locus_tag old_locus_tag gene Name start end strand product note type ID NCBI APH_0001 APH_0001 polA polA 122 2683 + DNA polymerase I identified by similarity to SP:P80194%3B match to protein family HMM PF00476%3B match to protein family HMM PF01367%3B match to protein family HMM PF01612%3B match to protein family HMM PF02739%3B match to protein family HMM TIGR00593 gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0001 APH_0002 APH_0002 rpe rpe 2838 3548 + ribulose-phosphate 3-epimerase identified by match to protein family HMM PF00834%3B match to protein family HMM TIGR01163 gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0002 APH_0003 APH_0003 APH_0003 3624 4358 + putative ABC transporter%2C permease protein identified by similarity to GB:AAS14650.1%3B match to protein family HMM PF02405 gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0003 APH_0004 APH_0004 APH_0004 4365 5090 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0004 APH_0005 APH_0005 APH_0005 6151 7008 + hypothetical protein identified by Glimmer2%3B putative gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0005 APH_0006 APH_0006 APH_0006 7046 7711 + Es1 family protein identified by similarity to SP:P26428%3B match to protein family HMM PF01965 gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0006 APH_0007 APH_0007 metK metK 7895 9073 - S-adenosylmethionine synthetase identified by similarity to SP:P04384%3B match to protein family HMM PF00438%3B match to protein family HMM PF02772%3B match to protein family HMM PF02773%3B match to protein family HMM TIGR01034 gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0007 APH_0008 APH_0008 APH_0008 9233 9309 + tRNA-Arg tRNA gene7 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0008 APH_0009 APH_0009 APH_0009 9321 10499 + ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family identified by match to protein family HMM PF01494%3B match to protein family HMM TIGR01988 gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0009 APH_0010 APH_0010 APH_0010 11313 11417 + hypothetical protein identified by Glimmer2%3B putative gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0010 APH_0011 APH_0011 APH_0011 11486 12109 - hypothetical protein identified by Glimmer2%3B putative gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0011 APH_0012 APH_0012 APH_0012 12162 12233 - tRNA-Gln tRNA gene11 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0012 APH_0013 APH_0013 glyQ-1 glyQ-1 12403 13254 + glycyl-tRNA synthetase%2C alpha subunit identified by similarity to SP:P00960%3B match to protein family HMM PF02091%3B match to protein family HMM TIGR00388 gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0013 APH_0014 APH_0014 glyS glyS 13256 15361 + glycyl-tRNA synthetase%2C beta subunit identified by similarity to SP:P00961%3B match to protein family HMM PF02092%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00211 gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0014 APH_0015 APH_0015 dnaJ dnaJ 15439 16587 + chaperone protein DnaJ identified by similarity to SP:P08622%3B match to protein family HMM PF00226%3B match to protein family HMM PF00684%3B match to protein family HMM PF01556%3B match to protein family HMM TIGR02349 gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0015 APH_0016 APH_0016 nadC nadC 16610 17437 - nicotinate-nucleotide pyrophosphorylase identified by similarity to SP:P39666%3B match to protein family HMM PF01729%3B match to protein family HMM PF02749%3B match to protein family HMM TIGR00078 gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0016 APH_0017 APH_0017 APH_0017 17529 18107 + conserved hypothetical protein TIGR00023 identified by match to protein family HMM PF02660%3B match to protein family HMM TIGR00023 gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0017 APH_0018 APH_0018 ruvC ruvC 18109 18600 - crossover junction endodeoxyribonuclease RuvC identified by similarity to SP:P24239%3B match to protein family HMM PF02075%3B match to protein family HMM TIGR00228 gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0018 APH_0019 APH_0019 APH_0019 18605 19462 - cytochrome c oxidase%2C subunit III identified by match to protein family HMM PF00510 gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0019 APH_0020 APH_0020 hemE hemE 19525 20556 - uroporphyrinogen decarboxylase identified by similarity to SP:P42503%3B match to protein family HMM PF01208%3B match to protein family HMM TIGR01464 gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0020 APH_0021 APH_0021 APH_0021 20942 21811 + putative hemolysin identified by similarity to SP:Q54318%3B match to protein family HMM PF00571%3B match to protein family HMM PF03471 gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0021 APH_0022 APH_0022 APH_0022 21852 22322 - phage prohead protease%2C HK97 family identified by similarity to SP:P49860%3B match to protein family HMM PF04586%3B match to protein family HMM TIGR01543 gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0022 APH_0023 APH_0023 APH_0023 22352 23479 - phage portal protein%2C HK97 family identified by match to protein family HMM PF04860%3B match to protein family HMM TIGR01537 gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0023 APH_0024 APH_0024 APH_0024 23527 23655 - hypothetical protein identified by Glimmer2%3B putative gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0024 APH_0025 APH_0025 APH_0025 23719 24477 + putative biotin synthesis protein BioC identified by similarity to SP:P12999 gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0025 APH_0026 APH_0026 nadA nadA 24534 25499 + quinolinate synthetase complex%2C A subunit identified by similarity to SP:O05104%3B match to protein family HMM PF02445%3B match to protein family HMM TIGR00550 gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0026 APH_0027 APH_0027 fdxA fdxA 25534 25914 - ferredoxin identified by similarity to GB:AAA85787.1%3B match to protein family HMM PF00037 gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0027 APH_0028 APH_0028 APH_0028 25886 26086 + hypothetical protein identified by Glimmer2%3B putative gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0028 APH_0029 APH_0029 p44-63 p44-63 26250 26921 - P44-63 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0029 APH_0030 APH_0030 p44-64 p44-64 27328 27957 - P44-64 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0030 APH_0031 APH_0031 APH_0031 28385 28501 + hypothetical protein identified by Glimmer2%3B putative gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0031 APH_0032 APH_0032 APH_0032 28789 30648 - conserved domain protein gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0032 APH_0033 APH_0033 APH_0033 30808 31098 - hypothetical protein identified by Glimmer2%3B putative gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0033 APH_0034 APH_0034 APH_0034 31291 31377 + tRNA-Ser tRNA gene33 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0034 APH_0035 APH_0035 trpS trpS 31639 32634 - tryptophanyl-tRNA synthetase identified by match to protein family HMM PF00579%3B match to protein family HMM TIGR00233 gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0035 APH_0036 APH_0036 grpE grpE 32641 33276 - co-chaperone GrpE identified by match to protein family HMM PF01025 gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0036 APH_0037 APH_0037 ribD ribD 33356 34450 + riboflavin biosynthesis protein RibD identified by similarity to SP:P25539%3B match to protein family HMM PF00383%3B match to protein family HMM PF01872%3B match to protein family HMM TIGR00326 gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0037 APH_0038 APH_0038 pyrG pyrG 34514 36139 - CTP synthase identified by similarity to SP:P08398%3B match to protein family HMM PF00117%3B match to protein family HMM PF06418%3B match to protein family HMM TIGR00337 gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0038 APH_0039 APH_0039 secG secG 36152 36475 - preprotein translocase%2C SecG subunit identified by match to protein family HMM PF03840%3B match to protein family HMM TIGR00810 gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0039 APH_0040 APH_0040 xerD xerD 36738 37673 + tyrosine recombinase XerD identified by similarity to SP:P21891%3B match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0040 APH_0041 APH_0041 APH_0041 38037 38714 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0041 APH_0042 APH_0042 APH_0042 39100 41355 + malate dehydrogenase identified by similarity to SP:O30808%3B match to protein family HMM PF00390%3B match to protein family HMM PF01515%3B match to protein family HMM PF03949 gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0042 APH_0043 APH_0043 APH_0043 41662 44388 + conserved hypothetical protein identified by similarity to GB:AAS14671.1 gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0043 APH_0044 APH_0044 APH_0044 44756 46243 + NADH-ubiquinone/plastoquinone oxidoreductase family protein identified by match to protein family HMM PF00361 gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0044 APH_0045 APH_0045 APH_0045 47382 47834 - mce-related protein identified by match to protein family HMM PF02470 gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0045 APH_0046 APH_0046 APH_0046 48028 48333 - conserved domain protein gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0046 APH_0047 APH_0047 APH_0047 48447 48908 + ATP cone domain protein identified by match to protein family HMM PF03477%3B match to protein family HMM TIGR00244 gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0047 APH_0048 APH_0048 APH_0048 48972 49044 + tRNA-Ala tRNA gene47 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0048 APH_0049 APH_0049 APH_0049 49150 55959 - hypothetical protein identified by Glimmer2%3B putative gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0049 APH_0050 APH_0050 APH_0050 56495 60628 + hypothetical protein identified by Glimmer2%3B putative gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0050 APH_0051 APH_0051 APH_0051 61001 62011 + iron-binding protein identified by similarity to GB:AAD03802.1%3B match to protein family HMM PF01547 gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0051 APH_0052 APH_0052 APH_0052 62012 62227 + conserved hypothetical protein identified by similarity to GB:CAC47765.1%3B match to protein family HMM PF03966 gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0052 APH_0053 APH_0053 APH_0053 62305 63588 - major facilitator family transporter identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0053 APH_0054 APH_0054 rpsP rpsP 63916 64206 + ribosomal protein S16 identified by match to protein family HMM PF00886%3B match to protein family HMM TIGR00002 gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0054 APH_0055 APH_0055 APH_0055 64713 64838 + hypothetical protein identified by Glimmer2%3B putative gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0055 APH_0056 APH_0056 APH_0056 64958 65668 - oxidoreductase%2C short chain dehydrogenase/reductase family identified by match to protein family HMM PF00106 gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0056 APH_0057 APH_0057 APH_0057 65755 65949 + hypothetical protein identified by Glimmer2%3B putative gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0057 APH_0058 APH_0058 APH_0058 66297 67322 + S-adenosylmethionine synthetase%2C truncated identified by similarity to SP:P04384%3B match to protein family HMM PF02772%3B match to protein family HMM PF02773%3B match to protein family HMM TIGR01034 gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0058 APH_0059 APH_0059 pheS pheS 67898 68926 - phenylalanyl-tRNA synthetase%2C alpha subunit identified by similarity to SP:P08312%3B match to protein family HMM PF01409%3B match to protein family HMM PF02912%3B match to protein family HMM TIGR00468 gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0059 APH_0060 APH_0060 rplT rplT 68907 69293 - ribosomal protein L20 identified by similarity to SP:P55873%3B match to protein family HMM PF00453%3B match to protein family HMM TIGR01032 gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0060 APH_0061 APH_0061 rpmI rpmI 69317 69517 - ribosomal protein L35 identified by match to protein family HMM PF01632%3B match to protein family HMM TIGR00001 gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0061 APH_0062 APH_0062 APH_0062 69911 70477 + conserved hypothetical protein identified by similarity to GB:AAL02641.1%3B match to protein family HMM PF06242 gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0062 APH_0063 APH_0063 APH_0063 70474 70635 + hypothetical protein identified by Glimmer2%3B putative gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0063 APH_0064 APH_0064 rho-1 rho-1 70587 71945 + transcription termination factor Rho identified by similarity to SP:P52156%3B match to protein family HMM PF00006%3B match to protein family HMM PF07497%3B match to protein family HMM PF07498%3B match to protein family HMM TIGR00767 gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0064 APH_0065 APH_0065 lpdA-1 lpdA-1 72028 73443 - dihydrolipoamide dehydrogenase identified by similarity to SP:P54533%3B match to protein family HMM PF00070%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01350 gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0065 APH_0066 APH_0066 APH_0066 73558 73914 - DnaJ domain protein identified by match to protein family HMM PF00226 gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0066 APH_0067 APH_0067 APH_0067 74057 74623 + NifU domain protein identified by match to protein family HMM PF01106 gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0067 APH_0068 APH_0068 APH_0068 75032 77053 - hypothetical protein identified by Glimmer2%3B putative gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0068 APH_0069 APH_0069 thiS thiS 77229 77438 + thiamine biosynthesis protein ThiS identified by match to protein family HMM PF02597%3B match to protein family HMM TIGR01683 gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0069 APH_0070 APH_0070 APH_0070 77472 78257 + thiamin biosynthesis ThiG identified by match to protein family HMM PF05690 gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0070 APH_0071 APH_0071 APH_0071 78498 78914 - conserved hypothetical protein identified by similarity to GB:AAL02970.1 gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0071 APH_0072 APH_0072 gltX-1 gltX-1 79102 80454 + glutamyl-tRNA synthetase identified by similarity to SP:P04805%3B match to protein family HMM PF00749%3B match to protein family HMM TIGR00464 gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0072 APH_0073 APH_0073 APH_0073 80704 80779 + tRNA-His tRNA gene72 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0073 APH_0074 APH_0074 APH_0074 80911 82092 + conserved hypothetical protein identified by similarity to GB:AAS14910.1 gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0074 APH_0075 APH_0075 APH_0075 82103 82651 + putative methyltransferase identified by match to protein family HMM PF03602 gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0075 APH_0076 APH_0076 p44-65 p44-65 82943 83524 + P44-65 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0076 APH_0077 APH_0077 APH_0077 83993 84916 - auxin efflux carrier family protein identified by match to protein family HMM PF03547 gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0077 APH_0078 APH_0078 APH_0078 85022 85330 - putative oxidoreductase identified by match to protein family HMM PF04800 gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0078 APH_0079 APH_0079 xseB xseB 85386 85613 + exodeoxyribonuclease VII%2C small subunit identified by similarity to SP:P22938%3B match to protein family HMM PF02609 gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0079 APH_0080 APH_0080 trx trx 86047 86379 - thioredoxin identified by similarity to SP:P00274%3B match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0080 APH_0081 APH_0081 virB9-2 virB9-2 86392 87207 - type IV secretion system protein VirB9-2 Name change from VirB9-1 to VirB9-2. PMID: 20670295 gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0081 APH_0082 APH_0082 pdhA pdhA 87566 88603 - pyruvate dehydrogenase complex%2C E1 component%2C pyruvate dehydrogenase alpha subunit identified by similarity to SP:Q9R9N5%3B match to protein family HMM PF00676 gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0082 APH_0083 APH_0083 APH_0083 88626 89504 - hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0083 APH_0084 APH_0084 rrlB rrlB 89892 92677 + 23S ribosomal RNA rRNA gene83 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0084 APH_0085 APH_0085 rrfC rrfC 92756 92854 + 5S ribosomal RNA rRNA gene84 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0085 APH_0087 APH_0087 APH_0087 94007 94477 - putative phosphoribosylglycinamide formyltransferase%2C truncated identified by similarity to SP:Q64737%3B match to protein family HMM PF00551 gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0087 APH_0088 APH_0088 guaB guaB 94542 96002 - inosine-5'-monophosphate dehydrogenase identified by similarity to SP:P06981%3B match to protein family HMM PF00478%3B match to protein family HMM PF00571%3B match to protein family HMM TIGR01302 gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0088 APH_0089 APH_0089 ppnK ppnK 96078 96890 - ATP-NAD kinase identified by match to protein family HMM PF01513 gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0089 APH_0090 APH_0090 APH_0090 96900 97121 - putative 50S ribosomal protein L31 identified by similarity to SP:Q03223 gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0090 APH_0091 APH_0091 APH_0091 97192 97806 + conserved domain protein gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0091 APH_0092 APH_0092 fabD fabD 97971 98930 + malonyl CoA-acyl carrier protein transacylase identified by similarity to SP:P71019%3B match to protein family HMM PF00698%3B match to protein family HMM TIGR00128 gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0092 APH_0093 APH_0093 tmk tmk 98947 99606 + thymidylate kinase identified by similarity to SP:P37537%3B match to protein family HMM PF02223%3B match to protein family HMM TIGR00041 gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0093 APH_0094 APH_0094 APH_0094 99774 100949 + putative membrane protein identified by match to protein family HMM PF07690 gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0094 APH_0095 APH_0095 APH_0095 101121 101219 + hypothetical protein identified by Glimmer2%3B putative gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0095 APH_0096 APH_0096 APH_0096 101682 102407 - Tim44-like domain protein identified by match to protein family HMM PF04280 gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0096 APH_0097 APH_0097 secB secB 102441 102917 + protein-export protein SecB identified by similarity to SP:P15040%3B match to protein family HMM PF02556%3B match to protein family HMM TIGR00809 gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0097 APH_0098 APH_0098 APH_0098 102988 103671 + conserved hypothetical protein identified by similarity to GB:AAS14712.1 gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0098 APH_0099 APH_0099 APH_0099 103886 104110 + hypothetical protein identified by Glimmer2%3B putative gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0099 APH_0100 APH_0100 APH_0100 104079 104225 + hypothetical protein identified by Glimmer2%3B putative gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0100 APH_0101 APH_0101 APH_0101 104398 105669 - peptidase%2C M16 family identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0101 APH_0102 APH_0102 APH_0102 105977 106078 + hypothetical protein identified by Glimmer2%3B putative gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0102 APH_0103 APH_0103 APH_0103 106210 107586 + oxidoreductase%2C 2-nitropropane dioxygenase family identified by similarity to GB:AAS13931.1%3B match to protein family HMM PF03060 gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0103 APH_0104 APH_0104 APH_0104 107950 108243 - uridylate kinase%2C truncated identified by similarity to SP:P29464 gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0104 APH_0105 APH_0105 APH_0105 108932 109030 + hypothetical protein identified by Glimmer2%3B putative gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0105 APH_0106 APH_0106 ribE ribE 109222 109833 - riboflavin synthase%2C alpha subunit identified by similarity to SP:P51961%3B match to protein family HMM PF00677%3B match to protein family HMM TIGR00187 gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0106 APH_0107 APH_0107 mfd mfd 110398 113817 - transcription-repair coupling factor identified by similarity to SP:P30958%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF02559%3B match to protein family HMM PF03461%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00580 gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0107 APH_0108 APH_0108 APH_0108 113823 113993 - hypothetical protein identified by Glimmer2%3B putative gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0108 APH_0109 APH_0109 rnhA rnhA 114020 114472 + ribonuclease H1 identified by similarity to SP:P00647%3B match to protein family HMM PF00075 gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0109 APH_0110 APH_0110 APH_0110 114511 117510 + acetamidase/formamidase family protein gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0110 APH_0111 APH_0111 pyrH pyrH 117715 118449 + uridylate kinase identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR02075 gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0111 APH_0112 APH_0112 frr frr 118458 119012 + ribosome recycling factor identified by similarity to SP:P16174%3B match to protein family HMM PF01765%3B match to protein family HMM TIGR00496 gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0112 APH_0113 APH_0113 APH_0113 119550 120257 + putative phosphatidate cytidylyltransferase identified by match to protein family HMM PF01148 gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0113 APH_0114 APH_0114 APH_0114 120721 120930 + hypothetical protein identified by Glimmer2%3B putative gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0114 APH_0115 APH_0115 p44-66 p44-66 121821 122411 + P44-66 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0115 APH_0116 APH_0116 APH_0116 122729 122941 + hypothetical protein identified by Glimmer2%3B putative gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0116 APH_0117 APH_0117 APH_0117 123386 126874 - hypothetical protein identified by Glimmer2%3B putative gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0117 APH_0118 APH_0118 APH_0118 127175 127306 - hypothetical protein identified by Glimmer2%3B putative gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0118 APH_0119 APH_0119 purC purC 127341 128075 - phosphoribosylaminoimidazole-succinocarboxamide synthase identified by similarity to SP:P12046%3B match to protein family HMM PF01259%3B match to protein family HMM TIGR00081 gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0119 APH_0120 APH_0120 hisS hisS 128190 129452 + histidyl-tRNA synthetase identified by similarity to SP:P04804%3B match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00442 gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0120 APH_0121 APH_0121 APH_0121 129534 129689 + hypothetical protein identified by Glimmer2%3B putative gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0121 APH_0122 APH_0122 APH_0122 129926 130672 - thiol:disulfide oxidoreductase identified by similarity to GB:AAM22615.1%3B match to protein family HMM PF01323 gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0122 APH_0123 APH_0123 APH_0123 130983 131969 + putative cytochrome oxidase assembly protein identified by match to protein family HMM PF02628 gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0123 APH_0124 APH_0124 APH_0124 132381 132482 - hypothetical protein identified by Glimmer2%3B putative gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0124 APH_0125 APH_0125 ccmA ccmA 132512 133132 - heme exporter protein CcmA identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01189 gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0125 APH_0126 APH_0126 APH_0126 133116 133214 - hypothetical protein identified by Glimmer2%3B putative gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0126 APH_0127 APH_0127 APH_0127 133682 133804 - hypothetical protein identified by Glimmer2%3B putative gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0127 APH_0128 APH_0128 APH_0128 133932 134093 + hypothetical protein identified by Glimmer2%3B putative gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0128 APH_0129 APH_0129 APH_0129 134208 134885 - tubulin/FtsZ family%2C C-terminal domain protein identified by match to protein family HMM PF03953 gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0129 APH_0130 APH_0130 APH_0130 134999 135556 - putative deoxycytidine triphosphate deaminase identified by similarity to GB:AAS14105.1%3B match to protein family HMM TIGR02274 gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0130 APH_0131 APH_0131 APH_0131 135677 136114 - conserved domain protein gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0131 APH_0132 APH_0132 p44-21 p44-21 136699 137433 - P44-21 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0132 APH_0133 APH_0133 APH_0133 137430 137537 - hypothetical protein identified by Glimmer2%3B putative gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0133 APH_0134 APH_0134 p44-80 p44-80 137815 138120 - P44-80 outer membrane protein%2C truncated p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0134 APH_0135 APH_0135 APH_0135 139122 139391 + cold shock protein%2C CSD family identified by match to protein family HMM PF00313 gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0135 APH_0136 APH_0136 ntrY ntrY 139419 141521 + nitrogen regulation protein/Sensor Histidine Kinase NtrY Name change according to the cited literature. PMID: 16882029 gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0136 APH_0137 APH_0137 APH_0137 141529 142674 + putative ribonuclease D identified by similarity to SP:P09155%3B match to protein family HMM PF01612 gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0137 APH_0138 APH_0138 ligA ligA 142791 144824 - DNA ligase%2C NAD-dependent identified by similarity to SP:P15042%3B match to protein family HMM PF00533%3B match to protein family HMM PF01653%3B match to protein family HMM PF03119%3B match to protein family HMM PF03120%3B match to protein family HMM TIGR00575 gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0138 APH_0139 APH_0139 APH_0139 144830 145159 - glutaredoxin-related protein identified by match to protein family HMM PF00462%3B match to protein family HMM TIGR00365 gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0139 APH_0140 APH_0140 APH_0140 145152 145388 - BolA family protein identified by match to protein family HMM PF01722 gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0140 APH_0141 APH_0141 APH_0141 145621 146121 - putative thiol:disulfide oxidoreductase identified by similarity to SP:P33926 gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0141 APH_0142 APH_0142 p44-87 p44-87 146561 147346 - P44-87 outer membrane protein%2C truncated p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0142 APH_0143 APH_0143 p44-81 p44-81 147821 148051 + P44-81 outer membrane protein%2C truncated p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0143 APH_0144 APH_0144 p44-C p44-C 147836 148039 - P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0144 APH_0145 APH_0145 p44-8 p44-8 148302 149309 - P44-8 outer membrane protein encodes a full-length P44 outer membrane protein gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0145 APH_0146 APH_0146 p44-N p44-N 149266 149391 - P44 outer membrane protein%2C N-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0146 APH_0147 APH_0147 APH_0147 150021 150308 - guanylate kinase%2C truncated identified by similarity to SP:P60548 gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0147 APH_0148 APH_0148 APH_0148 150665 150757 + hypothetical protein identified by Glimmer2%3B putative gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0148 APH_0149 APH_0149 APH_0149 151193 153772 + TRAP transporter%2C 4TM/12TM fusion protein identified by match to protein family HMM PF06808%3B match to protein family HMM TIGR02123 gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0149 APH_0150 APH_0150 APH_0150 153782 154381 + CvpA family protein identified by match to protein family HMM PF02674 gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0150 APH_0151 APH_0151 rpsF rpsF 154458 154787 + ribosomal protein S6 identified by match to protein family HMM PF01250%3B match to protein family HMM TIGR00166 gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0151 APH_0152 APH_0152 rpsR rpsR 154798 155088 + ribosomal protein S18 identified by similarity to SP:P02374%3B match to protein family HMM PF01084%3B match to protein family HMM TIGR00165 gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0152 APH_0153 APH_0153 rplI rplI 155112 155729 + ribosomal protein L9 identified by similarity to SP:P02418%3B match to protein family HMM PF01281%3B match to protein family HMM PF03948%3B match to protein family HMM TIGR00158 gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0153 APH_0154 APH_0154 glyA glyA 155752 157029 + serine hydroxymethyltransferase identified by similarity to SP:P34895%3B match to protein family HMM PF00464%3B match to protein family HMM PF01212 gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0154 APH_0155 APH_0155 APH_0155 157023 157115 + hypothetical protein identified by Glimmer2%3B putative gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0155 APH_0156 APH_0156 APH_0156 157200 157577 + frataxin-like domain protein gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0156 APH_0157 APH_0157 APH_0157 157593 159329 + putative ABC transporter%2C ATP-binding protein/permease protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0157 APH_0158 APH_0158 sdhA-1 sdhA-1 159802 161616 + succinate dehydrogenase%2C flavoprotein subunit identified by similarity to SP:P31038%3B match to protein family HMM PF00890%3B match to protein family HMM PF02910%3B match to protein family HMM TIGR01812%3B match to protein family HMM TIGR01816 gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0158 APH_0159 APH_0159 sdhB-1 sdhB-1 161631 162419 + succinate dehydrogenase%2C iron-sulfur protein identified by match to protein family HMM PF00111%3B match to protein family HMM TIGR00384 gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0159 APH_0160 APH_0160 APH_0160 162420 162578 + putative thymidylate synthase%2C flavin-dependent%2C truncated identified by similarity to GB:AAU03772.1 gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0160 APH_0161 APH_0161 sdhA-2 sdhA-2 162580 164394 + succinate dehydrogenase%2C flavoprotein subunit identified by similarity to SP:P31038%3B match to protein family HMM PF00890%3B match to protein family HMM PF02910%3B match to protein family HMM TIGR01812%3B match to protein family HMM TIGR01816 gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0161 APH_0162 APH_0162 sdhB-2 sdhB-2 164409 165197 + succinate dehydrogenase%2C iron-sulfur protein identified by match to protein family HMM PF00111%3B match to protein family HMM TIGR00384 gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0162 APH_0163 APH_0163 thyX thyX 165198 166064 + thymidylate synthase%2C flavin-dependent identified by match to protein family HMM PF02511%3B match to protein family HMM TIGR02170 gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0163 APH_0164 APH_0164 APH_0164 166520 167689 + bicyclomycin resistance protein identified by similarity to SP:P28246%3B match to protein family HMM PF00083%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00710 gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0164 APH_0165 APH_0165 glyQ-2 glyQ-2 167888 168739 - glycyl-tRNA synthetase%2C alpha subunit identified by similarity to SP:P00960%3B match to protein family HMM PF02091%3B match to protein family HMM TIGR00388 gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0165 APH_0166 APH_0166 ruvB ruvB 168867 169856 - holliday junction DNA helicase RuvB identified by similarity to SP:O32055%3B match to protein family HMM PF00004%3B match to protein family HMM PF05491%3B match to protein family HMM PF05496%3B match to protein family HMM TIGR00635 gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0166 APH_0167 APH_0167 ruvA ruvA 169853 170428 - Holliday junction DNA helicase RuvA identified by similarity to SP:P08576%3B match to protein family HMM PF01330 gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0167 APH_0168 APH_0168 ccmC ccmC 170425 171132 - heme exporter protein CcmC identified by match to protein family HMM PF01578%3B match to protein family HMM TIGR01191 gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0168 APH_0169 APH_0169 APH_0169 171299 171409 + hypothetical protein identified by Glimmer2%3B putative gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0169 APH_0170 APH_0170 gmk gmk 171559 172191 + guanylate kinase identified by similarity to SP:P60548%3B match to protein family HMM PF00625 gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0170 APH_0171 APH_0171 p44-45 p44-45 172921 174024 - P44-45 outer membrane protein encodes a full-length P44 outer membrane protein gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0171 APH_0172 APH_0172 p44-C p44-C 174085 174288 - P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0172 APH_0173 APH_0173 APH_0173 174412 174573 + hypothetical protein identified by Glimmer2%3B putative gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0173 APH_0174 APH_0174 p44-55 p44-55 174551 175531 - P44-55 outer membrane protein%2C silent encodes a full-length P44 outer membrane protein gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0174 APH_0175 APH_0175 folD folD 175932 176846 + methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase identified by similarity to SP:P54382%3B match to protein family HMM PF00763%3B match to protein family HMM PF02882 gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0175 APH_0176 APH_0176 APH_0176 176879 176951 + tRNA-Val tRNA gene174 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0176 APH_0177 APH_0177 APH_0177 177157 178125 + hypothetical protein identified by Glimmer2%3B putative gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0177 APH_0178 APH_0178 APH_0178 178252 179112 - hydrolase%2C alpha/beta fold family identified by match to protein family HMM PF00561 gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0178 APH_0179 APH_0179 APH_0179 179245 179928 - conserved hypothetical protein identified by similarity to PIR:A71691%3B match to protein family HMM PF00561 gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0179 APH_0180 APH_0180 cycM cycM 180220 180744 - cytochrome C%2C membrane-bound identified by similarity to SP:P30323%3B match to protein family HMM PF00034 gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0180 APH_0181 APH_0181 APH_0181 181049 182551 - NADH-ubiquinone/plastoquinone oxidoreductase family protein identified by match to protein family HMM PF00361 gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0181 APH_0182 APH_0182 APH_0182 182839 182970 - hypothetical protein identified by Glimmer2%3B putative gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0182 APH_0183 APH_0183 APH_0183 183662 183805 + hypothetical protein identified by Glimmer2%3B putative gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0183 APH_0184 APH_0184 APH_0184 183810 183989 - hypothetical protein identified by Glimmer2%3B putative gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0184 APH_0185 APH_0185 ppdK ppdK 184143 186767 - pyruvate%2C phosphate dikinase identified by similarity to SP:P22983%3B match to protein family HMM PF00391%3B match to protein family HMM PF01326%3B match to protein family HMM PF02896%3B match to protein family HMM TIGR01828 gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0185 APH_0186 APH_0186 APH_0186 187072 187473 - hypothetical protein identified by Glimmer2%3B putative gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0186 APH_0187 APH_0187 APH_0187 187549 188172 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549 gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0187 APH_0188 APH_0188 APH_0188 188371 188637 + hypothetical protein identified by Glimmer2%3B putative gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0188 APH_0189 APH_0189 APH_0189 188618 188860 + hypothetical protein identified by Glimmer2%3B putative gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0189 APH_0190 APH_0190 aspS aspS 189372 191168 - aspartyl-tRNA synthetase identified by similarity to SP:Q46175%3B match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM PF02938%3B match to protein family HMM TIGR00459 gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0190 APH_0191 APH_0191 APH_0191 191385 191549 + hypothetical protein identified by Glimmer2%3B putative gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0191 APH_0192 APH_0192 APH_0192 191555 192151 + putative osmotically inducible protein identified by similarity to SP:P27291%3B match to protein family HMM PF04972 gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0192 APH_0193 APH_0193 gshB gshB 192161 193078 + glutathione synthetase identified by similarity to SP:P04425%3B match to protein family HMM PF02951%3B match to protein family HMM TIGR01380 gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0193 APH_0194 APH_0194 APH_0194 193127 193240 + hypothetical protein identified by Glimmer2%3B putative gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0194 APH_0195 APH_0195 APH_0195 193321 194097 + cell division protein FtsQ identified by match to protein family HMM PF03799 gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0195 APH_0196 APH_0196 ntrX ntrX 194341 195729 + Response Regulator NtrX%2C putative nitrogen assimilation regulatory protein Name change according to the cited literature. PMID: 16882029 gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0196 APH_0197 APH_0197 APH_0197 195782 195916 + hypothetical protein identified by Glimmer2%3B putative gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0197 APH_0198 APH_0198 gpsA gpsA 196345 197319 - glycerol-3-phosphate dehydrogenase (NAD(P)+) identified by similarity to SP:P37606%3B match to protein family HMM PF01210%3B match to protein family HMM PF03807%3B match to protein family HMM PF07479 gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0198 APH_0200 APH_0200 xerC xerC 197660 198619 + tyrosine recombinase XerC identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0200 APH_0201 APH_0201 APH_0201 199087 199386 + conserved hypothetical protein identified by similarity to GB:AAL08839.1 gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0201 APH_0202 APH_0202 purM-1 purM-1 199549 200583 - phosphoribosylformylglycinamidine cyclo-ligase identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00878 gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0202 APH_0203 APH_0203 APH_0203 200705 201325 + hypothetical protein identified by Glimmer2%3B putative gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0203 APH_0204 APH_0204 APH_0204 201576 201680 + hypothetical protein identified by Glimmer2%3B putative gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0204 APH_0205 APH_0205 APH_0205 201710 202262 + phosphoribosylformylglycinamidine cyclo-ligase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by similarity to SP:P12043 pseudogene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0205 APH_0206 APH_0206 APH_0206 202252 203139 - conserved hypothetical protein identified by similarity to GB:AAS13843.1 gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0206 APH_0207 APH_0207 APH_0207 203332 203715 - iojap-related protein identified by match to protein family HMM PF02410%3B match to protein family HMM TIGR00090 gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0207 APH_0208 APH_0208 APH_0208 203905 205179 + peptidase%2C M48 family identified by match to protein family HMM PF01435%3B match to protein family HMM PF07719 gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0208 APH_0209 APH_0209 APH_0209 205320 205826 + conserved hypothetical protein identified by similarity to GB:AAL08839.1 gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0209 APH_0210 APH_0210 purM-2 purM-2 205989 207023 - phosphoribosylformylglycinamidine cyclo-ligase identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00878 gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0210 APH_0211 APH_0211 APH_0211 207401 207715 - phosphoribosylformylglycinamidine synthase domain protein identified by similarity to SP:P15254 gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0211 APH_0212 APH_0212 folK folK 208442 208972 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase identified by similarity to SP:P29252%3B match to protein family HMM PF01288%3B match to protein family HMM TIGR01498 gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0212 APH_0213 APH_0213 APH_0213 209659 212664 - putative phosphoribosylformylglycinamidine synthase II identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769 gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0213 APH_0214 APH_0214 p44-88 p44-88 213533 214003 - P44-88 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0214 APH_0215 APH_0215 APH_0215 214429 214863 - hypothetical protein identified by Glimmer2%3B putative gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0215 APH_0216 APH_0216 APH_0216 214915 215201 - sRNA ncRNA gene213 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0216 APH_0217 APH_0217 APH_0217 215371 215835 + hypothetical protein identified by Glimmer2%3B putative gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0217 APH_0218 APH_0218 bioB bioB 216504 217472 - biotin synthase identified by similarity to SP:P12996%3B match to protein family HMM PF04055%3B match to protein family HMM PF06968%3B match to protein family HMM TIGR00433 gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0218 APH_0219 APH_0219 APH_0219 217459 217740 - hypothetical protein identified by Glimmer2%3B putative gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0219 APH_0220 APH_0220 APH_0220 217882 218337 - conserved hypothetical protein identified by similarity to GB:AAS14547.1 gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0220 APH_0221 APH_0221 APH_0221 218828 219496 - putative lipoprotein NlpD identified by similarity to SP:P33648%3B match to protein family HMM PF01551 gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0221 APH_0222 APH_0222 glpX glpX 219584 220519 + fructose-1%2C6-bisphosphatase%2C class II identified by match to protein family HMM PF03320%3B match to protein family HMM TIGR00330 gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0222 APH_0223 APH_0223 APH_0223 220682 220888 - hypothetical protein identified by Glimmer2%3B putative gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0223 APH_0224 APH_0224 APH_0224 221234 223120 - pyridine nucleotide-disulfide oxidoreductase identified by match to protein family HMM PF01134%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR00136 gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0224 APH_0225 APH_0225 APH_0225 223222 224004 + putative phosphoribosylformylglycinamidine synthase I identified by similarity to SP:P15254 gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0225 APH_0226 APH_0226 p44-C p44-C 224201 224371 - P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0226 APH_0227 APH_0227 APH_0227 225204 225335 + hypothetical protein identified by Glimmer2%3B putative gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0227 APH_0228 APH_0228 p44-67 p44-67 225559 226182 - P44-67 outer membrane protein%2C silent silent p44 gene encodes a truncated P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0228 APH_0229 APH_0229 p44-68 p44-68 226518 227063 - P44-68 outer membrane protein%2C silent silent p44 gene encodes a truncated P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0229 APH_0230 APH_0230 purN purN 227379 228014 - phosphoribosylglycinamide formyltransferase identified by match to protein family HMM PF00551%3B match to protein family HMM TIGR00639 gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0230 APH_0231 APH_0231 pepA pepA 228020 229552 - cytosol aminopeptidase identified by similarity to SP:P27888%3B match to protein family HMM PF00883%3B match to protein family HMM PF02789 gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0231 APH_0232 APH_0232 APH_0232 229965 230600 + dioxygenase family protein identified by similarity to SP:P15110%3B match to protein family HMM PF00775 gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0232 APH_0233 APH_0233 APH_0233 230741 231637 + hypothetical protein identified by Glimmer2%3B putative gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0233 APH_0234 APH_0234 APH_0234 232179 233591 + putative membrane protein gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0234 APH_0235 APH_0235 clpB clpB 233666 236245 - ATP-dependent chaperone protein ClpB identified by similarity to SP:P03815%3B match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724 gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0235 APH_0236 APH_0236 APH_0236 236489 237235 + oxidoreductase%2C short chain dehydrogenase/reductase family identified by match to protein family HMM PF00106 gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0236 APH_0237 APH_0237 APH_0237 237713 237904 - hypothetical protein identified by Glimmer2%3B putative gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0237 APH_0238 APH_0238 APH_0238 237937 238029 + hypothetical protein identified by Glimmer2%3B putative gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0238 APH_0239 APH_0239 APH_0239 238084 238251 + hypothetical protein identified by Glimmer2%3B putative gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0239 APH_0240 APH_0240 groL groL 238396 240048 - 60 kDa chaperonin identified by match to protein family HMM PF00118%3B match to protein family HMM TIGR02348 gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0240 APH_0241 APH_0241 groS groS 240101 240385 - 10 kDa chaperonin identified by match to protein family HMM PF00166 gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0241 APH_0242 APH_0242 radC radC 240633 241331 + DNA repair protein RadC identified by similarity to SP:P25531%3B match to protein family HMM PF04002%3B match to protein family HMM TIGR00608 gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0242 APH_0243 APH_0243 lipB lipB 241409 242035 + lipoate-protein ligase B identified by similarity to SP:P30976%3B match to protein family HMM PF03099%3B match to protein family HMM TIGR00214 gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0243 APH_0244 APH_0244 APH_0244 242305 242439 - hypothetical protein identified by Glimmer2%3B putative gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0244 APH_0245 APH_0245 pyrC pyrC 242513 243856 - dihydroorotase%2C multifunctional complex type identified by similarity to SP:P25995%3B match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR00857 gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0245 APH_0246 APH_0246 APH_0246 243884 244603 - DNA / pantothenate metabolism flavoprotein family protein identified by similarity to SP:P24285%3B match to protein family HMM PF04127 gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0246 APH_0247 APH_0247 fumC fumC 244680 246068 + fumarate hydratase%2C class II identified by similarity to SP:P28894%3B match to protein family HMM PF00206%3B match to protein family HMM TIGR00979 gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0247 APH_0248 APH_0248 APH_0248 246419 246793 + hypothetical protein identified by Glimmer2%3B putative gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0248 APH_0249 APH_0249 carB carB 246830 250090 - carbamoyl-phosphate synthase%2C large subunit identified by similarity to SP:P00968%3B match to protein family HMM PF00289%3B match to protein family HMM PF02142%3B match to protein family HMM PF02786%3B match to protein family HMM PF02787%3B match to protein family HMM TIGR01369 gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0249 APH_0250 APH_0250 APH_0250 250430 250708 + valyl-tRNA synthetase%2C truncated identified by similarity to SP:O26861 gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0250 APH_0251 APH_0251 APH_0251 250655 250795 - Putative RecA protein%2C degenerate Peptides match to this protein was detected in human HL-60 cells by global proteomic analysis. gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0251 APH_0252 APH_0252 APH_0252 250743 251205 + putative 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0252 APH_0253 APH_0253 APH_0253 251503 251604 - hypothetical protein identified by Glimmer2%3B putative gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0253 APH_0254 APH_0254 folP folP 251662 252474 - dihydropteroate synthase identified by match to protein family HMM PF00809%3B match to protein family HMM TIGR01496 gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0254 APH_0255 APH_0255 APH_0255 252479 252652 - hypothetical protein identified by Glimmer2%3B putative gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0255 APH_0256 APH_0256 APH_0256 252833 255820 + type I secretion system ATPase/hypothetical protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01842 gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0256 APH_0257 APH_0257 qor qor 255944 256924 + quinone oxidoreductase identified by similarity to SP:P28304%3B match to protein family HMM PF00107 gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0257 APH_0258 APH_0258 APH_0258 256969 259335 - ATP-dependent DNA helicase%2C UvrD/Rep family identified by match to protein family HMM PF00580 gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0258 APH_0259 APH_0259 APH_0259 259843 260562 + ankyrin repeat protein identified by match to protein family HMM PF00023 gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0259 APH_0260 APH_0260 APH_0260 260665 261519 + SPFH domain/band 7 family protein identified by match to protein family HMM PF01145 gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0260 APH_0261 APH_0261 APH_0261 261939 262271 + conserved hypothetical protein identified by similarity to GB:AAS14513.1 gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0261 APH_0262 APH_0262 APH_0262 262595 263590 + ATPase%2C AFG1 family identified by match to protein family HMM PF03969 gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0262 APH_0263 APH_0263 hemH hemH 263637 264599 - ferrochelatase identified by similarity to SP:P54225%3B match to protein family HMM PF00762%3B match to protein family HMM TIGR00109 gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0263 APH_0264 APH_0264 APH_0264 264861 264971 - hypothetical protein identified by Glimmer2%3B putative gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0264 APH_0265 APH_0265 APH_0265 264980 266140 - hypothetical protein identified by Glimmer2%3B putative gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0265 APH_0266 APH_0266 APH_0266 266562 266930 - conserved hypothetical protein identified by similarity to GB:AAS14743.1 gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0266 APH_0267 APH_0267 APH_0267 266932 267222 - conserved hypothetical protein identified by similarity to GB:BAB50572.1 gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0267 APH_0268 APH_0268 APH_0268 267362 267811 - transketolase%2C thiamine diphosphate binding domain%2C N-terminal fragment Matched to N-terminus of full length Tkt (660 aa). Peptides match to this protein was detected in human HL-60 cells by global proteomic analysis. gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0268 APH_0269 APH_0269 APH_0269 267876 268190 + hypothetical protein identified by Glimmer2%3B putative gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0269 APH_0270 APH_0270 APH_0270 268519 268650 - hypothetical protein identified by Glimmer2%3B putative gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0270 APH_0271 APH_0271 ihfB ihfB 268718 269011 - integration host factor%2C beta subunit identified by similarity to SP:Q06607%3B match to protein family HMM PF00216 gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0271 APH_0272 APH_0272 sppA sppA 269025 269921 - signal peptide peptidase SppA%2C 36K type identified by match to protein family HMM PF01343%3B match to protein family HMM TIGR00706 gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0272 APH_0273 APH_0273 rpsA rpsA 269929 271557 - ribosomal protein S1 identified by similarity to SP:P02349%3B match to protein family HMM PF00575 gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0273 APH_0274 APH_0274 cmkB cmkB 271660 272346 - cytidylate monophosphate kinase identified by match to protein family HMM PF02224 gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0274 APH_0275 APH_0275 APH_0275 272556 273332 - RNA methyltransferase%2C TrmH family%2C group 3 identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032%3B match to protein family HMM TIGR00186 gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0275 APH_0276 APH_0276 APH_0276 273497 273579 + tRNA-Tyr tRNA gene273 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0276 APH_0277 APH_0277 APH_0277 273587 273657 + tRNA-Gly tRNA gene274 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0277 APH_0278 APH_0278 tuf-1 tuf-1 273712 274893 + translation elongation factor Tu identified by similarity to SP:P02990%3B match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485 gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0278 APH_0279 APH_0279 rpsJ rpsJ 274900 275217 + ribosomal protein S10 identified by match to protein family HMM PF00338%3B match to protein family HMM TIGR01049 gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0279 APH_0280 APH_0280 rplC rplC 275243 275905 + ribosomal protein L3 identified by match to protein family HMM PF00297 gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0280 APH_0281 APH_0281 rplD rplD 275927 276553 + ribosomal protein L4 identified by similarity to SP:P28601%3B match to protein family HMM PF00573 gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0281 APH_0282 APH_0282 rplW rplW 276546 276836 + ribosomal protein L23 identified by similarity to SP:P02424%3B match to protein family HMM PF00276 gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0282 APH_0283 APH_0283 rplB rplB 276833 277663 + ribosomal protein L2 identified by match to protein family HMM PF00181%3B match to protein family HMM PF03947%3B match to protein family HMM TIGR01171 gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0283 APH_0284 APH_0284 rpsS rpsS 277669 277953 + ribosomal protein S19 identified by match to protein family HMM PF00203%3B match to protein family HMM TIGR01050 gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0284 APH_0285 APH_0285 rplV rplV 277956 278294 + ribosomal protein L22 identified by similarity to SP:P02423%3B match to protein family HMM PF00237%3B match to protein family HMM TIGR01044 gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0285 APH_0286 APH_0286 rpsC rpsC 278298 278933 + ribosomal protein S3 identified by similarity to SP:P02352%3B match to protein family HMM PF00189%3B match to protein family HMM PF00417%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR01009 gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0286 APH_0287 APH_0287 rplP rplP 278946 279359 + ribosomal protein L16 identified by similarity to SP:P23406%3B match to protein family HMM PF00252%3B match to protein family HMM TIGR01164 gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0287 APH_0288 APH_0288 rpmC rpmC 279369 279575 + ribosomal protein L29 identified by match to protein family HMM PF00831%3B match to protein family HMM TIGR00012 gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0288 APH_0289 APH_0289 rpsQ rpsQ 279568 279798 + ribosomal protein S17 identified by match to protein family HMM PF00366 gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0289 APH_0290 APH_0290 rplN rplN 279807 280166 + ribosomal protein L14 identified by similarity to SP:P02411%3B match to protein family HMM PF00238%3B match to protein family HMM TIGR01067 gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0290 APH_0291 APH_0291 rplX rplX 280166 280480 + ribosomal protein L24 identified by similarity to SP:P04455%3B match to protein family HMM PF00467%3B match to protein family HMM TIGR01079 gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0291 APH_0292 APH_0292 rplE rplE 280487 281020 + ribosomal protein L5 identified by similarity to SP:P02389%3B match to protein family HMM PF00281%3B match to protein family HMM PF00673 gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0292 APH_0293 APH_0293 rpsN rpsN 281032 281337 + ribosomal protein S14p/S29e identified by similarity to SP:P02370%3B match to protein family HMM PF00253 gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0293 APH_0294 APH_0294 rpsH rpsH 281355 281756 + ribosomal protein S8 identified by similarity to SP:P02361%3B match to protein family HMM PF00410 gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0294 APH_0295 APH_0295 rplF rplF 281769 282311 + ribosomal protein L6 identified by similarity to SP:Q9Z9J9%3B match to protein family HMM PF00347 gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0295 APH_0296 APH_0296 rplR rplR 282328 282693 + 50S ribosomal protein L18 identified by similarity to SP:P09415%3B match to protein family HMM PF00861 gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0296 APH_0297 APH_0297 rpsE rpsE 282702 283223 + ribosomal protein S5 identified by match to protein family HMM PF00333%3B match to protein family HMM PF03719%3B match to protein family HMM TIGR01021 gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0297 APH_0298 APH_0298 rplO rplO 283242 283679 + ribosomal protein L15 identified by similarity to SP:P19946%3B match to protein family HMM PF01305%3B match to protein family HMM TIGR01071 gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0298 APH_0299 APH_0299 secY secY 283700 285004 + preprotein translocase%2C SecY subunit identified by similarity to SP:P03844%3B match to protein family HMM PF00344%3B match to protein family HMM TIGR00967 gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0299 APH_0300 APH_0300 adk adk 284986 285636 + adenylate kinase identified by similarity to SP:P27142%3B match to protein family HMM PF00406 gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0300 APH_0301 APH_0301 rpsM rpsM 285699 286070 + ribosomal protein S13 identified by similarity to SP:P80377%3B match to protein family HMM PF00416 gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0301 APH_0302 APH_0302 rpsK rpsK 286080 286454 + ribosomal protein S11 identified by similarity to SP:P04969%3B match to protein family HMM PF00411 gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0302 APH_0303 APH_0303 rpoA rpoA 286531 287565 + DNA-directed RNA polymerase%2C alpha subunit identified by similarity to SP:P00574%3B match to protein family HMM PF01000%3B match to protein family HMM PF01193%3B match to protein family HMM PF03118%3B match to protein family HMM TIGR02027 gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0303 APH_0304 APH_0304 rplQ rplQ 287599 287997 + ribosomal protein L17 identified by similarity to SP:P02416%3B match to protein family HMM PF01196%3B match to protein family HMM TIGR00059 gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0304 APH_0305 APH_0305 pheT pheT 288010 290388 + phenylalanyl-tRNA synthetase%2C beta subunit identified by similarity to SP:P07395%3B match to protein family HMM PF01588%3B match to protein family HMM PF03147%3B match to protein family HMM PF03483%3B match to protein family HMM PF03484%3B match to protein family HMM TIGR00472 gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0305 APH_0306 APH_0306 APH_0306 291284 293401 + ComEC/Rec2-related protein identified by match to protein family HMM PF03772%3B match to protein family HMM TIGR00360 gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0306 APH_0307 APH_0307 APH_0307 293934 295265 - sodium:alanine symporter family protein identified by match to protein family HMM PF01235 gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0307 APH_0308 APH_0308 rnpA rnpA 295297 295659 - ribonuclease P protein component identified by similarity to SP:P25814%3B match to protein family HMM PF00825%3B match to protein family HMM TIGR00188 gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0308 APH_0309 APH_0309 rpmH rpmH 295650 295784 - ribosomal protein L34 identified by match to protein family HMM PF00468%3B match to protein family HMM TIGR01030 gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0309 APH_0310 APH_0310 ubiA ubiA 296533 297411 + 4-hydroxybenzoate octaprenyltransferase identified by similarity to SP:P26601%3B match to protein family HMM PF01040 gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0310 APH_0311 APH_0311 APH_0311 297432 297926 + flavin reductase family protein identified by match to protein family HMM PF01613 gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0311 APH_0312 APH_0312 APH_0312 298571 298741 + hypothetical protein identified by Glimmer2%3B putative gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0312 APH_0313 APH_0313 pstB pstB 298747 299505 + phosphate ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0313 APH_0314 APH_0314 tgt tgt 299582 300766 - queuine tRNA-ribosyltransferase identified by similarity to SP:P19675%3B match to protein family HMM PF01702%3B match to protein family HMM TIGR00430%3B match to protein family HMM TIGR00449 gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0314 APH_0315 APH_0315 rpmF rpmF 301238 301414 + ribosomal protein L32 identified by match to protein family HMM PF01783%3B match to protein family HMM TIGR01031 gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0315 APH_0316 APH_0316 plsX plsX 301421 302458 + fatty acid/phospholipid synthesis protein PlsX identified by similarity to SP:P27247%3B match to protein family HMM PF02504%3B match to protein family HMM TIGR00182 gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0316 APH_0317 APH_0317 fabH fabH 302458 303417 + 3-oxoacyl-(acyl-carrier-protein) synthase III identified by similarity to SP:P24249%3B match to protein family HMM TIGR00747 gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0317 APH_0318 APH_0318 p44-N p44-N 303552 303875 + P44 outer membrane protein%2C N-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0318 APH_0319 APH_0319 p44-69 p44-69 303876 304505 + P44-69 outer membrane protein%2C silent silent p44 gene encodes a truncated P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0319 APH_0320 APH_0320 APH_0320 304492 304593 + hypothetical protein identified by Glimmer2%3B putative gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0320 APH_0321 APH_0321 APH_0321 304956 305399 - cytidine and deoxycytidylate deaminase family protein identified by match to protein family HMM PF00383 gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0321 APH_0322 APH_0322 APH_0322 305577 306008 + conserved hypothetical protein identified by similarity to GB:AAS14136.1 gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0322 APH_0323 APH_0323 dnaB dnaB 306058 307515 + replicative DNA helicase identified by similarity to SP:P37469%3B match to protein family HMM PF00772%3B match to protein family HMM PF03796%3B match to protein family HMM TIGR00665 gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0323 APH_0324 APH_0324 APH_0324 308778 308936 - hypothetical protein identified by Glimmer2%3B putative gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0324 APH_0325 APH_0325 APH_0325 309262 310320 + oxidoreductase%2C FAD-binding protein identified by match to protein family HMM PF01266 gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0325 APH_0326 APH_0326 APH_0326 310317 310807 - transketolase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by similarity to SP:P51010 pseudogene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0326 APH_0327 APH_0327 APH_0327 310998 311345 - hypothetical protein identified by Glimmer2%3B putative gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0327 APH_0328 APH_0328 APH_0328 311724 312671 - conserved domain protein gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0328 APH_0329 APH_0329 ispA ispA 312675 313517 - geranyltranstransferase identified by similarity to SP:Q08291%3B match to protein family HMM PF00348 gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0329 APH_0330 APH_0330 APH_0330 313821 313893 + tRNA-Glu tRNA gene327 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0330 APH_0331 APH_0331 nrdA nrdA 314089 315900 + ribonucleoside-diphosphate reductase%2C alpha subunit identified by match to protein family HMM PF00317%3B match to protein family HMM PF02867%3B match to protein family HMM TIGR02506 gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0331 APH_0332 APH_0332 APH_0332 315968 316468 + conserved hypothetical protein TIGR00250 identified by similarity to GB:AAS13897.1%3B match to protein family HMM PF03652%3B match to protein family HMM TIGR00250 gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0332 APH_0333 APH_0333 APH_0333 316735 316869 + hypothetical protein identified by Glimmer2%3B putative gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0333 APH_0334 APH_0334 APH_0334 316895 317038 - hypothetical protein identified by Glimmer2%3B putative gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0334 APH_0335 APH_0335 APH_0335 317643 317759 + hypothetical protein identified by Glimmer2%3B putative gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0335 APH_0336 APH_0336 purA purA 318534 319838 - adenylosuccinate synthetase identified by similarity to SP:P12283%3B match to protein family HMM PF00709%3B match to protein family HMM TIGR00184 gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0336 APH_0337 APH_0337 APH_0337 321322 321897 + primosomal protein N truncated gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0337 APH_0338 APH_0338 APH_0338 321980 322597 - OmpA family protein identified by similarity to SP:P07176%3B match to protein family HMM PF00691 gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0338 APH_0339 APH_0339 APH_0339 322933 324408 + putative thermostable metallocarboxypeptidase identified by similarity to SP:P42663 gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0339 APH_0340 APH_0340 tkt tkt 324440 326419 + transketolase identified by similarity to SP:P29277%3B match to protein family HMM PF00456%3B match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00232 gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0340 APH_0341 APH_0341 APH_0341 326444 326701 + putative monovalent cation/proton antiporter%2C MrpF/PhaF subunit identified by match to protein family HMM PF04066 gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0341 APH_0342 APH_0342 APH_0342 326708 327019 + monovalent cation/proton antiporter%2C MnhG/PhaG subunit gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0342 APH_0343 APH_0343 APH_0343 327009 328012 + putative monovalent cation/proton antiporter%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:AAL02893.1 pseudogene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0343 APH_0344 APH_0344 APH_0344 328095 328400 + putative monovalent cation/proton antiporter identified by similarity to GB:AAS14942.1%3B match to protein family HMM PF00420 gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0344 APH_0345 APH_0345 APH_0345 328494 330404 + ribonuclease%2C Rne/Rng family identified by similarity to SP:P21513%3B match to protein family HMM PF00575%3B match to protein family HMM TIGR00757 gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0345 APH_0346 APH_0346 dnaK dnaK 330666 332603 + chaperone protein DnaK identified by similarity to SP:Q98DD1%3B match to protein family HMM PF00012%3B match to protein family HMM TIGR02350 gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0346 APH_0347 APH_0347 APH_0347 332826 333284 + aromatic-rich protein family identified by match to protein family HMM PF03364 gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0347 APH_0348 APH_0348 APH_0348 334071 335591 + NADH-ubiquinone/plastoquinone oxidoreductase family protein identified by match to protein family HMM PF00361 gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0348 APH_0349 APH_0349 ffh ffh 335584 336933 + signal recognition particle protein identified by similarity to SP:P07019%3B match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM PF02978%3B match to protein family HMM TIGR00959 gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0349 APH_0350 APH_0350 era era 337008 337925 + GTP-binding protein Era identified by similarity to SP:P42182%3B match to protein family HMM PF01926%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00436 gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0350 APH_0351 APH_0351 APH_0351 337998 338834 + conserved hypothetical protein identified by similarity to GB:AAS14435.1 gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0351 APH_0352 APH_0352 APH_0352 341471 341968 + conserved hypothetical protein identified by similarity to GB:AAS13980.1%3B match to protein family HMM TIGR02281 gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0352 APH_0353 APH_0353 APH_0353 342279 343988 + metallopeptidase%2C M24 family identified by match to protein family HMM PF00557 gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0353 APH_0354 APH_0354 APH_0354 344436 345128 + conserved hypothetical protein gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0354 APH_0355 APH_0355 APH_0355 345234 346217 + conserved hypothetical protein identified by similarity to GB:AAS14235.1 gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0355 APH_0356 APH_0356 priA priA 346747 348723 + primosomal protein N' identified by similarity to SP:P94461%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00595 gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0356 APH_0357 APH_0357 APH_0357 348826 348981 + hypothetical protein identified by Glimmer2%3B putative gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0357 APH_0358 APH_0358 APH_0358 349113 349223 + hypothetical protein identified by Glimmer2%3B putative gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0358 APH_0359 APH_0359 rpmB rpmB 349923 350234 + ribosomal protein L28 identified by match to protein family HMM PF00830%3B match to protein family HMM TIGR00009 gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0359 APH_0360 APH_0360 APH_0360 350262 350399 - hypothetical protein identified by Glimmer2%3B putative gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0360 APH_0361 APH_0361 APH_0361 350609 350758 + hypothetical protein identified by Glimmer2%3B putative gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0361 APH_0362 APH_0362 APH_0362 351049 352023 - ribosomal large subunit pseudouridine synthase%2C RluA family identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005 gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0362 APH_0363 APH_0363 APH_0363 352017 352235 + hypothetical protein identified by Glimmer2%3B putative gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0363 APH_0364 APH_0364 pccA pccA 352446 354425 + propionyl-CoA carboxylase%2C alpha subunit identified by similarity to SP:P05165%3B match to protein family HMM PF00289%3B match to protein family HMM PF00364%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786 gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0364 APH_0365 APH_0365 APH_0365 354583 358764 + hypothetical protein identified by Glimmer2%3B putative gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0365 APH_0366 APH_0366 APH_0366 359070 360560 + hypothetical protein identified by Glimmer2%3B putative gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0366 APH_0367 APH_0367 lipA lipA 360960 361847 + lipoic acid synthetase identified by similarity to SP:O05941%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00510 gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0367 APH_0368 APH_0368 APH_0368 361880 361954 + tRNA-Arg tRNA gene365 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0368 APH_0369 APH_0369 APH_0369 362127 362219 + hypothetical protein identified by Glimmer2%3B putative gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0369 APH_0370 APH_0370 pstA pstA 362609 363955 - phosphate ABC transporter%2C permease protein PtsA identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00974 gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0370 APH_0371 APH_0371 sodB sodB 364302 364922 + Fe superoxide dismutase identified by similarity to GB:AAM00410.1%3B match to protein family HMM PF00081%3B match to protein family HMM PF02777 gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0371 APH_0372 APH_0372 virB3 virB3 365015 365308 + type IV secretion system protein VirB3 identified by similarity to GB:AAM00406.1%3B match to protein family HMM PF05101 gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0372 APH_0373 APH_0373 virB4-1 virB4-1 365309 367714 + type IV secretion system protein VirB4 (VirB4-1) Name change from VirB4-1 to VirB4-2. PMID: 20670295 gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0373 APH_0374 APH_0374 virB6-1 virB6-1 367707 370247 + type IV secretion system protein VirB6-1 Name change from VirB6 to VirB6-1. PMID: 18952796%2C 20670295 gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0374 APH_0375 APH_0375 virB6-2 virB6-2 370385 373171 + type IV secretion system protein VirB6 family (VirB6-2) Name change from VirB6 to VirB6-2. PMID: 18952796%2C 20670295 gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0375 APH_0376 APH_0376 virB6-3 virB6-3 373184 377617 + type IV secretion system protein VirB6 family (VirB6-3) Name change from VirB6 to VirB6-3. PMID: 18952796%2C 20670295 gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0376 APH_0377 APH_0377 virB6-4 virB6-4 377638 384720 + type IV secretion system protein VirB6 family (VirB6-4) Name change from VirB6 to VirB6-4. PMID: 18952796%2C 20670295 gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0377 APH_0378 APH_0378 APH_0378 384798 385406 - conserved hypothetical protein TIGR02217 identified by similarity to GB:AAS14953.1%3B match to protein family HMM TIGR02217 gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0378 APH_0379 APH_0379 dut dut 386447 386887 - deoxyuridine 5'-triphosphate nucleotidohydrolase identified by match to protein family HMM PF00692%3B match to protein family HMM TIGR00576 gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0379 APH_0380 APH_0380 ispH ispH 387407 388381 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase identified by similarity to SP:P22565%3B match to protein family HMM PF02401%3B match to protein family HMM TIGR00216 gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0380 APH_0381 APH_0381 carA carA 388949 390046 - carbamoyl-phosphate synthase%2C small subunit identified by similarity to SP:P25993%3B match to protein family HMM PF00117%3B match to protein family HMM PF00988%3B match to protein family HMM TIGR01368 gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0381 APH_0382 APH_0382 APH_0382 390708 392141 + HGE-14 protein identified by similarity to GB:AAK69700.1 gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0382 APH_0383 APH_0383 APH_0383 392668 394193 + HGE-14 protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:AAK69700.1 pseudogene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0383 APH_0384 APH_0384 APH_0384 394839 395159 - hypothetical protein identified by Glimmer2%3B putative gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0384 APH_0385 APH_0385 APH_0385 395722 397224 + HGE-14 protein identified by similarity to GB:AAK69700.1 gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0385 APH_0386 APH_0386 APH_0386 397273 398853 + HGE-14 protein identified by similarity to GB:AAK69700.1 gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0386 APH_0387 APH_0387 APH_0387 399003 401087 + HGE-14 protein identified by similarity to GB:AAK69700.1 gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0387 APH_0388 APH_0388 APH_0388 401346 401441 + hypothetical protein identified by Glimmer2%3B putative gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0388 APH_0389 APH_0389 gpmI gpmI 401407 402897 + 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase identified by similarity to SP:P52832%3B match to protein family HMM PF01676%3B match to protein family HMM PF06415%3B match to protein family HMM TIGR01307 gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0389 APH_0390 APH_0390 APH_0390 403003 404325 - putative GTP-binding protein EngA identified by similarity to SP:P77254%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00650 gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0390 APH_0391 APH_0391 APH_0391 404492 404623 + hypothetical protein identified by Glimmer2%3B putative gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0391 APH_0392 APH_0392 APH_0392 404781 406004 + PQQ enzyme repeat domain protein gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0392 APH_0393 APH_0393 lpdA-2 lpdA-2 406012 407418 + dihydrolipoamide dehydrogenase identified by match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF02852%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01350 gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0393 APH_0394 APH_0394 APH_0394 407478 408506 + efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM TIGR01730 gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0394 APH_0395 APH_0395 infA infA 408584 408829 + translation initiation factor IF-1 identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR00008 gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0395 APH_0396 APH_0396 maf maf 408852 409433 + maf protein identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172 gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0396 APH_0397 APH_0397 rpsB rpsB 409572 410462 + ribosomal protein S2 identified by similarity to SP:P02351%3B match to protein family HMM PF00318%3B match to protein family HMM TIGR01011 gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0397 APH_0398 APH_0398 tsf tsf 410498 411361 + translation elongation factor Ts identified by similarity to SP:P80700%3B match to protein family HMM PF00627%3B match to protein family HMM PF00889%3B match to protein family HMM TIGR00116 gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0398 APH_0399 APH_0399 APH_0399 411630 412424 + ABC 3 transport family protein identified by match to protein family HMM PF00950 gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0399 APH_0400 APH_0400 APH_0400 412643 413407 + hypothetical protein identified by Glimmer2%3B putative gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0400 APH_0401 APH_0401 petA petA 413710 414279 + ubiquinol-cytochrome c reductase%2C iron-sulfur subunit identified by similarity to SP:P23136%3B match to protein family HMM PF00355%3B match to protein family HMM TIGR01416 gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0401 APH_0402 APH_0402 petB petB 414288 415514 + ubiquinol-cytochrome c reductase%2C cytochrome b identified by similarity to SP:P23134%3B match to protein family HMM PF00032%3B match to protein family HMM PF00033 gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0402 APH_0403 APH_0403 petC petC 415516 416268 + ubiquinol-cytochrome c reductase%2C cytochrome c1 identified by similarity to SP:P23135%3B match to protein family HMM PF02167 gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0403 APH_0404 APH_0404 asp62 asp62 417021 418745 + Anaplasma surface protein P62 (Asp62) Name change according to the cited literature. PMID: 17766422 gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0404 APH_0405 APH_0405 asp55 asp55 418811 420421 + Anaplasma surface protein P55 (Asp55) Name change according to the cited literature. PMID: 17766422 gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0405 APH_0406 APH_0406 APH_0406 422137 423816 + hypothetical protein identified by Glimmer2%3B putative gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0406 APH_0407 APH_0407 APH_0407 424160 424357 + hypothetical protein identified by Glimmer2%3B putative gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0407 APH_0408 APH_0408 gltX-2 gltX-2 425394 426800 - glutamyl-tRNA synthetase identified by similarity to SP:P04805%3B match to protein family HMM PF00749%3B match to protein family HMM TIGR00464 gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0408 APH_0409 APH_0409 APH_0409 426766 426903 + hypothetical protein identified by Glimmer2%3B putative gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0409 APH_0410 APH_0410 APH_0410 426923 426996 - tRNA-Thr tRNA gene407 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0410 APH_0411 APH_0411 mutM mutM 427134 427940 + formamidopyrimidine-DNA glycosylase identified by similarity to SP:P05523%3B match to protein family HMM PF01149%3B match to protein family HMM PF06831%3B match to protein family HMM TIGR00577 gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0411 APH_0412 APH_0412 APH_0412 427960 428709 + glucose-inhibited division protein%2C degenerate Peptides match to this protein was detected in human HL-60 cells by global proteomic analysis. gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0412 APH_0413 APH_0413 APH_0413 429245 429418 + hypothetical protein identified by Glimmer2%3B putative gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0413 APH_0414 APH_0414 APH_0414 429456 429617 - hypothetical protein identified by Glimmer2%3B putative gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0414 APH_0415 APH_0415 pccB pccB 430072 431601 + propionyl-CoA carboxylase%2C beta subunit identified by similarity to SP:P05166%3B match to protein family HMM PF01039 gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0415 APH_0416 APH_0416 APH_0416 431627 431722 + hypothetical protein identified by Glimmer2%3B putative gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0416 APH_0417 APH_0417 APH_0417 431711 431842 - type IV secretion system protein VirB4%2C N-terminal truncated identified by similarity to GB:AAM00407.1 gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0417 APH_0418 APH_0418 APH_0418 431977 432117 - type IV secretion system protein VirB6%2CC-terminal truncated gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0418 APH_0419 APH_0419 APH_0419 432110 432943 - type IV secretion system protein VirB4%2C truncated identified by similarity to GB:AAM00407.1 gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0419 APH_0420 APH_0420 prfA prfA 433514 434593 - peptide chain release factor 1 identified by similarity to SP:P07011%3B match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00019 gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0420 APH_0421 APH_0421 APH_0421 434919 435500 + putative GTP-binding protein EngB identified by similarity to SP:Q9ZG89%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR00650 gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0421 APH_0422 APH_0422 argB argB 435478 436461 + acetylglutamate kinase identified by similarity to SP:Q9HTN2%3B match to protein family HMM PF00696%3B match to protein family HMM TIGR00761 gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0422 APH_0423 APH_0423 hemF hemF 436644 437468 + coproporphyrinogen III oxidase%2C aerobic identified by similarity to SP:P36553%3B match to protein family HMM PF01218 gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0423 APH_0424 APH_0424 APH_0424 437776 438966 + sodium:dicarboxylate symporter family protein identified by match to protein family HMM PF00375 gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0424 APH_0425 APH_0425 APH_0425 439222 439332 + hypothetical protein identified by Glimmer2%3B putative gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0425 APH_0426 APH_0426 APH_0426 439426 441414 + hypothetical protein identified by Glimmer2%3B putative gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0426 APH_0427 APH_0427 serS serS 441782 443068 - seryl-tRNA synthetase identified by match to protein family HMM PF00587%3B match to protein family HMM PF02403%3B match to protein family HMM TIGR00414 gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0427 APH_0428 APH_0428 APH_0428 443254 444489 + putative DNA recombination protein RmuC identified by similarity to SP:P27850%3B match to protein family HMM PF02646 gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0428 APH_0429 APH_0429 APH_0429 444659 444817 + hypothetical protein identified by Glimmer2%3B putative gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0429 APH_0430 APH_0430 virB8-2 virB8-2 445011 445634 + type IV secretion system protein VirB8-2 Name change from VirB8-1 to VirB8-2. PMID: 20670295 gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0430 APH_0431 APH_0431 miaA miaA 445920 446858 - tRNA delta(2)-isopentenylpyrophosphate transferase identified by similarity to SP:P38436%3B match to protein family HMM PF01715%3B match to protein family HMM TIGR00174 gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0431 APH_0432 APH_0432 APH_0432 447263 447730 + conserved hypothetical protein identified by similarity to GB:AAS14508.1 gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0432 APH_0433 APH_0433 APH_0433 447896 448882 + conserved domain protein gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0433 APH_0434 APH_0434 nuoF nuoF 448952 450232 + NADH dehydrogenase I%2C F subunit identified by similarity to SP:O07948%3B match to protein family HMM PF01512%3B match to protein family HMM TIGR01959 gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0434 APH_0435 APH_0435 nuoJ nuoJ 451464 452069 + NADH dehydrogenase I%2C J subunit identified by similarity to SP:P50975%3B match to protein family HMM PF00499 gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0435 APH_0436 APH_0436 nuoK nuoK 452113 452439 + NADH dehydrogenase I%2C K subunit identified by similarity to SP:P50940%3B match to protein family HMM PF00420 gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0436 APH_0437 APH_0437 nuoL nuoL 452559 454436 + NADH dehydrogenase I%2C L subunit identified by similarity to SP:P29924%3B match to protein family HMM PF00361%3B match to protein family HMM PF00662%3B match to protein family HMM TIGR01974 gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0437 APH_0438 APH_0438 nuoM nuoM 454433 455908 + NADH dehydrogenase I%2C M subunit identified by similarity to SP:P29925%3B match to protein family HMM PF00361%3B match to protein family HMM TIGR01972 gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0438 APH_0439 APH_0439 nuoN nuoN 455910 457304 + NADH dehydrogenase I%2C N subunit identified by similarity to SP:P29926%3B match to protein family HMM PF00361 gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0439 APH_0440 APH_0440 dxr dxr 457401 458558 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase identified by similarity to SP:P45568%3B match to protein family HMM PF02670%3B match to protein family HMM TIGR00243 gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0440 APH_0441 APH_0441 APH_0441 458719 460512 + hypothetical protein identified by Glimmer2%3B putative gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0441 APH_0442 APH_0442 ispG ispG 460691 461893 + 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase identified by match to protein family HMM PF04551%3B match to protein family HMM TIGR00612 gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0442 APH_0443 APH_0443 tatC tatC 462077 462802 + Sec-independent protein translocase TatC identified by match to protein family HMM PF00902%3B match to protein family HMM TIGR00945 gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0443 APH_0444 APH_0444 APH_0444 463060 466158 + transporter%2C AcrB/AcrD/AcrF family identified by match to protein family HMM PF00873 gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0444 APH_0445 APH_0445 nusA nusA 466398 467942 + N utilization substance protein A identified by similarity to SP:P03003%3B match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM TIGR01953%3B match to protein family HMM TIGR01954 gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0445 APH_0446 APH_0446 infB infB 467960 470431 + translation initiation factor IF-2 identified by similarity to SP:P02995%3B match to protein family HMM PF00009%3B match to protein family HMM PF01926%3B match to protein family HMM PF03144%3B match to protein family HMM PF04760%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00487 gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0446 APH_0447 APH_0447 rbfA rbfA 470428 470784 + ribosome-binding factor A identified by match to protein family HMM PF02033%3B match to protein family HMM TIGR00082 gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0447 APH_0448 APH_0448 APH_0448 470781 471008 - translation elongation factor G%2C truncated gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0448 APH_0449 APH_0449 APH_0449 471160 471870 - integral membrane protein%2C TerC family identified by match to protein family HMM PF03741 gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0449 APH_0450 APH_0450 clpA clpA 472014 474335 + ATP-dependent Clp protease%2C ATP-binding subunit ClpA identified by similarity to SP:P15716%3B match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724 gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0450 APH_0451 APH_0451 typA typA 474418 476256 + GTP-binding protein TypA identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01394 gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0451 APH_0452 APH_0452 APH_0452 477026 478408 + HGE-14 protein identified by similarity to GB:AAK69700.1 gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0452 APH_0453 APH_0453 APH_0453 479627 481105 + HGE-14 protein identified by similarity to GB:AAK69700.1 gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0453 APH_0454 APH_0454 APH_0454 481632 483259 + HGE-14 protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:AAK69700.1 pseudogene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0454 APH_0455 APH_0455 APH_0455 483333 485846 + HGE-14 protein identified by similarity to GB:AAK69700.1 gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0455 APH_0456 APH_0456 APH_0456 485916 486080 + hypothetical protein identified by Glimmer2%3B putative gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0456 APH_0457 APH_0457 APH_0457 486569 488020 - HGE-14 protein identified by similarity to GB:AAK69700.1 gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0457 APH_0458 APH_0458 APH_0458 488214 488384 + hypothetical protein identified by Glimmer2%3B putative gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0458 APH_0459 APH_0459 APH_0459 490020 490136 + hypothetical protein identified by Glimmer2%3B putative gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0459 APH_0460 APH_0460 APH_0460 490148 490249 + hypothetical protein identified by Glimmer2%3B putative gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0460 APH_0461 APH_0461 APH_0461 491043 491153 - hypothetical protein identified by Glimmer2%3B putative gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0461 APH_0462 APH_0462 APH_0462 491342 491506 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B%2C degenerate Peptides match to this protein was detected in human HL-60 cells by global proteomic analysis. gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0462 APH_0463 APH_0463 APH_0463 492604 492822 - peptide chain release factor 2%2C truncated identified by similarity to SP:P28367 gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0463 APH_0464 APH_0464 APH_0464 493248 493379 + hypothetical protein identified by Glimmer2%3B putative gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0464 APH_0465 APH_0465 ssb ssb 493546 494025 - single-strand binding protein identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621 gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0465 APH_0466 APH_0466 APH_0466 494189 494407 - hypothetical protein identified by Glimmer2%3B putative gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0466 APH_0467 APH_0467 APH_0467 494789 494902 + hypothetical protein identified by Glimmer2%3B putative gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0467 APH_0468 APH_0468 APH_0468 495029 495709 + peptide chain release factor 2%2C truncated identified by similarity to SP:P07012%3B match to protein family HMM PF03462 gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0468 APH_0469 APH_0469 APH_0469 496085 497470 + putative malonyl-CoA decarboxylase identified by similarity to GB:AAD48994.1%3B match to protein family HMM PF05292 gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0469 APH_0470 APH_0470 gatB gatB 497496 498947 + glutamyl-tRNA(Gln) amidotransferase%2C B subunit identified by match to protein family HMM PF01162%3B match to protein family HMM PF02637%3B match to protein family HMM PF02934%3B match to protein family HMM TIGR00133 gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0470 APH_0471 APH_0471 APH_0471 499228 499785 + exodeoxyribonuclease III%2C N-terminal truncated identified by match to protein family HMM PF03372%3B match to protein family HMM TIGR00633 gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0471 APH_0472 APH_0472 APH_0472 500646 500719 + tRNA-Asp tRNA gene469 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0472 APH_0473 APH_0473 fabI fabI 500764 501591 + enoyl-(acyl-carrier-protein) reductase identified by similarity to SP:P54616 gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0473 APH_0474 APH_0474 dnaA dnaA 501807 503186 + chromosomal replication initiator protein DnaA identified by similarity to SP:P03004%3B match to protein family HMM PF00308%3B match to protein family HMM TIGR00362 gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0474 APH_0475 APH_0475 APH_0475 503209 503325 + hypothetical protein identified by Glimmer2%3B putative gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0475 APH_0476 APH_0476 APH_0476 503325 503432 + hypothetical protein identified by Glimmer2%3B putative gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0476 APH_0477 APH_0477 APH_0477 504372 504482 - hypothetical protein identified by Glimmer2%3B putative gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0477 APH_0478 APH_0478 APH_0478 504671 504835 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B%2C degenerate Peptides match to this protein was detected in human HL-60 cells by global proteomic analysis. gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0478 APH_0479 APH_0479 prfB prfB 505933 507064 - peptide chain release factor 2 identified by similarity to SP:P07012%3B match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00020 gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0479 APH_0480 APH_0480 APH_0480 507265 508002 - conserved hypothetical protein TIGR01033 identified by similarity to GB:AAS14201.1%3B match to protein family HMM PF01709%3B match to protein family HMM TIGR01033 gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0480 APH_0481 APH_0481 APH_0481 509012 509845 + YihY family protein identified by match to protein family HMM PF03631%3B match to protein family HMM TIGR00765 gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0481 APH_0482 APH_0482 bioA bioA 509908 511179 + adenosylmethionine-8-amino-7-oxononanoate aminotransferase identified by similarity to SP:P12995%3B match to protein family HMM PF00202%3B match to protein family HMM TIGR00508 gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0482 APH_0483 APH_0483 APH_0483 511693 511854 + hypothetical protein identified by Glimmer2%3B putative gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0483 APH_0484 APH_0484 APH_0484 512109 512324 + hypothetical protein identified by Glimmer2%3B putative gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0484 APH_0485 APH_0485 APH_0485 512519 513934 - hypothetical protein identified by Glimmer2%3B putative gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0485 APH_0486 APH_0486 APH_0486 514297 514836 + hypothetical protein identified by Glimmer2%3B putative gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0486 APH_0487 APH_0487 APH_0487 515796 516377 + hypothetical protein identified by Glimmer2%3B putative gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0487 APH_0488 APH_0488 APH_0488 516423 516548 + hypothetical protein identified by Glimmer2%3B putative gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0488 APH_0489 APH_0489 APH_0489 517782 517904 + hypothetical protein identified by Glimmer2%3B putative gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0489 APH_0490 APH_0490 APH_0490 518357 518467 - hypothetical protein identified by Glimmer2%3B putative gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0490 APH_0491 APH_0491 APH_0491 518991 519113 + hypothetical protein identified by Glimmer2%3B putative gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0491 APH_0492 APH_0492 APH_0492 519996 520652 - putative transaldolase identified by similarity to SP:P19669%3B match to protein family HMM PF00923%3B match to protein family HMM TIGR00875 gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0492 APH_0493 APH_0493 atpC atpC 520649 521035 - ATP synthase F1%2C epsilon subunit identified by match to protein family HMM PF02823 gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0493 APH_0494 APH_0494 atpD atpD 521127 522566 - ATP synthase F1%2C beta subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01039 gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0494 APH_0495 APH_0495 APH_0495 522668 522750 - tRNA-Leu tRNA gene492 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0495 APH_0496 APH_0496 mgtE mgtE 523100 524446 + magnesium transporter identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM PF03448%3B match to protein family HMM TIGR00400 gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0496 APH_0497 APH_0497 APH_0497 526016 526129 + hypothetical protein identified by Glimmer2%3B putative gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0497 APH_0498 APH_0498 APH_0498 526391 526464 - tRNA-Pro tRNA gene495 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0498 APH_0499 APH_0499 APH_0499 526935 527039 - hypothetical protein identified by Glimmer2%3B putative gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0499 APH_0501 APH_0501 APH_0501 527784 528277 - conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0501 APH_0502 APH_0502 truA truA 528617 529357 - tRNA pseudouridine synthase A identified by similarity to SP:P07649%3B match to protein family HMM PF01416%3B match to protein family HMM TIGR00071 gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0502 APH_0503 APH_0503 pyrB pyrB 529354 530256 - aspartate carbamoyltransferase identified by similarity to SP:P56585%3B match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00670 gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0503 APH_0504 APH_0504 rrmJ rrmJ 530405 531148 - ribosomal RNA large subunit methyltransferase J identified by similarity to SP:P28692%3B match to protein family HMM PF01728 gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0504 APH_0505 APH_0505 xth xth 531793 532614 - exodeoxyribonuclease III identified by match to protein family HMM PF03372%3B match to protein family HMM TIGR00195%3B match to protein family HMM TIGR00633 gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0505 APH_0506 APH_0506 APH_0506 532954 533613 - hypothetical protein identified by Glimmer2%3B putative gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0506 APH_0507 APH_0507 APH_0507 533785 533913 + hypothetical protein identified by Glimmer2%3B putative gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0507 APH_0508 APH_0508 rpmJ rpmJ 533942 534109 + ribosomal protein L36 identified by match to protein family HMM TIGR01022 gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0508 APH_0509 APH_0509 APH_0509 534331 534426 + hypothetical protein identified by Glimmer2%3B putative gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0509 APH_0510 APH_0510 APH_0510 535010 535180 + putative lipoprotein gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0510 APH_0511 APH_0511 APH_0511 535345 535620 + NADH dehydrogenase I%2C C subunit%2C truncated identified by similarity to SP:O84971%3B match to protein family HMM PF00329 gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0511 APH_0512 APH_0512 APH_0512 535739 535852 - hypothetical protein identified by Glimmer2%3B putative gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0512 APH_0513 APH_0513 APH_0513 536954 537637 - Smr domain protein identified by match to protein family HMM PF01713 gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0513 APH_0514 APH_0514 rpoZ rpoZ 537787 538194 - DNA-directed RNA polymerase%2C omega subunit identified by similarity to SP:P08374%3B match to protein family HMM PF01192%3B match to protein family HMM TIGR00690 gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0514 APH_0515 APH_0515 apxR apxR 538570 538905 - expression regulator ApxR Name change according to the cited literature. PMID: 17483233 gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0515 APH_0516 APH_0516 APH_0516 539699 539878 + hypothetical protein identified by Glimmer2%3B putative gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0516 APH_0517 APH_0517 APH_0517 539845 539958 - hypothetical protein identified by Glimmer2%3B putative gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0517 APH_0518 APH_0518 APH_0518 539943 540077 + hypothetical protein identified by Glimmer2%3B putative gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0518 APH_0519 APH_0519 nuoA nuoA 540417 540779 + NADH dehydrogenase I%2C A subunit identified by similarity to SP:O84969%3B match to protein family HMM PF00507 gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0519 APH_0520 APH_0520 nuoB nuoB 540782 541306 + NADH dehydrogenase I%2C B subunit identified by similarity to SP:O84970%3B match to protein family HMM PF01058%3B match to protein family HMM TIGR01957 gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0520 APH_0521 APH_0521 nuoC nuoC 541308 541874 + NADH dehydrogenase I%2C C subunit identified by similarity to SP:O84971%3B match to protein family HMM PF00329%3B match to protein family HMM TIGR01961 gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0521 APH_0522 APH_0522 APH_0522 541993 542106 - hypothetical protein identified by Glimmer2%3B putative gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0522 APH_0523 APH_0523 APH_0523 543188 543316 + hypothetical protein identified by Glimmer2%3B putative gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0523 APH_0524 APH_0524 surE surE 544557 545264 + stationary-phase survival protein SurE identified by similarity to SP:P36664%3B match to protein family HMM PF01975%3B match to protein family HMM TIGR00087 gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0524 APH_0525 APH_0525 APH_0525 545280 545411 + conserved domain protein gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0525 APH_0526 APH_0526 ccmE ccmE 545395 545820 + cytochrome c-type biogenesis protein CcmE identified by similarity to SP:P45402%3B match to protein family HMM PF03100 gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0526 APH_0527 APH_0527 pyrF pyrF 546629 547315 - orotidine 5'-phosphate decarboxylase identified by similarity to SP:Q59654%3B match to protein family HMM PF00215%3B match to protein family HMM TIGR01740 gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0527 APH_0528 APH_0528 APH_0528 547281 548093 - hydrolase%2C TatD family identified by similarity to SP:P37346%3B match to protein family HMM PF01026%3B match to protein family HMM TIGR00010 gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0528 APH_0529 APH_0529 APH_0529 548284 548382 + hypothetical protein identified by Glimmer2%3B putative gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0529 APH_0530 APH_0530 APH_0530 548560 548799 + hydrolase%2C TatD family%2C truncated identified by similarity to SP:P37346 gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0530 APH_0531 APH_0531 APH_0531 548882 549013 - hypothetical protein identified by Glimmer2%3B putative gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0531 APH_0532 APH_0532 APH_0532 549611 549745 - hypothetical protein identified by Glimmer2%3B putative gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0532 APH_0533 APH_0533 APH_0533 549782 549880 - hypothetical protein identified by Glimmer2%3B putative gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0533 APH_0534 APH_0534 leuS leuS 549909 552422 - leucyl-tRNA synthetase identified by similarity to SP:P56457%3B match to protein family HMM PF00133%3B match to protein family HMM TIGR00396 gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0534 APH_0535 APH_0535 p44-82 p44-82 552485 552676 + P44-82 outer membrane protein%2C truncated p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0535 APH_0536 APH_0536 APH_0536 554409 554881 + nicotinate-nucleotide pyrophosphorylase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error%3B identified by similarity to SP:P77938 pseudogene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0536 APH_0537 APH_0537 uvrA uvrA 555227 558091 - excinuclease ABC%2C A subunit identified by similarity to SP:O34863%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR00630 gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0537 APH_0538 APH_0538 nusB nusB 558120 558968 - N utilization substance protein B identified by match to protein family HMM PF01029 gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0538 APH_0539 APH_0539 ribH ribH 558970 559428 - 6%2C7-dimethyl-8-ribityllumazine synthase identified by match to protein family HMM PF00885%3B match to protein family HMM TIGR00114 gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0539 APH_0540 APH_0540 APH_0540 559441 561147 - inner membrane protein%2C 60 kDa identified by match to protein family HMM PF02096 gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0540 APH_0541 APH_0541 APH_0541 561872 562240 + putative membrane protein identified by match to protein family HMM PF02096 gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0541 APH_0542 APH_0542 APH_0542 562470 562781 + putative NADH-quinone oxidoreductase%2C degenerate Peptides match to this protein was detected in human HL-60 cells by global proteomic analysis. gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0542 APH_0543 APH_0543 pssA pssA 563130 563924 - CDP-diacylglycerol--serine O-phosphatidyltransferase identified by match to protein family HMM PF01066%3B match to protein family HMM TIGR00473 gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0543 APH_0544 APH_0544 APH_0544 564038 564721 - putative phosphatidylserine decarboxylase identified by match to protein family HMM PF02666%3B match to protein family HMM TIGR00164 gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0544 APH_0545 APH_0545 APH_0545 565362 568733 - heme/FAD-binding domain protein identified by similarity to GB:CAD84769.1%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0545 APH_0546 APH_0546 APH_0546 569265 572576 - conserved domain protein gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0546 APH_0547 APH_0547 efp efp 573226 573792 + translation elongation factor P identified by match to protein family HMM PF01132%3B match to protein family HMM TIGR00038 gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0547 APH_0548 APH_0548 APH_0548 573795 574565 + putative inositol monophosphatase gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0548 APH_0549 APH_0549 rluC rluC 574601 575494 + ribosomal large subunit pseudouridine synthase C identified by similarity to SP:P23851%3B match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005 gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0549 APH_0550 APH_0550 APH_0550 575543 575656 + hypothetical protein identified by Glimmer2%3B putative gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0550 APH_0551 APH_0551 pleD pleD 576134 577504 - Response regulator/GGDEF domain protein PleD Name change according to the cited literature. PMID: 16882029 gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0551 APH_0552 APH_0552 APH_0552 577663 578103 - putative twin-arginine translocation protein TatB identified by similarity to SP:O69415%3B match to protein family HMM PF02416 gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0552 APH_0553 APH_0553 APH_0553 578096 582982 - NAD-glutamate dehydrogenase family protein identified by match to protein family HMM PF05088 gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0553 APH_0554 APH_0554 APH_0554 584245 584973 + putative exopolysaccharide synthesis protein ExoD identified by similarity to SP:Q52923%3B match to protein family HMM PF06055 gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0554 APH_0555 APH_0555 cysS cysS 584970 586358 + cysteinyl-tRNA synthetase identified by similarity to SP:P21888%3B match to protein family HMM PF01406%3B match to protein family HMM TIGR00435 gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0555 APH_0556 APH_0556 APH_0556 586410 586523 + hypothetical protein identified by Glimmer2%3B putative gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0556 APH_0557 APH_0557 APH_0557 586847 587041 - hypothetical protein identified by Glimmer2%3B putative gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0557 APH_0558 APH_0558 APH_0558 587579 587671 + hypothetical protein identified by Glimmer2%3B putative gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0558 APH_0559 APH_0559 APH_0559 587689 587784 + hypothetical protein identified by Glimmer2%3B putative gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0559 APH_0560 APH_0560 nrdB nrdB 588436 589407 + ribonucleoside-diphosphate reductase%2C beta subunit identified by match to protein family HMM PF00268 gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0560 APH_0561 APH_0561 APH_0561 589358 589990 + putative thiol-disulfide oxidoreductase identified by similarity to SP:P35160 gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0561 APH_0562 APH_0562 APH_0562 590947 591096 - hypothetical protein identified by Glimmer2%3B putative gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0562 APH_0563 APH_0563 APH_0563 591510 591620 + hypothetical protein identified by Glimmer2%3B putative gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0563 APH_0564 APH_0564 APH_0564 592508 592681 - arginyl-tRNA synthetase%2C degenerate Peptides match to this protein was detected in human HL-60 cells by global proteomic analysis. gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0564 APH_0565 APH_0565 APH_0565 592891 593172 - conserved hypothetical protein identified by similarity to GB:AAS14408.1 gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0565 APH_0566 APH_0566 APH_0566 593577 594557 + conserved hypothetical protein identified by similarity to GB:AAS14410.1%3B match to protein family HMM PF02636 gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0566 APH_0567 APH_0567 APH_0567 595561 595686 - hypothetical protein identified by Glimmer2%3B putative gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0567 APH_0568 APH_0568 APH_0568 596216 596404 - hypothetical protein identified by Glimmer2%3B putative gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0568 APH_0569 APH_0569 APH_0569 596752 596904 + hypothetical protein identified by Glimmer2%3B putative gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0569 APH_0570 APH_0570 APH_0570 596965 597129 + hypothetical protein identified by Glimmer2%3B putative gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0570 APH_0571 APH_0571 dnaG dnaG 597914 599737 + DNA primase identified by similarity to SP:O33470%3B match to protein family HMM PF01751%3B match to protein family HMM PF01807%3B match to protein family HMM TIGR01391 gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0571 APH_0572 APH_0572 APH_0572 600532 600936 - DNA mismatch repair protein MutS%2C truncated identified by match to protein family HMM PF00488 gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0572 APH_0573 APH_0573 APH_0573 601216 601332 + hypothetical protein identified by Glimmer2%3B putative gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0573 APH_0574 APH_0574 ispE ispE 601526 602416 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase identified by match to protein family HMM PF00288%3B match to protein family HMM TIGR00154 gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0574 APH_0575 APH_0575 APH_0575 602609 603556 + putative tRNA-dihydrouridine synthase identified by match to protein family HMM PF01207%3B match to protein family HMM TIGR00737 gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0575 APH_0576 APH_0576 rpoD rpoD 603773 605656 + RNA polymerase sigma factor RpoD identified by similarity to SP:Q59753%3B match to protein family HMM PF00140%3B match to protein family HMM PF03979%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02393 gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0576 APH_0577 APH_0577 APH_0577 606138 606272 - hypothetical protein identified by Glimmer2%3B putative gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0577 APH_0578 APH_0578 APH_0578 606910 607140 - hypothetical protein identified by Glimmer2%3B putative gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0578 APH_0579 APH_0579 APH_0579 607126 607974 + peptidase%2C M16 family%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0579 APH_0580 APH_0580 APH_0580 608001 608120 + hypothetical protein identified by Glimmer2%3B putative gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0580 APH_0581 APH_0581 cutA cutA 608223 608558 - periplasmic divalent cation tolerance protein CutA Update coordinate end3 to include the stop codon TAA. gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0581 APH_0582 APH_0582 cckA cckA 608606 611050 - Sensor histidine kinase/response regulator CckA Name change according to the cited literature. PMID: 16882029 gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0582 APH_0583 APH_0583 APH_0583 611650 611748 - hypothetical protein identified by Glimmer2%3B putative gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0583 APH_0584 APH_0584 APH_0584 612385 613041 - O-methyltransferase family protein identified by match to protein family HMM PF01596 gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0584 APH_0585 APH_0585 APH_0585 613317 613610 + conserved hypothetical protein identified by similarity to GB:AAS14713.1 gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0585 APH_0586 APH_0586 APH_0586 615023 615529 + thiamine biosynthesis protein ThiC%2C truncated identified by similarity to SP:P30136 gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0586 APH_0587 APH_0587 APH_0587 615501 615644 + hypothetical protein identified by Glimmer2%3B putative gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0587 APH_0588 APH_0588 APH_0588 615691 617070 + YjeF family protein identified by match to protein family HMM PF01256%3B match to protein family HMM PF03853%3B match to protein family HMM TIGR00196%3B match to protein family HMM TIGR00197 gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0588 APH_0589 APH_0589 APH_0589 617659 617793 + hypothetical protein identified by Glimmer2%3B putative gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0589 APH_0590 APH_0590 APH_0590 618053 618160 + hypothetical protein identified by Glimmer2%3B putative gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0590 APH_0591 APH_0591 APH_0591 618193 618414 + hypothetical protein identified by Glimmer2%3B putative gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0591 APH_0592 APH_0592 APH_0592 618447 618587 + hypothetical protein identified by Glimmer2%3B putative gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0592 APH_0593 APH_0593 APH_0593 618748 618864 + hypothetical protein identified by Glimmer2%3B putative gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0593 APH_0594 APH_0594 APH_0594 618960 619592 - putative membrane protein gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0594 APH_0595 APH_0595 APH_0595 619838 619984 + hypothetical protein identified by Glimmer2%3B putative gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0595 APH_0596 APH_0596 APH_0596 620013 620189 + hypothetical protein identified by Glimmer2%3B putative gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0596 APH_0597 APH_0597 topA topA 620600 623035 + DNA topoisomerase I identified by similarity to SP:P39814%3B match to protein family HMM PF01131%3B match to protein family HMM PF01396%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01051 gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0597 APH_0598 APH_0598 APH_0598 623173 623277 - hypothetical protein identified by Glimmer2%3B putative gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0598 APH_0599 APH_0599 APH_0599 625508 625603 - hypothetical protein identified by Glimmer2%3B putative gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0599 APH_0600 APH_0600 thiC thiC 626150 627823 - thiamine biosynthesis protein ThiC identified by similarity to SP:P45740%3B match to protein family HMM PF01964%3B match to protein family HMM TIGR00190 gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0600 APH_0601 APH_0601 APH_0601 630176 630439 - conserved hypothetical protein identified by similarity to GB:AAS13958.1 gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0601 APH_0602 APH_0602 APH_0602 630549 630683 + hypothetical protein identified by Glimmer2%3B putative gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0602 APH_0603 APH_0603 APH_0603 630967 631125 - hypothetical protein identified by Glimmer2%3B putative gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0603 APH_0604 APH_0604 APH_0604 631478 631591 - hypothetical protein identified by Glimmer2%3B putative gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0604 APH_0605 APH_0605 APH_0605 631744 631860 - hypothetical protein identified by Glimmer2%3B putative gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0605 APH_0606 APH_0606 ubiG ubiG 632557 633267 - 3-demethylubiquinone-9 3-methyltransferase identified by similarity to SP:P17993%3B match to protein family HMM PF02353%3B match to protein family HMM TIGR01983 gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0606 APH_0607 APH_0607 lysS lysS 633323 634867 - lysyl-tRNA synthetase identified by similarity to SP:O27585%3B match to protein family HMM PF01921%3B match to protein family HMM TIGR00467 gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0607 APH_0608 APH_0608 APH_0608 635244 637049 - ppiC/parvulin rotamase family protein identified by similarity to SP:P77241 gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0608 APH_0609 APH_0609 APH_0609 637338 637439 - hypothetical protein identified by Glimmer2%3B putative gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0609 APH_0610 APH_0610 APH_0610 639128 639715 - glycoprotease family protein identified by match to protein family HMM PF00814 gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0610 APH_0611 APH_0611 APH_0611 639733 640917 - putative membrane protein gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0611 APH_0612 APH_0612 APH_0612 641085 642284 - putative membrane protein gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0612 APH_0613 APH_0613 APH_0613 642332 642405 - tRNA-Arg tRNA gene609 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0613 APH_0614 APH_0614 APH_0614 642930 643679 + putative rod shape-determining protein identified by match to protein family HMM PF04085 gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0614 APH_0615 APH_0615 APH_0615 643654 644259 - hypothetical protein identified by Glimmer2%3B putative gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0615 APH_0616 APH_0616 APH_0616 646353 646444 + tRNA-Ser tRNA gene612 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0616 APH_0617 APH_0617 APH_0617 646482 646808 + conserved hypothetical protein identified by similarity to GB:AAS14116.1 gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0617 APH_0618 APH_0618 APH_0618 647006 647119 + hypothetical protein identified by Glimmer2%3B putative gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0618 APH_0619 APH_0619 APH_0619 648384 648479 + hypothetical protein identified by Glimmer2%3B putative gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0619 APH_0620 APH_0620 APH_0620 648907 648999 + hypothetical protein identified by Glimmer2%3B putative gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0620 APH_0621 APH_0621 APH_0621 649094 649201 - hypothetical protein identified by Glimmer2%3B putative gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0621 APH_0622 APH_0622 ksgA ksgA 649502 650311 - dimethyladenosine transferase identified by similarity to SP:P06992%3B match to protein family HMM PF00398%3B match to protein family HMM TIGR00755 gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0622 APH_0623 APH_0623 APH_0623 650430 650503 + tRNA-Thr tRNA gene619 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0623 APH_0624 APH_0624 tpiA tpiA 650446 651252 + triosephosphate isomerase identified by similarity to SP:P04790%3B match to protein family HMM PF00121%3B match to protein family HMM TIGR00419 gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0624 APH_0625 APH_0625 APH_0625 651311 652279 + immunogenic protein identified by similarity to SP:P12920%3B match to protein family HMM TIGR02122 gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0625 APH_0626 APH_0626 APH_0626 652281 653309 + putative metalloendopeptidase%2C glycoprotease family identified by match to protein family HMM PF00814%3B match to protein family HMM TIGR00329 gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0626 APH_0627 APH_0627 APH_0627 653302 653907 - RDD family protein identified by match to protein family HMM PF06271 gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0627 APH_0628 APH_0628 folB folB 653978 654328 + dihydroneopterin aldolase identified by similarity to SP:P46362%3B match to protein family HMM PF02152%3B match to protein family HMM TIGR00526 gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0628 APH_0629 APH_0629 mdh mdh 654397 655362 + malate dehydrogenase%2C NAD-dependent identified by similarity to SP:P49814%3B match to protein family HMM PF00056%3B match to protein family HMM PF02866%3B match to protein family HMM TIGR01763 gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0629 APH_0630 APH_0630 APH_0630 655647 655763 + hypothetical protein identified by Glimmer2%3B putative gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0630 APH_0631 APH_0631 APH_0631 656221 656379 + hypothetical protein identified by Glimmer2%3B putative gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0631 APH_0632 APH_0632 p44-84a p44-84a 657791 658114 - P44-84a outer membrane protein%2C N-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0632 APH_0633 APH_0633 APH_0633 658192 658512 + hypothetical protein identified by Glimmer2%3B putative gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0633 APH_0634 APH_0634 APH_0634 658529 659086 + phage conserved hypothetical protein%2C phiE125 gp8 family identified by match to protein family HMM TIGR02215 gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0634 APH_0635 APH_0635 APH_0635 659083 659481 + hypothetical protein identified by Glimmer2%3B putative gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0635 APH_0636 APH_0636 APH_0636 659462 659851 + conserved hypothetical protein identified by similarity to GB:AAS13839.1 gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0636 APH_0637 APH_0637 APH_0637 659923 660045 - hypothetical protein identified by Glimmer2%3B putative gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0637 APH_0638 APH_0638 APH_0638 660763 660951 + hypothetical protein identified by Glimmer2%3B putative gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0638 APH_0639 APH_0639 APH_0639 661314 661385 + tRNA-Met tRNA gene636 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0639 APH_0640 APH_0640 APH_0640 663792 663902 + hypothetical protein identified by Glimmer2%3B putative gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0640 APH_0641 APH_0641 APH_0641 663853 664419 - hypothetical protein identified by Glimmer2%3B putative gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0641 APH_0642 APH_0642 rpiB rpiB 666581 667012 - ribose 5-phosphate isomerase B identified by similarity to SP:P37351%3B match to protein family HMM PF02502%3B match to protein family HMM TIGR00689%3B match to protein family HMM TIGR01120 gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0642 APH_0643 APH_0643 APH_0643 667318 667584 + hypothetical protein identified by Glimmer2%3B putative gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0643 APH_0644 APH_0644 APH_0644 668853 669086 + rod shape-determining protein MreB%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0644 APH_0645 APH_0645 APH_0645 669301 669393 - hypothetical protein identified by Glimmer2%3B putative gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0645 APH_0646 APH_0646 acpS acpS 669495 669863 - holo-(acyl-carrier-protein) synthase identified by similarity to SP:P24224%3B match to protein family HMM PF01648%3B match to protein family HMM TIGR00516%3B match to protein family HMM TIGR00556 gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0646 APH_0647 APH_0647 proS proS 669860 671140 - prolyl-tRNA synthetase identified by similarity to SP:P16659%3B match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00409 gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0647 APH_0648 APH_0648 APH_0648 671915 672925 - conserved hypothetical protein identified by similarity to GB:AAS14235.1 gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0648 APH_0649 APH_0649 APH_0649 672953 673023 - tRNA-Phe tRNA gene646 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0649 APH_0650 APH_0650 coaD coaD 673178 673684 + pantetheine-phosphate adenylyltransferase identified by similarity to SP:P23875%3B match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR01510 gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0650 APH_0651 APH_0651 APH_0651 673738 674332 + phosphopantetheine adenylyltransferase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:P23875 pseudogene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0651 APH_0652 APH_0652 APH_0652 674439 674546 + hypothetical protein identified by Glimmer2%3B putative gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0652 APH_0653 APH_0653 APH_0653 674705 675214 + hypothetical protein identified by Glimmer2%3B putative gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0653 APH_0654 APH_0654 APH_0654 675187 675297 + hypothetical protein identified by Glimmer2%3B putative gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0654 APH_0655 APH_0655 APH_0655 675288 675509 + hypothetical protein identified by Glimmer2%3B putative gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0655 APH_0656 APH_0656 APH_0656 675538 675801 + hypothetical protein identified by Glimmer2%3B putative gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0656 APH_0657 APH_0657 APH_0657 675947 676165 + hypothetical protein identified by Glimmer2%3B putative gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0657 APH_0658 APH_0658 trxB trxB 676565 677530 - thioredoxin-disulfide reductase identified by similarity to SP:P09625%3B match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01292 gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0658 APH_0659 APH_0659 APH_0659 677536 678147 - antioxidant%2C AhpC/Tsa family identified by match to protein family HMM PF00578 gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0659 APH_0660 APH_0660 aspC aspC 678443 679627 + aspartate aminotransferase identified by similarity to SP:Q02635%3B match to protein family HMM PF00155 gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0660 APH_0661 APH_0661 APH_0661 679950 680069 + hypothetical protein identified by Glimmer2%3B putative gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0661 APH_0662 APH_0662 p44-70 p44-70 680648 681976 + P44-70 outer membrane protein encodes a full-length P44 outer membrane protein gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0662 APH_0663 APH_0663 p44-71 p44-71 682036 683325 + P44-71 outer membrane protein encodes a full-length P44 outer membrane protein gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0663 APH_0664 APH_0664 p44-72 p44-72 683389 684696 + P44-72 outer membrane protein encodes a full-length P44 outer membrane protein gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0664 APH_0665 APH_0665 APH_0665 685494 685640 + hypothetical protein identified by Glimmer2%3B putative gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0665 APH_0666 APH_0666 APH_0666 685928 686119 - hypothetical protein identified by Glimmer2%3B putative gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0666 APH_0667 APH_0667 APH_0667 687131 687244 - hypothetical protein identified by Glimmer2%3B putative gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0667 APH_0668 APH_0668 fabG fabG 687395 688132 - 3-oxoacyl-(acyl-carrier-protein) reductase identified by similarity to SP:P25716%3B match to protein family HMM PF00106%3B match to protein family HMM TIGR01830 gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0668 APH_0669 APH_0669 putA putA 688365 691502 + proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase identified by similarity to SP:P09546%3B match to protein family HMM PF00171%3B match to protein family HMM PF01619%3B match to protein family HMM TIGR01238 gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0669 APH_0670 APH_0670 APH_0670 692944 693099 - hypothetical protein identified by Glimmer2%3B putative gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0670 APH_0671 APH_0671 APH_0671 693071 693781 - conserved hypothetical protein identified by similarity to PIR:A97789 gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0671 APH_0672 APH_0672 APH_0672 693873 693974 + hypothetical protein identified by Glimmer2%3B putative gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0672 APH_0673 APH_0673 APH_0673 694078 695538 + rrf2 family protein /cysteine desulfurase identified by similarity to GB:AAL10759.1%3B match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM PF02082 gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0673 APH_0674 APH_0674 iscS iscS 695567 696805 + cysteine desulfurase identified by similarity to SP:P39171%3B match to protein family HMM PF00266%3B match to protein family HMM PF01212 gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0674 APH_0675 APH_0675 iscU iscU 696821 697213 + FeS cluster assembly scaffold IscU identified by similarity to SP:P77310%3B match to protein family HMM PF01592%3B match to protein family HMM TIGR01999 gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0675 APH_0676 APH_0676 APH_0676 697239 697604 + iron-sulfur cluster assembly accessory protein identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049 gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0676 APH_0677 APH_0677 hscB hscB 697597 698037 + co-chaperone protein hscB identified by similarity to SP:P36540%3B match to protein family HMM PF00226 gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0677 APH_0678 APH_0678 hscA hscA 698028 699806 + chaperone protein HscA identified by similarity to SP:P36541%3B match to protein family HMM PF00012 gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0678 APH_0679 APH_0679 APH_0679 699861 700211 + iron-sulfur cluster-binding protein identified by match to protein family HMM PF00111 gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0679 APH_0680 APH_0680 APH_0680 700241 701410 + hypothetical protein identified by Glimmer2%3B putative gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0680 APH_0681 APH_0681 APH_0681 702017 702109 - hypothetical protein identified by Glimmer2%3B putative gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0681 APH_0682 APH_0682 APH_0682 702075 702224 - hypothetical protein identified by Glimmer2%3B putative gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0682 APH_0683 APH_0683 APH_0683 702931 705570 - conserved hypothetical protein identified by similarity to GB:AAS14108.1 gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0683 APH_0684 APH_0684 APH_0684 705884 706087 - hypothetical protein identified by Glimmer2%3B putative gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0684 APH_0685 APH_0685 APH_0685 706258 706353 + hypothetical protein identified by Glimmer2%3B putative gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0685 APH_0686 APH_0686 APH_0686 706501 706602 + hypothetical protein identified by Glimmer2%3B putative gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0686 APH_0687 APH_0687 APH_0687 706914 707321 + cytochrome c biogenesis family protein gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0687 APH_0688 APH_0688 APH_0688 709047 709883 + phage conserved hypothetical protein BR0599 identified by match to protein family HMM TIGR02218 gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0688 APH_0689 APH_0689 APH_0689 711102 711200 + hypothetical protein identified by Glimmer2%3B putative gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0689 APH_0690 APH_0690 mraW mraW 711865 712752 + S-adenosyl-methyltransferase MraW identified by match to protein family HMM PF01795%3B match to protein family HMM TIGR00006 gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0690 APH_0691 APH_0691 APH_0691 714592 714828 + hypothetical protein identified by Glimmer2%3B putative gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0691 APH_0692 APH_0692 APH_0692 714976 715146 + hypothetical protein identified by Glimmer2%3B putative gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0692 APH_0693 APH_0693 APH_0693 715600 716124 - 5-formyltetrahydrofolate cyclo-ligase family protein identified by match to protein family HMM PF01812%3B match to protein family HMM TIGR02727 gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0693 APH_0694 APH_0694 APH_0694 716645 717703 - GTP-binding protein%2C GTP1/Obg family identified by match to protein family HMM PF01018%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR02729 gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0694 APH_0695 APH_0695 eno eno 717708 718997 - enolase identified by similarity to SP:P37869%3B match to protein family HMM PF00113%3B match to protein family HMM PF03952%3B match to protein family HMM TIGR01060 gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0695 APH_0696 APH_0696 APH_0696 719248 719562 - conserved domain protein gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0696 APH_0697 APH_0697 rplU rplU 720063 720362 + ribosomal protein L21 identified by match to protein family HMM PF00829%3B match to protein family HMM TIGR00061 gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0697 APH_0698 APH_0698 rpmA rpmA 720366 720641 + ribosomal protein L27 identified by match to protein family HMM PF01016%3B match to protein family HMM TIGR00062 gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0698 APH_0699 APH_0699 APH_0699 720645 720720 + tRNA-Ile tRNA gene696 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0699 APH_0700 APH_0700 argS argS 722086 723828 + arginyl-tRNA synthetase identified by similarity to SP:P46906%3B match to protein family HMM PF00750%3B match to protein family HMM PF01406%3B match to protein family HMM PF03485%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00456 gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0700 APH_0701 APH_0701 APH_0701 724242 724364 + hypothetical protein identified by Glimmer2%3B putative gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0701 APH_0702 APH_0702 APH_0702 724699 724821 - hypothetical protein identified by Glimmer2%3B putative gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0702 APH_0703 APH_0703 APH_0703 725453 725614 - hypothetical protein identified by Glimmer2%3B putative gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0703 APH_0704 APH_0704 APH_0704 725646 725750 - hypothetical protein identified by Glimmer2%3B putative gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0704 APH_0705 APH_0705 pmbA pmbA 725959 727290 - pmbA protein identified by similarity to SP:P24231%3B match to protein family HMM PF01523 gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0705 APH_0706 APH_0706 folE folE 727300 727908 - GTP cyclohydrolase I identified by similarity to SP:P19465%3B match to protein family HMM PF01227 gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0706 APH_0707 APH_0707 atpG atpG 727913 728770 - ATP synthase F1%2C gamma subunit identified by match to protein family HMM PF00231 gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0707 APH_0708 APH_0708 APH_0708 729515 731284 - hypothetical protein identified by Glimmer2%3B putative gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0708 APH_0709 APH_0709 APH_0709 732572 742693 + ankyrin repeat protein identified by similarity to GB:AAP34830.1%3B match to protein family HMM PF00023 gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0709 APH_0710 APH_0710 APH_0710 742903 743004 - hypothetical protein identified by Glimmer2%3B putative gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0710 APH_0711 APH_0711 nuoH nuoH 743252 744274 - NADH dehydrogenase I%2C H subunit identified by match to protein family HMM PF00146 gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0711 APH_0712 APH_0712 nuoG nuoG 744321 746399 - NADH-quinone oxidoreductase%2C chain G identified by similarity to SP:P29915%3B match to protein family HMM PF00111%3B match to protein family HMM PF00384%3B match to protein family HMM TIGR01973 gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0712 APH_0713 APH_0713 APH_0713 746409 746762 - conserved hypothetical protein identified by similarity to GB:AAS13913.1 gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0713 APH_0714 APH_0714 APH_0714 746809 746952 - hypothetical protein identified by Glimmer2%3B putative gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0714 APH_0715 APH_0715 APH_0715 746983 747108 - hypothetical protein identified by Glimmer2%3B putative gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0715 APH_0716 APH_0716 gyrB gyrB 747172 749553 - DNA gyrase%2C B subunit identified by similarity to SP:P06982%3B match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01059 gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0716 APH_0717 APH_0717 APH_0717 750177 750383 - hypothetical protein identified by Glimmer2%3B putative gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0717 APH_0718 APH_0718 APH_0718 750402 752369 - hypothetical protein identified by Glimmer2%3B putative gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0718 APH_0719 APH_0719 APH_0719 752420 752566 - hypothetical protein identified by Glimmer2%3B putative gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0719 APH_0720 APH_0720 APH_0720 753157 762273 - hypothetical protein identified by Glimmer2%3B putative gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0720 APH_0721 APH_0721 APH_0721 763574 763678 - hypothetical protein identified by Glimmer2%3B putative gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0721 APH_0722 APH_0722 APH_0722 763668 763808 - hypothetical protein identified by Glimmer2%3B putative gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0722 APH_0723 APH_0723 APH_0723 764196 764975 - hypothetical protein identified by Glimmer2%3B putative gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0723 APH_0724 APH_0724 APH_0724 765105 768680 - hypothetical protein identified by Glimmer2%3B putative gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0724 APH_0725 APH_0725 APH_0725 769011 769136 - hypothetical protein identified by Glimmer2%3B putative gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0725 APH_0726 APH_0726 APH_0726 769457 771718 + hypothetical protein identified by Glimmer2%3B putative gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0726 APH_0727 APH_0727 APH_0727 772433 772531 + hypothetical protein identified by Glimmer2%3B putative gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0727 APH_0728 APH_0728 APH_0728 772580 773485 - putative membrane protein gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0728 APH_0729 APH_0729 APH_0729 773874 773945 + tRNA-Met tRNA gene726 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0729 APH_0730 APH_0730 dnaQ dnaQ 775329 776063 - DNA polymerase III%2C epsilon subunit identified by similarity to SP:P03007%3B match to protein family HMM PF00929%3B match to protein family HMM TIGR00573%3B match to protein family HMM TIGR01406 gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0730 APH_0731 APH_0731 nuoE nuoE 776053 776568 - NADH dehydrogenase I%2C E subunit identified by similarity to GB:CAA71011.1%3B match to protein family HMM PF01257%3B match to protein family HMM TIGR01958 gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0731 APH_0732 APH_0732 nuoD nuoD 776565 777752 - NADH dehydrogenase I%2C D subunit identified by match to protein family HMM PF00346%3B match to protein family HMM TIGR01962 gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0732 APH_0733 APH_0733 APH_0733 778109 778237 - hypothetical protein identified by Glimmer2%3B putative gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0733 APH_0734 APH_0734 APH_0734 778310 779326 + pyridine nucleotide-disulfide oxidoreductase family protein identified by match to protein family HMM PF00070%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992 gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0734 APH_0735 APH_0735 thiL thiL 780131 781087 + thiamine-monophosphate kinase identified by similarity to SP:P77785%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR01379 gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0735 APH_0736 APH_0736 APH_0736 781424 782161 + DNA repair protein RecO identified by match to protein family HMM TIGR00613 gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0736 APH_0737 APH_0737 APH_0737 782378 782839 + hypothetical protein identified by Glimmer2%3B putative gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0737 APH_0738 APH_0738 APH_0738 783176 783247 - tRNA-Met tRNA gene735 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0738 APH_0739 APH_0739 APH_0739 784257 784610 - hypothetical protein identified by Glimmer2%3B putative gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0739 APH_0740 APH_0740 ankA ankA 784800 788498 - Ankyrin-repeat protein AnkA Name change according to the cited literature. PMID: 10921951%2C 10948155%2C 17587335. gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0740 APH_0741 APH_0741 APH_0741 789046 789180 - hypothetical protein identified by Glimmer2%3B putative gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0741 APH_0742 APH_0742 APH_0742 789495 789644 - hypothetical protein identified by Glimmer2%3B putative gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0742 APH_0743 APH_0743 APH_0743 789719 789943 - hypothetical protein identified by Glimmer2%3B putative gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0743 APH_0744 APH_0744 APH_0744 789976 790137 - hypothetical protein identified by Glimmer2%3B putative gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0744 APH_0745 APH_0745 murB murB 790410 791318 - UDP-N-acetylenolpyruvoylglucosamine reductase identified by similarity to SP:P18579%3B match to protein family HMM PF01565%3B match to protein family HMM PF02873%3B match to protein family HMM TIGR00179 gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0745 APH_0746 APH_0746 hemC hemC 791293 792207 - porphobilinogen deaminase identified by similarity to SP:P06983%3B match to protein family HMM PF01379%3B match to protein family HMM PF03900%3B match to protein family HMM TIGR00212 gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0746 APH_0747 APH_0747 folC folC 792404 793693 - folylpolyglutamate synthase identified by similarity to SP:Q05865%3B match to protein family HMM TIGR01499 gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0747 APH_0748 APH_0748 gatA gatA 794318 795793 + glutamyl-tRNA(Gln) amidotransferase%2C A subunit identified by similarity to SP:O06491%3B match to protein family HMM PF01425%3B match to protein family HMM TIGR00132 gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0748 APH_0749 APH_0749 ubiX ubiX 796559 797128 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase identified by similarity to SP:P09550%3B match to protein family HMM PF02441%3B match to protein family HMM TIGR00421 gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0749 APH_0750 APH_0750 APH_0750 797244 797477 + hypothetical protein identified by Glimmer2%3B putative gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0750 APH_0751 APH_0751 APH_0751 797503 797679 + hypothetical protein identified by Glimmer2%3B putative gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0751 APH_0752 APH_0752 APH_0752 797947 798096 - hypothetical protein identified by Glimmer2%3B putative gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0752 APH_0753 APH_0753 APH_0753 798211 798372 + hypothetical protein identified by Glimmer2%3B putative gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0753 APH_0754 APH_0754 APH_0754 798820 800373 - magnesium chelatase%2C subunit D/I family%2C ComM subfamily identified by match to protein family HMM PF01078%3B match to protein family HMM TIGR00368 gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0754 APH_0755 APH_0755 APH_0755 800560 801237 + hypothetical protein identified by Glimmer2%3B putative gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0755 APH_0756 APH_0756 APH_0756 801716 803695 + hypothetical protein identified by Glimmer2%3B putative gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0756 APH_0757 APH_0757 APH_0757 803751 803900 + hypothetical protein identified by Glimmer2%3B putative gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0757 APH_0758 APH_0758 APH_0758 804095 804214 + hypothetical protein identified by Glimmer2%3B putative gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0758 APH_0759 APH_0759 rpoH rpoH 805744 806613 - RNA polymerase sigma-32 factor identified by similarity to SP:P48194%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545 gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0759 APH_0760 APH_0760 APH_0760 806944 807111 - hypothetical protein identified by Glimmer2%3B putative gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0760 APH_0761 APH_0761 APH_0761 807157 808494 - phage uncharacterized protein identified by match to protein family HMM TIGR01630 gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0761 APH_0762 APH_0762 APH_0762 809594 809755 - hypothetical protein identified by Glimmer2%3B putative gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0762 APH_0763 APH_0763 APH_0763 809952 810053 - hypothetical protein identified by Glimmer2%3B putative gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0763 APH_0764 APH_0764 APH_0764 810767 810919 - hypothetical protein identified by Glimmer2%3B putative gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0764 APH_0765 APH_0765 lepA lepA 811008 812804 - GTP-binding protein LepA identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF06421%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01393 gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0765 APH_0766 APH_0766 APH_0766 813020 813805 - conserved hypothetical protein identified by similarity to GB:AAK22816.1 gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0766 APH_0767 APH_0767 pnp pnp 813811 816327 - polyribonucleotide nucleotidyltransferase identified by similarity to SP:P05055%3B match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM PF03726 gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0767 APH_0768 APH_0768 rpsO rpsO 816383 816664 - ribosomal protein S15 identified by similarity to SP:P05766%3B match to protein family HMM PF00312%3B match to protein family HMM TIGR00952 gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0768 APH_0769 APH_0769 truB truB 816699 817601 - tRNA pseudouridine synthase B identified by match to protein family HMM PF01509%3B match to protein family HMM TIGR00431 gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0769 APH_0770 APH_0770 mreB mreB 817859 818893 + rod shape-determining protein MreB identified by similarity to SP:Q01465%3B match to protein family HMM PF06723%3B match to protein family HMM TIGR00904 gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0770 APH_0771 APH_0771 APH_0771 819488 819946 - hypothetical protein identified by Glimmer2%3B putative gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0771 APH_0772 APH_0772 APH_0772 819961 820071 - hypothetical protein identified by Glimmer2%3B putative gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0772 APH_0773 APH_0773 APH_0773 820044 820553 - hypothetical protein identified by Glimmer2%3B putative gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0773 APH_0774 APH_0774 APH_0774 820579 820725 - hypothetical protein identified by Glimmer2%3B putative gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0774 APH_0775 APH_0775 APH_0775 820890 821363 - conserved hypothetical protein identified by similarity to PIR:E97838%3B match to protein family HMM PF07031 gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0775 APH_0776 APH_0776 APH_0776 821560 821850 - sRNA ncRNA gene773 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0776 APH_0777 APH_0777 APH_0777 821918 821989 - tRNA-Asn tRNA gene774 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0777 APH_0778 APH_0778 APH_0778 822560 822736 + hypothetical protein identified by Glimmer2%3B putative gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0778 APH_0779 APH_0779 APH_0779 822779 823009 + hypothetical protein identified by Glimmer2%3B putative gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0779 APH_0780 APH_0780 coaE coaE 823281 823955 - dephospho-CoA kinase identified by match to protein family HMM PF01121%3B match to protein family HMM TIGR00152 gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0780 APH_0781 APH_0781 APH_0781 824027 824293 + hypothetical protein identified by Glimmer2%3B putative gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0781 APH_0782 APH_0782 APH_0782 824480 825082 + Sua5/YciO/YrdC/YwlC family protein identified by match to protein family HMM PF01300%3B match to protein family HMM TIGR00057 gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0782 APH_0783 APH_0783 APH_0783 825070 825948 + conserved domain protein gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0783 APH_0784 APH_0784 hup hup 826141 826416 + DNA-binding protein HU identified by similarity to SP:P02346%3B match to protein family HMM PF00216 gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0784 APH_0785 APH_0785 APH_0785 826508 826651 + hypothetical protein identified by Glimmer2%3B putative gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0785 APH_0786 APH_0786 APH_0786 826760 826900 + hypothetical protein identified by Glimmer2%3B putative gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0786 APH_0787 APH_0787 APH_0787 827565 827690 + hypothetical protein identified by Glimmer2%3B putative gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0787 APH_0788 APH_0788 APH_0788 828693 828821 - hypothetical protein identified by Glimmer2%3B putative gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0788 APH_0789 APH_0789 APH_0789 828828 828923 + hypothetical protein identified by Glimmer2%3B putative gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0789 APH_0790 APH_0790 pdxJ pdxJ 829692 830393 - pyridoxal phosphate biosynthesis protein PdxJ identified by similarity to SP:P24223%3B match to protein family HMM PF03740 gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0790 APH_0791 APH_0791 APH_0791 830622 831158 - putative nicotinate (nicotinamide) nucleotide adenylyltransferase identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125 gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0791 APH_0792 APH_0792 APH_0792 831358 832392 + hypothetical protein identified by Glimmer2%3B putative gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0792 APH_0793 APH_0793 APH_0793 834124 836862 - hypothetical protein identified by Glimmer2%3B putative gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0793 APH_0794 APH_0794 APH_0794 838232 838951 - conserved hypothetical protein TIGR00046 identified by similarity to GB:AAS14858.1%3B match to protein family HMM PF04452%3B match to protein family HMM TIGR00046 gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0794 APH_0795 APH_0795 APH_0795 838979 839443 - antioxidant%2C AhpC/Tsa family identified by match to protein family HMM PF00578 gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0795 APH_0796 APH_0796 ileS ileS 839858 843202 + isoleucyl-tRNA synthetase identified by similarity to SP:Q10765%3B match to protein family HMM PF00133%3B match to protein family HMM TIGR00392 gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0796 APH_0797 APH_0797 APH_0797 843326 843481 - hypothetical protein identified by Glimmer2%3B putative gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0797 APH_0798 APH_0798 APH_0798 843430 843549 + hypothetical protein identified by Glimmer2%3B putative gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0798 APH_0799 APH_0799 APH_0799 843741 843911 - hypothetical protein identified by Glimmer2%3B putative gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0799 APH_0800 APH_0800 APH_0800 844341 844469 - hypothetical protein identified by Glimmer2%3B putative gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0800 APH_0801 APH_0801 nuoI nuoI 844832 845326 - NADH dehydrogenase I%2C I subunit identified by similarity to SP:P42031%3B match to protein family HMM PF00037%3B match to protein family HMM TIGR01971 gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0801 APH_0802 APH_0802 lepB lepB 845328 846059 - signal peptidase I identified by similarity to SP:P26844%3B match to protein family HMM PF00717%3B match to protein family HMM TIGR02227 gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0802 APH_0803 APH_0803 APH_0803 846082 846528 - iron-sulfur cluster assembly accessory protein identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049 gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0803 APH_0804 APH_0804 APH_0804 847775 847951 - hypothetical protein identified by Glimmer2%3B putative gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0804 APH_0805 APH_0805 APH_0805 848424 850964 + hypothetical protein identified by Glimmer2%3B putative gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0805 APH_0806 APH_0806 APH_0806 850980 851087 + hypothetical protein identified by Glimmer2%3B putative gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0806 APH_0807 APH_0807 APH_0807 851240 853024 + hypothetical protein identified by Glimmer2%3B putative gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0807 APH_0808 APH_0808 APH_0808 854136 856673 + hypothetical protein identified by Glimmer2%3B putative gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0808 APH_0809 APH_0809 APH_0809 856818 857030 - hypothetical protein identified by Glimmer2%3B putative gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0809 APH_0810 APH_0810 APH_0810 857464 857580 - hypothetical protein identified by Glimmer2%3B putative gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0810 APH_0811 APH_0811 APH_0811 857899 860214 + hypothetical protein identified by Glimmer2%3B putative gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0811 APH_0812 APH_0812 APH_0812 861914 863614 + hypothetical protein identified by Glimmer2%3B putative gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0812 APH_0813 APH_0813 APH_0813 863750 864301 + ATP synthase F1%2C gamma subunit%2C truncated identified by match to protein family HMM PF00231 gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0813 APH_0814 APH_0814 APH_0814 864306 864806 + GTP cyclohydrolase I identified by similarity to SP:Q54769%3B match to protein family HMM PF01227%3B contains internal deletion gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0814 APH_0815 APH_0815 APH_0815 865206 867134 + hypothetical protein identified by Glimmer2%3B putative gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0815 APH_0816 APH_0816 APH_0816 867236 867340 + hypothetical protein identified by Glimmer2%3B putative gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0816 APH_0817 APH_0817 APH_0817 867787 867912 + hypothetical protein identified by Glimmer2%3B putative gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0817 APH_0818 APH_0818 APH_0818 868040 868351 - hypothetical protein identified by Glimmer2%3B putative gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0818 APH_0819 APH_0819 APH_0819 868504 869916 + hypothetical protein identified by Glimmer2%3B putative gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0819 APH_0820 APH_0820 APH_0820 870122 871762 + hypothetical protein identified by Glimmer2%3B putative gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0820 APH_0821 APH_0821 APH_0821 872002 872244 - hypothetical protein identified by Glimmer2%3B putative gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0821 APH_0822 APH_0822 APH_0822 872228 872410 - hypothetical protein identified by Glimmer2%3B putative gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0822 APH_0823 APH_0823 APH_0823 872490 873500 - hypothetical protein identified by Glimmer2%3B putative gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0823 APH_0824 APH_0824 APH_0824 873733 874296 - hypothetical protein identified by Glimmer2%3B putative gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0824 APH_0825 APH_0825 APH_0825 874624 875628 - hypothetical protein identified by Glimmer2%3B putative gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0825 APH_0826 APH_0826 APH_0826 875739 875921 + hypothetical protein identified by Glimmer2%3B putative gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0826 APH_0827 APH_0827 APH_0827 877036 877434 + hypothetical protein identified by Glimmer2%3B putative gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0827 APH_0828 APH_0828 APH_0828 878347 878454 - hypothetical protein identified by Glimmer2%3B putative gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0828 APH_0829 APH_0829 APH_0829 878687 880057 + hypothetical protein identified by Glimmer2%3B putative gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0829 APH_0830 APH_0830 APH_0830 880818 880994 - hypothetical protein identified by Glimmer2%3B putative gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0830 APH_0831 APH_0831 APH_0831 881133 881237 - hypothetical protein identified by Glimmer2%3B putative gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0831 APH_0832 APH_0832 APH_0832 881299 882735 + hypothetical protein identified by Glimmer2%3B putative gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0832 APH_0833 APH_0833 APH_0833 883018 883362 + hypothetical protein identified by Glimmer2%3B putative gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0833 APH_0834 APH_0834 APH_0834 883362 883871 + hypothetical protein identified by Glimmer2%3B putative gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0834 APH_0835 APH_0835 APH_0835 883844 883954 + hypothetical protein identified by Glimmer2%3B putative gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0835 APH_0836 APH_0836 APH_0836 883969 884427 + hypothetical protein identified by Glimmer2%3B putative gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0836 APH_0837 APH_0837 APH_0837 884719 886128 + hypothetical protein identified by Glimmer2%3B putative gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0837 APH_0838 APH_0838 APH_0838 887127 888488 + hypothetical protein identified by Glimmer2%3B putative gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0838 APH_0839 APH_0839 APH_0839 889279 890607 + hypothetical protein identified by Glimmer2%3B putative gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0839 APH_0840 APH_0840 APH_0840 890654 890776 + hypothetical protein identified by Glimmer2%3B putative gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0840 APH_0841 APH_0841 APH_0841 891219 891371 - hypothetical protein identified by Glimmer2%3B putative gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0841 APH_0842 APH_0842 APH_0842 891462 892796 + hypothetical protein identified by Glimmer2%3B putative gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0842 APH_0843 APH_0843 APH_0843 893091 894434 + hypothetical protein identified by Glimmer2%3B putative gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0843 APH_0844 APH_0844 APH_0844 895326 895478 + hypothetical protein identified by Glimmer2%3B putative gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0844 APH_0845 APH_0845 APH_0845 895735 895842 - hypothetical protein identified by Glimmer2%3B putative gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0845 APH_0846 APH_0846 APH_0846 896377 896541 - hypothetical protein identified by Glimmer2%3B putative gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0846 APH_0847 APH_0847 APH_0847 897029 898558 + hypothetical protein identified by Glimmer2%3B putative gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0847 APH_0848 APH_0848 APH_0848 898794 900071 - major facilitator family transporter identified by match to protein family HMM PF00083 gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0848 APH_0849 APH_0849 APH_0849 900241 903051 - conserved hypothetical protein identified by similarity to GB:AAS14586.1 gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0849 APH_0850 APH_0850 APH_0850 903300 903446 - hypothetical protein identified by Glimmer2%3B putative gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0850 APH_0851 APH_0851 hemB hemB 903572 904564 + delta-aminolevulinic acid dehydratase identified by similarity to SP:P45622%3B match to protein family HMM PF00490 gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0851 APH_0852 APH_0852 APH_0852 904564 906366 + putative glutamine-dependent NAD(+) synthetase identified by similarity to SP:Q03638%3B match to protein family HMM PF00733%3B match to protein family HMM PF02540%3B match to protein family HMM TIGR00552 gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0852 APH_0853 APH_0853 APH_0853 906327 906620 - hypothetical protein identified by Glimmer2%3B putative gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0853 APH_0854 APH_0854 APH_0854 907064 907213 + hypothetical protein identified by Glimmer2%3B putative gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0854 APH_0855 APH_0855 APH_0855 908158 908295 - hypothetical protein identified by Glimmer2%3B putative gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0855 APH_0856 APH_0856 APH_0856 909128 909580 - putative biotin--acetyl-CoA-carboxylase ligase%2C truncated identified by similarity to GB:AAS14632.1 gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0856 APH_0857 APH_0857 mutS mutS 909789 912251 - DNA mismatch repair protein MutS identified by similarity to SP:P10339%3B match to protein family HMM PF00488%3B match to protein family HMM PF01624%3B match to protein family HMM PF05188%3B match to protein family HMM PF05190%3B match to protein family HMM PF05192%3B match to protein family HMM TIGR01070 gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0857 APH_0858 APH_0858 APH_0858 912397 912564 - hypothetical protein identified by Glimmer2%3B putative gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0858 APH_0859 APH_0859 ats-1 ats-1 912419 913549 + Anaplasma Translocated Substrate 1 (Ats-1) Name change according to the cited literature and GenBank accession number FJ210653. Edited start site from 912788 to 912419. PMID: 20174550 gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0859 APH_0860 APH_0860 APH_0860 913551 913925 + HIT family protein identified by match to protein family HMM PF01230 gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0860 APH_0861 APH_0861 APH_0861 914918 916249 + phage major capsid protein%2C HK97 family identified by match to protein family HMM PF05065%3B match to protein family HMM TIGR01554 gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0861 APH_0862 APH_0862 APH_0862 916763 916870 - hypothetical protein identified by Glimmer2%3B putative gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0862 APH_0863 APH_0863 sucA sucA 917632 920349 - 2-oxoglutarate dehydrogenase%2C E1 component identified by similarity to SP:P07015%3B match to protein family HMM PF00676%3B match to protein family HMM PF02779%3B match to protein family HMM TIGR00239 gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0863 APH_0864 APH_0864 APH_0864 920359 920484 - hypothetical protein identified by Glimmer2%3B putative gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0864 APH_0865 APH_0865 APH_0865 920826 920897 - tRNA-Gly tRNA gene862 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0865 APH_0866 APH_0866 APH_0866 921418 921546 + hypothetical protein identified by Glimmer2%3B putative gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0866 APH_0867 APH_0867 purB purB 921530 922828 + adenylosuccinate lyase identified by similarity to SP:P12047%3B match to protein family HMM PF00206%3B match to protein family HMM TIGR00928 gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0867 APH_0868 APH_0868 APH_0868 923159 923371 - hypothetical protein identified by Glimmer2%3B putative gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0868 APH_0869 APH_0869 APH_0869 923499 923597 + hypothetical protein identified by Glimmer2%3B putative gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0869 APH_0870 APH_0870 APH_0870 923795 924043 - hypothetical protein identified by Glimmer2%3B putative gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0870 APH_0871 APH_0871 APH_0871 924142 924240 - hypothetical protein identified by Glimmer2%3B putative gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0871 APH_0872 APH_0872 APH_0872 924368 924466 + hypothetical protein identified by Glimmer2%3B putative gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0872 APH_0873 APH_0873 APH_0873 924565 924675 - hypothetical protein identified by Glimmer2%3B putative gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0873 APH_0874 APH_0874 APH_0874 924684 927827 - hypothetical protein identified by Glimmer2%3B putative gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0874 APH_0875 APH_0875 APH_0875 929043 929180 - hypothetical protein identified by Glimmer2%3B putative gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0875 APH_0876 APH_0876 APH_0876 930013 930738 - biotin--acetyl-CoA-carboxylase ligase identified by match to protein family HMM PF03099%3B match to protein family HMM TIGR00121 gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0876 APH_0877 APH_0877 APH_0877 931488 931580 - hypothetical protein identified by Glimmer2%3B putative gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0877 APH_0878 APH_0878 APH_0878 932795 934054 + putative membrane protein gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0878 APH_0879 APH_0879 APH_0879 935172 935423 + hypothetical protein identified by Glimmer2%3B putative gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0879 APH_0880 APH_0880 miaB miaB 935608 936942 - tRNA-i(6)A37 thiotransferase enzyme MiaB identified by match to protein family HMM PF00919%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01574 gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0880 APH_0881 APH_0881 APH_0881 938015 938158 - hypothetical protein identified by Glimmer2%3B putative gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0881 APH_0882 APH_0882 APH_0882 938803 939003 - hypothetical protein identified by Glimmer2%3B putative gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0882 APH_0883 APH_0883 APH_0883 939080 939199 - hypothetical protein identified by Glimmer2%3B putative gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0883 APH_0884 APH_0884 uvrC uvrC 939819 941663 + excinuclease ABC%2C C subunit identified by similarity to SP:P07028%3B match to protein family HMM PF00633%3B match to protein family HMM PF01541%3B match to protein family HMM TIGR00194 gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0884 APH_0885 APH_0885 APH_0885 942890 942988 + hypothetical protein identified by Glimmer2%3B putative gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0885 APH_0886 APH_0886 APH_0886 944812 944922 - hypothetical protein identified by Glimmer2%3B putative gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0886 APH_0887 APH_0887 APH_0887 945345 945452 - hypothetical protein identified by Glimmer2%3B putative gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0887 APH_0888 APH_0888 APH_0888 945698 945796 - hypothetical protein identified by Glimmer2%3B putative gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0888 APH_0889 APH_0889 APH_0889 945937 946044 + type IV secretion system protein VirB4%2C degenerate%3B this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error pseudogene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0889 APH_0890 APH_0890 APH_0890 947368 947520 + hypothetical protein identified by Glimmer2%3B putative gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0890 APH_0891 APH_0891 APH_0891 947512 947610 - hypothetical protein identified by Glimmer2%3B putative gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0891 APH_0892 APH_0892 APH_0892 947649 947765 - hypothetical protein identified by Glimmer2%3B putative gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0892 APH_0893 APH_0893 htpG htpG 948535 950448 - chaperone protein HtpG identified by similarity to SP:P10413%3B match to protein family HMM PF00183%3B match to protein family HMM PF02518 gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0893 APH_0894 APH_0894 APH_0894 950535 951143 - conserved hypothetical protein identified by similarity to GB:AAS14866.1 gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0894 APH_0895 APH_0895 APH_0895 951469 951894 + putative transporter%2C truncated gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0895 APH_0896 APH_0896 APH_0896 952397 952687 - hypothetical protein identified by Glimmer2%3B putative gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0896 APH_0897 APH_0897 nth nth 952813 953442 - endonuclease III identified by similarity to SP:P20625%3B match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR01083 gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0897 APH_0898 APH_0898 APH_0898 953861 953995 - hypothetical protein identified by Glimmer2%3B putative gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0898 APH_0899 APH_0899 gyrA gyrA 954325 957045 - DNA gyrase%2C A subunit identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01063 gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0899 APH_0900 APH_0900 p44-57 p44-57 957240 958070 + P44-57 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0900 APH_0901 APH_0901 APH_0901 958242 958349 - hypothetical protein identified by Glimmer2%3B putative gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0901 APH_0902 APH_0902 p44-73 p44-73 958558 959106 + P44-73 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0902 APH_0903 APH_0903 APH_0903 959318 961297 + helicase%2C UvrD/Rep family identified by match to protein family HMM PF00580 gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0903 APH_0904 APH_0904 APH_0904 961651 961869 + hypothetical protein identified by Glimmer2%3B putative gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0904 APH_0905 APH_0905 APH_0905 962047 963528 + hypothetical protein identified by Glimmer2%3B putative gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0905 APH_0906 APH_0906 APH_0906 965395 969981 + hypothetical protein identified by Glimmer2%3B putative gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0906 APH_0907 APH_0907 APH_0907 970246 970569 - hypothetical protein identified by Glimmer2%3B putative gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0907 APH_0908 APH_0908 APH_0908 970709 970858 + hypothetical protein identified by Glimmer2%3B putative gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0908 APH_0909 APH_0909 APH_0909 970931 971944 + putative twitching motility protein identified by similarity to GB:AAB30824.1 gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0909 APH_0910 APH_0910 trmU trmU 972352 973488 + tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase identified by match to protein family HMM PF03054%3B match to protein family HMM TIGR00420 gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0910 APH_0911 APH_0911 APH_0911 974125 974619 - Coq7 family protein gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0911 APH_0912 APH_0912 APH_0912 974949 975041 - hypothetical protein identified by Glimmer2%3B putative gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0912 APH_0913 APH_0913 APH_0913 975057 975254 - hypothetical protein identified by Glimmer2%3B putative gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0913 APH_0914 APH_0914 APH_0914 975927 977708 + hypothetical protein identified by Glimmer2%3B putative gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0914 APH_0915 APH_0915 APH_0915 978591 979658 + hypothetical protein identified by Glimmer2%3B putative gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0915 APH_0916 APH_0916 APH_0916 980404 981213 + hypothetical protein identified by Glimmer2%3B putative gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0916 APH_0917 APH_0917 APH_0917 981348 981872 - hypothetical protein identified by Glimmer2%3B putative gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0917 APH_0918 APH_0918 APH_0918 982284 983144 + hypothetical protein identified by Glimmer2%3B putative gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0918 APH_0919 APH_0919 APH_0919 983631 984767 + putative membrane protein gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0919 APH_0920 APH_0920 APH_0920 985713 985847 + hypothetical protein identified by Glimmer2%3B putative gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0920 APH_0921 APH_0921 APH_0921 986295 986429 - hypothetical protein identified by Glimmer2%3B putative gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0921 APH_0922 APH_0922 APH_0922 987164 988525 - putative membrane protein gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0922 APH_0923 APH_0923 APH_0923 988744 989217 - disulfide bond formation protein%2C DsbB family identified by match to protein family HMM PF02600 gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0923 APH_0924 APH_0924 APH_0924 989361 990089 - putative membrane protein gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0924 APH_0925 APH_0925 rpmG rpmG 990231 990401 + ribosomal protein L33 identified by similarity to SP:P02436%3B match to protein family HMM PF00471%3B match to protein family HMM TIGR01023 gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0925 APH_0926 APH_0926 APH_0926 990414 990575 + hypothetical protein identified by Glimmer2%3B putative gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0926 APH_0927 APH_0927 APH_0927 991787 992062 - hypothetical protein identified by Glimmer2%3B putative gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0927 APH_0928 APH_0928 APH_0928 992052 994712 - ankyrin repeat protein identified by match to protein family HMM PF00023 gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0928 APH_0929 APH_0929 APH_0929 995597 995851 + putative acyl carrier protein identified by match to protein family HMM PF00550 gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0929 APH_0930 APH_0930 fabF fabF 995981 997252 + 3-oxoacyl-(acyl-carrier-protein) synthase II identified by similarity to SP:P39435%3B match to protein family HMM PF00109%3B match to protein family HMM PF02801 gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0930 APH_0931 APH_0931 APH_0931 997365 997472 + hypothetical protein identified by Glimmer2%3B putative gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0931 APH_0932 APH_0932 APH_0932 997519 997683 - hypothetical protein identified by Glimmer2%3B putative gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0932 APH_0933 APH_0933 APH_0933 997990 999024 + putative DNA processing protein DprA identified by match to protein family HMM PF02481%3B match to protein family HMM TIGR00732 gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0933 APH_0934 APH_0934 p44-34 p44-34 999986 1000516 + P44-34 outer membrane protein%2C silent silent p44 gene encodes a truncated P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0934 APH_0935 APH_0935 p44-85 p44-85 1000509 1000841 + P44-85 outer membrane protein%2C truncated p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0935 APH_0936 APH_0936 p44-86 p44-86 1000834 1001250 + P44-86 outer membrane protein%2C truncated p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0936 APH_0937 APH_0937 APH_0937 1001552 1001701 - hypothetical protein identified by Glimmer2%3B putative gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0937 APH_0938 APH_0938 p44-C p44-C 1001717 1002064 + P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0938 APH_0939 APH_0939 mutL mutL 1002237 1004141 - DNA mismatch repair protein MutL identified by match to protein family HMM PF01119%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00585 gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0939 APH_0940 APH_0940 tolQ tolQ 1004418 1005122 + TolQ protein identified by similarity to SP:P05828%3B match to protein family HMM PF01618 gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0940 APH_0941 APH_0941 APH_0941 1005421 1006248 + TonB family protein gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0941 APH_0942 APH_0942 APH_0942 1006313 1006426 + hypothetical protein identified by Glimmer2%3B putative gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0942 APH_0943 APH_0943 APH_0943 1006855 1006947 - hypothetical protein identified by Glimmer2%3B putative gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0943 APH_0944 APH_0944 pleC pleC 1007568 1008980 - Sensor histidine kinase PleC Name change according to the cited literature. PMID: 16882029 gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0944 APH_0945 APH_0945 argD argD 1009136 1010311 + acetylornithine/succinyldiaminopimelate aminotransferase identified by similarity to SP:P40732%3B match to protein family HMM PF00202 gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0945 APH_0946 APH_0946 APH_0946 1010744 1010920 + hypothetical protein identified by Glimmer2%3B putative gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0946 APH_0947 APH_0947 APH_0947 1011165 1011257 - hypothetical protein identified by Glimmer2%3B putative gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0947 APH_0948 APH_0948 APH_0948 1011491 1011655 - hypothetical protein identified by Glimmer2%3B putative gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0948 APH_0949 APH_0949 APH_0949 1012194 1013345 + putative membrane protein gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0949 APH_0950 APH_0950 APH_0950 1013774 1013941 + hypothetical protein identified by Glimmer2%3B putative gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0950 APH_0951 APH_0951 p44-C p44-C 1014245 1014418 + P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0951 APH_0952 APH_0952 APH_0952 1014732 1014824 + hypothetical protein identified by Glimmer2%3B putative gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0952 APH_0953 APH_0953 p44-C p44-C 1014850 1015083 + P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0953 APH_0954 APH_0954 APH_0954 1016074 1016226 - hypothetical protein identified by Glimmer2%3B putative gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0954 APH_0955 APH_0955 APH_0955 1016456 1018963 - FtsK/SpoIIIE family protein identified by match to protein family HMM PF01580 gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0955 APH_0956 APH_0956 APH_0956 1019182 1019460 - YGGT family protein identified by match to protein family HMM PF02325 gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0956 APH_0957 APH_0957 APH_0957 1019633 1020901 + CBS/transporter associated domain protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471 gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0957 APH_0958 APH_0958 APH_0958 1021473 1021580 + hypothetical protein identified by Glimmer2%3B putative gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0958 APH_0959 APH_0959 APH_0959 1021897 1021992 + hypothetical protein identified by Glimmer2%3B putative gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0959 APH_0960 APH_0960 thiE thiE 1022330 1022932 - thiamine-phosphate pyrophosphorylase identified by match to protein family HMM PF02581%3B match to protein family HMM TIGR00693 gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0960 APH_0961 APH_0961 APH_0961 1023559 1024401 - conserved hypothetical protein identified by similarity to GB:AAS14071.1%3B match to protein family HMM PF03618 gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0961 APH_0962 APH_0962 APH_0962 1024549 1025388 - rhodanese domain protein identified by match to protein family HMM PF00581 gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0962 APH_0963 APH_0963 APH_0963 1025421 1025612 - hypothetical protein identified by Glimmer2%3B putative gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0963 APH_0964 APH_0964 APH_0964 1025792 1026289 - collagen triple helix repeat protein identified by match to protein family HMM PF01391 gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0964 APH_0965 APH_0965 fmt fmt 1026349 1027254 - methionyl-tRNA formyltransferase identified by similarity to SP:P23882%3B match to protein family HMM PF00551%3B match to protein family HMM PF02911%3B match to protein family HMM TIGR00460 gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0965 APH_0966 APH_0966 APH_0966 1027364 1027436 - tRNA-Met tRNA gene963 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0966 APH_0967 APH_0967 APH_0967 1027590 1027682 - hypothetical protein identified by Glimmer2%3B putative gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0967 APH_0968 APH_0968 lon lon 1027778 1030186 - ATP-dependent protease La identified by similarity to SP:P08177%3B match to protein family HMM PF00004%3B match to protein family HMM PF02190%3B match to protein family HMM PF05362%3B match to protein family HMM TIGR00763 gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0968 APH_0969 APH_0969 clpX clpX 1030173 1031420 - ATP-dependent Clp protease%2C ATP-binding subunit ClpX identified by similarity to SP:P50866%3B match to protein family HMM PF00004%3B match to protein family HMM PF06689%3B match to protein family HMM PF07724%3B match to protein family HMM TIGR00382 gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0969 APH_0970 APH_0970 clpP clpP 1031432 1032025 - ATP-dependent Clp protease%2C proteolytic subunit ClpP identified by similarity to SP:P19245%3B match to protein family HMM PF00574%3B match to protein family HMM TIGR00493 gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0970 APH_0971 APH_0971 APH_0971 1032081 1033400 - putative trigger factor identified by match to protein family HMM PF00254%3B match to protein family HMM PF05697 gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0971 APH_0972 APH_0972 APH_0972 1033436 1033518 - tRNA-Leu tRNA gene969 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0972 APH_0973 APH_0973 APH_0973 1033666 1033737 - tRNA-Lys tRNA gene970 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0973 APH_0974 APH_0974 pgpA pgpA 1034275 1034775 + phosphatidylglycerophosphatase A identified by similarity to SP:P18200%3B match to protein family HMM PF04608 gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0974 APH_0975 APH_0975 APH_0975 1034810 1035583 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0975 APH_0976 APH_0976 APH_0976 1035636 1036808 + conserved hypothetical protein identified by similarity to GB:AAS14420.1 gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0976 APH_0977 APH_0977 APH_0977 1036872 1037069 - conserved hypothetical protein gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0977 APH_0978 APH_0978 APH_0978 1037120 1037245 - hypothetical protein identified by Glimmer2%3B putative gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0978 APH_0979 APH_0979 APH_0979 1037655 1038476 + 8-amino-7-oxononanoate synthase%2C truncated identified by similarity to SP:P53556%3B match to protein family HMM PF00155 gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0979 APH_0980 APH_0980 p44-C p44-C 1038813 1039475 - P44 outer membrane protein%2C C-terminal fragment silent p44 gene encodes a truncated P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0980 APH_0981 APH_0981 p44-44 p44-44 1039468 1040085 - P44-44 outer membrane protein%2C silent silent p44 gene encodes a truncated P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0981 APH_0982 APH_0982 APH_0982 1040936 1041796 - putative cation ABC transporter%2C periplasmic cation-binding protein identified by similarity to SP:P39172%3B match to protein family HMM PF01297 gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0982 APH_0983 APH_0983 APH_0983 1041848 1042510 + putative cation ABC transporter%2C ATP-binding protein identified by similarity to SP:P52648%3B match to protein family HMM PF00005 gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0983 APH_0984 APH_0984 ubiB ubiB 1042503 1043954 + 2-polyprenylphenol 6-hydroxylase identified by similarity to SP:P27854%3B match to protein family HMM PF03109%3B match to protein family HMM TIGR01982 gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0984 APH_0985 APH_0985 APH_0985 1044125 1044661 - putative lipoprotein gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0985 APH_0986 APH_0986 APH_0986 1045231 1046259 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0986 APH_0987 APH_0987 tatA tatA 1046278 1046448 + twin-arginine translocation protein%2C TatA/E family identified by match to protein family HMM PF02416%3B match to protein family HMM TIGR01411 gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0987 APH_0988 APH_0988 recR recR 1046524 1047108 + recombination protein RecR identified by similarity to SP:P24277%3B match to protein family HMM PF01751%3B match to protein family HMM PF02132%3B match to protein family HMM TIGR00615 gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0988 APH_0989 APH_0989 rpsD rpsD 1048289 1048903 + ribosomal protein S4 identified by similarity to SP:P02354%3B match to protein family HMM PF00163%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR01017 gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0989 APH_0990 APH_0990 APH_0990 1048915 1049000 + tRNA-Leu tRNA gene988 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0990 APH_0991 APH_0991 APH_0991 1049210 1049326 + hypothetical protein identified by Glimmer2%3B putative gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0991 APH_0992 APH_0992 APH_0992 1050382 1050513 - hypothetical protein identified by Glimmer2%3B putative gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0992 APH_0993 APH_0993 thiD thiD 1051289 1052086 - phosphomethylpyrimidine kinase identified by match to protein family HMM TIGR00097 gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0993 APH_0994 APH_0994 APH_0994 1052079 1052741 - conserved hypothetical protein identified by similarity to GB:AAS14796.1 gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0994 APH_0995 APH_0995 APH_0995 1052746 1053837 - putative membrane protein identified by match to protein family HMM PF01594 gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0995 APH_0996 APH_0996 APH_0996 1054702 1054956 - hypothetical protein identified by Glimmer2%3B putative gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0996 APH_0997 APH_0997 APH_0997 1055038 1056405 - hypothetical protein identified by Glimmer2%3B putative gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0997 APH_0998 APH_0998 sdhD sdhD 1056603 1056932 - succinate dehydrogenase%2C hydrophobic membrane anchor protein identified by similarity to GB:AAC17941.1 gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0998 APH_0999 APH_0999 sdhC sdhC 1056936 1057319 - succinate dehydrogenase%2C cytochrome b556 subunit identified by match to protein family HMM PF01127 gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=APH_0999 APH_1000 APH_1000 rrsA rrsA 1057470 1058902 - 16S ribosomal RNA rRNA gene998 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1000 APH_1001 APH_1001 APH_1001 1059155 1060477 - putative 3-phosphoshikimate 1-carboxyvinyltransferase identified by similarity to GB:AAD45819.1 gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1001 APH_1002 APH_1002 APH_1002 1060500 1060601 - hypothetical protein identified by Glimmer2%3B putative gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1002 APH_1003 APH_1003 dnaE dnaE 1060729 1064112 - DNA polymerase III%2C alpha subunit identified by match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594 gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1003 APH_1004 APH_1004 APH_1004 1064397 1064669 + BolA protein identified by similarity to SP:P15298%3B match to protein family HMM PF01722 gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1004 APH_1005 APH_1005 APH_1005 1065139 1065282 + hypothetical protein identified by Glimmer2%3B putative gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1005 APH_1006 APH_1006 APH_1006 1065606 1065746 - hypothetical protein identified by Glimmer2%3B putative gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1006 APH_1007 APH_1007 APH_1007 1065923 1066036 - hypothetical protein identified by Glimmer2%3B putative gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1007 APH_1008 APH_1008 pdxH pdxH 1066132 1066752 - pyridoxamine 5'-phosphate oxidase identified by match to protein family HMM PF01243%3B match to protein family HMM TIGR00558 gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1008 APH_1009 APH_1009 APH_1009 1068084 1068230 - hypothetical protein identified by Glimmer2%3B putative gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1009 APH_1010 APH_1010 APH_1010 1068507 1069169 - phospholipase/carboxylesterase family protein identified by match to protein family HMM PF02230 gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1010 APH_1011 APH_1011 APH_1011 1070090 1070194 - hypothetical protein identified by Glimmer2%3B putative gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1011 APH_1012 APH_1012 APH_1012 1070312 1070905 - putative polypeptide deformylase identified by match to protein family HMM PF01327 gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1012 APH_1013 APH_1013 pyrD pyrD 1071160 1072212 + dihydroorotate dehydrogenase identified by match to protein family HMM PF01180%3B match to protein family HMM TIGR01036 gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1013 APH_1014 APH_1014 APH_1014 1072221 1073012 + putative transcriptional activator%2C Baf family identified by match to protein family HMM PF03309%3B match to protein family HMM TIGR00671 gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1014 APH_1015 APH_1015 APH_1015 1073279 1073779 - Na+/H+ ion antiporter family protein identified by match to protein family HMM PF01899 gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1015 APH_1016 APH_1016 bioF bioF 1074237 1075373 + 8-amino-7-oxononanoate synthase identified by similarity to SP:P53556%3B match to protein family HMM PF00155%3B match to protein family HMM PF00202 gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1016 APH_1017 APH_1017 APH_1017 1075449 1076720 - outer membrane protein%2C MSP2 family identified by match to protein family HMM PF01617 gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1017 APH_1018 APH_1018 p44-62 p44-62 1077971 1078723 - P44-62 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1018 APH_1019 APH_1019 APH_1019 1079128 1079253 - hypothetical protein identified by Glimmer2%3B putative gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1019 APH_1020 APH_1020 APH_1020 1079546 1079619 + tRNA-Arg tRNA gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1020 APH_1021 APH_1021 APH_1021 1079655 1080098 + conserved hypothetical protein identified by similarity to GB:AAS13900.1 gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1021 APH_1022 APH_1022 rnhB rnhB 1081522 1082154 + ribonuclease HII identified by similarity to SP:O31744%3B match to protein family HMM PF01351 gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1022 APH_1023 APH_1023 rpoC rpoC 1082696 1086925 - DNA-directed RNA polymerase%2C beta' subunit identified by similarity to SP:P00577%3B match to protein family HMM PF00623%3B match to protein family HMM PF04983%3B match to protein family HMM PF04997%3B match to protein family HMM PF04998%3B match to protein family HMM PF05000%3B match to protein family HMM TIGR02386 gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1023 APH_1024 APH_1024 rpoB rpoB 1086938 1091089 - DNA-directed RNA polymerase%2C beta subunit identified by similarity to SP:O52271%3B match to protein family HMM PF00562%3B match to protein family HMM PF04560%3B match to protein family HMM PF04561%3B match to protein family HMM PF04565%3B match to protein family HMM TIGR02013 gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1024 APH_1025 APH_1025 rplL rplL 1091129 1091533 - ribosomal protein L7/L12 identified by similarity to SP:P29396%3B match to protein family HMM PF00542 gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1025 APH_1026 APH_1026 rplJ rplJ 1091698 1092180 - ribosomal protein L10 identified by match to protein family HMM PF00466 gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1026 APH_1027 APH_1027 rplA rplA 1092212 1092862 - ribosomal protein L1 identified by similarity to SP:P04447%3B match to protein family HMM PF00687%3B match to protein family HMM TIGR01169 gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1027 APH_1028 APH_1028 rplK rplK 1092877 1093323 - ribosomal protein L11 identified by similarity to SP:Q06796%3B match to protein family HMM PF00298%3B match to protein family HMM PF03946%3B match to protein family HMM TIGR01632 gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1028 APH_1029 APH_1029 nusG nusG 1093328 1093888 - transcription termination/antitermination factor NusG identified by similarity to SP:P16921%3B match to protein family HMM PF00467%3B match to protein family HMM PF02357%3B match to protein family HMM TIGR00922 gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1029 APH_1030 APH_1030 secE secE 1093878 1094078 - preprotein translocase%2C SecE subunit identified by match to protein family HMM PF00584%3B match to protein family HMM TIGR00964 gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1030 APH_1031 APH_1031 APH_1031 1094099 1094172 - tRNA-Trp tRNA gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1031 APH_1032 APH_1032 tuf-2 tuf-2 1094197 1095378 - translation elongation factor Tu identified by similarity to SP:P48864%3B match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485 gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1032 APH_1033 APH_1033 fusA fusA 1095387 1097459 - translation elongation factor G identified by similarity to SP:P41084%3B match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484 gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1033 APH_1034 APH_1034 rpsG rpsG 1097495 1097977 - ribosomal protein S7 identified by similarity to SP:P02359%3B match to protein family HMM PF00177%3B match to protein family HMM TIGR01029 gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1034 APH_1035 APH_1035 rpsL rpsL 1097995 1098369 - ribosomal protein S12 identified by match to protein family HMM PF00164%3B match to protein family HMM TIGR00981 gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1035 APH_1036 APH_1036 APH_1036 1099468 1101099 + metallo-beta-lactamase family%2C beta-CASP subfamily identified by match to protein family HMM PF00753%3B match to protein family HMM PF07521 gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1036 APH_1037 APH_1037 APH_1037 1101089 1102396 + TolB family protein identified by match to protein family HMM PF04052%3B match to protein family HMM PF07676 gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1037 APH_1038 APH_1038 APH_1038 1102973 1103158 - hypothetical protein identified by Glimmer2%3B putative gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1038 APH_1039 APH_1039 APH_1039 1103347 1103442 + hypothetical protein identified by Glimmer2%3B putative gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1039 APH_1040 APH_1040 APH_1040 1104349 1104570 + putative cell division protein%2C degenerate Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1040 APH_1041 APH_1041 APH_1041 1104862 1104966 - hypothetical protein identified by Glimmer2%3B putative gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1041 APH_1042 APH_1042 APH_1042 1105431 1106135 + conserved hypothetical protein identified by similarity to GB:AAS14534.1%3B match to protein family HMM TIGR02396 gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1042 APH_1043 APH_1043 APH_1043 1106232 1107761 + type I secretion membrane fusion protein%2C HlyD family identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01843 gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1043 APH_1044 APH_1044 APH_1044 1108406 1108516 - hypothetical protein identified by Glimmer2%3B putative gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1044 APH_1045 APH_1045 APH_1045 1109370 1111004 - ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1045 APH_1046 APH_1046 APH_1046 1111207 1111329 - hypothetical protein identified by Glimmer2%3B putative gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1046 APH_1047 APH_1047 APH_1047 1111739 1111846 + hypothetical protein identified by Glimmer2%3B putative gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1047 APH_1048 APH_1048 fabK fabK 1112126 1113142 + enoyl-(acyl-carrier-protein) reductase II identified by similarity to GB:AAF98273.1%3B match to protein family HMM PF03060 gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1048 APH_1049 APH_1049 msp5 msp5 1113306 1113935 + major surface protein 5 identified by similarity to PIR:A49213%3B match to protein family HMM PF02630 gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1049 APH_1050 APH_1050 APH_1050 1113986 1115005 + putative phosphate ABC transporter%2C periplasmic phosphate-binding protein gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1050 APH_1051 APH_1051 rpsU rpsU 1115117 1115392 + ribosomal protein S21 identified by match to protein family HMM TIGR00030 gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1051 APH_1052 APH_1052 sucC sucC 1115485 1116651 + succinyl-CoA synthetase%2C beta subunit identified by similarity to SP:P80886%3B match to protein family HMM PF00549%3B match to protein family HMM PF02222%3B match to protein family HMM TIGR01016 gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1052 APH_1053 APH_1053 sucD sucD 1116660 1117547 + succinyl-CoA synthetase%2C alpha subunit identified by similarity to SP:P80865%3B match to protein family HMM PF00549%3B match to protein family HMM PF02629%3B match to protein family HMM TIGR01019 gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1053 APH_1054 APH_1054 APH_1054 1118219 1118314 + hypothetical protein identified by Glimmer2%3B putative gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1054 APH_1055 APH_1055 APH_1055 1118368 1118460 + hypothetical protein identified by Glimmer2%3B putative gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1055 APH_1056 APH_1056 APH_1056 1119088 1119897 + putative cell cycle protein MesJ gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1056 APH_1057 APH_1057 APH_1057 1120085 1120213 + hypothetical protein identified by Glimmer2%3B putative gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1057 APH_1058 APH_1058 APH_1058 1120182 1120409 + putative peptidase%2C degenerate Peptides match to this protein was detected in human HL-60 cells by global proteomic analysis. gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1058 APH_1059 APH_1059 alaS alaS 1120378 1123008 - alanyl-tRNA synthetase identified by similarity to SP:P00957%3B match to protein family HMM PF01411%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00344 gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1059 APH_1060 APH_1060 pstC pstC 1123289 1124212 + phosphate ABC transporter%2C permease protein PstC identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR02138 gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1060 APH_1061 APH_1061 APH_1061 1124212 1125024 + glutamine synthetase domain protein identified by similarity to SP:P78061%3B match to protein family HMM PF00120 gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1061 APH_1062 APH_1062 APH_1062 1125036 1125827 - metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1062 APH_1063 APH_1063 p44-38 p44-38 1126398 1127042 + P44-38 outer membrane protein%2C silent silent p44 gene encodes a truncated P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1063 APH_1064 APH_1064 p44-42 p44-42 1127645 1128256 + P44-42 outer membrane protein%2C silent silent p44 gene encodes a truncated P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1064 APH_1065 APH_1065 p44-74 p44-74 1128340 1129122 + P44-74 outer membrane protein%2C silent silent p44 gene encodes a truncated P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1065 APH_1066 APH_1066 APH_1066 1129003 1129488 - hypothetical protein identified by Glimmer2%3B putative gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1066 APH_1067 APH_1067 APH_1067 1129509 1130108 - conserved hypothetical protein identified by similarity to GB:AAS14461.1 gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1067 APH_1068 APH_1068 APH_1068 1130125 1131564 - conserved hypothetical protein identified by similarity to GB:AAS14460.1 gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1068 APH_1069 APH_1069 APH_1069 1131652 1133904 - hypothetical protein identified by Glimmer2%3B putative gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1069 APH_1070 APH_1070 lpdA-3 lpdA-3 1134299 1135714 + dihydrolipoamide dehydrogenase identified by match to protein family HMM PF00070%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01350 gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1070 APH_1071 APH_1071 rho-2 rho-2 1135797 1137128 - transcription termination factor Rho identified by similarity to SP:P52156%3B match to protein family HMM PF00006%3B match to protein family HMM PF07497%3B match to protein family HMM PF07498%3B match to protein family HMM TIGR00767 gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1071 APH_1072 APH_1072 APH_1072 1137423 1137641 - hypothetical protein identified by Glimmer2%3B putative gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1072 APH_1073 APH_1073 hslV hslV 1138045 1138614 + ATP-dependent protease HslV identified by match to protein family HMM PF00227 gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1073 APH_1074 APH_1074 hslU hslU 1138781 1140094 + ATP-dependent Hsl protease%2C ATP-binding subunit HslU identified by match to protein family HMM PF00004%3B match to protein family HMM PF07724%3B match to protein family HMM TIGR00390 gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1074 APH_1075 APH_1075 ubiE ubiE 1140100 1140795 + ubiquinone/menaquinone biosynthesis methyltransferase UbiE identified by similarity to SP:P27851%3B match to protein family HMM PF01209%3B match to protein family HMM TIGR01934 gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1075 APH_1076 APH_1076 p44-C p44-C 1141006 1141236 - P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1076 APH_1077 APH_1077 p44-41 p44-41 1141472 1142305 - P44-41 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1077 APH_1078 APH_1078 p44-56 p44-56 1142337 1142876 - P44-56 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1078 APH_1079 APH_1079 metG metG 1143723 1145264 + methionyl-tRNA synthetase identified by similarity to SP:P23920%3B match to protein family HMM PF00133%3B match to protein family HMM TIGR00398 gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1079 APH_1080 APH_1080 p44-50 p44-50 1146220 1146936 + P44-50 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1080 APH_1081 APH_1081 p44-28 p44-28 1147118 1147942 + P44-28 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus%3B similar to HMM PF01617 gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1081 APH_1082 APH_1082 p44-52 p44-52 1147983 1148549 + P44-52 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1082 APH_1083 APH_1083 APH_1083 1148873 1149040 - hypothetical protein identified by Glimmer2%3B putative gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1083 APH_1084 APH_1084 APH_1084 1149103 1149891 + cytochrome c oxidase%2C subunit II identified by similarity to SP:Q03736%3B match to protein family HMM PF00116%3B match to protein family HMM PF02790 gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1084 APH_1085 APH_1085 ctaD ctaD 1149954 1151510 + cytochrome c oxidase%2C subunit I identified by similarity to SP:P31833%3B match to protein family HMM PF00115 gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1085 APH_1086 APH_1086 cyoE cyoE 1151523 1152413 + protoheme IX farnesyltransferase identified by match to protein family HMM PF01040%3B match to protein family HMM TIGR01473 gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1086 APH_1087 APH_1087 APH_1087 1152453 1153154 - putative competence lipoprotein ComL identified by similarity to SP:Q50985 gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1087 APH_1088 APH_1088 purD purD 1153328 1154584 + phosphoribosylamine--glycine ligase identified by similarity to SP:P12039%3B match to protein family HMM PF01071%3B match to protein family HMM PF02842%3B match to protein family HMM PF02843%3B match to protein family HMM PF02844%3B match to protein family HMM TIGR00877 gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1088 APH_1089 APH_1089 APH_1089 1154682 1154789 + hypothetical protein identified by Glimmer2%3B putative gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1089 APH_1090 APH_1090 yajC yajC 1154824 1155198 + preprotein translocase%2C YajC subunit identified by similarity to SP:P19677%3B match to protein family HMM PF02699%3B match to protein family HMM TIGR00739 gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1090 APH_1091 APH_1091 APH_1091 1155501 1155596 + hypothetical protein identified by Glimmer2%3B putative gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1091 APH_1092 APH_1092 APH_1092 1155650 1155742 + hypothetical protein identified by Glimmer2%3B putative gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1092 APH_1093 APH_1093 APH_1093 1156370 1157179 + putative cell cycle protein MesJ gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1093 APH_1094 APH_1094 APH_1094 1157367 1157495 + hypothetical protein identified by Glimmer2%3B putative gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1094 APH_1095 APH_1095 APH_1095 1157464 1157691 + peptidase domain protein gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1095 APH_1096 APH_1096 APH_1096 1157660 1157944 - alanyl-tRNA synthetase domain protein gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1096 APH_1097 APH_1097 dnaN dnaN 1158212 1159339 - DNA polymerase III%2C beta subunit identified by similarity to SP:P00583%3B match to protein family HMM PF00712%3B match to protein family HMM PF02767%3B match to protein family HMM PF02768%3B match to protein family HMM TIGR00663 gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1097 APH_1098 APH_1098 APH_1098 1159453 1160067 - 3''-5'' exonuclease family protein identified by similarity to SP:O67779%3B match to protein family HMM PF01612 gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1098 APH_1099 APH_1099 ctrA ctrA 1160135 1160965 - DNA-binding response regulator CtrA Name change according to the cited literature. PMID: 16882029 gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1099 APH_1100 APH_1100 APH_1100 1161269 1161907 - DNA-binding protein identified by match to protein family HMM PF01381 gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1100 APH_1101 APH_1101 ppa ppa 1162500 1163036 - inorganic pyrophosphatase identified by similarity to SP:O34955%3B match to protein family HMM PF00719 gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1101 APH_1102 APH_1102 APH_1102 1163864 1164019 - hypothetical protein identified by Glimmer2%3B putative gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1102 APH_1103 APH_1103 APH_1103 1164021 1164377 - hypothetical protein identified by Glimmer2%3B putative gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1103 APH_1104 APH_1104 APH_1104 1164416 1164520 + hypothetical protein identified by Glimmer2%3B putative gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1104 APH_1105 APH_1105 APH_1105 1165277 1165375 + hypothetical protein identified by Glimmer2%3B putative gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1105 APH_1106 APH_1106 APH_1106 1165842 1165955 - hypothetical protein identified by Glimmer2%3B putative gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1106 APH_1107 APH_1107 rpsI rpsI 1165960 1166409 - ribosomal protein S9 identified by match to protein family HMM PF00380 gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1107 APH_1108 APH_1108 rplM rplM 1166396 1166872 - ribosomal protein L13 identified by similarity to SP:P02410%3B match to protein family HMM PF00572%3B match to protein family HMM TIGR01066 gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1108 APH_1109 APH_1109 APH_1109 1166971 1167066 + hypothetical protein identified by Glimmer2%3B putative gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1109 APH_1110 APH_1110 APH_1110 1167063 1168337 + outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1110 APH_1111 APH_1111 APH_1111 1170067 1171095 - ATP-binding protein%2C Mrp/Nbp35 family identified by similarity to SP:P21590 gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1111 APH_1112 APH_1112 prsA prsA 1171211 1172179 + ribose-phosphate pyrophosphokinase identified by similarity to SP:P08330%3B match to protein family HMM PF00156%3B match to protein family HMM TIGR01251 gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1112 APH_1113 APH_1113 gatC gatC 1172176 1172496 + glutamyl-tRNA(Gln) amidotransferase%2C C subunit identified by match to protein family HMM PF02686%3B match to protein family HMM TIGR00135 gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1113 APH_1114 APH_1114 p44-7 p44-7 1173721 1174788 + P44-7 outer membrane protein encodes a full-length P44 outer membrane protein gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1114 APH_1115 APH_1115 p44-C p44-C 1174886 1175182 + P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1115 APH_1116 APH_1116 APH_1116 1175364 1175540 - hypothetical protein identified by Glimmer2%3B putative gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1116 APH_1117 APH_1117 acnA acnA 1176981 1179602 - aconitate hydratase 1 identified by similarity to SP:P25516%3B match to protein family HMM PF00330%3B match to protein family HMM PF00694%3B match to protein family HMM TIGR01341 gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1117 APH_1118 APH_1118 p44-7b p44-7b 1180031 1180981 - P44-7b outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus%3B similar to HMM PF01617 gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1118 APH_1119 APH_1119 purK purK 1181775 1182851 - phosphoribosylaminoimidazole carboxylase%2C ATPase subunit identified by similarity to SP:P12045%3B match to protein family HMM PF02222%3B match to protein family HMM TIGR01161 gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1119 APH_1120 APH_1120 apaG apaG 1182984 1183391 + apaG protein identified by similarity to SP:P05636%3B match to protein family HMM PF04379 gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1120 APH_1121 APH_1121 p44-6 p44-6 1183626 1184210 + P44-6 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1121 APH_1122 APH_1122 p44-75 p44-75 1184279 1184875 + similar to P44-75 outer membrane protein%2C silent%3B expression not detected in HL-60 cells gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1122 APH_1123 APH_1123 p44-3 p44-3 1185019 1185636 + P44-3 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1123 APH_1124 APH_1124 p44-C p44-C 1185766 1185936 + similar to P44 outer membrane protein%2C C-terminal fragment%3B expression not detected in HL-60 cells gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1124 APH_1125 APH_1125 p44-C p44-C 1186140 1186427 + P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus. gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1125 APH_1126 APH_1126 APH_1126 1186772 1187038 + hypothetical protein identified by Glimmer2%3B putative gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1126 APH_1127 APH_1127 APH_1127 1187239 1190592 - hypothetical protein identified by Glimmer2%3B putative gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1127 APH_1128 APH_1128 p44-76 p44-76 1190950 1191462 - P44-76 outer membrane protein%2C silent silent p44 gene encodes a truncated P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1128 APH_1129 APH_1129 virB4-2 virB4-2 1191845 1194178 - type IV secretion system protein VirB4-2 Name change from VirB4-1 to VirB4-2. PMID: 20670295 gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1129 APH_1130 APH_1130 virB2-8 virB2-8 1194386 1194757 - Type IV secretion protein VirB2 homolog VirB2-8 Assigned to VirB2 homolog based on COG3838. PMID: 19661282 gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1130 APH_1131 APH_1131 virB2-7 virB2-7 1195097 1195456 - Type IV secretion protein VirB2 homolog VirB2-7 Assigned to VirB2 homolog based on fam_24 (or COG3838). PMID: 19661282 gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1131 APH_1132 APH_1132 virB2-6 virB2-6 1195476 1195850 - Type IV secretion protein VirB2 homolog VirB2-6 Assigned to VirB2 homolog based on fam_24 (or COG3838). PMID: 19661282 gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1132 APH_1133 APH_1133 virB2-5 virB2-5 1196716 1197075 - Type IV secretion protein VirB2 homolog VirB2-5 Assigned to VirB2 homolog based on COG3838. PMID: 19661282 gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1133 APH_1134 APH_1134 virB2-4 virB2-4 1197935 1198297 - Type IV secretion protein VirB2 homolog VirB2-4 Assigned to VirB2 homolog based on fam_24 (or COG3838). PMID: 19661282 gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1134 APH_1135 APH_1135 APH_1135 1198948 1199055 + hypothetical protein identified by Glimmer2%3B putative gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1135 APH_1136 APH_1136 virB2-3 virB2-3 1199459 1199893 - Type IV secretion protein VirB2 homolog VirB2-3 Assigned to VirB2 homolog based on COG3838. PMID: 19661282 gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1136 APH_1137 APH_1137 APH_1137 1200025 1200336 - hypothetical protein identified by Glimmer2%3B putative gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1137 APH_1138 APH_1138 APH_1138 1200333 1200467 - hypothetical protein identified by Glimmer2%3B putative gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1138 APH_1139 APH_1139 APH_1139 1201559 1201678 - hypothetical protein identified by Glimmer2%3B putative gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1139 APH_1140 APH_1140 APH_1140 1201811 1201993 - hypothetical protein identified by Glimmer2%3B putative gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1140 APH_1141 APH_1141 APH_1141 1201962 1202060 - hypothetical protein identified by Glimmer2%3B putative gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1141 APH_1142 APH_1142 APH_1142 1202220 1202339 - hypothetical protein identified by Glimmer2%3B putative gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1142 APH_1143 APH_1143 APH_1143 1202464 1202592 - hypothetical protein identified by Glimmer2%3B putative gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1143 APH_1144 APH_1144 virB2-2 virB2-2 1202673 1203044 - Type IV secretion protein VirB2 homolog VirB2-2 Assigned to VirB2 homolog based on COG3838. PMID: 19661282 gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1144 APH_1145 APH_1145 virB2-1 virB2-1 1203100 1203486 - Type IV secretion protein VirB2 homolog VirB2-1 Assigned to VirB2 homolog based on COG3838. PMID: 19661282 gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1145 APH_1146 APH_1146 hflK hflK 1204211 1205317 + HflK protein identified by similarity to SP:P25662%3B match to protein family HMM PF01145%3B match to protein family HMM TIGR01933 gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1146 APH_1147 APH_1147 hflC hflC 1205314 1206189 + HflC protein identified by match to protein family HMM PF01145%3B match to protein family HMM TIGR01932 gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1147 APH_1148 APH_1148 APH_1148 1206192 1207664 + protease DO family protein identified by match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02037 gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1148 APH_1149 APH_1149 rnc rnc 1208958 1209668 + ribonuclease III identified by similarity to SP:P05797%3B match to protein family HMM PF00035%3B match to protein family HMM PF00636%3B match to protein family HMM TIGR02191 gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1149 APH_1150 APH_1150 ctaG ctaG 1209710 1210261 + cytochrome c oxidase assembly protein CtaG identified by similarity to SP:P56940%3B match to protein family HMM PF04442 gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1150 APH_1151 APH_1151 APH_1151 1210283 1210876 - hypothetical protein identified by Glimmer2%3B putative gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1151 APH_1152 APH_1152 p44-47 p44-47 1212108 1212983 - P44-47 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1152 APH_1153 APH_1153 APH_1153 1213276 1218699 - hypothetical protein identified by Glimmer2%3B putative gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1153 APH_1154 APH_1154 p44-4 p44-4 1218976 1219503 - P44-4 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1154 APH_1155 APH_1155 p44-53 p44-53 1219544 1220803 - P44-53 outer membrane protein full-length P44 outer membrane protein gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1155 APH_1156 APH_1156 APH_1156 1221577 1221708 - hypothetical protein identified by Glimmer2%3B putative gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1156 APH_1157 APH_1157 APH_1157 1221815 1222693 - hypothetical protein identified by Glimmer2%3B putative gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1157 APH_1158 APH_1158 APH_1158 1222839 1224230 - peptidase%2C M16 family identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1158 APH_1159 APH_1159 APH_1159 1224232 1225773 - peptidase%2C M16 family identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1159 APH_1160 APH_1160 lspA lspA 1225809 1226279 - signal peptidase II identified by match to protein family HMM PF01252%3B match to protein family HMM TIGR00077 gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1160 APH_1161 APH_1161 ribF ribF 1226373 1227329 - riboflavin biosynthesis protein RibF identified by similarity to SP:P54575%3B match to protein family HMM PF01687%3B match to protein family HMM PF06574%3B match to protein family HMM TIGR00083 gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1161 APH_1162 APH_1162 grxC grxC 1227356 1227598 + glutaredoxin 3 identified by similarity to SP:P37687%3B match to protein family HMM PF00462%3B match to protein family HMM TIGR02181 gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1162 APH_1163 APH_1163 p44-53b p44-53b 1227652 1228671 + P44-53b outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus%3B similar to HMM PF01617 gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1163 APH_1164 APH_1164 ftsA-1 ftsA-1 1228892 1230076 - cell division protein FtsA identified by similarity to SP:P06137%3B match to protein family HMM PF02491%3B match to protein family HMM TIGR01174 gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1164 APH_1165 APH_1165 recJ recJ 1230202 1231959 - single-stranded-DNA-specific exonuclease RecJ identified by similarity to SP:P21893%3B match to protein family HMM PF01368%3B match to protein family HMM PF02272%3B match to protein family HMM TIGR00644 gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1165 APH_1166 APH_1166 APH_1166 1232135 1233568 - dehydrogenase%2C isocitrate/isopropylmalate family identified by match to protein family HMM PF00180 gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1166 APH_1167 APH_1167 APH_1167 1233846 1234484 - hypothetical protein identified by Glimmer2%3B putative gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1167 APH_1168 APH_1168 p44-36 p44-36 1235432 1236532 - P44-36 outer membrane protein encodes a full-length P44 outer membrane protein gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1168 APH_1169 APH_1169 p44-19 p44-19 1236593 1237543 - P44-19 outer membrane protein%2C silent encodes a full-length P44 outer membrane protein gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1169 APH_1170 APH_1170 APH_1170 1237808 1239502 - pentapeptide repeat family protein identified by match to protein family HMM PF00805 gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1170 APH_1171 APH_1171 APH_1171 1239986 1240663 + conserved hypothetical protein identified by similarity to GB:AAS14894.1 gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1171 APH_1172 APH_1172 p44-C p44-C 1240584 1240820 - P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1172 APH_1173 APH_1173 pyrE pyrE 1242299 1242913 + orotate phosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01367 gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1173 APH_1174 APH_1174 thiF thiF 1242991 1243779 + adenylyltransferase thiF identified by similarity to SP:P30138%3B match to protein family HMM PF00899%3B match to protein family HMM PF05237 gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1174 APH_1175 APH_1175 APH_1175 1244086 1244199 + glutaredoxin 3%2C truncated identified by similarity to SP:P37687 gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1175 APH_1176 APH_1176 p44-2 p44-2 1244325 1245404 + P44-2 outer membrane protein encodes a full-length P44 outer membrane protein gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1176 APH_1177 APH_1177 p44-54 p44-54 1245702 1246394 + P44-54 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1177 APH_1178 APH_1178 secA secA 1246804 1249425 - preprotein translocase%2C SecA subunit identified by similarity to SP:P10408%3B match to protein family HMM PF01043%3B match to protein family HMM PF02810%3B match to protein family HMM PF07516%3B match to protein family HMM PF07517%3B match to protein family HMM TIGR00963 gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1178 APH_1179 APH_1179 ftsH ftsH 1249599 1251434 - ATP-dependent metalloprotease FtsH identified by similarity to GB:CAB51029.1%3B match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM TIGR01241 gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1179 APH_1180 APH_1180 tilS tilS 1251447 1252790 - tRNA(Ile)-lysidine synthetase identified by match to protein family HMM PF01171%3B match to protein family HMM TIGR02432 gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1180 APH_1181 APH_1181 APH_1181 1252836 1252920 - tRNA-Ser tRNA gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1181 APH_1182 APH_1182 APH_1182 1253123 1254583 + potassium uptake protein%2C TrkH family identified by similarity to GB:BAA31229.1%3B match to protein family HMM PF02386%3B match to protein family HMM PF07723 gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1182 APH_1183 APH_1183 ftsA-2 ftsA-2 1254695 1255915 + cell division protein FtsA identified by similarity to SP:P06137%3B match to protein family HMM PF02491%3B match to protein family HMM TIGR01174 gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1183 APH_1184 APH_1184 p44-8b p44-8b 1256136 1256681 - P44-8b outer membrane protein p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1184 APH_1185 APH_1185 p44-C p44-C 1256713 1256883 - P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1185 APH_1186 APH_1186 p44-40 p44-40 1256991 1257773 - P44-40 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1186 APH_1187 APH_1187 APH_1187 1258529 1258651 + hypothetical protein identified by Glimmer2%3B putative gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1187 APH_1188 APH_1188 APH_1188 1258716 1258841 - hypothetical protein identified by Glimmer2%3B putative gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1188 APH_1189 APH_1189 APH_1189 1259495 1259986 - putative ATP synthase F0%2C B subunit gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1189 APH_1190 APH_1190 APH_1190 1259983 1260486 - putative ATP synthase F0%2C B' subunit gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1190 APH_1191 APH_1191 atpE atpE 1260493 1260717 - ATP synthase F0%2C C chain identified by match to protein family HMM PF00137 gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1191 APH_1192 APH_1192 atpB atpB 1260922 1261650 - ATP synthase F0%2C A subunit identified by similarity to SP:P15012%3B match to protein family HMM PF00119%3B match to protein family HMM TIGR01131 gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1192 APH_1193 APH_1193 APH_1193 1261898 1263151 + AraM domain protein identified by similarity to SP:P94527%3B match to protein family HMM PF01761 gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1193 APH_1194 APH_1194 p44-18 p44-18 1263405 1264163 - P44-18 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1194 APH_1195 APH_1195 p44-1 p44-1 1264142 1265383 - P44-1 outer membrane protein encodes a full-length P44 outer membrane protein gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1195 APH_1196 APH_1196 APH_1196 1265295 1265417 + hypothetical protein identified by Glimmer2%3B putative gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1196 APH_1197 APH_1197 APH_1197 1265615 1266127 + hexapeptide transferase family protein gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1197 APH_1198 APH_1198 sucB sucB 1266220 1267440 + 2-oxoglutarate dehydrogenase%2C E2 component%2C dihydrolipoamide succinyltransferase identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM TIGR01347 gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1198 APH_1199 APH_1199 map map 1267450 1268244 + methionine aminopeptidase%2C type I identified by similarity to SP:P07906%3B match to protein family HMM PF00557%3B match to protein family HMM TIGR00500 gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1199 APH_1200 APH_1200 APH_1200 1268369 1269217 + modification methylase%2C HemK family identified by similarity to SP:P37186%3B match to protein family HMM TIGR00536 gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1200 APH_1201 APH_1201 APH_1201 1269398 1269499 - hypothetical protein identified by Glimmer2%3B putative gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1201 APH_1202 APH_1202 p44-77 p44-77 1269487 1270185 - P44-77 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1202 APH_1203 APH_1203 p44-34b p44-34b 1270244 1270846 - P44-34b outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1203 APH_1204 APH_1204 APH_1204 1271005 1271373 + cytochrome c-type biogenesis protein%2C truncated identified by similarity to SP:P45403 gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1204 APH_1205 APH_1205 APH_1205 1271757 1273019 - putative cytochrome c oxidase%2C subunit I gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1205 APH_1206 APH_1206 pgsA pgsA 1273604 1274149 + CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase identified by similarity to SP:P06978%3B match to protein family HMM PF01066%3B match to protein family HMM TIGR00560 gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1206 APH_1207 APH_1207 purH purH 1274876 1276408 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase identified by similarity to SP:P12048%3B match to protein family HMM PF01808%3B match to protein family HMM PF02142%3B match to protein family HMM TIGR00355 gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1207 APH_1208 APH_1208 fabZ fabZ 1276426 1276863 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ identified by match to protein family HMM PF07977%3B match to protein family HMM TIGR01750 gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1208 APH_1209 APH_1209 APH_1209 1276880 1277437 - conserved hypothetical protein identified by similarity to GB:AAS14739.1 gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1209 APH_1210 APH_1210 APH_1210 1277440 1279758 - outer membrane protein%2C OMP85 family identified by match to protein family HMM PF01103%3B match to protein family HMM PF07244 gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1210 APH_1211 APH_1211 APH_1211 1279764 1280852 - putative membrane-associated zinc metalloprotease identified by match to protein family HMM PF00595%3B match to protein family HMM PF02163%3B match to protein family HMM TIGR00054 gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1211 APH_1212 APH_1212 APH_1212 1280971 1281237 + TPR repeat protein identified by match to protein family HMM PF03937 gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1212 APH_1213 APH_1213 APH_1213 1281281 1282489 + thiol:disulfide interchange protein%2C truncated identified by similarity to GB:AAM35423.1 gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1213 APH_1214 APH_1214 APH_1214 1282486 1283646 - D-alanyl-D-alanine carboxypeptidase family protein identified by match to protein family HMM PF00768%3B match to protein family HMM PF07943 gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1214 APH_1215 APH_1215 p44-14 p44-14 1283955 1285256 - P44-14 outer membrane protein encodes a full-length P44 outer membrane protein gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1215 APH_1216 APH_1216 APH_1216 1285381 1286610 + polyA polymerase/tRNA nucleotidyltransferase family protein identified by similarity to SP:P42977%3B match to protein family HMM PF01743 gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1216 APH_1217 APH_1217 ndk ndk 1286645 1287067 - nucleoside diphosphate kinase identified by similarity to SP:Q59636%3B match to protein family HMM PF00334 gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1217 APH_1218 APH_1218 APH_1218 1287298 1287849 + DNA-binding protein identified by similarity to GB:AAN15209.1%3B match to protein family HMM PF01381 gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1218 APH_1219 APH_1219 omp-1X omp-1X 1288189 1289109 + Omp-1X identified by similarity to GB:AAN15210.1%3B match to protein family HMM PF01617 gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1219 APH_1220 APH_1220 omp-1N omp-1N 1289345 1290169 + Omp-1N identified by similarity to GB:AAN15211.1 gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1220 APH_1221 APH_1221 p44-18ES p44-18ES 1290383 1291678 + P44-18ES%2C P44 outer membrane protein expression locus with P44-18 encodes a full-length P44 outer membrane protein gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1221 APH_1222 APH_1222 APH_1222 1291821 1291964 + hypothetical protein identified by Glimmer2%3B putative gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1222 APH_1223 APH_1223 APH_1223 1291980 1292234 + recA protein%2C truncated identified by similarity to SP:Q04761 gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1223 APH_1224 APH_1224 valS valS 1292221 1294641 - valyl-tRNA synthetase identified by similarity to SP:Q58413%3B match to protein family HMM PF00133%3B match to protein family HMM TIGR00422 gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1224 APH_1225 APH_1225 APH_1225 1294960 1295256 - hypothetical protein identified by Glimmer2%3B putative gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1225 APH_1226 APH_1226 p44-15 p44-15 1295425 1296216 - P44-15 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1226 APH_1227 APH_1227 ftsY ftsY 1296673 1297590 - signal recognition particle-docking protein FtsY identified by match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM TIGR00064 gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1227 APH_1228 APH_1228 bioD bioD 1297664 1298341 + dethiobiotin synthetase identified by similarity to SP:P53558%3B match to protein family HMM TIGR00347 gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1228 APH_1229 APH_1229 p44-2b p44-2b 1299025 1300302 + P44-2b outer membrane protein encodes a full-length P44 outer membrane protein gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1229 APH_1230 APH_1230 p44-C p44-C 1300408 1300659 + P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1230 APH_1231 APH_1231 gshA gshA 1300687 1301913 - glutamate--cysteine ligase identified by similarity to GB:AAB41630.1%3B match to protein family HMM TIGR02049 gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1231 APH_1232 APH_1232 gltA gltA 1302342 1303577 - citrate synthase I identified by similarity to SP:P20901%3B match to protein family HMM PF00285%3B match to protein family HMM TIGR01798 gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1232 APH_1233 APH_1233 guaA guaA 1303611 1305200 - GMP synthase identified by match to protein family HMM PF00117%3B match to protein family HMM PF00958%3B match to protein family HMM TIGR00884%3B match to protein family HMM TIGR00888 gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1233 APH_1234 APH_1234 APH_1234 1305254 1305361 + hypothetical protein identified by Glimmer2%3B putative gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1234 APH_1235 APH_1235 APH_1235 1305650 1306054 + hypothetical protein identified by Glimmer2%3B putative gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1235 APH_1236 APH_1236 APH_1236 1305985 1306128 + hypothetical protein identified by Glimmer2%3B putative gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1236 APH_1237 APH_1237 APH_1237 1306093 1306227 - hypothetical protein identified by Glimmer2%3B putative gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1237 APH_1238 APH_1238 p44-13 p44-13 1306904 1308022 + P44-13 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1238 APH_1239 APH_1239 p44-15b p44-15b 1308083 1309177 + P44-15b outer membrane protein encodes a full-length P44 outer membrane protein gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1239 APH_1240 APH_1240 msp4 msp4 1309865 1310713 - major surface protein 4 identified by similarity to SP:Q07408%3B match to protein family HMM PF01617 gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1240 APH_1241 APH_1241 p44-33 p44-33 1311507 1312187 - P44-33 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1241 APH_1242 APH_1242 p44-49 p44-49 1312382 1313377 - P44-49 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus%3B similar to HMM PF01617 gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1242 APH_1243 APH_1243 hemA hemA 1313674 1314918 - 5-aminolevulinic acid synthase identified by similarity to GB:BAA35068.1%3B match to protein family HMM PF00155%3B match to protein family HMM TIGR01821 gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1243 APH_1244 APH_1244 tyrS tyrS 1315208 1316446 - tyrosyl-tRNA synthetase identified by similarity to SP:P00951%3B match to protein family HMM PF00579%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00234 gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1244 APH_1245 APH_1245 APH_1245 1316486 1316557 - tRNA-Lys tRNA gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1245 APH_1246 APH_1246 glnA glnA 1316738 1318156 + glutamine synthetase%2C type I identified by similarity to SP:P05457%3B match to protein family HMM PF00120%3B match to protein family HMM PF03951%3B match to protein family HMM TIGR00653 gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1246 APH_1247 APH_1247 ispB ispB 1318413 1319363 + octaprenyl-diphosphate synthase identified by similarity to SP:P19641%3B match to protein family HMM PF00348 gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1247 APH_1248 APH_1248 p44-27 p44-27 1320106 1320867 - P44-27 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1248 APH_1249 APH_1249 p44-12 p44-12 1320893 1322068 - P44-12 outer membrane protein gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1249 APH_1250 APH_1250 APH_1250 1322615 1322779 - major surface protein hypervariable region%2C truncated Peptides match to this protein was detected in human HL-60 cells by global proteomic analysis. gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1250 APH_1251 APH_1251 APH_1251 1322781 1322951 - hypothetical protein identified by Glimmer2%3B putative gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1251 APH_1252 APH_1252 holA holA 1323024 1324040 + DNA polymerase III%2C delta subunit identified by similarity to GB:AAS14093.1%3B match to protein family HMM PF06144 gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1252 APH_1253 APH_1253 p44-39 p44-39 1324169 1324972 + P44-39 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1253 APH_1254 APH_1254 APH_1254 1325082 1325204 + hypothetical protein identified by Glimmer2%3B putative gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1254 APH_1255 APH_1255 p44-10 p44-10 1325391 1326197 + P44-10 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion%3B similar to protein family HMM PF01617 gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1255 APH_1256 APH_1256 p44-23 p44-23 1326258 1327445 + P44-23 outer membrane protein encodes a full-length P44 outer membrane protein gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1256 APH_1257 APH_1257 APH_1257 1327644 1328906 + putative pyruvate dehydrogenase complex%2C E2 component%2C dihydrolipoamide acetyltransferase identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817 gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1257 APH_1258 APH_1258 fba fba 1329099 1330019 + fructose-bisphosphate aldolase%2C class I identified by similarity to SP:P71295%3B match to protein family HMM PF01791 gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1258 APH_1259 APH_1259 APH_1259 1330024 1330095 + tRNA-Cys tRNA gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1259 APH_1260 APH_1260 APH_1260 1330221 1330319 + hypothetical protein identified by Glimmer2%3B putative gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1260 APH_1261 APH_1261 p44-46 p44-46 1330459 1331034 + P44-46 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1261 APH_1262 APH_1262 APH_1262 1331826 1331957 - hypothetical protein identified by Glimmer2%3B putative gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1262 APH_1263 APH_1263 infC infC 1332034 1332552 - translation initiation factor IF-3 identified by match to protein family HMM PF00707%3B match to protein family HMM PF05198%3B match to protein family HMM TIGR00168 gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1263 APH_1264 APH_1264 thrS thrS 1332575 1334422 - threonyl-tRNA synthetase identified by similarity to SP:P00955%3B match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00418 gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1264 APH_1265 APH_1265 APH_1265 1334562 1335077 + competence/damage-inducible protein CinA C-terminal domain protein identified by match to protein family HMM PF02464%3B match to protein family HMM TIGR00199 gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1265 APH_1266 APH_1266 rplS rplS 1335095 1335481 - ribosomal protein L19 identified by similarity to SP:P02420%3B match to protein family HMM PF01245%3B match to protein family HMM TIGR01024 gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1266 APH_1267 APH_1267 trmD trmD 1335485 1336183 - tRNA (guanine-N1)-methyltransferase identified by match to protein family HMM PF01746%3B match to protein family HMM TIGR00088 gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1267 APH_1268 APH_1268 rimM rimM 1336180 1336695 - 16S rRNA processing protein RimM identified by similarity to SP:P21504%3B match to protein family HMM PF01782%3B match to protein family HMM TIGR02273 gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1268 APH_1269 APH_1269 p44-16 p44-16 1336817 1338106 - P44-16 outer membrane protein encodes a full-length P44 outer membrane protein gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1269 APH_1270 APH_1270 APH_1270 1338194 1339021 - aminomethyl transferase family protein identified by match to protein family HMM PF01571 gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1270 APH_1271 APH_1271 APH_1271 1339102 1341015 - cytochrome c-type biogenesis protein%2C CcmF/CycK/CcsA family identified by similarity to SP:P45403%3B match to protein family HMM PF01578 gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1271 APH_1272 APH_1272 p44-48 p44-48 1341386 1342318 + P44-48 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1272 APH_1273 APH_1273 p44-C p44-C 1342590 1342694 + P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus. gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1273 APH_1274 APH_1274 p44-25 p44-25 1342744 1343661 + P44-25 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locusn%3B similar to HMM PF01617 gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1274 APH_1275 APH_1275 p44-16b p44-16b 1343722 1345008 + P44-16b outer membrane protein p44 gene encodes a full-length P44 outer membrane protein gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1275 APH_1276 APH_1276 ispF ispF 1345210 1345683 - 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase identified by similarity to SP:P36663%3B match to protein family HMM PF02542%3B match to protein family HMM TIGR00151 gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1276 APH_1277 APH_1277 ispD ispD 1345938 1346645 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase identified by match to protein family HMM PF01128 gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1277 APH_1278 APH_1278 APH_1278 1347045 1348874 + hypothetical protein identified by Glimmer2%3B putative gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1278 APH_1279 APH_1279 purE purE 1349214 1349711 - phosphoribosylaminoimidazole carboxylase%2C catalytic subunit identified by similarity to SP:P09028%3B match to protein family HMM PF00731%3B match to protein family HMM TIGR01162 gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1279 APH_1280 APH_1280 APH_1280 1349704 1350252 - hypothetical protein identified by Glimmer2%3B putative gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1280 APH_1281 APH_1281 ihfA ihfA 1350590 1350910 + integration host factor%2C alpha subunit identified by similarity to SP:P06984%3B match to protein family HMM PF00216 gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1281 APH_1282 APH_1282 APH_1282 1350907 1351284 + transcriptional regulator%2C MerR family identified by match to protein family HMM PF00376 gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1282 APH_1283 APH_1283 APH_1283 1351275 1351352 + tRNA-Pro tRNA gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1283 APH_1284 APH_1284 p44-C p44-C 1351934 1352113 - P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1284 APH_1285 APH_1285 ychF ychF 1352303 1353394 + GTP-binding protein YchF identified by match to protein family HMM PF01926%3B match to protein family HMM PF06071%3B match to protein family HMM TIGR00092 gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1285 APH_1286 APH_1286 APH_1286 1354039 1354188 - hypothetical protein identified by Glimmer2%3B putative gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1286 APH_1287 APH_1287 p44-32 p44-32 1354240 1355508 + P44-32 outer membrane protein encodes a full-length P44 outer membrane protein gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1287 APH_1288 APH_1288 trmE trmE 1355710 1357047 + tRNA modification GTPase TrmE identified by similarity to SP:P25522%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00450%3B match to protein family HMM TIGR00650 gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1288 APH_1289 APH_1289 APH_1289 1357402 1357660 - ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:Q9ZCV3 pseudogene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1289 APH_1290 APH_1290 APH_1290 1358378 1358842 - conserved hypothetical protein TIGR00043 identified by similarity to GB:AAS14418.1%3B match to protein family HMM PF02130%3B match to protein family HMM TIGR00043 gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1290 APH_1291 APH_1291 APH_1291 1358849 1359256 - conserved hypothetical protein identified by similarity to GB:AAS14416.1%3B match to protein family HMM PF04543 gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1291 APH_1292 APH_1292 ftsZ ftsZ 1359256 1360458 - cell division protein FtsZ identified by similarity to GB:AAK00615.2%3B match to protein family HMM PF00091%3B match to protein family HMM PF03953%3B match to protein family HMM TIGR00065 gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1292 APH_1293 APH_1293 APH_1293 1360724 1361059 + hypothetical protein identified by Glimmer2%3B putative gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1293 APH_1294 APH_1294 APH_1294 1361204 1361434 - conserved domain protein gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1294 APH_1295 APH_1295 APH_1295 1361817 1362116 - conserved domain protein gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1295 APH_1296 APH_1296 APH_1296 1362919 1363050 - hypothetical protein identified by Glimmer2%3B putative gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1296 APH_1297 APH_1297 APH_1297 1363367 1363900 - flavoprotein identified by match to protein family HMM PF02441 gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1297 APH_1298 APH_1298 recG recG 1363910 1366018 + ATP-dependent DNA helicase RecG identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1298 APH_1299 APH_1299 APH_1299 1366192 1367133 + NADH-ubiquinone oxidoreductase family protein identified by similarity to SP:P34943%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF05368%3B match to protein family HMM PF07993 gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1299 APH_1300 APH_1300 purF purF 1367224 1368630 - amidophosphoribosyltransferase identified by similarity to SP:P00497%3B match to protein family HMM PF00156%3B match to protein family HMM PF00310%3B match to protein family HMM TIGR01134 gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1300 APH_1301 APH_1301 pth pth 1368973 1369524 - peptidyl-tRNA hydrolase identified by match to protein family HMM PF01195%3B match to protein family HMM TIGR00447 gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1301 APH_1302 APH_1302 APH_1302 1369534 1370169 - ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 identified by match to protein family HMM PF01386%3B match to protein family HMM TIGR00731 gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1302 APH_1303 APH_1303 APH_1303 1370562 1371215 - comF family protein gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1303 APH_1304 APH_1304 APH_1304 1371238 1371348 - hypothetical protein identified by Glimmer2%3B putative gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1304 APH_1305 APH_1305 APH_1305 1371452 1373167 - glutathione-regulated potassium-efflux system protein identified by similarity to SP:P45522%3B match to protein family HMM PF00999%3B match to protein family HMM PF02254 gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1305 APH_1306 APH_1306 APH_1306 1373179 1373751 - conserved hypothetical protein identified by similarity to GB:AAS14896.1 gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1306 APH_1307 APH_1307 APH_1307 1374152 1374595 - conserved hypothetical protein identified by similarity to GB:AAS14141.1%3B match to protein family HMM PF03653 gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1307 APH_1308 APH_1308 APH_1308 1374981 1375979 - putative pyruvate dehydrogenase complex%2C E1 component%2C beta subunit identified by similarity to SP:Q9R9N4%3B match to protein family HMM PF02779%3B match to protein family HMM PF02780 gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1308 APH_1309 APH_1309 APH_1309 1376470 1376553 - tRNA-Leu tRNA gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1309 APH_1310 APH_1310 tldD tldD 1376648 1378069 + TldD protein identified by similarity to SP:P46473%3B match to protein family HMM PF01523 gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1310 APH_1311 APH_1311 p44-24 p44-24 1378339 1379532 - P44-24 outer membrane protein encodes a full-length P44 outer membrane protein gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1311 APH_1312 APH_1312 p44-5 p44-5 1379593 1380468 - P44-5 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus%3B similar to HMM PF01617 gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1312 APH_1313 APH_1313 p44-26 p44-26 1380550 1381371 - P44-26 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1313 APH_1314 APH_1314 ribA ribA 1381745 1382836 - GTP cyclohydrolase II identified by similarity to SP:P43525%3B match to protein family HMM PF00925 gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1314 APH_1315 APH_1315 APH_1315 1382853 1382940 - tRNA-Leu tRNA gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1315 APH_1316 APH_1316 APH_1316 1383048 1384076 - TPR domain protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1316 APH_1317 APH_1317 APH_1317 1384151 1384618 - hypothetical protein identified by Glimmer2%3B putative gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1317 APH_1318 APH_1318 APH_1318 1384596 1384733 - hypothetical protein identified by Glimmer2%3B putative gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1318 APH_1319 APH_1319 APH_1319 1385485 1386429 + GTP cyclohydrolase II%2C degenerate Peptides match to this protein was detected in human HL-60 cells by global proteomic analysis. gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1319 APH_1320 APH_1320 APH_1320 1386913 1387338 - conserved hypothetical protein identified by similarity to GB:AAS14454.1 gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1320 APH_1321 APH_1321 pgk pgk 1387822 1388976 + phosphoglycerate kinase identified by similarity to SP:P09404%3B match to protein family HMM PF00162 gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1321 APH_1322 APH_1322 xseA xseA 1389045 1390241 - exodeoxyribonuclease VII%2C large subunit identified by match to protein family HMM PF01336%3B match to protein family HMM PF02601%3B match to protein family HMM TIGR00237 gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1322 APH_1323 APH_1323 APH_1323 1390210 1390827 - zinc finger-like domain protein identified by match to protein family HMM TIGR02098 gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1323 APH_1324 APH_1324 p44-N p44-N 1391128 1391346 + P44 outer membrane protein%2C N-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1324 APH_1325 APH_1325 APH_1325 1391665 1392915 + outer membrane protein%2C MSP2 family identified by match to protein family HMM PF01617 gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1325 APH_1326 APH_1326 secF secF 1393430 1394347 - protein-export membrane protein SecF identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR00966 gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1326 APH_1327 APH_1327 APH_1327 1394961 1395107 - hypothetical protein identified by Glimmer2%3B putative gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1327 APH_1328 APH_1328 p44-17 p44-17 1395183 1395803 - P44-17 outermembrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1328 APH_1329 APH_1329 p44-60 p44-60 1395874 1396629 - P44-60 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1329 APH_1330 APH_1330 p44-29 p44-29 1397007 1397669 - P44-29 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1330 APH_1331 APH_1331 smpB smpB 1398092 1398541 - SsrA-binding protein identified by match to protein family HMM PF01668%3B match to protein family HMM TIGR00086 gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1331 APH_1332 APH_1332 ribB ribB 1398549 1399178 - 3%2C4-dihydroxy-2-butanone 4-phosphate synthase identified by match to protein family HMM PF00926%3B match to protein family HMM TIGR00506 gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1332 APH_1333 APH_1333 greA greA 1399193 1399693 - transcription elongation factor GreA identified by similarity to SP:P21346%3B match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01462 gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1333 APH_1334 APH_1334 atpA atpA 1399721 1401241 - ATP synthase F1%2C alpha subunit identified by similarity to SP:P05036%3B match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR00962 gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1334 APH_1335 APH_1335 atpH atpH 1401260 1401802 - ATP synthase F1%2C delta subunit identified by match to protein family HMM PF00213%3B match to protein family HMM TIGR01145 gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1335 APH_1336 APH_1336 APH_1336 1401786 1401923 - hypothetical protein identified by Glimmer2%3B putative gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1336 APH_1337 APH_1337 APH_1337 1401987 1402247 - conserved hypothetical protein identified by similarity to GB:CAE28374.1 gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1337 APH_1338 APH_1338 APH_1338 1402250 1402342 - hypothetical protein identified by Glimmer2%3B putative gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1338 APH_1339 APH_1339 APH_1339 1402330 1403568 - conserved domain protein gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1339 APH_1340 APH_1340 APH_1340 1403565 1404275 - hypothetical protein identified by Glimmer2%3B putative gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1340 APH_1341 APH_1341 APH_1341 1404364 1405563 - lipoprotein releasing system%2C transmembrane protein%2C LolC/E family identified by match to protein family HMM PF02687%3B match to protein family HMM TIGR02212 gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1341 APH_1342 APH_1342 p44-31 p44-31 1406210 1406767 - P44-31 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1342 APH_1343 APH_1343 p44-58 p44-58 1407188 1407856 - P44-58 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1343 APH_1344 APH_1344 APH_1344 1408824 1409258 - conserved hypothetical protein TIGR00150 identified by similarity to GB:AAL02551.1%3B match to protein family HMM PF02367%3B match to protein family HMM TIGR00150 gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1344 APH_1345 APH_1345 APH_1345 1409278 1409979 - putative membrane protein identified by match to protein family HMM PF01027 gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1345 APH_1346 APH_1346 APH_1346 1410234 1411247 - putative aspartate-semialdehyde dehydrogenase identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774 gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1346 APH_1347 APH_1347 APH_1347 1411250 1411558 - conserved hypothetical protein identified by similarity to GB:AAS14718.1 gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1347 APH_1348 APH_1348 dnaX dnaX 1411570 1412940 - DNA polymerase III%2C subunits gamma and tau identified by similarity to GB:AAB61695.1%3B match to protein family HMM PF00004%3B match to protein family HMM TIGR02397 gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1348 APH_1349 APH_1349 gap gap 1413112 1414119 - glyceraldehyde-3-phosphate dehydrogenase%2C type I identified by similarity to SP:O34425%3B match to protein family HMM PF00044%3B match to protein family HMM PF02800 gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1349 APH_1350 APH_1350 p44-51 p44-51 1414281 1415249 + P44-51 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1350 APH_1351 APH_1351 p44-35 p44-35 1415634 1416467 + P44-35 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus%3B similar to HMM PF01617 gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1351 APH_1352 APH_1352 p44-30 p44-30 1416517 1417413 + P44-30 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus%3B similar to HMM PF01617 gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1352 APH_1353 APH_1353 APH_1353 1417557 1417700 + hypothetical protein identified by Glimmer2%3B putative gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1353 APH_1354 APH_1354 recA recA 1417716 1418780 + recA protein identified by similarity to SP:Q08327%3B match to protein family HMM PF00154%3B match to protein family HMM TIGR02012 gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1354 APH_1355 APH_1355 p44-79 p44-79 1418814 1420199 - P44-79 outer membrane protein encodes a full-length P44 outer membrane protein gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1355 APH_1356 APH_1356 APH_1356 1420398 1420511 - hypothetical protein identified by Glimmer2%3B putative gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1356 APH_1357 APH_1357 APH_1357 1420978 1421298 - undetectable in HL-60 cells by proteomic analysis%3B identified by Glimmer2 gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1357 APH_1358 APH_1358 APH_1358 1422028 1422888 + major outer membrane protein identified by similarity to GB:AAK28689.1%3B match to protein family HMM PF01617 gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1358 APH_1359 APH_1359 APH_1359 1423072 1423944 + major outer membrane protein OMP-1A identified by match to protein family HMM PF01617 gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1359 APH_1360 APH_1360 ubiD ubiD 1424029 1425522 + 3-octaprenyl-4-hydroxybenzoate carboxy-lyase identified by similarity to SP:P26615%3B match to protein family HMM PF01977%3B match to protein family HMM TIGR00148 gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1360 APH_1361 APH_1361 APH_1361 1425808 1426905 + major surface protein 2 identified by match to protein family HMM PF01617 gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1361 APH_1362 APH_1362 APH_1362 1426892 1426987 + hypothetical protein identified by Glimmer2%3B putative gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1362 APH_1363 APH_1363 APH_1363 1427206 1427331 - hypothetical protein identified by Glimmer2%3B putative gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1363 APH_1364 APH_1364 APH_1364 1427419 1427541 - hypothetical protein identified by Glimmer2%3B putative gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1364 APH_1365 APH_1365 APH_1365 1428358 1428516 - hypothetical protein identified by Glimmer2%3B putative gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1365 APH_1366 APH_1366 secD secD 1428520 1430046 - protein-export membrane protein SecD identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR01129 gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1366 APH_1367 APH_1367 uvrB uvrB 1430111 1432072 + excinuclease ABC%2C B subunit identified by similarity to SP:P07025%3B match to protein family HMM PF00271%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00631 gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1367 APH_1368 APH_1368 APH_1368 1432936 1433073 + hypothetical protein identified by Glimmer2%3B putative gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1368 APH_1369 APH_1369 APH_1369 1433283 1433498 + hypothetical protein identified by Glimmer2%3B putative gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1369 APH_1370 APH_1370 APH_1370 1433568 1433843 + hypothetical protein identified by Glimmer2%3B putative gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1370 APH_1371 APH_1371 APH_1371 1434552 1435424 - uracil-DNA glycosylase%2C family 4 identified by match to protein family HMM PF03167%3B match to protein family HMM TIGR00758 gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1371 APH_1372 APH_1372 def def 1435671 1436234 - peptide deformylase identified by similarity to SP:P27251%3B match to protein family HMM PF01327%3B match to protein family HMM TIGR00079 gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1372 APH_1373 APH_1373 APH_1373 1436300 1437025 + 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein identified by match to protein family HMM PF01553 gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1373 APH_1374 APH_1374 rpsT rpsT 1437151 1437441 + ribosomal protein S20 identified by match to protein family HMM PF01649%3B match to protein family HMM TIGR00029 gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1374 APH_1375 APH_1375 APH_1375 1439294 1439569 - peptide deformylase%2C truncated identified by similarity to SP:P27251%3B match to protein family HMM PF01327 gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1375 APH_1376 APH_1376 lgt lgt 1440342 1441175 - prolipoprotein diacylglyceryl transferase identified by match to protein family HMM PF01790%3B match to protein family HMM TIGR00544 gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1376 APH_1377 APH_1377 mviN mviN 1441260 1442768 + integral membrane protein MviN identified by match to protein family HMM PF03023%3B match to protein family HMM TIGR01695 gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1377 APH_1378 APH_1378 APH_1378 1442808 1443824 + conserved hypothetical protein identified by similarity to GB:AAS14447.1 gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1378 APH_1379 APH_1379 APH_1379 1444046 1444318 + hypothetical protein identified by Glimmer2%3B putative gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1379 APH_1380 APH_1380 APH_1380 1444598 1445020 - hypothetical protein identified by Glimmer2%3B putative gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1380 APH_1381 APH_1381 APH_1381 1445037 1445177 + hypothetical protein identified by Glimmer2%3B putative gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1381 APH_1382 APH_1382 APH_1382 1445637 1445867 + hypothetical protein identified by Glimmer2%3B putative gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1382 APH_1383 APH_1383 APH_1383 1445949 1446449 - hypothetical protein identified by Glimmer2%3B putative gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1383 APH_1384 APH_1384 APH_1384 1446608 1447090 - hypothetical protein identified by Glimmer2%3B putative gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1384 APH_1385 APH_1385 APH_1385 1447176 1447778 - hypothetical protein identified by Glimmer2%3B putative gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1385 APH_1386 APH_1386 APH_1386 1447911 1448342 - hypothetical protein identified by Glimmer2%3B putative gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1386 APH_1387 APH_1387 APH_1387 1448863 1450599 + HGE-2 protein gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1387 APH_1388 APH_1388 APH_1388 1450925 1451122 - hypothetical protein identified by Glimmer2%3B putative gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1388 APH_1389 APH_1389 p44-C p44-C 1451466 1451723 - P44 outer membrane protein%2C C-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1389 APH_1390 APH_1390 p44-20 p44-20 1451770 1452549 - P44-20 outer membrane protein%2C silent similar to outer membrane protein%2C MSP2 family (APH_1017)%3B p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1390 APH_1391 APH_1391 p44-9 p44-9 1452555 1453355 - P44-9 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus%3B similar to HMM PF01617 gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1391 APH_1392 APH_1392 p44-11 p44-11 1453433 1454572 - P44-11 outer membrane protein encodes a full-length P44 outer membrane protein gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1392 APH_1393 APH_1393 APH_1393 1454623 1454745 + hypothetical protein identified by Glimmer2%3B putative gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1393 APH_1394 APH_1394 APH_1394 1454943 1455551 - conserved hypothetical protein gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1394 APH_1395 APH_1395 APH_1395 1455628 1456533 - cation efflux family protein identified by similarity to SP:P75757%3B match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1395 APH_1396 APH_1396 APH_1396 1456540 1456612 - tRNA-Val tRNA gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1396 APH_1397 APH_1397 APH_1397 1456647 1457291 - putative heme exporter protein CcmB gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1397 APH_1398 APH_1398 APH_1398 1457417 1457851 + putative dnaK suppressor protein identified by similarity to SP:P18274%3B match to protein family HMM PF01258 gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1398 APH_1399 APH_1399 p44-C p44-C 1458112 1458228 - similar to P44 outer membrane protein%2C C-terminal fragment%3B expression not deteced in HL-60 cells gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1399 APH_1400 APH_1400 p44-37 p44-37 1458201 1458734 - P44-37 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1400 APH_1401 APH_1401 p44-22 p44-22 1458860 1459630 - P44-22 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1401 APH_1402 APH_1402 virD4 virD4 1460198 1462420 - type IV secretion system protein VirD4 identified by similarity to GB:AAM00422.1%3B match to protein family HMM PF02534 gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1402 APH_1403 APH_1403 virB11 virB11 1462472 1463470 - type IV secretion system protein VirB11 identified by similarity to GB:AAM00419.1%3B match to protein family HMM PF00437 gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1403 APH_1404 APH_1404 virB10 virB10 1463517 1464821 - type IV secretion system protein VirB10 identified by similarity to GB:AAM00418.1%3B match to protein family HMM PF03743 gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1404 APH_1405 APH_1405 virB9-1 virB9-1 1464845 1465690 - type IV secretion system protein VirB9 (VirB9-1) Name change from VirB9-2 to VirB9-1. PMID: 20670295 gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1405 APH_1406 APH_1406 virB8-1 virB8-1 1465674 1466390 - type IV secretion protein VirB8-1 Name change from VirB8-2 to VirB8-1. PMID: 20670295 gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1406 APH_1407 APH_1407 APH_1407 1466475 1466573 - hypothetical protein identified by Glimmer2%3B putative gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1407 APH_1408 APH_1408 p44-59 p44-59 1467138 1467998 - P44-59 outer membrane protein%2C silent p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1408 APH_1409 APH_1409 APH_1409 1468308 1469423 - putative DNA replication and repair protein RecF identified by similarity to SP:P05651 gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1409 APH_1410 APH_1410 APH_1410 1469558 1469677 - hypothetical protein identified by Glimmer2%3B putative gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1410 APH_1411 APH_1411 APH_1411 1470273 1470410 + hypothetical protein identified by Glimmer2%3B putative gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1411 APH_1412 APH_1412 APH_1412 1470771 1471214 - hypothetical protein identified by Glimmer2%3B putative gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1412 APH_1413 APH_1413 virB7 virB7 1034008 1034181 + type IV secretion system protein VirB7%2C putative New ORF based on homolog to A. marginale VirB7 lipoprotein. However%2C lipobox of APH_1413 does not present. PMID: 20670295%2C 20065028 gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1413 APH_1414 APH_1414 p44-84 p44-84 656999 657436 - P44-84 outer membrane protein%2C N-terminal fragment p44 gene encodes a full-length P44 outer membrane protein%2C which can be expressed through recombinatorial gene conversion to p44-18ES expression locus gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=APH_1414