YYU_00005 IPR001098 DNA-directed DNA polymerase, family A, palm domain YYU_00005 IPR002298 DNA polymerase A YYU_00005 IPR002421 5'-3' exonuclease, N-terminal YYU_00005 IPR008918 Helix-hairpin-helix motif, class 2 YYU_00005 IPR012337 Ribonuclease H-like domain YYU_00005 IPR018320 DNA polymerase 1 YYU_00005 IPR019760 DNA-directed DNA polymerase, family A, conserved site YYU_00005 IPR020045 5'-3' exonuclease, C-terminal domain YYU_00005 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal YYU_00005 IPR029060 PIN domain-like YYU_00005 IPR036279 YYU_00005 YYU_00005 IPR036397 YYU_00005 YYU_00010 IPR000056 Ribulose-phosphate 3-epimerase-like YYU_00010 IPR011060 Ribulose-phosphate binding barrel YYU_00010 IPR013785 Aldolase-type TIM barrel YYU_00010 IPR026019 Ribulose-phosphate 3-epimerase YYU_00015 IPR030802 YYU_00015 YYU_00020 IPR003439 ABC transporter-like YYU_00020 IPR003593 AAA+ ATPase domain YYU_00020 IPR017871 ABC transporter, conserved site YYU_00020 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 YYU_00020 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00035 IPR002818 ThiJ/PfpI YYU_00035 IPR029062 Class I glutamine amidotransferase-like YYU_00040 IPR002133 S-adenosylmethionine synthetase YYU_00040 IPR022628 S-adenosylmethionine synthetase, N-terminal YYU_00040 IPR022629 S-adenosylmethionine synthetase, central domain YYU_00040 IPR022630 S-adenosylmethionine synthetase, C-terminal YYU_00040 IPR022631 S-adenosylmethionine synthetase, conserved site YYU_00040 IPR022636 S-adenosylmethionine synthetase superfamily YYU_00050 IPR002938 Monooxygenase, FAD-binding YYU_00050 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 YYU_00050 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site YYU_00050 IPR036188 YYU_00050 YYU_00065 IPR002310 Glycine-tRNA ligase, alpha subunit YYU_00070 IPR008909 DALR anticodon binding YYU_00070 IPR015944 Glycine-tRNA ligase, beta subunit YYU_00075 IPR001305 Heat shock protein DnaJ, cysteine-rich domain YYU_00075 IPR001623 DnaJ domain YYU_00075 IPR002939 Chaperone DnaJ, C-terminal YYU_00075 IPR008971 HSP40/DnaJ peptide-binding YYU_00075 IPR012724 Chaperone DnaJ YYU_00075 IPR018253 DnaJ domain, conserved site YYU_00075 IPR036410 YYU_00075 YYU_00075 IPR036869 YYU_00075 YYU_00080 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal YYU_00080 IPR004393 Nicotinate-nucleotide pyrophosphorylase YYU_00080 IPR013785 Aldolase-type TIM barrel YYU_00080 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal YYU_00080 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD YYU_00080 IPR036068 YYU_00080 YYU_00080 IPR037128 YYU_00080 YYU_00085 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY YYU_00090 IPR002176 Crossover junction endodeoxyribonuclease RuvC YYU_00090 IPR012337 Ribonuclease H-like domain YYU_00090 IPR036397 YYU_00090 YYU_00095 IPR000298 Cytochrome c oxidase subunit III domain YYU_00095 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle YYU_00095 IPR035973 YYU_00095 YYU_00100 IPR000257 Uroporphyrinogen decarboxylase (URO-D) YYU_00100 IPR006361 Uroporphyrinogen decarboxylase HemE YYU_00100 IPR038071 YYU_00100 YYU_00105 IPR000644 CBS domain YYU_00105 IPR005170 Transporter-associated domain YYU_00105 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YYU_00105 IPR036318 YYU_00105 YYU_00110 IPR006433 Prohead protease, HK97 family YYU_00115 IPR006427 Phage portal protein, HK97 YYU_00115 IPR006944 Bacteriophage/Gene transfer agent portal protein YYU_00120 IPR013216 Methyltransferase type 11 YYU_00120 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_00125 IPR003473 Quinolinate synthetase A YYU_00125 IPR023066 Quinolinate synthase A, type 2 YYU_00125 IPR036094 YYU_00125 YYU_00130 IPR000813 7Fe ferredoxin YYU_00130 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YYU_00130 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YYU_00130 IPR022569 Ferredoxin, C-terminal YYU_00135 IPR002566 Surface antigen msp4 YYU_00145 IPR002566 Surface antigen msp4 YYU_00165 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YYU_00165 IPR002305 Aminoacyl-tRNA synthetase, class Ic YYU_00165 IPR002306 Tryptophan-tRNA ligase YYU_00165 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_00165 IPR024109 Tryptophan-tRNA ligase, bacterial-type YYU_00170 IPR000740 GrpE nucleotide exchange factor YYU_00170 IPR009012 GrpE nucleotide exchange factor, head YYU_00170 IPR013805 GrpE nucleotide exchange factor, coiled-coil YYU_00175 IPR002125 CMP/dCMP deaminase, zinc-binding YYU_00175 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal YYU_00175 IPR004794 Riboflavin biosynthesis protein RibD YYU_00175 IPR016192 APOBEC/CMP deaminase, zinc-binding YYU_00175 IPR016193 Cytidine deaminase-like YYU_00175 IPR024072 Dihydrofolate reductase-like domain YYU_00180 IPR004468 CTP synthase YYU_00180 IPR017456 CTP synthase, N-terminal YYU_00180 IPR017926 Glutamine amidotransferase YYU_00180 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00180 IPR029062 Class I glutamine amidotransferase-like YYU_00185 IPR004692 Preprotein translocase SecG subunit YYU_00190 IPR002104 Integrase, catalytic YYU_00190 IPR004107 Integrase, SAM-like, N-terminal YYU_00190 IPR010998 Integrase, Lambda-type, N-terminal YYU_00190 IPR011010 DNA breaking-rejoining enzyme, catalytic core YYU_00190 IPR013762 Integrase-like, catalytic core YYU_00195 IPR003439 ABC transporter-like YYU_00195 IPR003593 AAA+ ATPase domain YYU_00195 IPR017871 ABC transporter, conserved site YYU_00195 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00200 IPR002505 Phosphate acetyl/butaryl transferase YYU_00200 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase YYU_00200 IPR012301 Malic enzyme, N-terminal domain YYU_00200 IPR012302 Malic enzyme, NAD-binding YYU_00200 IPR015884 Malic enzyme, conserved site YYU_00200 IPR036291 YYU_00200 YYU_00200 IPR037062 YYU_00200 YYU_00205 IPR032712 YYU_00205 YYU_00210 IPR001516 NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YYU_00210 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YYU_00210 IPR003918 NADH:ubiquinone oxidoreductase YYU_00220 IPR003399 Mammalian cell entry-related YYU_00220 IPR030970 YYU_00220 YYU_00225 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 YYU_00230 IPR003796 Ribonucleotide reductase regulator NrdR-like YYU_00230 IPR005144 ATP-cone YYU_00250 IPR026045 Ferric binding protein YYU_00255 IPR005651 Uncharacterised protein family UPF0434/Trm112 YYU_00255 IPR038053 YYU_00255 YYU_00260 IPR005828 General substrate transporter YYU_00260 IPR036259 YYU_00260 YYU_00265 IPR000307 Ribosomal protein S16 YYU_00265 IPR023803 Ribosomal protein S16 domain YYU_00280 IPR002347 Glucose/ribitol dehydrogenase YYU_00280 IPR036291 YYU_00280 YYU_00285 IPR002133 S-adenosylmethionine synthetase YYU_00285 IPR022628 S-adenosylmethionine synthetase, N-terminal YYU_00285 IPR022629 S-adenosylmethionine synthetase, central domain YYU_00285 IPR022630 S-adenosylmethionine synthetase, C-terminal YYU_00285 IPR022631 S-adenosylmethionine synthetase, conserved site YYU_00285 IPR022636 S-adenosylmethionine synthetase superfamily YYU_00295 IPR002319 Phenylalanyl-tRNA synthetase YYU_00295 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal YYU_00295 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit YYU_00295 IPR010978 tRNA-binding arm YYU_00295 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial YYU_00300 IPR005813 Ribosomal protein L20 YYU_00300 IPR035566 YYU_00300 YYU_00305 IPR001706 Ribosomal protein L35, non-mitochondrial YYU_00305 IPR018265 Ribosomal protein L35, conserved site YYU_00305 IPR021137 Ribosomal protein L35 YYU_00305 IPR037229 YYU_00305 YYU_00310 IPR010421 Protein of unknown function DUF1013 YYU_00315 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YYU_00315 IPR003593 AAA+ ATPase domain YYU_00315 IPR004665 Transcription termination factor Rho YYU_00315 IPR011112 Rho termination factor, N-terminal YYU_00315 IPR011113 Rho termination factor, RNA-binding YYU_00315 IPR011129 Cold shock protein YYU_00315 IPR012340 Nucleic acid-binding, OB-fold YYU_00315 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00315 IPR036269 YYU_00315 YYU_00320 IPR001100 YYU_00320 YYU_00320 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYU_00320 IPR006258 Dihydrolipoamide dehydrogenase YYU_00320 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YYU_00320 IPR016156 FAD/NAD-linked reductase, dimerisation domain YYU_00320 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YYU_00320 IPR036188 YYU_00320 YYU_00325 IPR001623 DnaJ domain YYU_00325 IPR036869 YYU_00325 YYU_00330 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal YYU_00330 IPR014824 Scaffold protein Nfu/NifU, N-terminal YYU_00330 IPR034904 YYU_00330 YYU_00330 IPR035433 YYU_00330 YYU_00330 IPR036498 YYU_00330 YYU_00340 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 YYU_00340 IPR010035 ThiS, thiamine-biosynthesis YYU_00340 IPR012675 Beta-grasp domain YYU_00340 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp YYU_00345 IPR013785 Aldolase-type TIM barrel YYU_00345 IPR033983 YYU_00345 YYU_00355 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YYU_00355 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YYU_00355 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial YYU_00355 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding YYU_00355 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_00355 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YYU_00355 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 YYU_00370 IPR027304 Trigger factor/SurA domain YYU_00375 IPR004398 RNA methyltransferase, RsmD YYU_00375 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_00385 IPR004776 Auxin efflux carrier YYU_00390 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial YYU_00390 IPR038532 YYU_00390 YYU_00395 IPR003761 Exonuclease VII, small subunit YYU_00395 IPR037004 YYU_00395 YYU_00400 IPR005746 Thioredoxin YYU_00400 IPR013766 Thioredoxin domain YYU_00400 IPR017937 Thioredoxin, conserved site YYU_00400 IPR036249 YYU_00400 YYU_00405 IPR010258 Conjugal transfer, TrbG/VirB9/CagX YYU_00405 IPR014148 P-type conjugative transfer protein VirB9 YYU_00405 IPR038161 YYU_00405 YYU_00410 IPR001017 Dehydrogenase, E1 component YYU_00410 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y YYU_00410 IPR029061 Thiamin diphosphate-binding fold YYU_00415 IPR000073 Alpha/beta hydrolase fold-1 YYU_00415 IPR029058 Alpha/Beta hydrolase fold YYU_00430 IPR002376 Formyl transferase, N-terminal YYU_00430 IPR004607 Phosphoribosylglycinamide formyltransferase YYU_00430 IPR036477 YYU_00430 YYU_00435 IPR000644 CBS domain YYU_00435 IPR001093 IMP dehydrogenase/GMP reductase YYU_00435 IPR005990 Inosine-5'-monophosphate dehydrogenase YYU_00435 IPR013785 Aldolase-type TIM barrel YYU_00435 IPR015875 IMP dehydrogenase / GMP reductase, conserved site YYU_00440 IPR002504 Inorganic polyphosphate/ATP-NAD kinase YYU_00440 IPR016064 ATP-NAD kinase-like domain YYU_00440 IPR017437 ATP-NAD kinase, PpnK-type, all-beta YYU_00440 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 YYU_00445 IPR002150 Ribosomal protein L31 YYU_00445 IPR034704 YYU_00445 YYU_00450 IPR006944 Bacteriophage/Gene transfer agent portal protein YYU_00455 IPR001227 Acyl transferase domain YYU_00455 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type YYU_00455 IPR014043 Acyl transferase YYU_00455 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase YYU_00455 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding YYU_00455 IPR020801 Polyketide synthase, acyl transferase domain YYU_00455 IPR024925 Malonyl CoA-acyl carrier protein transacylase YYU_00460 IPR018094 Thymidylate kinase YYU_00460 IPR018095 Thymidylate kinase, conserved site YYU_00460 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00460 IPR039430 YYU_00460 YYU_00465 IPR011701 Major facilitator superfamily YYU_00465 IPR036259 YYU_00465 YYU_00475 IPR007379 Tim44-like domain YYU_00475 IPR016985 Uncharacterised conserved protein UCP031890, Tim44-related YYU_00475 IPR032710 YYU_00475 YYU_00480 IPR003708 Bacterial protein export chaperone SecB YYU_00480 IPR035958 YYU_00480 YYU_00485 IPR012336 Thioredoxin-like fold YYU_00485 IPR036249 YYU_00485 YYU_00495 IPR001431 Peptidase M16, zinc-binding site YYU_00495 IPR007863 Peptidase M16, C-terminal domain YYU_00495 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YYU_00495 IPR011765 Peptidase M16, N-terminal YYU_00505 IPR004136 2-nitropropane dioxygenase, NPD YYU_00505 IPR013785 Aldolase-type TIM barrel YYU_00510 IPR036393 YYU_00510 YYU_00525 IPR001783 Lumazine-binding protein YYU_00525 IPR017938 Riboflavin synthase-like beta-barrel YYU_00525 IPR023366 ATP synthase subunit alpha-like domain YYU_00525 IPR026017 Lumazine-binding domain YYU_00540 IPR001650 Helicase, C-terminal YYU_00540 IPR003711 CarD-like/TRCF domain YYU_00540 IPR004576 Transcription-repair coupling factor YYU_00540 IPR005118 Transcription-repair-coupling factor, C-terminal domain YYU_00540 IPR011545 DEAD/DEAH box helicase domain YYU_00540 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YYU_00540 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00540 IPR036101 YYU_00540 YYU_00540 IPR037235 YYU_00540 YYU_00550 IPR002156 Ribonuclease H domain YYU_00550 IPR012337 Ribonuclease H-like domain YYU_00550 IPR022892 Ribonuclease H YYU_00550 IPR036397 YYU_00550 YYU_00555 IPR025263 Domain of unknown function DUF3971 YYU_00555 IPR032712 YYU_00555 YYU_00565 IPR001048 Aspartate/glutamate/uridylate kinase YYU_00565 IPR011817 Uridylate kinase YYU_00565 IPR015963 Uridylate kinase, bacteria YYU_00565 IPR036393 YYU_00565 YYU_00570 IPR002661 Ribosome recycling factor YYU_00570 IPR023584 Ribosome recycling factor domain YYU_00570 IPR036191 YYU_00570 YYU_00605 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase YYU_00605 IPR018236 SAICAR synthetase, conserved site YYU_00605 IPR028923 SAICAR synthetase/ADE2, N-terminal YYU_00610 IPR004154 Anticodon-binding YYU_00610 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit YYU_00610 IPR015807 Histidine-tRNA ligase YYU_00610 IPR036621 YYU_00610 YYU_00615 IPR012336 Thioredoxin-like fold YYU_00615 IPR036249 YYU_00615 YYU_00620 IPR003780 COX15/CtaA family YYU_00620 IPR023754 Heme A synthase, type 2 YYU_00630 IPR003439 ABC transporter-like YYU_00630 IPR005895 ABC transporter, haem export, CcmA YYU_00630 IPR017871 ABC transporter, conserved site YYU_00630 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00640 IPR003008 Tubulin/FtsZ, GTPase domain YYU_00640 IPR008280 Tubulin/FtsZ, C-terminal YYU_00640 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain YYU_00640 IPR024757 Cell division protein FtsZ, C-terminal YYU_00640 IPR037103 YYU_00640 YYU_00645 IPR011962 Deoxycytidine triphosphate deaminase YYU_00645 IPR036157 YYU_00645 YYU_00650 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit YYU_00675 IPR002059 Cold-shock protein, DNA-binding YYU_00675 IPR011129 Cold shock protein YYU_00675 IPR012156 Cold shock, CspA YYU_00675 IPR012340 Nucleic acid-binding, OB-fold YYU_00680 IPR003594 Histidine kinase-like ATPase, C-terminal domain YYU_00680 IPR003660 HAMP linker domain YYU_00680 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YYU_00680 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YYU_00680 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator YYU_00680 IPR036097 YYU_00680 YYU_00680 IPR036890 YYU_00680 YYU_00685 IPR002562 3'-5' exonuclease domain YYU_00685 IPR010997 HRDC-like YYU_00685 IPR012337 Ribonuclease H-like domain YYU_00685 IPR036397 YYU_00685 YYU_00690 IPR001357 BRCT domain YYU_00690 IPR001679 NAD-dependent DNA ligase YYU_00690 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type YYU_00690 IPR004150 NAD-dependent DNA ligase, OB-fold YYU_00690 IPR010994 RuvA domain 2-like YYU_00690 IPR012340 Nucleic acid-binding, OB-fold YYU_00690 IPR013839 NAD-dependent DNA ligase, adenylation YYU_00690 IPR013840 NAD-dependent DNA ligase, N-terminal YYU_00690 IPR018239 NAD-dependent DNA ligase, active site YYU_00690 IPR036420 YYU_00690 YYU_00695 IPR002109 Glutaredoxin YYU_00695 IPR004480 Monothiol glutaredoxin-related YYU_00695 IPR014434 Monothiol glutaredoxin YYU_00695 IPR036249 YYU_00695 YYU_00700 IPR002634 BolA protein YYU_00700 IPR036065 YYU_00700 YYU_00705 IPR013740 Redoxin YYU_00705 IPR036249 YYU_00705 YYU_00710 IPR002566 Surface antigen msp4 YYU_00710 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_00720 IPR002566 Surface antigen msp4 YYU_00725 IPR002566 Surface antigen msp4 YYU_00725 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_00730 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YYU_00730 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00735 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit YYU_00735 IPR011853 TRAP transporter, 4TM/12TM fusion protein YYU_00735 IPR021814 Protein of unknown function DUF3394 YYU_00740 IPR003825 Colicin V production, CvpA YYU_00745 IPR000529 Ribosomal protein S6 YYU_00745 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 YYU_00745 IPR020814 Ribosomal protein S6, plastid/chloroplast YYU_00745 IPR035980 YYU_00745 YYU_00750 IPR001648 Ribosomal protein S18 YYU_00750 IPR036870 YYU_00750 YYU_00755 IPR009027 Ribosomal protein L9/RNase H1, N-terminal YYU_00755 IPR020069 Ribosomal protein L9, C-terminal YYU_00755 IPR020070 Ribosomal protein L9, N-terminal YYU_00755 IPR020594 Ribosomal protein L9, bacteria/chloroplast YYU_00755 IPR036791 YYU_00755 YYU_00755 IPR036935 YYU_00755 YYU_00760 IPR001085 Serine hydroxymethyltransferase YYU_00760 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YYU_00760 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YYU_00760 IPR015424 Pyridoxal phosphate-dependent transferase YYU_00760 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site YYU_00760 IPR039429 YYU_00760 YYU_00765 IPR002908 Frataxin/CyaY YYU_00765 IPR036524 YYU_00765 YYU_00770 IPR003439 ABC transporter-like YYU_00770 IPR003593 AAA+ ATPase domain YYU_00770 IPR011527 ABC transporter type 1, transmembrane domain YYU_00770 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00770 IPR036640 YYU_00770 YYU_00775 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YYU_00775 IPR003953 FAD binding domain YYU_00775 IPR011281 Succinate dehydrogenase, flavoprotein subunit YYU_00775 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YYU_00775 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YYU_00775 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain YYU_00775 IPR036188 YYU_00775 YYU_00775 IPR037099 YYU_00775 YYU_00780 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YYU_00780 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YYU_00780 IPR009051 Alpha-helical ferredoxin YYU_00780 IPR012675 Beta-grasp domain YYU_00780 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YYU_00780 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YYU_00780 IPR036010 YYU_00780 YYU_00790 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site YYU_00790 IPR003953 FAD binding domain YYU_00790 IPR011281 Succinate dehydrogenase, flavoprotein subunit YYU_00790 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YYU_00790 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal YYU_00790 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain YYU_00790 IPR036188 YYU_00790 YYU_00790 IPR037099 YYU_00790 YYU_00795 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein YYU_00795 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site YYU_00795 IPR009051 Alpha-helical ferredoxin YYU_00795 IPR012675 Beta-grasp domain YYU_00795 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YYU_00795 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal YYU_00795 IPR036010 YYU_00795 YYU_00800 IPR003669 Thymidylate synthase ThyX YYU_00800 IPR036098 YYU_00800 YYU_00805 IPR004812 Drug resistance transporter Bcr/CmlA subfamily YYU_00805 IPR011701 Major facilitator superfamily YYU_00805 IPR036259 YYU_00805 YYU_00815 IPR002310 Glycine-tRNA ligase, alpha subunit YYU_00825 IPR003593 AAA+ ATPase domain YYU_00825 IPR004605 DNA helicase, Holliday junction RuvB type YYU_00825 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal YYU_00825 IPR008824 DNA helicase, Holliday junction RuvB type, N-terminal YYU_00825 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00825 IPR036388 YYU_00825 YYU_00825 IPR036390 YYU_00825 YYU_00830 IPR000085 Bacterial DNA recombination protein RuvA YYU_00830 IPR010994 RuvA domain 2-like YYU_00830 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal YYU_00830 IPR012340 Nucleic acid-binding, OB-fold YYU_00830 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial YYU_00830 IPR036267 YYU_00830 YYU_00835 IPR002541 Cytochrome c assembly protein YYU_00835 IPR003557 Cytochrome c-type biogenesis protein CcmC YYU_00840 IPR008145 Guanylate kinase/L-type calcium channel beta subunit YYU_00840 IPR017665 Guanylate kinase YYU_00840 IPR020590 Guanylate kinase, conserved site YYU_00840 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00845 IPR002566 Surface antigen msp4 YYU_00845 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_00850 IPR002566 Surface antigen msp4 YYU_00855 IPR002566 Surface antigen msp4 YYU_00855 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_00860 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase YYU_00860 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YYU_00860 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YYU_00860 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site YYU_00860 IPR036291 YYU_00860 YYU_00875 IPR000073 Alpha/beta hydrolase fold-1 YYU_00875 IPR022742 Putative lysophospholipase YYU_00875 IPR029058 Alpha/Beta hydrolase fold YYU_00880 IPR000073 Alpha/beta hydrolase fold-1 YYU_00880 IPR029058 Alpha/Beta hydrolase fold YYU_00885 IPR002327 Cytochrome c, class IA/ IB YYU_00885 IPR009056 Cytochrome c-like domain YYU_00885 IPR036909 YYU_00885 YYU_00890 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YYU_00895 IPR000121 PEP-utilising enzyme, C-terminal YYU_00895 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding YYU_00895 IPR008279 PEP-utilising enzyme, mobile domain YYU_00895 IPR010121 Pyruvate, phosphate dikinase YYU_00895 IPR013815 ATP-grasp fold, subdomain 1 YYU_00895 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain YYU_00895 IPR018274 PEP-utilising enzyme, active site YYU_00895 IPR023151 PEP-utilising enzyme, conserved site YYU_00895 IPR036637 YYU_00895 YYU_00900 IPR010432 RDD YYU_00905 IPR006439 HAD hydrolase, subfamily IA YYU_00905 IPR023214 HAD-like domain YYU_00905 IPR036412 YYU_00905 YYU_00920 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb YYU_00920 IPR004115 GAD-like domain YYU_00920 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) YYU_00920 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type YYU_00920 IPR004524 Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type YYU_00920 IPR012340 Nucleic acid-binding, OB-fold YYU_00920 IPR029351 GAD domain YYU_00925 IPR007055 BON domain YYU_00925 IPR014004 Transport-associated and nodulation domain, bacteria YYU_00930 IPR004215 Prokaryotic glutathione synthetase, N-terminal YYU_00930 IPR004218 Prokaryotic glutathione synthetase, ATP-binding YYU_00930 IPR006284 Glutathione synthetase, prokaryotic YYU_00930 IPR013815 ATP-grasp fold, subdomain 1 YYU_00930 IPR016185 Pre-ATP-grasp domain YYU_00940 IPR005548 Cell division protein FtsQ/DivIB YYU_00940 IPR013685 Polypeptide-transport-associated, FtsQ-type YYU_00945 IPR001789 Signal transduction response regulator, receiver domain YYU_00945 IPR002078 RNA polymerase sigma factor 54 interaction domain YYU_00945 IPR002197 DNA binding HTH domain, Fis-type YYU_00945 IPR003593 AAA+ ATPase domain YYU_00945 IPR009057 Homeodomain-like YYU_00945 IPR011006 CheY-like superfamily YYU_00945 IPR025944 Sigma-54 interaction domain, conserved site YYU_00945 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_00955 IPR001789 Signal transduction response regulator, receiver domain YYU_00955 IPR011006 CheY-like superfamily YYU_00960 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal YYU_00960 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent YYU_00960 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YYU_00960 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YYU_00960 IPR013328 Dehydrogenase, multihelical YYU_00960 IPR036291 YYU_00960 YYU_00965 IPR002104 Integrase, catalytic YYU_00965 IPR004107 Integrase, SAM-like, N-terminal YYU_00965 IPR010998 Integrase, Lambda-type, N-terminal YYU_00965 IPR011010 DNA breaking-rejoining enzyme, catalytic core YYU_00965 IPR013762 Integrase-like, catalytic core YYU_00975 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase YYU_00975 IPR010918 AIR synthase-related protein, C-terminal domain YYU_00975 IPR016188 PurM, N-terminal-like YYU_00975 IPR036676 YYU_00975 YYU_00975 IPR036921 YYU_00975 YYU_00980 IPR018762 Protein of unknown function DUF2328 YYU_00980 IPR036890 YYU_00980 YYU_00990 IPR016188 PurM, N-terminal-like YYU_00990 IPR036921 YYU_00990 YYU_00995 IPR000160 GGDEF domain YYU_00995 IPR029787 Nucleotide cyclase YYU_01000 IPR004394 Protein Iojap/ribosomal silencing factor RsfS YYU_01005 IPR001915 Peptidase M48 YYU_01005 IPR011990 Tetratricopeptide-like helical domain YYU_01015 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase YYU_01015 IPR010918 AIR synthase-related protein, C-terminal domain YYU_01015 IPR016188 PurM, N-terminal-like YYU_01015 IPR036676 YYU_01015 YYU_01015 IPR036921 YYU_01015 YYU_01025 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YYU_01025 IPR035907 YYU_01025 YYU_01030 IPR010074 Phosphoribosylformylglycinamidine synthase II YYU_01030 IPR010918 AIR synthase-related protein, C-terminal domain YYU_01030 IPR016188 PurM, N-terminal-like YYU_01030 IPR036676 YYU_01030 YYU_01030 IPR036921 YYU_01030 YYU_01040 IPR011050 Pectin lyase fold/virulence factor YYU_01050 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB YYU_01050 IPR006638 Elongator protein 3/MiaB/NifB YYU_01050 IPR007197 Radical SAM YYU_01050 IPR010722 Biotin and thiamin synthesis-associated domain YYU_01050 IPR013785 Aldolase-type TIM barrel YYU_01050 IPR024177 Biotin synthase YYU_01060 IPR009922 Protein of unknown function DUF1457 YYU_01065 IPR011055 Duplicated hybrid motif YYU_01065 IPR016047 Peptidase M23 YYU_01070 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase YYU_01075 IPR002218 Glucose-inhibited division protein A-related YYU_01075 IPR004416 Glucose-inhibited division protein A YYU_01075 IPR020595 Glucose-inhibited division protein A-related, conserved site YYU_01075 IPR026904 GidA associated domain 3 YYU_01075 IPR036188 YYU_01075 YYU_01080 IPR010075 Phosphoribosylformylglycinamidine synthase I YYU_01080 IPR029062 Class I glutamine amidotransferase-like YYU_01090 IPR002566 Surface antigen msp4 YYU_01115 IPR002376 Formyl transferase, N-terminal YYU_01115 IPR004607 Phosphoribosylglycinamide formyltransferase YYU_01115 IPR036477 YYU_01115 YYU_01120 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal YYU_01120 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal YYU_01120 IPR011356 Leucine aminopeptidase/peptidase B YYU_01120 IPR023042 Peptidase M17, leucine aminopeptidase YYU_01125 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal YYU_01125 IPR015889 Intradiol ring-cleavage dioxygenase, core YYU_01140 IPR001270 ClpA/B family YYU_01140 IPR003593 AAA+ ATPase domain YYU_01140 IPR003959 ATPase, AAA-type, core YYU_01140 IPR004176 Clp, N-terminal YYU_01140 IPR018368 ClpA/B, conserved site 1 YYU_01140 IPR019489 Clp ATPase, C-terminal YYU_01140 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01140 IPR028299 ClpA/B, conserved site 2 YYU_01140 IPR036628 YYU_01140 YYU_01145 IPR002347 Glucose/ribitol dehydrogenase YYU_01145 IPR020904 Short-chain dehydrogenase/reductase, conserved site YYU_01145 IPR036291 YYU_01145 YYU_01160 IPR001844 Chaperonin Cpn60 YYU_01160 IPR002423 Chaperonin Cpn60/TCP-1 YYU_01160 IPR018370 Chaperonin Cpn60, conserved site YYU_01160 IPR027409 GroEL-like apical domain YYU_01160 IPR027410 TCP-1-like chaperonin intermediate domain YYU_01160 IPR027413 GroEL-like equatorial domain YYU_01165 IPR011032 GroES (chaperonin 10)-like YYU_01165 IPR020818 Chaperonin Cpn10 YYU_01165 IPR037124 YYU_01165 YYU_01170 IPR001405 RadC protein YYU_01170 IPR010994 RuvA domain 2-like YYU_01170 IPR020891 Uncharacterised protein family UPF0758, conserved site YYU_01170 IPR025657 RadC-like JAB domain YYU_01175 IPR000544 Octanoyltransferase YYU_01175 IPR004143 Biotin/lipoate A/B protein ligase YYU_01180 IPR002195 Dihydroorotase, conserved site YYU_01180 IPR004722 Dihydroorotase YYU_01180 IPR006680 Amidohydrolase 1 YYU_01180 IPR011059 Metal-dependent hydrolase, composite domain YYU_01180 IPR032466 YYU_01180 YYU_01185 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal YYU_01185 IPR035929 YYU_01185 YYU_01190 IPR000362 Fumarate lyase family YYU_01190 IPR005677 Fumarate hydratase, class II YYU_01190 IPR008948 L-Aspartase-like YYU_01190 IPR018951 Fumarase C, C-terminal YYU_01190 IPR020557 Fumarate lyase, conserved site YYU_01190 IPR022761 Fumarate lyase, N-terminal YYU_01190 IPR024083 Fumarase/histidase, N-terminal YYU_01200 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YYU_01200 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain YYU_01200 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain YYU_01200 IPR006275 Carbamoyl-phosphate synthase, large subunit YYU_01200 IPR011607 Methylglyoxal synthase-like domain YYU_01200 IPR016185 Pre-ATP-grasp domain YYU_01200 IPR036897 YYU_01200 YYU_01200 IPR036914 YYU_01200 YYU_01205 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB YYU_01205 IPR017945 DHBP synthase RibB-like alpha/beta domain YYU_01210 IPR000489 Pterin-binding YYU_01210 IPR006390 Dihydropteroate synthase YYU_01210 IPR011005 Dihydropteroate synthase-like YYU_01220 IPR003439 ABC transporter-like YYU_01220 IPR003593 AAA+ ATPase domain YYU_01220 IPR010128 ATPase, type I secretion system, PrtD YYU_01220 IPR011527 ABC transporter type 1, transmembrane domain YYU_01220 IPR017871 ABC transporter, conserved site YYU_01220 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01220 IPR036640 YYU_01220 YYU_01225 IPR011032 GroES (chaperonin 10)-like YYU_01225 IPR013149 Alcohol dehydrogenase, C-terminal YYU_01225 IPR013154 Alcohol dehydrogenase GroES-like YYU_01225 IPR020843 Polyketide synthase, enoylreductase YYU_01225 IPR036291 YYU_01225 YYU_01230 IPR014017 DNA helicase, UvrD-like, C-terminal YYU_01230 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01230 IPR034739 YYU_01230 YYU_01235 IPR002110 Ankyrin repeat YYU_01235 IPR036770 YYU_01235 YYU_01240 IPR001107 Band 7 protein YYU_01240 IPR036013 YYU_01240 YYU_01250 IPR005654 ATPase, AFG1-like YYU_01250 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01255 IPR001015 Ferrochelatase YYU_01255 IPR019772 Ferrochelatase, active site YYU_01265 IPR007838 Cell division protein ZapA-like YYU_01265 IPR036192 YYU_01265 YYU_01270 IPR025310 Protein of unknown function DUF4164 YYU_01275 IPR005474 Transketolase, N-terminal YYU_01275 IPR029061 Thiamin diphosphate-binding fold YYU_01285 IPR000119 Histone-like bacterial DNA-binding protein YYU_01285 IPR010992 Integration host factor (IHF)-like DNA-binding domain YYU_01290 IPR002142 Peptidase S49 YYU_01290 IPR004635 Peptidase S49, SppA YYU_01290 IPR029045 ClpP/crotonase-like domain YYU_01295 IPR003029 Ribosomal protein S1, RNA-binding domain YYU_01295 IPR012340 Nucleic acid-binding, OB-fold YYU_01295 IPR022967 RNA-binding domain, S1 YYU_01300 IPR003136 Cytidylate kinase YYU_01300 IPR011994 Cytidylate kinase domain YYU_01300 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01305 IPR001537 tRNA/rRNA methyltransferase, SpoU type YYU_01305 IPR004441 RNA methyltransferase TrmH family YYU_01305 IPR013123 RNA 2-O ribose methyltransferase, substrate binding YYU_01305 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YYU_01305 IPR029028 Alpha/beta knot methyltransferases YYU_01305 IPR029064 50S ribosomal protein L30e-like YYU_01320 IPR000795 Elongation factor, GTP-binding domain YYU_01320 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YYU_01320 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YYU_01320 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YYU_01320 IPR005225 Small GTP-binding protein domain YYU_01320 IPR009000 Translation protein, beta-barrel domain YYU_01320 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YYU_01320 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01320 IPR031157 YYU_01320 YYU_01325 IPR001848 Ribosomal protein S10 YYU_01325 IPR027486 Ribosomal protein S10 domain YYU_01325 IPR036838 YYU_01325 YYU_01330 IPR000597 Ribosomal protein L3 YYU_01330 IPR009000 Translation protein, beta-barrel domain YYU_01330 IPR019926 Ribosomal protein L3, conserved site YYU_01330 IPR019927 Ribosomal protein L3, bacterial/organelle-type YYU_01335 IPR002136 Ribosomal protein L4/L1e YYU_01335 IPR013005 Ribosomal protein L4/L1e, bacterial-type YYU_01335 IPR023574 Ribosomal protein L4 domain YYU_01340 IPR012677 Nucleotide-binding, alpha-beta plait YYU_01340 IPR012678 Ribosomal protein L23/L15e core domain YYU_01340 IPR013025 Ribosomal protein L25/L23 YYU_01345 IPR002171 Ribosomal protein L2 YYU_01345 IPR005880 Ribosomal protein L2, bacterial/organellar-type YYU_01345 IPR008991 Translation protein SH3-like domain YYU_01345 IPR012340 Nucleic acid-binding, OB-fold YYU_01345 IPR014722 Ribosomal protein L2 domain 2 YYU_01345 IPR014726 Ribosomal protein L2, domain 3 YYU_01345 IPR022666 Ribosomal Proteins L2, RNA binding domain YYU_01345 IPR022669 Ribosomal protein L2, C-terminal YYU_01345 IPR022671 Ribosomal protein L2, conserved site YYU_01350 IPR002222 Ribosomal protein S19/S15 YYU_01350 IPR005732 Ribosomal protein S19, bacterial-type YYU_01350 IPR020934 Ribosomal protein S19 conserved site YYU_01350 IPR023575 Ribosomal protein S19, superfamily YYU_01355 IPR001063 Ribosomal protein L22/L17 YYU_01355 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type YYU_01355 IPR036394 YYU_01355 YYU_01360 IPR001351 Ribosomal protein S3, C-terminal YYU_01360 IPR004044 K Homology domain, type 2 YYU_01360 IPR004087 K Homology domain YYU_01360 IPR005704 Ribosomal protein S3, bacterial YYU_01360 IPR009019 K homology domain, prokaryotic type YYU_01360 IPR015946 K homology domain-like, alpha/beta YYU_01360 IPR018280 Ribosomal protein S3, conserved site YYU_01360 IPR036419 YYU_01360 YYU_01365 IPR000114 Ribosomal protein L16 YYU_01365 IPR016180 Ribosomal protein L10e/L16 YYU_01365 IPR020798 Ribosomal protein L16, conserved site YYU_01365 IPR036920 YYU_01365 YYU_01370 IPR001854 Ribosomal protein L29 YYU_01370 IPR036049 YYU_01370 YYU_01375 IPR000266 Ribosomal protein S17 YYU_01375 IPR012340 Nucleic acid-binding, OB-fold YYU_01375 IPR019984 Ribosomal protein S17, bacterial-type YYU_01380 IPR000218 Ribosomal protein L14b/L23e YYU_01380 IPR005745 Ribosomal protein L14, bacterial-type YYU_01380 IPR019972 Ribosomal protein L14 conserved site YYU_01380 IPR036853 YYU_01380 YYU_01385 IPR003256 Ribosomal protein L24 YYU_01385 IPR005824 KOW YYU_01385 IPR005825 Ribosomal protein L24/L26, conserved site YYU_01385 IPR008991 Translation protein SH3-like domain YYU_01385 IPR014722 Ribosomal protein L2 domain 2 YYU_01390 IPR002132 Ribosomal protein L5 YYU_01390 IPR020930 Ribosomal protein L5, bacterial-type YYU_01390 IPR022803 Ribosomal protein L5 domain YYU_01390 IPR031309 YYU_01390 YYU_01390 IPR031310 YYU_01390 YYU_01395 IPR001209 Ribosomal protein S14 YYU_01395 IPR018271 Ribosomal protein S14, conserved site YYU_01395 IPR023036 Ribosomal protein S14, bacterial/plastid YYU_01400 IPR000630 Ribosomal protein S8 YYU_01400 IPR035987 YYU_01400 YYU_01405 IPR000702 Ribosomal protein L6 YYU_01405 IPR019906 Ribosomal protein L6, bacterial-type YYU_01405 IPR020040 Ribosomal protein L6, alpha-beta domain YYU_01405 IPR036789 YYU_01405 YYU_01410 IPR004389 Ribosomal protein L18, bacterial-type YYU_01410 IPR005484 Ribosomal protein L18/L5 YYU_01415 IPR005324 Ribosomal protein S5, C-terminal YYU_01415 IPR005712 Ribosomal protein S5, bacterial-type YYU_01415 IPR013810 Ribosomal protein S5, N-terminal YYU_01415 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YYU_01415 IPR020568 Ribosomal protein S5 domain 2-type fold YYU_01420 IPR001196 Ribosomal protein L15, conserved site YYU_01420 IPR005749 Ribosomal protein L15, bacterial-type YYU_01420 IPR021131 Ribosomal protein L18e/L15P YYU_01420 IPR030878 YYU_01420 YYU_01420 IPR036227 YYU_01420 YYU_01425 IPR002208 SecY/SEC61-alpha family YYU_01425 IPR023201 SecY subunit domain YYU_01425 IPR026593 Protein translocase subunit SecY YYU_01425 IPR030659 YYU_01425 YYU_01430 IPR000850 Adenylate kinase/UMP-CMP kinase YYU_01430 IPR006259 Adenylate kinase subfamily YYU_01430 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01430 IPR033690 YYU_01430 YYU_01435 IPR001892 Ribosomal protein S13 YYU_01435 IPR010979 Ribosomal protein S13-like, H2TH YYU_01435 IPR018269 Ribosomal protein S13, conserved site YYU_01435 IPR019980 Ribosomal protein S13, bacterial-type YYU_01435 IPR027437 30s ribosomal protein S13, C-terminal YYU_01440 IPR001971 Ribosomal protein S11 YYU_01440 IPR019981 Ribosomal protein S11, bacterial-type YYU_01440 IPR036967 YYU_01440 YYU_01445 IPR011260 RNA polymerase, alpha subunit, C-terminal YYU_01445 IPR011262 DNA-directed RNA polymerase, insert domain YYU_01445 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type YYU_01445 IPR011773 DNA-directed RNA polymerase, alpha subunit YYU_01445 IPR036603 YYU_01445 YYU_01445 IPR036643 YYU_01445 YYU_01450 IPR000456 Ribosomal protein L17 YYU_01450 IPR036373 YYU_01450 YYU_01455 IPR002547 tRNA-binding domain YYU_01455 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit YYU_01455 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding YYU_01455 IPR005146 B3/B4 tRNA-binding domain YYU_01455 IPR005147 tRNA synthetase, B5-domain YYU_01455 IPR009061 DNA binding domain, putative YYU_01455 IPR012340 Nucleic acid-binding, OB-fold YYU_01455 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 YYU_01455 IPR036690 YYU_01455 YYU_01460 IPR004477 ComEC/Rec2-related protein YYU_01460 IPR025405 Domain of unknown function DUF4131 YYU_01465 IPR001463 Sodium:alanine symporter YYU_01470 IPR000100 Ribonuclease P YYU_01470 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YYU_01470 IPR020539 Ribonuclease P, conserved site YYU_01470 IPR020568 Ribosomal protein S5 domain 2-type fold YYU_01475 IPR000271 Ribosomal protein L34 YYU_01475 IPR020939 Ribosomal protein L34, conserved site YYU_01480 IPR000537 UbiA prenyltransferase family YYU_01480 IPR030470 YYU_01480 YYU_01485 IPR002563 Flavin reductase-like, FMN-binding YYU_01485 IPR012349 FMN-binding split barrel YYU_01495 IPR003439 ABC transporter-like YYU_01495 IPR003593 AAA+ ATPase domain YYU_01495 IPR005670 Phosphate transport system permease protein 1 YYU_01495 IPR017871 ABC transporter, conserved site YYU_01495 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01500 IPR002616 tRNA-guanine(15) transglycosylase-like YYU_01500 IPR004803 Queuine tRNA-ribosyltransferase YYU_01500 IPR036511 YYU_01500 YYU_01505 IPR002677 Ribosomal protein L32p YYU_01505 IPR011332 Zinc-binding ribosomal protein YYU_01510 IPR003664 Fatty acid synthesis PlsX protein YYU_01510 IPR012281 Phospholipid biosynthesis protein, PlsX-like YYU_01515 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 YYU_01515 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal YYU_01515 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YYU_01515 IPR016039 Thiolase-like YYU_01520 IPR002566 Surface antigen msp4 YYU_01530 IPR016192 APOBEC/CMP deaminase, zinc-binding YYU_01530 IPR016193 Cytidine deaminase-like YYU_01530 IPR028883 tRNA-specific adenosine deaminase YYU_01540 IPR007692 DNA helicase, DnaB type YYU_01540 IPR007693 DNA helicase, DnaB-like, N-terminal YYU_01540 IPR007694 DNA helicase, DnaB-like, C-terminal YYU_01540 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YYU_01540 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01540 IPR036185 YYU_01540 YYU_01545 IPR006076 FAD dependent oxidoreductase YYU_01545 IPR036188 YYU_01545 YYU_01550 IPR005475 Transketolase-like, pyrimidine-binding domain YYU_01550 IPR029061 Thiamin diphosphate-binding fold YYU_01565 IPR000092 Polyprenyl synthetase YYU_01565 IPR008949 Terpenoid synthase YYU_01565 IPR033749 YYU_01565 YYU_01575 IPR000788 Ribonucleotide reductase large subunit, C-terminal YYU_01575 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal YYU_01575 IPR013509 Ribonucleotide reductase large subunit, N-terminal YYU_01580 IPR005227 Resolvase, holliday junction-type, YqgF-like YYU_01580 IPR006641 YqgF/RNase H-like domain YYU_01580 IPR012337 Ribonuclease H-like domain YYU_01580 IPR037027 YYU_01580 YYU_01595 IPR001114 Adenylosuccinate synthetase YYU_01595 IPR018220 Adenylosuccinate synthase, active site YYU_01595 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01595 IPR033128 YYU_01595 YYU_01605 IPR006664 Outer membrane protein, bacterial YYU_01605 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal YYU_01605 IPR036737 YYU_01605 YYU_01610 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase YYU_01615 IPR005474 Transketolase, N-terminal YYU_01615 IPR005475 Transketolase-like, pyrimidine-binding domain YYU_01615 IPR005478 Transketolase, bacterial-like YYU_01615 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YYU_01615 IPR020826 Transketolase binding site YYU_01615 IPR029061 Thiamin diphosphate-binding fold YYU_01615 IPR033248 YYU_01615 YYU_01620 IPR007208 Na(+)/H(+) antiporter subunit F-like YYU_01625 IPR005133 Na+/H+ antiporter subunit G YYU_01630 IPR025383 Domain of unknown function DUF4040 YYU_01635 IPR007182 Na+/H+ antiporter MnhB subunit-related protein YYU_01640 IPR039428 YYU_01640 YYU_01645 IPR004659 Ribonuclease E/G YYU_01645 IPR012340 Nucleic acid-binding, OB-fold YYU_01645 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G YYU_01650 IPR012725 Chaperone DnaK YYU_01650 IPR013126 Heat shock protein 70 family YYU_01650 IPR018181 Heat shock protein 70, conserved site YYU_01650 IPR029047 Heat shock protein 70kD, peptide-binding domain YYU_01650 IPR029048 Heat shock protein 70kD, C-terminal domain YYU_01655 IPR005031 Streptomyces cyclase/dehydrase YYU_01655 IPR023393 START-like domain YYU_01660 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YYU_01665 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YYU_01665 IPR003593 AAA+ ATPase domain YYU_01665 IPR004125 Signal recognition particle, SRP54 subunit, M-domain YYU_01665 IPR004780 Signal recognition particle protein Ffh YYU_01665 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle YYU_01665 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01665 IPR036225 YYU_01665 YYU_01665 IPR036891 YYU_01665 YYU_01670 IPR004044 K Homology domain, type 2 YYU_01670 IPR005225 Small GTP-binding protein domain YYU_01670 IPR005662 GTP-binding protein Era YYU_01670 IPR006073 GTP binding domain YYU_01670 IPR009019 K homology domain, prokaryotic type YYU_01670 IPR015946 K homology domain-like, alpha/beta YYU_01670 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01675 IPR012337 Ribonuclease H-like domain YYU_01675 IPR019288 Predicted 3'-5' exonuclease, PolB-like YYU_01675 IPR036397 YYU_01675 YYU_01690 IPR001969 Aspartic peptidase, active site YYU_01690 IPR011969 Peptidase aspartic, CHP02281 YYU_01690 IPR021109 Aspartic peptidase domain YYU_01695 IPR000587 Creatinase, N-terminal YYU_01695 IPR000994 Peptidase M24, structural domain YYU_01695 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal YYU_01695 IPR032416 YYU_01695 YYU_01695 IPR036005 YYU_01695 YYU_01700 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase YYU_01700 IPR036108 YYU_01700 YYU_01705 IPR011697 Peptidase C26 YYU_01705 IPR029062 Class I glutamine amidotransferase-like YYU_01710 IPR001650 Helicase, C-terminal YYU_01710 IPR005259 Primosomal protein n YYU_01710 IPR011545 DEAD/DEAH box helicase domain YYU_01710 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YYU_01710 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01720 IPR001383 Ribosomal protein L28 YYU_01720 IPR026569 Ribosomal protein L28/L24 YYU_01720 IPR034704 YYU_01720 YYU_01720 IPR037147 YYU_01720 YYU_01735 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YYU_01735 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YYU_01735 IPR006225 Pseudouridine synthase, RluC/RluD YYU_01735 IPR020103 Pseudouridine synthase, catalytic domain YYU_01735 IPR036986 YYU_01735 YYU_01745 IPR000089 Biotin/lipoyl attachment YYU_01745 IPR001882 Biotin-binding site YYU_01745 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain YYU_01745 IPR005481 Carbamoyl-phosphate synthase, large subunit, N-terminal YYU_01745 IPR005482 Biotin carboxylase, C-terminal YYU_01745 IPR011053 Single hybrid motif YYU_01745 IPR011054 Rudiment single hybrid motif YYU_01745 IPR016185 Pre-ATP-grasp domain YYU_01760 IPR003698 Lipoyl synthase YYU_01760 IPR006638 Elongator protein 3/MiaB/NifB YYU_01760 IPR007197 Radical SAM YYU_01760 IPR013785 Aldolase-type TIM barrel YYU_01780 IPR000515 MetI-like domain YYU_01780 IPR005672 Phosphate transport system permease protein PstA YYU_01780 IPR024573 Domain of unknown function DUF3333 YYU_01780 IPR035906 YYU_01780 YYU_01785 IPR001189 Manganese/iron superoxide dismutase YYU_01785 IPR019831 Manganese/iron superoxide dismutase, N-terminal YYU_01785 IPR019832 Manganese/iron superoxide dismutase, C-terminal YYU_01785 IPR019833 Manganese/iron superoxide dismutase, binding site YYU_01785 IPR036314 YYU_01785 YYU_01785 IPR036324 YYU_01785 YYU_01790 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB YYU_01795 IPR003593 AAA+ ATPase domain YYU_01795 IPR004346 CagE, TrbE, VirB component of type IV transporter system YYU_01795 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain YYU_01795 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01800 IPR007688 Conjugal transfer, TrbL/VirB6 YYU_01805 IPR007688 Conjugal transfer, TrbL/VirB6 YYU_01810 IPR007688 Conjugal transfer, TrbL/VirB6 YYU_01815 IPR007688 Conjugal transfer, TrbL/VirB6 YYU_01820 IPR011740 Protein of unknown function DUF2460 YYU_01825 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase YYU_01825 IPR029054 dUTPase-like YYU_01825 IPR036157 YYU_01825 YYU_01830 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YYU_01840 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain YYU_01840 IPR006274 Carbamoyl-phosphate synthase, small subunit YYU_01840 IPR017926 Glutamine amidotransferase YYU_01840 IPR029062 Class I glutamine amidotransferase-like YYU_01840 IPR036480 YYU_01840 YYU_01880 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent YYU_01880 IPR006124 Metalloenzyme YYU_01880 IPR011258 BPG-independent PGAM, N-terminal YYU_01880 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YYU_01880 IPR017850 Alkaline-phosphatase-like, core domain YYU_01880 IPR036646 YYU_01880 YYU_01885 IPR005225 Small GTP-binding protein domain YYU_01885 IPR006073 GTP binding domain YYU_01885 IPR015946 K homology domain-like, alpha/beta YYU_01885 IPR016484 GTP-binding protein EngA YYU_01885 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_01885 IPR032859 YYU_01885 YYU_01895 IPR002372 Pyrrolo-quinoline quinone repeat YYU_01895 IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily YYU_01895 IPR015943 WD40/YVTN repeat-like-containing domain YYU_01895 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat YYU_01900 IPR001100 YYU_01900 YYU_01900 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYU_01900 IPR006258 Dihydrolipoamide dehydrogenase YYU_01900 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YYU_01900 IPR016156 FAD/NAD-linked reductase, dimerisation domain YYU_01900 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YYU_01900 IPR036188 YYU_01900 YYU_01905 IPR006143 RND efflux pump, membrane fusion protein YYU_01905 IPR032317 YYU_01905 YYU_01910 IPR004368 Translation initiation factor IF-1 YYU_01910 IPR006196 RNA-binding domain, S1, IF1 type YYU_01910 IPR012340 Nucleic acid-binding, OB-fold YYU_01915 IPR003697 Maf-like protein YYU_01915 IPR029001 Inosine triphosphate pyrophosphatase-like YYU_01920 IPR001865 Ribosomal protein S2 YYU_01920 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid YYU_01920 IPR018130 Ribosomal protein S2, conserved site YYU_01920 IPR023591 Ribosomal protein S2, flavodoxin-like domain YYU_01925 IPR001816 Translation elongation factor EFTs/EF1B YYU_01925 IPR009060 UBA-like YYU_01925 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation YYU_01925 IPR018101 Translation elongation factor Ts, conserved site YYU_01925 IPR036402 YYU_01925 YYU_01940 IPR001626 ABC-3 YYU_01940 IPR037294 YYU_01940 YYU_01950 IPR005805 Rieske iron-sulphur protein, C-terminal YYU_01950 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit YYU_01950 IPR017941 Rieske [2Fe-2S] iron-sulphur domain YYU_01950 IPR036922 YYU_01950 YYU_01955 IPR005797 Cytochrome b/b6, N-terminal YYU_01955 IPR005798 Cytochrome b/b6, C-terminal YYU_01955 IPR016174 Di-haem cytochrome, transmembrane YYU_01955 IPR027387 Cytochrome b/b6-like domain YYU_01955 IPR030689 YYU_01955 YYU_01955 IPR036150 YYU_01955 YYU_01960 IPR002326 Cytochrome c1 YYU_01960 IPR036909 YYU_01960 YYU_01995 IPR000924 Glutamyl/glutaminyl-tRNA synthetase YYU_01995 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YYU_01995 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial YYU_01995 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding YYU_01995 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_01995 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain YYU_01995 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 YYU_02005 IPR010663 Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase YYU_02005 IPR010979 Ribosomal protein S13-like, H2TH YYU_02005 IPR012319 DNA glycosylase/AP lyase, catalytic domain YYU_02005 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding YYU_02005 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site YYU_02005 IPR020629 Formamidopyrimidine-DNA glycosylase YYU_02005 IPR035937 YYU_02005 YYU_02010 IPR002218 Glucose-inhibited division protein A-related YYU_02010 IPR020595 Glucose-inhibited division protein A-related, conserved site YYU_02010 IPR026904 GidA associated domain 3 YYU_02010 IPR036188 YYU_02010 YYU_02025 IPR029045 ClpP/crotonase-like domain YYU_02025 IPR034733 YYU_02025 YYU_02035 IPR003593 AAA+ ATPase domain YYU_02035 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_02040 IPR000352 Peptide chain release factor class I/class II YYU_02040 IPR004373 Peptide chain release factor 1 YYU_02040 IPR005139 Peptide chain release factor YYU_02050 IPR006073 GTP binding domain YYU_02050 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC YYU_02050 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_02055 IPR001048 Aspartate/glutamate/uridylate kinase YYU_02055 IPR004662 Acetylglutamate kinase YYU_02055 IPR036393 YYU_02055 YYU_02060 IPR001260 Coproporphyrinogen III oxidase, aerobic YYU_02060 IPR036406 YYU_02060 YYU_02065 IPR001991 Sodium:dicarboxylate symporter YYU_02065 IPR036458 YYU_02065 YYU_02075 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain YYU_02075 IPR002317 Serine-tRNA ligase, type1 YYU_02075 IPR010978 tRNA-binding arm YYU_02075 IPR015866 Serine-tRNA synthetase, type1, N-terminal YYU_02080 IPR003798 DNA recombination RmuC YYU_02085 IPR007430 Bacterial virulence protein VirB8 YYU_02085 IPR032710 YYU_02085 YYU_02090 IPR018022 tRNA delta(2)-isopentenylpyrophosphate transferase YYU_02090 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_02100 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like YYU_02100 IPR013328 Dehydrogenase, multihelical YYU_02105 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site YYU_02105 IPR011537 NADH ubiquinone oxidoreductase, F subunit YYU_02105 IPR011538 NADH:ubiquinone oxidoreductase, 51kDa subunit YYU_02105 IPR019554 Soluble ligand binding domain YYU_02105 IPR019575 NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YYU_02105 IPR037207 YYU_02105 YYU_02105 IPR037225 YYU_02105 YYU_02120 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 YYU_02125 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K YYU_02125 IPR039428 YYU_02125 YYU_02130 IPR001516 NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YYU_02130 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YYU_02130 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 YYU_02130 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup YYU_02135 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YYU_02135 IPR003918 NADH:ubiquinone oxidoreductase YYU_02135 IPR010227 NADH-quinone oxidoreductase, chain M/4 YYU_02140 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase YYU_02140 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 YYU_02145 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase YYU_02145 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal YYU_02145 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal YYU_02145 IPR026877 DXP reductoisomerase C-terminal domain YYU_02145 IPR036169 YYU_02145 YYU_02145 IPR036291 YYU_02145 YYU_02155 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YYU_02155 IPR011005 Dihydropteroate synthase-like YYU_02155 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial YYU_02160 IPR002033 Sec-independent periplasmic protein translocase TatC YYU_02160 IPR019820 Sec-independent periplasmic protein translocase, conserved site YYU_02165 IPR001036 Acriflavin resistance protein YYU_02165 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains YYU_02170 IPR004087 K Homology domain YYU_02170 IPR009019 K homology domain, prokaryotic type YYU_02170 IPR010213 Transcription termination factor NusA YYU_02170 IPR010214 Transcription termination factor NusA, C-terminal duplication YYU_02170 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical YYU_02170 IPR012340 Nucleic acid-binding, OB-fold YYU_02170 IPR013735 Transcription factor NusA, N-terminal YYU_02170 IPR015946 K homology domain-like, alpha/beta YYU_02170 IPR022967 RNA-binding domain, S1 YYU_02170 IPR025249 KH domain, NusA-like YYU_02170 IPR030842 YYU_02170 YYU_02170 IPR036555 YYU_02170 YYU_02175 IPR000178 Translation initiation factor aIF-2, bacterial-like YYU_02175 IPR000795 Elongation factor, GTP-binding domain YYU_02175 IPR005225 Small GTP-binding protein domain YYU_02175 IPR006847 Translation initiation factor IF-2, N-terminal YYU_02175 IPR009000 Translation protein, beta-barrel domain YYU_02175 IPR023115 Translation initiation factor IF- 2, domain 3 YYU_02175 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_02175 IPR036925 YYU_02175 YYU_02180 IPR000238 Ribosome-binding factor A YYU_02180 IPR015946 K homology domain-like, alpha/beta YYU_02180 IPR020053 Ribosome-binding factor A, conserved site YYU_02180 IPR023799 Ribosome-binding factor A domain YYU_02185 IPR009000 Translation protein, beta-barrel domain YYU_02190 IPR005496 Integral membrane protein TerC YYU_02195 IPR001270 ClpA/B family YYU_02195 IPR003593 AAA+ ATPase domain YYU_02195 IPR003959 ATPase, AAA-type, core YYU_02195 IPR018368 ClpA/B, conserved site 1 YYU_02195 IPR019489 Clp ATPase, C-terminal YYU_02195 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_02195 IPR028299 ClpA/B, conserved site 2 YYU_02195 IPR036628 YYU_02195 YYU_02200 IPR000640 Translation elongation factor EFG, V domain YYU_02200 IPR000795 Elongation factor, GTP-binding domain YYU_02200 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YYU_02200 IPR005225 Small GTP-binding protein domain YYU_02200 IPR006298 GTP-binding protein TypA YYU_02200 IPR009000 Translation protein, beta-barrel domain YYU_02200 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_02200 IPR031157 YYU_02200 YYU_02200 IPR035647 YYU_02200 YYU_02260 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related YYU_02260 IPR018027 Asn/Gln amidotransferase YYU_02260 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal YYU_02275 IPR003849 Preprotein translocase YajC YYU_02285 IPR000424 Primosome PriB/single-strand DNA-binding YYU_02285 IPR011344 Single-stranded DNA-binding protein YYU_02285 IPR012340 Nucleic acid-binding, OB-fold YYU_02290 IPR000352 Peptide chain release factor class I/class II YYU_02290 IPR005139 Peptide chain release factor YYU_02295 IPR007956 Malonyl-CoA decarboxylase YYU_02295 IPR035372 YYU_02295 YYU_02295 IPR038351 YYU_02295 YYU_02300 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related YYU_02300 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit YYU_02300 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic YYU_02300 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YYU_02300 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site YYU_02300 IPR018027 Asn/Gln amidotransferase YYU_02300 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal YYU_02305 IPR004808 AP endonuclease 1 YYU_02305 IPR005135 Endonuclease/exonuclease/phosphatase YYU_02305 IPR036691 YYU_02305 YYU_02315 IPR002347 Glucose/ribitol dehydrogenase YYU_02315 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) YYU_02315 IPR036291 YYU_02315 YYU_02320 IPR001957 Chromosomal replication control, initiator DnaA YYU_02320 IPR003593 AAA+ ATPase domain YYU_02320 IPR010921 Trp repressor/replication initiator YYU_02320 IPR013159 Chromosomal replication initiator, DnaA C-terminal YYU_02320 IPR013317 Chromosomal replication control, initiator (DnaA)/regulator (Hda) YYU_02320 IPR018312 Chromosomal replication control, initiator DnaA, conserved site YYU_02320 IPR020591 Chromosomal replication control, initiator DnaA-like YYU_02320 IPR024633 DnaA N-terminal domain YYU_02320 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_02320 IPR038454 YYU_02320 YYU_02345 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related YYU_02345 IPR018027 Asn/Gln amidotransferase YYU_02345 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal YYU_02355 IPR000352 Peptide chain release factor class I/class II YYU_02355 IPR004374 Peptide chain release factor 2 YYU_02355 IPR005139 Peptide chain release factor YYU_02360 IPR002876 Transcriptional regulator TACO1-like YYU_02360 IPR017856 Integrase, N-terminal zinc-binding domain-like YYU_02360 IPR026564 Transcriptional regulator TACO1-like, domain 3 YYU_02360 IPR029072 YebC-like YYU_02365 IPR017039 Virulence factor BrkB YYU_02370 IPR005814 Aminotransferase class-III YYU_02370 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA YYU_02370 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YYU_02370 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YYU_02370 IPR015424 Pyridoxal phosphate-dependent transferase YYU_02405 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_02410 IPR001585 Transaldolase YYU_02410 IPR004731 Transaldolase 3A/3B YYU_02410 IPR013785 Aldolase-type TIM barrel YYU_02410 IPR018225 Transaldolase, active site YYU_02415 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal YYU_02415 IPR036771 YYU_02415 YYU_02420 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YYU_02420 IPR003593 AAA+ ATPase domain YYU_02420 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain YYU_02420 IPR005722 ATPase, F1 complex, beta subunit YYU_02420 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YYU_02420 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal YYU_02420 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_02420 IPR036121 YYU_02420 YYU_02430 IPR000644 CBS domain YYU_02430 IPR006667 SLC41 divalent cation transporters, integral membrane domain YYU_02430 IPR006668 Magnesium transporter, MgtE intracellular domain YYU_02430 IPR006669 Magnesium transporter MgtE YYU_02430 IPR036739 YYU_02430 YYU_02430 IPR038048 YYU_02430 YYU_02430 IPR038076 YYU_02430 YYU_02440 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YYU_02440 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_02450 IPR001406 Pseudouridine synthase I, TruA YYU_02450 IPR020095 Pseudouridine synthase I, TruA, C-terminal YYU_02450 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain YYU_02450 IPR020103 Pseudouridine synthase, catalytic domain YYU_02455 IPR002082 Aspartate carbamoyltransferase YYU_02455 IPR006130 Aspartate/ornithine carbamoyltransferase YYU_02455 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YYU_02455 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YYU_02455 IPR036901 YYU_02455 YYU_02460 IPR002877 Ribosomal RNA methyltransferase FtsJ domain YYU_02460 IPR015507 Ribosomal RNA large subunit methyltransferase E YYU_02460 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_02465 IPR004808 AP endonuclease 1 YYU_02465 IPR005135 Endonuclease/exonuclease/phosphatase YYU_02465 IPR036691 YYU_02465 YYU_02475 IPR000473 Ribosomal protein L36 YYU_02475 IPR035977 YYU_02475 YYU_02485 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit YYU_02485 IPR037232 YYU_02485 YYU_02490 IPR002625 Smr protein/MutS2 C-terminal YYU_02490 IPR036063 YYU_02490 YYU_02495 IPR003716 DNA-directed RNA polymerase, omega subunit YYU_02495 IPR006110 RNA polymerase, subunit omega/K/RPB6 YYU_02495 IPR012293 RNA polymerase subunit, RPB6/omega YYU_02495 IPR036161 YYU_02495 YYU_02500 IPR010982 Lambda repressor-like, DNA-binding domain YYU_02500 IPR039554 YYU_02500 YYU_02510 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YYU_02510 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid YYU_02510 IPR038430 YYU_02510 YYU_02515 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit YYU_02515 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit YYU_02520 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit YYU_02520 IPR010218 NADH dehydrogenase, subunit C YYU_02520 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site YYU_02520 IPR037232 YYU_02520 YYU_02530 IPR002828 Survival protein SurE-like phosphatase/nucleotidase YYU_02530 IPR030048 YYU_02530 YYU_02530 IPR036523 YYU_02530 YYU_02540 IPR004329 CcmE/CycJ protein YYU_02540 IPR036127 YYU_02540 YYU_02545 IPR001754 Orotidine 5'-phosphate decarboxylase domain YYU_02545 IPR011060 Ribulose-phosphate binding barrel YYU_02545 IPR013785 Aldolase-type TIM barrel YYU_02545 IPR014732 Orotidine 5'-phosphate decarboxylase YYU_02545 IPR018089 Orotidine 5'-phosphate decarboxylase, active site YYU_02550 IPR001130 TatD family YYU_02550 IPR015991 Uncharacterised deoxyribonuclease TatD-type YYU_02550 IPR018228 Deoxyribonuclease, TatD-related, conserved site YYU_02550 IPR032466 YYU_02550 YYU_02560 IPR001130 TatD family YYU_02560 IPR032466 YYU_02560 YYU_02570 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YYU_02570 IPR002300 Aminoacyl-tRNA synthetase, class Ia YYU_02570 IPR002302 Leucine-tRNA ligase YYU_02570 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YYU_02570 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YYU_02570 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YYU_02570 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_02570 IPR015413 Methionyl/Leucyl tRNA synthetase YYU_02570 IPR025709 Leucyl-tRNA synthetase, editing domain YYU_02595 IPR004602 UvrABC system subunit A YYU_02595 IPR017871 ABC transporter, conserved site YYU_02595 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_02600 IPR006027 NusB/RsmB/TIM44 YYU_02600 IPR011605 NusB antitermination factor YYU_02600 IPR035926 YYU_02600 YYU_02605 IPR002180 6,7-dimethyl-8-ribityllumazine synthase YYU_02605 IPR034964 YYU_02605 YYU_02605 IPR036467 YYU_02605 YYU_02610 IPR001708 Membrane insertase OXA1/ALB3/YidC YYU_02610 IPR019998 Membrane insertase YidC YYU_02610 IPR028053 Membrane insertase YidC, N-terminal YYU_02610 IPR028055 Membrane insertase YidC/Oxa1, C-terminal YYU_02610 IPR038210 YYU_02610 YYU_02610 IPR038221 YYU_02610 YYU_02615 IPR001708 Membrane insertase OXA1/ALB3/YidC YYU_02615 IPR038210 YYU_02615 YYU_02620 IPR006656 Molybdopterin oxidoreductase YYU_02625 IPR000462 CDP-alcohol phosphatidyltransferase YYU_02625 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase YYU_02625 IPR012616 CDP-alcohol phosphatidyltransferase, C-terminal YYU_02630 IPR003817 Phosphatidylserine decarboxylase-related YYU_02630 IPR033175 YYU_02630 YYU_02635 IPR017938 Riboflavin synthase-like beta-barrel YYU_02635 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YYU_02635 IPR036188 YYU_02635 YYU_02635 IPR039261 YYU_02635 YYU_02645 IPR001059 Translation elongation factor P/YeiP, central YYU_02645 IPR008991 Translation protein SH3-like domain YYU_02645 IPR011768 Translation elongation factor P YYU_02645 IPR012340 Nucleic acid-binding, OB-fold YYU_02645 IPR013185 Translation elongation factor, KOW-like YYU_02645 IPR013852 Translation elongation factor P/YeiP, conserved site YYU_02645 IPR014722 Ribosomal protein L2 domain 2 YYU_02645 IPR015365 Elongation factor P, C-terminal YYU_02645 IPR020599 Translation elongation factor P/YeiP YYU_02650 IPR000760 Inositol monophosphatase YYU_02655 IPR002942 RNA-binding S4 domain YYU_02655 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F YYU_02655 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site YYU_02655 IPR020103 Pseudouridine synthase, catalytic domain YYU_02655 IPR036986 YYU_02655 YYU_02660 IPR000160 GGDEF domain YYU_02660 IPR001789 Signal transduction response regulator, receiver domain YYU_02660 IPR011006 CheY-like superfamily YYU_02660 IPR029787 Nucleotide cyclase YYU_02665 IPR003369 Sec-independent protein translocase protein TatA/B/E YYU_02670 IPR007780 Bacterial NAD-glutamate dehydrogenase YYU_02670 IPR028971 NAD-glutamate dehydrogenase YYU_02670 IPR036291 YYU_02670 YYU_02680 IPR010331 Exopolysaccharide synthesis, ExoD YYU_02685 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YYU_02685 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_02685 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR YYU_02685 IPR015803 Cysteine-tRNA ligase YYU_02685 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase YYU_02685 IPR032678 YYU_02685 YYU_02695 IPR000358 Ribonucleotide reductase small subunit YYU_02695 IPR009078 Ferritin-like superfamily YYU_02695 IPR012348 Ribonucleotide reductase-related YYU_02700 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YYU_02700 IPR036249 YYU_02700 YYU_02705 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_02710 IPR021277 Protein of unknown function DUF2610 YYU_02715 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA YYU_02715 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_02715 IPR038375 YYU_02715 YYU_02740 IPR002694 Zinc finger, CHC2-type YYU_02740 IPR006171 Toprim domain YYU_02740 IPR006295 DNA primase, DnaG YYU_02740 IPR013264 DNA primase, catalytic core, N-terminal YYU_02740 IPR030846 YYU_02740 YYU_02740 IPR036977 YYU_02740 YYU_02740 IPR037068 YYU_02740 YYU_02745 IPR000432 DNA mismatch repair protein MutS, C-terminal YYU_02745 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_02755 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YYU_02755 IPR006204 GHMP kinase N-terminal domain YYU_02755 IPR013750 GHMP kinase, C-terminal domain YYU_02755 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YYU_02755 IPR020568 Ribosomal protein S5 domain 2-type fold YYU_02755 IPR036554 YYU_02755 YYU_02760 IPR001269 tRNA-dihydrouridine synthase YYU_02760 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 YYU_02760 IPR013785 Aldolase-type TIM barrel YYU_02760 IPR018517 tRNA-dihydrouridine synthase, conserved site YYU_02760 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal YYU_02765 IPR000943 RNA polymerase sigma-70 YYU_02765 IPR007127 RNA polymerase sigma factor 70, region 1.1 YYU_02765 IPR007624 RNA polymerase sigma-70 region 3 YYU_02765 IPR007627 RNA polymerase sigma-70 region 2 YYU_02765 IPR007630 RNA polymerase sigma-70 region 4 YYU_02765 IPR007631 RNA polymerase sigma factor 70, non-essential domain YYU_02765 IPR009042 RNA polymerase sigma-70 region 1.2 YYU_02765 IPR012760 RNA polymerase sigma factor RpoD, C-terminal YYU_02765 IPR013324 RNA polymerase sigma factor, region 3/4 YYU_02765 IPR013325 RNA polymerase sigma factor, region 2 YYU_02765 IPR014284 RNA polymerase sigma-70 like domain YYU_02765 IPR028630 RNA polymerase sigma factor RpoD YYU_02765 IPR036388 YYU_02765 YYU_02780 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YYU_02780 IPR011765 Peptidase M16, N-terminal YYU_02785 IPR004323 Divalent ion tolerance protein, CutA YYU_02785 IPR011322 Nitrogen regulatory PII-like, alpha/beta YYU_02785 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal YYU_02790 IPR001789 Signal transduction response regulator, receiver domain YYU_02790 IPR003594 Histidine kinase-like ATPase, C-terminal domain YYU_02790 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YYU_02790 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YYU_02790 IPR011006 CheY-like superfamily YYU_02790 IPR036097 YYU_02790 YYU_02790 IPR036890 YYU_02790 YYU_02795 IPR002935 O-methyltransferase, family 3 YYU_02795 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_02810 IPR025747 ThiC-associated domain YYU_02815 IPR000631 YjeF C-terminal domain YYU_02815 IPR004443 YjeF N-terminal domain YYU_02815 IPR029056 Ribokinase-like YYU_02815 IPR030677 YYU_02815 YYU_02815 IPR036652 YYU_02815 YYU_02830 IPR036458 YYU_02830 YYU_02845 IPR003601 DNA topoisomerase, type IA, domain 2 YYU_02845 IPR003602 DNA topoisomerase, type IA, DNA-binding domain YYU_02845 IPR005733 DNA topoisomerase I, bacterial-type YYU_02845 IPR006171 Toprim domain YYU_02845 IPR013497 DNA topoisomerase, type IA, central YYU_02845 IPR013498 DNA topoisomerase, type IA, zn finger YYU_02845 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 YYU_02845 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 YYU_02845 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 YYU_02845 IPR023405 DNA topoisomerase, type IA, core domain YYU_02845 IPR023406 DNA topoisomerase, type IA, active site YYU_02845 IPR025589 Topoisomerase C-terminal repeat YYU_02845 IPR028612 DNA topoisomerase I, type IA YYU_02850 IPR002817 Thiamine biosynthesis protein ThiC YYU_02850 IPR025747 ThiC-associated domain YYU_02850 IPR037509 YYU_02850 YYU_02850 IPR038521 YYU_02850 YYU_02880 IPR010233 Ubiquinone biosynthesis O-methyltransferase YYU_02880 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_02885 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YYU_02885 IPR002904 Lysine-tRNA ligase YYU_02885 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding YYU_02885 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_02885 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 YYU_02885 IPR023386 Lysine-tRNA ligase, insertion domain YYU_02895 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type YYU_02895 IPR027304 Trigger factor/SurA domain YYU_02905 IPR000905 Gcp-like domain YYU_02905 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ YYU_02910 IPR001991 Sodium:dicarboxylate symporter YYU_02910 IPR036458 YYU_02910 YYU_02915 IPR001991 Sodium:dicarboxylate symporter YYU_02915 IPR036458 YYU_02915 YYU_02925 IPR007221 Rod shape-determining protein MreC YYU_02945 IPR007922 Protein of unknown function DUF721/UPF0232 YYU_02955 IPR001737 Ribosomal RNA adenine methylase transferase YYU_02955 IPR011530 Ribosomal RNA adenine dimethylase YYU_02955 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site YYU_02955 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal YYU_02955 IPR023165 rRNA adenine dimethylase-like YYU_02955 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_02965 IPR000652 Triosephosphate isomerase YYU_02965 IPR013785 Aldolase-type TIM barrel YYU_02965 IPR035990 YYU_02965 YYU_02970 IPR011852 TRAP transporter solute receptor, TAXI family YYU_02975 IPR000905 Gcp-like domain YYU_02975 IPR017861 Kae1/YgjD family YYU_02975 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD YYU_02980 IPR010432 RDD YYU_02985 IPR006157 Dihydroneopterin aldolase/epimerase domain YYU_02990 IPR001236 Lactate/malate dehydrogenase, N-terminal YYU_02990 IPR001557 L-lactate/malate dehydrogenase YYU_02990 IPR011275 Malate dehydrogenase, type 3 YYU_02990 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal YYU_02990 IPR022383 Lactate/malate dehydrogenase, C-terminal YYU_02990 IPR036291 YYU_02990 YYU_03010 IPR011738 Phage conserved hypothetical protein YYU_03010 IPR021146 Phage gp6-like head-tail connector protein YYU_03020 IPR011855 Phage major tail protein TP901-1 YYU_03055 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family YYU_03055 IPR004785 Ribose 5-phosphate isomerase B YYU_03055 IPR036569 YYU_03055 YYU_03065 IPR004753 Cell shape determining protein MreB/Mrl YYU_03070 IPR002582 Holo-[acyl carrier protein] synthase YYU_03070 IPR004568 Phosphopantethiene-protein transferase domain YYU_03070 IPR008278 4'-phosphopantetheinyl transferase superfamily YYU_03070 IPR037143 YYU_03070 YYU_03075 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain YYU_03075 IPR002316 Proline-tRNA ligase, class IIa YYU_03075 IPR004154 Anticodon-binding YYU_03075 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type YYU_03075 IPR023716 Proline-tRNA ligase, class IIa, type 2 YYU_03075 IPR036621 YYU_03075 YYU_03080 IPR029062 Class I glutamine amidotransferase-like YYU_03090 IPR001980 Coenzyme A biosynthesis protein YYU_03090 IPR004821 Cytidyltransferase-like domain YYU_03090 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_03095 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_03130 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II YYU_03130 IPR005982 Thioredoxin reductase YYU_03130 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site YYU_03130 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YYU_03130 IPR036188 YYU_03130 YYU_03135 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YYU_03135 IPR019479 Peroxiredoxin, C-terminal YYU_03135 IPR024706 Peroxiredoxin, AhpC-type YYU_03135 IPR036249 YYU_03135 YYU_03140 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site YYU_03140 IPR004839 Aminotransferase, class I/classII YYU_03140 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YYU_03140 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YYU_03140 IPR015424 Pyridoxal phosphate-dependent transferase YYU_03145 IPR002566 Surface antigen msp4 YYU_03145 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_03150 IPR002566 Surface antigen msp4 YYU_03150 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_03155 IPR002566 Surface antigen msp4 YYU_03155 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_03170 IPR002347 Glucose/ribitol dehydrogenase YYU_03170 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase YYU_03170 IPR020904 Short-chain dehydrogenase/reductase, conserved site YYU_03170 IPR036291 YYU_03170 YYU_03175 IPR002872 Proline dehydrogenase domain YYU_03175 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 YYU_03175 IPR015590 Aldehyde dehydrogenase domain YYU_03175 IPR016160 Aldehyde dehydrogenase, cysteine active site YYU_03175 IPR016161 Aldehyde/histidinol dehydrogenase YYU_03175 IPR016162 Aldehyde dehydrogenase, N-terminal YYU_03175 IPR016163 Aldehyde dehydrogenase, C-terminal YYU_03175 IPR024082 Proline dehydrogenase PutA, domain II YYU_03175 IPR024089 Proline dehydrogenase PutA, domain I/II YYU_03175 IPR025703 Bifunctional protein PutA YYU_03175 IPR029041 FAD-linked oxidoreductase-like YYU_03185 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain YYU_03185 IPR029058 Alpha/Beta hydrolase fold YYU_03190 IPR000192 Aminotransferase class V domain YYU_03190 IPR000944 Transcription regulator Rrf2-like YYU_03190 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YYU_03190 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YYU_03190 IPR015424 Pyridoxal phosphate-dependent transferase YYU_03190 IPR036388 YYU_03190 YYU_03190 IPR036390 YYU_03190 YYU_03195 IPR000192 Aminotransferase class V domain YYU_03195 IPR010240 Cysteine desulfurase YYU_03195 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YYU_03195 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YYU_03195 IPR015424 Pyridoxal phosphate-dependent transferase YYU_03195 IPR016454 Cysteine desulfurase, NifS YYU_03195 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site YYU_03200 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal YYU_03200 IPR011339 ISC system FeS cluster assembly, IscU scaffold YYU_03205 IPR000361 FeS cluster biogenesis YYU_03205 IPR016092 FeS cluster insertion protein YYU_03205 IPR017870 FeS cluster insertion, C-terminal, conserved site YYU_03205 IPR035903 YYU_03205 YYU_03210 IPR004640 Co-chaperone Hsc20 YYU_03210 IPR036869 YYU_03210 YYU_03215 IPR013126 Heat shock protein 70 family YYU_03215 IPR018181 Heat shock protein 70, conserved site YYU_03215 IPR029047 Heat shock protein 70kD, peptide-binding domain YYU_03220 IPR001041 2Fe-2S ferredoxin-type domain YYU_03220 IPR001055 Adrenodoxin YYU_03220 IPR012675 Beta-grasp domain YYU_03220 IPR018298 Adrenodoxin, iron-sulphur binding site YYU_03220 IPR036010 YYU_03220 YYU_03240 IPR017853 Glycoside hydrolase, superfamily YYU_03240 IPR025195 GTA TIM-barrel-like domain YYU_03240 IPR032876 YYU_03240 YYU_03255 IPR005616 Cytochrome C biogenesis protein CcmH YYU_03255 IPR038297 YYU_03255 YYU_03260 IPR011928 Bacteriophage phiJL001, Gp84 YYU_03260 IPR018964 Bacteriophage phiJL001, Gp84, C-terminal YYU_03260 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal YYU_03275 IPR002903 Ribosomal RNA small subunit methyltransferase H YYU_03275 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain YYU_03275 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_03290 IPR002698 5-formyltetrahydrofolate cyclo-ligase YYU_03290 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain YYU_03290 IPR037171 YYU_03290 YYU_03295 IPR005225 Small GTP-binding protein domain YYU_03295 IPR006073 GTP binding domain YYU_03295 IPR006074 GTP1/OBG, conserved site YYU_03295 IPR006169 GTP1/OBG domain YYU_03295 IPR014100 GTP-binding protein Obg/CgtA YYU_03295 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_03295 IPR035101 YYU_03295 YYU_03295 IPR036726 YYU_03295 YYU_03300 IPR000941 Enolase YYU_03300 IPR020809 Enolase, conserved site YYU_03300 IPR020810 Enolase, C-terminal YYU_03300 IPR020811 Enolase, N-terminal YYU_03300 IPR029017 Enolase N-terminal domain-like YYU_03300 IPR036849 YYU_03300 YYU_03310 IPR001787 Ribosomal protein L21 YYU_03310 IPR018258 Ribosomal protein L21, conserved site YYU_03310 IPR028909 Ribosomal protein L21-like YYU_03310 IPR036164 YYU_03310 YYU_03315 IPR001684 Ribosomal protein L27 YYU_03315 IPR018261 Ribosomal protein L27, conserved site YYU_03325 IPR001278 Arginine-tRNA ligase YYU_03325 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YYU_03325 IPR005148 Arginyl tRNA synthetase N-terminal domain YYU_03325 IPR008909 DALR anticodon binding YYU_03325 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YYU_03325 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_03325 IPR035684 YYU_03325 YYU_03325 IPR036695 YYU_03325 YYU_03335 IPR002510 TldD/PmbA YYU_03335 IPR035068 YYU_03335 YYU_03335 IPR036059 YYU_03335 YYU_03340 IPR001474 GTP cyclohydrolase I YYU_03340 IPR018234 GTP cyclohydrolase I, conserved site YYU_03340 IPR020602 GTP cyclohydrolase I domain YYU_03345 IPR000131 ATPase, F1 complex, gamma subunit YYU_03345 IPR035968 YYU_03345 YYU_03355 IPR002110 Ankyrin repeat YYU_03355 IPR036770 YYU_03355 YYU_03360 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YYU_03360 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site YYU_03365 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site YYU_03365 IPR006656 Molybdopterin oxidoreductase YYU_03365 IPR010228 NADH:ubiquinone oxidoreductase, subunit G YYU_03365 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal YYU_03365 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding YYU_03365 IPR036010 YYU_03365 YYU_03380 IPR000565 DNA topoisomerase, type IIA, subunit B YYU_03380 IPR001241 DNA topoisomerase, type IIA YYU_03380 IPR002288 DNA gyrase B subunit, C-terminal YYU_03380 IPR003594 Histidine kinase-like ATPase, C-terminal domain YYU_03380 IPR006171 Toprim domain YYU_03380 IPR011557 DNA gyrase, subunit B YYU_03380 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 YYU_03380 IPR013759 DNA topoisomerase, type IIA, central domain YYU_03380 IPR013760 DNA topoisomerase, type IIA-like domain YYU_03380 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YYU_03380 IPR018522 DNA topoisomerase, type IIA, conserved site YYU_03380 IPR020568 Ribosomal protein S5 domain 2-type fold YYU_03380 IPR036890 YYU_03380 YYU_03440 IPR006054 DNA polymerase III, epsilon subunit YYU_03440 IPR006309 DNA polymerase 3, epsilon subunit YYU_03440 IPR012337 Ribonuclease H-like domain YYU_03440 IPR013520 Exonuclease, RNase T/DNA polymerase III YYU_03440 IPR036397 YYU_03440 YYU_03445 IPR002023 NADH-quinone oxidoreductase subunit E-like YYU_03445 IPR036249 YYU_03445 YYU_03450 IPR001135 NADH-quinone oxidoreductase, subunit D YYU_03450 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site YYU_03450 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H YYU_03450 IPR029014 NiFe hydrogenase-like YYU_03450 IPR038290 YYU_03450 YYU_03455 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II YYU_03455 IPR022890 Ferredoxin--NADP reductase, type 2 YYU_03455 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YYU_03455 IPR036188 YYU_03455 YYU_03460 IPR006283 Thiamine-monophosphate kinase YYU_03460 IPR010918 AIR synthase-related protein, C-terminal domain YYU_03460 IPR016188 PurM, N-terminal-like YYU_03460 IPR036676 YYU_03460 YYU_03460 IPR036921 YYU_03460 YYU_03465 IPR003717 Recombination protein O, RecO YYU_03465 IPR022572 DNA replication/recombination mediator RecO, N-terminal YYU_03465 IPR037278 YYU_03465 YYU_03485 IPR002110 Ankyrin repeat YYU_03485 IPR020683 Ankyrin repeat-containing domain YYU_03485 IPR036770 YYU_03485 YYU_03505 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase YYU_03505 IPR006094 FAD linked oxidase, N-terminal YYU_03505 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal YYU_03505 IPR016167 FAD-binding, type 2, subdomain 1 YYU_03505 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YYU_03505 IPR036318 YYU_03505 YYU_03505 IPR036635 YYU_03505 YYU_03510 IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase YYU_03510 IPR022417 Porphobilinogen deaminase, N-terminal YYU_03510 IPR022418 Porphobilinogen deaminase, C-terminal YYU_03510 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site YYU_03510 IPR036803 YYU_03510 YYU_03515 IPR001645 Folylpolyglutamate synthetase YYU_03515 IPR013221 Mur ligase, central YYU_03515 IPR018109 Folylpolyglutamate synthetase, conserved site YYU_03515 IPR036565 YYU_03515 YYU_03515 IPR036615 YYU_03515 YYU_03520 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit YYU_03520 IPR020556 Amidase, conserved site YYU_03520 IPR023631 Amidase signature domain YYU_03520 IPR036928 YYU_03520 YYU_03525 IPR003382 Flavoprotein YYU_03525 IPR004507 Decarboxylase UbiX/Pad1 YYU_03525 IPR036551 YYU_03525 YYU_03555 IPR000523 Magnesium chelatase, ChlI subunit YYU_03555 IPR001208 Mini-chromosome maintenance, DNA-dependent ATPase YYU_03555 IPR003593 AAA+ ATPase domain YYU_03555 IPR004482 Mg chelatase-related protein YYU_03555 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YYU_03555 IPR020568 Ribosomal protein S5 domain 2-type fold YYU_03555 IPR025158 Mg chelatase-related protein, C-terminal domain YYU_03555 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 YYU_03555 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_03570 IPR000943 RNA polymerase sigma-70 YYU_03570 IPR007627 RNA polymerase sigma-70 region 2 YYU_03570 IPR007630 RNA polymerase sigma-70 region 4 YYU_03570 IPR013324 RNA polymerase sigma factor, region 3/4 YYU_03570 IPR013325 RNA polymerase sigma factor, region 2 YYU_03570 IPR014284 RNA polymerase sigma-70 like domain YYU_03570 IPR036388 YYU_03570 YYU_03575 IPR006517 Archaeophage PsiM2, terminase large subunit YYU_03575 IPR035421 YYU_03575 YYU_03590 IPR000640 Translation elongation factor EFG, V domain YYU_03590 IPR000795 Elongation factor, GTP-binding domain YYU_03590 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YYU_03590 IPR005225 Small GTP-binding protein domain YYU_03590 IPR006297 Elongation factor 4 YYU_03590 IPR013842 GTP-binding protein LepA, C-terminal YYU_03590 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_03590 IPR031157 YYU_03590 YYU_03590 IPR035647 YYU_03590 YYU_03590 IPR038363 YYU_03590 YYU_03595 IPR013216 Methyltransferase type 11 YYU_03595 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_03600 IPR001247 Exoribonuclease, phosphorolytic domain 1 YYU_03600 IPR003029 Ribosomal protein S1, RNA-binding domain YYU_03600 IPR004087 K Homology domain YYU_03600 IPR004088 K Homology domain, type 1 YYU_03600 IPR012162 Polyribonucleotide nucleotidyltransferase YYU_03600 IPR012340 Nucleic acid-binding, OB-fold YYU_03600 IPR015847 Exoribonuclease, phosphorolytic domain 2 YYU_03600 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain YYU_03600 IPR020568 Ribosomal protein S5 domain 2-type fold YYU_03600 IPR022967 RNA-binding domain, S1 YYU_03600 IPR027408 PNPase/RNase PH domain YYU_03600 IPR036345 YYU_03600 YYU_03600 IPR036456 YYU_03600 YYU_03600 IPR036612 YYU_03600 YYU_03605 IPR000589 Ribosomal protein S15 YYU_03605 IPR005290 Ribosomal protein S15, bacterial-type YYU_03605 IPR009068 S15/NS1, RNA-binding YYU_03610 IPR002501 Pseudouridine synthase II YYU_03610 IPR014780 tRNA pseudouridine synthase II, TruB YYU_03610 IPR020103 Pseudouridine synthase, catalytic domain YYU_03610 IPR032819 YYU_03610 YYU_03615 IPR004753 Cell shape determining protein MreB/Mrl YYU_03635 IPR007481 Stringent starvation protein B YYU_03635 IPR036760 YYU_03635 YYU_03655 IPR001977 Dephospho-CoA kinase YYU_03655 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_03660 IPR006070 YrdC-like domain YYU_03660 IPR017945 DHBP synthase RibB-like alpha/beta domain YYU_03665 IPR003593 AAA+ ATPase domain YYU_03665 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_03670 IPR000119 Histone-like bacterial DNA-binding protein YYU_03670 IPR010992 Integration host factor (IHF)-like DNA-binding domain YYU_03685 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YYU_03685 IPR013785 Aldolase-type TIM barrel YYU_03685 IPR036130 YYU_03685 YYU_03690 IPR004821 Cytidyltransferase-like domain YYU_03690 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_03705 IPR006700 Ribosomal RNA small subunit methyltransferase E YYU_03705 IPR015947 PUA-like domain YYU_03705 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YYU_03705 IPR029028 Alpha/beta knot methyltransferases YYU_03710 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YYU_03710 IPR024706 Peroxiredoxin, AhpC-type YYU_03710 IPR036249 YYU_03710 YYU_03715 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YYU_03715 IPR002300 Aminoacyl-tRNA synthetase, class Ia YYU_03715 IPR002301 Isoleucine-tRNA ligase YYU_03715 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YYU_03715 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YYU_03715 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YYU_03715 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_03715 IPR023586 Isoleucine-tRNA ligase, type 2 YYU_03730 IPR010226 NADH-quinone oxidoreductase, chain I YYU_03730 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain YYU_03730 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YYU_03735 IPR000223 Peptidase S26A, signal peptidase I YYU_03735 IPR015927 Peptidase S24/S26A/S26B/S26C YYU_03735 IPR019756 Peptidase S26A, signal peptidase I, serine active site YYU_03735 IPR019757 Peptidase S26A, signal peptidase I, lysine active site YYU_03735 IPR019758 Peptidase S26A, signal peptidase I, conserved site YYU_03735 IPR036286 YYU_03735 YYU_03740 IPR000361 FeS cluster biogenesis YYU_03740 IPR035903 YYU_03740 YYU_03780 IPR000131 ATPase, F1 complex, gamma subunit YYU_03780 IPR035968 YYU_03780 YYU_03785 IPR018234 GTP cyclohydrolase I, conserved site YYU_03785 IPR020602 GTP cyclohydrolase I domain YYU_03925 IPR005828 General substrate transporter YYU_03925 IPR036259 YYU_03925 YYU_03935 IPR001731 Porphobilinogen synthase YYU_03935 IPR013785 Aldolase-type TIM barrel YYU_03935 IPR030656 YYU_03935 YYU_03940 IPR003694 NAD(+) synthetase YYU_03940 IPR014445 Glutamine-dependent NAD(+) synthetase YYU_03940 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_03940 IPR022310 NAD/GMP synthase YYU_03940 IPR036526 YYU_03940 YYU_03955 IPR000432 DNA mismatch repair protein MutS, C-terminal YYU_03955 IPR005748 DNA mismatch repair protein MutS, type 1 YYU_03955 IPR007695 DNA mismatch repair protein MutS-like, N-terminal YYU_03955 IPR007696 DNA mismatch repair protein MutS, core YYU_03955 IPR007860 DNA mismatch repair protein MutS, connector domain YYU_03955 IPR007861 DNA mismatch repair protein MutS, clamp YYU_03955 IPR016151 DNA mismatch repair protein MutS, N-terminal YYU_03955 IPR017261 DNA mismatch repair protein Msh6 YYU_03955 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_03955 IPR036187 YYU_03955 YYU_03955 IPR036678 YYU_03955 YYU_03965 IPR001310 Histidine triad (HIT) protein YYU_03965 IPR019808 Histidine triad, conserved site YYU_03965 IPR036265 YYU_03965 YYU_03970 IPR024455 Phage capsid YYU_03980 IPR001017 Dehydrogenase, E1 component YYU_03980 IPR005475 Transketolase-like, pyrimidine-binding domain YYU_03980 IPR011603 2-oxoglutarate dehydrogenase E1 component YYU_03980 IPR029061 Thiamin diphosphate-binding fold YYU_03980 IPR031717 YYU_03980 YYU_03990 IPR000362 Fumarate lyase family YYU_03990 IPR004769 Adenylosuccinate lyase YYU_03990 IPR008948 L-Aspartase-like YYU_03990 IPR019468 Adenylosuccinate lyase C-terminal YYU_03990 IPR020557 Fumarate lyase, conserved site YYU_03990 IPR022761 Fumarate lyase, N-terminal YYU_03990 IPR024083 Fumarase/histidase, N-terminal YYU_04020 IPR004143 Biotin/lipoate A/B protein ligase YYU_04020 IPR004408 Biotin--acetyl-CoA-carboxylase ligase YYU_04025 IPR036259 YYU_04025 YYU_04040 IPR005839 Methylthiotransferase YYU_04040 IPR006463 tRNA-i(6)A37 modification enzyme MiaB YYU_04040 IPR006638 Elongator protein 3/MiaB/NifB YYU_04040 IPR007197 Radical SAM YYU_04040 IPR013848 Methylthiotransferase, N-terminal YYU_04040 IPR020612 Methylthiotransferase, conserved site YYU_04040 IPR023404 Radical SAM, alpha/beta horseshoe YYU_04040 IPR038135 YYU_04040 YYU_04065 IPR000305 GIY-YIG nuclease superfamily YYU_04065 IPR001162 UvrC family homology region YYU_04065 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 YYU_04065 IPR004791 UvrABC system, subunit C YYU_04065 IPR010994 RuvA domain 2-like YYU_04065 IPR035901 YYU_04065 YYU_04065 IPR036876 YYU_04065 YYU_04065 IPR038476 YYU_04065 YYU_04080 IPR001404 Heat shock protein Hsp90 family YYU_04080 IPR003594 Histidine kinase-like ATPase, C-terminal domain YYU_04080 IPR019805 Heat shock protein Hsp90, conserved site YYU_04080 IPR020568 Ribosomal protein S5 domain 2-type fold YYU_04080 IPR020575 Heat shock protein Hsp90, N-terminal YYU_04080 IPR036890 YYU_04080 YYU_04080 IPR037196 YYU_04080 YYU_04090 IPR005828 General substrate transporter YYU_04090 IPR036259 YYU_04090 YYU_04100 IPR000445 Helix-hairpin-helix motif YYU_04100 IPR003265 HhH-GPD domain YYU_04100 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif YYU_04100 IPR005759 Endonuclease III YYU_04100 IPR011257 DNA glycosylase YYU_04100 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal YYU_04105 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal YYU_04105 IPR005743 DNA gyrase, subunit A YYU_04105 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YYU_04105 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain YYU_04105 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta YYU_04105 IPR013760 DNA topoisomerase, type IIA-like domain YYU_04105 IPR035516 YYU_04105 YYU_04120 IPR013986 DExx box DNA helicase domain YYU_04120 IPR014017 DNA helicase, UvrD-like, C-terminal YYU_04120 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_04120 IPR034739 YYU_04120 YYU_04145 IPR004506 tRNA-specific 2-thiouridylase YYU_04145 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_04145 IPR023382 Adenine nucleotide alpha hydrolase-like domains YYU_04155 IPR009078 Ferritin-like superfamily YYU_04155 IPR011566 Ubiquinone biosynthesis protein Coq7 YYU_04225 IPR003752 Disulphide bond formation protein DsbB/BdbC YYU_04225 IPR023380 Disulphide bond formation protein DsbB-like domain YYU_04225 IPR024199 Uncharacterised conserved protein, DsbB-like YYU_04235 IPR001705 Ribosomal protein L33 YYU_04235 IPR011332 Zinc-binding ribosomal protein YYU_04235 IPR038584 YYU_04235 YYU_04250 IPR002110 Ankyrin repeat YYU_04250 IPR020683 Ankyrin repeat-containing domain YYU_04250 IPR036770 YYU_04250 YYU_04255 IPR003231 Acyl carrier protein (ACP) YYU_04255 IPR006162 Phosphopantetheine attachment site YYU_04255 IPR009081 Acyl carrier protein-like YYU_04255 IPR036736 YYU_04255 YYU_04260 IPR014030 Beta-ketoacyl synthase, N-terminal YYU_04260 IPR014031 Beta-ketoacyl synthase, C-terminal YYU_04260 IPR016039 Thiolase-like YYU_04260 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 YYU_04260 IPR018201 Beta-ketoacyl synthase, active site YYU_04260 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain YYU_04275 IPR003488 DNA recombination-mediator protein A YYU_04275 IPR036388 YYU_04275 YYU_04300 IPR002566 Surface antigen msp4 YYU_04300 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_04305 IPR002099 DNA mismatch repair protein family YYU_04305 IPR013507 DNA mismatch repair protein, C-terminal YYU_04305 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YYU_04305 IPR014762 DNA mismatch repair, conserved site YYU_04305 IPR014790 MutL, C-terminal, dimerisation YYU_04305 IPR020568 Ribosomal protein S5 domain 2-type fold YYU_04305 IPR020667 DNA mismatch repair protein, MutL YYU_04305 IPR036890 YYU_04305 YYU_04305 IPR037198 YYU_04305 YYU_04310 IPR002898 MotA/TolQ/ExbB proton channel YYU_04325 IPR003594 Histidine kinase-like ATPase, C-terminal domain YYU_04325 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain YYU_04325 IPR004358 Signal transduction histidine kinase-related protein, C-terminal YYU_04325 IPR036097 YYU_04325 YYU_04325 IPR036890 YYU_04325 YYU_04330 IPR005814 Aminotransferase class-III YYU_04330 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YYU_04330 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YYU_04330 IPR015424 Pyridoxal phosphate-dependent transferase YYU_04370 IPR002543 FtsK domain YYU_04370 IPR018541 FtsK gamma domain YYU_04370 IPR025199 Domain of unknown function DUF4117 YYU_04370 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_04370 IPR036388 YYU_04370 YYU_04370 IPR036390 YYU_04370 YYU_04375 IPR003425 Uncharacterised protein family Ycf19 YYU_04380 IPR000644 CBS domain YYU_04380 IPR002550 Domain of unknown function DUF21 YYU_04380 IPR005170 Transporter-associated domain YYU_04380 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YYU_04380 IPR036318 YYU_04380 YYU_04385 IPR013785 Aldolase-type TIM barrel YYU_04385 IPR022998 Thiamin phosphate synthase superfamily YYU_04385 IPR034291 YYU_04385 YYU_04385 IPR036206 YYU_04385 YYU_04390 IPR005177 Bifunctional kinase-pyrophosphorylase YYU_04390 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein YYU_04395 IPR001763 Rhodanese-like domain YYU_04395 IPR020936 Uncharacterised protein family UPF0176 YYU_04395 IPR036873 YYU_04395 YYU_04405 IPR008160 Collagen triple helix repeat YYU_04410 IPR002376 Formyl transferase, N-terminal YYU_04410 IPR005793 Formyl transferase, C-terminal YYU_04410 IPR005794 Methionyl-tRNA formyltransferase YYU_04410 IPR011034 Formyl transferase, C-terminal-like YYU_04410 IPR036477 YYU_04410 YYU_04410 IPR037022 YYU_04410 YYU_04425 IPR003111 Peptidase S16, lon N-terminal YYU_04425 IPR003593 AAA+ ATPase domain YYU_04425 IPR003959 ATPase, AAA-type, core YYU_04425 IPR004815 Lon protease, bacterial/eukaryotic-type YYU_04425 IPR008268 Peptidase S16, active site YYU_04425 IPR008269 Peptidase S16, Lon C-terminal YYU_04425 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YYU_04425 IPR015947 PUA-like domain YYU_04425 IPR020568 Ribosomal protein S5 domain 2-type fold YYU_04425 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_04425 IPR027543 Lon protease, bacterial YYU_04430 IPR003593 AAA+ ATPase domain YYU_04430 IPR003959 ATPase, AAA-type, core YYU_04430 IPR004487 Clp protease, ATP-binding subunit ClpX YYU_04430 IPR010603 Zinc finger, ClpX C4-type YYU_04430 IPR019489 Clp ATPase, C-terminal YYU_04430 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_04430 IPR038366 YYU_04430 YYU_04435 IPR001907 ATP-dependent Clp protease proteolytic subunit YYU_04435 IPR018215 ClpP, active site YYU_04435 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA YYU_04435 IPR029045 ClpP/crotonase-like domain YYU_04435 IPR033135 YYU_04435 YYU_04455 IPR007686 YutG/PgpA domain YYU_04455 IPR026037 Phosphatidylglycerophosphatase A YYU_04455 IPR036681 YYU_04455 YYU_04460 IPR000182 GNAT domain YYU_04460 IPR016181 Acyl-CoA N-acyltransferase YYU_04465 IPR035965 YYU_04465 YYU_04470 IPR007479 ISC system FeS cluster assembly, IscX YYU_04470 IPR036762 YYU_04470 YYU_04475 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YYU_04475 IPR004839 Aminotransferase, class I/classII YYU_04475 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YYU_04475 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YYU_04475 IPR015424 Pyridoxal phosphate-dependent transferase YYU_04480 IPR002566 Surface antigen msp4 YYU_04485 IPR002566 Surface antigen msp4 YYU_04485 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_04495 IPR006127 Periplasmic solute binding protein family YYU_04500 IPR003439 ABC transporter-like YYU_04500 IPR003593 AAA+ ATPase domain YYU_04500 IPR017871 ABC transporter, conserved site YYU_04500 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_04505 IPR004147 UbiB domain YYU_04505 IPR010232 Probable protein kinase UbiB YYU_04505 IPR011009 Protein kinase-like domain YYU_04510 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain YYU_04515 IPR003439 ABC transporter-like YYU_04515 IPR003593 AAA+ ATPase domain YYU_04515 IPR008995 Molybdate/tungstate binding, C-terminal YYU_04515 IPR017871 ABC transporter, conserved site YYU_04515 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_04520 IPR003369 Sec-independent protein translocase protein TatA/B/E YYU_04520 IPR006312 Sec-independent protein translocase protein TatA/E YYU_04525 IPR000093 DNA recombination protein RecR YYU_04525 IPR006171 Toprim domain YYU_04525 IPR015967 Recombination protein RecR, conserved site YYU_04525 IPR023627 Recombination protein RecR YYU_04525 IPR023628 Recombination protein RecR, C4-type zinc finger YYU_04530 IPR001912 Ribosomal protein S4/S9, N-terminal YYU_04530 IPR002942 RNA-binding S4 domain YYU_04530 IPR005709 Ribosomal protein S4, bacterial-type YYU_04530 IPR018079 Ribosomal protein S4, conserved site YYU_04530 IPR036986 YYU_04530 YYU_04540 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha YYU_04550 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase YYU_04550 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase YYU_04550 IPR029056 Ribokinase-like YYU_04555 IPR013317 Chromosomal replication control, initiator (DnaA)/regulator (Hda) YYU_04555 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_04560 IPR002549 Uncharacterised protein family UPF0118 YYU_04575 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor YYU_04575 IPR034804 YYU_04575 YYU_04580 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit YYU_04580 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit YYU_04580 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site YYU_04580 IPR034804 YYU_04580 YYU_04590 IPR001986 Enolpyruvate transferase domain YYU_04590 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YYU_04590 IPR036968 YYU_04590 YYU_04595 IPR003141 Polymerase/histidinol phosphatase, N-terminal YYU_04595 IPR004013 PHP, C-terminal YYU_04595 IPR004805 DNA polymerase III, alpha subunit YYU_04595 IPR011708 Bacterial DNA polymerase III, alpha subunit YYU_04595 IPR016195 Polymerase/histidinol phosphatase-like YYU_04595 IPR029460 DNA polymerase, helix-hairpin-helix motif YYU_04600 IPR002634 BolA protein YYU_04600 IPR036065 YYU_04600 YYU_04625 IPR000659 Pyridoxamine 5'-phosphate oxidase YYU_04625 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain YYU_04625 IPR012349 FMN-binding split barrel YYU_04625 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal YYU_04625 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site YYU_04635 IPR003140 Phospholipase/carboxylesterase/thioesterase YYU_04635 IPR029058 Alpha/Beta hydrolase fold YYU_04640 IPR023635 Peptide deformylase YYU_04640 IPR036821 YYU_04640 YYU_04645 IPR001295 Dihydroorotate dehydrogenase, conserved site YYU_04645 IPR005719 Dihydroorotate dehydrogenase, class 2 YYU_04645 IPR005720 Dihydroorotate dehydrogenase domain YYU_04645 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 YYU_04645 IPR013785 Aldolase-type TIM barrel YYU_04650 IPR004619 Type III pantothenate kinase YYU_04655 IPR002758 Na+/H+ antiporter subunit E YYU_04660 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YYU_04660 IPR004839 Aminotransferase, class I/classII YYU_04660 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YYU_04660 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YYU_04660 IPR015424 Pyridoxal phosphate-dependent transferase YYU_04665 IPR002566 Surface antigen msp4 YYU_04665 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_04675 IPR002566 Surface antigen msp4 YYU_04685 IPR020143 Uncharacterised protein family, RP436 YYU_04690 IPR012337 Ribonuclease H-like domain YYU_04690 IPR022898 Ribonuclease HII YYU_04690 IPR024567 Ribonuclease HII/HIII domain YYU_04690 IPR036397 YYU_04690 YYU_04695 IPR000722 RNA polymerase, alpha subunit YYU_04695 IPR006592 RNA polymerase, N-terminal YYU_04695 IPR007066 RNA polymerase Rpb1, domain 3 YYU_04695 IPR007080 RNA polymerase Rpb1, domain 1 YYU_04695 IPR007081 RNA polymerase Rpb1, domain 5 YYU_04695 IPR007083 RNA polymerase Rpb1, domain 4 YYU_04695 IPR012754 DNA-directed RNA polymerase, subunit beta-prime YYU_04695 IPR038120 YYU_04695 YYU_04700 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 YYU_04700 IPR007121 RNA polymerase, beta subunit, conserved site YYU_04700 IPR007641 RNA polymerase Rpb2, domain 7 YYU_04700 IPR007642 RNA polymerase Rpb2, domain 2 YYU_04700 IPR007644 RNA polymerase, beta subunit, protrusion YYU_04700 IPR007645 RNA polymerase Rpb2, domain 3 YYU_04700 IPR010243 DNA-directed RNA polymerase, beta subunit YYU_04700 IPR014724 RNA polymerase Rpb2, OB-fold YYU_04700 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain YYU_04700 IPR037033 YYU_04700 YYU_04700 IPR037034 YYU_04700 YYU_04705 IPR000206 Ribosomal protein L7/L12 YYU_04705 IPR013823 Ribosomal protein L7/L12, C-terminal YYU_04705 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YYU_04705 IPR036235 YYU_04705 YYU_04710 IPR001790 Ribosomal protein L10/acidic P0 YYU_04715 IPR002143 Ribosomal protein L1 YYU_04715 IPR005878 Ribosomal protein L1, bacterial-type YYU_04715 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich YYU_04715 IPR023673 Ribosomal protein L1, conserved site YYU_04715 IPR023674 Ribosomal protein L1-like YYU_04715 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein YYU_04720 IPR000911 Ribosomal protein L11/L12 YYU_04720 IPR006519 Ribosomal protein L11, bacterial-type YYU_04720 IPR020783 Ribosomal protein L11, C-terminal YYU_04720 IPR020784 Ribosomal protein L11, N-terminal YYU_04720 IPR020785 Ribosomal protein L11, conserved site YYU_04720 IPR036769 YYU_04720 YYU_04720 IPR036796 YYU_04720 YYU_04725 IPR001062 Transcription antitermination protein, NusG YYU_04725 IPR006645 NusG, N-terminal YYU_04725 IPR008991 Translation protein SH3-like domain YYU_04725 IPR014722 Ribosomal protein L2 domain 2 YYU_04725 IPR036735 YYU_04725 YYU_04730 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit YYU_04730 IPR005807 SecE subunit of protein translocation complex YYU_04730 IPR038379 YYU_04730 YYU_04740 IPR000795 Elongation factor, GTP-binding domain YYU_04740 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal YYU_04740 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YYU_04740 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle YYU_04740 IPR005225 Small GTP-binding protein domain YYU_04740 IPR009000 Translation protein, beta-barrel domain YYU_04740 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YYU_04740 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_04740 IPR031157 YYU_04740 YYU_04745 IPR000640 Translation elongation factor EFG, V domain YYU_04745 IPR000795 Elongation factor, GTP-binding domain YYU_04745 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 YYU_04745 IPR004540 Translation elongation factor EFG/EF2 YYU_04745 IPR005225 Small GTP-binding protein domain YYU_04745 IPR005517 Translation elongation factor EFG/EF2, domain IV YYU_04745 IPR009000 Translation protein, beta-barrel domain YYU_04745 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YYU_04745 IPR020568 Ribosomal protein S5 domain 2-type fold YYU_04745 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_04745 IPR031157 YYU_04745 YYU_04745 IPR035647 YYU_04745 YYU_04750 IPR000235 Ribosomal protein S5/S7 YYU_04750 IPR005717 Ribosomal protein S7, bacterial/organellar-type YYU_04750 IPR020606 Ribosomal protein S7, conserved site YYU_04750 IPR023798 Ribosomal protein S7 domain YYU_04750 IPR036823 YYU_04750 YYU_04755 IPR005679 Ribosomal protein S12, bacteria YYU_04755 IPR006032 Ribosomal protein S12/S23 YYU_04755 IPR012340 Nucleic acid-binding, OB-fold YYU_04760 IPR001279 Beta-lactamase-like YYU_04760 IPR011108 RNA-metabolising metallo-beta-lactamase YYU_04760 IPR036866 YYU_04760 YYU_04765 IPR007195 TolB, N-terminal YYU_04765 IPR011042 Six-bladed beta-propeller, TolB-like YYU_04765 IPR011659 WD40-like Beta Propeller YYU_04765 IPR036752 YYU_04765 YYU_04790 IPR012762 Ubiquinone biosynthesis protein COQ9 YYU_04790 IPR013718 COQ9 YYU_04795 IPR003997 RTX secretion protein D, Gram-negative bacteria YYU_04795 IPR010129 Type I secretion membrane fusion protein, HlyD YYU_04800 IPR000515 MetI-like domain YYU_04800 IPR035906 YYU_04800 YYU_04805 IPR004136 2-nitropropane dioxygenase, NPD YYU_04805 IPR013785 Aldolase-type TIM barrel YYU_04810 IPR003782 Copper chaperone SCO1/SenC YYU_04810 IPR036249 YYU_04810 YYU_04815 IPR024370 PBP domain YYU_04820 IPR001911 Ribosomal protein S21 YYU_04825 IPR005809 Succinyl-CoA synthetase, beta subunit YYU_04825 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YYU_04825 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type YYU_04825 IPR013815 ATP-grasp fold, subdomain 1 YYU_04825 IPR016102 Succinyl-CoA synthetase-like YYU_04825 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site YYU_04830 IPR003781 CoA-binding YYU_04830 IPR005810 Succinyl-CoA ligase, alpha subunit YYU_04830 IPR005811 ATP-citrate lyase/succinyl-CoA ligase YYU_04830 IPR016102 Succinyl-CoA synthetase-like YYU_04830 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site YYU_04830 IPR033847 YYU_04830 YYU_04830 IPR036291 YYU_04830 YYU_04850 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase YYU_04850 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_04860 IPR002318 Alanine-tRNA ligase, class IIc YYU_04860 IPR009000 Translation protein, beta-barrel domain YYU_04860 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YYU_04860 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain YYU_04860 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain YYU_04860 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal YYU_04860 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria YYU_04865 IPR000515 MetI-like domain YYU_04865 IPR011864 Phosphate ABC transporter, permease protein PstC YYU_04865 IPR035906 YYU_04865 YYU_04870 IPR008146 Glutamine synthetase, catalytic domain YYU_04870 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YYU_04875 IPR001279 Beta-lactamase-like YYU_04875 IPR036866 YYU_04875 YYU_04910 IPR001100 YYU_04910 YYU_04910 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYU_04910 IPR006258 Dihydrolipoamide dehydrogenase YYU_04910 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site YYU_04910 IPR016156 FAD/NAD-linked reductase, dimerisation domain YYU_04910 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YYU_04910 IPR036188 YYU_04910 YYU_04915 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YYU_04915 IPR003593 AAA+ ATPase domain YYU_04915 IPR004665 Transcription termination factor Rho YYU_04915 IPR011112 Rho termination factor, N-terminal YYU_04915 IPR011113 Rho termination factor, RNA-binding YYU_04915 IPR011129 Cold shock protein YYU_04915 IPR012340 Nucleic acid-binding, OB-fold YYU_04915 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_04915 IPR036269 YYU_04915 YYU_04920 IPR001353 Proteasome, subunit alpha/beta YYU_04920 IPR022281 ATP-dependent protease, HslV subunit YYU_04920 IPR029055 Nucleophile aminohydrolases, N-terminal YYU_04925 IPR003593 AAA+ ATPase domain YYU_04925 IPR003959 ATPase, AAA-type, core YYU_04925 IPR004491 Heat shock protein HslU YYU_04925 IPR019489 Clp ATPase, C-terminal YYU_04925 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_04930 IPR004033 UbiE/COQ5 methyltransferase YYU_04930 IPR023576 UbiE/COQ5 methyltransferase, conserved site YYU_04930 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_04935 IPR002566 Surface antigen msp4 YYU_04940 IPR002566 Surface antigen msp4 YYU_04955 IPR002300 Aminoacyl-tRNA synthetase, class Ia YYU_04955 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YYU_04955 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_04955 IPR014758 Methionyl-tRNA synthetase YYU_04955 IPR015413 Methionyl/Leucyl tRNA synthetase YYU_04955 IPR023457 Methionine-tRNA synthetase, type 2 YYU_04955 IPR033911 YYU_04955 YYU_04965 IPR002566 Surface antigen msp4 YYU_04965 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_04980 IPR001505 Copper centre Cu(A) YYU_04980 IPR002429 Cytochrome c oxidase subunit II C-terminal YYU_04980 IPR008972 Cupredoxin YYU_04980 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain YYU_04980 IPR014222 Cytochrome c oxidase, subunit II YYU_04980 IPR036257 YYU_04980 YYU_04985 IPR000883 Cytochrome c oxidase subunit I YYU_04985 IPR014241 Cytochrome c oxidase, subunit I bacterial type YYU_04985 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site YYU_04985 IPR036927 YYU_04985 YYU_04990 IPR000537 UbiA prenyltransferase family YYU_04990 IPR006369 Protohaem IX farnesyltransferase YYU_04990 IPR030470 YYU_04990 YYU_04995 IPR011990 Tetratricopeptide-like helical domain YYU_04995 IPR017689 Outer membrane protein assembly factor BamD YYU_04995 IPR039565 YYU_04995 YYU_05000 IPR000115 Phosphoribosylglycinamide synthetase YYU_05000 IPR011054 Rudiment single hybrid motif YYU_05000 IPR013815 ATP-grasp fold, subdomain 1 YYU_05000 IPR016185 Pre-ATP-grasp domain YYU_05000 IPR020559 Phosphoribosylglycinamide synthetase, conserved site YYU_05000 IPR020560 Phosphoribosylglycinamide synthetase, C-domain YYU_05000 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YYU_05000 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal YYU_05000 IPR037123 YYU_05000 YYU_05005 IPR003849 Preprotein translocase YajC YYU_05025 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase YYU_05025 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_05040 IPR001001 DNA polymerase III, beta chain YYU_05040 IPR022634 DNA polymerase III, beta chain, N-terminal YYU_05040 IPR022635 DNA polymerase III, beta chain, C-terminal YYU_05040 IPR022637 DNA polymerase III, beta chain, central YYU_05045 IPR002562 3'-5' exonuclease domain YYU_05045 IPR012337 Ribonuclease H-like domain YYU_05045 IPR036397 YYU_05045 YYU_05050 IPR001789 Signal transduction response regulator, receiver domain YYU_05050 IPR001867 Signal transduction response regulator, C-terminal YYU_05050 IPR011006 CheY-like superfamily YYU_05050 IPR036388 YYU_05050 YYU_05055 IPR001387 Cro/C1-type helix-turn-helix domain YYU_05055 IPR010744 Bacteriophage CI repressor YYU_05055 IPR010982 Lambda repressor-like, DNA-binding domain YYU_05055 IPR036286 YYU_05055 YYU_05060 IPR008162 Inorganic pyrophosphatase YYU_05060 IPR036649 YYU_05060 YYU_05090 IPR000754 Ribosomal protein S9 YYU_05090 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup YYU_05090 IPR020568 Ribosomal protein S5 domain 2-type fold YYU_05090 IPR020574 Ribosomal protein S9, conserved site YYU_05090 IPR023035 Ribosomal protein S9, bacterial/plastid YYU_05095 IPR005822 Ribosomal protein L13 YYU_05095 IPR005823 Ribosomal protein L13, bacterial-type YYU_05095 IPR036899 YYU_05095 YYU_05100 IPR003423 Outer membrane efflux protein YYU_05110 IPR019591 Mrp/NBP35 ATP-binding protein YYU_05110 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_05110 IPR033756 YYU_05110 YYU_05115 IPR005946 Ribose-phosphate diphosphokinase YYU_05115 IPR029057 Phosphoribosyltransferase-like YYU_05115 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain YYU_05120 IPR003837 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit YYU_05120 IPR036113 YYU_05120 YYU_05130 IPR002566 Surface antigen msp4 YYU_05130 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05135 IPR002566 Surface antigen msp4 YYU_05145 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel YYU_05145 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YYU_05145 IPR006249 Aconitate/iron regulatory protein 2 YYU_05145 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel YYU_05145 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 YYU_05145 IPR018136 Aconitase family, 4Fe-4S cluster binding site YYU_05145 IPR036008 YYU_05145 YYU_05150 IPR002566 Surface antigen msp4 YYU_05155 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YYU_05155 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit YYU_05155 IPR011054 Rudiment single hybrid motif YYU_05155 IPR013815 ATP-grasp fold, subdomain 1 YYU_05155 IPR016185 Pre-ATP-grasp domain YYU_05160 IPR007474 ApaG domain YYU_05160 IPR036767 YYU_05160 YYU_05180 IPR002566 Surface antigen msp4 YYU_05185 IPR002566 Surface antigen msp4 YYU_05185 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05205 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain YYU_05205 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_05210 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 YYU_05215 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 YYU_05220 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 YYU_05225 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 YYU_05235 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 YYU_05240 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 YYU_05275 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 YYU_05285 IPR001107 Band 7 protein YYU_05285 IPR010201 HflK YYU_05285 IPR036013 YYU_05285 YYU_05290 IPR001107 Band 7 protein YYU_05290 IPR001972 Stomatin family YYU_05290 IPR010200 HflC YYU_05290 IPR036013 YYU_05290 YYU_05295 IPR001478 PDZ domain YYU_05295 IPR001940 Peptidase S1C YYU_05295 IPR009003 Trypsin-like cysteine/serine peptidase domain YYU_05295 IPR011782 Peptidase S1C, Do YYU_05295 IPR036034 YYU_05295 YYU_05300 IPR000999 Ribonuclease III domain YYU_05300 IPR011907 Ribonuclease III YYU_05300 IPR014720 Double-stranded RNA-binding domain YYU_05300 IPR036389 YYU_05300 YYU_05305 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 YYU_05305 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain YYU_05315 IPR002566 Surface antigen msp4 YYU_05315 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05330 IPR002566 Surface antigen msp4 YYU_05330 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05345 IPR007863 Peptidase M16, C-terminal domain YYU_05345 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YYU_05345 IPR011765 Peptidase M16, N-terminal YYU_05350 IPR007863 Peptidase M16, C-terminal domain YYU_05350 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like YYU_05350 IPR011765 Peptidase M16, N-terminal YYU_05355 IPR001872 Peptidase A8, signal peptidase II YYU_05360 IPR002606 Riboflavin kinase, bacterial YYU_05360 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_05360 IPR015864 FAD synthetase YYU_05360 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic YYU_05360 IPR023465 Riboflavin kinase domain YYU_05365 IPR002109 Glutaredoxin YYU_05365 IPR011767 Glutaredoxin active site YYU_05365 IPR011900 Glutaredoxin, GrxC YYU_05365 IPR014025 Glutaredoxin subgroup YYU_05365 IPR036249 YYU_05365 YYU_05370 IPR002566 Surface antigen msp4 YYU_05375 IPR003494 SHS2 domain inserted in FtsA YYU_05375 IPR020823 Cell division protein FtsA YYU_05380 IPR001667 DDH domain YYU_05380 IPR003156 DHHA1 domain YYU_05380 IPR004610 Bacterial RecJ exonuclease YYU_05380 IPR038763 YYU_05380 YYU_05385 IPR014273 Isocitrate dehydrogenase, alphaproteobacteria-type YYU_05385 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site YYU_05385 IPR024084 Isopropylmalate dehydrogenase-like domain YYU_05395 IPR002566 Surface antigen msp4 YYU_05395 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05400 IPR002566 Surface antigen msp4 YYU_05400 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05405 IPR001646 Pentapeptide repeat YYU_05410 IPR002994 Surfeit locus 1/Shy1 YYU_05415 IPR000836 Phosphoribosyltransferase domain YYU_05415 IPR006273 Orotate phosphoribosyltransferase, bacterial YYU_05415 IPR023031 Orotate phosphoribosyltransferase YYU_05415 IPR029057 Phosphoribosyltransferase-like YYU_05420 IPR000594 UBA/THIF-type NAD/FAD binding fold YYU_05420 IPR035985 YYU_05420 YYU_05425 IPR002109 Glutaredoxin YYU_05425 IPR014025 Glutaredoxin subgroup YYU_05425 IPR036249 YYU_05425 YYU_05430 IPR002566 Surface antigen msp4 YYU_05435 IPR002566 Surface antigen msp4 YYU_05435 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05440 IPR000185 Protein translocase subunit SecA YYU_05440 IPR004027 SEC-C motif YYU_05440 IPR011115 SecA DEAD-like, N-terminal YYU_05440 IPR011116 SecA Wing/Scaffold YYU_05440 IPR011130 SecA preprotein, cross-linking domain YYU_05440 IPR020937 SecA conserved site YYU_05440 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_05440 IPR036266 YYU_05440 YYU_05440 IPR036670 YYU_05440 YYU_05445 IPR000642 Peptidase M41 YYU_05445 IPR003593 AAA+ ATPase domain YYU_05445 IPR003959 ATPase, AAA-type, core YYU_05445 IPR003960 ATPase, AAA-type, conserved site YYU_05445 IPR005936 Peptidase, FtsH YYU_05445 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_05445 IPR037219 YYU_05445 YYU_05460 IPR003445 Cation transporter YYU_05465 IPR003494 SHS2 domain inserted in FtsA YYU_05465 IPR020823 Cell division protein FtsA YYU_05475 IPR002566 Surface antigen msp4 YYU_05490 IPR003319 ATP synthase YMF19-like, N-terminal YYU_05495 IPR000454 ATPase, F0 complex, subunit C YYU_05495 IPR002379 V-ATPase proteolipid subunit C-like domain YYU_05495 IPR035921 YYU_05495 YYU_05495 IPR038662 YYU_05495 YYU_05500 IPR000568 ATPase, F0 complex, subunit A YYU_05500 IPR023011 ATPase, F0 complex, subunit A, active site YYU_05500 IPR035908 YYU_05500 YYU_05505 IPR032837 YYU_05505 YYU_05510 IPR002566 Surface antigen msp4 YYU_05510 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05515 IPR002566 Surface antigen msp4 YYU_05515 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05525 IPR001451 Bacterial transferase hexapeptide repeat YYU_05525 IPR011004 Trimeric LpxA-like YYU_05530 IPR000089 Biotin/lipoyl attachment YYU_05530 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YYU_05530 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site YYU_05530 IPR006255 Dihydrolipoamide succinyltransferase YYU_05530 IPR011053 Single hybrid motif YYU_05530 IPR023213 Chloramphenicol acetyltransferase-like domain YYU_05535 IPR000994 Peptidase M24, structural domain YYU_05535 IPR001714 Peptidase M24, methionine aminopeptidase YYU_05535 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 YYU_05535 IPR036005 YYU_05535 YYU_05540 IPR002052 DNA methylase, N-6 adenine-specific, conserved site YYU_05540 IPR004556 Modification methylase HemK YYU_05540 IPR007848 Methyltransferase small domain YYU_05540 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific YYU_05540 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_05545 IPR002566 Surface antigen msp4 YYU_05560 IPR000883 Cytochrome c oxidase subunit I YYU_05560 IPR036927 YYU_05560 YYU_05565 IPR000462 CDP-alcohol phosphatidyltransferase YYU_05565 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YYU_05570 IPR002695 AICARFT/IMPCHase bienzyme YYU_05570 IPR011607 Methylglyoxal synthase-like domain YYU_05570 IPR016193 Cytidine deaminase-like YYU_05570 IPR024051 AICAR transformylase domain YYU_05570 IPR036914 YYU_05570 YYU_05575 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YYU_05575 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ YYU_05575 IPR029069 HotDog domain YYU_05580 IPR005632 Chaperone protein Skp YYU_05580 IPR024930 Skp domain YYU_05585 IPR000184 Bacterial surface antigen (D15) YYU_05585 IPR010827 Surface antigen variable number YYU_05585 IPR023707 Outer membrane protein assembly factor BamA YYU_05590 IPR001478 PDZ domain YYU_05590 IPR008915 Peptidase M50 YYU_05590 IPR036034 YYU_05590 YYU_05595 IPR005631 Flavinator of succinate dehydrogenase YYU_05595 IPR036714 YYU_05595 YYU_05600 IPR036249 YYU_05600 YYU_05605 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YYU_05605 IPR012338 Beta-lactamase/transpeptidase-like YYU_05605 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YYU_05605 IPR015956 Penicillin-binding protein-associated YYU_05605 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YYU_05605 IPR037167 YYU_05605 YYU_05610 IPR002566 Surface antigen msp4 YYU_05610 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05615 IPR002646 Poly A polymerase, head domain YYU_05615 IPR032828 YYU_05615 YYU_05620 IPR001564 Nucleoside diphosphate kinase YYU_05620 IPR034907 YYU_05620 YYU_05620 IPR036850 YYU_05620 YYU_05625 IPR001387 Cro/C1-type helix-turn-helix domain YYU_05625 IPR010982 Lambda repressor-like, DNA-binding domain YYU_05630 IPR002566 Surface antigen msp4 YYU_05630 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05635 IPR002566 Surface antigen msp4 YYU_05635 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05640 IPR002566 Surface antigen msp4 YYU_05640 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05645 IPR013765 DNA recombination and repair protein RecA YYU_05645 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_05650 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site YYU_05650 IPR002300 Aminoacyl-tRNA synthetase, class Ia YYU_05650 IPR002303 Valine-tRNA ligase YYU_05650 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain YYU_05650 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding YYU_05650 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding YYU_05650 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_05650 IPR022874 Valine-tRNA ligase, type 2 YYU_05660 IPR002566 Surface antigen msp4 YYU_05660 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05665 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain YYU_05665 IPR003593 AAA+ ATPase domain YYU_05665 IPR004390 Signal-recognition particle receptor FtsY YYU_05665 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle YYU_05665 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_05665 IPR036225 YYU_05665 YYU_05670 IPR004472 Dethiobiotin synthase BioD YYU_05670 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_05675 IPR002566 Surface antigen msp4 YYU_05675 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05680 IPR002566 Surface antigen msp4 YYU_05685 IPR011718 Glutamate--cysteine ligase GshA YYU_05690 IPR002020 Citrate synthase-like YYU_05690 IPR010953 Citrate synthase, type I YYU_05690 IPR016142 Citrate synthase-like, large alpha subdomain YYU_05690 IPR016143 Citrate synthase-like, small alpha subdomain YYU_05690 IPR019810 Citrate synthase active site YYU_05690 IPR024176 Citrate synthase, bacterial-type YYU_05690 IPR036969 YYU_05690 YYU_05695 IPR001674 GMP synthase, C-terminal YYU_05695 IPR004739 GMP synthase, N-terminal YYU_05695 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_05695 IPR017926 Glutamine amidotransferase YYU_05695 IPR022955 GMP synthase YYU_05695 IPR029062 Class I glutamine amidotransferase-like YYU_05710 IPR002566 Surface antigen msp4 YYU_05710 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05715 IPR002566 Surface antigen msp4 YYU_05715 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05720 IPR002566 Surface antigen msp4 YYU_05720 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05730 IPR002566 Surface antigen msp4 YYU_05735 IPR002566 Surface antigen msp4 YYU_05740 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site YYU_05740 IPR004839 Aminotransferase, class I/classII YYU_05740 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase YYU_05740 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 YYU_05740 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 YYU_05740 IPR015424 Pyridoxal phosphate-dependent transferase YYU_05745 IPR002305 Aminoacyl-tRNA synthetase, class Ic YYU_05745 IPR002307 Tyrosine-tRNA ligase YYU_05745 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold YYU_05745 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 YYU_05745 IPR036986 YYU_05745 YYU_05755 IPR004809 Glutamine synthetase type I YYU_05755 IPR008146 Glutamine synthetase, catalytic domain YYU_05755 IPR008147 Glutamine synthetase, beta-Grasp YYU_05755 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain YYU_05755 IPR027303 Glutamine synthetase, glycine-rich site YYU_05755 IPR036651 YYU_05755 YYU_05760 IPR000092 Polyprenyl synthetase YYU_05760 IPR008949 Terpenoid synthase YYU_05760 IPR033749 YYU_05760 YYU_05765 IPR002566 Surface antigen msp4 YYU_05770 IPR002566 Surface antigen msp4 YYU_05770 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05785 IPR005790 DNA polymerase III, delta subunit YYU_05785 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YYU_05785 IPR010372 DNA polymerase III, delta YYU_05785 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_05790 IPR002566 Surface antigen msp4 YYU_05800 IPR002566 Surface antigen msp4 YYU_05800 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05805 IPR002566 Surface antigen msp4 YYU_05805 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05810 IPR000089 Biotin/lipoyl attachment YYU_05810 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain YYU_05810 IPR004167 E3 binding YYU_05810 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex YYU_05810 IPR011053 Single hybrid motif YYU_05810 IPR023213 Chloramphenicol acetyltransferase-like domain YYU_05810 IPR036625 YYU_05810 YYU_05815 IPR002915 DeoC/FbaB/ lacD aldolase YYU_05815 IPR013785 Aldolase-type TIM barrel YYU_05840 IPR001288 Translation initiation factor 3 YYU_05840 IPR019814 Translation initiation factor 3, N-terminal YYU_05840 IPR019815 Translation initiation factor 3, C-terminal YYU_05840 IPR036787 YYU_05840 YYU_05840 IPR036788 YYU_05840 YYU_05845 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain YYU_05845 IPR002320 Threonine-tRNA ligase, class IIa YYU_05845 IPR004154 Anticodon-binding YYU_05845 IPR012947 Threonyl/alanyl tRNA synthetase, SAD YYU_05845 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain YYU_05845 IPR036621 YYU_05845 YYU_05850 IPR008136 CinA, C-terminal YYU_05850 IPR036653 YYU_05850 YYU_05855 IPR001857 Ribosomal protein L19 YYU_05855 IPR008991 Translation protein SH3-like domain YYU_05855 IPR038657 YYU_05855 YYU_05860 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria YYU_05860 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain YYU_05860 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal YYU_05860 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal YYU_05860 IPR029028 Alpha/beta knot methyltransferases YYU_05865 IPR002676 RimM protein YYU_05865 IPR009000 Translation protein, beta-barrel domain YYU_05865 IPR011033 PRC-barrel-like YYU_05865 IPR011961 16S rRNA processing protein RimM YYU_05865 IPR036976 YYU_05865 YYU_05870 IPR002566 Surface antigen msp4 YYU_05870 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05875 IPR006222 Glycine cleavage T-protein, N-terminal YYU_05875 IPR017703 YgfZ/GcvT conserved site YYU_05875 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA YYU_05880 IPR002541 Cytochrome c assembly protein YYU_05880 IPR003567 Cytochrome c-type biogenesis protein YYU_05880 IPR003568 Cytochrome c-type biogenesis protein CcmF YYU_05880 IPR032523 YYU_05880 YYU_05885 IPR002566 Surface antigen msp4 YYU_05885 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05890 IPR002566 Surface antigen msp4 YYU_05890 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05895 IPR002566 Surface antigen msp4 YYU_05895 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05900 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YYU_05900 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site YYU_05900 IPR036571 YYU_05900 YYU_05905 IPR029044 Nucleotide-diphospho-sugar transferases YYU_05905 IPR034683 YYU_05905 YYU_05915 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain YYU_05915 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE YYU_05915 IPR033747 YYU_05915 YYU_05915 IPR035893 YYU_05915 YYU_05920 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YYU_05920 IPR036249 YYU_05920 YYU_05925 IPR000119 Histone-like bacterial DNA-binding protein YYU_05925 IPR010992 Integration host factor (IHF)-like DNA-binding domain YYU_05925 IPR020816 Histone-like DNA-binding protein, conserved site YYU_05930 IPR000551 MerR-type HTH domain YYU_05930 IPR009061 DNA binding domain, putative YYU_05945 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 YYU_05945 IPR006073 GTP binding domain YYU_05945 IPR012675 Beta-grasp domain YYU_05945 IPR012676 TGS-like YYU_05945 IPR013029 Domain of unknown function DUF933 YYU_05945 IPR023192 TGS-like domain YYU_05945 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_05955 IPR002566 Surface antigen msp4 YYU_05955 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_05960 IPR004520 tRNA modification GTPase MnmE YYU_05960 IPR005225 Small GTP-binding protein domain YYU_05960 IPR006073 GTP binding domain YYU_05960 IPR018948 GTP-binding protein TrmE, N-terminal YYU_05960 IPR025867 tRNA modification GTPase MnmE C-terminal domain YYU_05960 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 YYU_05960 IPR027368 tRNA modification GTPase MnmE domain 2 YYU_05960 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_05965 IPR002036 Endoribonuclease YbeY YYU_05965 IPR020549 Endoribonuclease YbeY, conserved site YYU_05965 IPR023091 Metalloprotease catalytic domain, predicted YYU_05970 IPR002740 EVE domain YYU_05970 IPR015947 PUA-like domain YYU_05975 IPR000158 Cell division protein FtsZ YYU_05975 IPR003008 Tubulin/FtsZ, GTPase domain YYU_05975 IPR008280 Tubulin/FtsZ, C-terminal YYU_05975 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain YYU_05975 IPR020805 Cell division protein FtsZ, conserved site YYU_05975 IPR024757 Cell division protein FtsZ, C-terminal YYU_05975 IPR036525 YYU_05975 YYU_05975 IPR037103 YYU_05975 YYU_05995 IPR003382 Flavoprotein YYU_05995 IPR036551 YYU_05995 YYU_06000 IPR001650 Helicase, C-terminal YYU_06000 IPR011545 DEAD/DEAH box helicase domain YYU_06000 IPR012340 Nucleic acid-binding, OB-fold YYU_06000 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YYU_06000 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_06000 IPR033454 YYU_06000 YYU_06005 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain YYU_06005 IPR036291 YYU_06005 YYU_06010 IPR000836 Phosphoribosyltransferase domain YYU_06010 IPR005854 Amidophosphoribosyl transferase YYU_06010 IPR017932 Glutamine amidotransferase type 2 domain YYU_06010 IPR029055 Nucleophile aminohydrolases, N-terminal YYU_06010 IPR029057 Phosphoribosyltransferase-like YYU_06015 IPR001328 Peptidyl-tRNA hydrolase YYU_06015 IPR018171 Peptidyl-tRNA hydrolase, conserved site YYU_06015 IPR036416 YYU_06015 YYU_06020 IPR001021 Ribosomal protein L25, long-form YYU_06020 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain YYU_06020 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain YYU_06020 IPR020057 Ribosomal protein L25, beta domain YYU_06020 IPR029751 Ribosomal protein L25 YYU_06020 IPR037121 YYU_06020 YYU_06025 IPR000836 Phosphoribosyltransferase domain YYU_06025 IPR029057 Phosphoribosyltransferase-like YYU_06030 IPR003148 Regulator of K+ conductance, N-terminal YYU_06030 IPR006153 Cation/H+ exchanger YYU_06030 IPR036291 YYU_06030 YYU_06030 IPR038770 YYU_06030 YYU_06035 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YYU_06035 IPR036249 YYU_06035 YYU_06040 IPR005265 Uncharacterised protein family UPF0093 YYU_06045 IPR005475 Transketolase-like, pyrimidine-binding domain YYU_06045 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II YYU_06045 IPR029061 Thiamin diphosphate-binding fold YYU_06045 IPR033248 YYU_06045 YYU_06060 IPR002510 TldD/PmbA YYU_06060 IPR025502 TldD YYU_06060 IPR036059 YYU_06060 YYU_06065 IPR002566 Surface antigen msp4 YYU_06065 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06070 IPR002566 Surface antigen msp4 YYU_06070 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06075 IPR002566 Surface antigen msp4 YYU_06090 IPR001440 Tetratricopeptide TPR1 YYU_06090 IPR011990 Tetratricopeptide-like helical domain YYU_06090 IPR013217 Methyltransferase type 12 YYU_06090 IPR019734 Tetratricopeptide repeat YYU_06090 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like YYU_06100 IPR032677 YYU_06100 YYU_06100 IPR036144 YYU_06100 YYU_06110 IPR001576 Phosphoglycerate kinase YYU_06110 IPR015824 Phosphoglycerate kinase, N-terminal YYU_06110 IPR015911 Phosphoglycerate kinase, conserved site YYU_06110 IPR036043 YYU_06110 YYU_06115 IPR003753 Exonuclease VII, large subunit YYU_06115 IPR020579 Exonuclease VII, large subunit, C-terminal YYU_06115 IPR025824 OB-fold nucleic acid binding domain YYU_06120 IPR011723 Zinc finger/thioredoxin putative YYU_06135 IPR002566 Surface antigen msp4 YYU_06135 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06140 IPR005665 Protein-export membrane protein SecF, bacterial YYU_06140 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YYU_06140 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YYU_06140 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YYU_06145 IPR003509 Uncharacterised protein family UPF0102 YYU_06145 IPR011335 Restriction endonuclease type II-like YYU_06145 IPR011856 tRNA endonuclease-like domain YYU_06150 IPR002566 Surface antigen msp4 YYU_06150 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06155 IPR002566 Surface antigen msp4 YYU_06165 IPR000037 SsrA-binding protein YYU_06165 IPR020081 SsrA-binding protein, conserved site YYU_06165 IPR023620 Small protein B YYU_06170 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB YYU_06170 IPR017945 DHBP synthase RibB-like alpha/beta domain YYU_06175 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal YYU_06175 IPR006359 Transcription elongation factor GreA YYU_06175 IPR018151 Transcription elongation factor, GreA/GreB, conserved site YYU_06175 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal YYU_06175 IPR023459 Transcription elongation factor GreA/GreB family YYU_06175 IPR028624 Transcription elongation factor GreA/GreB YYU_06175 IPR036805 YYU_06175 YYU_06175 IPR036953 YYU_06175 YYU_06180 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YYU_06180 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YYU_06180 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain YYU_06180 IPR005294 ATPase, F1 complex, alpha subunit YYU_06180 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site YYU_06180 IPR023366 ATP synthase subunit alpha-like domain YYU_06180 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_06180 IPR036121 YYU_06180 YYU_06180 IPR038376 YYU_06180 YYU_06185 IPR000711 ATPase, OSCP/delta subunit YYU_06185 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain YYU_06190 IPR009935 Protein of unknown function DUF1467 YYU_06200 IPR011990 Tetratricopeptide-like helical domain YYU_06210 IPR003838 Permease FtsX-like YYU_06210 IPR011925 Lipoprotein releasing system, transmembrane protein, LolC/E family YYU_06210 IPR025857 MacB-like periplasmic core domain YYU_06220 IPR002566 Surface antigen msp4 YYU_06225 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE YYU_06225 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_06230 IPR006214 Bax inhibitor 1-related YYU_06235 IPR000534 Semialdehyde dehydrogenase, NAD-binding YYU_06235 IPR012280 Semialdehyde dehydrogenase, dimerisation domain YYU_06235 IPR036291 YYU_06235 YYU_06240 IPR004401 Nucleoid-associated protein YbaB YYU_06240 IPR036894 YYU_06240 YYU_06245 IPR003593 AAA+ ATPase domain YYU_06245 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal YYU_06245 IPR012763 DNA polymerase III, subunit gamma/ tau YYU_06245 IPR022754 DNA polymerase III, gamma subunit, domain III YYU_06245 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_06250 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YYU_06250 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YYU_06250 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family YYU_06250 IPR036291 YYU_06250 YYU_06255 IPR002566 Surface antigen msp4 YYU_06255 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06260 IPR002566 Surface antigen msp4 YYU_06260 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06265 IPR002566 Surface antigen msp4 YYU_06265 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06270 IPR003593 AAA+ ATPase domain YYU_06270 IPR013765 DNA recombination and repair protein RecA YYU_06270 IPR020584 DNA recombination/repair protein RecA, conserved site YYU_06270 IPR023400 DNA recombination and repair protein RecA, C-terminal YYU_06270 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_06275 IPR002566 Surface antigen msp4 YYU_06275 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06285 IPR002566 Surface antigen msp4 YYU_06285 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06290 IPR002566 Surface antigen msp4 YYU_06290 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06295 IPR002830 UbiD decarboxylyase family YYU_06300 IPR002566 Surface antigen msp4 YYU_06300 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06315 IPR019401 Zinc finger, CHCC-type YYU_06320 IPR001036 Acriflavin resistance protein YYU_06320 IPR005791 Protein translocase subunit SecD YYU_06320 IPR022645 Protein-export membrane protein SecD/SecF, bacterial YYU_06320 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site YYU_06320 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial YYU_06325 IPR001650 Helicase, C-terminal YYU_06325 IPR001943 UVR domain YYU_06325 IPR004807 UvrABC system, subunit B YYU_06325 IPR006935 Helicase/UvrB domain YYU_06325 IPR014001 Helicase, superfamily 1/2, ATP-binding domain YYU_06325 IPR024759 UvrB, YAD/RRR-motif-containing domain YYU_06325 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_06325 IPR036876 YYU_06325 YYU_06345 IPR005122 Uracil-DNA glycosylase-like YYU_06345 IPR005273 Uracil-DNA glycosylase, family 4 domain YYU_06345 IPR036895 YYU_06345 YYU_06350 IPR023635 Peptide deformylase YYU_06350 IPR036821 YYU_06350 YYU_06355 IPR002123 Phospholipid/glycerol acyltransferase YYU_06360 IPR002583 Ribosomal protein S20 YYU_06360 IPR036510 YYU_06360 YYU_06365 IPR023635 Peptide deformylase YYU_06365 IPR036821 YYU_06365 YYU_06375 IPR001640 Prolipoprotein diacylglyceryl transferase YYU_06380 IPR004268 Flagellin assembly, membrane protein MviN YYU_06435 IPR002566 Surface antigen msp4 YYU_06435 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06440 IPR002566 Surface antigen msp4 YYU_06445 IPR002566 Surface antigen msp4 YYU_06445 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06455 IPR002566 Surface antigen msp4 YYU_06455 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel YYU_06460 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC YYU_06465 IPR002524 Cation efflux protein YYU_06465 IPR027469 Cation efflux protein transmembrane domain YYU_06465 IPR036837 YYU_06465 YYU_06475 IPR003544 Cytochrome c-type biogenesis protein CcmB YYU_06480 IPR000962 Zinc finger, DksA/TraR C4-type YYU_06480 IPR037187 YYU_06480 YYU_06485 IPR002566 Surface antigen msp4 YYU_06495 IPR002566 Surface antigen msp4 YYU_06500 IPR003688 Ti-type conjugative transfer system, TraG-like YYU_06500 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_06505 IPR001482 Type II secretion system protein E YYU_06505 IPR014155 Type IV secretion system protein VirB11 YYU_06505 IPR027417 P-loop containing nucleoside triphosphate hydrolase YYU_06510 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI YYU_06515 IPR010258 Conjugal transfer, TrbG/VirB9/CagX YYU_06515 IPR014148 P-type conjugative transfer protein VirB9 YYU_06515 IPR038161 YYU_06515 YYU_06520 IPR007430 Bacterial virulence protein VirB8 YYU_06520 IPR026264 Type IV secretion system protein VirB8/PtlE YYU_06520 IPR032710 YYU_06520 YYU_06525 IPR002566 Surface antigen msp4 YYU_06535 IPR001238 DNA-binding, RecF YYU_06535 IPR003395 RecF/RecN/SMC, N-terminal YYU_06535 IPR018078 DNA-binding, RecF, conserved site YYU_06535 IPR027417 P-loop containing nucleoside triphosphate hydrolase