 6.8E-21 T 13-10-2018 AMF_682 714f79e97438e9bca4071071808e6424 132 Pfam PF00410 Ribosomal protein S8 5 132 2.5E-42 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_682 714f79e97438e9bca4071071808e6424 132 Gene3D G3DSA:3.30.1490.10 79 132 8.6E-22 T 13-10-2018 AMF_682 714f79e97438e9bca4071071808e6424 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 29.338 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 SUPERFAMILY SSF51905 7 447 3.24E-81 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 SUPERFAMILY SSF56425 245 363 6.13E-44 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 Gene3D G3DSA:4.10.80.40 550 599 5.6E-12 T 13-10-2018 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 16 599 4.2E-250 T 13-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 50 59 - T 13-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 SUPERFAMILY SSF46977 457 599 4.06E-49 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 Gene3D G3DSA:1.20.58.100 437 549 2.1E-38 T 13-10-2018 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 13 599 2.4E-291 T 13-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 PIRSF PIRSF000171 6 589 2.7E-43 T 13-10-2018 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 Pfam PF00890 FAD binding domain 16 410 6.2E-128 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 Pfam PF02910 Fumarate reductase flavoprotein C-term 465 599 3.0E-44 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 Gene3D G3DSA:3.90.700.10 255 358 5.2E-170 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_125 f2c1003dc693ce376fc56f771c7f7133 599 Gene3D G3DSA:3.50.50.60 16 421 5.2E-170 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_850 7e0b1eaf8ffc0fba890a3649e9f47a10 317 SUPERFAMILY SSF161111 32 228 5.62E-50 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMF_850 7e0b1eaf8ffc0fba890a3649e9f47a10 317 Gene3D G3DSA:1.20.1510.10 32 227 6.7E-39 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMF_850 7e0b1eaf8ffc0fba890a3649e9f47a10 317 Pfam PF01545 Cation efflux family 38 227 3.3E-42 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMF_850 7e0b1eaf8ffc0fba890a3649e9f47a10 317 SUPERFAMILY SSF160240 231 310 1.96E-10 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 AMF_850 7e0b1eaf8ffc0fba890a3649e9f47a10 317 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 33 309 5.2E-81 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMF_822 edf5708520647d4ce124d61962107986 191 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 39 68 0.0019 T 13-10-2018 IPR001451 Hexapeptide repeat AMF_822 edf5708520647d4ce124d61962107986 191 Gene3D G3DSA:2.160.10.10 25 191 1.2E-48 T 13-10-2018 AMF_822 edf5708520647d4ce124d61962107986 191 SUPERFAMILY SSF51161 28 188 5.54E-40 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily AMF_329 f4c458c83277407d1b21e690ca3a186f 239 SUPERFAMILY SSF51366 8 236 6.48E-65 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMF_329 f4c458c83277407d1b21e690ca3a186f 239 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 18 232 3.0E-47 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_329 f4c458c83277407d1b21e690ca3a186f 239 Gene3D G3DSA:3.20.20.70 9 237 1.9E-69 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_329 f4c458c83277407d1b21e690ca3a186f 239 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 68 81 - T 13-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_329 f4c458c83277407d1b21e690ca3a186f 239 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 16 231 2.4E-33 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_329 f4c458c83277407d1b21e690ca3a186f 239 SMART SM00934 16 232 4.0E-76 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_227 16ab934049400feb55c847d5c290e4c8 174 SUPERFAMILY SSF101307 7 167 1.57E-29 T 13-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 AMF_227 16ab934049400feb55c847d5c290e4c8 174 PIRSF PIRSF006162 2 174 5.4E-50 T 13-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMF_227 16ab934049400feb55c847d5c290e4c8 174 Pfam PF04608 Phosphatidylglycerophosphatase A 12 167 8.2E-38 T 13-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AMF_147 da25c339cb7e2513996cced3c1250900 209 Gene3D G3DSA:1.10.150.730 21 81 4.8E-47 T 13-10-2018 AMF_147 da25c339cb7e2513996cced3c1250900 209 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 178 1.0E-25 T 13-10-2018 AMF_147 da25c339cb7e2513996cced3c1250900 209 Gene3D G3DSA:3.40.50.1000 9 181 4.8E-47 T 13-10-2018 IPR023214 HAD superfamily AMF_147 da25c339cb7e2513996cced3c1250900 209 SUPERFAMILY SSF56784 4 183 1.4E-32 T 13-10-2018 IPR036412 HAD-like superfamily AMF_147 da25c339cb7e2513996cced3c1250900 209 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 98 176 6.1E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMF_912 86b4d24e193fb16c87cd94157aa3d8bc 259 Pfam PF02405 Permease MlaE 48 256 7.9E-73 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 AMF_606 a6f473e6dd48b61335ff07f8815ec621 802 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 22 798 2.0E-250 T 13-10-2018 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 AMF_606 a6f473e6dd48b61335ff07f8815ec621 802 Gene3D G3DSA:3.40.50.300 576 765 7.2E-22 T 13-10-2018 AMF_606 a6f473e6dd48b61335ff07f8815ec621 802 Gene3D G3DSA:3.40.50.300 424 549 4.2E-8 T 13-10-2018 AMF_606 a6f473e6dd48b61335ff07f8815ec621 802 SMART SM00382 447 705 2.9E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_606 a6f473e6dd48b61335ff07f8815ec621 802 SUPERFAMILY SSF52540 425 748 2.11E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_606 a6f473e6dd48b61335ff07f8815ec621 802 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 194 396 1.5E-54 T 13-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 AMF_665 d19c9da579e51148909ab9089cf029c6 141 SUPERFAMILY SSF54211 20 136 4.55E-20 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_665 d19c9da579e51148909ab9089cf029c6 141 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 20 136 13.537 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMF_665 d19c9da579e51148909ab9089cf029c6 141 Pfam PF00825 Ribonuclease P 24 133 7.7E-19 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMF_665 d19c9da579e51148909ab9089cf029c6 141 Gene3D G3DSA:3.30.230.10 19 137 5.2E-20 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_665 d19c9da579e51148909ab9089cf029c6 141 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 25 132 3.6E-13 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMF_062 db293ccb0f9ed3eb0c37c5e4310f1adf 200 Gene3D G3DSA:3.40.50.2020 10 199 8.0E-48 T 13-10-2018 AMF_062 db293ccb0f9ed3eb0c37c5e4310f1adf 200 TIGRFAM TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase 12 197 4.7E-54 T 13-10-2018 IPR006273 Orotate phosphoribosyltransferase, bacterial GO:0004588|GO:0019856 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMF_062 db293ccb0f9ed3eb0c37c5e4310f1adf 200 Pfam PF00156 Phosphoribosyl transferase domain 54 161 2.2E-13 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMF_062 db293ccb0f9ed3eb0c37c5e4310f1adf 200 SUPERFAMILY SSF53271 6 157 3.02E-34 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AMF_062 db293ccb0f9ed3eb0c37c5e4310f1adf 200 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 200 21.869 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMF_694 b560dcf43c46674a2a0a07b2176bea9b 102 SUPERFAMILY SSF54189 7 97 1.98E-20 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_694 b560dcf43c46674a2a0a07b2176bea9b 102 Gene3D G3DSA:3.30.70.330 8 100 4.8E-18 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily AMF_694 b560dcf43c46674a2a0a07b2176bea9b 102 Pfam PF00276 Ribosomal protein L23 12 96 1.4E-17 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMF_694 b560dcf43c46674a2a0a07b2176bea9b 102 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 10 100 14.805 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMF_768 ea661db1f386a9706b68b7af6652042a 301 Pfam PF01040 UbiA prenyltransferase family 35 281 2.2E-52 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AMF_768 ea661db1f386a9706b68b7af6652042a 301 Gene3D G3DSA:1.10.357.140 28 198 3.2E-18 T 13-10-2018 AMF_768 ea661db1f386a9706b68b7af6652042a 301 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 19 301 18.682 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AMF_768 ea661db1f386a9706b68b7af6652042a 301 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 22 297 1.1E-92 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AMF_768 ea661db1f386a9706b68b7af6652042a 301 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 73 95 - T 13-10-2018 IPR030470 UbiA prenyltransferase conserved site AMF_913 a313566006bbbbc3c76af2873d64338b 260 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 76 90 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMF_913 a313566006bbbbc3c76af2873d64338b 260 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 49 258 1.2E-76 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMF_913 a313566006bbbbc3c76af2873d64338b 260 SUPERFAMILY SSF51366 49 259 1.18E-61 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMF_913 a313566006bbbbc3c76af2873d64338b 260 Gene3D G3DSA:3.20.20.70 42 259 2.1E-75 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_913 a313566006bbbbc3c76af2873d64338b 260 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 178 200 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMF_913 a313566006bbbbc3c76af2873d64338b 260 PIRSF PIRSF001461 43 260 3.4E-80 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMF_913 a313566006bbbbc3c76af2873d64338b 260 Pfam PF00834 Ribulose-phosphate 3 epimerase family 49 245 1.9E-70 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 144 8.7E-13 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 5 393 1.3E-200 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 129 138 3.6E-22 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 76 86 3.6E-22 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 92 103 3.6E-22 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 10 23 3.6E-22 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 56 64 3.6E-22 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 SUPERFAMILY SSF50465 302 393 7.44E-34 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 49 64 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Gene3D G3DSA:3.40.50.300 1 202 3.8E-63 T 13-10-2018 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Pfam PF00009 Elongation factor Tu GTP binding domain 6 177 5.3E-56 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 SUPERFAMILY SSF50447 204 298 9.03E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 SUPERFAMILY SSF52540 5 225 2.68E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 393 56.518 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Gene3D G3DSA:2.40.30.10 206 299 1.6E-37 T 13-10-2018 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Pfam PF03144 Elongation factor Tu domain 2 224 292 1.4E-17 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Gene3D G3DSA:2.40.30.10 300 392 4.6E-39 T 13-10-2018 AMF_186 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Pfam PF03143 Elongation factor Tu C-terminal domain 298 391 4.1E-30 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMF_466 8a5d882abe9235bad44903d4ea9112f6 169 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 19 165 1.7E-57 T 13-10-2018 AMF_466 8a5d882abe9235bad44903d4ea9112f6 169 Gene3D G3DSA:1.10.10.1590 8 82 4.7E-24 T 13-10-2018 AMF_466 8a5d882abe9235bad44903d4ea9112f6 169 Gene3D G3DSA:3.40.30.10 83 169 1.4E-30 T 13-10-2018 AMF_466 8a5d882abe9235bad44903d4ea9112f6 169 PIRSF PIRSF000216 1 169 2.4E-68 T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_466 8a5d882abe9235bad44903d4ea9112f6 169 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 20 165 3.8E-56 T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_466 8a5d882abe9235bad44903d4ea9112f6 169 SUPERFAMILY SSF52833 10 167 9.17E-54 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_466 8a5d882abe9235bad44903d4ea9112f6 169 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 122 140 - T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_834 308bca5a1550bf24a74839595ce87bca 434 SUPERFAMILY SSF81442 7 429 3.14E-42 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_834 308bca5a1550bf24a74839595ce87bca 434 Gene3D G3DSA:1.20.210.10 3 433 5.4E-32 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_834 308bca5a1550bf24a74839595ce87bca 434 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 15 391 1.1E-9 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_282 f790db7d3b4cdf1212a885a3795d9455 242 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 6 233 4.3E-47 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMF_282 f790db7d3b4cdf1212a885a3795d9455 242 Gene3D G3DSA:3.30.930.10 3 194 1.9E-43 T 13-10-2018 AMF_282 f790db7d3b4cdf1212a885a3795d9455 242 Gene3D G3DSA:2.30.30.100 196 241 1.2E-5 T 13-10-2018 AMF_282 f790db7d3b4cdf1212a885a3795d9455 242 Pfam PF03099 Biotin/lipoate A/B protein ligase family 17 138 2.5E-18 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMF_282 f790db7d3b4cdf1212a885a3795d9455 242 SUPERFAMILY SSF55681 2 193 1.99E-45 T 13-10-2018 AMF_692 9d9bf35369987610d6b0f0fcbd647a40 93 SUPERFAMILY SSF54570 2 84 7.85E-28 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_692 9d9bf35369987610d6b0f0fcbd647a40 93 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 20.779 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_692 9d9bf35369987610d6b0f0fcbd647a40 93 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.4E-15 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_692 9d9bf35369987610d6b0f0fcbd647a40 93 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.4E-15 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_692 9d9bf35369987610d6b0f0fcbd647a40 93 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.4E-15 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_692 9d9bf35369987610d6b0f0fcbd647a40 93 PIRSF PIRSF002144 1 92 1.3E-28 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_692 9d9bf35369987610d6b0f0fcbd647a40 93 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 13-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_692 9d9bf35369987610d6b0f0fcbd647a40 93 Gene3D G3DSA:3.30.860.10 1 92 3.9E-31 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_692 9d9bf35369987610d6b0f0fcbd647a40 93 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 5.5E-31 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMF_692 9d9bf35369987610d6b0f0fcbd647a40 93 Pfam PF00203 Ribosomal protein S19 3 83 4.2E-27 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_696 41ea0129122a4daf6d7e359d40f17158 232 Gene3D G3DSA:2.40.30.10 132 214 3.7E-15 T 13-10-2018 AMF_696 41ea0129122a4daf6d7e359d40f17158 232 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 8 208 7.1E-74 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_696 41ea0129122a4daf6d7e359d40f17158 232 Gene3D G3DSA:2.40.50.620 37 100 2.7E-6 T 13-10-2018 AMF_696 41ea0129122a4daf6d7e359d40f17158 232 Pfam PF00297 Ribosomal protein L3 101 185 1.0E-12 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_696 41ea0129122a4daf6d7e359d40f17158 232 ProSitePatterns PS00474 Ribosomal protein L3 signature. 104 127 - T 13-10-2018 IPR019926 Ribosomal protein L3, conserved site AMF_696 41ea0129122a4daf6d7e359d40f17158 232 SUPERFAMILY SSF50447 6 216 4.24E-66 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMF_651 3b78910576b51a8d7142ab5dfa57a991 323 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 323 67.545 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMF_651 3b78910576b51a8d7142ab5dfa57a991 323 SUPERFAMILY SSF53901 7 322 4.36E-64 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AMF_651 3b78910576b51a8d7142ab5dfa57a991 323 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 7 322 5.1E-117 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMF_651 3b78910576b51a8d7142ab5dfa57a991 323 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 108 190 6.5E-30 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMF_651 3b78910576b51a8d7142ab5dfa57a991 323 Gene3D G3DSA:3.40.47.10 4 323 1.3E-117 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 AMF_651 3b78910576b51a8d7142ab5dfa57a991 323 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 234 322 3.7E-32 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMF_449 e135e3d06245c113e8db0919dcc94221 348 Gene3D G3DSA:3.40.50.300 160 336 1.4E-44 T 13-10-2018 AMF_449 e135e3d06245c113e8db0919dcc94221 348 Pfam PF01018 GTP1/OBG 4 157 6.5E-56 T 13-10-2018 IPR006169 GTP1/OBG domain AMF_449 e135e3d06245c113e8db0919dcc94221 348 Hamap MF_01454 GTPase Obg [obg]. 2 325 43.451 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_449 e135e3d06245c113e8db0919dcc94221 348 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 7.0E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_449 e135e3d06245c113e8db0919dcc94221 348 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 7.0E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_449 e135e3d06245c113e8db0919dcc94221 348 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 7.0E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_449 e135e3d06245c113e8db0919dcc94221 348 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 7.0E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_449 e135e3d06245c113e8db0919dcc94221 348 PIRSF PIRSF002401 1 337 1.2E-123 T 13-10-2018 IPR035101 GTP-binding protein, Obg-type AMF_449 e135e3d06245c113e8db0919dcc94221 348 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 316 7.0E-128 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_449 e135e3d06245c113e8db0919dcc94221 348 Pfam PF01926 50S ribosome-binding GTPase 161 280 1.7E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_449 e135e3d06245c113e8db0919dcc94221 348 SUPERFAMILY SSF82051 3 158 9.94E-53 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily AMF_449 e135e3d06245c113e8db0919dcc94221 348 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 13-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 AMF_449 e135e3d06245c113e8db0919dcc94221 348 Gene3D G3DSA:2.70.210.12 1 158 3.5E-56 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily AMF_449 e135e3d06245c113e8db0919dcc94221 348 SUPERFAMILY SSF52540 161 308 3.15E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_148 2012e0e1be5d92691f924c4669649ac9 592 Pfam PF02938 GAD domain 317 409 9.7E-16 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 196 208 1.9E-22 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 213 226 1.9E-22 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 522 536 1.9E-22 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 478 494 1.9E-22 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 Pfam PF01336 OB-fold nucleic acid binding domain 21 105 2.1E-10 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 Gene3D G3DSA:3.30.1360.30 281 425 1.2E-162 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 4 588 29.497 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 Gene3D G3DSA:3.30.930.10 124 585 1.2E-162 T 13-10-2018 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 5 590 1.4E-181 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 SUPERFAMILY SSF55681 124 561 1.79E-93 T 13-10-2018 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 Gene3D G3DSA:2.40.50.140 1 110 5.5E-31 T 13-10-2018 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 Pfam PF00152 tRNA synthetases class II (D, K and N) 124 561 1.2E-92 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_148 2012e0e1be5d92691f924c4669649ac9 592 SUPERFAMILY SSF50249 4 109 1.85E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_148 2012e0e1be5d92691f924c4669649ac9 592 SUPERFAMILY SSF55261 298 425 4.41E-34 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AMF_355 bc0c2d7ac5d1f582c364bc8996d0992c 343 Gene3D G3DSA:1.10.620.20 18 329 2.4E-91 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 AMF_355 bc0c2d7ac5d1f582c364bc8996d0992c 343 Pfam PF00268 Ribonucleotide reductase, small chain 28 303 3.5E-74 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_355 bc0c2d7ac5d1f582c364bc8996d0992c 343 PIRSF PIRSF000355 17 339 4.1E-103 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_355 bc0c2d7ac5d1f582c364bc8996d0992c 343 SUPERFAMILY SSF47240 29 340 3.73E-87 T 13-10-2018 IPR009078 Ferritin-like superfamily AMF_237 4e6643965eef158d3c3369ccd52a6916 437 Pfam PF01595 Domain of unknown function DUF21 22 196 6.6E-40 T 13-10-2018 IPR002550 CNNM, transmembrane domain AMF_237 4e6643965eef158d3c3369ccd52a6916 437 SMART SM01091 354 431 1.3E-21 T 13-10-2018 IPR005170 Transporter-associated domain AMF_237 4e6643965eef158d3c3369ccd52a6916 437 Gene3D G3DSA:3.30.465.10 353 428 1.7E-21 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMF_237 4e6643965eef158d3c3369ccd52a6916 437 SUPERFAMILY SSF54631 211 350 2.68E-28 T 13-10-2018 AMF_237 4e6643965eef158d3c3369ccd52a6916 437 Gene3D G3DSA:3.10.580.10 197 352 2.5E-45 T 13-10-2018 AMF_237 4e6643965eef158d3c3369ccd52a6916 437 SUPERFAMILY SSF56176 352 433 6.82E-18 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMF_237 4e6643965eef158d3c3369ccd52a6916 437 Pfam PF00571 CBS domain 216 271 0.0017 T 13-10-2018 IPR000644 CBS domain AMF_237 4e6643965eef158d3c3369ccd52a6916 437 Pfam PF00571 CBS domain 290 338 2.5E-5 T 13-10-2018 IPR000644 CBS domain AMF_237 4e6643965eef158d3c3369ccd52a6916 437 Pfam PF03471 Transporter associated domain 356 429 1.0E-17 T 13-10-2018 IPR005170 Transporter-associated domain AMF_618 71525757c1fd55b212c69d8fee14a169 662 Pfam PF00270 DEAD/DEAH box helicase 154 302 9.0E-17 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMF_618 71525757c1fd55b212c69d8fee14a169 662 Gene3D G3DSA:3.40.50.300 123 317 2.1E-59 T 13-10-2018 AMF_618 71525757c1fd55b212c69d8fee14a169 662 SUPERFAMILY SSF52540 149 537 3.68E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_618 71525757c1fd55b212c69d8fee14a169 662 SMART SM00490 432 527 2.7E-12 T 13-10-2018 IPR001650 Helicase, C-terminal AMF_618 71525757c1fd55b212c69d8fee14a169 662 SMART SM00487 130 330 3.6E-22 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMF_618 71525757c1fd55b212c69d8fee14a169 662 Gene3D G3DSA:1.10.8.630 5 110 1.2E-23 T 13-10-2018 AMF_618 71525757c1fd55b212c69d8fee14a169 662 TIGRFAM TIGR00595 priA: primosomal protein N' 157 659 1.8E-173 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMF_618 71525757c1fd55b212c69d8fee14a169 662 Hamap MF_00983 Probable primosomal protein N' [priA]. 9 661 22.025 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMF_618 71525757c1fd55b212c69d8fee14a169 662 Pfam PF00271 Helicase conserved C-terminal domain 442 526 3.7E-8 T 13-10-2018 IPR001650 Helicase, C-terminal AMF_565 b240f300b74b9c168014ae6be3f4777e 326 Pfam PF00696 Amino acid kinase family 50 294 4.7E-26 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMF_565 b240f300b74b9c168014ae6be3f4777e 326 Gene3D G3DSA:3.40.1160.10 30 322 9.3E-73 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMF_565 b240f300b74b9c168014ae6be3f4777e 326 TIGRFAM TIGR00761 argB: acetylglutamate kinase 50 295 4.6E-52 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMF_565 b240f300b74b9c168014ae6be3f4777e 326 SUPERFAMILY SSF53633 29 318 2.65E-69 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMF_565 b240f300b74b9c168014ae6be3f4777e 326 PIRSF PIRSF000728 34 319 6.4E-81 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMF_775 8228673d84bdd6f316563bd16e68401e 292 SUPERFAMILY SSF52172 2 178 4.83E-31 T 13-10-2018 IPR011006 CheY-like superfamily AMF_775 8228673d84bdd6f316563bd16e68401e 292 Gene3D G3DSA:1.10.10.10 128 242 1.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMF_775 8228673d84bdd6f316563bd16e68401e 292 Pfam PF00072 Response regulator receiver domain 5 118 2.8E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMF_775 8228673d84bdd6f316563bd16e68401e 292 SMART SM00862 150 227 1.3E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMF_775 8228673d84bdd6f316563bd16e68401e 292 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 227 3.5E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMF_775 8228673d84bdd6f316563bd16e68401e 292 Gene3D G3DSA:3.40.50.2300 1 126 7.3E-32 T 13-10-2018 AMF_775 8228673d84bdd6f316563bd16e68401e 292 SMART SM00448 3 117 2.9E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMF_529 7f79854daaf43b87077d1c4810672519 146 Gene3D G3DSA:2.60.300.12 8 146 3.2E-24 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMF_529 7f79854daaf43b87077d1c4810672519 146 SUPERFAMILY SSF89360 9 135 2.35E-19 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMF_389 6cd0ccc64488cc21979fa5fbf312f5dc 306 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 31 177 2.0E-47 T 13-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 AMF_389 6cd0ccc64488cc21979fa5fbf312f5dc 306 Gene3D G3DSA:3.30.2350.10 2 240 1.1E-77 T 13-10-2018 AMF_389 6cd0ccc64488cc21979fa5fbf312f5dc 306 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 7 304 17.399 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_389 6cd0ccc64488cc21979fa5fbf312f5dc 306 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 9 216 2.7E-64 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_389 6cd0ccc64488cc21979fa5fbf312f5dc 306 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 178 233 9.3E-13 T 13-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 AMF_389 6cd0ccc64488cc21979fa5fbf312f5dc 306 SUPERFAMILY SSF55120 6 236 1.27E-70 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Gene3D G3DSA:1.10.268.10 372 487 1.6E-207 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Gene3D G3DSA:3.30.1360.40 239 335 1.6E-207 T 13-10-2018 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 35 495 1.2E-150 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 SUPERFAMILY SSF56719 33 515 6.02E-167 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 SUPERFAMILY SSF101904 527 903 2.35E-93 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Gene3D G3DSA:3.90.199.10 36 515 1.6E-207 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 SMART SM00434 14 493 5.1E-249 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Gene3D G3DSA:2.120.10.90 524 753 2.8E-67 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Gene3D G3DSA:2.120.10.90 770 893 1.5E-30 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 8 893 22.767 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 12 891 0.0 T 13-10-2018 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 583 631 3.5E-4 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 533 578 6.3E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 845 891 5.8E-12 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 691 738 2.1E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 795 838 9.8E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_273 b2ce7add57fb05fe5595d8f27f7c5e1d 908 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 644 687 0.012 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_173 e0217a1c64f1f7dd3bd184806f323033 205 Gene3D G3DSA:1.20.950.20 30 104 4.7E-8 T 13-10-2018 AMF_173 e0217a1c64f1f7dd3bd184806f323033 205 Pfam PF01292 Prokaryotic cytochrome b561 35 205 1.4E-27 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AMF_173 e0217a1c64f1f7dd3bd184806f323033 205 SUPERFAMILY SSF81342 35 192 2.04E-31 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMF_248 40e68b3115467f0c85e1ffa43109f392 632 SMART SM01340 213 333 4.0E-47 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AMF_248 40e68b3115467f0c85e1ffa43109f392 632 Pfam PF08676 MutL C terminal dimerisation domain 441 589 1.7E-37 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMF_248 40e68b3115467f0c85e1ffa43109f392 632 Gene3D G3DSA:3.30.565.10 6 216 3.4E-60 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_248 40e68b3115467f0c85e1ffa43109f392 632 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 8 313 6.1E-77 T 13-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 AMF_248 40e68b3115467f0c85e1ffa43109f392 632 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 217 332 8.3E-37 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AMF_248 40e68b3115467f0c85e1ffa43109f392 632 Gene3D G3DSA:3.30.1370.100 487 586 5.1E-50 T 13-10-2018 AMF_248 40e68b3115467f0c85e1ffa43109f392 632 SUPERFAMILY SSF54211 197 333 1.52E-31 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_248 40e68b3115467f0c85e1ffa43109f392 632 SUPERFAMILY SSF118116 441 631 1.44E-46 T 13-10-2018 IPR037198 MutL, C-terminal domain superfamily AMF_248 40e68b3115467f0c85e1ffa43109f392 632 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 6 629 24.764 T 13-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 AMF_248 40e68b3115467f0c85e1ffa43109f392 632 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 131 1.8E-12 T 13-10-2018 AMF_248 40e68b3115467f0c85e1ffa43109f392 632 Gene3D G3DSA:3.30.230.10 220 332 1.1E-32 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_248 40e68b3115467f0c85e1ffa43109f392 632 Gene3D G3DSA:2.30.42.20 447 631 5.1E-50 T 13-10-2018 AMF_248 40e68b3115467f0c85e1ffa43109f392 632 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 97 103 - T 13-10-2018 IPR014762 DNA mismatch repair, conserved site AMF_248 40e68b3115467f0c85e1ffa43109f392 632 SUPERFAMILY SSF55874 8 216 1.7E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_248 40e68b3115467f0c85e1ffa43109f392 632 SMART SM00853 445 589 4.5E-40 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMF_233 48f6c11e83f99c513c9d31b481e3795c 324 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 25 321 5.2E-75 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AMF_233 48f6c11e83f99c513c9d31b481e3795c 324 Pfam PF00551 Formyl transferase 25 203 9.9E-38 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_233 48f6c11e83f99c513c9d31b481e3795c 324 SUPERFAMILY SSF50486 224 319 3.73E-16 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 AMF_233 48f6c11e83f99c513c9d31b481e3795c 324 Gene3D G3DSA:3.40.50.170 22 226 4.9E-71 T 13-10-2018 AMF_233 48f6c11e83f99c513c9d31b481e3795c 324 SUPERFAMILY SSF53328 24 224 1.31E-57 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_233 48f6c11e83f99c513c9d31b481e3795c 324 Gene3D G3DSA:3.10.25.10 227 324 1.8E-14 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_233 48f6c11e83f99c513c9d31b481e3795c 324 Pfam PF02911 Formyl transferase, C-terminal domain 224 315 6.8E-18 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_233 48f6c11e83f99c513c9d31b481e3795c 324 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 24 317 29.665 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AMF_452 e10e75b8c697d2aa8e1ed68123ad79e9 291 PIRSF PIRSF004486 1 291 7.8E-103 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMF_452 e10e75b8c697d2aa8e1ed68123ad79e9 291 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 289 2.1E-89 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMF_452 e10e75b8c697d2aa8e1ed68123ad79e9 291 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 3 290 34.682 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMF_452 e10e75b8c697d2aa8e1ed68123ad79e9 291 Pfam PF01795 MraW methylase family 2 289 2.8E-92 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMF_452 e10e75b8c697d2aa8e1ed68123ad79e9 291 SUPERFAMILY SSF53335 3 290 9.5E-42 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_452 e10e75b8c697d2aa8e1ed68123ad79e9 291 SUPERFAMILY SSF81799 110 210 2.88E-30 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AMF_452 e10e75b8c697d2aa8e1ed68123ad79e9 291 Gene3D G3DSA:3.40.50.150 3 287 1.8E-96 T 13-10-2018 AMF_452 e10e75b8c697d2aa8e1ed68123ad79e9 291 Gene3D G3DSA:1.10.150.170 108 211 1.8E-96 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AMF_779 694e0759f4ae703dd1a1d5bedb51a660 170 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 27 154 24.671 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMF_779 694e0759f4ae703dd1a1d5bedb51a660 170 PIRSF PIRSF002181 13 168 1.5E-44 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMF_779 694e0759f4ae703dd1a1d5bedb51a660 170 Pfam PF00572 Ribosomal protein L13 26 150 1.3E-48 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMF_779 694e0759f4ae703dd1a1d5bedb51a660 170 Gene3D G3DSA:3.90.1180.10 13 155 1.5E-51 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AMF_779 694e0759f4ae703dd1a1d5bedb51a660 170 SUPERFAMILY SSF52161 17 155 3.27E-50 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AMF_779 694e0759f4ae703dd1a1d5bedb51a660 170 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 19 154 1.9E-51 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_546 6374012dd0cddc0c607e502e06304545 430 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 33 421 6.5E-94 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMF_546 6374012dd0cddc0c607e502e06304545 430 Pfam PF04551 GcpE protein 36 422 8.9E-96 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMF_546 6374012dd0cddc0c607e502e06304545 430 PIRSF PIRSF004640 25 430 2.1E-127 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMF_546 6374012dd0cddc0c607e502e06304545 430 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 29 424 25.029 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMF_546 6374012dd0cddc0c607e502e06304545 430 Gene3D G3DSA:3.20.20.20 28 315 4.0E-77 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMF_546 6374012dd0cddc0c607e502e06304545 430 Gene3D G3DSA:3.30.413.10 316 430 5.9E-35 T 13-10-2018 AMF_192 d9888fe7c0ba5d0dd28eb7d8b16e87aa 167 Gene3D G3DSA:3.30.70.1730 5 137 2.3E-23 T 13-10-2018 AMF_192 d9888fe7c0ba5d0dd28eb7d8b16e87aa 167 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 27 146 0.003 T 13-10-2018 AMF_192 d9888fe7c0ba5d0dd28eb7d8b16e87aa 167 Pfam PF00466 Ribosomal protein L10 7 102 1.5E-15 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 AMF_192 d9888fe7c0ba5d0dd28eb7d8b16e87aa 167 SUPERFAMILY SSF160369 6 165 6.28E-30 T 13-10-2018 AMF_550 37ebff4babce48da930f28c9bd470430 487 Pfam PF00361 Proton-conducting membrane transporter 122 412 9.8E-63 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_550 37ebff4babce48da930f28c9bd470430 487 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 4 476 9.5E-134 T 13-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_550 37ebff4babce48da930f28c9bd470430 487 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 370 396 6.1E-41 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_550 37ebff4babce48da930f28c9bd470430 487 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 230 254 6.1E-41 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_550 37ebff4babce48da930f28c9bd470430 487 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 318 337 6.1E-41 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_550 37ebff4babce48da930f28c9bd470430 487 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 156 180 6.1E-41 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_550 37ebff4babce48da930f28c9bd470430 487 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 126 145 6.1E-41 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_908 518a4d106963837d419154c84b074b55 342 ProSitePatterns PS01347 MraY family signature 1. 56 68 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMF_908 518a4d106963837d419154c84b074b55 342 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 11 338 19.581 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMF_908 518a4d106963837d419154c84b074b55 342 ProSitePatterns PS01348 MraY family signature 2. 173 184 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMF_908 518a4d106963837d419154c84b074b55 342 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 25 337 2.9E-82 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMF_908 518a4d106963837d419154c84b074b55 342 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 56 68 9.1E-5 T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMF_908 518a4d106963837d419154c84b074b55 342 Pfam PF00953 Glycosyl transferase family 4 87 263 2.4E-32 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 AMF_731 07100e95b643f2c1daf5097b0bf0b719 271 SUPERFAMILY SSF49482 64 254 8.9E-33 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMF_731 07100e95b643f2c1daf5097b0bf0b719 271 Gene3D G3DSA:2.60.130.10 64 257 6.0E-27 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMF_731 07100e95b643f2c1daf5097b0bf0b719 271 Pfam PF00775 Dioxygenase 88 218 8.4E-9 T 13-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMF_320 1d4064723738da86d3797a1b2d2b49be 197 Gene3D G3DSA:3.90.870.10 1 193 6.3E-48 T 13-10-2018 AMF_320 1d4064723738da86d3797a1b2d2b49be 197 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 2 186 7.0E-44 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 AMF_320 1d4064723738da86d3797a1b2d2b49be 197 Pfam PF01300 Telomere recombination 6 178 5.9E-44 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 AMF_320 1d4064723738da86d3797a1b2d2b49be 197 SUPERFAMILY SSF55821 2 183 1.5E-46 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMF_225 88ae1e8073b94868f09d55a7bc75ae95 273 Gene3D G3DSA:3.40.630.30 25 269 7.2E-11 T 13-10-2018 AMF_225 88ae1e8073b94868f09d55a7bc75ae95 273 Pfam PF00583 Acetyltransferase (GNAT) family 178 259 1.4E-7 T 13-10-2018 IPR000182 GNAT domain AMF_225 88ae1e8073b94868f09d55a7bc75ae95 273 SUPERFAMILY SSF55729 173 267 5.32E-15 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMF_584 84fe12ebdfef11745dea30fbdcab80ff 267 Pfam PF00950 ABC 3 transport family 8 260 9.0E-50 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AMF_584 84fe12ebdfef11745dea30fbdcab80ff 267 SUPERFAMILY SSF81345 4 258 2.35E-23 T 13-10-2018 IPR037294 ABC transporter, BtuC-like AMF_169 6b3f3dd68c4fde270d34e35ed6c82760 92 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 7 61 7.7E-10 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_169 6b3f3dd68c4fde270d34e35ed6c82760 92 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 6 60 11.918 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_169 6b3f3dd68c4fde270d34e35ed6c82760 92 Pfam PF01165 Ribosomal protein S21 8 59 3.0E-10 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1010 bad16eb698229a93dd5a28e549d1e432 443 SUPERFAMILY SSF52540 73 364 1.12E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_1010 bad16eb698229a93dd5a28e549d1e432 443 SUPERFAMILY SSF116878 120 443 1.03E-45 T 13-10-2018 AMF_1010 bad16eb698229a93dd5a28e549d1e432 443 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 12 443 2.0E-93 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AMF_1010 bad16eb698229a93dd5a28e549d1e432 443 Pfam PF01926 50S ribosome-binding GTPase 216 302 1.7E-20 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_1010 bad16eb698229a93dd5a28e549d1e432 443 Gene3D G3DSA:3.40.50.300 215 375 3.2E-102 T 13-10-2018 AMF_1010 bad16eb698229a93dd5a28e549d1e432 443 Gene3D G3DSA:1.20.120.430 121 443 3.2E-102 T 13-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 AMF_1010 bad16eb698229a93dd5a28e549d1e432 443 Gene3D G3DSA:3.30.1360.120 1 120 1.0E-39 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMF_1010 bad16eb698229a93dd5a28e549d1e432 443 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 443 31.083 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AMF_1010 bad16eb698229a93dd5a28e549d1e432 443 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 119 2.2E-36 T 13-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 AMF_1010 bad16eb698229a93dd5a28e549d1e432 443 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 215 334 5.0E-19 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_1010 bad16eb698229a93dd5a28e549d1e432 443 Pfam PF12631 MnmE helical domain 122 440 4.0E-51 T 13-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 AMF_900 e38b4c1d35c880e42a8ed2f7655d72c3 433 Gene3D G3DSA:2.40.50.100 3 103 4.1E-28 T 13-10-2018 AMF_900 e38b4c1d35c880e42a8ed2f7655d72c3 433 SUPERFAMILY SSF47005 150 194 1.24E-10 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMF_900 e38b4c1d35c880e42a8ed2f7655d72c3 433 Gene3D G3DSA:3.30.559.10 196 430 3.0E-93 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMF_900 e38b4c1d35c880e42a8ed2f7655d72c3 433 SUPERFAMILY SSF52777 207 432 1.78E-81 T 13-10-2018 AMF_900 e38b4c1d35c880e42a8ed2f7655d72c3 433 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 208 432 8.3E-85 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AMF_900 e38b4c1d35c880e42a8ed2f7655d72c3 433 Gene3D G3DSA:4.10.320.10 148 195 6.8E-15 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMF_900 e38b4c1d35c880e42a8ed2f7655d72c3 433 SUPERFAMILY SSF51230 2 91 7.2E-24 T 13-10-2018 IPR011053 Single hybrid motif AMF_900 e38b4c1d35c880e42a8ed2f7655d72c3 433 Pfam PF02817 e3 binding domain 155 190 1.1E-12 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AMF_900 e38b4c1d35c880e42a8ed2f7655d72c3 433 Pfam PF00364 Biotin-requiring enzyme 5 77 6.7E-16 T 13-10-2018 IPR000089 Biotin/lipoyl attachment AMF_900 e38b4c1d35c880e42a8ed2f7655d72c3 433 TIGRFAM TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 5 433 1.0E-143 T 13-10-2018 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex GO:0004742|GO:0006090|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-70268 AMF_392 aee9381aa418c1cfd99380f636de9d6b 258 Pfam PF08241 Methyltransferase domain 48 135 1.8E-14 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMF_392 aee9381aa418c1cfd99380f636de9d6b 258 SUPERFAMILY SSF53335 29 211 1.13E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_392 aee9381aa418c1cfd99380f636de9d6b 258 Gene3D G3DSA:3.40.50.150 10 239 5.6E-21 T 13-10-2018 AMF_210 5ae39529cac1883ba0b66abd2ecf92f3 408 PIRSF PIRSF001434 2 408 2.9E-102 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMF_210 5ae39529cac1883ba0b66abd2ecf92f3 408 Gene3D G3DSA:3.90.1150.10 275 407 3.6E-26 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMF_210 5ae39529cac1883ba0b66abd2ecf92f3 408 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 216 230 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMF_210 5ae39529cac1883ba0b66abd2ecf92f3 408 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 38 404 5.9E-72 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMF_210 5ae39529cac1883ba0b66abd2ecf92f3 408 SUPERFAMILY SSF53383 73 405 3.27E-66 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMF_210 5ae39529cac1883ba0b66abd2ecf92f3 408 Gene3D G3DSA:3.40.640.10 28 274 4.2E-52 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMF_299 b7f187d81f115b8458b720612dc0183b 119 ProSitePatterns PS00892 HIT domain signature. 96 114 - T 13-10-2018 IPR019808 Histidine triad, conserved site AMF_299 b7f187d81f115b8458b720612dc0183b 119 SUPERFAMILY SSF54197 7 117 5.95E-30 T 13-10-2018 IPR036265 HIT-like superfamily AMF_299 b7f187d81f115b8458b720612dc0183b 119 Gene3D G3DSA:3.30.428.10 14 118 7.9E-30 T 13-10-2018 IPR036265 HIT-like superfamily AMF_299 b7f187d81f115b8458b720612dc0183b 119 PRINTS PR00332 Histidine triad family signature 15 31 6.6E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein AMF_299 b7f187d81f115b8458b720612dc0183b 119 PRINTS PR00332 Histidine triad family signature 36 54 6.6E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein AMF_299 b7f187d81f115b8458b720612dc0183b 119 PRINTS PR00332 Histidine triad family signature 103 113 6.6E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein AMF_299 b7f187d81f115b8458b720612dc0183b 119 Pfam PF01230 HIT domain 21 115 1.2E-23 T 13-10-2018 IPR001310 Histidine triad (HIT) protein AMF_321 ffb18377f27d4c62dab468d85b2a7cca 258 Pfam PF01121 Dephospho-CoA kinase 34 205 2.6E-27 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMF_321 ffb18377f27d4c62dab468d85b2a7cca 258 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 35 205 5.2E-28 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMF_321 ffb18377f27d4c62dab468d85b2a7cca 258 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 32 227 20.532 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMF_321 ffb18377f27d4c62dab468d85b2a7cca 258 SUPERFAMILY SSF52540 32 224 9.77E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_321 ffb18377f27d4c62dab468d85b2a7cca 258 Gene3D G3DSA:3.40.50.300 18 233 1.6E-41 T 13-10-2018 AMF_347 ee27135ea2aacbd239ea00a859f03ee3 296 SMART SM00363 14 74 3.3E-5 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_347 ee27135ea2aacbd239ea00a859f03ee3 296 Pfam PF00849 RNA pseudouridylate synthase 97 241 3.4E-33 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_347 ee27135ea2aacbd239ea00a859f03ee3 296 Gene3D G3DSA:3.10.290.10 2 67 3.0E-9 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMF_347 ee27135ea2aacbd239ea00a859f03ee3 296 Pfam PF01479 S4 domain 14 60 3.5E-5 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_347 ee27135ea2aacbd239ea00a859f03ee3 296 SUPERFAMILY SSF55120 89 294 1.06E-52 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_347 ee27135ea2aacbd239ea00a859f03ee3 296 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_347 ee27135ea2aacbd239ea00a859f03ee3 296 Gene3D G3DSA:3.30.2350.10 89 296 1.3E-57 T 13-10-2018 AMF_347 ee27135ea2aacbd239ea00a859f03ee3 296 SUPERFAMILY SSF55174 12 111 6.28E-8 T 13-10-2018 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 Gene3D G3DSA:1.10.601.10 138 482 2.6E-94 T 13-10-2018 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 607 633 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 Pfam PF04546 Sigma-70, non-essential region 165 381 1.0E-27 T 13-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 Pfam PF04545 Sigma-70, region 4 581 635 7.1E-19 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 32 644 36.356 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 Pfam PF04539 Sigma-70 region 3 492 568 1.9E-23 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 Gene3D G3DSA:1.10.220.120 32 94 3.5E-12 T 13-10-2018 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 SUPERFAMILY SSF88946 140 480 1.57E-80 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 SUPERFAMILY SSF88659 544 643 1.87E-24 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 Pfam PF03979 Sigma-70 factor, region 1.1 34 110 1.4E-15 T 13-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 SUPERFAMILY SSF88659 486 559 4.36E-20 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 409 635 2.0E-39 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 409 645 1.3E-114 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 Gene3D G3DSA:1.10.10.10 563 646 1.8E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 Pfam PF04542 Sigma-70 region 2 413 482 8.0E-22 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 Gene3D G3DSA:1.10.10.10 486 561 1.1E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 Pfam PF00140 Sigma-70 factor, region 1.2 123 151 4.6E-9 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 437 450 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 PRINTS PR00046 Major sigma-70 factor signature 585 597 3.5E-30 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 PRINTS PR00046 Major sigma-70 factor signature 622 633 3.5E-30 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 PRINTS PR00046 Major sigma-70 factor signature 461 469 3.5E-30 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 PRINTS PR00046 Major sigma-70 factor signature 607 622 3.5E-30 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_363 3b64f97bd469133df3ba95f7b787f43d 646 PRINTS PR00046 Major sigma-70 factor signature 437 450 3.5E-30 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMF_686 1d224fdbd7b8501734db257bc71831a7 119 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 119 24.101 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMF_686 1d224fdbd7b8501734db257bc71831a7 119 Gene3D G3DSA:2.40.150.20 1 119 7.2E-41 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AMF_686 1d224fdbd7b8501734db257bc71831a7 119 ProSitePatterns PS00049 Ribosomal protein L14 signature. 58 84 - T 13-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_686 1d224fdbd7b8501734db257bc71831a7 119 SMART SM01374 1 119 4.3E-56 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMF_686 1d224fdbd7b8501734db257bc71831a7 119 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 119 3.4E-41 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMF_686 1d224fdbd7b8501734db257bc71831a7 119 SUPERFAMILY SSF50193 1 118 9.03E-40 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AMF_686 1d224fdbd7b8501734db257bc71831a7 119 Pfam PF00238 Ribosomal protein L14p/L23e 1 119 1.2E-40 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMF_991 fd59dbd3b4d3cb30862981867d6111a5 105 SUPERFAMILY SSF55200 12 94 1.57E-27 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMF_991 fd59dbd3b4d3cb30862981867d6111a5 105 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 11 94 1.3E-22 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMF_991 fd59dbd3b4d3cb30862981867d6111a5 105 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 11 93 1.9E-29 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 AMF_991 fd59dbd3b4d3cb30862981867d6111a5 105 Gene3D G3DSA:3.30.110.10 6 101 7.7E-29 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMF_179 468b4b43650f7cdc662a0ca371c404ed 559 SUPERFAMILY SSF56281 26 436 2.41E-75 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMF_179 468b4b43650f7cdc662a0ca371c404ed 559 Gene3D G3DSA:3.40.50.10710 222 371 1.2E-150 T 13-10-2018 AMF_179 468b4b43650f7cdc662a0ca371c404ed 559 SMART SM00849 36 230 9.6E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase AMF_179 468b4b43650f7cdc662a0ca371c404ed 559 Gene3D G3DSA:3.60.15.10 27 439 1.2E-150 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMF_179 468b4b43650f7cdc662a0ca371c404ed 559 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 367 422 4.8E-8 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain AMF_179 468b4b43650f7cdc662a0ca371c404ed 559 Pfam PF00753 Metallo-beta-lactamase superfamily 38 178 2.9E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase AMF_179 468b4b43650f7cdc662a0ca371c404ed 559 Gene3D G3DSA:3.10.20.580 461 553 3.6E-5 T 13-10-2018 AMF_333 e0f676d9b65202415590ac668214d9da 190 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 148 164 - T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_333 e0f676d9b65202415590ac668214d9da 190 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 46 181 3.0E-76 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_333 e0f676d9b65202415590ac668214d9da 190 Gene3D G3DSA:3.40.50.12280 20 189 3.4E-77 T 13-10-2018 AMF_333 e0f676d9b65202415590ac668214d9da 190 SUPERFAMILY SSF56770 44 183 3.53E-65 T 13-10-2018 AMF_333 e0f676d9b65202415590ac668214d9da 190 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 67 174 4.3E-24 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_333 e0f676d9b65202415590ac668214d9da 190 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 22 181 40.758 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_129 6e25c92f645de29ff2ef60d9f54cc8b2 331 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 26 325 5.7E-125 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMF_129 6e25c92f645de29ff2ef60d9f54cc8b2 331 Gene3D G3DSA:1.10.8.60 183 257 9.4E-23 T 13-10-2018 AMF_129 6e25c92f645de29ff2ef60d9f54cc8b2 331 SMART SM00382 52 183 1.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_129 6e25c92f645de29ff2ef60d9f54cc8b2 331 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 325 4.0E-36 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMF_129 6e25c92f645de29ff2ef60d9f54cc8b2 331 SUPERFAMILY SSF52540 21 237 6.26E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_129 6e25c92f645de29ff2ef60d9f54cc8b2 331 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 331 141.574 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMF_129 6e25c92f645de29ff2ef60d9f54cc8b2 331 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 255 325 2.1E-25 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMF_129 6e25c92f645de29ff2ef60d9f54cc8b2 331 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 11 235 6.1E-106 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AMF_129 6e25c92f645de29ff2ef60d9f54cc8b2 331 Gene3D G3DSA:1.10.10.10 259 330 1.1E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMF_129 6e25c92f645de29ff2ef60d9f54cc8b2 331 SUPERFAMILY SSF46785 259 325 1.52E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMF_129 6e25c92f645de29ff2ef60d9f54cc8b2 331 Gene3D G3DSA:3.40.50.300 21 182 4.6E-39 T 13-10-2018 AMF_296 45789adc005582e1830aa67e4ec139c1 383 SUPERFAMILY SSF56563 99 376 4.32E-64 T 13-10-2018 AMF_296 45789adc005582e1830aa67e4ec139c1 383 Pfam PF05065 Phage capsid family 105 375 2.5E-74 T 13-10-2018 IPR024455 Phage capsid AMF_296 45789adc005582e1830aa67e4ec139c1 383 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 24 375 2.6E-92 T 13-10-2018 IPR024455 Phage capsid AMF_251 8a015fc590485b10b73b8cd6322df4be 340 SUPERFAMILY SSF52540 3 307 3.45E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_251 8a015fc590485b10b73b8cd6322df4be 340 Gene3D G3DSA:3.30.450.90 2 93 1.6E-8 T 13-10-2018 AMF_251 8a015fc590485b10b73b8cd6322df4be 340 Gene3D G3DSA:3.40.50.300 107 324 9.0E-16 T 13-10-2018 AMF_864 1d6fcd73fca441b17fe0b82b50049377 303 SUPERFAMILY SSF56925 126 292 9.68E-9 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_864 1d6fcd73fca441b17fe0b82b50049377 303 Gene3D G3DSA:2.40.160.20 101 259 3.9E-7 T 13-10-2018 AMF_864 1d6fcd73fca441b17fe0b82b50049377 303 Pfam PF01617 Surface antigen 44 301 7.0E-30 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_119 56d01cbc42f975121de6c8d5fe27f15f 127 Pfam PF01250 Ribosomal protein S6 22 110 1.9E-21 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_119 56d01cbc42f975121de6c8d5fe27f15f 127 Gene3D G3DSA:3.30.70.60 18 119 1.4E-21 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AMF_119 56d01cbc42f975121de6c8d5fe27f15f 127 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 19 113 17.04 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_119 56d01cbc42f975121de6c8d5fe27f15f 127 TIGRFAM TIGR00166 S6: ribosomal protein bS6 22 112 1.0E-17 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_119 56d01cbc42f975121de6c8d5fe27f15f 127 SUPERFAMILY SSF54995 20 122 2.88E-28 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 193 211 3.7E-28 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 24 35 3.7E-28 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 60 69 3.7E-28 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 224 245 3.7E-28 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 318 4.0E-112 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 464 36.894 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 Gene3D G3DSA:1.20.120.640 312 465 3.6E-28 T 13-10-2018 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 SMART SM00840 348 407 7.8E-14 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 SUPERFAMILY SSF47323 321 463 5.23E-24 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 1 464 2.5E-143 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 SUPERFAMILY SSF52374 2 317 6.7E-90 T 13-10-2018 AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 Gene3D G3DSA:3.40.50.620 1 310 1.5E-118 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_354 795ee992a5817f81ba611d6c1b2fd742 466 Pfam PF09190 DALR domain 349 406 2.9E-13 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMF_077 5e0880d50b0a94fe025e081e6184e51d 339 SUPERFAMILY SSF52151 17 322 7.32E-69 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMF_077 5e0880d50b0a94fe025e081e6184e51d 339 SUPERFAMILY SSF55048 147 214 1.83E-14 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding AMF_077 5e0880d50b0a94fe025e081e6184e51d 339 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 17 307 1.5E-78 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMF_077 5e0880d50b0a94fe025e081e6184e51d 339 Gene3D G3DSA:3.40.366.10 19 302 2.1E-88 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 AMF_077 5e0880d50b0a94fe025e081e6184e51d 339 PIRSF PIRSF000446 14 326 6.9E-76 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMF_077 5e0880d50b0a94fe025e081e6184e51d 339 Gene3D G3DSA:3.30.70.250 144 216 2.1E-88 T 13-10-2018 AMF_077 5e0880d50b0a94fe025e081e6184e51d 339 Pfam PF00698 Acyl transferase domain 18 303 5.4E-32 T 13-10-2018 IPR014043 Acyl transferase AMF_077 5e0880d50b0a94fe025e081e6184e51d 339 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 20 324 3.9E-33 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain AMF_206 613244aa625c7ed6b55380b0ea15de2c 308 SUPERFAMILY SSF52151 3 298 3.92E-43 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMF_206 613244aa625c7ed6b55380b0ea15de2c 308 Pfam PF01734 Patatin-like phospholipase 6 188 5.7E-19 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMF_206 613244aa625c7ed6b55380b0ea15de2c 308 Gene3D G3DSA:3.40.1090.10 2 305 8.5E-62 T 13-10-2018 AMF_699 7a53c1cab708f011dcbe41fbf7b2ab59 261 Pfam PF00588 SpoU rRNA Methylase family 110 249 6.5E-39 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMF_699 7a53c1cab708f011dcbe41fbf7b2ab59 261 SMART SM00967 12 89 2.3E-11 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMF_699 7a53c1cab708f011dcbe41fbf7b2ab59 261 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 13 251 5.4E-55 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 AMF_699 7a53c1cab708f011dcbe41fbf7b2ab59 261 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 12 86 8.0E-9 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMF_699 7a53c1cab708f011dcbe41fbf7b2ab59 261 SUPERFAMILY SSF75217 105 255 3.34E-45 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases AMF_699 7a53c1cab708f011dcbe41fbf7b2ab59 261 Gene3D G3DSA:3.40.1280.10 92 254 1.5E-48 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMF_699 7a53c1cab708f011dcbe41fbf7b2ab59 261 SUPERFAMILY SSF55315 7 85 9.77E-12 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like AMF_053 971e75432b8324a9cb701651a34f4051 151 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 145 1.1E-46 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMF_053 971e75432b8324a9cb701651a34f4051 151 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 151 67.271 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMF_053 971e75432b8324a9cb701651a34f4051 151 Pfam PF03477 ATP cone domain 50 136 2.6E-11 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AMF_271 920709fd1776188a3d11c3dcb4f6e7b9 671 Pfam PF00580 UvrD/REP helicase N-terminal domain 37 297 1.4E-67 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMF_271 920709fd1776188a3d11c3dcb4f6e7b9 671 Gene3D G3DSA:3.40.50.300 37 299 4.7E-88 T 13-10-2018 AMF_271 920709fd1776188a3d11c3dcb4f6e7b9 671 Gene3D G3DSA:3.40.50.300 306 649 3.5E-108 T 13-10-2018 AMF_271 920709fd1776188a3d11c3dcb4f6e7b9 671 Gene3D G3DSA:1.10.486.10 406 562 3.5E-108 T 13-10-2018 AMF_271 920709fd1776188a3d11c3dcb4f6e7b9 671 SUPERFAMILY SSF52540 30 658 3.4E-159 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_271 920709fd1776188a3d11c3dcb4f6e7b9 671 Pfam PF13361 UvrD-like helicase C-terminal domain 304 630 1.6E-63 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMF_271 920709fd1776188a3d11c3dcb4f6e7b9 671 Gene3D G3DSA:1.10.10.160 136 215 4.7E-88 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily AMF_070 b8a04156cde289cc9eadd1a568540d52 270 Gene3D G3DSA:2.60.40.2500 156 269 7.7E-30 T 13-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily AMF_070 b8a04156cde289cc9eadd1a568540d52 270 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 6 257 7.6E-68 T 13-10-2018 IPR014148 P-type conjugative transfer protein VirB9 AMF_070 b8a04156cde289cc9eadd1a568540d52 270 Pfam PF03524 Conjugal transfer protein 32 256 1.4E-62 T 13-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX AMF_852 249efee9f1ead48af167d14e46e57ea4 137 Gene3D G3DSA:1.20.120.910 2 133 1.1E-35 T 13-10-2018 AMF_852 249efee9f1ead48af167d14e46e57ea4 137 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 91 126 1.0E-10 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AMF_852 249efee9f1ead48af167d14e46e57ea4 137 SUPERFAMILY SSF57716 93 131 6.27E-9 T 13-10-2018 AMF_852 249efee9f1ead48af167d14e46e57ea4 137 SUPERFAMILY SSF109635 6 91 1.44E-23 T 13-10-2018 IPR037187 DksA, N-terminal domain superfamily AMF_1014 5dc3d339fdcf336a1f9a8da093106773 469 Gene3D G3DSA:3.40.50.2020 273 439 1.2E-142 T 13-10-2018 AMF_1014 5dc3d339fdcf336a1f9a8da093106773 469 SUPERFAMILY SSF56235 15 252 7.21E-66 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_1014 5dc3d339fdcf336a1f9a8da093106773 469 Pfam PF00156 Phosphoribosyl transferase domain 286 385 6.9E-11 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMF_1014 5dc3d339fdcf336a1f9a8da093106773 469 Gene3D G3DSA:3.60.20.10 15 463 1.2E-142 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_1014 5dc3d339fdcf336a1f9a8da093106773 469 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 14 461 42.892 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMF_1014 5dc3d339fdcf336a1f9a8da093106773 469 SUPERFAMILY SSF53271 248 467 1.84E-69 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AMF_1014 5dc3d339fdcf336a1f9a8da093106773 469 PIRSF PIRSF000485 11 469 2.3E-156 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMF_1014 5dc3d339fdcf336a1f9a8da093106773 469 Pfam PF13537 Glutamine amidotransferase domain 85 210 2.2E-21 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AMF_1014 5dc3d339fdcf336a1f9a8da093106773 469 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 15 462 1.3E-139 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMF_994 8c298f6a03e002e12bcbdf0ac7fdc8bf 445 Pfam PF03743 Bacterial conjugation TrbI-like protein 239 438 6.9E-46 T 13-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI AMF_994 8c298f6a03e002e12bcbdf0ac7fdc8bf 445 Gene3D G3DSA:2.40.128.260 242 436 4.9E-38 T 13-10-2018 AMF_994 8c298f6a03e002e12bcbdf0ac7fdc8bf 445 Gene3D G3DSA:1.10.1200.160 381 417 4.9E-38 T 13-10-2018 AMF_352 176f875e86338b9332989b7c430ce10e 1505 SUPERFAMILY SSF53223 750 931 5.28E-26 T 13-10-2018 AMF_352 176f875e86338b9332989b7c430ce10e 1505 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 109 1458 0.0 T 13-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 AMF_352 176f875e86338b9332989b7c430ce10e 1505 SUPERFAMILY SSF51735 936 1238 2.76E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_305 3a1f13b9aec15770624ff1ab688cabef 506 Pfam PF02540 NAD synthase 242 498 2.0E-71 T 13-10-2018 IPR022310 NAD/GMP synthase AMF_305 3a1f13b9aec15770624ff1ab688cabef 506 SUPERFAMILY SSF56317 4 218 7.64E-12 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMF_305 3a1f13b9aec15770624ff1ab688cabef 506 Gene3D G3DSA:3.40.50.620 242 506 3.0E-93 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_305 3a1f13b9aec15770624ff1ab688cabef 506 Pfam PF00795 Carbon-nitrogen hydrolase 6 95 4.5E-5 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMF_305 3a1f13b9aec15770624ff1ab688cabef 506 Gene3D G3DSA:3.60.110.10 2 241 6.3E-16 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMF_305 3a1f13b9aec15770624ff1ab688cabef 506 TIGRFAM TIGR00552 nadE: NAD+ synthetase 241 499 6.0E-60 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 AMF_305 3a1f13b9aec15770624ff1ab688cabef 506 PIRSF PIRSF006630 215 506 7.6E-97 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMF_305 3a1f13b9aec15770624ff1ab688cabef 506 PIRSF PIRSF006630 168 229 7.2E-4 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMF_305 3a1f13b9aec15770624ff1ab688cabef 506 PIRSF PIRSF006630 1 114 2.2E-10 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMF_305 3a1f13b9aec15770624ff1ab688cabef 506 SUPERFAMILY SSF52402 233 504 3.03E-68 T 13-10-2018 AMF_188 8e9b5a6fdbac6f3ee8987ddbb79bb35c 188 Gene3D G3DSA:2.30.30.30 127 186 4.0E-16 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMF_188 8e9b5a6fdbac6f3ee8987ddbb79bb35c 188 SUPERFAMILY SSF50104 132 186 4.39E-12 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMF_188 8e9b5a6fdbac6f3ee8987ddbb79bb35c 188 SMART SM00738 9 118 2.1E-27 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMF_188 8e9b5a6fdbac6f3ee8987ddbb79bb35c 188 Gene3D G3DSA:3.30.70.940 5 124 2.4E-29 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMF_188 8e9b5a6fdbac6f3ee8987ddbb79bb35c 188 PRINTS PR00338 Transcription termination factor NUSG signature 64 76 4.0E-8 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMF_188 8e9b5a6fdbac6f3ee8987ddbb79bb35c 188 PRINTS PR00338 Transcription termination factor NUSG signature 162 178 4.0E-8 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMF_188 8e9b5a6fdbac6f3ee8987ddbb79bb35c 188 PRINTS PR00338 Transcription termination factor NUSG signature 144 159 4.0E-8 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMF_188 8e9b5a6fdbac6f3ee8987ddbb79bb35c 188 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 9 186 20.572 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMF_188 8e9b5a6fdbac6f3ee8987ddbb79bb35c 188 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 12 186 1.6E-45 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMF_188 8e9b5a6fdbac6f3ee8987ddbb79bb35c 188 Pfam PF02357 Transcription termination factor nusG 11 114 1.2E-17 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMF_188 8e9b5a6fdbac6f3ee8987ddbb79bb35c 188 SUPERFAMILY SSF82679 10 117 7.98E-28 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMF_341 2f6611ac8e1d23b056e6c09e506742d3 234 Pfam PF02666 Phosphatidylserine decarboxylase 46 215 1.2E-28 T 13-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 AMF_341 2f6611ac8e1d23b056e6c09e506742d3 234 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 13 219 2.8E-49 T 13-10-2018 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 AMF_341 2f6611ac8e1d23b056e6c09e506742d3 234 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 12 219 32.797 T 13-10-2018 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 AMF_486 8d2fc96d4ac8378571634c67ea8d11c4 154 Pfam PF00226 DnaJ domain 9 75 3.2E-7 T 13-10-2018 IPR001623 DnaJ domain AMF_486 8d2fc96d4ac8378571634c67ea8d11c4 154 SMART SM00271 8 71 4.8E-7 T 13-10-2018 IPR001623 DnaJ domain AMF_486 8d2fc96d4ac8378571634c67ea8d11c4 154 Gene3D G3DSA:1.10.287.110 8 84 4.8E-19 T 13-10-2018 IPR036869 Chaperone J-domain superfamily AMF_486 8d2fc96d4ac8378571634c67ea8d11c4 154 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 20 148 5.8E-18 T 13-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AMF_486 8d2fc96d4ac8378571634c67ea8d11c4 154 SUPERFAMILY SSF46565 9 79 1.7E-14 T 13-10-2018 IPR036869 Chaperone J-domain superfamily AMF_761 b7118e2587fd4d443ac4cadeb10984d1 247 Gene3D G3DSA:3.40.50.150 13 231 2.7E-69 T 13-10-2018 AMF_761 b7118e2587fd4d443ac4cadeb10984d1 247 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 5 230 35.14 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMF_761 b7118e2587fd4d443ac4cadeb10984d1 247 SUPERFAMILY SSF53335 7 233 8.9E-42 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_761 b7118e2587fd4d443ac4cadeb10984d1 247 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 7 230 1.3E-78 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMF_761 b7118e2587fd4d443ac4cadeb10984d1 247 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 18 33 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AMF_761 b7118e2587fd4d443ac4cadeb10984d1 247 Pfam PF01209 ubiE/COQ5 methyltransferase family 6 230 6.2E-74 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMF_494 0293acce2b9db802575ab47fb6c27470 247 SUPERFAMILY SSF55120 1 247 5.61E-78 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_494 0293acce2b9db802575ab47fb6c27470 247 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 247 31.903 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_494 0293acce2b9db802575ab47fb6c27470 247 Pfam PF01416 tRNA pseudouridine synthase 145 247 2.7E-25 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_494 0293acce2b9db802575ab47fb6c27470 247 Pfam PF01416 tRNA pseudouridine synthase 5 105 1.3E-11 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_494 0293acce2b9db802575ab47fb6c27470 247 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 5 242 3.5E-57 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_494 0293acce2b9db802575ab47fb6c27470 247 Gene3D G3DSA:3.30.70.660 108 246 1.2E-45 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 AMF_494 0293acce2b9db802575ab47fb6c27470 247 Gene3D G3DSA:3.30.70.580 1 107 1.9E-33 T 13-10-2018 AMF_494 0293acce2b9db802575ab47fb6c27470 247 PIRSF PIRSF001430 1 247 1.7E-72 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_108 31bb38dbc42392e423c107016f5f6677 281 SUPERFAMILY SSF51735 13 274 1.76E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_108 31bb38dbc42392e423c107016f5f6677 281 Gene3D G3DSA:3.40.50.720 3 274 1.4E-73 T 13-10-2018 AMF_151 398e1660deef22e43db7946152074614 334 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 72 83 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_151 398e1660deef22e43db7946152074614 334 PIRSF PIRSF039102 54 316 4.1E-60 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_151 398e1660deef22e43db7946152074614 334 PIRSF PIRSF039102 9 61 7.7E-9 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_151 398e1660deef22e43db7946152074614 334 Gene3D G3DSA:3.40.50.20 3 93 3.2E-22 T 13-10-2018 AMF_151 398e1660deef22e43db7946152074614 334 SUPERFAMILY SSF52440 12 105 6.43E-24 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMF_151 398e1660deef22e43db7946152074614 334 Pfam PF01820 D-ala D-ala ligase N-terminus 14 93 7.8E-13 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_151 398e1660deef22e43db7946152074614 334 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 12 309 28.701 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_151 398e1660deef22e43db7946152074614 334 Gene3D G3DSA:3.30.1490.20 120 184 3.4E-50 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMF_151 398e1660deef22e43db7946152074614 334 SUPERFAMILY SSF56059 105 305 9.93E-42 T 13-10-2018 AMF_151 398e1660deef22e43db7946152074614 334 Pfam PF07478 D-ala D-ala ligase C-terminus 113 306 7.0E-35 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMF_151 398e1660deef22e43db7946152074614 334 Gene3D G3DSA:3.30.470.20 95 305 3.4E-50 T 13-10-2018 AMF_707 a10ffe43a738da71a2475c5e301a74ee 354 Gene3D G3DSA:3.40.50.300 12 176 3.7E-17 T 13-10-2018 AMF_707 a10ffe43a738da71a2475c5e301a74ee 354 Pfam PF03969 AFG1-like ATPase 9 353 1.5E-79 T 13-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 AMF_707 a10ffe43a738da71a2475c5e301a74ee 354 SUPERFAMILY SSF52540 52 199 1.55E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_829 8909768d452ae2b6a44c3140ff88141d 186 SMART SM00935 15 175 1.2E-27 T 13-10-2018 IPR005632 Chaperone protein Skp GO:0051082 AMF_829 8909768d452ae2b6a44c3140ff88141d 186 Pfam PF03938 Outer membrane protein (OmpH-like) 16 174 1.4E-21 T 13-10-2018 IPR005632 Chaperone protein Skp GO:0051082 AMF_829 8909768d452ae2b6a44c3140ff88141d 186 Gene3D G3DSA:3.30.910.20 23 185 4.3E-25 T 13-10-2018 IPR024930 Skp domain superfamily AMF_829 8909768d452ae2b6a44c3140ff88141d 186 SUPERFAMILY SSF111384 34 175 2.75E-19 T 13-10-2018 AMF_780 5f82a208c183b3f3fe068ecc908bafb0 465 Pfam PF02321 Outer membrane efflux protein 82 253 2.4E-20 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMF_780 5f82a208c183b3f3fe068ecc908bafb0 465 Pfam PF02321 Outer membrane efflux protein 279 460 5.2E-19 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMF_780 5f82a208c183b3f3fe068ecc908bafb0 465 SUPERFAMILY SSF56954 55 462 3.27E-58 T 13-10-2018 AMF_780 5f82a208c183b3f3fe068ecc908bafb0 465 Gene3D G3DSA:1.20.1600.10 80 465 7.9E-62 T 13-10-2018 AMF_814 bcbca82906dfb3083704cfc3bce6297f 444 SUPERFAMILY SSF63411 259 433 3.5E-28 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_814 bcbca82906dfb3083704cfc3bce6297f 444 Gene3D G3DSA:3.30.830.10 34 242 3.5E-36 T 13-10-2018 AMF_814 bcbca82906dfb3083704cfc3bce6297f 444 Pfam PF05193 Peptidase M16 inactive domain 194 367 3.0E-17 T 13-10-2018 IPR007863 Peptidase M16, C-terminal AMF_814 bcbca82906dfb3083704cfc3bce6297f 444 Pfam PF00675 Insulinase (Peptidase family M16) 49 166 2.6E-6 T 13-10-2018 IPR011765 Peptidase M16, N-terminal AMF_814 bcbca82906dfb3083704cfc3bce6297f 444 Gene3D G3DSA:3.30.830.10 255 437 8.8E-30 T 13-10-2018 AMF_814 bcbca82906dfb3083704cfc3bce6297f 444 SUPERFAMILY SSF63411 36 241 1.05E-35 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_631 a4837d9a1c00c000e3e0cb278bd83626 619 SUPERFAMILY SSF50249 45 189 5.7E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_631 a4837d9a1c00c000e3e0cb278bd83626 619 Pfam PF10150 Ribonuclease E/G family 188 458 2.9E-88 T 13-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AMF_631 a4837d9a1c00c000e3e0cb278bd83626 619 Gene3D G3DSA:3.40.1260.20 467 566 1.3E-14 T 13-10-2018 AMF_631 a4837d9a1c00c000e3e0cb278bd83626 619 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 19 490 1.4E-141 T 13-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AMF_380 ba08ae095444985dc22389f1b365b28d 325 Gene3D G3DSA:3.50.50.60 14 317 5.8E-111 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_380 ba08ae095444985dc22389f1b365b28d 325 SUPERFAMILY SSF51905 6 317 2.44E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_380 ba08ae095444985dc22389f1b365b28d 325 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 141 161 - T 13-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AMF_380 ba08ae095444985dc22389f1b365b28d 325 Gene3D G3DSA:3.50.50.60 128 253 5.8E-111 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 46 61 1.9E-74 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 112 120 1.9E-74 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 13 35 1.9E-74 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 281 299 1.9E-74 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 242 263 1.9E-74 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 149 173 1.9E-74 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 66 76 1.9E-74 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 134 146 1.9E-74 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 201 217 1.9E-74 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_380 ba08ae095444985dc22389f1b365b28d 325 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 13 318 1.4E-115 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 4.7E-35 T 13-10-2018 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 293 4.7E-35 T 13-10-2018 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 4.7E-35 T 13-10-2018 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 4.7E-35 T 13-10-2018 AMF_380 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 240 256 4.7E-35 T 13-10-2018 AMF_380 ba08ae095444985dc22389f1b365b28d 325 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 13 307 5.4E-44 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_658 1c336a577c59abd66bce4358ec3e69de 309 Pfam PF01040 UbiA prenyltransferase family 44 285 2.7E-49 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AMF_658 1c336a577c59abd66bce4358ec3e69de 309 Gene3D G3DSA:1.10.357.140 34 187 2.2E-36 T 13-10-2018 AMF_658 1c336a577c59abd66bce4358ec3e69de 309 Gene3D G3DSA:1.20.120.1780 188 308 4.6E-19 T 13-10-2018 AMF_658 1c336a577c59abd66bce4358ec3e69de 309 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 83 105 - T 13-10-2018 IPR030470 UbiA prenyltransferase conserved site AMF_856 a6a3b847d938f707ab14ef1b61fad974 586 Pfam PF01368 DHH family 97 186 9.6E-7 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMF_856 a6a3b847d938f707ab14ef1b61fad974 586 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 43 582 4.5E-157 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 AMF_856 a6a3b847d938f707ab14ef1b61fad974 586 Gene3D G3DSA:3.10.310.30 345 467 5.1E-26 T 13-10-2018 AMF_856 a6a3b847d938f707ab14ef1b61fad974 586 Pfam PF02272 DHHA1 domain 341 462 5.7E-19 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AMF_856 a6a3b847d938f707ab14ef1b61fad974 586 Gene3D G3DSA:3.90.1640.30 72 344 9.7E-81 T 13-10-2018 AMF_856 a6a3b847d938f707ab14ef1b61fad974 586 SUPERFAMILY SSF64182 71 465 1.83E-107 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily AMF_019 b31cd35e57380fedb38c85ea633b5e09 224 Pfam PF00005 ABC transporter 23 171 1.8E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_019 b31cd35e57380fedb38c85ea633b5e09 224 SUPERFAMILY SSF52540 4 223 9.55E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_019 b31cd35e57380fedb38c85ea633b5e09 224 SMART SM00382 32 218 1.8E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_019 b31cd35e57380fedb38c85ea633b5e09 224 Gene3D G3DSA:3.40.50.300 2 224 3.7E-56 T 13-10-2018 AMF_019 b31cd35e57380fedb38c85ea633b5e09 224 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_365 5e4f5fd45293013062425f95925570b0 320 Gene3D G3DSA:1.10.1200.80 248 319 3.9E-10 T 13-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 AMF_365 5e4f5fd45293013062425f95925570b0 320 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 91 109 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMF_365 5e4f5fd45293013062425f95925570b0 320 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 10 315 9.2E-117 T 13-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 AMF_365 5e4f5fd45293013062425f95925570b0 320 PIRSF PIRSF006621 2 319 1.2E-103 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMF_365 5e4f5fd45293013062425f95925570b0 320 Pfam PF01207 Dihydrouridine synthase (Dus) 13 310 4.6E-102 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMF_365 5e4f5fd45293013062425f95925570b0 320 Gene3D G3DSA:3.20.20.70 8 244 1.5E-76 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_365 5e4f5fd45293013062425f95925570b0 320 SUPERFAMILY SSF51395 11 315 1.06E-88 T 13-10-2018 AMF_126 85d0cc1b120dd69cb99c5bcc45badae3 262 SUPERFAMILY SSF46548 131 258 5.41E-37 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMF_126 85d0cc1b120dd69cb99c5bcc45badae3 262 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 81 89 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMF_126 85d0cc1b120dd69cb99c5bcc45badae3 262 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 31 134 5.8E-32 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_126 85d0cc1b120dd69cb99c5bcc45badae3 262 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 33 253 1.4E-82 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMF_126 85d0cc1b120dd69cb99c5bcc45badae3 262 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 172 183 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMF_126 85d0cc1b120dd69cb99c5bcc45badae3 262 SUPERFAMILY SSF54292 29 129 9.42E-31 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMF_126 85d0cc1b120dd69cb99c5bcc45badae3 262 Gene3D G3DSA:3.10.20.30 19 129 3.8E-43 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AMF_126 85d0cc1b120dd69cb99c5bcc45badae3 262 Pfam PF13183 4Fe-4S dicluster domain 170 242 4.1E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMF_126 85d0cc1b120dd69cb99c5bcc45badae3 262 Gene3D G3DSA:1.10.1060.10 130 261 1.0E-57 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMF_386 7e23012d4067e2839bf8c5afd5be7acb 434 Pfam PF00375 Sodium:dicarboxylate symporter family 43 412 6.0E-29 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMF_386 7e23012d4067e2839bf8c5afd5be7acb 434 SUPERFAMILY SSF118215 42 412 1.31E-37 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMF_386 7e23012d4067e2839bf8c5afd5be7acb 434 Gene3D G3DSA:1.10.3860.10 27 427 5.2E-21 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMF_714 0c417f79331ef1c14c29bea86d33d318 291 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 30 287 3.5E-81 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 AMF_714 0c417f79331ef1c14c29bea86d33d318 291 SUPERFAMILY SSF51717 23 290 1.28E-78 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMF_714 0c417f79331ef1c14c29bea86d33d318 291 Gene3D G3DSA:3.20.20.20 14 291 9.8E-88 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMF_714 0c417f79331ef1c14c29bea86d33d318 291 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 31 46 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMF_714 0c417f79331ef1c14c29bea86d33d318 291 Pfam PF00809 Pterin binding enzyme 32 275 3.8E-70 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMF_714 0c417f79331ef1c14c29bea86d33d318 291 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 65 78 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMF_676 6c208cb5529816e45ca987b2f4eaf2d7 216 SUPERFAMILY SSF52540 3 212 4.04E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_676 6c208cb5529816e45ca987b2f4eaf2d7 216 Gene3D G3DSA:3.40.50.300 3 215 4.4E-58 T 13-10-2018 AMF_676 6c208cb5529816e45ca987b2f4eaf2d7 216 TIGRFAM TIGR01351 adk: adenylate kinase 7 211 2.1E-57 T 13-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AMF_676 6c208cb5529816e45ca987b2f4eaf2d7 216 PRINTS PR00094 Adenylate kinase signature 38 52 9.6E-24 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMF_676 6c208cb5529816e45ca987b2f4eaf2d7 216 PRINTS PR00094 Adenylate kinase signature 85 101 9.6E-24 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMF_676 6c208cb5529816e45ca987b2f4eaf2d7 216 PRINTS PR00094 Adenylate kinase signature 9 22 9.6E-24 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMF_676 6c208cb5529816e45ca987b2f4eaf2d7 216 PRINTS PR00094 Adenylate kinase signature 161 176 9.6E-24 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMF_676 6c208cb5529816e45ca987b2f4eaf2d7 216 ProSitePatterns PS00113 Adenylate kinase signature. 85 96 - T 13-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMF_676 6c208cb5529816e45ca987b2f4eaf2d7 216 Pfam PF00406 Adenylate kinase 10 189 1.2E-36 T 13-10-2018 AMF_676 6c208cb5529816e45ca987b2f4eaf2d7 216 Hamap MF_00235 Adenylate kinase [adk]. 6 212 31.999 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMF_429 552499422ef8f9e9fa426b90701cea4a 495 TIGRFAM TIGR01630 psiM2_ORF9: phage uncharacterized protein, C-terminal domain 352 475 1.0E-14 T 13-10-2018 IPR006517 Archaeophage PsiM2, terminase large subunit AMF_429 552499422ef8f9e9fa426b90701cea4a 495 Pfam PF17289 Terminase RNaseH-like domain 339 476 2.5E-10 T 13-10-2018 IPR035421 Terminase, large subunit gp17-like AMF_332 d8227507e3eb2f5d9b932f00e0ee56a7 187 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 111 132 - T 13-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_332 d8227507e3eb2f5d9b932f00e0ee56a7 187 Gene3D G3DSA:3.30.460.80 1 130 5.1E-37 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_332 d8227507e3eb2f5d9b932f00e0ee56a7 187 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 1 158 28.956 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_332 d8227507e3eb2f5d9b932f00e0ee56a7 187 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 79 137 1.0E-29 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_332 d8227507e3eb2f5d9b932f00e0ee56a7 187 SUPERFAMILY SSF143243 5 183 6.15E-53 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_332 d8227507e3eb2f5d9b932f00e0ee56a7 187 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 32 150 2.3E-42 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_332 d8227507e3eb2f5d9b932f00e0ee56a7 187 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 32 151 5.5E-41 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_1009 0982738b87f05b98f296d5d01f14062b 290 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 149 183 3.1E-6 T 13-10-2018 IPR001451 Hexapeptide repeat AMF_1009 0982738b87f05b98f296d5d01f14062b 290 Gene3D G3DSA:1.10.166.10 20 84 9.9E-11 T 13-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 AMF_1009 0982738b87f05b98f296d5d01f14062b 290 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 36 82 8.0E-11 T 13-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 AMF_1009 0982738b87f05b98f296d5d01f14062b 290 Gene3D G3DSA:2.160.10.10 104 273 2.7E-50 T 13-10-2018 AMF_1009 0982738b87f05b98f296d5d01f14062b 290 SUPERFAMILY SSF51161 38 271 7.35E-61 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily AMF_1009 0982738b87f05b98f296d5d01f14062b 290 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 192 226 2.8E-10 T 13-10-2018 IPR001451 Hexapeptide repeat AMF_602 9edfc5c44931004434d576bb92f13ff7 1760 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 339 536 4.7E-16 T 13-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 AMF_079 7873d99dfa6958b04d56e756bd412740 422 SUPERFAMILY SSF103473 20 415 6.15E-38 T 13-10-2018 IPR036259 MFS transporter superfamily AMF_079 7873d99dfa6958b04d56e756bd412740 422 Pfam PF07690 Major Facilitator Superfamily 32 359 1.1E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMF_079 7873d99dfa6958b04d56e756bd412740 422 Gene3D G3DSA:1.20.1250.20 212 417 9.4E-8 T 13-10-2018 AMF_079 7873d99dfa6958b04d56e756bd412740 422 Gene3D G3DSA:1.20.1250.20 19 211 1.2E-20 T 13-10-2018 AMF_056 ea7c72f358f93354332d09f6d240e670 398 Pfam PF01617 Surface antigen 37 398 4.1E-43 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_056 ea7c72f358f93354332d09f6d240e670 398 SUPERFAMILY SSF56925 39 398 3.4E-12 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_056 ea7c72f358f93354332d09f6d240e670 398 Gene3D G3DSA:2.40.160.20 218 365 3.3E-6 T 13-10-2018 AMF_528 36d9de5d143e3be0469992c873c9297c 239 Pfam PF00717 Peptidase S24-like 38 126 3.5E-20 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMF_528 36d9de5d143e3be0469992c873c9297c 239 Gene3D G3DSA:2.170.230.10 113 174 6.7E-55 T 13-10-2018 AMF_528 36d9de5d143e3be0469992c873c9297c 239 ProSitePatterns PS00761 Signal peptidases I signature 3. 180 193 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AMF_528 36d9de5d143e3be0469992c873c9297c 239 Gene3D G3DSA:2.10.109.10 30 218 6.7E-55 T 13-10-2018 AMF_528 36d9de5d143e3be0469992c873c9297c 239 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 17 218 1.2E-44 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMF_528 36d9de5d143e3be0469992c873c9297c 239 ProSitePatterns PS00760 Signal peptidases I lysine active site. 104 116 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 AMF_528 36d9de5d143e3be0469992c873c9297c 239 SUPERFAMILY SSF51306 30 237 1.18E-59 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMF_528 36d9de5d143e3be0469992c873c9297c 239 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 175 194 2.3E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMF_528 36d9de5d143e3be0469992c873c9297c 239 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 32 48 2.3E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMF_528 36d9de5d143e3be0469992c873c9297c 239 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 102 114 2.3E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMF_667 3107c9a5cd12727c70128c8d4ff18c5c 439 PRINTS PR00175 Sodium/alanine symporter signature 345 367 1.8E-15 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_667 3107c9a5cd12727c70128c8d4ff18c5c 439 PRINTS PR00175 Sodium/alanine symporter signature 197 216 1.8E-15 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_667 3107c9a5cd12727c70128c8d4ff18c5c 439 PRINTS PR00175 Sodium/alanine symporter signature 169 187 1.8E-15 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_667 3107c9a5cd12727c70128c8d4ff18c5c 439 PRINTS PR00175 Sodium/alanine symporter signature 405 425 1.8E-15 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_667 3107c9a5cd12727c70128c8d4ff18c5c 439 PRINTS PR00175 Sodium/alanine symporter signature 79 101 1.8E-15 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_667 3107c9a5cd12727c70128c8d4ff18c5c 439 Pfam PF01235 Sodium:alanine symporter family 47 427 5.3E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_736 acb834f0826c1e7d4a62f31affff559b 260 SUPERFAMILY SSF52317 2 259 1.62E-60 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_736 acb834f0826c1e7d4a62f31affff559b 260 PIRSF PIRSF001586 1 260 2.9E-67 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMF_736 acb834f0826c1e7d4a62f31affff559b 260 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 3 259 1.6E-59 T 13-10-2018 AMF_736 acb834f0826c1e7d4a62f31affff559b 260 SMART SM01211 1 259 3.9E-94 T 13-10-2018 AMF_736 acb834f0826c1e7d4a62f31affff559b 260 Gene3D G3DSA:3.40.50.880 1 260 1.4E-66 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_515 3f9431a17ac0c80b9f1027ac260fa3f5 160 Pfam PF00578 AhpC/TSA family 6 134 6.5E-33 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMF_515 3f9431a17ac0c80b9f1027ac260fa3f5 160 Gene3D G3DSA:3.40.30.10 2 155 7.1E-46 T 13-10-2018 AMF_515 3f9431a17ac0c80b9f1027ac260fa3f5 160 SUPERFAMILY SSF52833 5 155 1.04E-46 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_515 3f9431a17ac0c80b9f1027ac260fa3f5 160 PIRSF PIRSF000239 1 159 4.1E-27 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMF_752 b615e3eb33632e8ab0002c8078fefcfa 316 SUPERFAMILY SSF56349 14 299 1.12E-48 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMF_752 b615e3eb33632e8ab0002c8078fefcfa 316 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 15 100 1.4E-12 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMF_752 b615e3eb33632e8ab0002c8078fefcfa 316 Gene3D G3DSA:1.10.150.130 10 110 4.3E-16 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal AMF_752 b615e3eb33632e8ab0002c8078fefcfa 316 Pfam PF00589 Phage integrase family 124 295 8.4E-37 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMF_752 b615e3eb33632e8ab0002c8078fefcfa 316 Gene3D G3DSA:1.10.443.10 124 301 2.0E-49 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMF_995 92b3f5652bff383e27cfa05eac87a30e 279 Gene3D G3DSA:2.60.40.2500 177 279 7.3E-14 T 13-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily AMF_995 92b3f5652bff383e27cfa05eac87a30e 279 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 7 278 2.6E-84 T 13-10-2018 IPR014148 P-type conjugative transfer protein VirB9 AMF_995 92b3f5652bff383e27cfa05eac87a30e 279 Pfam PF03524 Conjugal transfer protein 37 277 5.9E-54 T 13-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX AMF_733 b41f21cb09f55a95a983d9c97ecf1064 214 SUPERFAMILY SSF53328 7 200 2.09E-56 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_733 b41f21cb09f55a95a983d9c97ecf1064 214 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 8 188 29.027 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AMF_733 b41f21cb09f55a95a983d9c97ecf1064 214 Gene3D G3DSA:3.40.50.170 2 213 6.5E-77 T 13-10-2018 AMF_733 b41f21cb09f55a95a983d9c97ecf1064 214 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 8 186 1.4E-62 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AMF_733 b41f21cb09f55a95a983d9c97ecf1064 214 Pfam PF00551 Formyl transferase 8 182 6.5E-50 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_325 180a3d00bd63d1f1ee03a3afb034c200 111 Gene3D G3DSA:1.10.260.40 11 72 6.9E-17 T 13-10-2018 AMF_325 180a3d00bd63d1f1ee03a3afb034c200 111 SUPERFAMILY SSF47413 15 83 2.36E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMF_325 180a3d00bd63d1f1ee03a3afb034c200 111 Pfam PF13744 Helix-turn-helix domain 15 81 5.7E-14 T 13-10-2018 IPR039554 HigA2-like, helix-turn-helix domain AMF_723 e24dd07ac5287c0bd192efe25653aa95 230 Gene3D G3DSA:1.10.150.20 50 91 1.8E-6 T 13-10-2018 AMF_723 e24dd07ac5287c0bd192efe25653aa95 230 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 179 184 - T 13-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site AMF_723 e24dd07ac5287c0bd192efe25653aa95 230 Pfam PF04002 RadC-like JAB domain 110 228 1.7E-38 T 13-10-2018 IPR025657 RadC-like JAB domain AMF_723 e24dd07ac5287c0bd192efe25653aa95 230 SUPERFAMILY SSF47781 51 108 2.89E-6 T 13-10-2018 IPR010994 RuvA domain 2-like AMF_723 e24dd07ac5287c0bd192efe25653aa95 230 SUPERFAMILY SSF102712 151 204 1.06E-5 T 13-10-2018 AMF_723 e24dd07ac5287c0bd192efe25653aa95 230 Gene3D G3DSA:3.40.140.10 106 230 2.8E-39 T 13-10-2018 AMF_723 e24dd07ac5287c0bd192efe25653aa95 230 TIGRFAM TIGR00608 radc: DNA repair protein RadC 17 230 5.8E-56 T 13-10-2018 IPR001405 Uncharacterised protein family UPF0758 AMF_855 64e4baf2b8e8615cbd91ec0d920108c7 483 SUPERFAMILY SSF53659 5 344 1.6E-109 T 13-10-2018 AMF_855 64e4baf2b8e8615cbd91ec0d920108c7 483 TIGRFAM TIGR02924 ICDH_alpha: isocitrate dehydrogenase 8 480 1.5E-224 T 13-10-2018 IPR014273 Isocitrate dehydrogenase, alphaproteobacteria-type GO:0004450|GO:0006097|GO:0006099|GO:0046872|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMF_855 64e4baf2b8e8615cbd91ec0d920108c7 483 Gene3D G3DSA:3.40.718.10 3 365 2.4E-118 T 13-10-2018 AMF_855 64e4baf2b8e8615cbd91ec0d920108c7 483 SMART SM01329 9 340 2.4E-136 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMF_855 64e4baf2b8e8615cbd91ec0d920108c7 483 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 231 250 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AMF_855 64e4baf2b8e8615cbd91ec0d920108c7 483 Gene3D G3DSA:3.30.70.1570 374 482 1.1E-11 T 13-10-2018 AMF_855 64e4baf2b8e8615cbd91ec0d920108c7 483 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 10 340 5.3E-84 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMF_691 60d13397b7fd982ed38af833dc6c384c 112 SUPERFAMILY SSF54843 3 109 1.26E-34 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AMF_691 60d13397b7fd982ed38af833dc6c384c 112 Pfam PF00237 Ribosomal protein L22p/L17e 7 108 1.0E-28 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AMF_691 60d13397b7fd982ed38af833dc6c384c 112 Gene3D G3DSA:3.90.470.10 2 112 2.7E-35 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AMF_691 60d13397b7fd982ed38af833dc6c384c 112 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 11 107 1.8E-30 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_691 60d13397b7fd982ed38af833dc6c384c 112 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 3 112 23.567 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_997 04a56223f0db514274d690a9c2b13c27 377 Pfam PF00925 GTP cyclohydrolase II 201 353 1.3E-44 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMF_997 04a56223f0db514274d690a9c2b13c27 377 SUPERFAMILY SSF142695 202 355 1.31E-43 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMF_997 04a56223f0db514274d690a9c2b13c27 377 Gene3D G3DSA:3.40.50.10990 187 357 3.7E-50 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMF_502 8e8fe5b29123ac0101fe544d00525a12 201 Gene3D G3DSA:3.40.50.150 4 191 9.5E-60 T 13-10-2018 AMF_502 8e8fe5b29123ac0101fe544d00525a12 201 SUPERFAMILY SSF53335 7 186 1.45E-41 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_502 8e8fe5b29123ac0101fe544d00525a12 201 PIRSF PIRSF005461 1 196 5.1E-66 T 13-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 AMF_502 8e8fe5b29123ac0101fe544d00525a12 201 Pfam PF01728 FtsJ-like methyltransferase 8 184 1.7E-55 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AMF_502 8e8fe5b29123ac0101fe544d00525a12 201 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 1 185 25.344 T 13-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 AMF_013 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 SUPERFAMILY SSF53597 147 351 6.81E-47 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMF_013 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 90 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMF_013 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 8 320 2.5E-95 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 AMF_013 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 PIRSF PIRSF006769 1 358 3.3E-131 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 AMF_013 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 Gene3D G3DSA:3.40.430.10 138 357 4.2E-54 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMF_013 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 SUPERFAMILY SSF53927 4 146 4.42E-43 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMF_013 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 101 9.7E-18 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AMF_013 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 Pfam PF01872 RibD C-terminal domain 149 349 6.8E-35 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMF_013 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 Gene3D G3DSA:3.40.140.10 1 137 5.3E-42 T 13-10-2018 AMF_545 cacdaedec346c9fc3390a1c5fdbe7a97 260 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 16 259 16.691 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_545 cacdaedec346c9fc3390a1c5fdbe7a97 260 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 21 48 2.7E-38 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_545 cacdaedec346c9fc3390a1c5fdbe7a97 260 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 100 118 2.7E-38 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_545 cacdaedec346c9fc3390a1c5fdbe7a97 260 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 118 144 2.7E-38 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_545 cacdaedec346c9fc3390a1c5fdbe7a97 260 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 175 203 2.7E-38 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_545 cacdaedec346c9fc3390a1c5fdbe7a97 260 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 23 247 3.2E-62 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_545 cacdaedec346c9fc3390a1c5fdbe7a97 260 ProSitePatterns PS01218 TatC family signature. 175 194 - T 13-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site AMF_545 cacdaedec346c9fc3390a1c5fdbe7a97 260 Pfam PF00902 Sec-independent protein translocase protein (TatC) 25 242 7.6E-64 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_1015 d19d09ebf37380cfe2220c786ef266b5 186 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMF_1015 d19d09ebf37380cfe2220c786ef266b5 186 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 2 167 5.0E-44 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMF_1015 d19d09ebf37380cfe2220c786ef266b5 186 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 174 31.013 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMF_1015 d19d09ebf37380cfe2220c786ef266b5 186 Gene3D G3DSA:3.40.50.1470 1 181 8.1E-53 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AMF_1015 d19d09ebf37380cfe2220c786ef266b5 186 SUPERFAMILY SSF53178 2 179 1.01E-53 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AMF_1015 d19d09ebf37380cfe2220c786ef266b5 186 Pfam PF01195 Peptidyl-tRNA hydrolase 3 174 6.8E-46 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMF_1015 d19d09ebf37380cfe2220c786ef266b5 186 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMF_316 9dad1894c35eb156737c42a3f3f0f60b 234 Pfam PF01467 Cytidylyltransferase-like 59 230 2.8E-20 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMF_316 9dad1894c35eb156737c42a3f3f0f60b 234 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 57 115 2.2E-8 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMF_316 9dad1894c35eb156737c42a3f3f0f60b 234 SUPERFAMILY SSF52374 56 231 3.0E-36 T 13-10-2018 AMF_316 9dad1894c35eb156737c42a3f3f0f60b 234 Gene3D G3DSA:3.40.50.620 55 233 5.0E-36 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_022 ebd7ee89f40d026eebb4d3385a5ef679 504 Pfam PF00361 Proton-conducting membrane transporter 134 429 1.5E-55 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_022 ebd7ee89f40d026eebb4d3385a5ef679 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 140 159 1.4E-11 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_022 ebd7ee89f40d026eebb4d3385a5ef679 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 242 266 1.4E-11 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_022 ebd7ee89f40d026eebb4d3385a5ef679 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 334 353 1.4E-11 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_022 ebd7ee89f40d026eebb4d3385a5ef679 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 387 413 1.4E-11 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_022 ebd7ee89f40d026eebb4d3385a5ef679 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 170 194 1.4E-11 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_578 bb197faa2cd3545438983edcea9d20cc 253 Pfam PF02167 Cytochrome C1 family 36 250 1.6E-92 T 13-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMF_578 bb197faa2cd3545438983edcea9d20cc 253 Gene3D G3DSA:1.10.760.10 26 217 7.9E-79 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMF_578 bb197faa2cd3545438983edcea9d20cc 253 SUPERFAMILY SSF46626 29 216 2.47E-64 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMF_578 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 132 156 2.5E-61 T 13-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMF_578 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 198 217 2.5E-61 T 13-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMF_578 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 34 53 2.5E-61 T 13-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMF_578 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 178 197 2.5E-61 T 13-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMF_578 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 54 73 2.5E-61 T 13-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMF_578 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 99 119 2.5E-61 T 13-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMF_578 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 217 232 2.5E-61 T 13-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMF_092 9fa988463e34402bae9d524b67034de2 171 SUPERFAMILY SSF53098 25 164 3.54E-53 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AMF_092 9fa988463e34402bae9d524b67034de2 171 Hamap MF_00042 Ribonuclease H [rnhA]. 23 171 31.652 T 13-10-2018 IPR022892 Ribonuclease HI GO:0004523 AMF_092 9fa988463e34402bae9d524b67034de2 171 Pfam PF00075 RNase H 25 162 2.4E-46 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 AMF_092 9fa988463e34402bae9d524b67034de2 171 Gene3D G3DSA:3.30.420.10 21 168 5.0E-53 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMF_895 68246a55c9fce3f170a26b2235b31bcf 409 Pfam PF08886 Glutamate-cysteine ligase 9 393 6.1E-140 T 13-10-2018 IPR011718 Glutamate--cysteine ligase GshA AMF_895 68246a55c9fce3f170a26b2235b31bcf 409 TIGRFAM TIGR02049 gshA_ferroox: glutamate--cysteine ligase 14 396 1.8E-113 T 13-10-2018 IPR011718 Glutamate--cysteine ligase GshA AMF_895 68246a55c9fce3f170a26b2235b31bcf 409 Gene3D G3DSA:3.40.50.11280 56 191 2.3E-32 T 13-10-2018 AMF_740 56302e56e173acec5a878d606bd7fd14 151 Pfam PF07310 PAS domain 12 145 3.6E-12 T 13-10-2018 IPR009922 Protein of unknown function DUF1457 AMF_905 249056cc3c0e92002f8718442378d884 410 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 10 404 2.1E-175 T 13-10-2018 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: R-HSA-189451 AMF_905 249056cc3c0e92002f8718442378d884 410 Pfam PF00155 Aminotransferase class I and II 54 392 3.7E-62 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMF_905 249056cc3c0e92002f8718442378d884 410 SUPERFAMILY SSF53383 8 401 4.6E-103 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMF_905 249056cc3c0e92002f8718442378d884 410 Gene3D G3DSA:3.90.1150.10 23 391 1.9E-148 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMF_905 249056cc3c0e92002f8718442378d884 410 Gene3D G3DSA:3.40.640.10 69 301 1.9E-148 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMF_905 249056cc3c0e92002f8718442378d884 410 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 248 257 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 Gene3D G3DSA:2.170.220.10 127 237 3.8E-138 T 13-10-2018 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 Hamap MF_01228 Methionine--tRNA ligase [metG]. 10 518 42.355 T 13-10-2018 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 Pfam PF09334 tRNA synthetases class I (M) 157 374 6.5E-61 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 SUPERFAMILY SSF47323 363 517 9.35E-35 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 PRINTS PR01041 Methionyl-tRNA synthetase signature 234 245 4.7E-30 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 PRINTS PR01041 Methionyl-tRNA synthetase signature 270 285 4.7E-30 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 PRINTS PR01041 Methionyl-tRNA synthetase signature 362 373 4.7E-30 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 PRINTS PR01041 Methionyl-tRNA synthetase signature 50 64 4.7E-30 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 PRINTS PR01041 Methionyl-tRNA synthetase signature 98 109 4.7E-30 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 PRINTS PR01041 Methionyl-tRNA synthetase signature 18 31 4.7E-30 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 SUPERFAMILY SSF52374 13 360 1.34E-98 T 13-10-2018 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 Gene3D G3DSA:3.40.50.620 16 347 3.8E-138 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 Gene3D G3DSA:1.10.730.10 353 521 1.9E-42 T 13-10-2018 AMF_762 53f4235f30ea6862faee785fe0ebda9b 524 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 70 2.8E-8 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMF_1034 87ad7d4f5468c3c2738213741a1350a0 50 Gene3D G3DSA:2.20.25.10 1 50 2.3E-20 T 13-10-2018 AMF_1034 87ad7d4f5468c3c2738213741a1350a0 50 SUPERFAMILY SSF158997 1 47 1.31E-15 T 13-10-2018 AMF_1034 87ad7d4f5468c3c2738213741a1350a0 50 Pfam PF03966 Trm112p-like protein 1 33 3.2E-4 T 13-10-2018 IPR005651 Trm112-like AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 SUPERFAMILY SSF53067 7 123 1.2E-28 T 13-10-2018 AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 99 118 2.7E-46 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 271 280 2.7E-46 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 78 98 2.7E-46 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 8 21 2.7E-46 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 156 177 2.7E-46 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 133 145 2.7E-46 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 Gene3D G3DSA:3.30.420.40 131 301 8.1E-118 T 13-10-2018 AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 Pfam PF00814 Glycoprotease family 27 315 3.0E-91 T 13-10-2018 IPR000905 Gcp-like domain AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 7 321 2.9E-121 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 SUPERFAMILY SSF53067 104 317 2.1E-37 T 13-10-2018 AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 5 339 58.872 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 Gene3D G3DSA:3.30.420.40 7 323 8.1E-118 T 13-10-2018 AMF_418 74bd2f0c911e6c84bf396394d1acde78 341 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 8 314 2.3E-97 T 13-10-2018 IPR017861 Kae1/TsaD family AMF_336 353e0310bb7457d4267316fcbdc90956 177 Gene3D G3DSA:1.10.940.10 18 156 2.2E-25 T 13-10-2018 IPR035926 NusB-like superfamily AMF_336 353e0310bb7457d4267316fcbdc90956 177 Pfam PF01029 NusB family 22 151 2.1E-24 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMF_336 353e0310bb7457d4267316fcbdc90956 177 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 21 152 5.5E-30 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 AMF_336 353e0310bb7457d4267316fcbdc90956 177 SUPERFAMILY SSF48013 18 151 7.85E-27 T 13-10-2018 IPR035926 NusB-like superfamily AMF_713 d2d5bc8d365cb11944b794dbf3fedab7 800 Pfam PF00664 ABC transporter transmembrane region 37 293 4.6E-9 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMF_713 d2d5bc8d365cb11944b794dbf3fedab7 800 Gene3D G3DSA:1.20.1560.10 21 326 3.4E-34 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMF_713 d2d5bc8d365cb11944b794dbf3fedab7 800 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_713 d2d5bc8d365cb11944b794dbf3fedab7 800 Pfam PF00005 ABC transporter 361 508 7.9E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_713 d2d5bc8d365cb11944b794dbf3fedab7 800 SUPERFAMILY SSF90123 17 331 6.8E-42 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMF_713 d2d5bc8d365cb11944b794dbf3fedab7 800 SUPERFAMILY SSF52540 332 569 9.47E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_713 d2d5bc8d365cb11944b794dbf3fedab7 800 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 27 569 8.3E-202 T 13-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 AMF_713 d2d5bc8d365cb11944b794dbf3fedab7 800 SMART SM00382 369 571 3.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_713 d2d5bc8d365cb11944b794dbf3fedab7 800 Gene3D G3DSA:3.40.50.300 338 584 2.5E-63 T 13-10-2018 AMF_684 ec712a59b3d950932167e058796af4f4 179 SUPERFAMILY SSF55282 9 178 8.95E-67 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_684 ec712a59b3d950932167e058796af4f4 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 2.6E-38 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_684 ec712a59b3d950932167e058796af4f4 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 38.088 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_684 ec712a59b3d950932167e058796af4f4 179 PIRSF PIRSF002161 3 179 1.6E-57 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_684 ec712a59b3d950932167e058796af4f4 179 Gene3D G3DSA:3.30.1440.10 3 179 2.1E-68 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_684 ec712a59b3d950932167e058796af4f4 179 Pfam PF00281 Ribosomal protein L5 24 80 1.9E-21 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_115 93f54eb3d6199fe92031082316a8dd94 162 ProSitePatterns PS00194 Thioredoxin family active site. 57 75 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMF_115 93f54eb3d6199fe92031082316a8dd94 162 SUPERFAMILY SSF52833 32 156 4.55E-23 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_115 93f54eb3d6199fe92031082316a8dd94 162 Gene3D G3DSA:3.40.30.10 25 161 5.2E-21 T 13-10-2018 AMF_095 2188742a2f30c30441645388269bd188 183 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 182 3.9E-51 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AMF_095 2188742a2f30c30441645388269bd188 183 SUPERFAMILY SSF55194 1 182 1.44E-56 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 AMF_095 2188742a2f30c30441645388269bd188 183 Pfam PF01765 Ribosome recycling factor 22 182 4.4E-47 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 AMF_095 2188742a2f30c30441645388269bd188 183 Gene3D G3DSA:1.10.132.20 12 181 2.5E-53 T 13-10-2018 AMF_095 2188742a2f30c30441645388269bd188 183 Gene3D G3DSA:3.30.1360.40 31 104 2.5E-53 T 13-10-2018 AMF_368 766ecec7e7dba9d8ea4feab4d8a1591c 118 SUPERFAMILY SSF54913 3 102 4.08E-30 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMF_368 766ecec7e7dba9d8ea4feab4d8a1591c 118 Gene3D G3DSA:3.30.70.120 1 110 4.9E-30 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMF_368 766ecec7e7dba9d8ea4feab4d8a1591c 118 Pfam PF03091 CutA1 divalent ion tolerance protein 7 102 6.5E-27 T 13-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 AMF_690 619e070e13a7f13af91f3a8d61ef13f9 211 Pfam PF07650 KH domain 38 109 6.0E-18 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_690 619e070e13a7f13af91f3a8d61ef13f9 211 Gene3D G3DSA:3.30.300.20 17 106 3.8E-24 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta AMF_690 619e070e13a7f13af91f3a8d61ef13f9 211 SUPERFAMILY SSF54821 106 205 1.31E-38 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_690 619e070e13a7f13af91f3a8d61ef13f9 211 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 206 4.5E-88 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMF_690 619e070e13a7f13af91f3a8d61ef13f9 211 Pfam PF00189 Ribosomal protein S3, C-terminal domain 119 201 3.3E-38 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_690 619e070e13a7f13af91f3a8d61ef13f9 211 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 205 36.833 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMF_690 619e070e13a7f13af91f3a8d61ef13f9 211 ProSitePatterns PS00548 Ribosomal protein S3 signature. 162 196 - T 13-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_690 619e070e13a7f13af91f3a8d61ef13f9 211 Gene3D G3DSA:3.30.1140.32 107 206 7.6E-44 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_690 619e070e13a7f13af91f3a8d61ef13f9 211 SMART SM00322 59 124 2.0E-4 T 13-10-2018 IPR004087 K Homology domain GO:0003676 AMF_690 619e070e13a7f13af91f3a8d61ef13f9 211 SUPERFAMILY SSF54814 2 105 1.05E-31 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMF_132 d3a45ea7e8d285366a18f2f368fb4178 244 Gene3D G3DSA:3.30.63.10 75 134 5.4E-57 T 13-10-2018 AMF_132 d3a45ea7e8d285366a18f2f368fb4178 244 SMART SM00072 42 225 5.0E-33 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMF_132 d3a45ea7e8d285366a18f2f368fb4178 244 Pfam PF00625 Guanylate kinase 46 221 2.4E-35 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMF_132 d3a45ea7e8d285366a18f2f368fb4178 244 ProSitePatterns PS00856 Guanylate kinase-like signature. 78 95 - T 13-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 AMF_132 d3a45ea7e8d285366a18f2f368fb4178 244 Gene3D G3DSA:3.40.50.300 43 227 5.4E-57 T 13-10-2018 AMF_132 d3a45ea7e8d285366a18f2f368fb4178 244 SUPERFAMILY SSF52540 42 227 3.88E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_132 d3a45ea7e8d285366a18f2f368fb4178 244 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 44 221 5.9E-57 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AMF_540 0c54536012039c90d848f34021397d51 237 Pfam PF03741 Integral membrane protein TerC family 13 199 6.9E-38 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMF_246 fa4782be06f6604212ea0cc0e03b91d5 158 Pfam PF02472 Biopolymer transport protein ExbD/TolR 24 144 2.7E-20 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 AMF_246 fa4782be06f6604212ea0cc0e03b91d5 158 Gene3D G3DSA:3.30.420.270 74 141 1.0E-16 T 13-10-2018 AMF_1021 f7102abf4452e54f0717615a5073eded 400 Gene3D G3DSA:3.40.630.10 28 381 2.0E-98 T 13-10-2018 AMF_1021 f7102abf4452e54f0717615a5073eded 400 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 120 154 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMF_1021 f7102abf4452e54f0717615a5073eded 400 SUPERFAMILY SSF55031 199 305 3.89E-22 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMF_1021 f7102abf4452e54f0717615a5073eded 400 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 27 392 1.1E-113 T 13-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AMF_1021 f7102abf4452e54f0717615a5073eded 400 SUPERFAMILY SSF53187 14 392 1.44E-56 T 13-10-2018 AMF_1021 f7102abf4452e54f0717615a5073eded 400 Gene3D G3DSA:3.30.70.360 199 312 2.0E-98 T 13-10-2018 AMF_1021 f7102abf4452e54f0717615a5073eded 400 Pfam PF07687 Peptidase dimerisation domain 195 301 3.2E-17 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain AMF_1021 f7102abf4452e54f0717615a5073eded 400 Pfam PF01546 Peptidase family M20/M25/M40 87 390 1.5E-35 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 AMF_1021 f7102abf4452e54f0717615a5073eded 400 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 23 394 44.826 T 13-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AMF_1035 e18eb754841ba3102f3a697b650cb75c 147 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 7 133 4.0E-60 T 13-10-2018 IPR020143 Uncharacterised protein family, RP436 AMF_843 c82028eb4388b35c7d89cba9188450b7 165 Pfam PF00430 ATP synthase B/B' CF(0) 11 135 3.8E-6 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMF_776 423884bbf38b3ca67fca5677bb721e30 215 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 13 76 1.3E-10 T 13-10-2018 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 AMF_776 423884bbf38b3ca67fca5677bb721e30 215 SMART SM00530 13 69 1.3E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMF_776 423884bbf38b3ca67fca5677bb721e30 215 Gene3D G3DSA:2.10.109.10 106 214 1.1E-6 T 13-10-2018 AMF_776 423884bbf38b3ca67fca5677bb721e30 215 Gene3D G3DSA:1.10.260.40 3 74 1.1E-10 T 13-10-2018 AMF_776 423884bbf38b3ca67fca5677bb721e30 215 SUPERFAMILY SSF51306 123 213 4.84E-13 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMF_776 423884bbf38b3ca67fca5677bb721e30 215 SUPERFAMILY SSF47413 9 74 1.1E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMF_619 a5118943b31d43ee677eaa91ba97af93 307 Pfam PF07722 Peptidase C26 71 270 2.9E-4 T 13-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 AMF_619 a5118943b31d43ee677eaa91ba97af93 307 Gene3D G3DSA:3.40.50.880 69 285 6.5E-11 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_619 a5118943b31d43ee677eaa91ba97af93 307 SUPERFAMILY SSF52317 64 273 1.86E-11 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_719 d2d9c53db4a40e48bf842823c13871c9 216 Gene3D G3DSA:3.40.50.10300 1 215 3.0E-55 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMF_719 d2d9c53db4a40e48bf842823c13871c9 216 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 2 181 2.6E-51 T 13-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMF_719 d2d9c53db4a40e48bf842823c13871c9 216 SUPERFAMILY SSF102645 3 212 7.19E-57 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMF_773 656e36c2b8c554e157cc85bc315d2885 379 SUPERFAMILY SSF55979 261 379 4.26E-28 T 13-10-2018 AMF_773 656e36c2b8c554e157cc85bc315d2885 379 PIRSF PIRSF000804 12 379 6.7E-96 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMF_773 656e36c2b8c554e157cc85bc315d2885 379 SMART SM00480 28 375 1.6E-87 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMF_773 656e36c2b8c554e157cc85bc315d2885 379 Gene3D G3DSA:3.10.150.10 14 256 1.5E-98 T 13-10-2018 AMF_773 656e36c2b8c554e157cc85bc315d2885 379 Gene3D G3DSA:3.70.10.10 148 377 1.5E-98 T 13-10-2018 AMF_773 656e36c2b8c554e157cc85bc315d2885 379 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 14 129 3.0E-25 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMF_773 656e36c2b8c554e157cc85bc315d2885 379 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 260 378 2.9E-26 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMF_773 656e36c2b8c554e157cc85bc315d2885 379 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 14 378 5.0E-83 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMF_773 656e36c2b8c554e157cc85bc315d2885 379 SUPERFAMILY SSF55979 14 130 1.28E-20 T 13-10-2018 AMF_773 656e36c2b8c554e157cc85bc315d2885 379 SUPERFAMILY SSF55979 138 258 2.07E-23 T 13-10-2018 AMF_773 656e36c2b8c554e157cc85bc315d2885 379 Pfam PF02767 DNA polymerase III beta subunit, central domain 141 257 9.5E-28 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMF_1024 308b45cf8df9b77c2662893d5f37a830 148 Pfam PF03653 Uncharacterised protein family (UPF0093) 7 147 3.7E-47 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMF_1024 308b45cf8df9b77c2662893d5f37a830 148 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 8 147 2.8E-41 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMF_1024 308b45cf8df9b77c2662893d5f37a830 148 PIRSF PIRSF004638 2 148 2.0E-42 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMF_425 9552d84fbab7ddcfee998c017bc57194 146 Pfam PF02502 Ribose/Galactose Isomerase 7 143 2.5E-44 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMF_425 9552d84fbab7ddcfee998c017bc57194 146 PIRSF PIRSF005384 5 145 9.1E-48 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMF_425 9552d84fbab7ddcfee998c017bc57194 146 SUPERFAMILY SSF89623 6 144 1.7E-46 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMF_425 9552d84fbab7ddcfee998c017bc57194 146 Gene3D G3DSA:3.40.1400.10 2 144 4.8E-51 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMF_425 9552d84fbab7ddcfee998c017bc57194 146 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 7 143 1.6E-46 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMF_527 f01dd637dbe10644a351f2f1848aa544 160 Pfam PF12838 4Fe-4S dicluster domain 60 114 1.2E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMF_527 f01dd637dbe10644a351f2f1848aa544 160 SUPERFAMILY SSF54862 34 141 2.26E-26 T 13-10-2018 AMF_527 f01dd637dbe10644a351f2f1848aa544 160 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 17 138 9.1E-51 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_527 f01dd637dbe10644a351f2f1848aa544 160 Gene3D G3DSA:3.30.70.3270 34 157 2.1E-41 T 13-10-2018 AMF_527 f01dd637dbe10644a351f2f1848aa544 160 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 8 142 27.719 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_527 f01dd637dbe10644a351f2f1848aa544 160 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 61 72 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMF_527 f01dd637dbe10644a351f2f1848aa544 160 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 100 111 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMF_520 84a24c3bd1ac71ace73a3ccf79ed4347 264 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 20 262 30.223 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_520 84a24c3bd1ac71ace73a3ccf79ed4347 264 Pfam PF01709 Transcriptional regulator 22 256 6.1E-80 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_520 84a24c3bd1ac71ace73a3ccf79ed4347 264 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 18 257 5.7E-79 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_520 84a24c3bd1ac71ace73a3ccf79ed4347 264 Gene3D G3DSA:3.30.70.980 101 256 1.2E-41 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_520 84a24c3bd1ac71ace73a3ccf79ed4347 264 Gene3D G3DSA:3.30.70.980 150 227 1.2E-41 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_520 84a24c3bd1ac71ace73a3ccf79ed4347 264 Gene3D G3DSA:1.10.10.200 15 98 2.8E-31 T 13-10-2018 IPR017856 Integrase-like, N-terminal AMF_520 84a24c3bd1ac71ace73a3ccf79ed4347 264 SUPERFAMILY SSF75625 22 260 6.67E-76 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_897 75915e24391753486f57313920763c83 529 SUPERFAMILY SSF54810 400 529 4.84E-46 T 13-10-2018 AMF_897 75915e24391753486f57313920763c83 529 Gene3D G3DSA:3.40.50.620 210 400 2.3E-66 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_897 75915e24391753486f57313920763c83 529 Gene3D G3DSA:3.40.50.880 1 209 2.9E-47 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_897 75915e24391753486f57313920763c83 529 SUPERFAMILY SSF52317 2 199 1.04E-46 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_897 75915e24391753486f57313920763c83 529 Gene3D G3DSA:3.30.300.10 401 529 9.5E-48 T 13-10-2018 AMF_897 75915e24391753486f57313920763c83 529 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 210 529 3.5E-132 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMF_897 75915e24391753486f57313920763c83 529 SUPERFAMILY SSF52402 195 441 4.41E-47 T 13-10-2018 AMF_897 75915e24391753486f57313920763c83 529 Pfam PF00117 Glutamine amidotransferase class-I 6 197 2.5E-36 T 13-10-2018 IPR017926 Glutamine amidotransferase AMF_897 75915e24391753486f57313920763c83 529 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 1 529 46.894 T 13-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 AMF_897 75915e24391753486f57313920763c83 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 82 93 1.3E-7 T 13-10-2018 AMF_897 75915e24391753486f57313920763c83 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 175 188 1.3E-7 T 13-10-2018 AMF_897 75915e24391753486f57313920763c83 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 50 59 1.3E-7 T 13-10-2018 AMF_897 75915e24391753486f57313920763c83 529 Pfam PF00958 GMP synthase C terminal domain 429 528 6.6E-39 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMF_897 75915e24391753486f57313920763c83 529 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 4 201 5.9E-57 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMF_487 241a1fb6f2519c67586dfd3cb5f29b04 136 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 27 135 9.2E-29 T 13-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AMF_487 241a1fb6f2519c67586dfd3cb5f29b04 136 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 117 134 - T 13-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AMF_487 241a1fb6f2519c67586dfd3cb5f29b04 136 Gene3D G3DSA:2.60.300.12 26 136 1.4E-28 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMF_487 241a1fb6f2519c67586dfd3cb5f29b04 136 SUPERFAMILY SSF89360 27 125 1.16E-22 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMF_487 241a1fb6f2519c67586dfd3cb5f29b04 136 Pfam PF01521 Iron-sulphur cluster biosynthesis 27 132 6.6E-12 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMF_739 28e9a5972cd699f2bd7bcbc17cae6f59 232 Gene3D G3DSA:2.70.70.10 101 229 1.1E-23 T 13-10-2018 IPR011055 Duplicated hybrid motif AMF_739 28e9a5972cd699f2bd7bcbc17cae6f59 232 Pfam PF01551 Peptidase family M23 119 215 1.0E-19 T 13-10-2018 IPR016047 Peptidase M23 AMF_739 28e9a5972cd699f2bd7bcbc17cae6f59 232 SUPERFAMILY SSF51261 115 219 5.23E-25 T 13-10-2018 IPR011055 Duplicated hybrid motif AMF_005 f264b949fec1c6b273adc5714a82af88 357 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 8 352 8.4E-109 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMF_005 f264b949fec1c6b273adc5714a82af88 357 Pfam PF01098 Cell cycle protein 11 355 3.4E-89 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMF_802 8abc456fef48ff6b2576f0b6c0396a35 867 Gene3D G3DSA:2.40.160.20 700 835 2.2E-11 T 13-10-2018 AMF_802 8abc456fef48ff6b2576f0b6c0396a35 867 Pfam PF01617 Surface antigen 714 867 2.3E-64 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_802 8abc456fef48ff6b2576f0b6c0396a35 867 Pfam PF01617 Surface antigen 54 157 1.8E-16 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_802 8abc456fef48ff6b2576f0b6c0396a35 867 SUPERFAMILY SSF56925 748 867 8.89E-16 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_808 d49ac8244daafa242ec5229f7fafaf15 207 PIRSF PIRSF005413 1 193 5.9E-66 T 13-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_808 d49ac8244daafa242ec5229f7fafaf15 207 Gene3D G3DSA:2.60.370.10 53 193 1.6E-47 T 13-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_808 d49ac8244daafa242ec5229f7fafaf15 207 Hamap MF_00155 Cytochrome c oxidase assembly protein CtaG [ctaG]. 3 182 33.972 T 13-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_808 d49ac8244daafa242ec5229f7fafaf15 207 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 29 174 2.8E-51 T 13-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_808 d49ac8244daafa242ec5229f7fafaf15 207 SUPERFAMILY SSF110111 59 178 1.16E-43 T 13-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_353 731c72d9d7532621fcc0d70e57686858 249 PIRSF PIRSF033239 37 244 1.6E-62 T 13-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD AMF_353 731c72d9d7532621fcc0d70e57686858 249 Pfam PF06055 Exopolysaccharide synthesis, ExoD 50 229 4.6E-55 T 13-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD AMF_375 40023d93e413f5ec3fc1febdc1120c47 120 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 116 1.9E-20 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMF_375 40023d93e413f5ec3fc1febdc1120c47 120 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 118 8.6E-26 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMF_375 40023d93e413f5ec3fc1febdc1120c47 120 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 118 9.0E-58 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMF_375 40023d93e413f5ec3fc1febdc1120c47 120 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 120 22.647 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMF_375 40023d93e413f5ec3fc1febdc1120c47 120 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 118 1.9E-23 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMF_375 40023d93e413f5ec3fc1febdc1120c47 120 SUPERFAMILY SSF56214 2 118 2.09E-28 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMF_375 40023d93e413f5ec3fc1febdc1120c47 120 Gene3D G3DSA:3.90.470.20 1 119 6.5E-33 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMF_993 0a50098ef20bd45e6f2c9310b4b05c08 337 SUPERFAMILY SSF52540 14 316 9.93E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_993 0a50098ef20bd45e6f2c9310b4b05c08 337 Gene3D G3DSA:3.40.50.300 120 335 3.8E-68 T 13-10-2018 AMF_993 0a50098ef20bd45e6f2c9310b4b05c08 337 Pfam PF00437 Type II/IV secretion system protein 18 317 2.9E-85 T 13-10-2018 IPR001482 Type II/IV secretion system protein AMF_993 0a50098ef20bd45e6f2c9310b4b05c08 337 Gene3D G3DSA:3.30.450.90 12 118 6.5E-32 T 13-10-2018 AMF_993 0a50098ef20bd45e6f2c9310b4b05c08 337 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 24 329 4.0E-131 T 13-10-2018 IPR014155 Type IV secretion system protein VirB11 GO:0043684|GO:0044097 AMF_141 0b02900cf4b5d54ca0a685382158708b 263 Gene3D G3DSA:3.40.50.1820 29 263 1.5E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AMF_141 0b02900cf4b5d54ca0a685382158708b 263 SUPERFAMILY SSF53474 47 251 9.86E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AMF_141 0b02900cf4b5d54ca0a685382158708b 263 Pfam PF12146 Serine aminopeptidase, S33 60 173 2.1E-12 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 AMF_788 e70490ab6f1ed3bd7b220a839fd2e953 384 Pfam PF02222 ATP-grasp domain 145 313 7.4E-54 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AMF_788 e70490ab6f1ed3bd7b220a839fd2e953 384 SUPERFAMILY SSF51246 337 382 1.18E-10 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMF_788 e70490ab6f1ed3bd7b220a839fd2e953 384 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 39 384 37.355 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMF_788 e70490ab6f1ed3bd7b220a839fd2e953 384 Gene3D G3DSA:3.30.470.20 139 382 2.1E-87 T 13-10-2018 AMF_788 e70490ab6f1ed3bd7b220a839fd2e953 384 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 40 383 8.7E-108 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMF_788 e70490ab6f1ed3bd7b220a839fd2e953 384 Gene3D G3DSA:3.40.50.20 32 138 9.0E-31 T 13-10-2018 AMF_788 e70490ab6f1ed3bd7b220a839fd2e953 384 SUPERFAMILY SSF56059 135 333 1.11E-62 T 13-10-2018 AMF_788 e70490ab6f1ed3bd7b220a839fd2e953 384 Gene3D G3DSA:3.30.1490.20 150 213 2.1E-87 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMF_788 e70490ab6f1ed3bd7b220a839fd2e953 384 SUPERFAMILY SSF52440 34 132 2.59E-19 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMF_805 066668738856464d50064b79fdc9f211 487 Gene3D G3DSA:2.30.42.10 390 483 3.6E-11 T 13-10-2018 AMF_805 066668738856464d50064b79fdc9f211 487 Pfam PF13365 Trypsin-like peptidase domain 106 240 3.1E-36 T 13-10-2018 AMF_805 066668738856464d50064b79fdc9f211 487 SMART SM00228 280 362 6.6E-16 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AMF_805 066668738856464d50064b79fdc9f211 487 SMART SM00228 390 471 5.4E-4 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AMF_805 066668738856464d50064b79fdc9f211 487 Pfam PF13180 PDZ domain 280 370 1.4E-17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AMF_805 066668738856464d50064b79fdc9f211 487 Pfam PF13180 PDZ domain 406 457 3.0E-6 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AMF_805 066668738856464d50064b79fdc9f211 487 Gene3D G3DSA:2.30.42.10 275 378 1.6E-29 T 13-10-2018 AMF_805 066668738856464d50064b79fdc9f211 487 SUPERFAMILY SSF50156 407 469 1.17E-7 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AMF_805 066668738856464d50064b79fdc9f211 487 SUPERFAMILY SSF50494 6 289 1.96E-62 T 13-10-2018 IPR009003 Peptidase S1, PA clan AMF_805 066668738856464d50064b79fdc9f211 487 SUPERFAMILY SSF50156 251 375 7.62E-26 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AMF_805 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 136 156 4.4E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_805 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 233 250 4.4E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_805 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 115 127 4.4E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_805 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 177 201 4.4E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_805 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 320 332 4.4E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_805 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 211 228 4.4E-50 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_805 066668738856464d50064b79fdc9f211 487 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 471 5.7E-139 T 13-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMF_805 066668738856464d50064b79fdc9f211 487 Gene3D G3DSA:2.40.10.120 39 273 3.1E-77 T 13-10-2018 AMF_481 0d0263b152d6b74c6f4c80ffed2cf39f 201 Gene3D G3DSA:3.40.50.1950 15 201 4.2E-73 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMF_481 0d0263b152d6b74c6f4c80ffed2cf39f 201 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 16 198 2.3E-66 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like AMF_481 0d0263b152d6b74c6f4c80ffed2cf39f 201 SUPERFAMILY SSF52507 15 197 1.24E-58 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMF_481 0d0263b152d6b74c6f4c80ffed2cf39f 201 Pfam PF02441 Flavoprotein 15 180 1.0E-26 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AMF_481 0d0263b152d6b74c6f4c80ffed2cf39f 201 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 15 200 35.021 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like AMF_409 bdf5ffa7d5ca3c653c7f1f17edbcccd3 303 Pfam PF00586 AIR synthase related protein, N-terminal domain 10 121 7.9E-21 T 13-10-2018 IPR016188 PurM-like, N-terminal domain AMF_409 bdf5ffa7d5ca3c653c7f1f17edbcccd3 303 Gene3D G3DSA:3.90.650.10 128 302 1.6E-45 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMF_409 bdf5ffa7d5ca3c653c7f1f17edbcccd3 303 SUPERFAMILY SSF56042 127 288 2.09E-33 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMF_409 bdf5ffa7d5ca3c653c7f1f17edbcccd3 303 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 9 301 1.5E-83 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMF_409 bdf5ffa7d5ca3c653c7f1f17edbcccd3 303 Pfam PF02769 AIR synthase related protein, C-terminal domain 133 285 3.6E-9 T 13-10-2018 IPR010918 PurM-like, C-terminal domain AMF_409 bdf5ffa7d5ca3c653c7f1f17edbcccd3 303 PIRSF PIRSF005303 4 302 1.4E-89 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMF_409 bdf5ffa7d5ca3c653c7f1f17edbcccd3 303 SUPERFAMILY SSF55326 9 121 5.76E-28 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMF_409 bdf5ffa7d5ca3c653c7f1f17edbcccd3 303 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 302 24.072 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AMF_409 bdf5ffa7d5ca3c653c7f1f17edbcccd3 303 Gene3D G3DSA:3.30.1330.10 2 122 2.6E-30 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMF_807 008c42739b674137476819e5fb433913 232 SUPERFAMILY SSF69065 6 164 1.01E-45 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AMF_807 008c42739b674137476819e5fb433913 232 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 15 228 2.5E-68 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AMF_807 008c42739b674137476819e5fb433913 232 Gene3D G3DSA:3.30.160.20 165 230 3.7E-22 T 13-10-2018 AMF_807 008c42739b674137476819e5fb433913 232 Hamap MF_00104 Ribonuclease 3 [rnc]. 13 225 28.427 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AMF_807 008c42739b674137476819e5fb433913 232 Pfam PF14622 Ribonuclease-III-like 25 149 6.4E-30 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMF_807 008c42739b674137476819e5fb433913 232 SMART SM00535 25 156 1.4E-39 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMF_807 008c42739b674137476819e5fb433913 232 SMART SM00358 162 229 6.3E-20 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain AMF_807 008c42739b674137476819e5fb433913 232 SUPERFAMILY SSF54768 118 229 1.57E-26 T 13-10-2018 AMF_807 008c42739b674137476819e5fb433913 232 ProSitePatterns PS00517 Ribonuclease III family signature. 45 53 - T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMF_807 008c42739b674137476819e5fb433913 232 Gene3D G3DSA:1.10.1520.10 1 164 3.1E-41 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AMF_807 008c42739b674137476819e5fb433913 232 Pfam PF00035 Double-stranded RNA binding motif 162 227 1.0E-14 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain AMF_256 fe02620d080c68507c23c27786e29477 172 Gene3D G3DSA:1.20.1550.10 4 158 1.8E-12 T 13-10-2018 IPR023380 DsbB-like superfamily AMF_256 fe02620d080c68507c23c27786e29477 172 SUPERFAMILY SSF158442 11 150 5.62E-26 T 13-10-2018 IPR023380 DsbB-like superfamily AMF_256 fe02620d080c68507c23c27786e29477 172 PIRSF PIRSF033913 2 157 6.9E-25 T 13-10-2018 IPR024199 Uncharacterised conserved protein, DsbB-like AMF_256 fe02620d080c68507c23c27786e29477 172 Pfam PF02600 Disulfide bond formation protein DsbB 8 150 1.4E-24 T 13-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 AMF_642 ab1851da3f3330ecc92788e53c20942b 328 Pfam PF01926 50S ribosome-binding GTPase 141 260 1.5E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_642 ab1851da3f3330ecc92788e53c20942b 328 Gene3D G3DSA:2.70.210.12 1 138 2.0E-45 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily AMF_642 ab1851da3f3330ecc92788e53c20942b 328 SUPERFAMILY SSF52540 141 288 2.74E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_642 ab1851da3f3330ecc92788e53c20942b 328 ProSitePatterns PS00905 GTP1/OBG family signature. 192 205 - T 13-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 AMF_642 ab1851da3f3330ecc92788e53c20942b 328 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 1 296 3.3E-117 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_642 ab1851da3f3330ecc92788e53c20942b 328 PIRSF PIRSF002401 1 317 1.2E-112 T 13-10-2018 IPR035101 GTP-binding protein, Obg-type AMF_642 ab1851da3f3330ecc92788e53c20942b 328 Gene3D G3DSA:3.40.50.300 140 316 1.2E-44 T 13-10-2018 AMF_642 ab1851da3f3330ecc92788e53c20942b 328 SUPERFAMILY SSF82051 1 138 6.41E-44 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily AMF_642 ab1851da3f3330ecc92788e53c20942b 328 Hamap MF_01454 GTPase Obg [obg]. 1 305 37.556 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_642 ab1851da3f3330ecc92788e53c20942b 328 Pfam PF01018 GTP1/OBG 1 137 1.4E-46 T 13-10-2018 IPR006169 GTP1/OBG domain AMF_642 ab1851da3f3330ecc92788e53c20942b 328 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 163 181 5.8E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_642 ab1851da3f3330ecc92788e53c20942b 328 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 142 162 5.8E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_642 ab1851da3f3330ecc92788e53c20942b 328 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 190 205 5.8E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_642 ab1851da3f3330ecc92788e53c20942b 328 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 207 225 5.8E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_798 c7e29b8ba69f595b1583cde76936016f 125 Pfam PF04956 TrbC/VIRB2 family 14 110 2.2E-17 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_656 12010fb3aed31696847806e3f53188a1 314 Gene3D G3DSA:3.30.360.10 179 282 1.3E-78 T 13-10-2018 AMF_656 12010fb3aed31696847806e3f53188a1 314 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 180 312 5.2E-38 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMF_656 12010fb3aed31696847806e3f53188a1 314 SUPERFAMILY SSF51735 58 312 1.38E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_656 12010fb3aed31696847806e3f53188a1 314 PIRSF PIRSF000161 56 314 9.6E-74 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMF_656 12010fb3aed31696847806e3f53188a1 314 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 201 218 - T 13-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMF_656 12010fb3aed31696847806e3f53188a1 314 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 58 312 6.7E-65 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMF_656 12010fb3aed31696847806e3f53188a1 314 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 58 313 28.25 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMF_656 12010fb3aed31696847806e3f53188a1 314 Gene3D G3DSA:3.40.50.720 61 312 1.3E-78 T 13-10-2018 AMF_656 12010fb3aed31696847806e3f53188a1 314 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 58 177 4.1E-26 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMF_656 12010fb3aed31696847806e3f53188a1 314 SUPERFAMILY SSF55347 179 284 1.37E-27 T 13-10-2018 AMF_575 fe529ae9af89ece32c458e244dfe8017 530 Gene3D G3DSA:2.40.160.10 114 471 1.9E-9 T 13-10-2018 IPR023614 Porin domain superfamily AMF_575 fe529ae9af89ece32c458e244dfe8017 530 Pfam PF13609 Gram-negative porin 104 420 4.7E-9 T 13-10-2018 AMF_575 fe529ae9af89ece32c458e244dfe8017 530 SUPERFAMILY SSF56935 141 447 6.8E-9 T 13-10-2018 AMF_679 b2699c485e7f6c7ada7130a6e3ba421b 174 Pfam PF00333 Ribosomal protein S5, N-terminal domain 17 79 9.9E-25 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMF_679 b2699c485e7f6c7ada7130a6e3ba421b 174 Pfam PF03719 Ribosomal protein S5, C-terminal domain 93 163 1.5E-24 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_679 b2699c485e7f6c7ada7130a6e3ba421b 174 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 173 30.902 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMF_679 b2699c485e7f6c7ada7130a6e3ba421b 174 SUPERFAMILY SSF54211 85 163 3.54E-22 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_679 b2699c485e7f6c7ada7130a6e3ba421b 174 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 15 168 1.9E-57 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMF_679 b2699c485e7f6c7ada7130a6e3ba421b 174 SUPERFAMILY SSF54768 14 81 1.99E-20 T 13-10-2018 AMF_679 b2699c485e7f6c7ada7130a6e3ba421b 174 Gene3D G3DSA:3.30.230.10 80 173 3.0E-31 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_679 b2699c485e7f6c7ada7130a6e3ba421b 174 Gene3D G3DSA:3.30.160.20 7 78 4.3E-27 T 13-10-2018 AMF_080 f8732c838b3352dbb6ec3f09368379b6 219 SUPERFAMILY SSF54427 62 217 6.13E-40 T 13-10-2018 IPR032710 NTF2-like domain superfamily AMF_080 f8732c838b3352dbb6ec3f09368379b6 219 Pfam PF04280 Tim44-like domain 74 218 2.1E-38 T 13-10-2018 IPR007379 Tim44-like domain AMF_080 f8732c838b3352dbb6ec3f09368379b6 219 PIRSF PIRSF031890 1 219 5.4E-74 T 13-10-2018 IPR016985 Uncharacterised conserved protein UCP031890, Tim44-related AMF_080 f8732c838b3352dbb6ec3f09368379b6 219 ProDom PD111165 RP434 55 216 8.0E-4 T 13-10-2018 AMF_080 f8732c838b3352dbb6ec3f09368379b6 219 SMART SM00978 73 219 5.0E-45 T 13-10-2018 IPR007379 Tim44-like domain AMF_080 f8732c838b3352dbb6ec3f09368379b6 219 Gene3D G3DSA:3.10.450.240 52 219 7.1E-30 T 13-10-2018 AMF_113 7a19430fd3c1527e8621b8cfbfa3865f 110 Pfam PF00462 Glutaredoxin 19 83 1.7E-18 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMF_113 7a19430fd3c1527e8621b8cfbfa3865f 110 SUPERFAMILY SSF52833 6 107 1.43E-34 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_113 7a19430fd3c1527e8621b8cfbfa3865f 110 Gene3D G3DSA:3.40.30.10 9 104 2.4E-33 T 13-10-2018 AMF_113 7a19430fd3c1527e8621b8cfbfa3865f 110 PIRSF PIRSF005894 1 109 6.1E-49 T 13-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 AMF_113 7a19430fd3c1527e8621b8cfbfa3865f 110 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 7 103 2.1E-45 T 13-10-2018 IPR004480 Monothiol glutaredoxin-related AMF_597 b3f2f40ed579690b02b7274b366ad9fd 342 Gene3D G3DSA:3.40.50.11270 47 133 3.1E-107 T 13-10-2018 AMF_597 b3f2f40ed579690b02b7274b366ad9fd 342 Gene3D G3DSA:3.40.1010.20 134 230 3.1E-107 T 13-10-2018 AMF_597 b3f2f40ed579690b02b7274b366ad9fd 342 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 37 316 1.3E-95 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMF_597 b3f2f40ed579690b02b7274b366ad9fd 342 Gene3D G3DSA:3.40.1010.20 42 316 3.1E-107 T 13-10-2018 AMF_597 b3f2f40ed579690b02b7274b366ad9fd 342 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 36 320 36.557 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMF_597 b3f2f40ed579690b02b7274b366ad9fd 342 Pfam PF02401 LytB protein 38 316 8.6E-90 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMF_657 017eca35f5440e51d578c23abe093448 161 SMART SM00903 15 158 5.2E-55 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMF_657 017eca35f5440e51d578c23abe093448 161 SUPERFAMILY SSF50475 6 159 2.11E-46 T 13-10-2018 AMF_657 017eca35f5440e51d578c23abe093448 161 Pfam PF01613 Flavin reductase like domain 15 159 4.6E-35 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMF_657 017eca35f5440e51d578c23abe093448 161 Gene3D G3DSA:2.30.110.10 3 161 2.6E-47 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 Gene3D G3DSA:3.40.190.10 6 210 5.1E-77 T 13-10-2018 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 294 4.7E-109 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 SUPERFAMILY SSF53850 6 218 2.17E-76 T 13-10-2018 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 1.7E-37 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 1.7E-37 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 1.7E-37 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 1.7E-37 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 1.7E-37 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 34.63 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 13-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 295 9.0E-11 T 13-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 SUPERFAMILY SSF54782 220 297 2.09E-16 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 Gene3D G3DSA:3.30.160.40 221 300 8.5E-13 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 PIRSF PIRSF001438 1 301 1.2E-105 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 212 2.3E-70 T 13-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_523 aab8f1ea83ee6bed261a732c48d51bef 303 Gene3D G3DSA:3.40.190.10 103 202 5.1E-77 T 13-10-2018 AMF_894 14eee613e8fd8c53d5446555fc558c65 380 SUPERFAMILY SSF48019 247 361 2.21E-8 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMF_894 14eee613e8fd8c53d5446555fc558c65 380 Gene3D G3DSA:3.40.50.300 45 162 1.4E-5 T 13-10-2018 AMF_894 14eee613e8fd8c53d5446555fc558c65 380 SUPERFAMILY SSF52540 34 234 2.02E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_894 14eee613e8fd8c53d5446555fc558c65 380 Gene3D G3DSA:1.20.272.10 243 366 3.9E-10 T 13-10-2018 AMF_558 6057735f4bf0672b11a0de0ee7b234f6 305 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 4 294 22.079 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMF_558 6057735f4bf0672b11a0de0ee7b234f6 305 SUPERFAMILY SSF52540 5 149 2.22E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_558 6057735f4bf0672b11a0de0ee7b234f6 305 Pfam PF01715 IPP transferase 37 278 1.6E-48 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMF_558 6057735f4bf0672b11a0de0ee7b234f6 305 Gene3D G3DSA:1.10.20.140 110 180 3.3E-67 T 13-10-2018 AMF_558 6057735f4bf0672b11a0de0ee7b234f6 305 SUPERFAMILY SSF52540 4 221 4.82E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_558 6057735f4bf0672b11a0de0ee7b234f6 305 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 6 279 4.4E-54 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMF_558 6057735f4bf0672b11a0de0ee7b234f6 305 Gene3D G3DSA:3.40.50.300 8 278 3.3E-67 T 13-10-2018 AMF_444 819f4ebb289107908ee2b43668716c48 119 Pfam PF04977 Septum formation initiator 40 117 4.6E-7 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 PRINTS PR01166 Cytochrome c oxidase subunit II signature 116 136 1.7E-44 T 13-10-2018 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 PRINTS PR01166 Cytochrome c oxidase subunit II signature 180 201 1.7E-44 T 13-10-2018 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 PRINTS PR01166 Cytochrome c oxidase subunit II signature 224 241 1.7E-44 T 13-10-2018 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 PRINTS PR01166 Cytochrome c oxidase subunit II signature 104 116 1.7E-44 T 13-10-2018 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 PRINTS PR01166 Cytochrome c oxidase subunit II signature 138 157 1.7E-44 T 13-10-2018 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 PRINTS PR01166 Cytochrome c oxidase subunit II signature 242 259 1.7E-44 T 13-10-2018 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 PRINTS PR01166 Cytochrome c oxidase subunit II signature 204 224 1.7E-44 T 13-10-2018 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 41 126 1.1E-15 T 13-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 SUPERFAMILY SSF81464 35 131 6.05E-24 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 142 260 3.5E-54 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 Gene3D G3DSA:1.10.287.90 40 138 3.0E-25 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 51 269 5.4E-64 T 13-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 SUPERFAMILY SSF49503 138 274 5.96E-57 T 13-10-2018 IPR008972 Cupredoxin AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 Gene3D G3DSA:2.60.40.420 139 273 2.9E-56 T 13-10-2018 IPR008972 Cupredoxin AMF_766 2744d749501f8e6f5f9521b1140ae5aa 276 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 205 253 - T 13-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 Pfam PF00164 Ribosomal protein S12/S23 12 122 7.9E-39 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 Gene3D G3DSA:2.40.50.140 1 124 5.3E-59 T 13-10-2018 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 PIRSF PIRSF002133 1 124 8.4E-53 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 SUPERFAMILY SSF50249 2 122 4.88E-48 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 122 2.0E-61 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 124 37.652 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 95 111 2.1E-54 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 2.1E-54 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 111 123 2.1E-54 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 2.1E-54 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 59 78 2.1E-54 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_182 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 78 95 2.1E-54 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_748 d721843eebcbeccd8f291e2cec2898a6 122 Pfam PF02410 Ribosomal silencing factor during starvation 16 109 5.7E-26 T 13-10-2018 AMF_748 d721843eebcbeccd8f291e2cec2898a6 122 Gene3D G3DSA:3.30.460.10 10 120 6.2E-33 T 13-10-2018 AMF_748 d721843eebcbeccd8f291e2cec2898a6 122 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 10 110 21.158 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMF_748 d721843eebcbeccd8f291e2cec2898a6 122 SUPERFAMILY SSF81301 10 115 2.45E-31 T 13-10-2018 AMF_748 d721843eebcbeccd8f291e2cec2898a6 122 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 14 109 6.1E-31 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMF_959 96c7d424fc777f1d1334df19efdf23e6 134 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 18 116 4.0E-36 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_959 96c7d424fc777f1d1334df19efdf23e6 134 Pfam PF01245 Ribosomal protein L19 5 116 1.8E-36 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_959 96c7d424fc777f1d1334df19efdf23e6 134 SUPERFAMILY SSF50104 5 119 2.91E-36 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMF_959 96c7d424fc777f1d1334df19efdf23e6 134 Gene3D G3DSA:2.30.30.790 4 116 1.5E-12 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_959 96c7d424fc777f1d1334df19efdf23e6 134 PRINTS PR00061 Ribosomal protein L19 signature 8 37 3.9E-27 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_959 96c7d424fc777f1d1334df19efdf23e6 134 PRINTS PR00061 Ribosomal protein L19 signature 92 117 3.9E-27 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_959 96c7d424fc777f1d1334df19efdf23e6 134 PRINTS PR00061 Ribosomal protein L19 signature 38 67 3.9E-27 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_959 96c7d424fc777f1d1334df19efdf23e6 134 PIRSF PIRSF002191 1 134 4.1E-41 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_283 4a143035882d1d1684348f9f494d0af2 222 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 74 1.3E-22 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMF_283 4a143035882d1d1684348f9f494d0af2 222 Gene3D G3DSA:1.20.1050.10 79 197 2.1E-82 T 13-10-2018 AMF_283 4a143035882d1d1684348f9f494d0af2 222 SUPERFAMILY SSF47616 70 217 1.99E-24 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMF_283 4a143035882d1d1684348f9f494d0af2 222 SUPERFAMILY SSF52833 3 103 1.03E-27 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_283 4a143035882d1d1684348f9f494d0af2 222 Pfam PF14497 Glutathione S-transferase, C-terminal domain 135 201 1.3E-5 T 13-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMF_283 4a143035882d1d1684348f9f494d0af2 222 Gene3D G3DSA:3.40.30.10 5 222 2.1E-82 T 13-10-2018 AMF_536 6be6b89f54739ef620bdb41806342bb7 132 Pfam PF04956 TrbC/VIRB2 family 10 102 1.5E-15 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_1002 e4ee986569e45a9f0d69e20f8ad0c2f3 277 SUPERFAMILY SSF54506 154 270 9.42E-38 T 13-10-2018 AMF_1002 e4ee986569e45a9f0d69e20f8ad0c2f3 277 Gene3D G3DSA:3.10.310.10 15 273 2.8E-72 T 13-10-2018 AMF_1002 e4ee986569e45a9f0d69e20f8ad0c2f3 277 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 13 277 26.555 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMF_1002 e4ee986569e45a9f0d69e20f8ad0c2f3 277 Pfam PF01678 Diaminopimelate epimerase 15 129 2.1E-14 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMF_1002 e4ee986569e45a9f0d69e20f8ad0c2f3 277 Pfam PF01678 Diaminopimelate epimerase 159 264 4.2E-23 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMF_1002 e4ee986569e45a9f0d69e20f8ad0c2f3 277 SUPERFAMILY SSF54506 13 137 4.04E-29 T 13-10-2018 AMF_1002 e4ee986569e45a9f0d69e20f8ad0c2f3 277 Gene3D G3DSA:3.10.310.10 126 272 2.8E-72 T 13-10-2018 AMF_1002 e4ee986569e45a9f0d69e20f8ad0c2f3 277 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 14 271 5.5E-65 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMF_954 c16b3335f5539ef6d372b60a12d72dcf 271 Gene3D G3DSA:3.40.50.300 2 263 3.7E-74 T 13-10-2018 AMF_954 c16b3335f5539ef6d372b60a12d72dcf 271 SUPERFAMILY SSF52540 3 255 3.51E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_954 c16b3335f5539ef6d372b60a12d72dcf 271 Pfam PF13614 AAA domain 5 179 1.1E-58 T 13-10-2018 IPR025669 AAA domain AMF_331 690eaee4d10252e1b6ff2f63d6bd57c9 261 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 245 7.6E-46 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMF_331 690eaee4d10252e1b6ff2f63d6bd57c9 261 SUPERFAMILY SSF64167 1 259 9.02E-61 T 13-10-2018 AMF_331 690eaee4d10252e1b6ff2f63d6bd57c9 261 Gene3D G3DSA:3.40.1210.10 1 259 7.9E-63 T 13-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMF_331 690eaee4d10252e1b6ff2f63d6bd57c9 261 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 261 24.767 T 13-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMF_331 690eaee4d10252e1b6ff2f63d6bd57c9 261 Pfam PF01975 Survival protein SurE 3 183 6.6E-45 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMF_1036 e9a81504702a24e39e2f9cccb188ad17 56 Gene3D G3DSA:2.20.28.120 1 56 4.3E-23 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1036 e9a81504702a24e39e2f9cccb188ad17 56 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 54 12.541 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1036 e9a81504702a24e39e2f9cccb188ad17 56 Pfam PF00471 Ribosomal protein L33 10 54 1.5E-12 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1036 e9a81504702a24e39e2f9cccb188ad17 56 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 2 55 2.2E-20 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1036 e9a81504702a24e39e2f9cccb188ad17 56 SUPERFAMILY SSF57829 4 54 4.27E-15 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMF_322 171044381ad18d89b043cb73f9f4b294 600 Pfam PF01964 Radical SAM ThiC family 157 595 2.5E-196 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMF_322 171044381ad18d89b043cb73f9f4b294 600 Gene3D G3DSA:3.20.20.540 218 531 1.7E-151 T 13-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMF_322 171044381ad18d89b043cb73f9f4b294 600 Pfam PF13667 ThiC-associated domain 54 122 1.5E-19 T 13-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMF_322 171044381ad18d89b043cb73f9f4b294 600 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 156 600 95.412 T 13-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMF_322 171044381ad18d89b043cb73f9f4b294 600 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 156 598 1.3E-206 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMF_818 eb0978c3603b27441afd7cf7c2e4ff36 80 PRINTS PR00160 Glutaredoxin signature 46 59 7.1E-18 T 13-10-2018 IPR014025 Glutaredoxin subgroup AMF_818 eb0978c3603b27441afd7cf7c2e4ff36 80 PRINTS PR00160 Glutaredoxin signature 60 73 7.1E-18 T 13-10-2018 IPR014025 Glutaredoxin subgroup AMF_818 eb0978c3603b27441afd7cf7c2e4ff36 80 PRINTS PR00160 Glutaredoxin signature 4 22 7.1E-18 T 13-10-2018 IPR014025 Glutaredoxin subgroup AMF_818 eb0978c3603b27441afd7cf7c2e4ff36 80 SUPERFAMILY SSF52833 2 79 6.6E-30 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_818 eb0978c3603b27441afd7cf7c2e4ff36 80 ProSitePatterns PS00195 Glutaredoxin active site. 6 21 - T 13-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 AMF_818 eb0978c3603b27441afd7cf7c2e4ff36 80 Pfam PF00462 Glutaredoxin 4 63 5.6E-23 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMF_818 eb0978c3603b27441afd7cf7c2e4ff36 80 Gene3D G3DSA:3.40.30.10 1 80 1.6E-30 T 13-10-2018 AMF_818 eb0978c3603b27441afd7cf7c2e4ff36 80 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 79 3.6E-32 T 13-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 AMF_976 1380b7057b43327e1edb142230680210 283 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 1 282 46.967 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_976 1380b7057b43327e1edb142230680210 283 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 3 278 3.5E-122 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_976 1380b7057b43327e1edb142230680210 283 SUPERFAMILY SSF55681 1 279 9.28E-112 T 13-10-2018 AMF_976 1380b7057b43327e1edb142230680210 283 Gene3D G3DSA:1.20.58.180 206 282 2.6E-25 T 13-10-2018 AMF_976 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 133 153 1.9E-48 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_976 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 76 96 1.9E-48 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_976 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 242 258 1.9E-48 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_976 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 107 131 1.9E-48 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_976 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 55 70 1.9E-48 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_976 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 156 171 1.9E-48 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_976 1380b7057b43327e1edb142230680210 283 Gene3D G3DSA:3.30.930.10 1 205 2.1E-90 T 13-10-2018 AMF_1041 5ec2dd990c0472f2eb4a28f6bf95bb97 91 SUPERFAMILY SSF47729 1 90 6.48E-19 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMF_1041 5ec2dd990c0472f2eb4a28f6bf95bb97 91 SMART SM00411 1 90 3.7E-5 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMF_1041 5ec2dd990c0472f2eb4a28f6bf95bb97 91 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.3E-19 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMF_1041 5ec2dd990c0472f2eb4a28f6bf95bb97 91 Gene3D G3DSA:4.10.520.10 1 91 5.9E-16 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMF_948 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 Gene3D G3DSA:3.40.1670.10 342 459 2.0E-46 T 13-10-2018 AMF_948 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 11 434 2.4E-152 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AMF_948 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 8 460 6.9E-141 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AMF_948 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 SUPERFAMILY SSF50475 4 327 1.29E-106 T 13-10-2018 AMF_948 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 SUPERFAMILY SSF143968 328 492 1.7E-62 T 13-10-2018 AMF_564 68f67897db5b415d7cba918884cf783f 292 Gene3D G3DSA:3.40.1500.10 8 292 6.2E-106 T 13-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMF_564 68f67897db5b415d7cba918884cf783f 292 PIRSF PIRSF000166 4 292 5.6E-114 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMF_564 68f67897db5b415d7cba918884cf783f 292 Pfam PF01218 Coproporphyrinogen III oxidase 26 292 1.5E-96 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMF_564 68f67897db5b415d7cba918884cf783f 292 PRINTS PR00073 Coprogen oxidase signature 177 206 3.6E-45 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMF_564 68f67897db5b415d7cba918884cf783f 292 PRINTS PR00073 Coprogen oxidase signature 52 68 3.6E-45 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMF_564 68f67897db5b415d7cba918884cf783f 292 PRINTS PR00073 Coprogen oxidase signature 140 162 3.6E-45 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMF_564 68f67897db5b415d7cba918884cf783f 292 PRINTS PR00073 Coprogen oxidase signature 249 276 3.6E-45 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMF_564 68f67897db5b415d7cba918884cf783f 292 PRINTS PR00073 Coprogen oxidase signature 277 292 3.6E-45 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMF_564 68f67897db5b415d7cba918884cf783f 292 SUPERFAMILY SSF102886 17 292 7.59E-112 T 13-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMF_369 fc520ca1872809514a496c4411b919a5 827 SUPERFAMILY SSF47384 429 500 9.22E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMF_369 fc520ca1872809514a496c4411b919a5 827 Gene3D G3DSA:3.40.50.2300 699 827 4.9E-26 T 13-10-2018 AMF_369 fc520ca1872809514a496c4411b919a5 827 SMART SM00387 544 673 1.4E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMF_369 fc520ca1872809514a496c4411b919a5 827 Pfam PF00512 His Kinase A (phospho-acceptor) domain 439 501 3.1E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_369 fc520ca1872809514a496c4411b919a5 827 Gene3D G3DSA:1.10.287.130 429 502 5.3E-21 T 13-10-2018 AMF_369 fc520ca1872809514a496c4411b919a5 827 Pfam PF00072 Response regulator receiver domain 709 819 8.2E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMF_369 fc520ca1872809514a496c4411b919a5 827 SUPERFAMILY SSF55874 493 673 9.82E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_369 fc520ca1872809514a496c4411b919a5 827 Gene3D G3DSA:3.30.565.10 505 676 9.1E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_369 fc520ca1872809514a496c4411b919a5 827 SMART SM00388 437 503 1.2E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_369 fc520ca1872809514a496c4411b919a5 827 SMART SM00448 707 819 1.6E-16 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMF_369 fc520ca1872809514a496c4411b919a5 827 SUPERFAMILY SSF52172 705 824 9.96E-26 T 13-10-2018 IPR011006 CheY-like superfamily AMF_369 fc520ca1872809514a496c4411b919a5 827 Pfam PF13426 PAS domain 230 307 0.035 T 13-10-2018 IPR000014 PAS domain AMF_369 fc520ca1872809514a496c4411b919a5 827 Pfam PF13426 PAS domain 332 382 0.16 T 13-10-2018 IPR000014 PAS domain AMF_369 fc520ca1872809514a496c4411b919a5 827 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 548 670 2.1E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMF_369 fc520ca1872809514a496c4411b919a5 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 657 670 8.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMF_369 fc520ca1872809514a496c4411b919a5 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 620 630 8.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMF_369 fc520ca1872809514a496c4411b919a5 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 633 651 8.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMF_369 fc520ca1872809514a496c4411b919a5 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 602 616 8.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMF_366 3b1a0cddeba458b5627cb5eec92bbcc1 289 Gene3D G3DSA:3.30.70.890 167 288 1.3E-19 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AMF_366 3b1a0cddeba458b5627cb5eec92bbcc1 289 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 7 265 6.7E-51 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMF_366 3b1a0cddeba458b5627cb5eec92bbcc1 289 SUPERFAMILY SSF54211 8 160 8.35E-31 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_366 3b1a0cddeba458b5627cb5eec92bbcc1 289 Gene3D G3DSA:3.30.230.10 2 162 2.8E-43 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_366 3b1a0cddeba458b5627cb5eec92bbcc1 289 SUPERFAMILY SSF55060 167 285 9.21E-24 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AMF_366 3b1a0cddeba458b5627cb5eec92bbcc1 289 PIRSF PIRSF010376 6 289 1.8E-68 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMF_366 3b1a0cddeba458b5627cb5eec92bbcc1 289 Pfam PF08544 GHMP kinases C terminal 219 273 4.7E-10 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain AMF_366 3b1a0cddeba458b5627cb5eec92bbcc1 289 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 8 288 27.638 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMF_366 3b1a0cddeba458b5627cb5eec92bbcc1 289 Pfam PF00288 GHMP kinases N terminal domain 93 145 1.2E-5 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMF_882 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 266 286 2.1E-64 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_882 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 124 141 2.1E-64 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_882 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 202 228 2.1E-64 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_882 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 302 321 2.1E-64 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_882 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 151 173 2.1E-64 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_882 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 236 256 2.1E-64 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_882 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 74 100 2.1E-64 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_882 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 286 302 2.1E-64 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_882 ec92c37fcec9a65fdc3cfe0fad95931c 640 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 307 621 8.3E-66 T 13-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal AMF_882 ec92c37fcec9a65fdc3cfe0fad95931c 640 Pfam PF01578 Cytochrome C assembly protein 83 287 1.1E-35 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMF_490 34b68728494d3e82aa695ba852f812ac 520 Gene3D G3DSA:1.10.10.10 1 148 3.8E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMF_490 34b68728494d3e82aa695ba852f812ac 520 SUPERFAMILY SSF53383 150 509 5.19E-74 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMF_490 34b68728494d3e82aa695ba852f812ac 520 Gene3D G3DSA:3.90.1150.10 151 504 3.0E-101 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMF_490 34b68728494d3e82aa695ba852f812ac 520 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 137 6.0E-26 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type AMF_490 34b68728494d3e82aa695ba852f812ac 520 Gene3D G3DSA:1.10.260.50 162 417 3.0E-101 T 13-10-2018 AMF_490 34b68728494d3e82aa695ba852f812ac 520 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 53 71 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMF_490 34b68728494d3e82aa695ba852f812ac 520 Pfam PF00266 Aminotransferase class-V 151 501 4.9E-48 T 13-10-2018 IPR000192 Aminotransferase class V domain AMF_490 34b68728494d3e82aa695ba852f812ac 520 SUPERFAMILY SSF46785 3 139 2.58E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMF_490 34b68728494d3e82aa695ba852f812ac 520 Pfam PF02082 Transcriptional regulator 1 81 1.7E-16 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type AMF_490 34b68728494d3e82aa695ba852f812ac 520 Gene3D G3DSA:3.40.640.10 209 374 3.0E-101 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMF_982 6aba674645604a20de741d229ceac323 272 Gene3D G3DSA:1.10.287.70 1 68 8.9E-20 T 13-10-2018 AMF_982 6aba674645604a20de741d229ceac323 272 Gene3D G3DSA:1.20.120.80 71 271 8.4E-66 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_982 6aba674645604a20de741d229ceac323 272 SUPERFAMILY SSF81452 2 270 1.57E-79 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_982 6aba674645604a20de741d229ceac323 272 Pfam PF00510 Cytochrome c oxidase subunit III 4 271 1.6E-76 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_170 43fc1f948cbdd3ca539b1927487cfea8 338 Pfam PF12849 PBP superfamily domain 18 301 1.3E-31 T 13-10-2018 IPR024370 PBP domain AMF_170 43fc1f948cbdd3ca539b1927487cfea8 338 SUPERFAMILY SSF53850 21 333 2.64E-56 T 13-10-2018 AMF_170 43fc1f948cbdd3ca539b1927487cfea8 338 Gene3D G3DSA:3.40.190.10 23 304 1.9E-44 T 13-10-2018 AMF_170 43fc1f948cbdd3ca539b1927487cfea8 338 Gene3D G3DSA:3.40.190.10 107 277 1.9E-44 T 13-10-2018 AMF_903 c730ebe3b8252d385a28af0ba503c6c5 319 SUPERFAMILY SSF82866 137 300 3.27E-33 T 13-10-2018 AMF_903 c730ebe3b8252d385a28af0ba503c6c5 319 PRINTS PR01755 Bacterial translocase SecF protein signature 212 230 5.7E-23 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_903 c730ebe3b8252d385a28af0ba503c6c5 319 PRINTS PR01755 Bacterial translocase SecF protein signature 246 261 5.7E-23 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_903 c730ebe3b8252d385a28af0ba503c6c5 319 PRINTS PR01755 Bacterial translocase SecF protein signature 164 178 5.7E-23 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_903 c730ebe3b8252d385a28af0ba503c6c5 319 PRINTS PR01755 Bacterial translocase SecF protein signature 49 64 5.7E-23 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_903 c730ebe3b8252d385a28af0ba503c6c5 319 Pfam PF02355 Protein export membrane protein 129 299 2.5E-50 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMF_903 c730ebe3b8252d385a28af0ba503c6c5 319 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 51 298 2.4E-61 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMF_903 c730ebe3b8252d385a28af0ba503c6c5 319 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 22 309 27.862 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMF_903 c730ebe3b8252d385a28af0ba503c6c5 319 Gene3D G3DSA:1.20.1640.10 137 318 2.5E-12 T 13-10-2018 AMF_903 c730ebe3b8252d385a28af0ba503c6c5 319 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 129 295 1.6E-46 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_953 eb8a7fd7739c6987af942dbc29de152e 154 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 44 144 8.8E-28 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMF_953 eb8a7fd7739c6987af942dbc29de152e 154 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 113 123 - T 13-10-2018 IPR020549 Endoribonuclease YbeY, conserved site AMF_953 eb8a7fd7739c6987af942dbc29de152e 154 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 1 147 19.7 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMF_953 eb8a7fd7739c6987af942dbc29de152e 154 Pfam PF02130 Uncharacterized protein family UPF0054 20 142 8.8E-30 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMF_953 eb8a7fd7739c6987af942dbc29de152e 154 Gene3D G3DSA:3.40.390.30 1 152 5.3E-35 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 AMF_953 eb8a7fd7739c6987af942dbc29de152e 154 SUPERFAMILY SSF55486 22 152 1.15E-36 T 13-10-2018 AMF_703 73a78fc2f6059507f1a5a71019691e64 165 Pfam PF13747 Domain of unknown function (DUF4164) 73 161 3.5E-23 T 13-10-2018 IPR025310 Protein of unknown function DUF4164 AMF_104 12776c194d2d53bf2c51764a1fa898a1 277 Gene3D G3DSA:3.20.20.60 3 266 5.7E-97 T 13-10-2018 AMF_104 12776c194d2d53bf2c51764a1fa898a1 277 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 8 260 6.8E-90 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMF_104 12776c194d2d53bf2c51764a1fa898a1 277 SUPERFAMILY SSF51621 5 260 1.57E-95 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMF_104 12776c194d2d53bf2c51764a1fa898a1 277 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 3 260 39.07 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMF_104 12776c194d2d53bf2c51764a1fa898a1 277 Pfam PF02548 Ketopantoate hydroxymethyltransferase 6 255 2.0E-99 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMF_104 12776c194d2d53bf2c51764a1fa898a1 277 PIRSF PIRSF000388 3 262 2.0E-99 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMF_860 be0240439a472678b40d80135fd3841e 187 SUPERFAMILY SSF47413 21 99 3.22E-23 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMF_860 be0240439a472678b40d80135fd3841e 187 Pfam PF01381 Helix-turn-helix 34 87 4.9E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMF_860 be0240439a472678b40d80135fd3841e 187 SMART SM00530 33 88 6.6E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMF_860 be0240439a472678b40d80135fd3841e 187 Gene3D G3DSA:1.10.260.40 24 96 2.5E-17 T 13-10-2018 AMF_711 f55ca5ee70893091219cc7eb794a32f9 867 Pfam PF13361 UvrD-like helicase C-terminal domain 437 818 9.0E-14 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMF_711 f55ca5ee70893091219cc7eb794a32f9 867 SUPERFAMILY SSF52540 5 823 2.0E-96 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_711 f55ca5ee70893091219cc7eb794a32f9 867 Gene3D G3DSA:3.40.50.300 520 620 1.6E-10 T 13-10-2018 AMF_711 f55ca5ee70893091219cc7eb794a32f9 867 Gene3D G3DSA:3.40.50.300 309 459 2.7E-29 T 13-10-2018 AMF_711 f55ca5ee70893091219cc7eb794a32f9 867 Pfam PF00580 UvrD/REP helicase N-terminal domain 9 425 9.2E-47 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMF_711 f55ca5ee70893091219cc7eb794a32f9 867 Gene3D G3DSA:3.40.50.300 703 852 2.4E-18 T 13-10-2018 AMF_958 06a6e78c41df6e7a55e786ab59a2ff6a 235 PIRSF PIRSF000386 1 234 3.6E-87 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMF_958 06a6e78c41df6e7a55e786ab59a2ff6a 235 Gene3D G3DSA:1.10.1270.20 174 230 4.4E-22 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMF_958 06a6e78c41df6e7a55e786ab59a2ff6a 235 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 24 218 1.1E-50 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMF_958 06a6e78c41df6e7a55e786ab59a2ff6a 235 SUPERFAMILY SSF75217 1 227 1.31E-88 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases AMF_958 06a6e78c41df6e7a55e786ab59a2ff6a 235 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 235 92.318 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMF_958 06a6e78c41df6e7a55e786ab59a2ff6a 235 Gene3D G3DSA:3.40.1280.10 1 173 1.9E-68 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMF_958 06a6e78c41df6e7a55e786ab59a2ff6a 235 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 225 2.3E-77 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMF_639 9976b11b117dbe265fe5eda85efc412c 534 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 188 531 3.1E-28 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMF_639 9976b11b117dbe265fe5eda85efc412c 534 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 183 203 8.4E-14 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMF_639 9976b11b117dbe265fe5eda85efc412c 534 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 281 300 8.4E-14 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMF_639 9976b11b117dbe265fe5eda85efc412c 534 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 415 432 8.4E-14 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMF_639 9976b11b117dbe265fe5eda85efc412c 534 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 438 459 8.4E-14 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMF_639 9976b11b117dbe265fe5eda85efc412c 534 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 369 388 8.4E-14 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMF_639 9976b11b117dbe265fe5eda85efc412c 534 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 483 501 8.4E-14 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMF_639 9976b11b117dbe265fe5eda85efc412c 534 PIRSF PIRSF006615 40 534 1.5E-71 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AMF_639 9976b11b117dbe265fe5eda85efc412c 534 SUPERFAMILY SSF55486 39 532 3.24E-53 T 13-10-2018 AMF_639 9976b11b117dbe265fe5eda85efc412c 534 Gene3D G3DSA:1.10.1370.30 39 533 1.3E-93 T 13-10-2018 AMF_781 3d9cc779cd1722972dfee80c40086f8b 197 Pfam PF10691 Protein of unknown function (DUF2497) 115 194 3.0E-20 T 13-10-2018 IPR019632 Protein of unknown function DUF2497 AMF_640 36d0c4083d4194666fbbef27f51747a2 255 PRINTS PR01021 OMPA domain signature 65 87 1.4E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMF_640 36d0c4083d4194666fbbef27f51747a2 255 PRINTS PR01021 OMPA domain signature 110 126 1.4E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMF_640 36d0c4083d4194666fbbef27f51747a2 255 PRINTS PR01021 OMPA domain signature 95 110 1.4E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMF_640 36d0c4083d4194666fbbef27f51747a2 255 Pfam PF00691 OmpA family 64 146 9.6E-14 T 13-10-2018 IPR006665 OmpA-like domain AMF_640 36d0c4083d4194666fbbef27f51747a2 255 SUPERFAMILY SSF103088 60 172 2.22E-25 T 13-10-2018 IPR036737 OmpA-like domain superfamily AMF_640 36d0c4083d4194666fbbef27f51747a2 255 Gene3D G3DSA:3.30.1330.60 55 172 3.2E-27 T 13-10-2018 IPR036737 OmpA-like domain superfamily AMF_081 8e6fce386bb3a80351b9c0144c40dc9d 175 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 11 157 1.7E-34 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMF_081 8e6fce386bb3a80351b9c0144c40dc9d 175 Gene3D G3DSA:3.10.420.10 7 173 6.5E-50 T 13-10-2018 IPR035958 SecB-like superfamily AMF_081 8e6fce386bb3a80351b9c0144c40dc9d 175 Hamap MF_00821 Protein-export protein SecB [secB]. 8 162 27.39 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMF_081 8e6fce386bb3a80351b9c0144c40dc9d 175 Pfam PF02556 Preprotein translocase subunit SecB 12 158 1.1E-45 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMF_081 8e6fce386bb3a80351b9c0144c40dc9d 175 SUPERFAMILY SSF54611 13 158 3.71E-40 T 13-10-2018 IPR035958 SecB-like superfamily AMF_585 1328ebb047b7f1a49c953bc2b1d09945 117 Gene3D G3DSA:3.40.1230.10 2 117 1.6E-16 T 13-10-2018 IPR036748 MTH938-like superfamily AMF_585 1328ebb047b7f1a49c953bc2b1d09945 117 SUPERFAMILY SSF64076 3 115 6.28E-23 T 13-10-2018 IPR036748 MTH938-like superfamily AMF_585 1328ebb047b7f1a49c953bc2b1d09945 117 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 8 114 4.9E-16 T 13-10-2018 IPR007523 NDUFAF3/Mth938 domain-containing protein AMF_117 3121b2b3235fc7c67acdba2fc9e8bb25 880 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 22 739 1.3E-179 T 13-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ AMF_117 3121b2b3235fc7c67acdba2fc9e8bb25 880 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 130 682 6.2E-64 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMF_117 3121b2b3235fc7c67acdba2fc9e8bb25 880 Pfam PF11874 Domain of unknown function (DUF3394) 694 875 3.3E-34 T 13-10-2018 IPR021814 Protein of unknown function DUF3394 AMF_803 e0ccb28be6dcc1d1c44c544c3c14f8f8 370 TIGRFAM TIGR01933 hflK: HflK protein 80 358 6.6E-81 T 13-10-2018 IPR010201 HflK GO:0016021 AMF_803 e0ccb28be6dcc1d1c44c544c3c14f8f8 370 SUPERFAMILY SSF117892 148 263 1.31E-17 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily AMF_803 e0ccb28be6dcc1d1c44c544c3c14f8f8 370 Gene3D G3DSA:3.30.479.30 144 248 3.8E-17 T 13-10-2018 AMF_803 e0ccb28be6dcc1d1c44c544c3c14f8f8 370 Pfam PF01145 SPFH domain / Band 7 family 82 272 4.3E-24 T 13-10-2018 IPR001107 Band 7 domain AMF_803 e0ccb28be6dcc1d1c44c544c3c14f8f8 370 SMART SM00244 78 257 5.1E-24 T 13-10-2018 IPR001107 Band 7 domain AMF_702 eee41347b4c5dfe402856b484098ff39 293 Pfam PF01343 Peptidase family S49 112 259 6.6E-41 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMF_702 eee41347b4c5dfe402856b484098ff39 293 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 54 255 8.5E-60 T 13-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 AMF_702 eee41347b4c5dfe402856b484098ff39 293 Gene3D G3DSA:3.40.1750.20 149 215 2.7E-60 T 13-10-2018 AMF_702 eee41347b4c5dfe402856b484098ff39 293 Gene3D G3DSA:3.90.226.10 57 253 2.7E-60 T 13-10-2018 AMF_702 eee41347b4c5dfe402856b484098ff39 293 SUPERFAMILY SSF52096 41 245 2.44E-39 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMF_804 c7e3d978c5323564c6a5e60133883439 318 Gene3D G3DSA:3.30.479.30 81 216 1.0E-20 T 13-10-2018 AMF_804 c7e3d978c5323564c6a5e60133883439 318 SMART SM00244 52 214 8.8E-30 T 13-10-2018 IPR001107 Band 7 domain AMF_804 c7e3d978c5323564c6a5e60133883439 318 PIRSF PIRSF005651 28 318 3.6E-84 T 13-10-2018 IPR010200 HflC GO:0016021|GO:0052547 AMF_804 c7e3d978c5323564c6a5e60133883439 318 PRINTS PR00721 Stomatin signature 107 128 3.5E-8 T 13-10-2018 IPR001972 Stomatin family GO:0016020 AMF_804 c7e3d978c5323564c6a5e60133883439 318 PRINTS PR00721 Stomatin signature 209 230 3.5E-8 T 13-10-2018 IPR001972 Stomatin family GO:0016020 AMF_804 c7e3d978c5323564c6a5e60133883439 318 PRINTS PR00721 Stomatin signature 190 208 3.5E-8 T 13-10-2018 IPR001972 Stomatin family GO:0016020 AMF_804 c7e3d978c5323564c6a5e60133883439 318 PRINTS PR00721 Stomatin signature 59 81 3.5E-8 T 13-10-2018 IPR001972 Stomatin family GO:0016020 AMF_804 c7e3d978c5323564c6a5e60133883439 318 Pfam PF01145 SPFH domain / Band 7 family 56 231 4.7E-29 T 13-10-2018 IPR001107 Band 7 domain AMF_804 c7e3d978c5323564c6a5e60133883439 318 SUPERFAMILY SSF117892 84 221 1.23E-24 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily AMF_556 1f967ea09a5e6b29d135efb225cd60b0 387 Gene3D G3DSA:1.10.1040.10 187 308 7.7E-7 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMF_556 1f967ea09a5e6b29d135efb225cd60b0 387 SUPERFAMILY SSF48179 185 289 5.61E-10 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMF_1011 2897ce1c21016e8ec65a3a670082bf44 185 Gene3D G3DSA:3.40.50.1950 1 181 1.3E-54 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMF_1011 2897ce1c21016e8ec65a3a670082bf44 185 Pfam PF02441 Flavoprotein 1 172 1.6E-43 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AMF_1011 2897ce1c21016e8ec65a3a670082bf44 185 SUPERFAMILY SSF52507 1 175 1.7E-54 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMF_967 c66f59d5ee2b349cffac9818b872b279 514 SUPERFAMILY SSF48019 281 398 5.44E-8 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMF_967 c66f59d5ee2b349cffac9818b872b279 514 Gene3D G3DSA:3.40.50.300 50 214 1.8E-87 T 13-10-2018 AMF_967 c66f59d5ee2b349cffac9818b872b279 514 SMART SM00382 74 216 1.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_967 c66f59d5ee2b349cffac9818b872b279 514 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 42 389 1.2E-110 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 AMF_967 c66f59d5ee2b349cffac9818b872b279 514 SUPERFAMILY SSF52540 72 267 2.7E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_967 c66f59d5ee2b349cffac9818b872b279 514 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 271 401 1.4E-18 T 13-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 AMF_967 c66f59d5ee2b349cffac9818b872b279 514 Gene3D G3DSA:1.10.8.60 46 276 1.8E-87 T 13-10-2018 AMF_967 c66f59d5ee2b349cffac9818b872b279 514 Pfam PF13177 DNA polymerase III, delta subunit 58 214 1.6E-32 T 13-10-2018 AMF_931 54e520d54991be7f8e93ad212b0f65f5 106 TIGRFAM TIGR00029 S20: ribosomal protein bS20 11 96 8.7E-17 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_931 54e520d54991be7f8e93ad212b0f65f5 106 Gene3D G3DSA:1.20.58.110 11 97 1.2E-21 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_931 54e520d54991be7f8e93ad212b0f65f5 106 Pfam PF01649 Ribosomal protein S20 12 95 2.0E-22 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_931 54e520d54991be7f8e93ad212b0f65f5 106 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 11 96 14.711 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_931 54e520d54991be7f8e93ad212b0f65f5 106 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 45 103 3.0E-12 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_931 54e520d54991be7f8e93ad212b0f65f5 106 SUPERFAMILY SSF46992 13 97 4.19E-23 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_747 480f4764e4f38ef9cc35fc2f185de7b1 426 Gene3D G3DSA:1.25.40.10 257 410 5.4E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMF_747 480f4764e4f38ef9cc35fc2f185de7b1 426 SUPERFAMILY SSF48452 264 376 2.47E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMF_747 480f4764e4f38ef9cc35fc2f185de7b1 426 SMART SM00028 292 325 0.0052 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMF_747 480f4764e4f38ef9cc35fc2f185de7b1 426 Pfam PF01435 Peptidase family M48 33 219 4.0E-26 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMF_747 480f4764e4f38ef9cc35fc2f185de7b1 426 SUPERFAMILY SSF55486 62 141 9.29E-10 T 13-10-2018 AMF_304 1c028cbfb4a216fefd0a90e54faa0076 430 Gene3D G3DSA:1.20.1250.20 12 416 2.5E-39 T 13-10-2018 AMF_304 1c028cbfb4a216fefd0a90e54faa0076 430 Pfam PF00083 Sugar (and other) transporter 15 227 1.3E-17 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMF_304 1c028cbfb4a216fefd0a90e54faa0076 430 SUPERFAMILY SSF103473 14 413 7.06E-37 T 13-10-2018 IPR036259 MFS transporter superfamily AMF_078 870b0f236049d5e02c4a27301946bcfd 211 Gene3D G3DSA:3.40.50.300 1 201 2.0E-55 T 13-10-2018 AMF_078 870b0f236049d5e02c4a27301946bcfd 211 ProSitePatterns PS01331 Thymidylate kinase signature. 92 104 - T 13-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMF_078 870b0f236049d5e02c4a27301946bcfd 211 Hamap MF_00165 Thymidylate kinase [tmk]. 1 207 25.562 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMF_078 870b0f236049d5e02c4a27301946bcfd 211 Pfam PF02223 Thymidylate kinase 5 183 6.2E-37 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 AMF_078 870b0f236049d5e02c4a27301946bcfd 211 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 183 1.8E-42 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMF_078 870b0f236049d5e02c4a27301946bcfd 211 SUPERFAMILY SSF52540 1 192 8.13E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_830 9eb8db45ccc1e3df7ac93aa00b542a47 147 SUPERFAMILY SSF54637 4 146 2.96E-44 T 13-10-2018 IPR029069 HotDog domain superfamily AMF_830 9eb8db45ccc1e3df7ac93aa00b542a47 147 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 6 146 2.6E-51 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMF_830 9eb8db45ccc1e3df7ac93aa00b542a47 147 Gene3D G3DSA:3.10.129.10 1 147 2.1E-58 T 13-10-2018 AMF_830 9eb8db45ccc1e3df7ac93aa00b542a47 147 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 5 147 30.752 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMF_830 9eb8db45ccc1e3df7ac93aa00b542a47 147 Pfam PF07977 FabA-like domain 14 140 6.9E-32 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMF_050 8a3eabcdc0765fecda842cb7ea41b85d 356 Gene3D G3DSA:3.40.190.10 43 319 1.4E-120 T 13-10-2018 AMF_050 8a3eabcdc0765fecda842cb7ea41b85d 356 PIRSF PIRSF002825 11 356 4.1E-85 T 13-10-2018 IPR026045 Ferric binding protein AMF_050 8a3eabcdc0765fecda842cb7ea41b85d 356 SUPERFAMILY SSF53850 40 356 5.2E-73 T 13-10-2018 AMF_050 8a3eabcdc0765fecda842cb7ea41b85d 356 Pfam PF13343 Bacterial extracellular solute-binding protein 90 314 6.3E-20 T 13-10-2018 AMF_050 8a3eabcdc0765fecda842cb7ea41b85d 356 Gene3D G3DSA:3.40.190.10 141 353 1.4E-120 T 13-10-2018 AMF_350 a149525dc41b1fcd1cdb7eb4dba289b0 128 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 30 49 1.1E-6 T 13-10-2018 AMF_350 a149525dc41b1fcd1cdb7eb4dba289b0 128 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 10 30 1.1E-6 T 13-10-2018 AMF_841 21d4a60cf857dd2eeaac1e8f56a54247 80 Pfam PF00137 ATP synthase subunit C 14 75 2.2E-11 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AMF_841 21d4a60cf857dd2eeaac1e8f56a54247 80 SUPERFAMILY SSF81333 5 77 5.75E-16 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily AMF_841 21d4a60cf857dd2eeaac1e8f56a54247 80 PRINTS PR00124 ATP synthase C subunit signature 34 49 4.2E-16 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_841 21d4a60cf857dd2eeaac1e8f56a54247 80 PRINTS PR00124 ATP synthase C subunit signature 13 32 4.2E-16 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_841 21d4a60cf857dd2eeaac1e8f56a54247 80 PRINTS PR00124 ATP synthase C subunit signature 51 76 4.2E-16 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_841 21d4a60cf857dd2eeaac1e8f56a54247 80 Gene3D G3DSA:1.20.20.10 7 79 1.4E-19 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_566 e67e9826e2a46112878e311ceaf5d921 205 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 9 194 24.124 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AMF_566 e67e9826e2a46112878e311ceaf5d921 205 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 6 190 3.1E-62 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AMF_566 e67e9826e2a46112878e311ceaf5d921 205 Gene3D G3DSA:3.40.50.300 1 198 1.9E-47 T 13-10-2018 AMF_566 e67e9826e2a46112878e311ceaf5d921 205 SUPERFAMILY SSF52540 11 196 5.05E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_566 e67e9826e2a46112878e311ceaf5d921 205 Pfam PF01926 50S ribosome-binding GTPase 24 142 6.3E-21 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 AMF_551 120ef61c04b40e2375dc57d992c4bc20 633 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 66 122 2.2E-22 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_551 120ef61c04b40e2375dc57d992c4bc20 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 324 336 6.9E-61 T 13-10-2018 AMF_551 120ef61c04b40e2375dc57d992c4bc20 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 425 444 6.9E-61 T 13-10-2018 AMF_551 120ef61c04b40e2375dc57d992c4bc20 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 83 108 6.9E-61 T 13-10-2018 AMF_551 120ef61c04b40e2375dc57d992c4bc20 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 234 255 6.9E-61 T 13-10-2018 AMF_551 120ef61c04b40e2375dc57d992c4bc20 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 256 282 6.9E-61 T 13-10-2018 AMF_551 120ef61c04b40e2375dc57d992c4bc20 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 111 131 6.9E-61 T 13-10-2018 AMF_551 120ef61c04b40e2375dc57d992c4bc20 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 158 179 6.9E-61 T 13-10-2018 AMF_551 120ef61c04b40e2375dc57d992c4bc20 633 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 12 625 3.6E-209 T 13-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_551 120ef61c04b40e2375dc57d992c4bc20 633 Pfam PF00361 Proton-conducting membrane transporter 134 428 3.5E-81 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_569 b072aef0a2f0ea69d0692ef8c28dfa9f 515 Pfam PF01039 Carboxyl transferase domain 32 513 3.0E-188 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMF_569 b072aef0a2f0ea69d0692ef8c28dfa9f 515 Gene3D G3DSA:3.90.226.10 6 260 1.2E-90 T 13-10-2018 AMF_569 b072aef0a2f0ea69d0692ef8c28dfa9f 515 Gene3D G3DSA:3.90.226.10 264 515 6.1E-90 T 13-10-2018 AMF_569 b072aef0a2f0ea69d0692ef8c28dfa9f 515 SUPERFAMILY SSF52096 229 515 9.12E-89 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMF_569 b072aef0a2f0ea69d0692ef8c28dfa9f 515 SUPERFAMILY SSF52096 10 255 2.28E-74 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMF_960 34c7aab85464bbeab27ad7160666af33 174 Pfam PF02464 Competence-damaged protein 12 167 2.9E-38 T 13-10-2018 IPR008136 CinA, C-terminal AMF_960 34c7aab85464bbeab27ad7160666af33 174 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 15 167 6.1E-28 T 13-10-2018 IPR008136 CinA, C-terminal AMF_960 34c7aab85464bbeab27ad7160666af33 174 SUPERFAMILY SSF142433 6 168 3.66E-37 T 13-10-2018 IPR036653 CinA-like, C-terminal AMF_960 34c7aab85464bbeab27ad7160666af33 174 Gene3D G3DSA:3.90.950.20 2 174 9.4E-43 T 13-10-2018 IPR036653 CinA-like, C-terminal AMF_181 d68dabcdafb3f2fa2972b71bb3085c26 497 SUPERFAMILY SSF56300 119 394 1.05E-21 T 13-10-2018 AMF_181 d68dabcdafb3f2fa2972b71bb3085c26 497 Gene3D G3DSA:3.60.21.10 132 372 5.5E-11 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like AMF_181 d68dabcdafb3f2fa2972b71bb3085c26 497 Pfam PF00149 Calcineurin-like phosphoesterase 119 347 2.2E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMF_416 288b2e5bf65e2f5d54d3b9b26abd9ce0 268 Gene3D G3DSA:3.20.20.70 18 267 4.2E-68 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_416 288b2e5bf65e2f5d54d3b9b26abd9ce0 268 SUPERFAMILY SSF51351 28 265 2.09E-65 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_416 288b2e5bf65e2f5d54d3b9b26abd9ce0 268 Pfam PF00121 Triosephosphate isomerase 31 262 3.9E-57 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMF_688 401cdf4dab4b1185d450ed89e5bc2a4a 68 SUPERFAMILY SSF46561 5 63 1.57E-10 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_688 401cdf4dab4b1185d450ed89e5bc2a4a 68 Gene3D G3DSA:1.10.287.310 3 64 3.9E-9 T 13-10-2018 AMF_688 401cdf4dab4b1185d450ed89e5bc2a4a 68 Pfam PF00831 Ribosomal L29 protein 6 60 4.4E-10 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_688 401cdf4dab4b1185d450ed89e5bc2a4a 68 TIGRFAM TIGR00012 L29: ribosomal protein uL29 6 61 9.9E-8 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_688 401cdf4dab4b1185d450ed89e5bc2a4a 68 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 61 10.806 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_043 afa9297aaa04d58915b02059b48cefa8 128 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 113 1.7E-45 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_043 afa9297aaa04d58915b02059b48cefa8 128 SUPERFAMILY SSF74731 3 113 4.58E-47 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_043 afa9297aaa04d58915b02059b48cefa8 128 Pfam PF00453 Ribosomal protein L20 3 108 1.9E-46 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_043 afa9297aaa04d58915b02059b48cefa8 128 Gene3D G3DSA:1.10.1900.20 56 117 3.1E-27 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_043 afa9297aaa04d58915b02059b48cefa8 128 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_043 afa9297aaa04d58915b02059b48cefa8 128 Gene3D G3DSA:1.10.720.90 2 55 5.1E-22 T 13-10-2018 AMF_043 afa9297aaa04d58915b02059b48cefa8 128 PRINTS PR00062 Ribosomal protein L20 signature 42 71 7.6E-35 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_043 afa9297aaa04d58915b02059b48cefa8 128 PRINTS PR00062 Ribosomal protein L20 signature 75 101 7.6E-35 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_043 afa9297aaa04d58915b02059b48cefa8 128 PRINTS PR00062 Ribosomal protein L20 signature 12 41 7.6E-35 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_043 afa9297aaa04d58915b02059b48cefa8 128 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 71 1.0E-12 T 13-10-2018 AMF_043 afa9297aaa04d58915b02059b48cefa8 128 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 28.074 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_949 ae3a5764d26b2f7a83aefc0506820913 331 SUPERFAMILY SSF56925 111 280 2.88E-12 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_949 ae3a5764d26b2f7a83aefc0506820913 331 Pfam PF01617 Surface antigen 95 329 1.2E-19 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_103 be3ef50599cb496714b883c0ff9537ca 341 Hamap MF_01665 Heme A synthase [ctaA]. 4 329 23.212 T 13-10-2018 IPR023754 Heme A synthase, type 2 GO:0006784|GO:0016020|GO:0016627|GO:0055114 Reactome: R-HSA-189451 AMF_103 be3ef50599cb496714b883c0ff9537ca 341 Pfam PF02628 Cytochrome oxidase assembly protein 9 318 1.6E-98 T 13-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 AMF_796 a0905329e35a21f5fc1133d008462734 809 Gene3D G3DSA:3.40.50.300 603 778 6.2E-7 T 13-10-2018 AMF_796 a0905329e35a21f5fc1133d008462734 809 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 219 406 1.4E-19 T 13-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 AMF_644 aaa5e64038a1d8826ddae847b428e577 606 Pfam PF02867 Ribonucleotide reductase, barrel domain 93 413 9.8E-75 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_644 aaa5e64038a1d8826ddae847b428e577 606 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 24 89 1.3E-13 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_644 aaa5e64038a1d8826ddae847b428e577 606 Pfam PF02867 Ribonucleotide reductase, barrel domain 422 567 1.0E-32 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_644 aaa5e64038a1d8826ddae847b428e577 606 PRINTS PR01183 Ribonucleotide reductase large chain signature 357 379 1.1E-18 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_644 aaa5e64038a1d8826ddae847b428e577 606 PRINTS PR01183 Ribonucleotide reductase large chain signature 385 408 1.1E-18 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_644 aaa5e64038a1d8826ddae847b428e577 606 PRINTS PR01183 Ribonucleotide reductase large chain signature 166 185 1.1E-18 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_644 aaa5e64038a1d8826ddae847b428e577 606 PRINTS PR01183 Ribonucleotide reductase large chain signature 278 289 1.1E-18 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_644 aaa5e64038a1d8826ddae847b428e577 606 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 31 412 2.4E-104 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_644 aaa5e64038a1d8826ddae847b428e577 606 SUPERFAMILY SSF48168 17 88 1.83E-14 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMF_644 aaa5e64038a1d8826ddae847b428e577 606 Gene3D G3DSA:3.20.70.20 2 578 3.7E-170 T 13-10-2018 AMF_644 aaa5e64038a1d8826ddae847b428e577 606 SUPERFAMILY SSF51998 91 572 2.59E-135 T 13-10-2018 AMF_806 576089a2eb20014bebd06df9046f71fc 204 Gene3D G3DSA:2.50.20.10 36 199 1.0E-10 T 13-10-2018 AMF_806 576089a2eb20014bebd06df9046f71fc 204 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 48 197 2.2E-10 T 13-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like AMF_806 576089a2eb20014bebd06df9046f71fc 204 SUPERFAMILY SSF89392 37 197 4.32E-23 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMF_105 573bb5612c3ce0bb7c66dbb5ea24f325 214 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 8 195 1.5E-49 T 13-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 AMF_105 573bb5612c3ce0bb7c66dbb5ea24f325 214 Pfam PF00005 ABC transporter 24 160 4.4E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_105 573bb5612c3ce0bb7c66dbb5ea24f325 214 Gene3D G3DSA:3.40.50.300 2 204 5.7E-43 T 13-10-2018 AMF_105 573bb5612c3ce0bb7c66dbb5ea24f325 214 SMART SM00382 32 208 4.2E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_105 573bb5612c3ce0bb7c66dbb5ea24f325 214 SUPERFAMILY SSF52540 5 197 4.75E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_105 573bb5612c3ce0bb7c66dbb5ea24f325 214 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_420 b578853a4247894e306709e5856094f0 117 Gene3D G3DSA:3.30.1130.10 2 108 2.1E-16 T 13-10-2018 AMF_420 b578853a4247894e306709e5856094f0 117 SMART SM00905 5 109 2.0E-22 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMF_420 b578853a4247894e306709e5856094f0 117 Pfam PF02152 Dihydroneopterin aldolase 6 102 2.7E-17 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMF_420 b578853a4247894e306709e5856094f0 117 TIGRFAM TIGR00526 folB_dom: FolB domain 4 110 4.5E-18 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMF_420 b578853a4247894e306709e5856094f0 117 SUPERFAMILY SSF55620 5 110 6.12E-22 T 13-10-2018 AMF_417 cebba9529c7e457d31b2ca658c546580 339 SUPERFAMILY SSF53850 39 338 1.52E-69 T 13-10-2018 AMF_417 cebba9529c7e457d31b2ca658c546580 339 Pfam PF16868 NMT1-like family 43 336 1.4E-82 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AMF_417 cebba9529c7e457d31b2ca658c546580 339 Gene3D G3DSA:3.40.190.10 43 336 8.1E-93 T 13-10-2018 AMF_417 cebba9529c7e457d31b2ca658c546580 339 Gene3D G3DSA:3.40.190.10 134 272 8.1E-93 T 13-10-2018 AMF_417 cebba9529c7e457d31b2ca658c546580 339 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 12 336 5.6E-78 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AMF_423 4bae91b42e73d67c662c2f3a892b2554 241 SUPERFAMILY SSF50447 96 179 1.67E-23 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMF_423 4bae91b42e73d67c662c2f3a892b2554 241 Gene3D G3DSA:3.40.50.300 15 94 1.8E-16 T 13-10-2018 AMF_423 4bae91b42e73d67c662c2f3a892b2554 241 Gene3D G3DSA:2.40.30.10 95 206 3.0E-37 T 13-10-2018 AMF_423 4bae91b42e73d67c662c2f3a892b2554 241 SUPERFAMILY SSF52540 20 94 1.53E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_838 e2889b5ff109965255253a2e726812d4 450 SUPERFAMILY SSF56796 60 343 5.36E-53 T 13-10-2018 AMF_838 e2889b5ff109965255253a2e726812d4 450 Gene3D G3DSA:3.40.50.1970 56 201 1.3E-28 T 13-10-2018 AMF_838 e2889b5ff109965255253a2e726812d4 450 Pfam PF13685 Iron-containing alcohol dehydrogenase 65 315 1.2E-49 T 13-10-2018 IPR032837 Glycerol-1-phosphate dehydrogenase KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 AMF_797 d8c857258d59734f335a25c0593eb180 124 Pfam PF04956 TrbC/VIRB2 family 5 102 8.8E-17 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_980 fdbbad5c51140c7f06a16da66b05e035 198 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 12 198 19.037 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMF_980 fdbbad5c51140c7f06a16da66b05e035 198 Pfam PF02660 Glycerol-3-phosphate acyltransferase 17 189 1.9E-44 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMF_980 fdbbad5c51140c7f06a16da66b05e035 198 SMART SM01207 15 190 7.4E-69 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMF_980 fdbbad5c51140c7f06a16da66b05e035 198 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 13 197 4.1E-50 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMF_385 99895599f7042affef2c948a61f33e78 409 Pfam PF00375 Sodium:dicarboxylate symporter family 35 400 3.1E-31 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMF_385 99895599f7042affef2c948a61f33e78 409 Gene3D G3DSA:1.10.3860.10 29 407 2.1E-23 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMF_385 99895599f7042affef2c948a61f33e78 409 SUPERFAMILY SSF118215 52 400 6.54E-44 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMF_066 742311b7f56b3f190b39519670008e40 312 Gene3D G3DSA:1.20.1530.20 154 312 3.6E-6 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily AMF_849 2063162f950119ec4b9fc7f8baf70c7a 249 Pfam PF05494 MlaC protein 84 225 1.3E-20 T 13-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AMF_849 2063162f950119ec4b9fc7f8baf70c7a 249 Gene3D G3DSA:3.10.450.710 67 232 1.5E-13 T 13-10-2018 AMF_037 d7f15b02a08a235617b61749f8ab5f46 89 SUPERFAMILY SSF54565 3 79 9.55E-30 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_037 d7f15b02a08a235617b61749f8ab5f46 89 Pfam PF00886 Ribosomal protein S16 9 70 7.0E-25 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_037 d7f15b02a08a235617b61749f8ab5f46 89 Gene3D G3DSA:3.30.1320.10 1 87 1.8E-30 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_037 d7f15b02a08a235617b61749f8ab5f46 89 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 80 23.924 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_037 d7f15b02a08a235617b61749f8ab5f46 89 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 79 1.2E-28 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_989 462f570d1c58162cff2d52a885621cd6 123 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMF_989 462f570d1c58162cff2d52a885621cd6 123 Pfam PF11953 Domain of unknown function (DUF3470) 81 120 6.7E-13 T 13-10-2018 IPR022569 Ferredoxin, C-terminal AMF_989 462f570d1c58162cff2d52a885621cd6 123 Pfam PF00037 4Fe-4S binding domain 34 55 1.9E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMF_989 462f570d1c58162cff2d52a885621cd6 123 Gene3D G3DSA:3.30.70.20 2 121 2.8E-24 T 13-10-2018 AMF_989 462f570d1c58162cff2d52a885621cd6 123 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.4E-17 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMF_989 462f570d1c58162cff2d52a885621cd6 123 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.4E-17 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMF_989 462f570d1c58162cff2d52a885621cd6 123 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.4E-17 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMF_989 462f570d1c58162cff2d52a885621cd6 123 SUPERFAMILY SSF54862 3 69 5.12E-23 T 13-10-2018 AMF_337 e168dbb195c1d2d2a5225e36b1caaebe 177 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 34 171 1.1E-28 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMF_337 e168dbb195c1d2d2a5225e36b1caaebe 177 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 28 175 22.809 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMF_337 e168dbb195c1d2d2a5225e36b1caaebe 177 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 33 172 5.8E-38 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMF_337 e168dbb195c1d2d2a5225e36b1caaebe 177 Gene3D G3DSA:3.40.50.960 23 177 1.8E-40 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMF_337 e168dbb195c1d2d2a5225e36b1caaebe 177 SUPERFAMILY SSF52121 24 175 3.4E-42 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMF_636 40087dc56404dddc110774438affb694 99 Pfam PF03334 Na+/H+ antiporter subunit 10 87 6.0E-18 T 13-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 AMF_947 47be883e7636308a17a2892abe73dc99 130 Pfam PF04956 TrbC/VIRB2 family 15 105 1.1E-15 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_645 b78f326cd04cb725b368f9e34dd9e2c8 291 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 92 108 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMF_645 b78f326cd04cb725b368f9e34dd9e2c8 291 Pfam PF00348 Polyprenyl synthetase 42 239 5.6E-47 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AMF_645 b78f326cd04cb725b368f9e34dd9e2c8 291 Gene3D G3DSA:1.10.600.10 3 289 7.2E-75 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMF_645 b78f326cd04cb725b368f9e34dd9e2c8 291 SUPERFAMILY SSF48576 15 273 2.06E-64 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMF_097 353c1ee54b504cb93e47afddcfc48258 294 Pfam PF01148 Cytidylyltransferase family 137 285 3.3E-51 T 13-10-2018 AMF_771 af1392840fa5f696d148dcecd6eb142e 168 SMART SM01323 62 146 2.4E-39 T 13-10-2018 IPR003849 Preprotein translocase YajC AMF_771 af1392840fa5f696d148dcecd6eb142e 168 Pfam PF02699 Preprotein translocase subunit 67 143 4.5E-26 T 13-10-2018 IPR003849 Preprotein translocase YajC AMF_771 af1392840fa5f696d148dcecd6eb142e 168 PRINTS PR01853 Bacterial YajC preprotein translocase signature 102 120 5.9E-15 T 13-10-2018 IPR003849 Preprotein translocase YajC AMF_771 af1392840fa5f696d148dcecd6eb142e 168 PRINTS PR01853 Bacterial YajC preprotein translocase signature 64 84 5.9E-15 T 13-10-2018 IPR003849 Preprotein translocase YajC AMF_771 af1392840fa5f696d148dcecd6eb142e 168 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 67 146 1.5E-27 T 13-10-2018 IPR003849 Preprotein translocase YajC AMF_1030 d197ce3ef1a36120060a3d9e3e83142d 253 SUPERFAMILY SSF53448 22 248 1.27E-43 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMF_1030 d197ce3ef1a36120060a3d9e3e83142d 253 Gene3D G3DSA:3.90.550.10 20 246 2.8E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMF_1030 d197ce3ef1a36120060a3d9e3e83142d 253 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 22 248 3.3E-47 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMF_238 7758534d18cad136736f03e653f5ae0f 93 Pfam PF02325 YGGT family 11 86 7.5E-14 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 AMF_107 e8a56f36a3a2751da09d3c37c1db2cbe 185 Hamap MF_00146 dCTP deaminase [dcd]. 1 184 25.66 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 AMF_107 e8a56f36a3a2751da09d3c37c1db2cbe 185 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 13 182 5.9E-43 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 AMF_107 e8a56f36a3a2751da09d3c37c1db2cbe 185 SUPERFAMILY SSF51283 4 182 2.36E-43 T 13-10-2018 IPR036157 dUTPase-like superfamily AMF_107 e8a56f36a3a2751da09d3c37c1db2cbe 185 Gene3D G3DSA:2.70.40.10 1 156 1.9E-50 T 13-10-2018 IPR036157 dUTPase-like superfamily AMF_769 5d264af381505807a6b2861b22ff479f 309 SUPERFAMILY SSF48452 52 252 7.01E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMF_769 5d264af381505807a6b2861b22ff479f 309 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 21 252 24.717 T 13-10-2018 IPR017689 Outer membrane protein assembly factor BamD AMF_769 5d264af381505807a6b2861b22ff479f 309 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 26 248 1.1E-55 T 13-10-2018 IPR017689 Outer membrane protein assembly factor BamD AMF_769 5d264af381505807a6b2861b22ff479f 309 Gene3D G3DSA:1.25.40.10 52 254 5.0E-44 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMF_769 5d264af381505807a6b2861b22ff479f 309 Pfam PF13525 Outer membrane lipoprotein 53 242 7.1E-40 T 13-10-2018 IPR039565 Outer membrane lipoprotein BamD-like AMF_447 0d4daa62f593d8fecd20dec47b16b7a7 102 TIGRFAM TIGR00061 L21: ribosomal protein bL21 4 100 1.6E-20 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_447 0d4daa62f593d8fecd20dec47b16b7a7 102 Pfam PF00829 Ribosomal prokaryotic L21 protein 3 100 5.5E-29 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_447 0d4daa62f593d8fecd20dec47b16b7a7 102 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 3 102 18.859 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_447 0d4daa62f593d8fecd20dec47b16b7a7 102 SUPERFAMILY SSF141091 3 101 6.93E-28 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_205 d76661281f1fc1cec54d11b0adbc43c1 250 Pfam PF02230 Phospholipase/Carboxylesterase 46 242 2.8E-29 T 13-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 AMF_205 d76661281f1fc1cec54d11b0adbc43c1 250 SUPERFAMILY SSF53474 42 243 8.31E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AMF_205 d76661281f1fc1cec54d11b0adbc43c1 250 Gene3D G3DSA:3.40.50.1820 44 245 1.7E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AMF_489 72befe8f8380e3e84cc94c63295b6813 408 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 8 407 7.0E-201 T 13-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 AMF_489 72befe8f8380e3e84cc94c63295b6813 408 Gene3D G3DSA:3.90.1150.10 11 379 1.5E-153 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMF_489 72befe8f8380e3e84cc94c63295b6813 408 Pfam PF00266 Aminotransferase class-V 11 372 1.1E-81 T 13-10-2018 IPR000192 Aminotransferase class V domain AMF_489 72befe8f8380e3e84cc94c63295b6813 408 PIRSF PIRSF005572 8 389 5.6E-131 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMF_489 72befe8f8380e3e84cc94c63295b6813 408 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 200 219 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMF_489 72befe8f8380e3e84cc94c63295b6813 408 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 7 400 54.068 T 13-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 AMF_489 72befe8f8380e3e84cc94c63295b6813 408 Gene3D G3DSA:3.40.640.10 22 266 1.5E-153 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMF_489 72befe8f8380e3e84cc94c63295b6813 408 SUPERFAMILY SSF53383 9 396 6.58E-105 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMF_1007 dc01a8013a6695ea8c3082d567cf3895 222 Pfam PF13717 zinc-ribbon domain 13 48 1.4E-15 T 13-10-2018 IPR011723 Zinc finger/thioredoxin putative AMF_1007 dc01a8013a6695ea8c3082d567cf3895 222 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 13 47 2.0E-14 T 13-10-2018 IPR011723 Zinc finger/thioredoxin putative AMF_287 87fd4ce382ea9513aa1d6ea8bee3eeba 294 Gene3D G3DSA:3.40.50.1980 181 292 2.1E-24 T 13-10-2018 AMF_287 87fd4ce382ea9513aa1d6ea8bee3eeba 294 Pfam PF01297 Zinc-uptake complex component A periplasmic 29 288 1.1E-46 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AMF_287 87fd4ce382ea9513aa1d6ea8bee3eeba 294 SUPERFAMILY SSF53807 27 290 1.28E-56 T 13-10-2018 AMF_287 87fd4ce382ea9513aa1d6ea8bee3eeba 294 Gene3D G3DSA:3.40.50.1980 24 180 4.3E-32 T 13-10-2018 AMF_587 fd94b5e94620d287125f7638fce64717 365 Gene3D G3DSA:1.10.287.610 143 193 1.7E-16 T 13-10-2018 AMF_587 fd94b5e94620d287125f7638fce64717 365 Pfam PF00318 Ribosomal protein S2 50 266 6.3E-87 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_587 fd94b5e94620d287125f7638fce64717 365 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 200 224 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMF_587 fd94b5e94620d287125f7638fce64717 365 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 46 266 7.5E-91 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_587 fd94b5e94620d287125f7638fce64717 365 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 47 58 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMF_587 fd94b5e94620d287125f7638fce64717 365 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 43 276 39.053 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_587 fd94b5e94620d287125f7638fce64717 365 SUPERFAMILY SSF52313 47 270 1.7E-86 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily AMF_587 fd94b5e94620d287125f7638fce64717 365 PRINTS PR00395 Ribosomal protein S2 signature 238 252 1.3E-33 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_587 fd94b5e94620d287125f7638fce64717 365 PRINTS PR00395 Ribosomal protein S2 signature 47 65 1.3E-33 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_587 fd94b5e94620d287125f7638fce64717 365 PRINTS PR00395 Ribosomal protein S2 signature 200 217 1.3E-33 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_587 fd94b5e94620d287125f7638fce64717 365 PRINTS PR00395 Ribosomal protein S2 signature 130 147 1.3E-33 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_587 fd94b5e94620d287125f7638fce64717 365 PRINTS PR00395 Ribosomal protein S2 signature 217 228 1.3E-33 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_412 b4da8c1258ff6563123b4a2921e20630 295 PIRSF PIRSF035875 23 295 4.2E-52 T 13-10-2018 IPR017039 Virulence factor BrkB AMF_412 b4da8c1258ff6563123b4a2921e20630 295 Pfam PF03631 Virulence factor BrkB 42 294 2.5E-51 T 13-10-2018 IPR017039 Virulence factor BrkB AMF_412 b4da8c1258ff6563123b4a2921e20630 295 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 39 292 1.8E-28 T 13-10-2018 IPR017039 Virulence factor BrkB AMF_018 a62d24f37f0729e614dd02f83811bbdb 312 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 7 86 2.2E-16 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMF_018 a62d24f37f0729e614dd02f83811bbdb 312 Gene3D G3DSA:1.10.150.130 3 98 4.0E-22 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal AMF_018 a62d24f37f0729e614dd02f83811bbdb 312 Gene3D G3DSA:1.10.443.10 103 308 5.9E-47 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMF_018 a62d24f37f0729e614dd02f83811bbdb 312 Pfam PF00589 Phage integrase family 110 292 1.8E-34 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMF_018 a62d24f37f0729e614dd02f83811bbdb 312 SUPERFAMILY SSF56349 6 300 8.83E-52 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMF_419 a68c0d461d8ac32c140b0e1acbf919af 216 Pfam PF06271 RDD family 40 189 3.2E-19 T 13-10-2018 IPR010432 RDD AMF_142 bb43115aa30768e80661f182ba49b94d 179 Gene3D G3DSA:1.10.760.10 40 173 1.3E-37 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMF_142 bb43115aa30768e80661f182ba49b94d 179 SUPERFAMILY SSF46626 73 175 1.11E-29 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMF_142 bb43115aa30768e80661f182ba49b94d 179 Pfam PF00034 Cytochrome c 77 174 3.2E-8 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_142 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 147 157 5.5E-17 T 13-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_142 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 164 172 5.5E-17 T 13-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_142 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 85 92 5.5E-17 T 13-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_142 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 98 113 5.5E-17 T 13-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_142 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 114 124 5.5E-17 T 13-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_142 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 128 144 5.5E-17 T 13-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_146 ec2e81eb8cd8fd5504168edd7f9b0bc4 169 Pfam PF06271 RDD family 7 152 1.2E-8 T 13-10-2018 IPR010432 RDD AMF_601 549265e4f4a235c3fd285eed06234d25 205 TIGRFAM TIGR02217 chp_TIGR02217: TIGR02217 family protein 9 204 3.4E-60 T 13-10-2018 IPR011740 Protein of unknown function DUF2460 AMF_601 549265e4f4a235c3fd285eed06234d25 205 Pfam PF09343 Conserved hypothetical protein 2217 (DUF2460) 9 203 7.4E-71 T 13-10-2018 IPR011740 Protein of unknown function DUF2460 AMF_787 bc69bac0ef3e8e0ac8195a1afc430f2a 146 Hamap MF_00791 Protein ApaG [apaG]. 17 146 28.216 T 13-10-2018 IPR023065 Uncharacterised protein family ApaG AMF_787 bc69bac0ef3e8e0ac8195a1afc430f2a 146 SUPERFAMILY SSF110069 21 143 4.32E-44 T 13-10-2018 IPR036767 ApaG domain superfamily AMF_787 bc69bac0ef3e8e0ac8195a1afc430f2a 146 Pfam PF04379 ApaG domain 35 119 1.3E-31 T 13-10-2018 IPR007474 ApaG domain AMF_787 bc69bac0ef3e8e0ac8195a1afc430f2a 146 Gene3D G3DSA:2.60.40.1470 19 145 2.9E-43 T 13-10-2018 IPR036767 ApaG domain superfamily AMF_203 8cb6c78b77363995a17080a32368080a 389 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 324 344 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AMF_203 8cb6c78b77363995a17080a32368080a 389 Pfam PF01180 Dihydroorotate dehydrogenase 79 372 2.4E-86 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AMF_203 8cb6c78b77363995a17080a32368080a 389 Gene3D G3DSA:3.20.20.70 38 389 1.7E-123 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_203 8cb6c78b77363995a17080a32368080a 389 SUPERFAMILY SSF51395 45 388 3.36E-94 T 13-10-2018 AMF_203 8cb6c78b77363995a17080a32368080a 389 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 114 133 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AMF_203 8cb6c78b77363995a17080a32368080a 389 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 47 387 2.2E-112 T 13-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AMF_704 df5325e608f6c6e5922abe79f717787c 139 Pfam PF05164 Cell division protein ZapA 12 89 7.9E-13 T 13-10-2018 IPR007838 Cell division protein ZapA-like AMF_704 df5325e608f6c6e5922abe79f717787c 139 SUPERFAMILY SSF102829 12 92 2.75E-13 T 13-10-2018 IPR036192 Cell division protein ZapA-like superfamily AMF_1033 fbcc4ff5d28714a4ef0de26838faf4f7 66 SUPERFAMILY SSF143034 2 64 4.97E-18 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1033 fbcc4ff5d28714a4ef0de26838faf4f7 66 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 13-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_1033 fbcc4ff5d28714a4ef0de26838faf4f7 66 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 15.341 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMF_1033 fbcc4ff5d28714a4ef0de26838faf4f7 66 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 3.6E-18 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMF_1033 fbcc4ff5d28714a4ef0de26838faf4f7 66 Gene3D G3DSA:2.40.50.530 1 65 9.1E-20 T 13-10-2018 AMF_1033 fbcc4ff5d28714a4ef0de26838faf4f7 66 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.4E-9 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMF_1033 fbcc4ff5d28714a4ef0de26838faf4f7 66 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.4E-9 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMF_1033 fbcc4ff5d28714a4ef0de26838faf4f7 66 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.4E-9 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMF_1033 fbcc4ff5d28714a4ef0de26838faf4f7 66 Pfam PF01632 Ribosomal protein L35 2 60 4.0E-16 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_574 857c7f866bbd2b5dfa19eedea2b230d4 531 Pfam PF13609 Gram-negative porin 94 487 9.4E-13 T 13-10-2018 AMF_574 857c7f866bbd2b5dfa19eedea2b230d4 531 SUPERFAMILY SSF56935 116 531 9.42E-14 T 13-10-2018 AMF_463 3f3d61e2a4e7517ae6334df7981b6354 198 Gene3D G3DSA:1.10.286.10 2 58 3.6E-8 T 13-10-2018 AMF_463 3f3d61e2a4e7517ae6334df7981b6354 198 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 72 88 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMF_463 3f3d61e2a4e7517ae6334df7981b6354 198 Pfam PF01227 GTP cyclohydrolase I 15 193 2.7E-59 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMF_463 3f3d61e2a4e7517ae6334df7981b6354 198 Gene3D G3DSA:3.30.1130.10 62 195 6.3E-42 T 13-10-2018 AMF_463 3f3d61e2a4e7517ae6334df7981b6354 198 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 120 130 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMF_463 3f3d61e2a4e7517ae6334df7981b6354 198 SUPERFAMILY SSF55620 3 194 3.85E-55 T 13-10-2018 AMF_620 bae930978ce824e26bc3a7c540b2e4d1 237 Gene3D G3DSA:3.40.50.10090 5 113 4.5E-13 T 13-10-2018 AMF_620 bae930978ce824e26bc3a7c540b2e4d1 237 Pfam PF02602 Uroporphyrinogen-III synthase HemD 20 228 2.2E-37 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_620 bae930978ce824e26bc3a7c540b2e4d1 237 SUPERFAMILY SSF69618 5 232 1.23E-37 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMF_620 bae930978ce824e26bc3a7c540b2e4d1 237 Gene3D G3DSA:3.40.50.10090 114 232 2.7E-9 T 13-10-2018 AMF_827 a5a6207786b3871aebd4123142f214a5 367 Pfam PF02163 Peptidase family M50 26 352 1.1E-67 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 AMF_827 a5a6207786b3871aebd4123142f214a5 367 SMART SM00228 132 202 8.3E-6 T 13-10-2018 IPR001478 PDZ domain GO:0005515 AMF_827 a5a6207786b3871aebd4123142f214a5 367 Gene3D G3DSA:2.30.42.10 143 229 2.4E-17 T 13-10-2018 AMF_827 a5a6207786b3871aebd4123142f214a5 367 SUPERFAMILY SSF50156 105 210 1.29E-18 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 AMF_414 aaf85d1b337dac0decfe35dd934532c5 111 Pfam PF05258 Protein of unknown function (DUF721) 17 109 2.9E-15 T 13-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 AMF_836 26dfad1860fa49b7ea66e45afcc9bd8c 228 Pfam PF02104 SURF1 family 24 211 4.3E-27 T 13-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_236 2a69aaf6c2b464d9a8f6291ba801c5e4 340 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 157 331 3.2E-51 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMF_236 2a69aaf6c2b464d9a8f6291ba801c5e4 340 Gene3D G3DSA:3.20.20.70 138 339 2.7E-60 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_236 2a69aaf6c2b464d9a8f6291ba801c5e4 340 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 146 339 21.065 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMF_236 2a69aaf6c2b464d9a8f6291ba801c5e4 340 SUPERFAMILY SSF51391 145 337 4.45E-64 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMF_236 2a69aaf6c2b464d9a8f6291ba801c5e4 340 Pfam PF02581 Thiamine monophosphate synthase 156 321 4.7E-54 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMF_996 dac44179b8006ebac55a6c94f663c3e0 229 SUPERFAMILY SSF54427 90 228 1.49E-33 T 13-10-2018 IPR032710 NTF2-like domain superfamily AMF_996 dac44179b8006ebac55a6c94f663c3e0 229 PIRSF PIRSF003299 5 229 3.3E-98 T 13-10-2018 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 AMF_996 dac44179b8006ebac55a6c94f663c3e0 229 Gene3D G3DSA:3.10.450.230 88 229 5.3E-37 T 13-10-2018 AMF_996 dac44179b8006ebac55a6c94f663c3e0 229 Pfam PF04335 VirB8 protein 20 227 1.5E-56 T 13-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 AMF_678 ee177f2ab1271147b29479ea3452b1c2 150 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 27 139 6.0E-28 T 13-10-2018 IPR021131 Ribosomal protein L18e/L15P AMF_678 ee177f2ab1271147b29479ea3452b1c2 150 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 148 16.019 T 13-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 AMF_678 ee177f2ab1271147b29479ea3452b1c2 150 Gene3D G3DSA:3.100.10.10 66 140 1.4E-11 T 13-10-2018 AMF_678 ee177f2ab1271147b29479ea3452b1c2 150 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 141 3.1E-40 T 13-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_678 ee177f2ab1271147b29479ea3452b1c2 150 SUPERFAMILY SSF52080 4 139 8.37E-33 T 13-10-2018 IPR036227 Ribosomal L18e/L15P superfamily AMF_909 5ec3753465969d5a588ba412f94a756a 327 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 87 101 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMF_909 5ec3753465969d5a588ba412f94a756a 327 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 209 221 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMF_909 5ec3753465969d5a588ba412f94a756a 327 Gene3D G3DSA:1.10.600.10 5 327 4.8E-93 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMF_909 5ec3753465969d5a588ba412f94a756a 327 Pfam PF00348 Polyprenyl synthetase 37 273 2.5E-65 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AMF_909 5ec3753465969d5a588ba412f94a756a 327 SUPERFAMILY SSF48576 9 326 3.84E-85 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMF_288 09f16be0d25e0d6e27f94c3ff9d740ab 245 SUPERFAMILY SSF52540 23 237 2.92E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_288 09f16be0d25e0d6e27f94c3ff9d740ab 245 Gene3D G3DSA:3.40.50.300 16 242 3.0E-50 T 13-10-2018 AMF_288 09f16be0d25e0d6e27f94c3ff9d740ab 245 Pfam PF00005 ABC transporter 43 172 3.8E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_288 09f16be0d25e0d6e27f94c3ff9d740ab 245 SMART SM00382 51 223 3.0E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_988 7252961c6eb274ce86a0b54615393ba2 318 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 14 317 3.6E-106 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMF_988 7252961c6eb274ce86a0b54615393ba2 318 Pfam PF02445 Quinolinate synthetase A protein 18 315 3.2E-113 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMF_988 7252961c6eb274ce86a0b54615393ba2 318 SUPERFAMILY SSF142754 14 316 7.06E-111 T 13-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMF_988 7252961c6eb274ce86a0b54615393ba2 318 Hamap MF_00568 Quinolinate synthase A [nadA]. 13 317 42.438 T 13-10-2018 IPR023066 Quinolinate synthase A, type 2 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMF_988 7252961c6eb274ce86a0b54615393ba2 318 Gene3D G3DSA:3.40.50.10800 181 273 6.6E-109 T 13-10-2018 AMF_988 7252961c6eb274ce86a0b54615393ba2 318 Gene3D G3DSA:3.40.50.10800 97 315 6.6E-109 T 13-10-2018 AMF_988 7252961c6eb274ce86a0b54615393ba2 318 Gene3D G3DSA:3.40.50.10800 17 298 6.6E-109 T 13-10-2018 AMF_866 66cf0eb4b39013c44e595e28ee0b55ae 415 SUPERFAMILY SSF56925 48 415 1.23E-18 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_866 66cf0eb4b39013c44e595e28ee0b55ae 415 Pfam PF01617 Surface antigen 48 415 3.6E-109 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_285 c1440715ecff5727f8b4a4b1d6b9f80a 358 SUPERFAMILY SSF50331 257 356 6.46E-9 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMF_285 c1440715ecff5727f8b4a4b1d6b9f80a 358 SUPERFAMILY SSF52540 19 261 8.92E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_285 c1440715ecff5727f8b4a4b1d6b9f80a 358 Pfam PF00005 ABC transporter 43 181 1.2E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_285 c1440715ecff5727f8b4a4b1d6b9f80a 358 Gene3D G3DSA:3.40.50.300 18 265 6.1E-65 T 13-10-2018 AMF_285 c1440715ecff5727f8b4a4b1d6b9f80a 358 SMART SM00382 44 231 1.5E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_285 c1440715ecff5727f8b4a4b1d6b9f80a 358 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_605 16a5677554bfa99dbf4f0f12d55b325a 893 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 491 707 8.3E-11 T 13-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 AMF_1047 d54cba74613b0036c298adbff6bf792a 58 Pfam PF01783 Ribosomal L32p protein family 2 55 2.7E-25 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1047 d54cba74613b0036c298adbff6bf792a 58 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 2 54 18.456 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1047 d54cba74613b0036c298adbff6bf792a 58 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 7.7E-25 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMF_1047 d54cba74613b0036c298adbff6bf792a 58 SUPERFAMILY SSF57829 2 55 3.11E-21 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMF_710 bfcca2f91c08ee6957dac28223a93065 282 Gene3D G3DSA:1.25.40.20 157 275 7.5E-16 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_710 bfcca2f91c08ee6957dac28223a93065 282 Pfam PF12796 Ankyrin repeats (3 copies) 209 268 1.8E-9 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain AMF_710 bfcca2f91c08ee6957dac28223a93065 282 SUPERFAMILY SSF48403 180 270 2.33E-14 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMF_710 bfcca2f91c08ee6957dac28223a93065 282 SMART SM00248 215 244 8.6E-5 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_710 bfcca2f91c08ee6957dac28223a93065 282 SMART SM00248 248 277 180.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMF_709 0bbcc0291cd0d9b6ca8f54008bd7e9c8 307 SUPERFAMILY SSF117892 119 247 5.62E-15 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily AMF_709 0bbcc0291cd0d9b6ca8f54008bd7e9c8 307 SMART SM00244 81 243 6.3E-17 T 13-10-2018 IPR001107 Band 7 domain AMF_709 0bbcc0291cd0d9b6ca8f54008bd7e9c8 307 Pfam PF01145 SPFH domain / Band 7 family 87 255 1.0E-21 T 13-10-2018 IPR001107 Band 7 domain AMF_709 0bbcc0291cd0d9b6ca8f54008bd7e9c8 307 Gene3D G3DSA:3.30.479.30 115 245 5.4E-14 T 13-10-2018 AMF_028 da6044d46f916326d3af85da73a994cb 264 Hamap MF_00443 Thiazole synthase [thiG]. 7 261 38.584 T 13-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AMF_028 da6044d46f916326d3af85da73a994cb 264 Pfam PF05690 Thiazole biosynthesis protein ThiG 10 255 3.9E-97 T 13-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AMF_028 da6044d46f916326d3af85da73a994cb 264 Gene3D G3DSA:3.20.20.70 1 259 4.9E-97 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_028 da6044d46f916326d3af85da73a994cb 264 SUPERFAMILY SSF110399 7 247 2.62E-80 T 13-10-2018 AMF_114 5d86fd2d534a8ceab19fbb2b2be6742e 78 Gene3D G3DSA:3.30.300.90 4 73 1.8E-27 T 13-10-2018 AMF_114 5d86fd2d534a8ceab19fbb2b2be6742e 78 PIRSF PIRSF003113 3 78 1.6E-18 T 13-10-2018 IPR002634 BolA protein AMF_114 5d86fd2d534a8ceab19fbb2b2be6742e 78 Pfam PF01722 BolA-like protein 27 71 6.8E-13 T 13-10-2018 IPR002634 BolA protein AMF_114 5d86fd2d534a8ceab19fbb2b2be6742e 78 SUPERFAMILY SSF82657 5 75 5.62E-20 T 13-10-2018 IPR036065 BolA-like superfamily AMF_071 d59e8f8124a5275f41d04e5d213b4c3c 372 Gene3D G3DSA:3.40.50.970 27 372 2.9E-131 T 13-10-2018 AMF_071 d59e8f8124a5275f41d04e5d213b4c3c 372 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 58 372 4.6E-147 T 13-10-2018 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-70268 AMF_071 d59e8f8124a5275f41d04e5d213b4c3c 372 SUPERFAMILY SSF52518 49 372 9.7E-105 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold AMF_071 d59e8f8124a5275f41d04e5d213b4c3c 372 Pfam PF00676 Dehydrogenase E1 component 66 362 5.2E-103 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AMF_442 0f70ea34a7ab0c388b99bf9ce6fcda02 244 SUPERFAMILY SSF56925 118 234 3.88E-7 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_655 c529dfed5f9777f0aac15ee651abada4 274 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 29 273 1.7E-108 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 AMF_655 c529dfed5f9777f0aac15ee651abada4 274 Pfam PF00005 ABC transporter 45 199 5.4E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_655 c529dfed5f9777f0aac15ee651abada4 274 Gene3D G3DSA:3.40.50.300 24 273 3.3E-65 T 13-10-2018 AMF_655 c529dfed5f9777f0aac15ee651abada4 274 SMART SM00382 52 247 1.3E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain AMF_655 c529dfed5f9777f0aac15ee651abada4 274 ProSitePatterns PS00211 ABC transporters family signature. 172 186 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_655 c529dfed5f9777f0aac15ee651abada4 274 SUPERFAMILY SSF52540 30 262 1.89E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_799 9f047aef4c58d1c52d72edf52ed1c858 196 Pfam PF04956 TrbC/VIRB2 family 116 183 2.0E-12 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_027 4e469348ccf8192d0368dad2ce3ce8c0 69 Gene3D G3DSA:3.10.20.30 5 69 1.6E-15 T 13-10-2018 IPR012675 Beta-grasp domain superfamily AMF_027 4e469348ccf8192d0368dad2ce3ce8c0 69 Pfam PF02597 ThiS family 8 69 7.4E-8 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AMF_027 4e469348ccf8192d0368dad2ce3ce8c0 69 SUPERFAMILY SSF54285 5 69 1.89E-11 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMF_027 4e469348ccf8192d0368dad2ce3ce8c0 69 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 7 69 1.0E-14 T 13-10-2018 IPR010035 ThiS, thiamine-biosynthesis AMF_309 d1ace50fd92cb3c7f352b0aeb95754af 488 SUPERFAMILY SSF103473 63 463 1.01E-39 T 13-10-2018 IPR036259 MFS transporter superfamily AMF_309 d1ace50fd92cb3c7f352b0aeb95754af 488 Pfam PF00083 Sugar (and other) transporter 62 271 6.9E-16 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMF_309 d1ace50fd92cb3c7f352b0aeb95754af 488 Gene3D G3DSA:1.20.1250.20 61 466 5.9E-40 T 13-10-2018 AMF_033 9d420f6dcaf698fbddeea7f70de0fffa 127 Pfam PF04956 TrbC/VIRB2 family 10 102 4.1E-16 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_428 8774707926e455220692646081a1dbb9 68 Gene3D G3DSA:3.40.190.10 1 68 5.6E-15 T 13-10-2018 AMF_428 8774707926e455220692646081a1dbb9 68 SUPERFAMILY SSF53850 3 67 2.93E-10 T 13-10-2018 AMF_428 8774707926e455220692646081a1dbb9 68 Pfam PF16868 NMT1-like family 4 65 4.9E-13 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family AMF_311 7dd903cbaf29e548327293edaf32d73a 460 Pfam PF17408 Malonyl-CoA decarboxylase N-terminal domain 94 181 4.5E-21 T 13-10-2018 IPR035372 Malonyl-CoA decarboxylase, N-terminal KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 AMF_311 7dd903cbaf29e548327293edaf32d73a 460 Pfam PF05292 Malonyl-CoA decarboxylase C-terminal domain 184 430 2.0E-102 T 13-10-2018 IPR007956 Malonyl-CoA decarboxylase, C-terminal GO:0006633|GO:0050080 KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 AMF_311 7dd903cbaf29e548327293edaf32d73a 460 Gene3D G3DSA:1.20.140.90 47 182 2.1E-21 T 13-10-2018 IPR038351 Malonyl-CoA decarboxylase, N-terminal domain superfamily KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 AMF_311 7dd903cbaf29e548327293edaf32d73a 460 Gene3D G3DSA:3.40.630.150 183 460 6.0E-106 T 13-10-2018 AMF_044 8b6614f740f42e12f3206b1b7dabf7bf 205 Pfam PF06242 Protein of unknown function (DUF1013) 45 184 1.1E-59 T 13-10-2018 IPR010421 Protein of unknown function DUF1013 AMF_139 45e2af20eed7d49f21a7a13cbc37aac8 149 Pfam PF03429 Major surface protein 1B 87 125 2.5E-17 T 13-10-2018 IPR005091 Major surface protein 1B AMF_139 45e2af20eed7d49f21a7a13cbc37aac8 149 Pfam PF03429 Major surface protein 1B 1 88 9.0E-53 T 13-10-2018 IPR005091 Major surface protein 1B AMF_127 0f6cc2eb99a00e00621e7213913be685 291 Hamap MF_01408 Flavin-dependent thymidylate synthase [thyX]. 28 246 28.234 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 AMF_127 0f6cc2eb99a00e00621e7213913be685 291 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 32 238 1.5E-62 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 AMF_127 0f6cc2eb99a00e00621e7213913be685 291 Gene3D G3DSA:3.30.1360.170 14 253 6.5E-73 T 13-10-2018 AMF_127 0f6cc2eb99a00e00621e7213913be685 291 Pfam PF02511 Thymidylate synthase complementing protein 34 232 1.2E-56 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 AMF_127 0f6cc2eb99a00e00621e7213913be685 291 SUPERFAMILY SSF69796 24 245 3.27E-68 T 13-10-2018 IPR036098 Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 AMF_055 0294c80b6d17e8e378847da035cea128 154 Pfam PF02470 MlaD protein 45 119 7.0E-19 T 13-10-2018 IPR003399 Mce/MlaD AMF_055 0294c80b6d17e8e378847da035cea128 154 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 8 149 4.5E-42 T 13-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 AMF_971 db21186c3f6e9acf1d017b4ad19db730 218 SUPERFAMILY SSF52317 1 213 2.2E-47 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_971 db21186c3f6e9acf1d017b4ad19db730 218 Gene3D G3DSA:3.40.50.880 1 216 1.4E-74 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like AMF_098 c2f423eb14fb7c56dba9e6b8e1170764 632 Pfam PF03429 Major surface protein 1B 1 607 0.0 T 13-10-2018 IPR005091 Major surface protein 1B AMF_191 b58375ae9e1948b7771bba5a0bc21cb2 217 SUPERFAMILY SSF56808 6 213 3.66E-70 T 13-10-2018 IPR023674 Ribosomal protein L1-like AMF_191 b58375ae9e1948b7771bba5a0bc21cb2 217 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 8 213 3.3E-77 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMF_191 b58375ae9e1948b7771bba5a0bc21cb2 217 Gene3D G3DSA:3.40.50.790 56 148 2.5E-74 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich AMF_191 b58375ae9e1948b7771bba5a0bc21cb2 217 Gene3D G3DSA:3.30.190.20 9 213 2.5E-74 T 13-10-2018 AMF_191 b58375ae9e1948b7771bba5a0bc21cb2 217 PIRSF PIRSF002155 2 216 5.6E-69 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_191 b58375ae9e1948b7771bba5a0bc21cb2 217 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 5 216 33.205 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMF_191 b58375ae9e1948b7771bba5a0bc21cb2 217 Pfam PF00687 Ribosomal protein L1p/L10e family 18 208 8.1E-45 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein AMF_191 b58375ae9e1948b7771bba5a0bc21cb2 217 ProSitePatterns PS01199 Ribosomal protein L1 signature. 110 128 - T 13-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_482 e17134ba64c30bcb86e71b304b805c59 143 Pfam PF03918 Cytochrome C biogenesis protein 35 135 7.0E-20 T 13-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family AMF_482 e17134ba64c30bcb86e71b304b805c59 143 Gene3D G3DSA:1.10.8.640 34 107 1.7E-16 T 13-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily AMF_086 443c1adac02c32f0fdc50c5a46715f6f 467 Gene3D G3DSA:3.20.20.70 15 467 2.9E-21 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_086 443c1adac02c32f0fdc50c5a46715f6f 467 Pfam PF03060 Nitronate monooxygenase 143 349 2.1E-8 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMF_086 443c1adac02c32f0fdc50c5a46715f6f 467 SUPERFAMILY SSF51412 17 311 4.4E-7 T 13-10-2018 AMF_370 1c44c367b3d93c8a6e850103c43dad85 220 Pfam PF01596 O-methyltransferase 36 218 1.1E-34 T 13-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 AMF_370 1c44c367b3d93c8a6e850103c43dad85 220 SUPERFAMILY SSF53335 41 218 1.82E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_370 1c44c367b3d93c8a6e850103c43dad85 220 Gene3D G3DSA:3.40.50.150 3 220 2.2E-55 T 13-10-2018 AMF_163 de01510362e1fa629d92226dd2982712 375 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 160 368 1.5E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMF_163 de01510362e1fa629d92226dd2982712 375 SUPERFAMILY SSF161098 118 360 1.31E-32 T 13-10-2018 IPR035906 MetI-like superfamily AMF_163 de01510362e1fa629d92226dd2982712 375 Gene3D G3DSA:1.10.3720.10 140 370 9.3E-36 T 13-10-2018 IPR035906 MetI-like superfamily AMF_163 de01510362e1fa629d92226dd2982712 375 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 79 368 1.1E-76 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AMF_784 50e684b9498a6a06a191cc33b3971655 325 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 317 8.0E-73 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMF_784 50e684b9498a6a06a191cc33b3971655 325 Pfam PF14572 Phosphoribosyl synthetase-associated domain 223 295 1.6E-15 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMF_784 50e684b9498a6a06a191cc33b3971655 325 SUPERFAMILY SSF53271 72 294 1.02E-37 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like AMF_784 50e684b9498a6a06a191cc33b3971655 325 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 132 1.1E-34 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMF_784 50e684b9498a6a06a191cc33b3971655 325 SMART SM01400 4 132 1.7E-38 T 13-10-2018 AMF_784 50e684b9498a6a06a191cc33b3971655 325 Gene3D G3DSA:3.40.50.2020 159 306 6.9E-88 T 13-10-2018 AMF_784 50e684b9498a6a06a191cc33b3971655 325 Gene3D G3DSA:3.40.50.2020 9 316 6.9E-88 T 13-10-2018 AMF_901 98d9127512f41cd9809b72aad65dc8c8 306 PIRSF PIRSF038992 28 305 4.7E-60 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMF_901 98d9127512f41cd9809b72aad65dc8c8 306 SMART SM01133 47 289 7.4E-46 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMF_901 98d9127512f41cd9809b72aad65dc8c8 306 Pfam PF01791 DeoC/LacD family aldolase 48 289 3.0E-31 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMF_901 98d9127512f41cd9809b72aad65dc8c8 306 SUPERFAMILY SSF51569 30 305 1.88E-63 T 13-10-2018 AMF_901 98d9127512f41cd9809b72aad65dc8c8 306 Gene3D G3DSA:3.20.20.70 30 306 3.2E-80 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_308 08c5bd0cd37431f2aba317f2e6c45321 946 Pfam PF12705 PD-(D/E)XK nuclease superfamily 692 920 1.0E-6 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type AMF_683 c3d47ed9a6455d88045e63c1591b7239 82 Pfam PF00253 Ribosomal protein S14p/S29e 28 81 1.5E-23 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_683 c3d47ed9a6455d88045e63c1591b7239 82 SUPERFAMILY SSF57716 3 82 5.63E-30 T 13-10-2018 AMF_683 c3d47ed9a6455d88045e63c1591b7239 82 Gene3D G3DSA:4.10.830.10 21 82 1.5E-21 T 13-10-2018 AMF_683 c3d47ed9a6455d88045e63c1591b7239 82 ProSitePatterns PS00527 Ribosomal protein S14 signature. 44 66 - T 13-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMF_433 82347f0a5a86db90ed92112f6d59a2f7 184 Pfam PF05135 Phage gp6-like head-tail connector protein 21 116 9.0E-16 T 13-10-2018 IPR021146 Phage gp6-like head-tail connector protein AMF_433 82347f0a5a86db90ed92112f6d59a2f7 184 TIGRFAM TIGR02215 phage_chp_gp8: phage conserved hypothetical protein, phiE125 gp8 family 10 168 9.5E-18 T 13-10-2018 IPR011738 Phage conserved hypothetical protein AMF_951 c387ef4ebb0b1273e757b2dfe47e8679 352 Pfam PF01617 Surface antigen 66 352 3.3E-22 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_249 5358ea6486d3cd265e02590cf93a835c 377 Gene3D G3DSA:1.10.10.10 296 374 6.2E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMF_249 5358ea6486d3cd265e02590cf93a835c 377 Pfam PF02481 DNA recombination-mediator protein A 75 282 9.3E-68 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AMF_249 5358ea6486d3cd265e02590cf93a835c 377 SUPERFAMILY SSF102405 85 291 2.87E-35 T 13-10-2018 AMF_249 5358ea6486d3cd265e02590cf93a835c 377 Gene3D G3DSA:3.40.50.450 2 293 2.4E-92 T 13-10-2018 AMF_249 5358ea6486d3cd265e02590cf93a835c 377 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 74 290 1.4E-63 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AMF_1029 64d2ad34ab08d743c85bde0079453f58 196 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 22 181 29.758 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMF_1029 64d2ad34ab08d743c85bde0079453f58 196 SUPERFAMILY SSF69765 21 182 3.4E-56 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMF_1029 64d2ad34ab08d743c85bde0079453f58 196 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 23 179 8.5E-54 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMF_1029 64d2ad34ab08d743c85bde0079453f58 196 Gene3D G3DSA:3.30.1330.50 20 188 4.5E-59 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMF_1029 64d2ad34ab08d743c85bde0079453f58 196 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 60 75 - T 13-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMF_1029 64d2ad34ab08d743c85bde0079453f58 196 Pfam PF02542 YgbB family 22 179 6.1E-54 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMF_553 b0ffbb2495fbca2d4ec15cff571840d6 200 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 161 2.5E-30 T 13-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_553 b0ffbb2495fbca2d4ec15cff571840d6 200 Gene3D G3DSA:1.20.120.1200 2 162 1.1E-36 T 13-10-2018 AMF_152 6b7e3df155ab8f03d345114526fe7777 261 Pfam PF03799 Cell division protein FtsQ 141 252 5.4E-12 T 13-10-2018 IPR005548 Cell division protein FtsQ/DivIB AMF_152 6b7e3df155ab8f03d345114526fe7777 261 Pfam PF08478 POTRA domain, FtsQ-type 69 137 1.8E-14 T 13-10-2018 IPR013685 POTRA domain, FtsQ-type AMF_987 7aae6d83f84ac08215fb2684da6cfbe2 266 SUPERFAMILY SSF53335 21 199 2.15E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_987 7aae6d83f84ac08215fb2684da6cfbe2 266 Gene3D G3DSA:3.40.50.150 23 203 3.6E-29 T 13-10-2018 AMF_987 7aae6d83f84ac08215fb2684da6cfbe2 266 Pfam PF08241 Methyltransferase domain 59 145 4.8E-18 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMF_303 979ff007b5f2784c00f5bffac580021c 449 Gene3D G3DSA:1.20.1250.20 25 429 1.5E-36 T 13-10-2018 AMF_303 979ff007b5f2784c00f5bffac580021c 449 Pfam PF07690 Major Facilitator Superfamily 73 361 1.4E-9 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMF_303 979ff007b5f2784c00f5bffac580021c 449 SUPERFAMILY SSF103473 27 427 3.4E-34 T 13-10-2018 IPR036259 MFS transporter superfamily AMF_603 80c97330a759ca95304c885dc6d83b9f 1376 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 674 868 2.2E-17 T 13-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 AMF_499 7ed982bffa6ca18c4074ef76083d103e 128 Gene3D G3DSA:2.60.15.10 2 124 1.9E-13 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_499 7ed982bffa6ca18c4074ef76083d103e 128 SUPERFAMILY SSF51344 3 84 6.54E-14 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_499 7ed982bffa6ca18c4074ef76083d103e 128 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 81 3.9E-14 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMF_851 59319f69e0ca17927b28115550e59f0a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 74 97 5.2E-11 T 13-10-2018 AMF_851 59319f69e0ca17927b28115550e59f0a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 191 214 5.2E-11 T 13-10-2018 AMF_851 59319f69e0ca17927b28115550e59f0a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 51 68 5.2E-11 T 13-10-2018 AMF_851 59319f69e0ca17927b28115550e59f0a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 99 117 5.2E-11 T 13-10-2018 AMF_851 59319f69e0ca17927b28115550e59f0a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 155 174 5.2E-11 T 13-10-2018 AMF_851 59319f69e0ca17927b28115550e59f0a 220 Pfam PF03379 CcmB protein 5 214 4.7E-18 T 13-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_774 74d77a87ec11fe62809734a555e15389 204 SUPERFAMILY SSF53098 13 190 7.59E-50 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily AMF_774 74d77a87ec11fe62809734a555e15389 204 Gene3D G3DSA:3.30.420.10 8 188 4.6E-42 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMF_774 74d77a87ec11fe62809734a555e15389 204 Pfam PF01612 3'-5' exonuclease 18 168 3.3E-38 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMF_774 74d77a87ec11fe62809734a555e15389 204 SMART SM00474 1 168 7.8E-35 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMF_054 c0edb31d11dbaa59f567fcc2819c5ccd 103 Pfam PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 18 91 9.8E-13 T 13-10-2018 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 Reactome: R-HSA-6799198 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 246 300 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 SUPERFAMILY SSF81442 12 520 2.35E-207 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 16 519 3.1E-210 T 13-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 15 40 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 427 448 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 314 335 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 132 144 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 62 85 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 90 114 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 164 182 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 193 212 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 290 305 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 244 265 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 377 396 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 PRINTS PR01165 Cytochrome c oxidase subunit I signature 349 367 1.9E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 24 467 2.8E-144 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_767 dabfb92d6593af998f5cb20bce681bbd 521 Gene3D G3DSA:1.20.210.10 13 521 1.9E-223 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMF_035 00d251a407f699595c95e3ca966aa942 445 Pfam PF00083 Sugar (and other) transporter 30 229 1.5E-17 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMF_035 00d251a407f699595c95e3ca966aa942 445 Pfam PF00083 Sugar (and other) transporter 241 431 5.5E-7 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMF_035 00d251a407f699595c95e3ca966aa942 445 Gene3D G3DSA:1.20.1250.20 24 439 3.5E-50 T 13-10-2018 AMF_035 00d251a407f699595c95e3ca966aa942 445 SUPERFAMILY SSF103473 26 437 6.67E-48 T 13-10-2018 IPR036259 MFS transporter superfamily AMF_889 262e323b740216723fc537b09e54c881 83 Pfam PF07330 Protein of unknown function (DUF1467) 3 72 4.8E-14 T 13-10-2018 IPR009935 Protein of unknown function DUF1467 AMF_890 6e29bb68bf9b88e7699c0dce5a4a4e75 412 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 226 279 1.5E-6 T 13-10-2018 AMF_890 6e29bb68bf9b88e7699c0dce5a4a4e75 412 Gene3D G3DSA:1.25.40.10 103 376 9.6E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMF_890 6e29bb68bf9b88e7699c0dce5a4a4e75 412 SUPERFAMILY SSF48452 226 373 5.55E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMF_162 aed98292c81f84ad2d782911873efe8c 275 Gene3D G3DSA:3.30.590.10 3 273 9.8E-50 T 13-10-2018 AMF_162 aed98292c81f84ad2d782911873efe8c 275 Pfam PF00120 Glutamine synthetase, catalytic domain 58 268 1.0E-39 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_162 aed98292c81f84ad2d782911873efe8c 275 SUPERFAMILY SSF55931 7 268 1.67E-56 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMF_162 aed98292c81f84ad2d782911873efe8c 275 SMART SM01230 1 229 3.6E-28 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_878 9ca6276defa1003de11799c18ca718d8 405 Pfam PF01617 Surface antigen 61 404 9.9E-40 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_878 9ca6276defa1003de11799c18ca718d8 405 Gene3D G3DSA:2.40.160.20 238 379 3.3E-6 T 13-10-2018 AMF_878 9ca6276defa1003de11799c18ca718d8 405 SUPERFAMILY SSF56925 62 367 5.23E-10 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_374 2fa63ac5a507313d2eeb4238f46a7aa7 183 Gene3D G3DSA:2.30.30.220 21 142 6.4E-39 T 13-10-2018 IPR036760 SspB-like superfamily AMF_374 2fa63ac5a507313d2eeb4238f46a7aa7 183 Pfam PF04386 Stringent starvation protein B 37 142 1.3E-24 T 13-10-2018 IPR007481 Stringent starvation protein B AMF_374 2fa63ac5a507313d2eeb4238f46a7aa7 183 SUPERFAMILY SSF101738 28 141 4.9E-38 T 13-10-2018 IPR036760 SspB-like superfamily AMF_920 5d661e145ab27f06d8959c829f98b1d6 402 Pfam PF01617 Surface antigen 31 400 7.1E-32 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_920 5d661e145ab27f06d8959c829f98b1d6 402 SUPERFAMILY SSF56925 284 358 1.52E-8 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_920 5d661e145ab27f06d8959c829f98b1d6 402 Gene3D G3DSA:2.40.160.20 247 390 7.5E-7 T 13-10-2018 AMF_023 72e2e9d8303244e3531d6c3fecf4b7af 130 Pfam PF04956 TrbC/VIRB2 family 10 102 1.8E-15 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_049 302866bffbef38088b8e60110afaf826 128 Pfam PF04956 TrbC/VIRB2 family 8 100 1.3E-15 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_966 2a6d47a801a39455437f74a90aa7b0ad 102 Gene3D G3DSA:3.30.1310.10 4 100 6.0E-12 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AMF_966 2a6d47a801a39455437f74a90aa7b0ad 102 Pfam PF02575 YbaB/EbfC DNA-binding family 13 99 1.4E-13 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMF_966 2a6d47a801a39455437f74a90aa7b0ad 102 SUPERFAMILY SSF82607 6 99 1.57E-15 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AMF_759 f2df0b1179b5a438b1dd7d12811dd8f4 210 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 32 208 38.435 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMF_759 f2df0b1179b5a438b1dd7d12811dd8f4 210 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 33 208 2.7E-78 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMF_759 f2df0b1179b5a438b1dd7d12811dd8f4 210 Pfam PF00227 Proteasome subunit 32 207 5.2E-23 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 AMF_759 f2df0b1179b5a438b1dd7d12811dd8f4 210 SUPERFAMILY SSF56235 29 208 1.79E-53 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_759 f2df0b1179b5a438b1dd7d12811dd8f4 210 Gene3D G3DSA:3.60.20.10 28 209 4.2E-66 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_759 f2df0b1179b5a438b1dd7d12811dd8f4 210 PIRSF PIRSF039093 26 210 6.9E-82 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMF_1027 bf9d7a97e9d68cc72c261c8eaea45853 473 PIRSF PIRSF004919 14 472 2.3E-120 T 13-10-2018 IPR025502 TldD AMF_1027 bf9d7a97e9d68cc72c261c8eaea45853 473 Pfam PF01523 Putative modulator of DNA gyrase 34 323 2.2E-54 T 13-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AMF_1027 bf9d7a97e9d68cc72c261c8eaea45853 473 SUPERFAMILY SSF111283 21 469 2.35E-110 T 13-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 AMF_893 4df5bf54ce4dde78ccdedc9aab7ce8f8 408 Pfam PF02687 FtsX-like permease family 295 401 2.1E-6 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMF_893 4df5bf54ce4dde78ccdedc9aab7ce8f8 408 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 9 408 2.2E-116 T 13-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 AMF_893 4df5bf54ce4dde78ccdedc9aab7ce8f8 408 Pfam PF12704 MacB-like periplasmic core domain 30 236 4.3E-18 T 13-10-2018 IPR025857 MacB-like periplasmic core domain AMF_067 aa01a7dca5611c362eeaf067edb8befc 106 Gene3D G3DSA:3.30.160.190 11 84 7.3E-27 T 13-10-2018 IPR038532 NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_067 aa01a7dca5611c362eeaf067edb8befc 106 Pfam PF04800 ETC complex I subunit conserved region 12 104 5.4E-30 T 13-10-2018 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 AMF_176 5f306848cca3d1d24dec4d0ae792bee2 218 Pfam PF08511 COQ9 122 197 6.5E-23 T 13-10-2018 IPR013718 COQ9 Reactome: R-HSA-2142789 AMF_176 5f306848cca3d1d24dec4d0ae792bee2 218 Gene3D G3DSA:1.10.357.10 11 194 4.6E-13 T 13-10-2018 AMF_176 5f306848cca3d1d24dec4d0ae792bee2 218 TIGRFAM TIGR02396 diverge_rpsU: rpsU-divergently transcribed protein 18 201 2.1E-39 T 13-10-2018 IPR012762 Ubiquinone biosynthesis protein COQ9 GO:0006744 Reactome: R-HSA-2142789 AMF_318 72d6459d033848c833eac8586f7bd5b6 255 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 19 248 9.9E-86 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMF_318 72d6459d033848c833eac8586f7bd5b6 255 SUPERFAMILY SSF63892 18 251 8.76E-85 T 13-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMF_318 72d6459d033848c833eac8586f7bd5b6 255 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 253 92.062 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMF_318 72d6459d033848c833eac8586f7bd5b6 255 Gene3D G3DSA:3.20.20.70 12 255 8.9E-90 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_318 72d6459d033848c833eac8586f7bd5b6 255 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 20 249 1.4E-72 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMF_963 c74bc1456f1328d8a29e8ecab6b45c2f 151 SUPERFAMILY SSF52540 31 123 2.88E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_963 c74bc1456f1328d8a29e8ecab6b45c2f 151 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 22 136 1.7E-25 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMF_963 c74bc1456f1328d8a29e8ecab6b45c2f 151 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 19 144 5.3E-25 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMF_963 c74bc1456f1328d8a29e8ecab6b45c2f 151 Gene3D G3DSA:3.40.50.300 14 151 2.0E-27 T 13-10-2018 AMF_865 8393fc4182aaa9f3d08768640537562a 134 Pfam PF07306 Protein of unknown function (DUF1455) 5 134 1.7E-85 T 13-10-2018 IPR009919 Protein of unknown function DUF1455 AMF_986 1d48b5c3b0dc75be1a71cb87ac1a8fd9 419 Pfam PF04860 Phage portal protein 69 404 1.8E-85 T 13-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein AMF_986 1d48b5c3b0dc75be1a71cb87ac1a8fd9 419 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 61 411 3.0E-66 T 13-10-2018 IPR006427 Phage portal protein, HK97 AMF_128 45b1760880b38b16a55d46ede8f49c5f 393 Pfam PF07690 Major Facilitator Superfamily 13 355 3.6E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMF_128 45b1760880b38b16a55d46ede8f49c5f 393 Gene3D G3DSA:1.20.1720.10 7 387 4.1E-66 T 13-10-2018 AMF_128 45b1760880b38b16a55d46ede8f49c5f 393 SUPERFAMILY SSF103473 6 389 1.1E-52 T 13-10-2018 IPR036259 MFS transporter superfamily AMF_1013 c94597b19d4ecdeb4e8a3e84492972f0 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 13 213 3.8E-13 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMF_1013 c94597b19d4ecdeb4e8a3e84492972f0 326 Gene3D G3DSA:3.40.50.720 3 259 1.5E-39 T 13-10-2018 AMF_1013 c94597b19d4ecdeb4e8a3e84492972f0 326 SUPERFAMILY SSF51735 10 260 3.46E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily AMF_221 150f1cca3c7a422e6e204b693674ff56 450 Pfam PF01594 AI-2E family transporter 101 434 2.3E-45 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like AMF_845 09a2f725ae09baec89346d09bfc4b8e1 523 Pfam PF02386 Cation transport protein 89 295 5.4E-25 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AMF_845 09a2f725ae09baec89346d09bfc4b8e1 523 Pfam PF02386 Cation transport protein 329 498 2.0E-14 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AMF_319 39e1eafb3fb664bbc97623012e1a0204 296 Pfam PF13177 DNA polymerase III, delta subunit 28 151 4.0E-21 T 13-10-2018 AMF_319 39e1eafb3fb664bbc97623012e1a0204 296 Gene3D G3DSA:3.40.50.300 14 146 2.5E-31 T 13-10-2018 AMF_319 39e1eafb3fb664bbc97623012e1a0204 296 SUPERFAMILY SSF52540 22 168 1.11E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_247 ef81d870980bbac73e1e675c8d5664b9 230 Pfam PF01618 MotA/TolQ/ExbB proton channel family 94 216 3.2E-33 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMF_561 eab23d520ec8534d773ba3fd5eef6af7 449 Pfam PF02646 RmuC family 141 440 2.6E-92 T 13-10-2018 IPR003798 DNA recombination RmuC AMF_750 370f618ace927f4f485e0b90d4991834 217 Gene3D G3DSA:1.10.287.130 8 77 1.1E-7 T 13-10-2018 AMF_750 370f618ace927f4f485e0b90d4991834 217 Pfam PF10090 Histidine phosphotransferase C-terminal domain 81 208 1.1E-22 T 13-10-2018 IPR018762 Histidine phosphotransferase ChpT, C-terminal AMF_750 370f618ace927f4f485e0b90d4991834 217 Gene3D G3DSA:3.30.565.10 78 216 2.2E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMF_950 f56beade53efc061f1278805ceebb15d 285 SUPERFAMILY SSF56925 106 285 3.92E-11 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_950 f56beade53efc061f1278805ceebb15d 285 Pfam PF01617 Surface antigen 45 285 5.4E-34 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_950 f56beade53efc061f1278805ceebb15d 285 Gene3D G3DSA:2.40.160.20 101 253 1.7E-7 T 13-10-2018 AMF_154 9eb79d2537f5a0d3a86188840f17f5ea 130 Pfam PF04956 TrbC/VIRB2 family 23 106 6.9E-15 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_072 ea674e31d3fd6403d987b54052272e01 313 SUPERFAMILY SSF53474 38 295 4.19E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AMF_072 ea674e31d3fd6403d987b54052272e01 313 Pfam PF00561 alpha/beta hydrolase fold 57 178 2.5E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMF_072 ea674e31d3fd6403d987b54052272e01 313 Gene3D G3DSA:3.40.50.1820 18 310 1.9E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AMF_149 fcd1d35f229b29520e5b163703c4a655 195 Pfam PF04972 BON domain 46 111 2.0E-14 T 13-10-2018 IPR007055 BON domain AMF_149 fcd1d35f229b29520e5b163703c4a655 195 Pfam PF04972 BON domain 123 187 5.2E-10 T 13-10-2018 IPR007055 BON domain AMF_149 fcd1d35f229b29520e5b163703c4a655 195 SMART SM00749 51 114 0.089 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria AMF_149 fcd1d35f229b29520e5b163703c4a655 195 SMART SM00749 127 190 1.8E-10 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria AMF_870 4c541056c27f95e83912259c7fe2b7c4 131 Pfam PF04956 TrbC/VIRB2 family 20 104 8.0E-15 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_450 cfae58e420dea28c2cc4abd774ed1273 71 SUPERFAMILY SSF52540 7 68 3.61E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_450 cfae58e420dea28c2cc4abd774ed1273 71 Gene3D G3DSA:3.90.170.10 3 71 4.3E-18 T 13-10-2018 AMF_450 cfae58e420dea28c2cc4abd774ed1273 71 Pfam PF00709 Adenylosuccinate synthetase 10 67 9.5E-16 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMF_102 d0f6fcc32a9e1de1caccbdfd28cc52b4 251 Gene3D G3DSA:3.40.30.10 73 248 1.4E-33 T 13-10-2018 AMF_102 d0f6fcc32a9e1de1caccbdfd28cc52b4 251 SUPERFAMILY SSF52833 70 239 2.55E-32 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_102 d0f6fcc32a9e1de1caccbdfd28cc52b4 251 Pfam PF13462 Thioredoxin 83 240 1.1E-17 T 13-10-2018 IPR012336 Thioredoxin-like fold AMF_755 022d9e8410dfb7b5967055cfe1b4f6b1 136 Pfam PF04956 TrbC/VIRB2 family 29 109 5.5E-14 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_089 b183b72fab0999fea02c1e2ae4612d71 721 Pfam PF03429 Major surface protein 1B 1 721 0.0 T 13-10-2018 IPR005091 Major surface protein 1B AMF_135 68627f4b95e63aa9c6fa54bd47120053 756 Pfam PF03429 Major surface protein 1B 1 756 0.0 T 13-10-2018 IPR005091 Major surface protein 1B AMF_085 7e93ed089b31799834aebb9d4958eefd 440 Gene3D G3DSA:2.70.70.10 275 408 1.3E-65 T 13-10-2018 IPR011055 Duplicated hybrid motif AMF_085 7e93ed089b31799834aebb9d4958eefd 440 Pfam PF01551 Peptidase family M23 306 402 4.1E-31 T 13-10-2018 IPR016047 Peptidase M23 AMF_085 7e93ed089b31799834aebb9d4958eefd 440 SUPERFAMILY SSF51261 160 404 7.32E-58 T 13-10-2018 IPR011055 Duplicated hybrid motif AMF_085 7e93ed089b31799834aebb9d4958eefd 440 Gene3D G3DSA:3.10.450.350 173 410 1.3E-65 T 13-10-2018 AMF_431 f1d610e41d3b901b475ed47f51b9b06d 135 Pfam PF06199 Phage tail tube protein 3 126 6.4E-10 T 13-10-2018 IPR011855 Phage major tail protein TP901-1 AMF_842 a2247730085ea83823d64cff10014366 166 Pfam PF02326 Plant ATP synthase F0 5 57 1.3E-4 T 13-10-2018 IPR003319 ATP synthase YMF19-like, N-terminal AMF_029 bfe8c7da97220c0dd8e34b16ba6ffe2b 146 Pfam PF10947 Protein of unknown function (DUF2628) 36 112 4.2E-5 T 13-10-2018 IPR024399 Protein of unknown function DUF2628 AMF_323 dec746ed022827b1c875eb14460cffca 221 SUPERFAMILY SSF160443 131 216 7.06E-13 T 13-10-2018 IPR036063 Smr domain superfamily AMF_323 dec746ed022827b1c875eb14460cffca 221 Gene3D G3DSA:3.30.1370.110 101 221 5.6E-31 T 13-10-2018 AMF_323 dec746ed022827b1c875eb14460cffca 221 Pfam PF01713 Smr domain 133 216 1.8E-17 T 13-10-2018 IPR002625 Smr domain AMF_491 803a0fda3842137ecb2a6eb2ce2d3ff3 234 Gene3D G3DSA:3.40.50.1820 2 228 1.2E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AMF_491 803a0fda3842137ecb2a6eb2ce2d3ff3 234 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 46 154 1.9E-9 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMF_491 803a0fda3842137ecb2a6eb2ce2d3ff3 234 SUPERFAMILY SSF53474 3 211 1.58E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold AMF_357 6ce7a01ec724cca49113c62e12a3674a 199 Gene3D G3DSA:3.40.30.10 43 198 2.5E-24 T 13-10-2018 AMF_357 6ce7a01ec724cca49113c62e12a3674a 199 Pfam PF00578 AhpC/TSA family 63 177 5.7E-10 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMF_357 6ce7a01ec724cca49113c62e12a3674a 199 SUPERFAMILY SSF52833 20 187 1.01E-24 T 13-10-2018 IPR036249 Thioredoxin-like superfamily AMF_144 1301f58857596b9c2a5fcbd91ca6d0f7 507 Pfam PF00361 Proton-conducting membrane transporter 141 440 5.9E-49 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_144 1301f58857596b9c2a5fcbd91ca6d0f7 507 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 250 276 4.9E-16 T 13-10-2018 AMF_144 1301f58857596b9c2a5fcbd91ca6d0f7 507 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 228 249 4.9E-16 T 13-10-2018 AMF_144 1301f58857596b9c2a5fcbd91ca6d0f7 507 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 85 110 4.9E-16 T 13-10-2018 AMF_144 1301f58857596b9c2a5fcbd91ca6d0f7 507 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 435 454 4.9E-16 T 13-10-2018 AMF_224 0f4d5cca9fbda4391a02d374752d11ba 382 SUPERFAMILY SSF55785 251 320 7.42E-6 T 13-10-2018 IPR035965 PAS domain superfamily AMF_532 4528ce4ca56303f44a6ab92c9fb120e3 125 Pfam PF04956 TrbC/VIRB2 family 9 97 6.9E-16 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_351 0f59e5230edaaf0b57f2ba0cf3db13a1 160 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 2 150 1.5E-18 T 13-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 AMF_880 f60d7f587cca74a873130d1abb63ddd4 379 Pfam PF01617 Surface antigen 77 379 3.5E-29 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_880 f60d7f587cca74a873130d1abb63ddd4 379 SUPERFAMILY SSF56925 109 336 2.04E-10 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMF_880 f60d7f587cca74a873130d1abb63ddd4 379 Gene3D G3DSA:2.40.160.20 49 343 4.6E-8 T 13-10-2018 AMF_964 be6022d4db83c112f07446aadd046693 233 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 18 229 7.6E-54 T 13-10-2018 IPR006214 Bax inhibitor 1-related AMF_090 bd8f69e73de22f58f62449da2e18e9fb 398 Pfam PF03429 Major surface protein 1B 65 123 4.7E-28 T 13-10-2018 IPR005091 Major surface protein 1B AMF_090 bd8f69e73de22f58f62449da2e18e9fb 398 Pfam PF03429 Major surface protein 1B 16 68 8.2E-24 T 13-10-2018 IPR005091 Major surface protein 1B AMF_090 bd8f69e73de22f58f62449da2e18e9fb 398 Pfam PF03429 Major surface protein 1B 121 382 1.3E-165 T 13-10-2018 IPR005091 Major surface protein 1B AMF_873 40fb139b0cf44bd985b34ef00509411c 68 Pfam PF04956 TrbC/VIRB2 family 1 42 6.9E-8 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_800 7444936351bcb3c8885ff06f2a64d8f0 89 Pfam PF04956 TrbC/VIRB2 family 5 72 1.7E-7 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_801 5ecaef41f4c1dc22802e72e7d44a9b93 129 Pfam PF04956 TrbC/VIRB2 family 7 102 1.6E-15 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_359 2b4fa424a64f709451bb334f4bfc056f 94 Pfam PF11020 Domain of unknown function (DUF2610) 4 83 3.5E-41 T 13-10-2018 IPR021277 Protein of unknown function DUF2610 AMF_021 9b2ecb67a94792439f65d8f7cd5c8ec2 906 Pfam PF13502 AsmA-like C-terminal region 677 848 8.3E-10 T 13-10-2018 IPR032712 AsmA-like, C-terminal AMF_057 334f37efd0b66139ed29e887a1596f94 135 Pfam PF04956 TrbC/VIRB2 family 13 105 1.4E-15 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_922 8ce4517c1784026545ea6a0c95fde312 422 Pfam PF01617 Surface antigen 54 420 6.9E-23 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_118 4f6b0bd30a8ea4bf661e33d9469fb046 195 Pfam PF02674 Colicin V production protein 3 156 2.4E-30 T 13-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 AMF_930 bc113644eb7d3b180c22ba15994b5c93 285 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 22 268 4.2E-65 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMF_930 bc113644eb7d3b180c22ba15994b5c93 285 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 19 274 17.381 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMF_930 bc113644eb7d3b180c22ba15994b5c93 285 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 13 274 7.1E-63 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMF_604 d0891b3789db04c1b3a737644f00786a 1021 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 653 848 5.7E-18 T 13-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 AMF_637 642ed90c27dd731b70d065ddd61aaf3c 84 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 28 79 6.7E-12 T 13-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 AMF_918 4dfb9335c74dd0cb880cf1e84dc669f4 153 Pfam PF01617 Surface antigen 32 127 4.5E-10 T 13-10-2018 IPR002566 Surface antigen msp4 AMF_549 a613ed2ad47840593126a9b0d564041f 481 Pfam PF00361 Proton-conducting membrane transporter 121 403 7.4E-52 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMF_549 a613ed2ad47840593126a9b0d564041f 481 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 4 463 14.267 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMF_284 a3542d0a5e91f1b1601fb355e390f411 180 Pfam PF11412 Disulphide bond corrector protein DsbC 49 156 1.9E-10 T 13-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AMF_633 427869b59e1f0f42eb320a5f01578393 108 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 11 104 2.8E-19 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like AMF_472 e71a106ee436efbfb6a82c29734585eb 177 Gene3D G3DSA:2.60.40.1880 34 176 5.0E-6 T 13-10-2018 IPR038696 Invasion protein B superfamily AMF_200 b54f07f8a3c7c1b0e2d3fedc445d1f50 173 Pfam PF01899 Na+/H+ ion antiporter subunit 14 147 1.5E-17 T 13-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021