locus-tag class description AM001 PF00731 AIR carboxylase AM005 PF01098 Cell cycle protein AM006 PF00216 Bacterial DNA-binding protein AM007 PF13411 MerR HTH family regulatory protein AM010 PF01225 Mur ligase family, catalytic domain AM010 PF02875 Mur ligase family, glutamate ligase domain AM010 PF08245 Mur ligase middle domain AM011 PF01225 Mur ligase family, catalytic domain AM011 PF02875 Mur ligase family, glutamate ligase domain AM011 PF08245 Mur ligase middle domain AM012 PF00579 tRNA synthetases class I (W and Y) AM013 PF01025 GrpE AM015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM015 PF01872 RibD C-terminal domain AM018 PF06418 CTP synthase N-terminus AM018 PF00117 Glutamine amidotransferase class-I AM021 PF02899 Phage integrase, N-terminal SAM-like domain AM021 PF00589 Phage integrase family AM023 PF00005 ABC transporter AM024 PF03949 Malic enzyme, NAD binding domain AM024 PF00390 Malic enzyme, N-terminal domain AM024 PF01515 Phosphate acetyl/butaryl transferase AM026 PF00361 Proton-conducting membrane transporter AM037 PF05690 Thiazole biosynthesis protein ThiG AM039 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM041 PF13145 PPIC-type PPIASE domain AM051 PF07497 Rho termination factor, RNA-binding domain AM051 PF07498 Rho termination factor, N-terminal domain AM051 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM053 PF01632 Ribosomal protein L35 AM054 PF00453 Ribosomal protein L20 AM055 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AM055 PF01409 tRNA synthetases class II core domain (F) AM058 PF00132 Bacterial transferase hexapeptide (six repeats) AM058 PF14602 Hexapeptide repeat of succinyl-transferase AM058 PF12804 MobA-like NTP transferase domain AM059 PF00886 Ribosomal protein S16 AM060 PF08946 Osmosensory transporter coiled coil AM060 PF00083 Sugar (and other) transporter AM070 PF03966 Trm112p-like protein AM073 PF03477 ATP cone domain AM075 PF01617 Surface antigen AM085 PF00154 recA bacterial DNA recombination protein AM087 PF00156 Phosphoribosyl transferase domain AM088 PF00899 ThiF family AM090 PF01617 Surface antigen AM096 PF00085 Thioredoxin AM1000 PF01209 ubiE/COQ5 methyltransferase family AM1001 PF08264 Anticodon-binding domain of tRNA AM1001 PF09334 tRNA synthetases class I (M) AM1005 PF00696 Amino acid kinase family AM1005 PF13840 ACT domain AM1007 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AM1007 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AM1008 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM1009 PF01040 UbiA prenyltransferase family AM101 PF00676 Dehydrogenase E1 component AM1010 PF13525 Outer membrane lipoprotein AM1011 PF02844 Phosphoribosylglycinamide synthetase, N domain AM1011 PF02843 Phosphoribosylglycinamide synthetase, C domain AM1011 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AM1012 PF02699 Preprotein translocase subunit AM1013 PF01380 SIS domain AM1014 PF02767 DNA polymerase III beta subunit, central domain AM1014 PF02768 DNA polymerase III beta subunit, C-terminal domain AM1014 PF00712 DNA polymerase III beta subunit, N-terminal domain AM1016 PF00072 Response regulator receiver domain AM1016 PF00486 Transcriptional regulatory protein, C terminal AM1020 PF00719 Inorganic pyrophosphatase AM1022 PF00380 Ribosomal protein S9/S16 AM1023 PF00572 Ribosomal protein L13 AM1024 PF02321 Outer membrane efflux protein AM1027 PF10609 NUBPL iron-transfer P-loop NTPase AM1028 PF14572 Phosphoribosyl synthetase-associated domain AM1028 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AM1030 PF02686 Glu-tRNAGln amidotransferase C subunit AM1032 PF00330 Aconitase family (aconitate hydratase) AM1032 PF00694 Aconitase C-terminal domain AM1035 PF04379 ApaG domain AM1036 PF02222 ATP-grasp domain AM1036 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AM105 PF00478 IMP dehydrogenase / GMP reductase domain AM105 PF00571 CBS domain AM106 PF01513 ATP-NAD kinase AM1064 PF01145 SPFH domain / Band 7 family AM1064 PF12221 Bacterial membrane protein N terminal AM1065 PF01145 SPFH domain / Band 7 family AM1066 PF13180 PDZ domain AM1069 PF00035 Double-stranded RNA binding motif AM1069 PF14622 Ribonuclease-III-like AM1070 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AM1080 PF00675 Insulinase (Peptidase family M16) AM1080 PF05193 Peptidase M16 inactive domain AM1081 PF01252 Signal peptidase (SPase) II AM1082 PF01687 Riboflavin kinase AM1082 PF06574 FAD synthetase AM1083 PF00462 Glutaredoxin AM1084 PF05175 Methyltransferase small domain AM1084 PF17827 PrmC N-terminal domain AM1086 PF00557 Metallopeptidase family M24 AM1087 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM1087 PF00364 Biotin-requiring enzyme AM1087 PF02817 e3 binding domain AM1088 PF00132 Bacterial transferase hexapeptide (six repeats) AM1089 PF02569 Pantoate-beta-alanine ligase AM1091 PF07943 Penicillin-binding protein 5, C-terminal domain AM1091 PF00768 D-alanyl-D-alanine carboxypeptidase AM1094 PF02163 Peptidase family M50 AM1094 PF17820 PDZ domain AM1096 PF07244 Surface antigen variable number repeat AM1096 PF01103 Surface antigen AM1098 PF07977 FabA-like domain AM1099 PF02142 MGS-like domain AM1099 PF01808 AICARFT/IMPCHase bienzyme AM110 PF00698 Acyl transferase domain AM1100 PF01066 CDP-alcohol phosphatidyltransferase AM1103 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM1104 PF01464 Transglycosylase SLT domain AM1105 PF02104 SURF1 family AM1109 PF13685 Iron-containing alcohol dehydrogenase AM111 PF02223 Thymidylate kinase AM1110 PF00119 ATP synthase A chain AM1112 PF00137 ATP synthase subunit C AM1115 PF02491 SHS2 domain inserted in FTSA AM1116 PF02386 Cation transport protein AM1117 PF01171 PP-loop family AM1119 PF06480 FtsH Extracellular AM1119 PF01434 Peptidase family M41 AM1119 PF17862 AAA+ lid domain AM1119 PF00004 ATPase family associated with various cellular activities (AAA) AM1120 PF07516 SecA Wing and Scaffold domain AM1120 PF02810 SEC-C motif AM1120 PF01043 SecA preprotein cross-linking domain AM1120 PF07517 SecA DEAD-like domain AM1123 PF01545 Cation efflux family AM1126 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM1129 PF02881 SRP54-type protein, helical bundle domain AM1129 PF00448 SRP54-type protein, GTPase domain AM1131 PF00180 Isocitrate/isopropylmalate dehydrogenase AM1131 PF18324 Hypothetical protein TT1725 AM1133 PF17768 RecJ OB domain AM1133 PF02272 DHHA1 domain AM1133 PF01368 DHH family AM1133 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AM1136 PF13735 tRNA nucleotidyltransferase domain 2 putative AM1136 PF12627 Probable RNA and SrmB- binding site of polymerase A AM1136 PF01743 Poly A polymerase head domain AM1137 PF00334 Nucleoside diphosphate kinase AM1138 PF01381 Helix-turn-helix AM114 PF02556 Preprotein translocase subunit SecB AM1144 PF01617 Surface antigen AM116 PF13462 Thioredoxin AM1169 PF01578 Cytochrome C assembly protein AM1169 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AM117 PF00675 Insulinase (Peptidase family M16) AM117 PF05193 Peptidase M16 inactive domain AM1170 PF08264 Anticodon-binding domain of tRNA AM1170 PF00133 tRNA synthetases class I (I, L, M and V) AM1171 PF01668 SmpB protein AM1172 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM1172 PF00925 GTP cyclohydrolase II AM1173 PF03449 Transcription elongation factor, N-terminal AM1173 PF01272 Transcription elongation factor, GreA/GreB, C-term AM1174 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM1174 PF00306 ATP synthase alpha/beta chain, C terminal domain AM1174 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM1175 PF00213 ATP synthase delta (OSCP) subunit AM118 PF04225 Opacity-associated protein A LysM-like domain AM118 PF01551 Peptidase family M23 AM1183 PF02687 FtsX-like permease family AM1183 PF12704 MacB-like periplasmic core domain AM1187 PF00285 Citrate synthase, C-terminal domain AM1188 PF00958 GMP synthase C terminal domain AM1188 PF00117 Glutamine amidotransferase class-I AM1192 PF02817 e3 binding domain AM1192 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM1192 PF00364 Biotin-requiring enzyme AM1194 PF01791 DeoC/LacD family aldolase AM1196 PF03717 Penicillin-binding Protein dimerisation domain AM1196 PF00905 Penicillin binding protein transpeptidase domain AM1197 PF07549 SecD/SecF GG Motif AM1197 PF02355 Protein export membrane protein AM120 PF00677 Lumazine binding domain AM1200 PF02021 Uncharacterised protein family UPF0102 AM1202 PF00155 Aminotransferase class I and II AM1205 PF00579 tRNA synthetases class I (W and Y) AM1206 PF03951 Glutamine synthetase, beta-Grasp domain AM1206 PF00120 Glutamine synthetase, catalytic domain AM1207 PF00953 Glycosyl transferase family 4 AM1207 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AM1208 PF00348 Polyprenyl synthetase AM1210 PF00005 ABC transporter AM1212 PF02405 Permease MlaE AM1213 PF00834 Ribulose-phosphate 3 epimerase family AM1214 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM1214 PF00476 DNA polymerase family A AM1214 PF01367 5'-3' exonuclease, C-terminal SAM fold AM1217 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM1217 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM1218 PF02463 RecF/RecN/SMC N terminal domain AM1229 PF03023 Lipid II flippase MurJ AM1231 PF01790 Prolipoprotein diacylglyceryl transferase AM1233 PF01649 Ribosomal protein S20 AM1236 PF01327 Polypeptide deformylase AM1237 PF03167 Uracil DNA glycosylase superfamily AM1243 PF00271 Helicase conserved C-terminal domain AM1243 PF04851 Type III restriction enzyme, res subunit AM1243 PF02151 UvrB/uvrC motif AM1243 PF12344 Ultra-violet resistance protein B AM1243 PF17757 UvrB interaction domain AM1245 PF02355 Protein export membrane protein AM125 PF17757 UvrB interaction domain AM125 PF00270 DEAD/DEAH box helicase AM125 PF02559 CarD-like/TRCF domain AM125 PF03461 TRCF domain AM125 PF00271 Helicase conserved C-terminal domain AM1254 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AM126 PF00075 RNase H AM1261 PF00091 Tubulin/FtsZ family, GTPase domain AM1261 PF12327 FtsZ family, C-terminal domain AM1264 PF02130 Uncharacterized protein family UPF0054 AM1266 PF13614 AAA domain AM1267 PF02195 ParB-like nuclease domain AM1267 PF17762 HTH domain found in ParB protein AM1269 PF01782 RimM N-terminal domain AM1269 PF05239 PRC-barrel domain AM1270 PF01746 tRNA (Guanine-1)-methyltransferase AM1271 PF01245 Ribosomal protein L19 AM1272 PF00994 Probable molybdopterin binding domain AM1272 PF02464 Competence-damaged protein AM1272 PF18146 Damage-inducible protein CinA KH domain AM1273 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM1273 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM1273 PF03129 Anticodon binding domain AM1274 PF00707 Translation initiation factor IF-3, C-terminal domain AM1274 PF05198 Translation initiation factor IF-3, N-terminal domain AM1275 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AM1276 PF01027 Inhibitor of apoptosis-promoting Bax1 AM1277 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM1277 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM1278 PF02575 YbaB/EbfC DNA-binding family AM128 PF00696 Amino acid kinase family AM1280 PF12170 DNA polymerase III tau subunit V interacting with alpha AM1280 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AM1280 PF12169 DNA polymerase III subunits gamma and tau domain III AM1283 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM1283 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM1287 PF01098 Cell cycle protein AM1288 PF02772 S-adenosylmethionine synthetase, central domain AM1288 PF02773 S-adenosylmethionine synthetase, C-terminal domain AM1288 PF00438 S-adenosylmethionine synthetase, N-terminal domain AM1289 PF01494 FAD binding domain AM1294 PF02091 Glycyl-tRNA synthetase alpha subunit AM1295 PF02092 Glycyl-tRNA synthetase beta subunit AM1295 PF05746 DALR anticodon binding domain AM1296 PF01556 DnaJ C terminal domain AM1296 PF00684 DnaJ central domain AM1296 PF00226 DnaJ domain AM1297 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AM1297 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AM1298 PF02660 Glycerol-3-phosphate acyltransferase AM1299 PF02075 Crossover junction endodeoxyribonuclease RuvC AM130 PF01765 Ribosome recycling factor AM1300 PF00510 Cytochrome c oxidase subunit III AM1301 PF01208 Uroporphyrinogen decarboxylase (URO-D) AM1303 PF03471 Transporter associated domain AM1303 PF00571 CBS domain AM1305 PF04860 Phage portal protein AM1307 PF02445 Quinolinate synthetase A protein AM1309 PF00037 4Fe-4S binding domain AM1309 PF11953 Domain of unknown function (DUF3470) AM131 PF01255 Putative undecaprenyl diphosphate synthase AM1310 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AM1310 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AM1311 PF00707 Translation initiation factor IF-3, C-terminal domain AM1311 PF05198 Translation initiation factor IF-3, N-terminal domain AM1312 PF02534 Type IV secretory system Conjugative DNA transfer AM1313 PF00437 Type II/IV secretion system protein AM1314 PF03743 Bacterial conjugation TrbI-like protein AM1317 PF00925 GTP cyclohydrolase II AM1319 PF01209 ubiE/COQ5 methyltransferase family AM1323 PF01678 Diaminopimelate epimerase AM1326 PF00162 Phosphoglycerate kinase AM1327 PF13742 OB-fold nucleic acid binding domain AM1327 PF02601 Exonuclease VII, large subunit AM1331 PF00132 Bacterial transferase hexapeptide (six repeats) AM1331 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AM1331 PF14602 Hexapeptide repeat of succinyl-transferase AM1332 PF12631 MnmE helical domain AM1332 PF10396 GTP-binding protein TrmE N-terminus AM1332 PF01926 50S ribosome-binding GTPase AM1335 PF02441 Flavoprotein AM1335 PF04127 DNA / pantothenate metabolism flavoprotein AM1336 PF17191 RecG wedge domain AM1336 PF00271 Helicase conserved C-terminal domain AM1336 PF00270 DEAD/DEAH box helicase AM1337 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AM1338 PF13537 Glutamine amidotransferase domain AM1338 PF00156 Phosphoribosyl transferase domain AM1339 PF01195 Peptidyl-tRNA hydrolase AM1340 PF01386 Ribosomal L25p family AM1340 PF14693 Ribosomal protein TL5, C-terminal domain AM1346 PF00156 Phosphoribosyl transferase domain AM1347 PF07687 Peptidase dimerisation domain AM1347 PF01546 Peptidase family M20/M25/M40 AM1348 PF02254 TrkA-N domain AM1348 PF00999 Sodium/hydrogen exchanger family AM1351 PF00364 Biotin-requiring enzyme AM1351 PF02779 Transketolase, pyrimidine binding domain AM1351 PF02780 Transketolase, C-terminal domain AM1353 PF01523 Putative modulator of DNA gyrase AM1355 PF06071 Protein of unknown function (DUF933) AM1355 PF01926 50S ribosome-binding GTPase AM1356 PF02542 YgbB family AM1357 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AM1357 PF02542 YgbB family AM137 PF01259 SAICAR synthetase AM138 PF03129 Anticodon binding domain AM138 PF13393 Histidyl-tRNA synthetase AM141 PF02628 Cytochrome oxidase assembly protein AM142 PF02548 Ketopantoate hydroxymethyltransferase AM144 PF00005 ABC transporter AM145 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM149 PF00313 'Cold-shock' DNA-binding domain AM150 PF00989 PAS fold AM150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM150 PF00672 HAMP domain AM150 PF00512 His Kinase A (phospho-acceptor) domain AM152 PF12826 Helix-hairpin-helix motif AM152 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AM152 PF03120 NAD-dependent DNA ligase OB-fold domain AM152 PF00533 BRCA1 C Terminus (BRCT) domain AM152 PF01653 NAD-dependent DNA ligase adenylation domain AM153 PF00462 Glutaredoxin AM157 PF18073 Rubredoxin metal binding domain AM161 PF01250 Ribosomal protein S6 AM161.5 PF01084 Ribosomal protein S18 AM162 PF03948 Ribosomal protein L9, C-terminal domain AM162 PF01281 Ribosomal protein L9, N-terminal domain AM164 PF00464 Serine hydroxymethyltransferase AM168 PF00890 FAD binding domain AM168 PF02910 Fumarate reductase flavoprotein C-term AM169 PF13085 2Fe-2S iron-sulfur cluster binding domain AM170 PF02511 Thymidylate synthase complementing protein AM171 PF07690 Major Facilitator Superfamily AM172 PF17864 RuvB AAA lid domain AM172 PF05491 RuvB C-terminal winged helix domain AM172 PF05496 Holliday junction DNA helicase RuvB P-loop domain AM173 PF01330 RuvA N terminal domain AM173 PF07499 RuvA, C-terminal domain AM175 PF01578 Cytochrome C assembly protein AM177 PF00625 Guanylate kinase AM179 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AM179 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AM190 PF00034 Cytochrome c AM193 PF00361 Proton-conducting membrane transporter AM195 PF00391 PEP-utilising enzyme, mobile domain AM195 PF02896 PEP-utilising enzyme, TIM barrel domain AM195 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM198 PF13419 Haloacid dehalogenase-like hydrolase AM199 PF02938 GAD domain AM199 PF01336 OB-fold nucleic acid binding domain AM199 PF00152 tRNA synthetases class II (D, K and N) AM200 PF02938 GAD domain AM200 PF01336 OB-fold nucleic acid binding domain AM200 PF00152 tRNA synthetases class II (D, K and N) AM202 PF04972 BON domain AM203 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AM203 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AM205 PF07478 D-ala D-ala ligase C-terminus AM205 PF01820 D-ala D-ala ligase N-terminus AM207 PF00158 Sigma-54 interaction domain AM207 PF00072 Response regulator receiver domain AM207 PF02954 Bacterial regulatory protein, Fis family AM215 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM223 PF00528 Binding-protein-dependent transport system inner membrane component AM224 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM224 PF01411 tRNA synthetases class II (A) AM230 PF00549 CoA-ligase AM230 PF02629 CoA binding domain AM231 PF08442 ATP-grasp domain AM231 PF00549 CoA-ligase AM233 PF01165 Ribosomal protein S21 AM237 PF03060 Nitronate monooxygenase AM238 PF01292 Prokaryotic cytochrome b561 AM240 PF00528 Binding-protein-dependent transport system inner membrane component AM241 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM241 PF00529 HlyD membrane-fusion protein of T1SS AM243 PF08245 Mur ligase middle domain AM244 PF07676 WD40-like Beta Propeller Repeat AM244 PF04052 TolB amino-terminal domain AM245 PF12706 Beta-lactamase superfamily domain AM245 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AM245 PF17770 Ribonuclease J C-terminal domain AM249 PF00164 Ribosomal protein S12/S23 AM250 PF00177 Ribosomal protein S7p/S5e AM253 PF00009 Elongation factor Tu GTP binding domain AM253 PF00679 Elongation factor G C-terminus AM253 PF14492 Elongation Factor G, domain II AM253 PF03764 Elongation factor G, domain IV AM253 PF03144 Elongation factor Tu domain 2 AM254 PF03144 Elongation factor Tu domain 2 AM254 PF00009 Elongation factor Tu GTP binding domain AM254 PF03143 Elongation factor Tu C-terminal domain AM256 PF00467 KOW motif AM256 PF02357 Transcription termination factor nusG AM258 PF03946 Ribosomal protein L11, N-terminal domain AM258 PF00298 Ribosomal protein L11, RNA binding domain AM259 PF00687 Ribosomal protein L1p/L10e family AM260 PF00466 Ribosomal protein L10 AM261 PF00542 Ribosomal protein L7/L12 C-terminal domain AM262 PF00562 RNA polymerase Rpb2, domain 6 AM262 PF10385 RNA polymerase beta subunit external 1 domain AM262 PF04560 RNA polymerase Rpb2, domain 7 AM262 PF04563 RNA polymerase beta subunit AM262 PF04561 RNA polymerase Rpb2, domain 2 AM262 PF04565 RNA polymerase Rpb2, domain 3 AM263 PF04997 RNA polymerase Rpb1, domain 1 AM263 PF05000 RNA polymerase Rpb1, domain 4 AM263 PF04983 RNA polymerase Rpb1, domain 3 AM263 PF00623 RNA polymerase Rpb1, domain 2 AM263 PF04998 RNA polymerase Rpb1, domain 5 AM264 PF01351 Ribonuclease HII AM268 PF00155 Aminotransferase class I and II AM271 PF03309 Type III pantothenate kinase AM273 PF01180 Dihydroorotate dehydrogenase AM275 PF01327 Polypeptide deformylase AM276 PF02230 Phospholipase/Carboxylesterase AM281 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AM281 PF01243 Pyridoxamine 5'-phosphate oxidase AM282 PF08245 Mur ligase middle domain AM282 PF02875 Mur ligase family, glutamate ligase domain AM284 PF01053 Cys/Met metabolism PLP-dependent enzyme AM287 PF02811 PHP domain AM287 PF07733 Bacterial DNA polymerase III alpha NTPase domain AM287 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AM287 PF14579 Helix-hairpin-helix motif AM289 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM290 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM292 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM295 PF08543 Phosphomethylpyrimidine kinase AM295 PF02581 Thiamine monophosphate synthase AM297 PF01594 AI-2E family transporter AM301 PF01479 S4 domain AM301 PF00163 Ribosomal protein S4/S9 N-terminal domain AM308 PF05697 Bacterial trigger factor protein (TF) AM308 PF05698 Bacterial trigger factor protein (TF) C-terminus AM308 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM309 PF00574 Clp protease AM310 PF07724 AAA domain (Cdc48 subfamily) AM310 PF10431 C-terminal, D2-small domain, of ClpB protein AM310 PF06689 ClpX C4-type zinc finger AM311 PF02190 ATP-dependent protease La (LON) substrate-binding domain AM311 PF05362 Lon protease (S16) C-terminal proteolytic domain AM311 PF00004 ATPase family associated with various cellular activities (AAA) AM313 PF02911 Formyl transferase, C-terminal domain AM313 PF00551 Formyl transferase AM316 PF03618 Kinase/pyrophosphorylase AM318 PF02581 Thiamine monophosphate synthase AM320 PF03471 Transporter associated domain AM320 PF01595 Cyclin M transmembrane N-terminal domain AM320 PF00571 CBS domain AM322 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AM322 PF01580 FtsK/SpoIIIE family AM322 PF09397 Ftsk gamma domain AM322 PF17854 FtsK alpha domain AM326 PF00202 Aminotransferase class-III AM327 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM327 PF00512 His Kinase A (phospho-acceptor) domain AM327 PF00989 PAS fold AM329 PF02472 Biopolymer transport protein ExbD/TolR AM330 PF01618 MotA/TolQ/ExbB proton channel family AM332 PF01119 DNA mismatch repair protein, C-terminal domain AM332 PF08676 MutL C terminal dimerisation domain AM333 PF01119 DNA mismatch repair protein, C-terminal domain AM333 PF08676 MutL C terminal dimerisation domain AM334 PF02481 DNA recombination-mediator protein A AM334 PF17782 DprA winged helix domain AM338 PF02801 Beta-ketoacyl synthase, C-terminal domain AM338 PF00109 Beta-ketoacyl synthase, N-terminal domain AM339 PF00550 Phosphopantetheine attachment site AM340 PF00471 Ribosomal protein L33 AM343 PF02600 Disulfide bond formation protein DsbB AM369 PF13361 UvrD-like helicase C-terminal domain AM369 PF00580 UvrD/REP helicase N-terminal domain AM372 PF03989 DNA gyrase C-terminal domain, beta-propeller AM372 PF00521 DNA gyrase/topoisomerase IV, subunit A AM373 PF00730 HhH-GPD superfamily base excision DNA repair protein AM373 PF00633 Helix-hairpin-helix motif AM373 PF10576 Iron-sulfur binding domain of endonuclease III AM376 PF00183 Hsp90 protein AM376 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM384 PF10397 Adenylosuccinate lyase C-terminus AM384 PF00206 Lyase AM385 PF08459 UvrC Helix-hairpin-helix N-terminal AM385 PF02151 UvrB/uvrC motif AM385 PF01541 GIY-YIG catalytic domain AM389 PF02237 Biotin protein ligase C terminal domain AM389 PF03099 Biotin/lipoate A/B protein ligase family AM392 PF00005 ABC transporter AM392 PF12857 TOBE-like domain AM394 PF02132 RecR protein AM394 PF13662 Toprim domain AM396 PF01297 Zinc-uptake complex component A periplasmic AM397 PF00005 ABC transporter AM399 PF03109 ABC1 family AM401 PF00919 Uncharacterized protein family UPF0004 AM401 PF04055 Radical SAM superfamily AM405 PF16870 2-oxoglutarate dehydrogenase C-terminal AM405 PF16078 2-oxoglutarate dehydrogenase N-terminus AM405 PF02779 Transketolase, pyrimidine binding domain AM405 PF00676 Dehydrogenase E1 component AM407 PF00701 Dihydrodipicolinate synthetase family AM409 PF01230 HIT domain AM412 PF01624 MutS domain I AM412 PF05188 MutS domain II AM412 PF00488 MutS domain V AM412 PF05192 MutS domain III AM412 PF05190 MutS family domain IV AM414 PF07690 Major Facilitator Superfamily AM415 PF07690 Major Facilitator Superfamily AM415 PF00083 Sugar (and other) transporter AM416 PF02540 NAD synthase AM416 PF00795 Carbon-nitrogen hydrolase AM417 PF00490 Delta-aminolevulinic acid dehydratase AM418 PF03717 Penicillin-binding Protein dimerisation domain AM418 PF00905 Penicillin binding protein transpeptidase domain AM420 PF07690 Major Facilitator Superfamily AM424 PF00436 Single-strand binding protein family AM426 PF02934 GatB/GatE catalytic domain AM426 PF02637 GatB domain AM430 PF08299 Bacterial dnaA protein helix-turn-helix AM430 PF11638 DnaA N-terminal domain AM430 PF00308 Bacterial dnaA protein AM432 PF01467 Cytidylyltransferase-like AM434 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AM435 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AM435 PF12169 DNA polymerase III subunits gamma and tau domain III AM435 PF12170 DNA polymerase III tau subunit V interacting with alpha AM436 PF01300 Telomere recombination AM438 PF01121 Dephospho-CoA kinase AM440 PF13667 ThiC-associated domain AM440 PF01964 Radical SAM ThiC family AM442 PF01192 RNA polymerase Rpb6 AM446 PF13603 Leucyl-tRNA synthetase, Domain 2 AM446 PF08264 Anticodon-binding domain of tRNA AM446 PF00133 tRNA synthetases class I (I, L, M and V) AM446 PF09334 tRNA synthetases class I (M) AM447 PF01026 TatD related DNase AM448 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM449 PF03100 CcmE AM451 PF01975 Survival protein SurE AM452 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM453 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM454 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AM456 PF17755 UvrA DNA-binding domain AM456 PF17760 UvrA interaction domain AM458 PF00885 6,7-dimethyl-8-ribityllumazine synthase AM460 PF14849 YidC periplasmic domain AM460 PF02096 60Kd inner membrane protein AM462 PF01066 CDP-alcohol phosphatidyltransferase AM463 PF02666 Phosphatidylserine decarboxylase AM465 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM471 PF04101 Glycosyltransferase family 28 C-terminal domain AM471 PF03033 Glycosyltransferase family 28 N-terminal domain AM472 PF08207 Elongation factor P (EF-P) KOW-like domain AM472 PF09285 Elongation factor P, C-terminal AM472 PF01132 Elongation factor P (EF-P) OB domain AM474 PF01479 S4 domain AM474 PF00849 RNA pseudouridylate synthase AM475 PF00990 Diguanylate cyclase, GGDEF domain AM475 PF00072 Response regulator receiver domain AM477 PF05088 Bacterial NAD-glutamate dehydrogenase AM480 PF06055 Exopolysaccharide synthesis, ExoD AM481 PF01406 tRNA synthetases class I (C) catalytic domain AM481 PF09190 DALR domain AM483 PF00268 Ribonucleotide reductase, small chain AM488 PF08275 DNA primase catalytic core, N-terminal domain AM488 PF01807 CHC2 zinc finger AM488 PF13662 Toprim domain AM490 PF00140 Sigma-70 factor, region 1.2 AM490 PF04546 Sigma-70, non-essential region AM490 PF03979 Sigma-70 factor, region 1.1 AM490 PF04542 Sigma-70 region 2 AM490 PF04539 Sigma-70 region 3 AM490 PF04545 Sigma-70, region 4 AM492 PF01207 Dihydrouridine synthase (Dus) AM493 PF00288 GHMP kinases N terminal domain AM493 PF08544 GHMP kinases C terminal AM498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM498 PF00072 Response regulator receiver domain AM498 PF13188 PAS domain AM498 PF08448 PAS fold AM498 PF00512 His Kinase A (phospho-acceptor) domain AM501 PF01256 Carbohydrate kinase AM501 PF03853 YjeF-related protein N-terminus AM502 PF13368 Topoisomerase C-terminal repeat AM502 PF01396 Topoisomerase DNA binding C4 zinc finger AM502 PF01131 DNA topoisomerase AM502 PF01751 Toprim domain AM506 PF01648 4'-phosphopantetheinyl transferase superfamily AM507 PF03129 Anticodon binding domain AM507 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM509 PF01467 Cytidylyltransferase-like AM510 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM511 PF00578 AhpC/TSA family AM511 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM516 PF13145 PPIC-type PPIASE domain AM524 PF01509 TruB family pseudouridylate synthase (N terminal domain) AM524 PF16198 tRNA pseudouridylate synthase B C-terminal domain AM525 PF00312 Ribosomal protein S15 AM526 PF01138 3' exoribonuclease family, domain 1 AM526 PF00575 S1 RNA binding domain AM526 PF03725 3' exoribonuclease family, domain 2 AM526 PF00013 KH domain AM526 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AM528 PF03144 Elongation factor Tu domain 2 AM528 PF00679 Elongation factor G C-terminus AM528 PF00009 Elongation factor Tu GTP binding domain AM528 PF06421 GTP-binding protein LepA C-terminus AM552 PF00586 AIR synthase related protein, N-terminal domain AM552 PF02769 AIR synthase related protein, C-terminal domain AM556 PF00202 Aminotransferase class-III AM558 PF00398 Ribosomal RNA adenine dimethylase AM559 PF00121 Triosephosphate isomerase AM560 PF16868 NMT1-like family AM561 PF00814 Glycoprotease family AM563 PF02152 Dihydroneopterin aldolase AM564 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AM564 PF00056 lactate/malate dehydrogenase, NAD binding domain AM566 PF08241 Methyltransferase domain AM568 PF11987 Translation-initiation factor 2 AM568 PF00009 Elongation factor Tu GTP binding domain AM570 PF02502 Ribose/Galactose Isomerase AM571 PF08241 Methyltransferase domain AM572 PF00814 Glycoprotease family AM583 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AM583 PF00171 Aldehyde dehydrogenase family AM583 PF01619 Proline dehydrogenase AM583 PF14850 DNA-binding domain of Proline dehydrogenase AM586 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AM586 PF00171 Aldehyde dehydrogenase family AM586 PF01619 Proline dehydrogenase AM586 PF14850 DNA-binding domain of Proline dehydrogenase AM590 PF03330 Lytic transglycolase AM591 PF03372 Endonuclease/Exonuclease/phosphatase family AM593 PF00444 Ribosomal protein L36 AM596 PF01016 Ribosomal L27 protein AM597 PF00829 Ribosomal prokaryotic L21 protein AM600 PF03952 Enolase, N-terminal domain AM600 PF00113 Enolase, C-terminal TIM barrel domain AM601 PF01926 50S ribosome-binding GTPase AM601 PF01018 GTP1/OBG AM605 PF01795 MraW methylase family AM606 PF01812 5-formyltetrahydrofolate cyclo-ligase family AM617 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM618 PF01523 Putative modulator of DNA gyrase AM619 PF01227 GTP cyclohydrolase I AM620 PF00231 ATP synthase AM623 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM625 PF00929 Exonuclease AM626 PF01078 Magnesium chelatase, subunit ChlI AM626 PF13335 Magnesium chelatase, subunit ChlI C-terminal AM631 PF00140 Sigma-70 factor, region 1.2 AM631 PF04545 Sigma-70, region 4 AM631 PF04542 Sigma-70 region 2 AM640 PF00146 NADH dehydrogenase AM641 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AM641 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM641 PF00384 Molybdopterin oxidoreductase AM644 PF00986 DNA gyrase B subunit, carboxyl terminus AM644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM644 PF00204 DNA gyrase B AM644 PF01751 Toprim domain AM645 PF02441 Flavoprotein AM647 PF03918 Cytochrome C biogenesis protein AM650 PF00111 2Fe-2S iron-sulfur cluster binding domain AM651 PF00012 Hsp70 protein AM652 PF07743 HSCB C-terminal oligomerisation domain AM652 PF00226 DnaJ domain AM654 PF01592 NifU-like N terminal domain AM655 PF00266 Aminotransferase class-V AM657 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AM658 PF01921 tRNA synthetases class I (K) AM661 PF01416 tRNA pseudouridine synthase AM662 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM662 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM664 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM665 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AM666 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM666 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM669 PF01728 FtsJ-like methyltransferase AM678 PF00750 tRNA synthetases class I (R) AM678 PF05746 DALR anticodon binding domain AM678 PF03485 Arginyl tRNA synthetase N terminal domain AM680 PF11967 Recombination protein O N terminal AM680 PF02565 Recombination protein O C terminal AM684 PF00133 tRNA synthetases class I (I, L, M and V) AM684 PF08264 Anticodon-binding domain of tRNA AM685 PF00578 AhpC/TSA family AM686 PF04452 RNA methyltransferase AM692 PF03462 PCRF domain AM692 PF00472 RF-1 domain AM694 PF01709 Transcriptional regulator AM698 PF01425 Amidase AM699 PF08245 Mur ligase middle domain AM699 PF02875 Mur ligase family, glutamate ligase domain AM700 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AM700 PF03900 Porphobilinogen deaminase, C-terminal domain AM701 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AM701 PF01565 FAD binding domain AM707 PF12838 4Fe-4S dicluster domain AM708 PF10502 Signal peptidase, peptidase S26 AM709 PF01521 Iron-sulphur cluster biosynthesis AM731 PF10431 C-terminal, D2-small domain, of ClpB protein AM731 PF02861 Clp amino terminal domain, pathogenicity island component AM731 PF17871 AAA lid domain AM731 PF07724 AAA domain (Cdc48 subfamily) AM731 PF00004 ATPase family associated with various cellular activities (AAA) AM733 PF03741 Integral membrane protein TerC family AM734 PF02033 Ribosome-binding factor A AM735 PF11987 Translation-initiation factor 2 AM735 PF00009 Elongation factor Tu GTP binding domain AM736 PF00575 S1 RNA binding domain AM736 PF08529 NusA N-terminal domain AM736 PF13184 NusA-like KH domain AM738 PF00873 AcrB/AcrD/AcrF family AM740 PF00902 Sec-independent protein translocase protein (TatC) AM741 PF04551 GcpE protein AM743 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AM743 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AM743 PF13288 DXP reductoisomerase C-terminal domain AM744 PF00361 Proton-conducting membrane transporter AM745 PF00361 Proton-conducting membrane transporter AM746 PF00361 Proton-conducting membrane transporter AM746 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM747 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM748 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AM750 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM750 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM750 PF10531 SLBB domain AM758 PF02646 RmuC family AM759 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM759 PF02403 Seryl-tRNA synthetase N-terminal domain AM762 PF01218 Coproporphyrinogen III oxidase AM763 PF00696 Amino acid kinase family AM764 PF01926 50S ribosome-binding GTPase AM767 PF03462 PCRF domain AM767 PF00472 RF-1 domain AM769 PF01039 Carboxyl transferase domain AM771 PF06827 Zinc finger found in FPG and IleRS AM771 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM771 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM775 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM781 PF02167 Cytochrome C1 family AM783 PF00033 Cytochrome b/b6/petB AM783 PF00032 Cytochrome b(C-terminal)/b6/petD AM784 PF00355 Rieske [2Fe-2S] domain AM784 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AM789 PF00950 ABC 3 transport family AM791 PF00889 Elongation factor TS AM792 PF00318 Ribosomal protein S2 AM793 PF02545 Maf-like protein AM795 PF01176 Translation initiation factor 1A / IF-1 AM797 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM797 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM798 PF13360 PQQ-like domain AM801 PF01926 50S ribosome-binding GTPase AM801 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AM802 PF01676 Metalloenzyme superfamily AM802 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AM803 PF00117 Glutamine amidotransferase class-I AM803 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AM804 PF02401 LytB protein AM805 PF00692 dUTPase AM807 PF02875 Mur ligase family, glutamate ligase domain AM807 PF08245 Mur ligase middle domain AM807 PF01225 Mur ligase family, catalytic domain AM811 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AM812 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AM814 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AM816 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM816 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM818 PF00528 Binding-protein-dependent transport system inner membrane component AM820 PF04055 Radical SAM superfamily AM824 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM824 PF02785 Biotin carboxylase C-terminal domain AM824 PF00289 Biotin carboxylase, N-terminal domain AM825 PF00849 RNA pseudouridylate synthase AM826 PF00830 Ribosomal L28 family AM827 PF00270 DEAD/DEAH box helicase AM827 PF00271 Helicase conserved C-terminal domain AM827 PF17764 3′ DNA-binding domain (3′BD) AM827 PF18074 Primosomal protein N C-terminal domain AM827 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AM837 PF07650 KH domain AM837 PF01926 50S ribosome-binding GTPase AM839 PF02978 Signal peptide binding domain AM839 PF02881 SRP54-type protein, helical bundle domain AM839 PF00448 SRP54-type protein, GTPase domain AM841 PF03364 Polyketide cyclase / dehydrase and lipid transport AM842 PF00012 Hsp70 protein AM844 PF00575 S1 RNA binding domain AM844 PF10150 Ribonuclease E/G family AM844 PF12111 Polyribonucleotide phosphorylase C terminal AM852 PF00456 Transketolase, thiamine diphosphate binding domain AM852 PF02780 Transketolase, C-terminal domain AM852 PF02779 Transketolase, pyrimidine binding domain AM854 PF00691 OmpA family AM856 PF00709 Adenylosuccinate synthetase AM858 PF01926 50S ribosome-binding GTPase AM858 PF01018 GTP1/OBG AM859 PF03652 Holliday junction resolvase AM860 PF00317 Ribonucleotide reductase, all-alpha domain AM860 PF02867 Ribonucleotide reductase, barrel domain AM860 PF03477 ATP cone domain AM861 PF00348 Polyprenyl synthetase AM863 PF01266 FAD dependent oxidoreductase AM865 PF00772 DnaB-like helicase N terminal domain AM865 PF03796 DnaB-like helicase C terminal domain AM868 PF14437 MafB19-like deaminase AM869 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM869 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM870 PF02504 Fatty acid synthesis protein AM870.5 PF01783 Ribosomal L32p protein family AM871 PF01702 Queuine tRNA-ribosyltransferase AM872 PF00005 ABC transporter AM873 PF01113 Dihydrodipicolinate reductase, N-terminus AM873 PF05173 Dihydrodipicolinate reductase, C-terminus AM875 PF01613 Flavin reductase like domain AM876 PF01040 UbiA prenyltransferase family AM880.5 PF00468 Ribosomal protein L34 AM881 PF00825 Ribonuclease P AM885 PF01588 Putative tRNA binding domain AM885 PF03483 B3/4 domain AM885 PF03147 Ferredoxin-fold anticodon binding domain AM885 PF03484 tRNA synthetase B5 domain AM885 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AM886 PF01196 Ribosomal protein L17 AM887 PF01000 RNA polymerase Rpb3/RpoA insert domain AM887 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AM887 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AM888 PF00411 Ribosomal protein S11 AM890 PF00416 Ribosomal protein S13/S18 AM892 PF00344 SecY translocase AM893 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AM894 PF00333 Ribosomal protein S5, N-terminal domain AM894 PF03719 Ribosomal protein S5, C-terminal domain AM895 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AM896 PF00347 Ribosomal protein L6 AM897 PF00410 Ribosomal protein S8 AM898 PF00253 Ribosomal protein S14p/S29e AM899 PF00673 ribosomal L5P family C-terminus AM899 PF00281 Ribosomal protein L5 AM900 PF00467 KOW motif AM900 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AM901 PF00238 Ribosomal protein L14p/L23e AM903 PF00366 Ribosomal protein S17 AM904 PF00831 Ribosomal L29 protein AM905 PF00252 Ribosomal protein L16p/L10e AM906 PF00189 Ribosomal protein S3, C-terminal domain AM906 PF07650 KH domain AM907 PF00237 Ribosomal protein L22p/L17e AM908 PF00203 Ribosomal protein S19 AM909 PF00181 Ribosomal Proteins L2, RNA binding domain AM909 PF03947 Ribosomal Proteins L2, C-terminal domain AM910 PF00276 Ribosomal protein L23 AM911 PF00573 Ribosomal protein L4/L1 family AM912 PF00297 Ribosomal protein L3 AM913 PF00338 Ribosomal protein S10p/S20e AM914 PF00009 Elongation factor Tu GTP binding domain AM914 PF03144 Elongation factor Tu domain 2 AM914 PF03143 Elongation factor Tu C-terminal domain AM915 PF00588 SpoU rRNA Methylase family AM915 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM916 PF02224 Cytidylate kinase AM917 PF00575 S1 RNA binding domain AM918 PF01343 Peptidase family S49 AM922 PF00762 Ferrochelatase AM923 PF03969 AFG1-like ATPase AM927 PF12705 PD-(D/E)XK nuclease superfamily AM927 PF00580 UvrD/REP helicase N-terminal domain AM927 PF13361 UvrD-like helicase C-terminal domain AM928 PF00107 Zinc-binding dehydrogenase AM929 PF00664 ABC transporter transmembrane region AM929 PF00005 ABC transporter AM931 PF00809 Pterin binding enzyme AM933 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM933 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM933 PF02142 MGS-like domain AM937 PF00206 Lyase AM937 PF10415 Fumarase C C-terminus AM938 PF04127 DNA / pantothenate metabolism flavoprotein AM938 PF02441 Flavoprotein AM939 PF01979 Amidohydrolase family AM940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM941 PF03099 Biotin/lipoate A/B protein ligase family AM942 PF04002 RadC-like JAB domain AM943 PF00166 Chaperonin 10 Kd subunit AM944 PF00118 TCP-1/cpn60 chaperonin family AM949 PF10431 C-terminal, D2-small domain, of ClpB protein AM949 PF07724 AAA domain (Cdc48 subfamily) AM949 PF17871 AAA lid domain AM949 PF02861 Clp amino terminal domain, pathogenicity island component AM949 PF00004 ATPase family associated with various cellular activities (AAA) AM953 PF00775 Dioxygenase AM956 PF02789 Cytosol aminopeptidase family, N-terminal domain AM956 PF00883 Cytosol aminopeptidase family, catalytic domain AM957 PF00551 Formyl transferase AM961 PF13932 GidA associated domain AM961 PF01134 Glucose inhibited division protein A AM964 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AM965 PF01476 LysM domain AM965 PF01551 Peptidase family M23 AM969 PF04055 Radical SAM superfamily AM969 PF06968 Biotin and Thiamin Synthesis associated domain AM973 PF00586 AIR synthase related protein, N-terminal domain AM973 PF02769 AIR synthase related protein, C-terminal domain AM973 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AM975 PF00809 Pterin binding enzyme AM975 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AM979 PF01435 Peptidase family M48 AM983 PF02769 AIR synthase related protein, C-terminal domain AM983 PF00586 AIR synthase related protein, N-terminal domain AM984 PF00589 Phage integrase family AM984 PF02899 Phage integrase, N-terminal SAM-like domain AM985 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AM985 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AM992 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM992 PF07498 Rho termination factor, N-terminal domain AM992 PF07497 Rho termination factor, RNA-binding domain AM998 PF00227 Proteasome subunit AM999 PF10431 C-terminal, D2-small domain, of ClpB protein AM999 PF07724 AAA domain (Cdc48 subfamily) AM999 PF00004 ATPase family associated with various cellular activities (AAA)