locus-tag class description APH_0001 PF00476 DNA polymerase family A APH_0001 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APH_0001 PF01367 5'-3' exonuclease, C-terminal SAM fold APH_0002 PF00834 Ribulose-phosphate 3 epimerase family APH_0003 PF02405 Permease MlaE APH_0004 PF00005 ABC transporter APH_0007 PF02773 S-adenosylmethionine synthetase, C-terminal domain APH_0007 PF00438 S-adenosylmethionine synthetase, N-terminal domain APH_0007 PF02772 S-adenosylmethionine synthetase, central domain APH_0009 PF01494 FAD binding domain APH_0013 PF02091 Glycyl-tRNA synthetase alpha subunit APH_0014 PF05746 DALR anticodon binding domain APH_0014 PF02092 Glycyl-tRNA synthetase beta subunit APH_0015 PF00684 DnaJ central domain APH_0015 PF01556 DnaJ C terminal domain APH_0015 PF00226 DnaJ domain APH_0016 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APH_0016 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APH_0017 PF02660 Glycerol-3-phosphate acyltransferase APH_0018 PF02075 Crossover junction endodeoxyribonuclease RuvC APH_0019 PF00510 Cytochrome c oxidase subunit III APH_0020 PF01208 Uroporphyrinogen decarboxylase (URO-D) APH_0021 PF03471 Transporter associated domain APH_0021 PF00571 CBS domain APH_0023 PF04860 Phage portal protein APH_0025 PF13847 Methyltransferase domain APH_0026 PF02445 Quinolinate synthetase A protein APH_0027 PF11953 Domain of unknown function (DUF3470) APH_0027 PF00037 4Fe-4S binding domain APH_0035 PF00579 tRNA synthetases class I (W and Y) APH_0036 PF01025 GrpE APH_0037 PF01872 RibD C-terminal domain APH_0037 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APH_0038 PF06418 CTP synthase N-terminus APH_0038 PF00117 Glutamine amidotransferase class-I APH_0040 PF00589 Phage integrase family APH_0040 PF02899 Phage integrase, N-terminal SAM-like domain APH_0041 PF00005 ABC transporter APH_0042 PF03949 Malic enzyme, NAD binding domain APH_0042 PF01515 Phosphate acetyl/butaryl transferase APH_0042 PF00390 Malic enzyme, N-terminal domain APH_0044 PF00361 Proton-conducting membrane transporter APH_0045 PF02470 MlaD protein APH_0047 PF03477 ATP cone domain APH_0051 PF13416 Bacterial extracellular solute-binding protein APH_0052 PF03966 Trm112p-like protein APH_0053 PF08946 Osmosensory transporter coiled coil APH_0053 PF00083 Sugar (and other) transporter APH_0054 PF00886 Ribosomal protein S16 APH_0058 PF02773 S-adenosylmethionine synthetase, C-terminal domain APH_0058 PF00438 S-adenosylmethionine synthetase, N-terminal domain APH_0058 PF02772 S-adenosylmethionine synthetase, central domain APH_0059 PF01409 tRNA synthetases class II core domain (F) APH_0059 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APH_0060 PF00453 Ribosomal protein L20 APH_0061 PF01632 Ribosomal protein L35 APH_0064 PF07497 Rho termination factor, RNA-binding domain APH_0064 PF07498 Rho termination factor, N-terminal domain APH_0064 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_0065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APH_0065 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_0066 PF00684 DnaJ central domain APH_0066 PF00226 DnaJ domain APH_0066 PF01556 DnaJ C terminal domain APH_0067 PF01106 NifU-like domain APH_0070 PF05690 Thiazole biosynthesis protein ThiG APH_0072 PF00749 tRNA synthetases class I (E and Q), catalytic domain APH_0079 PF02609 Exonuclease VII small subunit APH_0080 PF00085 Thioredoxin APH_0082 PF00676 Dehydrogenase E1 component APH_0083 PF12146 Serine aminopeptidase, S33 APH_0087 PF00551 Formyl transferase APH_0088 PF00571 CBS domain APH_0088 PF00478 IMP dehydrogenase / GMP reductase domain APH_0089 PF01513 ATP-NAD kinase APH_0091 PF04860 Phage portal protein APH_0092 PF00698 Acyl transferase domain APH_0093 PF02223 Thymidylate kinase APH_0097 PF02556 Preprotein translocase subunit SecB APH_0098 PF13462 Thioredoxin APH_0101 PF00675 Insulinase (Peptidase family M16) APH_0101 PF05193 Peptidase M16 inactive domain APH_0104 PF00696 Amino acid kinase family APH_0106 PF00677 Lumazine binding domain APH_0107 PF00271 Helicase conserved C-terminal domain APH_0107 PF03461 TRCF domain APH_0107 PF02559 CarD-like/TRCF domain APH_0107 PF17757 UvrB interaction domain APH_0107 PF00270 DEAD/DEAH box helicase APH_0109 PF00075 RNase H APH_0111 PF00696 Amino acid kinase family APH_0112 PF01765 Ribosome recycling factor APH_0119 PF01259 SAICAR synthetase APH_0120 PF13393 Histidyl-tRNA synthetase APH_0120 PF03129 Anticodon binding domain APH_0123 PF02628 Cytochrome oxidase assembly protein APH_0125 PF00005 ABC transporter APH_0129 PF12327 FtsZ family, C-terminal domain APH_0129 PF00091 Tubulin/FtsZ family, GTPase domain APH_0135 PF00313 'Cold-shock' DNA-binding domain APH_0136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_0136 PF00512 His Kinase A (phospho-acceptor) domain APH_0136 PF00672 HAMP domain APH_0136 PF00989 PAS fold APH_0137 PF01612 3'-5' exonuclease APH_0137 PF00570 HRDC domain APH_0138 PF03120 NAD-dependent DNA ligase OB-fold domain APH_0138 PF00533 BRCA1 C Terminus (BRCT) domain APH_0138 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APH_0138 PF12826 Helix-hairpin-helix motif APH_0138 PF01653 NAD-dependent DNA ligase adenylation domain APH_0139 PF00462 Glutaredoxin APH_0141 PF08534 Redoxin APH_0147 PF00625 Guanylate kinase APH_0151 PF01250 Ribosomal protein S6 APH_0152 PF01084 Ribosomal protein S18 APH_0153 PF03948 Ribosomal protein L9, C-terminal domain APH_0153 PF01281 Ribosomal protein L9, N-terminal domain APH_0154 PF00464 Serine hydroxymethyltransferase APH_0157 PF00664 ABC transporter transmembrane region APH_0157 PF00005 ABC transporter APH_0158 PF02910 Fumarate reductase flavoprotein C-term APH_0158 PF00890 FAD binding domain APH_0159 PF13085 2Fe-2S iron-sulfur cluster binding domain APH_0159 PF13237 4Fe-4S dicluster domain APH_0160 PF02511 Thymidylate synthase complementing protein APH_0161 PF02910 Fumarate reductase flavoprotein C-term APH_0161 PF00890 FAD binding domain APH_0162 PF13085 2Fe-2S iron-sulfur cluster binding domain APH_0162 PF13237 4Fe-4S dicluster domain APH_0163 PF02511 Thymidylate synthase complementing protein APH_0164 PF07690 Major Facilitator Superfamily APH_0165 PF02091 Glycyl-tRNA synthetase alpha subunit APH_0166 PF17864 RuvB AAA lid domain APH_0166 PF05491 RuvB C-terminal winged helix domain APH_0166 PF05496 Holliday junction DNA helicase RuvB P-loop domain APH_0167 PF01330 RuvA N terminal domain APH_0167 PF07499 RuvA, C-terminal domain APH_0168 PF01578 Cytochrome C assembly protein APH_0170 PF00625 Guanylate kinase APH_0175 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APH_0175 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APH_0180 PF00034 Cytochrome c APH_0181 PF00361 Proton-conducting membrane transporter APH_0185 PF02896 PEP-utilising enzyme, TIM barrel domain APH_0185 PF00391 PEP-utilising enzyme, mobile domain APH_0185 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APH_0187 PF13419 Haloacid dehalogenase-like hydrolase APH_0190 PF02938 GAD domain APH_0190 PF01336 OB-fold nucleic acid binding domain APH_0190 PF00152 tRNA synthetases class II (D, K and N) APH_0192 PF04972 BON domain APH_0193 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APH_0193 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APH_0195 PF08478 POTRA domain, FtsQ-type APH_0195 PF03799 Cell division protein FtsQ APH_0196 PF00072 Response regulator receiver domain APH_0196 PF02954 Bacterial regulatory protein, Fis family APH_0196 PF00158 Sigma-54 interaction domain APH_0198 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APH_0198 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APH_0200 PF02899 Phage integrase, N-terminal SAM-like domain APH_0200 PF00589 Phage integrase family APH_0202 PF00586 AIR synthase related protein, N-terminal domain APH_0202 PF02769 AIR synthase related protein, C-terminal domain APH_0210 PF00586 AIR synthase related protein, N-terminal domain APH_0210 PF02769 AIR synthase related protein, C-terminal domain APH_0212 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APH_0213 PF00586 AIR synthase related protein, N-terminal domain APH_0213 PF02769 AIR synthase related protein, C-terminal domain APH_0213 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APH_0218 PF04055 Radical SAM superfamily APH_0218 PF06968 Biotin and Thiamin Synthesis associated domain APH_0221 PF01551 Peptidase family M23 APH_0221 PF01476 LysM domain APH_0222 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APH_0224 PF13932 GidA associated domain APH_0224 PF01134 Glucose inhibited division protein A APH_0225 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal APH_0225 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APH_0225 PF02769 AIR synthase related protein, C-terminal domain APH_0230 PF00551 Formyl transferase APH_0231 PF02789 Cytosol aminopeptidase family, N-terminal domain APH_0231 PF00883 Cytosol aminopeptidase family, catalytic domain APH_0232 PF00775 Dioxygenase APH_0235 PF07724 AAA domain (Cdc48 subfamily) APH_0235 PF17871 AAA lid domain APH_0235 PF02861 Clp amino terminal domain, pathogenicity island component APH_0235 PF10431 C-terminal, D2-small domain, of ClpB protein APH_0235 PF00004 ATPase family associated with various cellular activities (AAA) APH_0240 PF00118 TCP-1/cpn60 chaperonin family APH_0241 PF00166 Chaperonin 10 Kd subunit APH_0242 PF04002 RadC-like JAB domain APH_0243 PF03099 Biotin/lipoate A/B protein ligase family APH_0245 PF01979 Amidohydrolase family APH_0246 PF02441 Flavoprotein APH_0246 PF04127 DNA / pantothenate metabolism flavoprotein APH_0247 PF10415 Fumarase C C-terminus APH_0247 PF00206 Lyase APH_0249 PF02142 MGS-like domain APH_0249 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APH_0249 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APH_0254 PF00809 Pterin binding enzyme APH_0256 PF00664 ABC transporter transmembrane region APH_0256 PF00005 ABC transporter APH_0257 PF08240 Alcohol dehydrogenase GroES-like domain APH_0257 PF00107 Zinc-binding dehydrogenase APH_0258 PF12705 PD-(D/E)XK nuclease superfamily APH_0258 PF00580 UvrD/REP helicase N-terminal domain APH_0258 PF13361 UvrD-like helicase C-terminal domain APH_0263 PF00762 Ferrochelatase APH_0268 PF02779 Transketolase, pyrimidine binding domain APH_0268 PF02780 Transketolase, C-terminal domain APH_0268 PF00456 Transketolase, thiamine diphosphate binding domain APH_0271 PF00216 Bacterial DNA-binding protein APH_0272 PF01343 Peptidase family S49 APH_0273 PF00575 S1 RNA binding domain APH_0274 PF02224 Cytidylate kinase APH_0275 PF00588 SpoU rRNA Methylase family APH_0275 PF08032 RNA 2'-O ribose methyltransferase substrate binding APH_0278 PF03143 Elongation factor Tu C-terminal domain APH_0278 PF03144 Elongation factor Tu domain 2 APH_0278 PF00009 Elongation factor Tu GTP binding domain APH_0279 PF00338 Ribosomal protein S10p/S20e APH_0280 PF00297 Ribosomal protein L3 APH_0281 PF00573 Ribosomal protein L4/L1 family APH_0282 PF00276 Ribosomal protein L23 APH_0283 PF03947 Ribosomal Proteins L2, C-terminal domain APH_0283 PF00181 Ribosomal Proteins L2, RNA binding domain APH_0284 PF00203 Ribosomal protein S19 APH_0285 PF00237 Ribosomal protein L22p/L17e APH_0286 PF07650 KH domain APH_0286 PF00189 Ribosomal protein S3, C-terminal domain APH_0287 PF00252 Ribosomal protein L16p/L10e APH_0288 PF00831 Ribosomal L29 protein APH_0289 PF00366 Ribosomal protein S17 APH_0290 PF00238 Ribosomal protein L14p/L23e APH_0291 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APH_0291 PF00467 KOW motif APH_0292 PF00673 ribosomal L5P family C-terminus APH_0292 PF00281 Ribosomal protein L5 APH_0293 PF00253 Ribosomal protein S14p/S29e APH_0294 PF00410 Ribosomal protein S8 APH_0295 PF00347 Ribosomal protein L6 APH_0296 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APH_0297 PF00333 Ribosomal protein S5, N-terminal domain APH_0297 PF03719 Ribosomal protein S5, C-terminal domain APH_0298 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APH_0299 PF00344 SecY translocase APH_0300 PF05191 Adenylate kinase, active site lid APH_0301 PF00416 Ribosomal protein S13/S18 APH_0302 PF00411 Ribosomal protein S11 APH_0303 PF01000 RNA polymerase Rpb3/RpoA insert domain APH_0303 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APH_0303 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APH_0304 PF01196 Ribosomal protein L17 APH_0305 PF01588 Putative tRNA binding domain APH_0305 PF03147 Ferredoxin-fold anticodon binding domain APH_0305 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APH_0305 PF03483 B3/4 domain APH_0305 PF03484 tRNA synthetase B5 domain APH_0306 PF03772 Competence protein APH_0306 PF13567 Domain of unknown function (DUF4131) APH_0306 PF00753 Metallo-beta-lactamase superfamily APH_0308 PF00825 Ribonuclease P APH_0309 PF00468 Ribosomal protein L34 APH_0310 PF01040 UbiA prenyltransferase family APH_0311 PF01613 Flavin reductase like domain APH_0313 PF00005 ABC transporter APH_0314 PF01702 Queuine tRNA-ribosyltransferase APH_0315 PF01783 Ribosomal L32p protein family APH_0316 PF02504 Fatty acid synthesis protein APH_0317 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APH_0317 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APH_0321 PF14437 MafB19-like deaminase APH_0323 PF03796 DnaB-like helicase C terminal domain APH_0323 PF00772 DnaB-like helicase N terminal domain APH_0325 PF01266 FAD dependent oxidoreductase APH_0329 PF00348 Polyprenyl synthetase APH_0331 PF00317 Ribonucleotide reductase, all-alpha domain APH_0331 PF02867 Ribonucleotide reductase, barrel domain APH_0331 PF03477 ATP cone domain APH_0332 PF03652 Holliday junction resolvase APH_0336 PF00709 Adenylosuccinate synthetase APH_0337 PF17764 3′ DNA-binding domain (3′BD) APH_0337 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APH_0337 PF18074 Primosomal protein N C-terminal domain APH_0337 PF00270 DEAD/DEAH box helicase APH_0337 PF00271 Helicase conserved C-terminal domain APH_0338 PF00691 OmpA family APH_0340 PF00456 Transketolase, thiamine diphosphate binding domain APH_0340 PF02780 Transketolase, C-terminal domain APH_0340 PF02779 Transketolase, pyrimidine binding domain APH_0342 PF03334 Na+/H+ antiporter subunit APH_0345 PF00575 S1 RNA binding domain APH_0345 PF10150 Ribonuclease E/G family APH_0345 PF12111 Polyribonucleotide phosphorylase C terminal APH_0346 PF00012 Hsp70 protein APH_0348 PF00361 Proton-conducting membrane transporter APH_0349 PF00448 SRP54-type protein, GTPase domain APH_0349 PF02881 SRP54-type protein, helical bundle domain APH_0349 PF02978 Signal peptide binding domain APH_0350 PF07650 KH domain APH_0350 PF01926 50S ribosome-binding GTPase APH_0356 PF17764 3′ DNA-binding domain (3′BD) APH_0356 PF00270 DEAD/DEAH box helicase APH_0356 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APH_0356 PF00271 Helicase conserved C-terminal domain APH_0356 PF18074 Primosomal protein N C-terminal domain APH_0359 PF00830 Ribosomal L28 family APH_0362 PF00849 RNA pseudouridylate synthase APH_0364 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APH_0364 PF00289 Biotin carboxylase, N-terminal domain APH_0364 PF02785 Biotin carboxylase C-terminal domain APH_0367 PF04055 Radical SAM superfamily APH_0370 PF00528 Binding-protein-dependent transport system inner membrane component APH_0371 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APH_0371 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APH_0373 PF03135 CagE, TrbE, VirB family, component of type IV transporter system APH_0375 PF04610 TrbL/VirB6 plasmid conjugal transfer protein APH_0376 PF04610 TrbL/VirB6 plasmid conjugal transfer protein APH_0377 PF04610 TrbL/VirB6 plasmid conjugal transfer protein APH_0379 PF00692 dUTPase APH_0380 PF02401 LytB protein APH_0381 PF00117 Glutamine amidotransferase class-I APH_0381 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APH_0389 PF01676 Metalloenzyme superfamily APH_0389 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APH_0390 PF01926 50S ribosome-binding GTPase APH_0390 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APH_0393 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APH_0393 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_0395 PF01176 Translation initiation factor 1A / IF-1 APH_0396 PF02545 Maf-like protein APH_0397 PF00318 Ribosomal protein S2 APH_0398 PF00889 Elongation factor TS APH_0399 PF00950 ABC 3 transport family APH_0401 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal APH_0401 PF00355 Rieske [2Fe-2S] domain APH_0402 PF00033 Cytochrome b/b6/petB APH_0402 PF00032 Cytochrome b(C-terminal)/b6/petD APH_0403 PF02167 Cytochrome C1 family APH_0408 PF00749 tRNA synthetases class I (E and Q), catalytic domain APH_0411 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APH_0411 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APH_0411 PF06827 Zinc finger found in FPG and IleRS APH_0412 PF01134 Glucose inhibited division protein A APH_0412 PF13932 GidA associated domain APH_0415 PF01039 Carboxyl transferase domain APH_0419 PF03135 CagE, TrbE, VirB family, component of type IV transporter system APH_0420 PF03462 PCRF domain APH_0420 PF00472 RF-1 domain APH_0421 PF01926 50S ribosome-binding GTPase APH_0422 PF00696 Amino acid kinase family APH_0423 PF01218 Coproporphyrinogen III oxidase APH_0427 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APH_0427 PF02403 Seryl-tRNA synthetase N-terminal domain APH_0428 PF02646 RmuC family APH_0434 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APH_0434 PF10531 SLBB domain APH_0434 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APH_0435 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APH_0436 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APH_0437 PF00361 Proton-conducting membrane transporter APH_0437 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APH_0438 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APH_0438 PF00361 Proton-conducting membrane transporter APH_0439 PF00361 Proton-conducting membrane transporter APH_0440 PF13288 DXP reductoisomerase C-terminal domain APH_0440 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APH_0440 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APH_0442 PF04551 GcpE protein APH_0443 PF00902 Sec-independent protein translocase protein (TatC) APH_0444 PF00873 AcrB/AcrD/AcrF family APH_0445 PF00575 S1 RNA binding domain APH_0445 PF13184 NusA-like KH domain APH_0445 PF08529 NusA N-terminal domain APH_0446 PF04760 Translation initiation factor IF-2, N-terminal region APH_0446 PF11987 Translation-initiation factor 2 APH_0446 PF00009 Elongation factor Tu GTP binding domain APH_0447 PF02033 Ribosome-binding factor A APH_0448 PF14492 Elongation Factor G, domain II APH_0448 PF03144 Elongation factor Tu domain 2 APH_0448 PF00009 Elongation factor Tu GTP binding domain APH_0448 PF03764 Elongation factor G, domain IV APH_0448 PF00679 Elongation factor G C-terminus APH_0449 PF03741 Integral membrane protein TerC family APH_0449 PF03471 Transporter associated domain APH_0450 PF17871 AAA lid domain APH_0450 PF07724 AAA domain (Cdc48 subfamily) APH_0450 PF00004 ATPase family associated with various cellular activities (AAA) APH_0450 PF02861 Clp amino terminal domain, pathogenicity island component APH_0450 PF10431 C-terminal, D2-small domain, of ClpB protein APH_0462 PF02637 GatB domain APH_0462 PF02934 GatB/GatE catalytic domain APH_0463 PF00472 RF-1 domain APH_0463 PF03462 PCRF domain APH_0465 PF00436 Single-strand binding protein family APH_0468 PF03462 PCRF domain APH_0468 PF00472 RF-1 domain APH_0470 PF02637 GatB domain APH_0470 PF02934 GatB/GatE catalytic domain APH_0474 PF11638 DnaA N-terminal domain APH_0474 PF00308 Bacterial dnaA protein APH_0474 PF08299 Bacterial dnaA protein helix-turn-helix APH_0478 PF02637 GatB domain APH_0478 PF02934 GatB/GatE catalytic domain APH_0480 PF01709 Transcriptional regulator APH_0482 PF06968 Biotin and Thiamin Synthesis associated domain APH_0482 PF04055 Radical SAM superfamily APH_0482 PF00202 Aminotransferase class-III APH_0492 PF00923 Transaldolase/Fructose-6-phosphate aldolase APH_0494 PF02874 ATP synthase alpha/beta family, beta-barrel domain APH_0494 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_0502 PF01416 tRNA pseudouridine synthase APH_0503 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APH_0503 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APH_0504 PF01728 FtsJ-like methyltransferase APH_0508 PF00444 Ribosomal protein L36 APH_0511 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APH_0514 PF01192 RNA polymerase Rpb6 APH_0519 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APH_0520 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APH_0521 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APH_0524 PF01975 Survival protein SurE APH_0526 PF03100 CcmE APH_0527 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APH_0528 PF01026 TatD related DNase APH_0534 PF13603 Leucyl-tRNA synthetase, Domain 2 APH_0534 PF08264 Anticodon-binding domain of tRNA APH_0534 PF00133 tRNA synthetases class I (I, L, M and V) APH_0534 PF09334 tRNA synthetases class I (M) APH_0537 PF17755 UvrA DNA-binding domain APH_0537 PF17760 UvrA interaction domain APH_0538 PF01029 NusB family APH_0539 PF00885 6,7-dimethyl-8-ribityllumazine synthase APH_0540 PF02096 60Kd inner membrane protein APH_0540 PF14849 YidC periplasmic domain APH_0541 PF02096 60Kd inner membrane protein APH_0541 PF14849 YidC periplasmic domain APH_0542 PF00384 Molybdopterin oxidoreductase APH_0542 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APH_0542 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APH_0543 PF01066 CDP-alcohol phosphatidyltransferase APH_0544 PF02666 Phosphatidylserine decarboxylase APH_0545 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_0547 PF01132 Elongation factor P (EF-P) OB domain APH_0547 PF08207 Elongation factor P (EF-P) KOW-like domain APH_0547 PF09285 Elongation factor P, C-terminal APH_0548 PF00459 Inositol monophosphatase family APH_0549 PF00849 RNA pseudouridylate synthase APH_0549 PF01479 S4 domain APH_0551 PF00990 Diguanylate cyclase, GGDEF domain APH_0551 PF00072 Response regulator receiver domain APH_0553 PF05088 Bacterial NAD-glutamate dehydrogenase APH_0554 PF06055 Exopolysaccharide synthesis, ExoD APH_0555 PF09190 DALR domain APH_0555 PF01406 tRNA synthetases class I (C) catalytic domain APH_0560 PF00268 Ribonucleotide reductase, small chain APH_0564 PF00750 tRNA synthetases class I (R) APH_0564 PF05746 DALR anticodon binding domain APH_0564 PF03485 Arginyl tRNA synthetase N terminal domain APH_0571 PF13662 Toprim domain APH_0571 PF08275 DNA primase catalytic core, N-terminal domain APH_0571 PF01807 CHC2 zinc finger APH_0572 PF01624 MutS domain I APH_0572 PF05188 MutS domain II APH_0572 PF00488 MutS domain V APH_0572 PF05192 MutS domain III APH_0572 PF05190 MutS family domain IV APH_0574 PF00288 GHMP kinases N terminal domain APH_0574 PF08544 GHMP kinases C terminal APH_0575 PF01207 Dihydrouridine synthase (Dus) APH_0576 PF04546 Sigma-70, non-essential region APH_0576 PF03979 Sigma-70 factor, region 1.1 APH_0576 PF00140 Sigma-70 factor, region 1.2 APH_0576 PF04542 Sigma-70 region 2 APH_0576 PF04545 Sigma-70, region 4 APH_0576 PF04539 Sigma-70 region 3 APH_0581 PF03091 CutA1 divalent ion tolerance protein APH_0582 PF00512 His Kinase A (phospho-acceptor) domain APH_0582 PF13188 PAS domain APH_0582 PF00072 Response regulator receiver domain APH_0582 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_0582 PF08448 PAS fold APH_0586 PF01964 Radical SAM ThiC family APH_0586 PF13667 ThiC-associated domain APH_0588 PF01256 Carbohydrate kinase APH_0588 PF03853 YjeF-related protein N-terminus APH_0597 PF01751 Toprim domain APH_0597 PF01396 Topoisomerase DNA binding C4 zinc finger APH_0597 PF13368 Topoisomerase C-terminal repeat APH_0597 PF01131 DNA topoisomerase APH_0600 PF13667 ThiC-associated domain APH_0600 PF01964 Radical SAM ThiC family APH_0607 PF01921 tRNA synthetases class I (K) APH_0610 PF00814 Glycoprotease family APH_0622 PF00398 Ribosomal RNA adenine dimethylase APH_0624 PF00121 Triosephosphate isomerase APH_0625 PF16868 NMT1-like family APH_0626 PF00814 Glycoprotease family APH_0629 PF00056 lactate/malate dehydrogenase, NAD binding domain APH_0629 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APH_0642 PF02502 Ribose/Galactose Isomerase APH_0646 PF01648 4'-phosphopantetheinyl transferase superfamily APH_0647 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APH_0647 PF03129 Anticodon binding domain APH_0650 PF01467 Cytidylyltransferase-like APH_0658 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_0659 PF00578 AhpC/TSA family APH_0659 PF10417 C-terminal domain of 1-Cys peroxiredoxin APH_0669 PF01619 Proline dehydrogenase APH_0669 PF14850 DNA-binding domain of Proline dehydrogenase APH_0669 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APH_0669 PF00171 Aldehyde dehydrogenase family APH_0671 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APH_0674 PF00266 Aminotransferase class-V APH_0675 PF01592 NifU-like N terminal domain APH_0676 PF01521 Iron-sulphur cluster biosynthesis APH_0677 PF07743 HSCB C-terminal oligomerisation domain APH_0677 PF00226 DnaJ domain APH_0678 PF00012 Hsp70 protein APH_0679 PF00111 2Fe-2S iron-sulfur cluster binding domain APH_0690 PF01795 MraW methylase family APH_0694 PF01018 GTP1/OBG APH_0694 PF01926 50S ribosome-binding GTPase APH_0695 PF03952 Enolase, N-terminal domain APH_0695 PF00113 Enolase, C-terminal TIM barrel domain APH_0697 PF00829 Ribosomal prokaryotic L21 protein APH_0698 PF01016 Ribosomal L27 protein APH_0700 PF03485 Arginyl tRNA synthetase N terminal domain APH_0700 PF00750 tRNA synthetases class I (R) APH_0700 PF05746 DALR anticodon binding domain APH_0701 PF03485 Arginyl tRNA synthetase N terminal domain APH_0701 PF05746 DALR anticodon binding domain APH_0701 PF00750 tRNA synthetases class I (R) APH_0705 PF01523 Putative modulator of DNA gyrase APH_0706 PF01227 GTP cyclohydrolase I APH_0707 PF00231 ATP synthase APH_0711 PF00146 NADH dehydrogenase APH_0712 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APH_0712 PF00384 Molybdopterin oxidoreductase APH_0712 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APH_0716 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_0716 PF01751 Toprim domain APH_0716 PF00204 DNA gyrase B APH_0716 PF00986 DNA gyrase B subunit, carboxyl terminus APH_0730 PF00929 Exonuclease APH_0732 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APH_0734 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_0735 PF02769 AIR synthase related protein, C-terminal domain APH_0735 PF00586 AIR synthase related protein, N-terminal domain APH_0736 PF11967 Recombination protein O N terminal APH_0736 PF02565 Recombination protein O C terminal APH_0745 PF01565 FAD binding domain APH_0745 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APH_0746 PF03900 Porphobilinogen deaminase, C-terminal domain APH_0746 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APH_0747 PF08245 Mur ligase middle domain APH_0747 PF02875 Mur ligase family, glutamate ligase domain APH_0748 PF01425 Amidase APH_0749 PF02441 Flavoprotein APH_0754 PF01078 Magnesium chelatase, subunit ChlI APH_0754 PF13335 Magnesium chelatase, subunit ChlI C-terminal APH_0759 PF00140 Sigma-70 factor, region 1.2 APH_0759 PF04542 Sigma-70 region 2 APH_0759 PF04545 Sigma-70, region 4 APH_0765 PF00009 Elongation factor Tu GTP binding domain APH_0765 PF00679 Elongation factor G C-terminus APH_0765 PF03144 Elongation factor Tu domain 2 APH_0765 PF06421 GTP-binding protein LepA C-terminus APH_0767 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APH_0767 PF00575 S1 RNA binding domain APH_0767 PF03725 3' exoribonuclease family, domain 2 APH_0767 PF01138 3' exoribonuclease family, domain 1 APH_0767 PF00013 KH domain APH_0768 PF00312 Ribosomal protein S15 APH_0769 PF16198 tRNA pseudouridylate synthase B C-terminal domain APH_0769 PF01509 TruB family pseudouridylate synthase (N terminal domain) APH_0780 PF01121 Dephospho-CoA kinase APH_0782 PF01300 Telomere recombination APH_0782 PF03481 Putative GTP-binding controlling metal-binding APH_0783 PF09115 DNA polymerase III, delta subunit, C terminal APH_0790 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APH_0791 PF01467 Cytidylyltransferase-like APH_0794 PF04452 RNA methyltransferase APH_0795 PF00578 AhpC/TSA family APH_0796 PF00133 tRNA synthetases class I (I, L, M and V) APH_0796 PF08264 Anticodon-binding domain of tRNA APH_0801 PF12838 4Fe-4S dicluster domain APH_0802 PF10502 Signal peptidase, peptidase S26 APH_0803 PF01521 Iron-sulphur cluster biosynthesis APH_0813 PF00231 ATP synthase APH_0814 PF01227 GTP cyclohydrolase I APH_0830 PF01728 FtsJ-like methyltransferase APH_0848 PF08946 Osmosensory transporter coiled coil APH_0848 PF00083 Sugar (and other) transporter APH_0851 PF00490 Delta-aminolevulinic acid dehydratase APH_0852 PF02540 NAD synthase APH_0852 PF00795 Carbon-nitrogen hydrolase APH_0857 PF01624 MutS domain I APH_0857 PF05188 MutS domain II APH_0857 PF05192 MutS domain III APH_0857 PF00488 MutS domain V APH_0857 PF05190 MutS family domain IV APH_0860 PF01230 HIT domain APH_0863 PF16870 2-oxoglutarate dehydrogenase C-terminal APH_0863 PF00676 Dehydrogenase E1 component APH_0863 PF02779 Transketolase, pyrimidine binding domain APH_0863 PF16078 2-oxoglutarate dehydrogenase N-terminus APH_0867 PF10397 Adenylosuccinate lyase C-terminus APH_0867 PF00206 Lyase APH_0876 PF03099 Biotin/lipoate A/B protein ligase family APH_0876 PF08279 HTH domain APH_0876 PF02237 Biotin protein ligase C terminal domain APH_0880 PF04055 Radical SAM superfamily APH_0880 PF00919 Uncharacterized protein family UPF0004 APH_0883 PF00488 MutS domain V APH_0883 PF05192 MutS domain III APH_0883 PF05188 MutS domain II APH_0883 PF01624 MutS domain I APH_0883 PF05190 MutS family domain IV APH_0884 PF01541 GIY-YIG catalytic domain APH_0884 PF08459 UvrC Helix-hairpin-helix N-terminal APH_0893 PF00183 Hsp90 protein APH_0893 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_0897 PF00633 Helix-hairpin-helix motif APH_0897 PF00730 HhH-GPD superfamily base excision DNA repair protein APH_0899 PF00521 DNA gyrase/topoisomerase IV, subunit A APH_0899 PF03989 DNA gyrase C-terminal domain, beta-propeller APH_0903 PF13361 UvrD-like helicase C-terminal domain APH_0903 PF00580 UvrD/REP helicase N-terminal domain APH_0923 PF02600 Disulfide bond formation protein DsbB APH_0925 PF00471 Ribosomal protein L33 APH_0929 PF00550 Phosphopantetheine attachment site APH_0930 PF02801 Beta-ketoacyl synthase, C-terminal domain APH_0930 PF00109 Beta-ketoacyl synthase, N-terminal domain APH_0933 PF02481 DNA recombination-mediator protein A APH_0933 PF17782 DprA winged helix domain APH_0938 PF01617 Surface antigen APH_0939 PF08676 MutL C terminal dimerisation domain APH_0939 PF01119 DNA mismatch repair protein, C-terminal domain APH_0940 PF01618 MotA/TolQ/ExbB proton channel family APH_0944 PF00512 His Kinase A (phospho-acceptor) domain APH_0944 PF00989 PAS fold APH_0944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_0945 PF00202 Aminotransferase class-III APH_0955 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APH_0955 PF17854 FtsK alpha domain APH_0955 PF09397 Ftsk gamma domain APH_0955 PF01580 FtsK/SpoIIIE family APH_0957 PF03471 Transporter associated domain APH_0957 PF00571 CBS domain APH_0957 PF01595 Cyclin M transmembrane N-terminal domain APH_0960 PF02581 Thiamine monophosphate synthase APH_0961 PF03618 Kinase/pyrophosphorylase APH_0965 PF00551 Formyl transferase APH_0965 PF02911 Formyl transferase, C-terminal domain APH_0968 PF00004 ATPase family associated with various cellular activities (AAA) APH_0968 PF05362 Lon protease (S16) C-terminal proteolytic domain APH_0968 PF02190 ATP-dependent protease La (LON) substrate-binding domain APH_0969 PF06689 ClpX C4-type zinc finger APH_0969 PF10431 C-terminal, D2-small domain, of ClpB protein APH_0969 PF07724 AAA domain (Cdc48 subfamily) APH_0970 PF00574 Clp protease APH_0971 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APH_0971 PF05697 Bacterial trigger factor protein (TF) APH_0971 PF05698 Bacterial trigger factor protein (TF) C-terminus APH_0979 PF00155 Aminotransferase class I and II APH_0982 PF01297 Zinc-uptake complex component A periplasmic APH_0983 PF00005 ABC transporter APH_0984 PF03109 ABC1 family APH_0986 PF00005 ABC transporter APH_0986 PF08402 TOBE domain APH_0987 PF02416 mttA/Hcf106 family APH_0988 PF13662 Toprim domain APH_0988 PF02132 RecR protein APH_0989 PF01479 S4 domain APH_0989 PF00163 Ribosomal protein S4/S9 N-terminal domain APH_0993 PF02581 Thiamine monophosphate synthase APH_0993 PF08543 Phosphomethylpyrimidine kinase APH_0995 PF01594 AI-2E family transporter APH_0998 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APH_0999 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APH_1001 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APH_1003 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APH_1003 PF07733 Bacterial DNA polymerase III alpha NTPase domain APH_1003 PF02811 PHP domain APH_1003 PF14579 Helix-hairpin-helix motif APH_1008 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APH_1008 PF01243 Pyridoxamine 5'-phosphate oxidase APH_1010 PF02230 Phospholipase/Carboxylesterase APH_1012 PF01327 Polypeptide deformylase APH_1013 PF01180 Dihydroorotate dehydrogenase APH_1014 PF03309 Type III pantothenate kinase APH_1016 PF00155 Aminotransferase class I and II APH_1022 PF01351 Ribonuclease HII APH_1023 PF04983 RNA polymerase Rpb1, domain 3 APH_1023 PF05000 RNA polymerase Rpb1, domain 4 APH_1023 PF00623 RNA polymerase Rpb1, domain 2 APH_1023 PF04998 RNA polymerase Rpb1, domain 5 APH_1023 PF04997 RNA polymerase Rpb1, domain 1 APH_1024 PF04560 RNA polymerase Rpb2, domain 7 APH_1024 PF04561 RNA polymerase Rpb2, domain 2 APH_1024 PF10385 RNA polymerase beta subunit external 1 domain APH_1024 PF00562 RNA polymerase Rpb2, domain 6 APH_1024 PF04563 RNA polymerase beta subunit APH_1024 PF04565 RNA polymerase Rpb2, domain 3 APH_1025 PF00542 Ribosomal protein L7/L12 C-terminal domain APH_1026 PF00466 Ribosomal protein L10 APH_1027 PF00687 Ribosomal protein L1p/L10e family APH_1028 PF03946 Ribosomal protein L11, N-terminal domain APH_1028 PF00298 Ribosomal protein L11, RNA binding domain APH_1029 PF00467 KOW motif APH_1029 PF02357 Transcription termination factor nusG APH_1032 PF03143 Elongation factor Tu C-terminal domain APH_1032 PF03144 Elongation factor Tu domain 2 APH_1032 PF00009 Elongation factor Tu GTP binding domain APH_1033 PF03144 Elongation factor Tu domain 2 APH_1033 PF03764 Elongation factor G, domain IV APH_1033 PF14492 Elongation Factor G, domain II APH_1033 PF00009 Elongation factor Tu GTP binding domain APH_1033 PF00679 Elongation factor G C-terminus APH_1034 PF00177 Ribosomal protein S7p/S5e APH_1035 PF00164 Ribosomal protein S12/S23 APH_1036 PF17770 Ribonuclease J C-terminal domain APH_1036 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APH_1036 PF12706 Beta-lactamase superfamily domain APH_1037 PF07676 WD40-like Beta Propeller Repeat APH_1037 PF04052 TolB amino-terminal domain APH_1043 PF00529 HlyD membrane-fusion protein of T1SS APH_1045 PF00528 Binding-protein-dependent transport system inner membrane component APH_1048 PF03060 Nitronate monooxygenase APH_1049 PF02630 SCO1/SenC APH_1051 PF01165 Ribosomal protein S21 APH_1052 PF08442 ATP-grasp domain APH_1052 PF00549 CoA-ligase APH_1053 PF02629 CoA binding domain APH_1053 PF00549 CoA-ligase APH_1056 PF01171 PP-loop family APH_1058 PF00814 Glycoprotease family APH_1059 PF01411 tRNA synthetases class II (A) APH_1059 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APH_1060 PF00528 Binding-protein-dependent transport system inner membrane component APH_1070 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_1070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APH_1071 PF07497 Rho termination factor, RNA-binding domain APH_1071 PF07498 Rho termination factor, N-terminal domain APH_1071 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_1073 PF00227 Proteasome subunit APH_1074 PF00004 ATPase family associated with various cellular activities (AAA) APH_1074 PF07724 AAA domain (Cdc48 subfamily) APH_1074 PF10431 C-terminal, D2-small domain, of ClpB protein APH_1075 PF01209 ubiE/COQ5 methyltransferase family APH_1079 PF08264 Anticodon-binding domain of tRNA APH_1079 PF09334 tRNA synthetases class I (M) APH_1084 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APH_1084 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APH_1085 PF00115 Cytochrome C and Quinol oxidase polypeptide I APH_1086 PF01040 UbiA prenyltransferase family APH_1087 PF13525 Outer membrane lipoprotein APH_1088 PF02844 Phosphoribosylglycinamide synthetase, N domain APH_1088 PF02843 Phosphoribosylglycinamide synthetase, C domain APH_1088 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APH_1090 PF02699 Preprotein translocase subunit APH_1093 PF01171 PP-loop family APH_1095 PF00814 Glycoprotease family APH_1096 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APH_1096 PF01411 tRNA synthetases class II (A) APH_1097 PF00712 DNA polymerase III beta subunit, N-terminal domain APH_1097 PF02768 DNA polymerase III beta subunit, C-terminal domain APH_1097 PF02767 DNA polymerase III beta subunit, central domain APH_1099 PF00072 Response regulator receiver domain APH_1099 PF00486 Transcriptional regulatory protein, C terminal APH_1101 PF00719 Inorganic pyrophosphatase APH_1107 PF00380 Ribosomal protein S9/S16 APH_1108 PF00572 Ribosomal protein L13 APH_1111 PF10609 NUBPL iron-transfer P-loop NTPase APH_1112 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APH_1112 PF14572 Phosphoribosyl synthetase-associated domain APH_1113 PF02686 Glu-tRNAGln amidotransferase C subunit APH_1117 PF00694 Aconitase C-terminal domain APH_1117 PF00330 Aconitase family (aconitate hydratase) APH_1119 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APH_1119 PF02222 ATP-grasp domain APH_1120 PF04379 ApaG domain APH_1146 PF01145 SPFH domain / Band 7 family APH_1147 PF01145 SPFH domain / Band 7 family APH_1148 PF13180 PDZ domain APH_1149 PF14622 Ribonuclease-III-like APH_1149 PF00035 Double-stranded RNA binding motif APH_1150 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 APH_1159 PF00675 Insulinase (Peptidase family M16) APH_1159 PF05193 Peptidase M16 inactive domain APH_1160 PF01252 Signal peptidase (SPase) II APH_1161 PF06574 FAD synthetase APH_1161 PF01687 Riboflavin kinase APH_1162 PF00462 Glutaredoxin APH_1164 PF02491 SHS2 domain inserted in FTSA APH_1165 PF02272 DHHA1 domain APH_1165 PF17768 RecJ OB domain APH_1165 PF10141 Single-strand DNA-specific exonuclease, C terminal domain APH_1165 PF01368 DHH family APH_1166 PF00180 Isocitrate/isopropylmalate dehydrogenase APH_1166 PF18324 Hypothetical protein TT1725 APH_1171 PF02104 SURF1 family APH_1173 PF00156 Phosphoribosyl transferase domain APH_1174 PF00899 ThiF family APH_1175 PF00462 Glutaredoxin APH_1178 PF02810 SEC-C motif APH_1178 PF01043 SecA preprotein cross-linking domain APH_1178 PF07517 SecA DEAD-like domain APH_1178 PF07516 SecA Wing and Scaffold domain APH_1179 PF00004 ATPase family associated with various cellular activities (AAA) APH_1179 PF01434 Peptidase family M41 APH_1179 PF17862 AAA+ lid domain APH_1179 PF06480 FtsH Extracellular APH_1180 PF01171 PP-loop family APH_1182 PF02386 Cation transport protein APH_1183 PF02491 SHS2 domain inserted in FTSA APH_1185 PF01617 Surface antigen APH_1191 PF00137 ATP synthase subunit C APH_1192 PF00119 ATP synthase A chain APH_1193 PF13685 Iron-containing alcohol dehydrogenase APH_1197 PF00132 Bacterial transferase hexapeptide (six repeats) APH_1198 PF02817 e3 binding domain APH_1198 PF00364 Biotin-requiring enzyme APH_1198 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APH_1199 PF00557 Metallopeptidase family M24 APH_1200 PF17827 PrmC N-terminal domain APH_1200 PF13847 Methyltransferase domain APH_1204 PF01578 Cytochrome C assembly protein APH_1204 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APH_1205 PF00115 Cytochrome C and Quinol oxidase polypeptide I APH_1206 PF01066 CDP-alcohol phosphatidyltransferase APH_1207 PF02142 MGS-like domain APH_1207 PF01808 AICARFT/IMPCHase bienzyme APH_1208 PF07977 FabA-like domain APH_1210 PF07244 Surface antigen variable number repeat APH_1210 PF01103 Surface antigen APH_1211 PF17820 PDZ domain APH_1211 PF02163 Peptidase family M50 APH_1214 PF00768 D-alanyl-D-alanine carboxypeptidase APH_1214 PF07943 Penicillin-binding protein 5, C-terminal domain APH_1216 PF13735 tRNA nucleotidyltransferase domain 2 putative APH_1216 PF01743 Poly A polymerase head domain APH_1216 PF12627 Probable RNA and SrmB- binding site of polymerase A APH_1217 PF00334 Nucleoside diphosphate kinase APH_1218 PF01381 Helix-turn-helix APH_1223 PF00154 recA bacterial DNA recombination protein APH_1224 PF08264 Anticodon-binding domain of tRNA APH_1224 PF00133 tRNA synthetases class I (I, L, M and V) APH_1227 PF02881 SRP54-type protein, helical bundle domain APH_1227 PF00448 SRP54-type protein, GTPase domain APH_1232 PF00285 Citrate synthase, C-terminal domain APH_1233 PF00117 Glutamine amidotransferase class-I APH_1233 PF00958 GMP synthase C terminal domain APH_1240 PF01617 Surface antigen APH_1243 PF00155 Aminotransferase class I and II APH_1244 PF00579 tRNA synthetases class I (W and Y) APH_1246 PF00120 Glutamine synthetase, catalytic domain APH_1246 PF03951 Glutamine synthetase, beta-Grasp domain APH_1247 PF00348 Polyprenyl synthetase APH_1257 PF02817 e3 binding domain APH_1257 PF00364 Biotin-requiring enzyme APH_1257 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APH_1258 PF01791 DeoC/LacD family aldolase APH_1263 PF05198 Translation initiation factor IF-3, N-terminal domain APH_1263 PF00707 Translation initiation factor IF-3, C-terminal domain APH_1264 PF03129 Anticodon binding domain APH_1264 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APH_1264 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APH_1265 PF02464 Competence-damaged protein APH_1265 PF00994 Probable molybdopterin binding domain APH_1265 PF18146 Damage-inducible protein CinA KH domain APH_1266 PF01245 Ribosomal protein L19 APH_1267 PF01746 tRNA (Guanine-1)-methyltransferase APH_1268 PF01782 RimM N-terminal domain APH_1271 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APH_1271 PF01578 Cytochrome C assembly protein APH_1276 PF02542 YgbB family APH_1277 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APH_1277 PF02542 YgbB family APH_1279 PF00731 AIR carboxylase APH_1281 PF00216 Bacterial DNA-binding protein APH_1282 PF13411 MerR HTH family regulatory protein APH_1285 PF01926 50S ribosome-binding GTPase APH_1285 PF06071 Protein of unknown function (DUF933) APH_1288 PF01926 50S ribosome-binding GTPase APH_1288 PF10396 GTP-binding protein TrmE N-terminus APH_1288 PF12631 MnmE helical domain APH_1290 PF02130 Uncharacterized protein family UPF0054 APH_1292 PF00091 Tubulin/FtsZ family, GTPase domain APH_1292 PF12327 FtsZ family, C-terminal domain APH_1294 PF02075 Crossover junction endodeoxyribonuclease RuvC APH_1297 PF04127 DNA / pantothenate metabolism flavoprotein APH_1297 PF02441 Flavoprotein APH_1298 PF00270 DEAD/DEAH box helicase APH_1298 PF00271 Helicase conserved C-terminal domain APH_1298 PF17191 RecG wedge domain APH_1299 PF01370 NAD dependent epimerase/dehydratase family APH_1300 PF13537 Glutamine amidotransferase domain APH_1300 PF00156 Phosphoribosyl transferase domain APH_1301 PF01195 Peptidyl-tRNA hydrolase APH_1302 PF14693 Ribosomal protein TL5, C-terminal domain APH_1302 PF01386 Ribosomal L25p family APH_1303 PF00156 Phosphoribosyl transferase domain APH_1305 PF00999 Sodium/hydrogen exchanger family APH_1305 PF02254 TrkA-N domain APH_1308 PF02779 Transketolase, pyrimidine binding domain APH_1308 PF02780 Transketolase, C-terminal domain APH_1310 PF01523 Putative modulator of DNA gyrase APH_1314 PF00925 GTP cyclohydrolase II APH_1319 PF00925 GTP cyclohydrolase II APH_1321 PF00162 Phosphoglycerate kinase APH_1322 PF02601 Exonuclease VII, large subunit APH_1322 PF13742 OB-fold nucleic acid binding domain APH_1326 PF07549 SecD/SecF GG Motif APH_1326 PF02355 Protein export membrane protein APH_1331 PF01668 SmpB protein APH_1332 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APH_1332 PF00925 GTP cyclohydrolase II APH_1333 PF03449 Transcription elongation factor, N-terminal APH_1333 PF01272 Transcription elongation factor, GreA/GreB, C-term APH_1334 PF00306 ATP synthase alpha/beta chain, C terminal domain APH_1334 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_1334 PF02874 ATP synthase alpha/beta family, beta-barrel domain APH_1335 PF00213 ATP synthase delta (OSCP) subunit APH_1341 PF02687 FtsX-like permease family APH_1341 PF12704 MacB-like periplasmic core domain APH_1344 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APH_1345 PF01027 Inhibitor of apoptosis-promoting Bax1 APH_1346 PF02774 Semialdehyde dehydrogenase, dimerisation domain APH_1346 PF01118 Semialdehyde dehydrogenase, NAD binding domain APH_1348 PF12169 DNA polymerase III subunits gamma and tau domain III APH_1349 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APH_1349 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APH_1354 PF00154 recA bacterial DNA recombination protein APH_1360 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APH_1366 PF02355 Protein export membrane protein APH_1367 PF17757 UvrB interaction domain APH_1367 PF12344 Ultra-violet resistance protein B APH_1367 PF02151 UvrB/uvrC motif APH_1367 PF04851 Type III restriction enzyme, res subunit APH_1367 PF00271 Helicase conserved C-terminal domain APH_1372 PF01327 Polypeptide deformylase APH_1373 PF01553 Acyltransferase APH_1374 PF01649 Ribosomal protein S20 APH_1375 PF01327 Polypeptide deformylase APH_1376 PF01790 Prolipoprotein diacylglyceryl transferase APH_1377 PF03023 Lipid II flippase MurJ APH_1395 PF01545 Cation efflux family APH_1398 PF01258 Prokaryotic dksA/traR C4-type zinc finger APH_1402 PF02534 Type IV secretory system Conjugative DNA transfer APH_1403 PF00437 Type II/IV secretion system protein APH_1404 PF03743 Bacterial conjugation TrbI-like protein APH_1409 PF02463 RecF/RecN/SMC N terminal domain