APH_0001 PF00476 DNA polymerase family A APH_0001 PF01367 5'-3' exonuclease, C-terminal SAM fold APH_0001 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APH_0002 PF00834 Ribulose-phosphate 3 epimerase family APH_0003 PF02405 APH_0003 APH_0004 PF00005 ABC transporter APH_0006 PF01965 DJ-1/PfpI family APH_0007 PF00438 S-adenosylmethionine synthetase, N-terminal domain APH_0007 PF02772 S-adenosylmethionine synthetase, central domain APH_0007 PF02773 S-adenosylmethionine synthetase, C-terminal domain APH_0009 PF01494 FAD binding domain APH_0013 PF02091 Glycyl-tRNA synthetase alpha subunit APH_0014 PF02092 APH_0014 APH_0014 PF05746 DALR anticodon binding domain APH_0015 PF00226 DnaJ domain APH_0015 PF00684 DnaJ central domain APH_0015 PF01556 DnaJ C terminal domain APH_0016 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APH_0016 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APH_0017 PF02660 APH_0017 APH_0018 PF02075 Crossover junction endodeoxyribonuclease RuvC APH_0019 PF00510 Cytochrome c oxidase subunit III APH_0020 PF01208 Uroporphyrinogen decarboxylase (URO-D) APH_0021 PF00571 CBS domain APH_0021 PF03471 Transporter associated domain APH_0022 PF04586 APH_0022 APH_0023 PF04860 Phage portal protein APH_0025 PF08241 Methyltransferase domain APH_0026 PF02445 Quinolinate synthetase A protein APH_0027 PF00037 4Fe-4S binding domain APH_0027 PF11953 Domain of unknown function (DUF3470) APH_0029 PF01617 APH_0029 APH_0030 PF01617 APH_0030 APH_0035 PF00579 tRNA synthetases class I (W and Y) APH_0036 PF01025 GrpE APH_0037 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APH_0037 PF01872 RibD C-terminal domain APH_0038 PF00117 Glutamine amidotransferase class-I APH_0038 PF06418 CTP synthase N-terminus APH_0039 PF03840 Preprotein translocase SecG subunit APH_0040 PF00589 Phage integrase family APH_0040 PF02899 Phage integrase, N-terminal SAM-like domain APH_0041 PF00005 ABC transporter APH_0042 PF00390 Malic enzyme, N-terminal domain APH_0042 PF01515 Phosphate acetyl/butaryl transferase APH_0042 PF03949 Malic enzyme, NAD binding domain APH_0043 PF13502 APH_0043 APH_0044 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APH_0044 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APH_0045 PF02470 APH_0045 APH_0046 PF05071 APH_0046 APH_0047 PF03477 ATP cone domain APH_0051 PF13343 Bacterial extracellular solute-binding protein APH_0052 PF03966 Trm112p-like protein APH_0053 PF00083 Sugar (and other) transporter APH_0054 PF00886 Ribosomal protein S16 APH_0056 PF00106 short chain dehydrogenase APH_0058 PF00438 S-adenosylmethionine synthetase, N-terminal domain APH_0058 PF02772 S-adenosylmethionine synthetase, central domain APH_0058 PF02773 S-adenosylmethionine synthetase, C-terminal domain APH_0059 PF01409 tRNA synthetases class II core domain (F) APH_0059 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APH_0060 PF00453 Ribosomal protein L20 APH_0061 PF01632 Ribosomal protein L35 APH_0062 PF06242 APH_0062 APH_0064 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_0064 PF07497 Rho termination factor, RNA-binding domain APH_0064 PF07498 Rho termination factor, N-terminal domain APH_0065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APH_0065 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_0066 PF00226 DnaJ domain APH_0067 PF01106 NifU-like domain APH_0067 PF08712 Scaffold protein Nfu/NifU N terminal APH_0069 PF02597 ThiS family APH_0070 PF05690 Thiazole biosynthesis protein ThiG APH_0072 PF00749 tRNA synthetases class I (E and Q), catalytic domain APH_0075 PF03602 Conserved hypothetical protein 95 APH_0077 PF03547 APH_0077 APH_0078 PF04800 ETC complex I subunit conserved region APH_0079 PF02609 Exonuclease VII small subunit APH_0080 PF00085 Thioredoxin APH_0081 PF03524 Conjugal transfer protein APH_0082 PF00676 Dehydrogenase E1 component APH_0083 PF00561 alpha/beta hydrolase fold APH_0087 PF00551 Formyl transferase APH_0088 PF00478 IMP dehydrogenase / GMP reductase domain APH_0088 PF00571 CBS domain APH_0089 PF01513 ATP-NAD kinase APH_0090 PF01197 Ribosomal protein L31 APH_0091 PF04860 Phage portal protein APH_0092 PF00698 Acyl transferase domain APH_0093 PF02223 Thymidylate kinase APH_0094 PF07690 Major Facilitator Superfamily APH_0096 PF04280 Tim44-like domain APH_0097 PF02556 Preprotein translocase subunit SecB APH_0098 PF13462 Thioredoxin APH_0101 PF00675 Insulinase (Peptidase family M16) APH_0101 PF05193 Peptidase M16 inactive domain APH_0103 PF03060 Nitronate monooxygenase APH_0106 PF00677 Lumazine binding domain APH_0107 PF00270 DEAD/DEAH box helicase APH_0107 PF00271 Helicase conserved C-terminal domain APH_0107 PF02559 CarD-like/TRCF domain APH_0107 PF03461 TRCF domain APH_0109 PF00075 RNase H APH_0110 PF13116 APH_0110 APH_0110 PF13502 APH_0110 APH_0111 PF00696 Amino acid kinase family APH_0112 PF01765 Ribosome recycling factor APH_0113 PF01148 Cytidylyltransferase family APH_0119 PF01259 SAICAR synthetase APH_0120 PF03129 Anticodon binding domain APH_0120 PF13393 Histidyl-tRNA synthetase APH_0122 PF13462 Thioredoxin APH_0123 PF02628 APH_0123 APH_0125 PF00005 ABC transporter APH_0129 PF12327 FtsZ family, C-terminal domain APH_0131 PF06808 APH_0131 APH_0135 PF00313 'Cold-shock' DNA-binding domain APH_0136 PF00512 His Kinase A (phospho-acceptor) domain APH_0136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_0137 PF01612 3'-5' exonuclease APH_0138 PF00533 BRCA1 C Terminus (BRCT) domain APH_0138 PF01653 NAD-dependent DNA ligase adenylation domain APH_0138 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APH_0138 PF03120 NAD-dependent DNA ligase OB-fold domain APH_0138 PF12826 Helix-hairpin-helix motif APH_0139 PF00462 Glutaredoxin APH_0140 PF01722 BolA-like protein APH_0141 PF08534 Redoxin APH_0142 PF01617 APH_0142 APH_0144 PF01617 APH_0144 APH_0145 PF01617 APH_0145 APH_0147 PF00625 Guanylate kinase APH_0149 PF06808 APH_0149 APH_0149 PF11874 APH_0149 APH_0150 PF02674 APH_0150 APH_0151 PF01250 Ribosomal protein S6 APH_0152 PF01084 Ribosomal protein S18 APH_0153 PF01281 Ribosomal protein L9, N-terminal domain APH_0153 PF03948 Ribosomal protein L9, C-terminal domain APH_0154 PF00464 Serine hydroxymethyltransferase APH_0156 PF01491 Frataxin-like domain APH_0157 PF00005 ABC transporter APH_0157 PF00664 ABC transporter transmembrane region APH_0158 PF00890 FAD binding domain APH_0158 PF02910 Fumarate reductase flavoprotein C-term APH_0159 PF13085 2Fe-2S iron-sulfur cluster binding domain APH_0159 PF13534 4Fe-4S dicluster domain APH_0161 PF00890 FAD binding domain APH_0161 PF02910 Fumarate reductase flavoprotein C-term APH_0162 PF13085 2Fe-2S iron-sulfur cluster binding domain APH_0162 PF13534 4Fe-4S dicluster domain APH_0163 PF02511 Thymidylate synthase complementing protein APH_0164 PF07690 Major Facilitator Superfamily APH_0165 PF02091 Glycyl-tRNA synthetase alpha subunit APH_0166 PF05491 Holliday junction DNA helicase ruvB C-terminus APH_0166 PF05496 Holliday junction DNA helicase ruvB N-terminus APH_0167 PF01330 RuvA N terminal domain APH_0167 PF07499 RuvA, C-terminal domain APH_0167 PF14520 Helix-hairpin-helix domain APH_0168 PF01578 APH_0168 APH_0170 PF00625 Guanylate kinase APH_0171 PF01617 APH_0171 APH_0172 PF01617 APH_0172 APH_0174 PF01617 APH_0174 APH_0175 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APH_0175 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APH_0178 PF12146 Putative lysophospholipase APH_0179 PF00561 alpha/beta hydrolase fold APH_0180 PF00034 Cytochrome c APH_0181 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APH_0185 PF00391 PEP-utilising enzyme, mobile domain APH_0185 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APH_0185 PF02896 PEP-utilising enzyme, TIM barrel domain APH_0187 PF13419 Haloacid dehalogenase-like hydrolase APH_0190 PF00152 tRNA synthetases class II (D, K and N) APH_0190 PF01336 OB-fold nucleic acid binding domain APH_0190 PF02938 GAD domain APH_0192 PF04972 BON domain APH_0193 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APH_0193 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APH_0195 PF03799 Cell division protein FtsQ APH_0195 PF08478 POTRA domain, FtsQ-type APH_0196 PF00072 Response regulator receiver domain APH_0196 PF00158 Sigma-54 interaction domain APH_0196 PF02954 Bacterial regulatory protein, Fis family APH_0198 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APH_0198 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APH_0200 PF00589 Phage integrase family APH_0200 PF02899 Phage integrase, N-terminal SAM-like domain APH_0202 PF00586 AIR synthase related protein, N-terminal domain APH_0202 PF02769 AIR synthase related protein, C-terminal domain APH_0203 PF10090 Uncharacterized protein conserved in bacteria (DUF2328) APH_0206 PF00990 GGDEF domain APH_0207 PF02410 Oligomerisation domain APH_0208 PF01435 Peptidase family M48 APH_0210 PF00586 AIR synthase related protein, N-terminal domain APH_0210 PF02769 AIR synthase related protein, C-terminal domain APH_0212 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APH_0213 PF00586 AIR synthase related protein, N-terminal domain APH_0213 PF02769 AIR synthase related protein, C-terminal domain APH_0218 PF04055 Radical SAM superfamily APH_0218 PF06968 Biotin and Thiamin Synthesis associated domain APH_0220 PF07310 APH_0220 APH_0221 PF01551 Peptidase family M23 APH_0222 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APH_0224 PF01134 Glucose inhibited division protein A APH_0224 PF13932 GidA associated domain 3 APH_0225 PF13507 CobB/CobQ-like glutamine amidotransferase domain APH_0226 PF01617 APH_0226 APH_0230 PF00551 Formyl transferase APH_0231 PF00883 Cytosol aminopeptidase family, catalytic domain APH_0231 PF02789 Cytosol aminopeptidase family, N-terminal domain APH_0232 PF00775 Dioxygenase APH_0235 PF00004 ATPase family associated with various cellular activities (AAA) APH_0235 PF02861 Clp amino terminal domain APH_0235 PF07724 AAA domain (Cdc48 subfamily) APH_0235 PF10431 C-terminal, D2-small domain, of ClpB protein APH_0236 PF00106 short chain dehydrogenase APH_0240 PF00118 TCP-1/cpn60 chaperonin family APH_0241 PF00166 Chaperonin 10 Kd subunit APH_0242 PF04002 RadC-like JAB domain APH_0243 PF03099 Biotin/lipoate A/B protein ligase family APH_0245 PF01979 Amidohydrolase family APH_0246 PF04127 DNA / pantothenate metabolism flavoprotein APH_0247 PF00206 Lyase APH_0247 PF10415 Fumarase C C-terminus APH_0249 PF02142 MGS-like domain APH_0249 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APH_0249 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APH_0250 PF08264 Anticodon-binding domain of tRNA APH_0254 PF00809 Pterin binding enzyme APH_0256 PF00005 ABC transporter APH_0256 PF00664 ABC transporter transmembrane region APH_0257 PF00107 Zinc-binding dehydrogenase APH_0257 PF08240 Alcohol dehydrogenase GroES-like domain APH_0258 PF00580 UvrD/REP helicase N-terminal domain APH_0258 PF13361 UvrD-like helicase C-terminal domain APH_0259 PF13637 Ankyrin repeats (many copies) APH_0260 PF01145 SPFH domain / Band 7 family APH_0262 PF03969 AFG1-like ATPase APH_0263 PF00762 Ferrochelatase APH_0266 PF05164 Cell division protein ZapA APH_0267 PF13747 APH_0267 APH_0268 PF00456 Transketolase, thiamine diphosphate binding domain APH_0271 PF00216 Bacterial DNA-binding protein APH_0272 PF01343 Peptidase family S49 APH_0273 PF00575 S1 RNA binding domain APH_0274 PF02224 Cytidylate kinase APH_0275 PF00588 SpoU rRNA Methylase family APH_0275 PF08032 RNA 2'-O ribose methyltransferase substrate binding APH_0278 PF00009 Elongation factor Tu GTP binding domain APH_0278 PF03143 Elongation factor Tu C-terminal domain APH_0278 PF03144 Elongation factor Tu domain 2 APH_0279 PF00338 Ribosomal protein S10p/S20e APH_0280 PF00297 Ribosomal protein L3 APH_0281 PF00573 Ribosomal protein L4/L1 family APH_0282 PF00276 Ribosomal protein L23 APH_0283 PF00181 Ribosomal Proteins L2, RNA binding domain APH_0283 PF03947 Ribosomal Proteins L2, C-terminal domain APH_0284 PF00203 Ribosomal protein S19 APH_0285 PF00237 Ribosomal protein L22p/L17e APH_0286 PF00189 Ribosomal protein S3, C-terminal domain APH_0286 PF07650 KH domain APH_0287 PF00252 Ribosomal protein L16p/L10e APH_0288 PF00831 Ribosomal L29 protein APH_0289 PF00366 Ribosomal protein S17 APH_0290 PF00238 Ribosomal protein L14p/L23e APH_0291 PF00467 KOW motif APH_0291 PF17136 APH_0291 APH_0292 PF00281 Ribosomal protein L5 APH_0292 PF00673 ribosomal L5P family C-terminus APH_0293 PF00253 Ribosomal protein S14p/S29e APH_0294 PF00410 Ribosomal protein S8 APH_0295 PF00347 Ribosomal protein L6 APH_0296 PF00861 Ribosomal L18p/L5e family APH_0297 PF00333 Ribosomal protein S5, N-terminal domain APH_0297 PF03719 Ribosomal protein S5, C-terminal domain APH_0298 PF00828 Ribosomal protein L18e/L15 APH_0299 PF00344 SecY translocase APH_0300 PF00406 Adenylate kinase APH_0301 PF00416 Ribosomal protein S13/S18 APH_0302 PF00411 Ribosomal protein S11 APH_0303 PF01000 RNA polymerase Rpb3/RpoA insert domain APH_0303 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APH_0303 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APH_0304 PF01196 Ribosomal protein L17 APH_0305 PF01588 Putative tRNA binding domain APH_0305 PF03147 Ferredoxin-fold anticodon binding domain APH_0305 PF03483 B3/4 domain APH_0305 PF03484 tRNA synthetase B5 domain APH_0306 PF03772 APH_0306 APH_0306 PF13567 APH_0306 APH_0307 PF01235 APH_0307 APH_0308 PF00825 Ribonuclease P APH_0309 PF00468 Ribosomal protein L34 APH_0310 PF01040 UbiA prenyltransferase family APH_0311 PF01613 Flavin reductase like domain APH_0313 PF00005 ABC transporter APH_0314 PF01702 Queuine tRNA-ribosyltransferase APH_0315 PF01783 Ribosomal L32p protein family APH_0316 PF02504 Fatty acid synthesis protein APH_0317 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APH_0317 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APH_0318 PF01617 APH_0318 APH_0321 PF14437 APH_0321 APH_0323 PF00772 DnaB-like helicase N terminal domain APH_0323 PF03796 DnaB-like helicase C terminal domain APH_0325 PF01266 FAD dependent oxidoreductase APH_0329 PF00348 Polyprenyl synthetase APH_0331 PF00317 Ribonucleotide reductase, all-alpha domain APH_0331 PF02867 Ribonucleotide reductase, barrel domain APH_0332 PF03652 Uncharacterised protein family (UPF0081) APH_0336 PF00709 Adenylosuccinate synthetase APH_0338 PF00691 OmpA family APH_0339 PF02074 Carboxypeptidase Taq (M32) metallopeptidase APH_0340 PF00456 Transketolase, thiamine diphosphate binding domain APH_0340 PF02779 Transketolase, pyrimidine binding domain APH_0340 PF02780 Transketolase, C-terminal domain APH_0341 PF04066 APH_0341 APH_0342 PF03334 APH_0342 APH_0344 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APH_0345 PF10150 Ribonuclease E/G family APH_0346 PF00012 Hsp70 protein APH_0347 PF03364 Polyketide cyclase / dehydrase and lipid transport APH_0348 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APH_0349 PF00448 SRP54-type protein, GTPase domain APH_0349 PF02881 SRP54-type protein, helical bundle domain APH_0349 PF02978 Signal peptide binding domain APH_0350 PF01926 50S ribosome-binding GTPase APH_0350 PF07650 KH domain APH_0351 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB APH_0352 PF13975 APH_0352 APH_0353 PF00557 Metallopeptidase family M24 APH_0353 PF01321 Creatinase/Prolidase N-terminal domain APH_0353 PF16188 APH_0353 APH_0353 PF16189 APH_0353 APH_0354 PF02602 Uroporphyrinogen-III synthase HemD APH_0355 PF07722 Peptidase C26 APH_0356 PF00270 DEAD/DEAH box helicase APH_0356 PF00271 Helicase conserved C-terminal domain APH_0359 PF00830 Ribosomal L28 family APH_0362 PF00849 RNA pseudouridylate synthase APH_0364 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain APH_0364 PF00364 Biotin-requiring enzyme APH_0364 PF02785 Biotin carboxylase C-terminal domain APH_0364 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APH_0367 PF04055 Radical SAM superfamily APH_0370 PF00528 Binding-protein-dependent transport system inner membrane component APH_0370 PF11812 APH_0370 APH_0371 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APH_0371 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APH_0372 PF05101 APH_0372 APH_0373 PF03135 APH_0373 APH_0374 PF04610 APH_0374 APH_0375 PF04610 APH_0375 APH_0376 PF04610 APH_0376 APH_0377 PF04610 APH_0377 APH_0378 PF09343 APH_0378 APH_0379 PF00692 dUTPase APH_0380 PF02401 LytB protein APH_0381 PF00117 Glutamine amidotransferase class-I APH_0381 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APH_0389 PF01676 Metalloenzyme superfamily APH_0389 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APH_0390 PF01926 50S ribosome-binding GTPase APH_0390 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APH_0392 PF13360 PQQ-like domain APH_0393 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APH_0393 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_0394 PF16576 APH_0394 APH_0395 PF01176 Translation initiation factor 1A / IF-1 APH_0396 PF02545 Maf-like protein APH_0397 PF00318 Ribosomal protein S2 APH_0398 PF00889 Elongation factor TS APH_0399 PF00950 APH_0399 APH_0401 PF00355 Rieske [2Fe-2S] domain APH_0402 PF00032 Cytochrome b(C-terminal)/b6/petD APH_0402 PF00033 Cytochrome b(N-terminal)/b6/petB APH_0403 PF02167 Cytochrome C1 family APH_0404 PF13609 Gram-negative porin APH_0406 PF13609 Gram-negative porin APH_0408 PF00749 tRNA synthetases class I (E and Q), catalytic domain APH_0411 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APH_0411 PF06827 Zinc finger found in FPG and IleRS APH_0411 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APH_0412 PF01134 Glucose inhibited division protein A APH_0412 PF13932 GidA associated domain 3 APH_0415 PF01039 Carboxyl transferase domain APH_0420 PF00472 RF-1 domain APH_0420 PF03462 PCRF domain APH_0421 PF01926 50S ribosome-binding GTPase APH_0422 PF00696 Amino acid kinase family APH_0423 PF01218 Coproporphyrinogen III oxidase APH_0424 PF00375 Sodium:dicarboxylate symporter family APH_0427 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APH_0427 PF02403 Seryl-tRNA synthetase N-terminal domain APH_0428 PF02646 APH_0428 APH_0431 PF01715 IPP transferase APH_0434 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APH_0434 PF10531 SLBB domain APH_0434 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APH_0435 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APH_0436 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APH_0437 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APH_0437 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APH_0438 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APH_0439 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APH_0440 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APH_0440 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal APH_0440 PF13288 DXP reductoisomerase C-terminal domain APH_0442 PF04551 GcpE protein APH_0443 PF00902 Sec-independent protein translocase protein (TatC) APH_0444 PF00873 AcrB/AcrD/AcrF family APH_0445 PF08529 NusA N-terminal domain APH_0445 PF13184 NusA-like KH domain APH_0445 PF14520 Helix-hairpin-helix domain APH_0446 PF00009 Elongation factor Tu GTP binding domain APH_0446 PF04760 Translation initiation factor IF-2, N-terminal region APH_0446 PF11987 Translation-initiation factor 2 APH_0447 PF02033 Ribosome-binding factor A APH_0449 PF03741 APH_0449 APH_0450 PF00004 ATPase family associated with various cellular activities (AAA) APH_0450 PF07724 AAA domain (Cdc48 subfamily) APH_0450 PF10431 C-terminal, D2-small domain, of ClpB protein APH_0451 PF00009 Elongation factor Tu GTP binding domain APH_0451 PF00679 Elongation factor G C-terminus APH_0451 PF03144 Elongation factor Tu domain 2 APH_0462 PF02637 GatB domain APH_0465 PF00436 Single-strand binding protein family APH_0468 PF00472 RF-1 domain APH_0468 PF03462 PCRF domain APH_0469 PF05292 Malonyl-CoA decarboxylase (MCD) APH_0469 PF17408 APH_0469 APH_0470 PF02637 GatB domain APH_0470 PF02934 GatB/GatE catalytic domain APH_0471 PF03372 Endonuclease/Exonuclease/phosphatase family APH_0473 PF13561 Enoyl-(Acyl carrier protein) reductase APH_0474 PF00308 Bacterial dnaA protein APH_0474 PF08299 Bacterial dnaA protein helix-turn-helix APH_0474 PF11638 DnaA N-terminal domain APH_0478 PF02637 GatB domain APH_0480 PF01709 Transcriptional regulator APH_0481 PF03631 APH_0481 APH_0482 PF00202 Aminotransferase class-III APH_0492 PF00923 Transaldolase APH_0493 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APH_0494 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_0494 PF02874 ATP synthase alpha/beta family, beta-barrel domain APH_0496 PF00571 CBS domain APH_0496 PF01769 Divalent cation transporter APH_0496 PF03448 MgtE intracellular N domain APH_0502 PF01416 tRNA pseudouridine synthase APH_0503 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APH_0503 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APH_0504 PF01728 FtsJ-like methyltransferase APH_0505 PF03372 Endonuclease/Exonuclease/phosphatase family APH_0508 PF00444 Ribosomal protein L36 APH_0511 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APH_0513 PF01713 Smr domain APH_0514 PF01192 RNA polymerase Rpb6 APH_0515 PF13744 Helix-turn-helix domain APH_0519 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APH_0520 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APH_0521 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APH_0524 PF01975 Survival protein SurE APH_0526 PF03100 CcmE APH_0527 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APH_0528 PF01026 TatD related DNase APH_0530 PF01026 TatD related DNase APH_0534 PF00133 tRNA synthetases class I (I, L, M and V) APH_0534 PF08264 Anticodon-binding domain of tRNA APH_0534 PF09334 tRNA synthetases class I (M) APH_0534 PF13603 Leucyl-tRNA synthetase, Domain 2 APH_0538 PF01029 NusB family APH_0539 PF00885 6,7-dimethyl-8-ribityllumazine synthase APH_0540 PF02096 60Kd inner membrane protein APH_0540 PF14849 YidC periplasmic domain APH_0541 PF02096 60Kd inner membrane protein APH_0541 PF14849 YidC periplasmic domain APH_0542 PF00384 Molybdopterin oxidoreductase APH_0543 PF01066 CDP-alcohol phosphatidyltransferase APH_0543 PF08009 APH_0543 APH_0544 PF02666 APH_0544 APH_0545 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_0547 PF01132 Elongation factor P (EF-P) OB domain APH_0547 PF08207 Elongation factor P (EF-P) KOW-like domain APH_0547 PF09285 Elongation factor P, C-terminal APH_0548 PF00459 Inositol monophosphatase family APH_0549 PF00849 RNA pseudouridylate synthase APH_0551 PF00072 Response regulator receiver domain APH_0551 PF00990 GGDEF domain APH_0552 PF02416 mttA/Hcf106 family APH_0553 PF05088 APH_0553 APH_0554 PF06055 APH_0554 APH_0555 PF01406 tRNA synthetases class I (C) catalytic domain APH_0555 PF09190 DALR domain APH_0560 PF00268 Ribonucleotide reductase, small chain APH_0561 PF00578 AhpC/TSA family APH_0565 PF11020 APH_0565 APH_0566 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase APH_0571 PF01807 CHC2 zinc finger APH_0571 PF08275 DNA primase catalytic core, N-terminal domain APH_0571 PF13662 Toprim domain APH_0572 PF00488 MutS domain V APH_0574 PF00288 GHMP kinases N terminal domain APH_0574 PF08544 GHMP kinases C terminal APH_0575 PF01207 Dihydrouridine synthase (Dus) APH_0576 PF00140 Sigma-70 factor, region 1 APH_0576 PF03979 Sigma-70 factor, region 1 APH_0576 PF04539 Sigma-70 region 3 APH_0576 PF04542 Sigma-70 region 2 APH_0576 PF04545 Sigma-70, region 4 APH_0576 PF04546 Sigma-70, non-essential region APH_0581 PF03091 CutA1 divalent ion tolerance protein APH_0582 PF00072 Response regulator receiver domain APH_0582 PF00512 His Kinase A (phospho-acceptor) domain APH_0582 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_0584 PF01596 O-methyltransferase APH_0586 PF13667 ThiC-associated domain APH_0588 PF01256 Carbohydrate kinase APH_0588 PF03853 YjeF-related protein N-terminus APH_0597 PF01131 DNA topoisomerase APH_0597 PF01396 APH_0597 APH_0597 PF01751 Toprim domain APH_0597 PF13368 APH_0597 APH_0600 PF01964 ThiC family APH_0600 PF13667 ThiC-associated domain APH_0606 PF13489 Methyltransferase domain APH_0607 PF01921 tRNA synthetases class I (K) APH_0608 PF13145 PPIC-type PPIASE domain APH_0608 PF13624 SurA N-terminal domain APH_0610 PF00814 Glycoprotease family APH_0611 PF00375 Sodium:dicarboxylate symporter family APH_0612 PF00375 Sodium:dicarboxylate symporter family APH_0614 PF04085 rod shape-determining protein MreC APH_0617 PF05258 APH_0617 APH_0622 PF00398 Ribosomal RNA adenine dimethylase APH_0624 PF00121 Triosephosphate isomerase APH_0625 PF16868 APH_0625 APH_0626 PF00814 Glycoprotease family APH_0627 PF06271 APH_0627 APH_0628 PF02152 Dihydroneopterin aldolase APH_0629 PF00056 lactate/malate dehydrogenase, NAD binding domain APH_0629 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APH_0634 PF05135 Phage gp6-like head-tail connector protein APH_0636 PF06199 APH_0636 APH_0642 PF02502 Ribose/Galactose Isomerase APH_0645 PF06723 MreB/Mbl protein APH_0646 PF01648 4'-phosphopantetheinyl transferase superfamily APH_0647 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APH_0647 PF03129 Anticodon binding domain APH_0650 PF01467 Cytidylyltransferase APH_0658 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_0659 PF00578 AhpC/TSA family APH_0659 PF10417 C-terminal domain of 1-Cys peroxiredoxin APH_0660 PF00155 Aminotransferase class I and II APH_0662 PF01617 APH_0662 APH_0663 PF01617 APH_0663 APH_0664 PF01617 APH_0664 APH_0668 PF13561 Enoyl-(Acyl carrier protein) reductase APH_0669 PF00171 Aldehyde dehydrogenase family APH_0669 PF01619 Proline dehydrogenase APH_0669 PF14850 DNA-binding domain of Proline dehydrogenase APH_0671 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APH_0673 PF00266 Aminotransferase class-V APH_0673 PF02082 Transcriptional regulator APH_0674 PF00266 Aminotransferase class-V APH_0675 PF01592 NifU-like N terminal domain APH_0676 PF01521 Iron-sulphur cluster biosynthesis APH_0678 PF00012 Hsp70 protein APH_0679 PF00111 2Fe-2S iron-sulfur cluster binding domain APH_0683 PF13547 APH_0683 APH_0683 PF13550 APH_0683 APH_0687 PF03918 Cytochrome C biogenesis protein APH_0688 PF09356 APH_0688 APH_0688 PF09931 APH_0688 APH_0690 PF01795 MraW methylase family APH_0693 PF01812 5-formyltetrahydrofolate cyclo-ligase family APH_0694 PF01018 GTP1/OBG APH_0694 PF01926 50S ribosome-binding GTPase APH_0695 PF00113 Enolase, C-terminal TIM barrel domain APH_0695 PF03952 Enolase, N-terminal domain APH_0697 PF00829 Ribosomal prokaryotic L21 protein APH_0698 PF01016 Ribosomal L27 protein APH_0700 PF00750 tRNA synthetases class I (R) APH_0700 PF03485 Arginyl tRNA synthetase N terminal domain APH_0700 PF05746 DALR anticodon binding domain APH_0705 PF01523 Putative modulator of DNA gyrase APH_0706 PF01227 GTP cyclohydrolase I APH_0707 PF00231 ATP synthase APH_0711 PF00146 NADH dehydrogenase APH_0712 PF00384 Molybdopterin oxidoreductase APH_0712 PF09326 APH_0712 APH_0712 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APH_0712 PF13510 2Fe-2S iron-sulfur cluster binding domain APH_0716 PF00204 DNA gyrase B APH_0716 PF00986 DNA gyrase B subunit, carboxyl terminus APH_0716 PF01751 Toprim domain APH_0716 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_0730 PF00929 Exonuclease APH_0731 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin APH_0732 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APH_0734 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_0735 PF00586 AIR synthase related protein, N-terminal domain APH_0735 PF02769 AIR synthase related protein, C-terminal domain APH_0736 PF02565 Recombination protein O C terminal APH_0736 PF11967 Recombination protein O N terminal APH_0740 PF00023 Ankyrin repeat APH_0740 PF12796 Ankyrin repeats (3 copies) APH_0745 PF01565 FAD binding domain APH_0745 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APH_0746 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APH_0746 PF03900 Porphobilinogen deaminase, C-terminal domain APH_0747 PF08245 Mur ligase middle domain APH_0748 PF01425 Amidase APH_0749 PF02441 Flavoprotein APH_0754 PF01078 Magnesium chelatase, subunit ChlI APH_0754 PF13335 APH_0754 APH_0754 PF13541 Subunit ChlI of Mg-chelatase APH_0759 PF04542 Sigma-70 region 2 APH_0759 PF04545 Sigma-70, region 4 APH_0761 PF17289 APH_0761 APH_0765 PF00009 Elongation factor Tu GTP binding domain APH_0765 PF00679 Elongation factor G C-terminus APH_0765 PF03144 Elongation factor Tu domain 2 APH_0765 PF06421 GTP-binding protein LepA C-terminus APH_0766 PF08241 Methyltransferase domain APH_0767 PF00013 KH domain APH_0767 PF00575 S1 RNA binding domain APH_0767 PF01138 3' exoribonuclease family, domain 1 APH_0767 PF03725 3' exoribonuclease family, domain 2 APH_0767 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APH_0768 PF00312 Ribosomal protein S15 APH_0769 PF01509 TruB family pseudouridylate synthase (N terminal domain) APH_0769 PF16198 APH_0769 APH_0770 PF06723 MreB/Mbl protein APH_0775 PF04386 Stringent starvation protein B APH_0780 PF01121 Dephospho-CoA kinase APH_0782 PF01300 Telomere recombination APH_0783 PF13177 DNA polymerase III, delta subunit APH_0784 PF00216 Bacterial DNA-binding protein APH_0790 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APH_0791 PF01467 Cytidylyltransferase APH_0794 PF04452 RNA methyltransferase APH_0795 PF00578 AhpC/TSA family APH_0796 PF00133 tRNA synthetases class I (I, L, M and V) APH_0796 PF08264 Anticodon-binding domain of tRNA APH_0801 PF12838 4Fe-4S dicluster domain APH_0802 PF00717 Peptidase S24-like APH_0803 PF01521 Iron-sulphur cluster biosynthesis APH_0813 PF00231 ATP synthase APH_0814 PF01227 GTP cyclohydrolase I APH_0830 PF01728 FtsJ-like methyltransferase APH_0848 PF00083 Sugar (and other) transporter APH_0851 PF00490 Delta-aminolevulinic acid dehydratase APH_0852 PF02540 NAD synthase APH_0857 PF00488 MutS domain V APH_0857 PF01624 MutS domain I APH_0857 PF05188 MutS domain II APH_0857 PF05190 MutS family domain IV APH_0857 PF05192 MutS domain III APH_0860 PF01230 HIT domain APH_0861 PF05065 Phage capsid family APH_0863 PF00676 Dehydrogenase E1 component APH_0863 PF02779 Transketolase, pyrimidine binding domain APH_0863 PF16870 APH_0863 APH_0867 PF00206 Lyase APH_0867 PF10397 Adenylosuccinate lyase C-terminus APH_0876 PF03099 Biotin/lipoate A/B protein ligase family APH_0880 PF00919 Uncharacterized protein family UPF0004 APH_0880 PF04055 Radical SAM superfamily APH_0884 PF01541 GIY-YIG catalytic domain APH_0884 PF08459 UvrC Helix-hairpin-helix N-terminal APH_0884 PF14520 Helix-hairpin-helix domain APH_0893 PF00183 Hsp90 protein APH_0893 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_0895 PF00083 Sugar (and other) transporter APH_0897 PF00633 Helix-hairpin-helix motif APH_0897 PF00730 HhH-GPD superfamily base excision DNA repair protein APH_0897 PF10576 Iron-sulfur binding domain of endonuclease III APH_0899 PF00521 DNA gyrase/topoisomerase IV, subunit A APH_0899 PF03989 DNA gyrase C-terminal domain, beta-propeller APH_0903 PF00580 UvrD/REP helicase N-terminal domain APH_0903 PF13361 UvrD-like helicase C-terminal domain APH_0910 PF03054 tRNA methyl transferase APH_0911 PF03232 APH_0911 APH_0923 PF02600 Disulfide bond formation protein DsbB APH_0925 PF00471 Ribosomal protein L33 APH_0928 PF12796 Ankyrin repeats (3 copies) APH_0928 PF13606 Ankyrin repeat APH_0929 PF00550 Phosphopantetheine attachment site APH_0930 PF00109 Beta-ketoacyl synthase, N-terminal domain APH_0930 PF02801 Beta-ketoacyl synthase, C-terminal domain APH_0933 PF02481 DNA recombination-mediator protein A APH_0938 PF01617 APH_0938 APH_0939 PF01119 DNA mismatch repair protein, C-terminal domain APH_0939 PF08676 MutL C terminal dimerisation domain APH_0939 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_0940 PF01618 APH_0940 APH_0944 PF00512 His Kinase A (phospho-acceptor) domain APH_0944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_0945 PF00202 Aminotransferase class-III APH_0955 PF01580 FtsK/SpoIIIE family APH_0955 PF09397 Ftsk gamma domain APH_0956 PF02325 APH_0956 APH_0957 PF00571 CBS domain APH_0957 PF01595 APH_0957 APH_0957 PF03471 Transporter associated domain APH_0960 PF02581 Thiamine monophosphate synthase/TENI APH_0961 PF03618 APH_0961 APH_0962 PF00581 Rhodanese-like domain APH_0964 PF01391 Collagen triple helix repeat (20 copies) APH_0965 PF00551 Formyl transferase APH_0965 PF02911 Formyl transferase, C-terminal domain APH_0968 PF00004 ATPase family associated with various cellular activities (AAA) APH_0968 PF02190 ATP-dependent protease La (LON) domain APH_0968 PF05362 Lon protease (S16) C-terminal proteolytic domain APH_0969 PF06689 ClpX C4-type zinc finger APH_0969 PF07724 AAA domain (Cdc48 subfamily) APH_0969 PF10431 C-terminal, D2-small domain, of ClpB protein APH_0970 PF00574 Clp protease APH_0971 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APH_0971 PF05697 Bacterial trigger factor protein (TF) APH_0971 PF05698 Bacterial trigger factor protein (TF) C-terminus APH_0974 PF04608 Phosphatidylglycerophosphatase A APH_0975 PF00583 Acetyltransferase (GNAT) family APH_0977 PF04384 Iron-sulphur cluster assembly APH_0979 PF00155 Aminotransferase class I and II APH_0980 PF01617 APH_0980 APH_0982 PF01297 Periplasmic solute binding protein family APH_0983 PF00005 ABC transporter APH_0984 PF03109 APH_0984 APH_0985 PF11412 Disulphide bond corrector protein DsbC APH_0986 PF00005 ABC transporter APH_0987 PF02416 mttA/Hcf106 family APH_0988 PF02132 RecR protein APH_0988 PF13662 Toprim domain APH_0989 PF00163 Ribosomal protein S4/S9 N-terminal domain APH_0989 PF01479 S4 domain APH_0993 PF08543 Phosphomethylpyrimidine kinase APH_0994 PF00308 Bacterial dnaA protein APH_0995 PF01594 APH_0995 APH_0998 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APH_0999 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APH_1001 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APH_1003 PF02811 PHP domain APH_1003 PF07733 Bacterial DNA polymerase III alpha subunit APH_1003 PF14579 Helix-hairpin-helix motif APH_1004 PF01722 BolA-like protein APH_1008 PF01243 Pyridoxamine 5'-phosphate oxidase APH_1008 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APH_1010 PF02230 Phospholipase/Carboxylesterase APH_1012 PF01327 Polypeptide deformylase APH_1013 PF01180 Dihydroorotate dehydrogenase APH_1014 PF03309 Type III pantothenate kinase APH_1015 PF01899 APH_1015 APH_1016 PF00155 Aminotransferase class I and II APH_1017 PF01617 APH_1017 APH_1018 PF01617 APH_1018 APH_1022 PF01351 Ribonuclease HII APH_1023 PF00623 RNA polymerase Rpb1, domain 2 APH_1023 PF04983 RNA polymerase Rpb1, domain 3 APH_1023 PF04997 RNA polymerase Rpb1, domain 1 APH_1023 PF04998 RNA polymerase Rpb1, domain 5 APH_1023 PF05000 RNA polymerase Rpb1, domain 4 APH_1024 PF00562 RNA polymerase Rpb2, domain 6 APH_1024 PF04560 RNA polymerase Rpb2, domain 7 APH_1024 PF04561 RNA polymerase Rpb2, domain 2 APH_1024 PF04563 RNA polymerase beta subunit APH_1024 PF04565 RNA polymerase Rpb2, domain 3 APH_1024 PF10385 RNA polymerase beta subunit external 1 domain APH_1025 PF00542 Ribosomal protein L7/L12 C-terminal domain APH_1026 PF00466 Ribosomal protein L10 APH_1027 PF00687 Ribosomal protein L1p/L10e family APH_1028 PF00298 Ribosomal protein L11, RNA binding domain APH_1028 PF03946 Ribosomal protein L11, N-terminal domain APH_1029 PF02357 Transcription termination factor nusG APH_1030 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APH_1032 PF00009 Elongation factor Tu GTP binding domain APH_1032 PF03143 Elongation factor Tu C-terminal domain APH_1032 PF03144 Elongation factor Tu domain 2 APH_1033 PF00009 Elongation factor Tu GTP binding domain APH_1033 PF00679 Elongation factor G C-terminus APH_1033 PF03144 Elongation factor Tu domain 2 APH_1033 PF03764 Elongation factor G, domain IV APH_1033 PF14492 Elongation Factor G, domain II APH_1034 PF00177 Ribosomal protein S7p/S5e APH_1035 PF00164 Ribosomal protein S12/S23 APH_1036 PF00753 Metallo-beta-lactamase superfamily APH_1036 PF07521 RNA-metabolising metallo-beta-lactamase APH_1037 PF04052 TolB amino-terminal domain APH_1037 PF07676 WD40-like Beta Propeller Repeat APH_1042 PF08511 COQ9 APH_1043 PF13437 HlyD family secretion protein APH_1045 PF00528 Binding-protein-dependent transport system inner membrane component APH_1048 PF03060 Nitronate monooxygenase APH_1049 PF02630 SCO1/SenC APH_1050 PF12849 PBP superfamily domain APH_1051 PF01165 Ribosomal protein S21 APH_1052 PF00549 CoA-ligase APH_1052 PF08442 ATP-grasp domain APH_1053 PF00549 CoA-ligase APH_1053 PF02629 CoA binding domain APH_1056 PF01171 PP-loop family APH_1059 PF01411 tRNA synthetases class II (A) APH_1059 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APH_1060 PF00528 Binding-protein-dependent transport system inner membrane component APH_1061 PF00120 Glutamine synthetase, catalytic domain APH_1062 PF12706 Beta-lactamase superfamily domain APH_1070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APH_1070 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_1071 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_1071 PF07497 Rho termination factor, RNA-binding domain APH_1071 PF07498 Rho termination factor, N-terminal domain APH_1073 PF00227 Proteasome subunit APH_1074 PF00004 ATPase family associated with various cellular activities (AAA) APH_1074 PF07724 AAA domain (Cdc48 subfamily) APH_1074 PF10431 C-terminal, D2-small domain, of ClpB protein APH_1075 PF01209 ubiE/COQ5 methyltransferase family APH_1076 PF01617 APH_1076 APH_1077 PF01617 APH_1077 APH_1079 PF00133 tRNA synthetases class I (I, L, M and V) APH_1079 PF09334 tRNA synthetases class I (M) APH_1081 PF01617 APH_1081 APH_1084 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APH_1084 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APH_1085 PF00115 Cytochrome C and Quinol oxidase polypeptide I APH_1086 PF01040 UbiA prenyltransferase family APH_1087 PF13525 Outer membrane lipoprotein APH_1088 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APH_1088 PF02843 Phosphoribosylglycinamide synthetase, C domain APH_1088 PF02844 Phosphoribosylglycinamide synthetase, N domain APH_1090 PF02699 Preprotein translocase subunit APH_1093 PF01171 PP-loop family APH_1097 PF00712 DNA polymerase III beta subunit, N-terminal domain APH_1097 PF02767 DNA polymerase III beta subunit, central domain APH_1097 PF02768 DNA polymerase III beta subunit, C-terminal domain APH_1098 PF01612 3'-5' exonuclease APH_1099 PF00072 Response regulator receiver domain APH_1099 PF00486 Transcriptional regulatory protein, C terminal APH_1100 PF07022 Bacteriophage CI repressor helix-turn-helix domain APH_1101 PF00719 Inorganic pyrophosphatase APH_1107 PF00380 Ribosomal protein S9/S16 APH_1108 PF00572 Ribosomal protein L13 APH_1110 PF02321 Outer membrane efflux protein APH_1111 PF10609 ParA/MinD ATPase like APH_1112 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APH_1112 PF14572 Phosphoribosyl synthetase-associated domain APH_1113 PF02686 Glu-tRNAGln amidotransferase C subunit APH_1114 PF01617 APH_1114 APH_1115 PF01617 APH_1115 APH_1117 PF00330 Aconitase family (aconitate hydratase) APH_1117 PF00694 Aconitase C-terminal domain APH_1118 PF01617 APH_1118 APH_1119 PF02222 ATP-grasp domain APH_1120 PF04379 Protein of unknown function (DUF525) APH_1124 PF01617 APH_1124 APH_1125 PF01617 APH_1125 APH_1129 PF03135 APH_1129 APH_1130 PF04956 APH_1130 APH_1131 PF04956 APH_1131 APH_1132 PF04956 APH_1132 APH_1133 PF04956 APH_1133 APH_1134 PF04956 APH_1134 APH_1136 PF04956 APH_1136 APH_1144 PF04956 APH_1144 APH_1146 PF01145 SPFH domain / Band 7 family APH_1147 PF01145 SPFH domain / Band 7 family APH_1148 PF00595 PDZ domain (Also known as DHR or GLGF) APH_1148 PF13180 PDZ domain APH_1148 PF13365 Trypsin-like peptidase domain APH_1149 PF00035 Double-stranded RNA binding motif APH_1149 PF14622 Ribonuclease-III-like APH_1150 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 APH_1152 PF01617 APH_1152 APH_1155 PF01617 APH_1155 APH_1158 PF00675 Insulinase (Peptidase family M16) APH_1158 PF05193 Peptidase M16 inactive domain APH_1159 PF00675 Insulinase (Peptidase family M16) APH_1159 PF05193 Peptidase M16 inactive domain APH_1160 PF01252 APH_1160 APH_1161 PF01687 Riboflavin kinase APH_1161 PF06574 FAD synthetase APH_1162 PF00462 Glutaredoxin APH_1163 PF01617 APH_1163 APH_1164 PF02491 SHS2 domain inserted in FTSA APH_1164 PF14450 Cell division protein FtsA APH_1165 PF01368 DHH family APH_1165 PF02272 DHHA1 domain APH_1166 PF00180 Isocitrate/isopropylmalate dehydrogenase APH_1168 PF01617 APH_1168 APH_1169 PF01617 APH_1169 APH_1170 PF00805 Pentapeptide repeats (8 copies) APH_1170 PF13599 Pentapeptide repeats (9 copies) APH_1171 PF02104 APH_1171 APH_1173 PF00156 Phosphoribosyl transferase domain APH_1174 PF00899 ThiF family APH_1175 PF00462 Glutaredoxin APH_1176 PF01617 APH_1176 APH_1177 PF01617 APH_1177 APH_1178 PF01043 SecA preprotein cross-linking domain APH_1178 PF02810 SEC-C motif APH_1178 PF07516 SecA Wing and Scaffold domain APH_1178 PF07517 SecA DEAD-like domain APH_1179 PF00004 ATPase family associated with various cellular activities (AAA) APH_1179 PF01434 Peptidase family M41 APH_1180 PF01171 PP-loop family APH_1182 PF02386 Cation transport protein APH_1183 PF02491 SHS2 domain inserted in FTSA APH_1183 PF14450 Cell division protein FtsA APH_1185 PF01617 APH_1185 APH_1186 PF01617 APH_1186 APH_1190 PF02326 APH_1190 APH_1191 PF00137 ATP synthase subunit C APH_1192 PF00119 ATP synthase A chain APH_1193 PF13685 Iron-containing alcohol dehydrogenase APH_1194 PF01617 APH_1194 APH_1195 PF01617 APH_1195 APH_1197 PF00132 Bacterial transferase hexapeptide (six repeats) APH_1198 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APH_1198 PF00364 Biotin-requiring enzyme APH_1199 PF00557 Metallopeptidase family M24 APH_1200 PF05175 Methyltransferase small domain APH_1202 PF01617 APH_1202 APH_1205 PF00115 Cytochrome C and Quinol oxidase polypeptide I APH_1206 PF01066 CDP-alcohol phosphatidyltransferase APH_1207 PF01808 AICARFT/IMPCHase bienzyme APH_1207 PF02142 MGS-like domain APH_1208 PF07977 FabA-like domain APH_1209 PF03938 Outer membrane protein (OmpH-like) APH_1210 PF01103 Surface antigen APH_1210 PF07244 Surface antigen variable number repeat APH_1211 PF02163 Peptidase family M50 APH_1212 PF03937 Flavinator of succinate dehydrogenase APH_1213 PF13899 Thioredoxin-like APH_1214 PF00768 D-alanyl-D-alanine carboxypeptidase APH_1214 PF07943 Penicillin-binding protein 5, C-terminal domain APH_1215 PF01617 APH_1215 APH_1216 PF01743 Poly A polymerase head domain APH_1216 PF12627 Probable RNA and SrmB- binding site of polymerase A APH_1217 PF00334 Nucleoside diphosphate kinase APH_1218 PF01381 Helix-turn-helix APH_1219 PF01617 APH_1219 APH_1220 PF01617 APH_1220 APH_1221 PF01617 APH_1221 APH_1223 PF00154 recA bacterial DNA recombination protein APH_1224 PF00133 tRNA synthetases class I (I, L, M and V) APH_1224 PF08264 Anticodon-binding domain of tRNA APH_1226 PF01617 APH_1226 APH_1227 PF00448 SRP54-type protein, GTPase domain APH_1228 PF13500 AAA domain APH_1229 PF01617 APH_1229 APH_1230 PF01617 APH_1230 APH_1231 PF08886 Glutamate-cysteine ligase APH_1232 PF00285 Citrate synthase APH_1233 PF00117 Glutamine amidotransferase class-I APH_1233 PF00958 GMP synthase C terminal domain APH_1238 PF01617 APH_1238 APH_1239 PF01617 APH_1239 APH_1240 PF01617 APH_1240 APH_1241 PF01617 APH_1241 APH_1242 PF01617 APH_1242 APH_1243 PF00155 Aminotransferase class I and II APH_1244 PF00579 tRNA synthetases class I (W and Y) APH_1246 PF00120 Glutamine synthetase, catalytic domain APH_1246 PF03951 Glutamine synthetase, beta-Grasp domain APH_1247 PF00348 Polyprenyl synthetase APH_1248 PF01617 APH_1248 APH_1249 PF01617 APH_1249 APH_1252 PF06144 DNA polymerase III, delta subunit APH_1253 PF01617 APH_1253 APH_1255 PF01617 APH_1255 APH_1256 PF01617 APH_1256 APH_1257 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APH_1257 PF00364 Biotin-requiring enzyme APH_1257 PF02817 e3 binding domain APH_1258 PF01791 DeoC/LacD family aldolase APH_1263 PF00707 Translation initiation factor IF-3, C-terminal domain APH_1263 PF05198 Translation initiation factor IF-3, N-terminal domain APH_1264 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APH_1264 PF03129 Anticodon binding domain APH_1264 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APH_1265 PF02464 Competence-damaged protein APH_1266 PF01245 Ribosomal protein L19 APH_1267 PF01746 tRNA (Guanine-1)-methyltransferase APH_1268 PF01782 RimM N-terminal domain APH_1269 PF01617 APH_1269 APH_1270 PF01571 Aminomethyltransferase folate-binding domain APH_1271 PF01578 APH_1271 APH_1271 PF16327 APH_1271 APH_1272 PF01617 APH_1272 APH_1273 PF01617 APH_1273 APH_1274 PF01617 APH_1274 APH_1275 PF01617 APH_1275 APH_1276 PF02542 YgbB family APH_1277 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APH_1279 PF00731 AIR carboxylase APH_1280 PF00578 AhpC/TSA family APH_1281 PF00216 Bacterial DNA-binding protein APH_1282 PF13411 MerR HTH family regulatory protein APH_1285 PF01926 50S ribosome-binding GTPase APH_1285 PF06071 Protein of unknown function (DUF933) APH_1287 PF01617 APH_1287 APH_1288 PF01926 50S ribosome-binding GTPase APH_1288 PF10396 GTP-binding protein TrmE N-terminus APH_1288 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE APH_1290 PF02130 Uncharacterized protein family UPF0054 APH_1291 PF01878 EVE domain APH_1292 PF00091 Tubulin/FtsZ family, GTPase domain APH_1292 PF12327 FtsZ family, C-terminal domain APH_1295 PF00510 Cytochrome c oxidase subunit III APH_1297 PF02441 Flavoprotein APH_1298 PF00270 DEAD/DEAH box helicase APH_1298 PF00271 Helicase conserved C-terminal domain APH_1298 PF17191 APH_1298 APH_1299 PF01370 NAD dependent epimerase/dehydratase family APH_1300 PF00156 Phosphoribosyl transferase domain APH_1300 PF13537 Glutamine amidotransferase domain APH_1301 PF01195 Peptidyl-tRNA hydrolase APH_1302 PF01386 Ribosomal L25p family APH_1302 PF14693 Ribosomal protein TL5, C-terminal domain APH_1303 PF00156 Phosphoribosyl transferase domain APH_1305 PF00999 Sodium/hydrogen exchanger family APH_1305 PF02254 TrkA-N domain APH_1306 PF00578 AhpC/TSA family APH_1307 PF03653 APH_1307 APH_1308 PF02779 Transketolase, pyrimidine binding domain APH_1308 PF02780 Transketolase, C-terminal domain APH_1310 PF01523 Putative modulator of DNA gyrase APH_1311 PF01617 APH_1311 APH_1312 PF01617 APH_1312 APH_1313 PF01617 APH_1313 APH_1314 PF00925 GTP cyclohydrolase II APH_1316 PF00515 Tetratricopeptide repeat APH_1316 PF08242 Methyltransferase domain APH_1319 PF00925 GTP cyclohydrolase II APH_1321 PF00162 Phosphoglycerate kinase APH_1322 PF02601 APH_1322 APH_1322 PF13742 APH_1322 APH_1323 PF13717 APH_1323 APH_1325 PF01617 APH_1325 APH_1326 PF02355 Protein export membrane protein APH_1326 PF07549 SecD/SecF GG Motif APH_1328 PF01617 APH_1328 APH_1329 PF01617 APH_1329 APH_1330 PF01617 APH_1330 APH_1331 PF01668 SmpB protein APH_1332 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APH_1333 PF01272 Transcription elongation factor, GreA/GreB, C-term APH_1333 PF03449 Transcription elongation factor, N-terminal APH_1334 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_1334 PF00306 ATP synthase alpha/beta chain, C terminal domain APH_1334 PF02874 ATP synthase alpha/beta family, beta-barrel domain APH_1335 PF00213 ATP synthase delta (OSCP) subunit APH_1337 PF07330 APH_1337 APH_1341 PF02687 APH_1341 APH_1341 PF12704 MacB-like periplasmic core domain APH_1343 PF01617 APH_1343 APH_1344 PF02367 Uncharacterised P-loop hydrolase UPF0079 APH_1345 PF01027 Inhibitor of apoptosis-promoting Bax1 APH_1346 PF01118 Semialdehyde dehydrogenase, NAD binding domain APH_1346 PF02774 Semialdehyde dehydrogenase, dimerisation domain APH_1347 PF02575 YbaB/EbfC DNA-binding family APH_1348 PF12169 DNA polymerase III subunits gamma and tau domain III APH_1348 PF13177 DNA polymerase III, delta subunit APH_1349 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APH_1349 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APH_1350 PF01617 APH_1350 APH_1351 PF01617 APH_1351 APH_1352 PF01617 APH_1352 APH_1354 PF00154 recA bacterial DNA recombination protein APH_1355 PF01617 APH_1355 APH_1358 PF01617 APH_1358 APH_1359 PF01617 APH_1359 APH_1360 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APH_1361 PF01617 APH_1361 APH_1365 PF10276 Zinc-finger domain APH_1366 PF02355 Protein export membrane protein APH_1366 PF07549 SecD/SecF GG Motif APH_1367 PF00271 Helicase conserved C-terminal domain APH_1367 PF02151 UvrB/uvrC motif APH_1367 PF04851 Type III restriction enzyme, res subunit APH_1367 PF12344 Ultra-violet resistance protein B APH_1371 PF03167 Uracil DNA glycosylase superfamily APH_1372 PF01327 Polypeptide deformylase APH_1373 PF01553 Acyltransferase APH_1374 PF01649 Ribosomal protein S20 APH_1375 PF01327 Polypeptide deformylase APH_1376 PF01790 APH_1376 APH_1377 PF03023 APH_1377 APH_1389 PF01617 APH_1389 APH_1390 PF01617 APH_1390 APH_1391 PF01617 APH_1391 APH_1392 PF01617 APH_1392 APH_1394 PF05494 Toluene tolerance, Ttg2 APH_1395 PF01545 Cation efflux family APH_1397 PF03379 APH_1397 APH_1398 PF01258 Prokaryotic dksA/traR C4-type zinc finger APH_1399 PF01617 APH_1399 APH_1401 PF01617 APH_1401 APH_1402 PF02534 Type IV secretory system Conjugative DNA transfer APH_1403 PF00437 Type II/IV secretion system protein APH_1404 PF03743 Bacterial conjugation TrbI-like protein APH_1405 PF03524 Conjugal transfer protein APH_1406 PF04335 VirB8 protein APH_1408 PF01617 APH_1408 APH_1409 PF02463 RecF/RecN/SMC N terminal domain