APH_0001 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs APH_0001 SM00475 5'-3' exonuclease APH_0001 SM00482 DNA polymerase A domain APH_0004 SM00382 ATPases associated with a variety of cellular activities APH_0015 SM00271 DnaJ molecular chaperone homology domain APH_0017 SM01207 APH_0017 APH_0021 SM01091 Transporter associated domain APH_0041 SM00382 ATPases associated with a variety of cellular activities APH_0042 SM00919 Malic enzyme, NAD binding domain APH_0042 SM01274 APH_0042 APH_0064 SM00357 Cold shock protein domain APH_0064 SM00382 ATPases associated with a variety of cellular activities APH_0064 SM00959 Rho termination factor, N-terminal domain APH_0066 SM00271 DnaJ molecular chaperone homology domain APH_0067 SM00932 Scaffold protein Nfu/NifU N terminal APH_0088 SM00116 Domain in cystathionine beta-synthase and other proteins. APH_0088 SM01240 APH_0088 APH_0092 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. APH_0096 SM00978 APH_0096 APH_0107 SM00487 DEAD-like helicases superfamily APH_0107 SM00490 helicase superfamily c-terminal domain APH_0107 SM00982 APH_0107 APH_0107 SM01058 CarD-like/TRCF domain APH_0129 SM00865 Tubulin/FtsZ family, C-terminal domain APH_0135 SM00357 Cold shock protein domain APH_0136 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APH_0136 SM00387 Histidine kinase-like ATPases APH_0136 SM00388 His Kinase A (phosphoacceptor) domain APH_0137 SM00474 3'-5' exonuclease APH_0138 SM00292 breast cancer carboxy-terminal domain APH_0138 SM00532 Ligase N family APH_0156 SM01219 APH_0156 APH_0157 SM00382 ATPases associated with a variety of cellular activities APH_0166 SM00382 ATPases associated with a variety of cellular activities APH_0170 SM00072 Guanylate kinase homologues. APH_0192 SM00749 bacterial OsmY and nodulation domain APH_0196 SM00382 ATPases associated with a variety of cellular activities APH_0196 SM00448 cheY-homologous receiver domain APH_0218 SM00729 Elongator protein 3, MiaB family, Radical SAM APH_0218 SM00876 Biotin and Thiamin Synthesis associated domain APH_0224 SM01228 APH_0224 APH_0225 SM01211 APH_0225 APH_0235 SM00382 ATPases associated with a variety of cellular activities APH_0235 SM01086 C-terminal, D2-small domain, of ClpB protein APH_0241 SM00883 Chaperonin 10 Kd subunit APH_0249 SM00851 MGS-like domain APH_0249 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APH_0256 SM00382 ATPases associated with a variety of cellular activities APH_0257 SM00829 Enoylreductase APH_0259 SM00248 ankyrin repeats APH_0260 SM00244 prohibitin homologues APH_0273 SM00316 Ribosomal protein S1-like RNA-binding domain APH_0275 SM00967 RNA 2'-O ribose methyltransferase substrate binding APH_0279 SM01403 APH_0279 APH_0283 SM01382 APH_0283 APH_0283 SM01383 APH_0283 APH_0286 SM00322 K homology RNA-binding domain APH_0290 SM01374 APH_0290 APH_0291 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. APH_0303 SM00662 RNA polymerases D APH_0305 SM00873 B3/4 domain APH_0305 SM00874 tRNA synthetase B5 domain APH_0305 SM00896 Ferredoxin-fold anticodon binding domain APH_0311 SM00903 Flavin reductase like domain APH_0313 SM00382 ATPases associated with a variety of cellular activities APH_0332 SM00732 Likely ribonuclease with RNase H fold. APH_0336 SM00788 Adenylosuccinate synthetase APH_0340 SM00861 Transketolase, pyrimidine binding domain APH_0349 SM00382 ATPases associated with a variety of cellular activities APH_0349 SM00962 SRP54-type protein, GTPase domain APH_0349 SM00963 SRP54-type protein, helical bundle domain APH_0356 SM00487 DEAD-like helicases superfamily APH_0356 SM00490 helicase superfamily c-terminal domain APH_0364 SM00878 Biotin carboxylase C-terminal domain APH_0367 SM00729 Elongator protein 3, MiaB family, Radical SAM APH_0373 SM00382 ATPases associated with a variety of cellular activities APH_0381 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain APH_0392 SM00564 beta-propeller repeat APH_0411 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain APH_0411 SM01232 APH_0411 APH_0420 SM00937 APH_0420 APH_0434 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APH_0445 SM00316 Ribosomal protein S1-like RNA-binding domain APH_0445 SM00322 K homology RNA-binding domain APH_0450 SM00382 ATPases associated with a variety of cellular activities APH_0450 SM01086 C-terminal, D2-small domain, of ClpB protein APH_0451 SM00838 Elongation factor G C-terminus APH_0468 SM00937 APH_0468 APH_0470 SM00845 GatB domain APH_0474 SM00382 ATPases associated with a variety of cellular activities APH_0474 SM00760 Bacterial dnaA protein helix-turn-helix domain APH_0494 SM00382 ATPases associated with a variety of cellular activities APH_0496 SM00116 Domain in cystathionine beta-synthase and other proteins. APH_0496 SM00924 MgtE intracellular N domain APH_0514 SM01409 APH_0514 APH_0527 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family APH_0547 SM00841 Elongation factor P, C-terminal APH_0547 SM01185 APH_0547 APH_0549 SM00363 S4 RNA-binding domain APH_0551 SM00267 diguanylate cyclase APH_0551 SM00448 cheY-homologous receiver domain APH_0555 SM00840 APH_0555 APH_0571 SM00400 zinc finger APH_0571 SM00493 APH_0571 APH_0572 SM00534 ATPase domain of DNA mismatch repair MUTS family APH_0582 SM00387 Histidine kinase-like ATPases APH_0582 SM00388 His Kinase A (phosphoacceptor) domain APH_0582 SM00448 cheY-homologous receiver domain APH_0597 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain APH_0597 SM00437 Bacterial DNA topoisomerase I DNA-binding domain APH_0597 SM00493 APH_0597 APH_0622 SM00650 Ribosomal RNA adenine dimethylases APH_0628 SM00905 Dihydroneopterin aldolase APH_0668 SM00822 APH_0668 APH_0695 SM01192 APH_0695 APH_0695 SM01193 APH_0695 APH_0700 SM00836 DALR anticodon binding domain APH_0700 SM01016 Arginyl tRNA synthetase N terminal dom APH_0709 SM00248 ankyrin repeats APH_0712 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APH_0716 SM00387 Histidine kinase-like ATPases APH_0716 SM00433 TopoisomeraseII APH_0730 SM00479 APH_0730 APH_0740 SM00248 ankyrin repeats APH_0754 SM00382 ATPases associated with a variety of cellular activities APH_0765 SM00838 Elongation factor G C-terminus APH_0767 SM00316 Ribosomal protein S1-like RNA-binding domain APH_0767 SM00322 K homology RNA-binding domain APH_0768 SM01387 APH_0768 APH_0783 SM00382 ATPases associated with a variety of cellular activities APH_0784 SM00411 bacterial (prokaryotic) histone like domain APH_0851 SM01004 Delta-aminolevulinic acid dehydratase APH_0857 SM00533 DNA-binding domain of DNA mismatch repair MUTS family APH_0857 SM00534 ATPase domain of DNA mismatch repair MUTS family APH_0863 SM00861 Transketolase, pyrimidine binding domain APH_0867 SM00998 Adenylosuccinate lyase C-terminus APH_0880 SM00729 Elongator protein 3, MiaB family, Radical SAM APH_0884 SM00278 Helix-hairpin-helix DNA-binding motif class 1 APH_0884 SM00465 GIY-YIG type nucleases (URI domain) APH_0893 SM00387 Histidine kinase-like ATPases APH_0897 SM00478 endonuclease III APH_0897 SM00525 APH_0897 APH_0899 SM00434 DNA Topoisomerase IV APH_0928 SM00248 ankyrin repeats APH_0930 SM00825 Beta-ketoacyl synthase APH_0939 SM00853 MutL C terminal dimerisation domain APH_0939 SM01340 APH_0939 APH_0944 SM00387 Histidine kinase-like ATPases APH_0944 SM00388 His Kinase A (phosphoacceptor) domain APH_0955 SM00843 APH_0955 APH_0957 SM01091 Transporter associated domain APH_0962 SM00450 Rhodanese Homology Domain APH_0968 SM00382 ATPases associated with a variety of cellular activities APH_0968 SM00464 Found in ATP-dependent protease La (LON) APH_0969 SM00382 ATPases associated with a variety of cellular activities APH_0969 SM00994 ClpX C4-type zinc finger APH_0969 SM01086 C-terminal, D2-small domain, of ClpB protein APH_0983 SM00382 ATPases associated with a variety of cellular activities APH_0986 SM00382 ATPases associated with a variety of cellular activities APH_0988 SM00493 APH_0988 APH_0989 SM00363 S4 RNA-binding domain APH_0989 SM01390 APH_0989 APH_1003 SM00481 DNA polymerase alpha chain like domain APH_1023 SM00663 RNA polymerase I subunit A N-terminus APH_1028 SM00649 Ribosomal protein L11/L12 APH_1029 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. APH_1033 SM00838 Elongation factor G C-terminus APH_1033 SM00889 Elongation factor G, domain IV APH_1036 SM00849 Metallo-beta-lactamase superfamily APH_1053 SM00881 CoA binding domain APH_1059 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain APH_1061 SM01230 APH_1061 APH_1062 SM00849 Metallo-beta-lactamase superfamily APH_1071 SM00357 Cold shock protein domain APH_1071 SM00382 ATPases associated with a variety of cellular activities APH_1071 SM00959 Rho termination factor, N-terminal domain APH_1074 SM00382 ATPases associated with a variety of cellular activities APH_1074 SM01086 C-terminal, D2-small domain, of ClpB protein APH_1088 SM01209 APH_1088 APH_1088 SM01210 APH_1088 APH_1090 SM01323 APH_1090 APH_1097 SM00480 DNA polymerase III beta subunit APH_1098 SM00474 3'-5' exonuclease APH_1099 SM00448 cheY-homologous receiver domain APH_1099 SM00862 Transcriptional regulatory protein, C terminal APH_1100 SM00530 Helix-turn-helix XRE-family like proteins APH_1112 SM01400 APH_1112 APH_1146 SM00244 prohibitin homologues APH_1147 SM00244 prohibitin homologues APH_1148 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APH_1149 SM00358 Double-stranded RNA binding motif APH_1149 SM00535 Ribonuclease III family APH_1161 SM00904 Riboflavin kinase APH_1164 SM00842 Cell division protein FtsA APH_1166 SM01329 APH_1166 APH_1178 SM00957 SecA DEAD-like domain APH_1178 SM00958 SecA preprotein cross-linking domain APH_1179 SM00382 ATPases associated with a variety of cellular activities APH_1183 SM00842 Cell division protein FtsA APH_1207 SM00798 AICARFT/IMPCHase bienzyme APH_1207 SM00851 MGS-like domain APH_1209 SM00935 Outer membrane protein (OmpH-like) APH_1211 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APH_1214 SM00936 Penicillin-binding protein 5, C-terminal domain APH_1217 SM00562 APH_1217 APH_1218 SM00530 Helix-turn-helix XRE-family like proteins APH_1227 SM00382 ATPases associated with a variety of cellular activities APH_1227 SM00962 SRP54-type protein, GTPase domain APH_1227 SM00963 SRP54-type protein, helical bundle domain APH_1246 SM01230 APH_1246 APH_1258 SM01133 APH_1258 APH_1264 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain APH_1279 SM01001 AIR carboxylase APH_1281 SM00411 bacterial (prokaryotic) histone like domain APH_1282 SM00422 helix_turn_helix, mercury resistance APH_1292 SM00864 Tubulin/FtsZ family, GTPase domain APH_1292 SM00865 Tubulin/FtsZ family, C-terminal domain APH_1298 SM00487 DEAD-like helicases superfamily APH_1298 SM00490 helicase superfamily c-terminal domain APH_1308 SM00861 Transketolase, pyrimidine binding domain APH_1316 SM00028 Tetratricopeptide repeats APH_1346 SM00859 Semialdehyde dehydrogenase, NAD binding domain APH_1348 SM00382 ATPases associated with a variety of cellular activities APH_1349 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APH_1354 SM00382 ATPases associated with a variety of cellular activities APH_1367 SM00487 DEAD-like helicases superfamily APH_1367 SM00490 helicase superfamily c-terminal domain APH_1371 SM00986 Uracil DNA glycosylase superfamily APH_1371 SM00987 UreE urease accessory protein, C-terminal domain APH_1373 SM00563 Phosphate acyltransferases