YYU_00005 PF00476 DNA polymerase family A YYU_00005 PF01367 5'-3' exonuclease, C-terminal SAM fold YYU_00005 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YYU_00010 PF00834 Ribulose-phosphate 3 epimerase family YYU_00015 PF02405 YYU_00015 YYU_00020 PF00005 ABC transporter YYU_00035 PF01965 DJ-1/PfpI family YYU_00040 PF00438 S-adenosylmethionine synthetase, N-terminal domain YYU_00040 PF02772 S-adenosylmethionine synthetase, central domain YYU_00040 PF02773 S-adenosylmethionine synthetase, C-terminal domain YYU_00050 PF01494 FAD binding domain YYU_00065 PF02091 Glycyl-tRNA synthetase alpha subunit YYU_00070 PF02092 YYU_00070 YYU_00070 PF05746 DALR anticodon binding domain YYU_00075 PF00226 DnaJ domain YYU_00075 PF00684 DnaJ central domain YYU_00075 PF01556 DnaJ C terminal domain YYU_00080 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YYU_00080 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YYU_00085 PF02660 YYU_00085 YYU_00090 PF02075 Crossover junction endodeoxyribonuclease RuvC YYU_00095 PF00510 Cytochrome c oxidase subunit III YYU_00100 PF01208 Uroporphyrinogen decarboxylase (URO-D) YYU_00105 PF00571 CBS domain YYU_00105 PF03471 Transporter associated domain YYU_00110 PF04586 YYU_00110 YYU_00115 PF04860 Phage portal protein YYU_00120 PF08241 Methyltransferase domain YYU_00125 PF02445 Quinolinate synthetase A protein YYU_00130 PF00037 4Fe-4S binding domain YYU_00130 PF11953 Domain of unknown function (DUF3470) YYU_00135 PF01617 YYU_00135 YYU_00145 PF01617 YYU_00145 YYU_00165 PF00579 tRNA synthetases class I (W and Y) YYU_00170 PF01025 GrpE YYU_00175 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YYU_00175 PF01872 RibD C-terminal domain YYU_00180 PF00117 Glutamine amidotransferase class-I YYU_00180 PF06418 CTP synthase N-terminus YYU_00185 PF03840 Preprotein translocase SecG subunit YYU_00190 PF00589 Phage integrase family YYU_00190 PF02899 Phage integrase, N-terminal SAM-like domain YYU_00195 PF00005 ABC transporter YYU_00200 PF00390 Malic enzyme, N-terminal domain YYU_00200 PF01515 Phosphate acetyl/butaryl transferase YYU_00200 PF03949 Malic enzyme, NAD binding domain YYU_00205 PF13502 YYU_00205 YYU_00210 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YYU_00210 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YYU_00220 PF02470 YYU_00220 YYU_00225 PF05071 YYU_00225 YYU_00230 PF03477 ATP cone domain YYU_00250 PF13343 Bacterial extracellular solute-binding protein YYU_00255 PF03966 Trm112p-like protein YYU_00260 PF00083 Sugar (and other) transporter YYU_00265 PF00886 Ribosomal protein S16 YYU_00280 PF00106 short chain dehydrogenase YYU_00285 PF00438 S-adenosylmethionine synthetase, N-terminal domain YYU_00285 PF02772 S-adenosylmethionine synthetase, central domain YYU_00285 PF02773 S-adenosylmethionine synthetase, C-terminal domain YYU_00295 PF01409 tRNA synthetases class II core domain (F) YYU_00295 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YYU_00300 PF00453 Ribosomal protein L20 YYU_00305 PF01632 Ribosomal protein L35 YYU_00310 PF06242 YYU_00310 YYU_00315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YYU_00315 PF07497 Rho termination factor, RNA-binding domain YYU_00315 PF07498 Rho termination factor, N-terminal domain YYU_00320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYU_00320 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_00325 PF00226 DnaJ domain YYU_00330 PF01106 NifU-like domain YYU_00330 PF08712 Scaffold protein Nfu/NifU N terminal YYU_00340 PF02597 ThiS family YYU_00345 PF05690 Thiazole biosynthesis protein ThiG YYU_00355 PF00749 tRNA synthetases class I (E and Q), catalytic domain YYU_00375 PF03602 Conserved hypothetical protein 95 YYU_00385 PF03547 YYU_00385 YYU_00390 PF04800 ETC complex I subunit conserved region YYU_00395 PF02609 Exonuclease VII small subunit YYU_00400 PF00085 Thioredoxin YYU_00405 PF03524 Conjugal transfer protein YYU_00410 PF00676 Dehydrogenase E1 component YYU_00415 PF00561 alpha/beta hydrolase fold YYU_00430 PF00551 Formyl transferase YYU_00435 PF00478 IMP dehydrogenase / GMP reductase domain YYU_00435 PF00571 CBS domain YYU_00440 PF01513 ATP-NAD kinase YYU_00445 PF01197 Ribosomal protein L31 YYU_00450 PF04860 Phage portal protein YYU_00455 PF00698 Acyl transferase domain YYU_00460 PF02223 Thymidylate kinase YYU_00465 PF07690 Major Facilitator Superfamily YYU_00475 PF04280 Tim44-like domain YYU_00480 PF02556 Preprotein translocase subunit SecB YYU_00485 PF13462 Thioredoxin YYU_00495 PF00675 Insulinase (Peptidase family M16) YYU_00495 PF05193 Peptidase M16 inactive domain YYU_00505 PF03060 Nitronate monooxygenase YYU_00525 PF00677 Lumazine binding domain YYU_00540 PF00270 DEAD/DEAH box helicase YYU_00540 PF00271 Helicase conserved C-terminal domain YYU_00540 PF02559 CarD-like/TRCF domain YYU_00540 PF03461 TRCF domain YYU_00550 PF00075 RNase H YYU_00555 PF13116 YYU_00555 YYU_00555 PF13502 YYU_00555 YYU_00565 PF00696 Amino acid kinase family YYU_00570 PF01765 Ribosome recycling factor YYU_00580 PF01148 Cytidylyltransferase family YYU_00605 PF01259 SAICAR synthetase YYU_00610 PF03129 Anticodon binding domain YYU_00610 PF13393 Histidyl-tRNA synthetase YYU_00615 PF13462 Thioredoxin YYU_00620 PF02628 YYU_00620 YYU_00630 PF00005 ABC transporter YYU_00640 PF12327 FtsZ family, C-terminal domain YYU_00650 PF06808 YYU_00650 YYU_00675 PF00313 'Cold-shock' DNA-binding domain YYU_00680 PF00512 His Kinase A (phospho-acceptor) domain YYU_00680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYU_00685 PF01612 3'-5' exonuclease YYU_00690 PF00533 BRCA1 C Terminus (BRCT) domain YYU_00690 PF01653 NAD-dependent DNA ligase adenylation domain YYU_00690 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YYU_00690 PF03120 NAD-dependent DNA ligase OB-fold domain YYU_00690 PF12826 Helix-hairpin-helix motif YYU_00695 PF00462 Glutaredoxin YYU_00700 PF01722 BolA-like protein YYU_00705 PF08534 Redoxin YYU_00710 PF01617 YYU_00710 YYU_00720 PF01617 YYU_00720 YYU_00725 PF01617 YYU_00725 YYU_00730 PF00625 Guanylate kinase YYU_00735 PF06808 YYU_00735 YYU_00735 PF11874 YYU_00735 YYU_00740 PF02674 YYU_00740 YYU_00745 PF01250 Ribosomal protein S6 YYU_00750 PF01084 Ribosomal protein S18 YYU_00755 PF01281 Ribosomal protein L9, N-terminal domain YYU_00755 PF03948 Ribosomal protein L9, C-terminal domain YYU_00760 PF00464 Serine hydroxymethyltransferase YYU_00765 PF01491 Frataxin-like domain YYU_00770 PF00005 ABC transporter YYU_00770 PF00664 ABC transporter transmembrane region YYU_00775 PF00890 FAD binding domain YYU_00775 PF02910 Fumarate reductase flavoprotein C-term YYU_00780 PF13085 2Fe-2S iron-sulfur cluster binding domain YYU_00780 PF13534 4Fe-4S dicluster domain YYU_00790 PF00890 FAD binding domain YYU_00790 PF02910 Fumarate reductase flavoprotein C-term YYU_00795 PF13085 2Fe-2S iron-sulfur cluster binding domain YYU_00795 PF13534 4Fe-4S dicluster domain YYU_00800 PF02511 Thymidylate synthase complementing protein YYU_00805 PF07690 Major Facilitator Superfamily YYU_00815 PF02091 Glycyl-tRNA synthetase alpha subunit YYU_00825 PF05491 Holliday junction DNA helicase ruvB C-terminus YYU_00825 PF05496 Holliday junction DNA helicase ruvB N-terminus YYU_00830 PF01330 RuvA N terminal domain YYU_00830 PF07499 RuvA, C-terminal domain YYU_00830 PF14520 Helix-hairpin-helix domain YYU_00835 PF01578 YYU_00835 YYU_00840 PF00625 Guanylate kinase YYU_00845 PF01617 YYU_00845 YYU_00850 PF01617 YYU_00850 YYU_00855 PF01617 YYU_00855 YYU_00860 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YYU_00860 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YYU_00875 PF12146 Putative lysophospholipase YYU_00880 PF00561 alpha/beta hydrolase fold YYU_00885 PF00034 Cytochrome c YYU_00890 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YYU_00895 PF00391 PEP-utilising enzyme, mobile domain YYU_00895 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YYU_00895 PF02896 PEP-utilising enzyme, TIM barrel domain YYU_00900 PF06271 YYU_00900 YYU_00905 PF13419 Haloacid dehalogenase-like hydrolase YYU_00920 PF00152 tRNA synthetases class II (D, K and N) YYU_00920 PF01336 OB-fold nucleic acid binding domain YYU_00920 PF02938 GAD domain YYU_00925 PF04972 BON domain YYU_00930 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YYU_00930 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YYU_00940 PF03799 Cell division protein FtsQ YYU_00940 PF08478 POTRA domain, FtsQ-type YYU_00945 PF00072 Response regulator receiver domain YYU_00945 PF00158 Sigma-54 interaction domain YYU_00945 PF02954 Bacterial regulatory protein, Fis family YYU_00955 PF00072 Response regulator receiver domain YYU_00960 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YYU_00960 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YYU_00965 PF00589 Phage integrase family YYU_00965 PF02899 Phage integrase, N-terminal SAM-like domain YYU_00975 PF00586 AIR synthase related protein, N-terminal domain YYU_00975 PF02769 AIR synthase related protein, C-terminal domain YYU_00980 PF10090 Uncharacterized protein conserved in bacteria (DUF2328) YYU_00990 PF00586 AIR synthase related protein, N-terminal domain YYU_00995 PF00990 GGDEF domain YYU_01000 PF02410 Oligomerisation domain YYU_01005 PF01435 Peptidase family M48 YYU_01015 PF00586 AIR synthase related protein, N-terminal domain YYU_01015 PF02769 AIR synthase related protein, C-terminal domain YYU_01025 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YYU_01030 PF00586 AIR synthase related protein, N-terminal domain YYU_01030 PF02769 AIR synthase related protein, C-terminal domain YYU_01050 PF04055 Radical SAM superfamily YYU_01050 PF06968 Biotin and Thiamin Synthesis associated domain YYU_01060 PF07310 YYU_01060 YYU_01065 PF01551 Peptidase family M23 YYU_01070 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YYU_01075 PF01134 Glucose inhibited division protein A YYU_01075 PF13932 GidA associated domain 3 YYU_01080 PF13507 CobB/CobQ-like glutamine amidotransferase domain YYU_01090 PF01617 YYU_01090 YYU_01115 PF00551 Formyl transferase YYU_01120 PF00883 Cytosol aminopeptidase family, catalytic domain YYU_01120 PF02789 Cytosol aminopeptidase family, N-terminal domain YYU_01125 PF00775 Dioxygenase YYU_01140 PF00004 ATPase family associated with various cellular activities (AAA) YYU_01140 PF02861 Clp amino terminal domain YYU_01140 PF07724 AAA domain (Cdc48 subfamily) YYU_01140 PF10431 C-terminal, D2-small domain, of ClpB protein YYU_01145 PF00106 short chain dehydrogenase YYU_01160 PF00118 TCP-1/cpn60 chaperonin family YYU_01165 PF00166 Chaperonin 10 Kd subunit YYU_01170 PF04002 RadC-like JAB domain YYU_01175 PF03099 Biotin/lipoate A/B protein ligase family YYU_01180 PF01979 Amidohydrolase family YYU_01185 PF04127 DNA / pantothenate metabolism flavoprotein YYU_01190 PF00206 Lyase YYU_01190 PF10415 Fumarase C C-terminus YYU_01200 PF02142 MGS-like domain YYU_01200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YYU_01200 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YYU_01205 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YYU_01210 PF00809 Pterin binding enzyme YYU_01220 PF00005 ABC transporter YYU_01220 PF00664 ABC transporter transmembrane region YYU_01225 PF00107 Zinc-binding dehydrogenase YYU_01225 PF08240 Alcohol dehydrogenase GroES-like domain YYU_01230 PF00580 UvrD/REP helicase N-terminal domain YYU_01230 PF13361 UvrD-like helicase C-terminal domain YYU_01235 PF13637 Ankyrin repeats (many copies) YYU_01240 PF01145 SPFH domain / Band 7 family YYU_01250 PF03969 AFG1-like ATPase YYU_01255 PF00762 Ferrochelatase YYU_01265 PF05164 Cell division protein ZapA YYU_01270 PF13747 YYU_01270 YYU_01275 PF00456 Transketolase, thiamine diphosphate binding domain YYU_01285 PF00216 Bacterial DNA-binding protein YYU_01290 PF01343 Peptidase family S49 YYU_01295 PF00575 S1 RNA binding domain YYU_01300 PF02224 Cytidylate kinase YYU_01305 PF00588 SpoU rRNA Methylase family YYU_01305 PF08032 RNA 2'-O ribose methyltransferase substrate binding YYU_01320 PF00009 Elongation factor Tu GTP binding domain YYU_01320 PF03143 Elongation factor Tu C-terminal domain YYU_01320 PF03144 Elongation factor Tu domain 2 YYU_01325 PF00338 Ribosomal protein S10p/S20e YYU_01330 PF00297 Ribosomal protein L3 YYU_01335 PF00573 Ribosomal protein L4/L1 family YYU_01340 PF00276 Ribosomal protein L23 YYU_01345 PF00181 Ribosomal Proteins L2, RNA binding domain YYU_01345 PF03947 Ribosomal Proteins L2, C-terminal domain YYU_01350 PF00203 Ribosomal protein S19 YYU_01355 PF00237 Ribosomal protein L22p/L17e YYU_01360 PF00189 Ribosomal protein S3, C-terminal domain YYU_01360 PF07650 KH domain YYU_01365 PF00252 Ribosomal protein L16p/L10e YYU_01370 PF00831 Ribosomal L29 protein YYU_01375 PF00366 Ribosomal protein S17 YYU_01380 PF00238 Ribosomal protein L14p/L23e YYU_01385 PF00467 KOW motif YYU_01385 PF17136 YYU_01385 YYU_01390 PF00281 Ribosomal protein L5 YYU_01390 PF00673 ribosomal L5P family C-terminus YYU_01395 PF00253 Ribosomal protein S14p/S29e YYU_01400 PF00410 Ribosomal protein S8 YYU_01405 PF00347 Ribosomal protein L6 YYU_01410 PF00861 Ribosomal L18p/L5e family YYU_01415 PF00333 Ribosomal protein S5, N-terminal domain YYU_01415 PF03719 Ribosomal protein S5, C-terminal domain YYU_01420 PF00828 Ribosomal protein L18e/L15 YYU_01425 PF00344 SecY translocase YYU_01430 PF00406 Adenylate kinase YYU_01435 PF00416 Ribosomal protein S13/S18 YYU_01440 PF00411 Ribosomal protein S11 YYU_01445 PF01000 RNA polymerase Rpb3/RpoA insert domain YYU_01445 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YYU_01445 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YYU_01450 PF01196 Ribosomal protein L17 YYU_01455 PF01588 Putative tRNA binding domain YYU_01455 PF03147 Ferredoxin-fold anticodon binding domain YYU_01455 PF03483 B3/4 domain YYU_01455 PF03484 tRNA synthetase B5 domain YYU_01460 PF03772 YYU_01460 YYU_01460 PF13567 YYU_01460 YYU_01465 PF01235 YYU_01465 YYU_01470 PF00825 Ribonuclease P YYU_01475 PF00468 Ribosomal protein L34 YYU_01480 PF01040 UbiA prenyltransferase family YYU_01485 PF01613 Flavin reductase like domain YYU_01495 PF00005 ABC transporter YYU_01500 PF01702 Queuine tRNA-ribosyltransferase YYU_01505 PF01783 Ribosomal L32p protein family YYU_01510 PF02504 Fatty acid synthesis protein YYU_01515 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YYU_01515 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YYU_01520 PF01617 YYU_01520 YYU_01530 PF14437 YYU_01530 YYU_01540 PF00772 DnaB-like helicase N terminal domain YYU_01540 PF03796 DnaB-like helicase C terminal domain YYU_01545 PF01266 FAD dependent oxidoreductase YYU_01550 PF02779 Transketolase, pyrimidine binding domain YYU_01565 PF00348 Polyprenyl synthetase YYU_01575 PF00317 Ribonucleotide reductase, all-alpha domain YYU_01575 PF02867 Ribonucleotide reductase, barrel domain YYU_01580 PF03652 Uncharacterised protein family (UPF0081) YYU_01595 PF00709 Adenylosuccinate synthetase YYU_01605 PF00691 OmpA family YYU_01610 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YYU_01615 PF00456 Transketolase, thiamine diphosphate binding domain YYU_01615 PF02779 Transketolase, pyrimidine binding domain YYU_01615 PF02780 Transketolase, C-terminal domain YYU_01620 PF04066 YYU_01620 YYU_01625 PF03334 YYU_01625 YYU_01630 PF13244 YYU_01630 YYU_01635 PF04039 YYU_01635 YYU_01640 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YYU_01645 PF10150 Ribonuclease E/G family YYU_01650 PF00012 Hsp70 protein YYU_01655 PF03364 Polyketide cyclase / dehydrase and lipid transport YYU_01660 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YYU_01665 PF00448 SRP54-type protein, GTPase domain YYU_01665 PF02881 SRP54-type protein, helical bundle domain YYU_01665 PF02978 Signal peptide binding domain YYU_01670 PF01926 50S ribosome-binding GTPase YYU_01670 PF07650 KH domain YYU_01675 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB YYU_01690 PF13975 YYU_01690 YYU_01695 PF00557 Metallopeptidase family M24 YYU_01695 PF01321 Creatinase/Prolidase N-terminal domain YYU_01695 PF16188 YYU_01695 YYU_01695 PF16189 YYU_01695 YYU_01700 PF02602 Uroporphyrinogen-III synthase HemD YYU_01705 PF07722 Peptidase C26 YYU_01710 PF00270 DEAD/DEAH box helicase YYU_01710 PF00271 Helicase conserved C-terminal domain YYU_01720 PF00830 Ribosomal L28 family YYU_01735 PF00849 RNA pseudouridylate synthase YYU_01745 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain YYU_01745 PF00364 Biotin-requiring enzyme YYU_01745 PF02785 Biotin carboxylase C-terminal domain YYU_01745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YYU_01760 PF04055 Radical SAM superfamily YYU_01780 PF00528 Binding-protein-dependent transport system inner membrane component YYU_01780 PF11812 YYU_01780 YYU_01785 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YYU_01785 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YYU_01790 PF05101 YYU_01790 YYU_01795 PF03135 YYU_01795 YYU_01800 PF04610 YYU_01800 YYU_01805 PF04610 YYU_01805 YYU_01810 PF04610 YYU_01810 YYU_01815 PF04610 YYU_01815 YYU_01820 PF09343 YYU_01820 YYU_01825 PF00692 dUTPase YYU_01830 PF02401 LytB protein YYU_01840 PF00117 Glutamine amidotransferase class-I YYU_01840 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YYU_01880 PF01676 Metalloenzyme superfamily YYU_01880 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YYU_01885 PF01926 50S ribosome-binding GTPase YYU_01885 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YYU_01895 PF13360 PQQ-like domain YYU_01900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYU_01900 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_01905 PF16576 YYU_01905 YYU_01910 PF01176 Translation initiation factor 1A / IF-1 YYU_01915 PF02545 Maf-like protein YYU_01920 PF00318 Ribosomal protein S2 YYU_01925 PF00889 Elongation factor TS YYU_01940 PF00950 YYU_01940 YYU_01950 PF00355 Rieske [2Fe-2S] domain YYU_01955 PF00032 Cytochrome b(C-terminal)/b6/petD YYU_01955 PF00033 Cytochrome b(N-terminal)/b6/petB YYU_01960 PF02167 Cytochrome C1 family YYU_01980 PF13609 Gram-negative porin YYU_01995 PF00749 tRNA synthetases class I (E and Q), catalytic domain YYU_02005 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YYU_02005 PF06827 Zinc finger found in FPG and IleRS YYU_02005 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YYU_02010 PF01134 Glucose inhibited division protein A YYU_02010 PF13932 GidA associated domain 3 YYU_02025 PF01039 Carboxyl transferase domain YYU_02040 PF00472 RF-1 domain YYU_02040 PF03462 PCRF domain YYU_02050 PF01926 50S ribosome-binding GTPase YYU_02055 PF00696 Amino acid kinase family YYU_02060 PF01218 Coproporphyrinogen III oxidase YYU_02065 PF00375 Sodium:dicarboxylate symporter family YYU_02075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YYU_02075 PF02403 Seryl-tRNA synthetase N-terminal domain YYU_02080 PF02646 YYU_02080 YYU_02085 PF04335 VirB8 protein YYU_02090 PF01715 IPP transferase YYU_02105 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YYU_02105 PF10531 SLBB domain YYU_02105 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YYU_02120 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YYU_02125 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YYU_02130 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YYU_02130 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YYU_02135 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YYU_02140 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains YYU_02145 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YYU_02145 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal YYU_02145 PF13288 DXP reductoisomerase C-terminal domain YYU_02155 PF04551 GcpE protein YYU_02160 PF00902 Sec-independent protein translocase protein (TatC) YYU_02165 PF00873 AcrB/AcrD/AcrF family YYU_02170 PF08529 NusA N-terminal domain YYU_02170 PF13184 NusA-like KH domain YYU_02170 PF14520 Helix-hairpin-helix domain YYU_02175 PF00009 Elongation factor Tu GTP binding domain YYU_02175 PF04760 Translation initiation factor IF-2, N-terminal region YYU_02175 PF11987 Translation-initiation factor 2 YYU_02180 PF02033 Ribosome-binding factor A YYU_02190 PF03741 YYU_02190 YYU_02195 PF00004 ATPase family associated with various cellular activities (AAA) YYU_02195 PF07724 AAA domain (Cdc48 subfamily) YYU_02195 PF10431 C-terminal, D2-small domain, of ClpB protein YYU_02200 PF00009 Elongation factor Tu GTP binding domain YYU_02200 PF00679 Elongation factor G C-terminus YYU_02200 PF03144 Elongation factor Tu domain 2 YYU_02260 PF02637 GatB domain YYU_02275 PF02699 Preprotein translocase subunit YYU_02285 PF00436 Single-strand binding protein family YYU_02290 PF00472 RF-1 domain YYU_02290 PF03462 PCRF domain YYU_02295 PF05292 Malonyl-CoA decarboxylase (MCD) YYU_02295 PF17408 YYU_02295 YYU_02300 PF02637 GatB domain YYU_02300 PF02934 GatB/GatE catalytic domain YYU_02305 PF03372 Endonuclease/Exonuclease/phosphatase family YYU_02315 PF13561 Enoyl-(Acyl carrier protein) reductase YYU_02320 PF00308 Bacterial dnaA protein YYU_02320 PF08299 Bacterial dnaA protein helix-turn-helix YYU_02320 PF11638 DnaA N-terminal domain YYU_02345 PF02637 GatB domain YYU_02355 PF00472 RF-1 domain YYU_02355 PF03462 PCRF domain YYU_02360 PF01709 Transcriptional regulator YYU_02365 PF03631 YYU_02365 YYU_02370 PF00202 Aminotransferase class-III YYU_02410 PF00923 Transaldolase YYU_02415 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YYU_02420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YYU_02420 PF02874 ATP synthase alpha/beta family, beta-barrel domain YYU_02430 PF00571 CBS domain YYU_02430 PF01769 Divalent cation transporter YYU_02430 PF03448 MgtE intracellular N domain YYU_02440 PF01728 FtsJ-like methyltransferase YYU_02450 PF01416 tRNA pseudouridine synthase YYU_02455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YYU_02455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YYU_02460 PF01728 FtsJ-like methyltransferase YYU_02465 PF03372 Endonuclease/Exonuclease/phosphatase family YYU_02475 PF00444 Ribosomal protein L36 YYU_02485 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YYU_02490 PF01713 Smr domain YYU_02495 PF01192 RNA polymerase Rpb6 YYU_02500 PF13744 Helix-turn-helix domain YYU_02510 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YYU_02515 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YYU_02520 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YYU_02530 PF01975 Survival protein SurE YYU_02540 PF03100 CcmE YYU_02545 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YYU_02550 PF01026 TatD related DNase YYU_02560 PF01026 TatD related DNase YYU_02570 PF00133 tRNA synthetases class I (I, L, M and V) YYU_02570 PF08264 Anticodon-binding domain of tRNA YYU_02570 PF09334 tRNA synthetases class I (M) YYU_02570 PF13603 Leucyl-tRNA synthetase, Domain 2 YYU_02600 PF01029 NusB family YYU_02605 PF00885 6,7-dimethyl-8-ribityllumazine synthase YYU_02610 PF02096 60Kd inner membrane protein YYU_02610 PF14849 YidC periplasmic domain YYU_02615 PF02096 60Kd inner membrane protein YYU_02615 PF14849 YidC periplasmic domain YYU_02620 PF00384 Molybdopterin oxidoreductase YYU_02625 PF01066 CDP-alcohol phosphatidyltransferase YYU_02625 PF08009 YYU_02625 YYU_02630 PF02666 YYU_02630 YYU_02635 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_02645 PF01132 Elongation factor P (EF-P) OB domain YYU_02645 PF08207 Elongation factor P (EF-P) KOW-like domain YYU_02645 PF09285 Elongation factor P, C-terminal YYU_02650 PF00459 Inositol monophosphatase family YYU_02655 PF00849 RNA pseudouridylate synthase YYU_02660 PF00072 Response regulator receiver domain YYU_02660 PF00990 GGDEF domain YYU_02665 PF02416 mttA/Hcf106 family YYU_02670 PF05088 YYU_02670 YYU_02680 PF06055 YYU_02680 YYU_02685 PF01406 tRNA synthetases class I (C) catalytic domain YYU_02685 PF09190 DALR domain YYU_02695 PF00268 Ribonucleotide reductase, small chain YYU_02700 PF00578 AhpC/TSA family YYU_02710 PF11020 YYU_02710 YYU_02715 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase YYU_02740 PF01807 CHC2 zinc finger YYU_02740 PF08275 DNA primase catalytic core, N-terminal domain YYU_02740 PF13662 Toprim domain YYU_02745 PF00488 MutS domain V YYU_02755 PF00288 GHMP kinases N terminal domain YYU_02755 PF08544 GHMP kinases C terminal YYU_02760 PF01207 Dihydrouridine synthase (Dus) YYU_02765 PF00140 Sigma-70 factor, region 1 YYU_02765 PF03979 Sigma-70 factor, region 1 YYU_02765 PF04539 Sigma-70 region 3 YYU_02765 PF04542 Sigma-70 region 2 YYU_02765 PF04545 Sigma-70, region 4 YYU_02765 PF04546 Sigma-70, non-essential region YYU_02780 PF00675 Insulinase (Peptidase family M16) YYU_02785 PF03091 CutA1 divalent ion tolerance protein YYU_02790 PF00072 Response regulator receiver domain YYU_02790 PF00512 His Kinase A (phospho-acceptor) domain YYU_02790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYU_02795 PF01596 O-methyltransferase YYU_02810 PF13667 ThiC-associated domain YYU_02815 PF01256 Carbohydrate kinase YYU_02815 PF03853 YjeF-related protein N-terminus YYU_02845 PF01131 DNA topoisomerase YYU_02845 PF01396 YYU_02845 YYU_02845 PF01751 Toprim domain YYU_02845 PF13368 YYU_02845 YYU_02850 PF01964 ThiC family YYU_02850 PF13667 ThiC-associated domain YYU_02880 PF13489 Methyltransferase domain YYU_02885 PF01921 tRNA synthetases class I (K) YYU_02895 PF13145 PPIC-type PPIASE domain YYU_02895 PF13624 SurA N-terminal domain YYU_02905 PF00814 Glycoprotease family YYU_02910 PF00375 Sodium:dicarboxylate symporter family YYU_02915 PF00375 Sodium:dicarboxylate symporter family YYU_02925 PF04085 rod shape-determining protein MreC YYU_02945 PF05258 YYU_02945 YYU_02955 PF00398 Ribosomal RNA adenine dimethylase YYU_02965 PF00121 Triosephosphate isomerase YYU_02970 PF16868 YYU_02970 YYU_02975 PF00814 Glycoprotease family YYU_02980 PF06271 YYU_02980 YYU_02985 PF02152 Dihydroneopterin aldolase YYU_02990 PF00056 lactate/malate dehydrogenase, NAD binding domain YYU_02990 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YYU_03010 PF05135 Phage gp6-like head-tail connector protein YYU_03020 PF06199 YYU_03020 YYU_03055 PF02502 Ribose/Galactose Isomerase YYU_03065 PF06723 MreB/Mbl protein YYU_03070 PF01648 4'-phosphopantetheinyl transferase superfamily YYU_03075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YYU_03075 PF03129 Anticodon binding domain YYU_03090 PF01467 Cytidylyltransferase YYU_03130 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_03135 PF00578 AhpC/TSA family YYU_03135 PF10417 C-terminal domain of 1-Cys peroxiredoxin YYU_03140 PF00155 Aminotransferase class I and II YYU_03145 PF01617 YYU_03145 YYU_03150 PF01617 YYU_03150 YYU_03155 PF01617 YYU_03155 YYU_03170 PF13561 Enoyl-(Acyl carrier protein) reductase YYU_03175 PF00171 Aldehyde dehydrogenase family YYU_03175 PF01619 Proline dehydrogenase YYU_03175 PF14850 DNA-binding domain of Proline dehydrogenase YYU_03185 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YYU_03190 PF00266 Aminotransferase class-V YYU_03190 PF02082 Transcriptional regulator YYU_03195 PF00266 Aminotransferase class-V YYU_03200 PF01592 NifU-like N terminal domain YYU_03205 PF01521 Iron-sulphur cluster biosynthesis YYU_03215 PF00012 Hsp70 protein YYU_03220 PF00111 2Fe-2S iron-sulfur cluster binding domain YYU_03240 PF13547 YYU_03240 YYU_03240 PF13550 YYU_03240 YYU_03255 PF03918 Cytochrome C biogenesis protein YYU_03260 PF09356 YYU_03260 YYU_03260 PF09931 YYU_03260 YYU_03275 PF01795 MraW methylase family YYU_03290 PF01812 5-formyltetrahydrofolate cyclo-ligase family YYU_03295 PF01018 GTP1/OBG YYU_03295 PF01926 50S ribosome-binding GTPase YYU_03300 PF00113 Enolase, C-terminal TIM barrel domain YYU_03300 PF03952 Enolase, N-terminal domain YYU_03310 PF00829 Ribosomal prokaryotic L21 protein YYU_03315 PF01016 Ribosomal L27 protein YYU_03325 PF00750 tRNA synthetases class I (R) YYU_03325 PF03485 Arginyl tRNA synthetase N terminal domain YYU_03325 PF05746 DALR anticodon binding domain YYU_03335 PF01523 Putative modulator of DNA gyrase YYU_03340 PF01227 GTP cyclohydrolase I YYU_03345 PF00231 ATP synthase YYU_03360 PF00146 NADH dehydrogenase YYU_03365 PF00384 Molybdopterin oxidoreductase YYU_03365 PF09326 YYU_03365 YYU_03365 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YYU_03365 PF13510 2Fe-2S iron-sulfur cluster binding domain YYU_03380 PF00204 DNA gyrase B YYU_03380 PF00986 DNA gyrase B subunit, carboxyl terminus YYU_03380 PF01751 Toprim domain YYU_03380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYU_03440 PF00929 Exonuclease YYU_03445 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin YYU_03450 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YYU_03455 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_03460 PF00586 AIR synthase related protein, N-terminal domain YYU_03460 PF02769 AIR synthase related protein, C-terminal domain YYU_03465 PF02565 Recombination protein O C terminal YYU_03465 PF11967 Recombination protein O N terminal YYU_03485 PF00023 Ankyrin repeat YYU_03485 PF12796 Ankyrin repeats (3 copies) YYU_03505 PF01565 FAD binding domain YYU_03505 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YYU_03510 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YYU_03510 PF03900 Porphobilinogen deaminase, C-terminal domain YYU_03515 PF08245 Mur ligase middle domain YYU_03520 PF01425 Amidase YYU_03525 PF02441 Flavoprotein YYU_03555 PF01078 Magnesium chelatase, subunit ChlI YYU_03555 PF13335 YYU_03555 YYU_03555 PF13541 Subunit ChlI of Mg-chelatase YYU_03570 PF04542 Sigma-70 region 2 YYU_03570 PF04545 Sigma-70, region 4 YYU_03575 PF17289 YYU_03575 YYU_03590 PF00009 Elongation factor Tu GTP binding domain YYU_03590 PF00679 Elongation factor G C-terminus YYU_03590 PF03144 Elongation factor Tu domain 2 YYU_03590 PF06421 GTP-binding protein LepA C-terminus YYU_03595 PF08241 Methyltransferase domain YYU_03600 PF00013 KH domain YYU_03600 PF00575 S1 RNA binding domain YYU_03600 PF01138 3' exoribonuclease family, domain 1 YYU_03600 PF03725 3' exoribonuclease family, domain 2 YYU_03600 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YYU_03605 PF00312 Ribosomal protein S15 YYU_03610 PF01509 TruB family pseudouridylate synthase (N terminal domain) YYU_03610 PF16198 YYU_03610 YYU_03615 PF06723 MreB/Mbl protein YYU_03635 PF04386 Stringent starvation protein B YYU_03655 PF01121 Dephospho-CoA kinase YYU_03660 PF01300 Telomere recombination YYU_03665 PF13177 DNA polymerase III, delta subunit YYU_03670 PF00216 Bacterial DNA-binding protein YYU_03685 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YYU_03690 PF01467 Cytidylyltransferase YYU_03705 PF04452 RNA methyltransferase YYU_03710 PF00578 AhpC/TSA family YYU_03715 PF00133 tRNA synthetases class I (I, L, M and V) YYU_03715 PF08264 Anticodon-binding domain of tRNA YYU_03730 PF12838 4Fe-4S dicluster domain YYU_03735 PF00717 Peptidase S24-like YYU_03740 PF01521 Iron-sulphur cluster biosynthesis YYU_03780 PF00231 ATP synthase YYU_03785 PF01227 GTP cyclohydrolase I YYU_03925 PF00083 Sugar (and other) transporter YYU_03935 PF00490 Delta-aminolevulinic acid dehydratase YYU_03940 PF02540 NAD synthase YYU_03955 PF00488 MutS domain V YYU_03955 PF01624 MutS domain I YYU_03955 PF05188 MutS domain II YYU_03955 PF05190 MutS family domain IV YYU_03955 PF05192 MutS domain III YYU_03965 PF01230 HIT domain YYU_03970 PF05065 Phage capsid family YYU_03980 PF00676 Dehydrogenase E1 component YYU_03980 PF02779 Transketolase, pyrimidine binding domain YYU_03980 PF16870 YYU_03980 YYU_03990 PF00206 Lyase YYU_03990 PF10397 Adenylosuccinate lyase C-terminus YYU_04020 PF03099 Biotin/lipoate A/B protein ligase family YYU_04040 PF00919 Uncharacterized protein family UPF0004 YYU_04040 PF04055 Radical SAM superfamily YYU_04065 PF01541 GIY-YIG catalytic domain YYU_04065 PF08459 UvrC Helix-hairpin-helix N-terminal YYU_04065 PF14520 Helix-hairpin-helix domain YYU_04080 PF00183 Hsp90 protein YYU_04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYU_04090 PF00083 Sugar (and other) transporter YYU_04100 PF00633 Helix-hairpin-helix motif YYU_04100 PF00730 HhH-GPD superfamily base excision DNA repair protein YYU_04100 PF10576 Iron-sulfur binding domain of endonuclease III YYU_04105 PF00521 DNA gyrase/topoisomerase IV, subunit A YYU_04105 PF03989 DNA gyrase C-terminal domain, beta-propeller YYU_04120 PF00580 UvrD/REP helicase N-terminal domain YYU_04120 PF13361 UvrD-like helicase C-terminal domain YYU_04145 PF03054 tRNA methyl transferase YYU_04155 PF03232 YYU_04155 YYU_04225 PF02600 Disulfide bond formation protein DsbB YYU_04235 PF00471 Ribosomal protein L33 YYU_04250 PF12796 Ankyrin repeats (3 copies) YYU_04250 PF13606 Ankyrin repeat YYU_04255 PF00550 Phosphopantetheine attachment site YYU_04260 PF00109 Beta-ketoacyl synthase, N-terminal domain YYU_04260 PF02801 Beta-ketoacyl synthase, C-terminal domain YYU_04275 PF02481 DNA recombination-mediator protein A YYU_04300 PF01617 YYU_04300 YYU_04305 PF01119 DNA mismatch repair protein, C-terminal domain YYU_04305 PF08676 MutL C terminal dimerisation domain YYU_04305 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYU_04310 PF01618 YYU_04310 YYU_04325 PF00512 His Kinase A (phospho-acceptor) domain YYU_04325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYU_04330 PF00202 Aminotransferase class-III YYU_04370 PF01580 FtsK/SpoIIIE family YYU_04370 PF09397 Ftsk gamma domain YYU_04370 PF13491 YYU_04370 YYU_04375 PF02325 YYU_04375 YYU_04380 PF00571 CBS domain YYU_04380 PF01595 YYU_04380 YYU_04380 PF03471 Transporter associated domain YYU_04385 PF02581 Thiamine monophosphate synthase/TENI YYU_04390 PF03618 YYU_04390 YYU_04395 PF00581 Rhodanese-like domain YYU_04405 PF01391 Collagen triple helix repeat (20 copies) YYU_04410 PF00551 Formyl transferase YYU_04410 PF02911 Formyl transferase, C-terminal domain YYU_04425 PF00004 ATPase family associated with various cellular activities (AAA) YYU_04425 PF02190 ATP-dependent protease La (LON) domain YYU_04425 PF05362 Lon protease (S16) C-terminal proteolytic domain YYU_04430 PF06689 ClpX C4-type zinc finger YYU_04430 PF07724 AAA domain (Cdc48 subfamily) YYU_04430 PF10431 C-terminal, D2-small domain, of ClpB protein YYU_04435 PF00574 Clp protease YYU_04455 PF04608 Phosphatidylglycerophosphatase A YYU_04460 PF00583 Acetyltransferase (GNAT) family YYU_04470 PF04384 Iron-sulphur cluster assembly YYU_04475 PF00155 Aminotransferase class I and II YYU_04480 PF01617 YYU_04480 YYU_04485 PF01617 YYU_04485 YYU_04495 PF01297 Periplasmic solute binding protein family YYU_04500 PF00005 ABC transporter YYU_04505 PF03109 YYU_04505 YYU_04510 PF11412 Disulphide bond corrector protein DsbC YYU_04515 PF00005 ABC transporter YYU_04520 PF02416 mttA/Hcf106 family YYU_04525 PF02132 RecR protein YYU_04525 PF13662 Toprim domain YYU_04530 PF00163 Ribosomal protein S4/S9 N-terminal domain YYU_04530 PF01479 S4 domain YYU_04550 PF08543 Phosphomethylpyrimidine kinase YYU_04555 PF00308 Bacterial dnaA protein YYU_04560 PF01594 YYU_04560 YYU_04580 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YYU_04590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YYU_04595 PF02811 PHP domain YYU_04595 PF07733 Bacterial DNA polymerase III alpha subunit YYU_04595 PF14579 Helix-hairpin-helix motif YYU_04600 PF01722 BolA-like protein YYU_04625 PF01243 Pyridoxamine 5'-phosphate oxidase YYU_04625 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YYU_04635 PF02230 Phospholipase/Carboxylesterase YYU_04640 PF01327 Polypeptide deformylase YYU_04645 PF01180 Dihydroorotate dehydrogenase YYU_04650 PF03309 Type III pantothenate kinase YYU_04655 PF01899 YYU_04655 YYU_04660 PF00155 Aminotransferase class I and II YYU_04665 PF01617 YYU_04665 YYU_04675 PF01617 YYU_04675 YYU_04690 PF01351 Ribonuclease HII YYU_04695 PF00623 RNA polymerase Rpb1, domain 2 YYU_04695 PF04983 RNA polymerase Rpb1, domain 3 YYU_04695 PF04997 RNA polymerase Rpb1, domain 1 YYU_04695 PF04998 RNA polymerase Rpb1, domain 5 YYU_04695 PF05000 RNA polymerase Rpb1, domain 4 YYU_04700 PF00562 RNA polymerase Rpb2, domain 6 YYU_04700 PF04560 RNA polymerase Rpb2, domain 7 YYU_04700 PF04561 RNA polymerase Rpb2, domain 2 YYU_04700 PF04563 RNA polymerase beta subunit YYU_04700 PF04565 RNA polymerase Rpb2, domain 3 YYU_04700 PF10385 RNA polymerase beta subunit external 1 domain YYU_04705 PF00542 Ribosomal protein L7/L12 C-terminal domain YYU_04710 PF00466 Ribosomal protein L10 YYU_04715 PF00687 Ribosomal protein L1p/L10e family YYU_04720 PF00298 Ribosomal protein L11, RNA binding domain YYU_04720 PF03946 Ribosomal protein L11, N-terminal domain YYU_04725 PF02357 Transcription termination factor nusG YYU_04730 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YYU_04740 PF00009 Elongation factor Tu GTP binding domain YYU_04740 PF03143 Elongation factor Tu C-terminal domain YYU_04740 PF03144 Elongation factor Tu domain 2 YYU_04745 PF00009 Elongation factor Tu GTP binding domain YYU_04745 PF00679 Elongation factor G C-terminus YYU_04745 PF03144 Elongation factor Tu domain 2 YYU_04745 PF03764 Elongation factor G, domain IV YYU_04745 PF14492 Elongation Factor G, domain II YYU_04750 PF00177 Ribosomal protein S7p/S5e YYU_04755 PF00164 Ribosomal protein S12/S23 YYU_04760 PF00753 Metallo-beta-lactamase superfamily YYU_04760 PF07521 RNA-metabolising metallo-beta-lactamase YYU_04765 PF04052 TolB amino-terminal domain YYU_04765 PF07676 WD40-like Beta Propeller Repeat YYU_04790 PF08511 COQ9 YYU_04795 PF13437 HlyD family secretion protein YYU_04800 PF00528 Binding-protein-dependent transport system inner membrane component YYU_04805 PF03060 Nitronate monooxygenase YYU_04810 PF02630 SCO1/SenC YYU_04815 PF12849 PBP superfamily domain YYU_04820 PF01165 Ribosomal protein S21 YYU_04825 PF00549 CoA-ligase YYU_04825 PF08442 ATP-grasp domain YYU_04830 PF00549 CoA-ligase YYU_04830 PF02629 CoA binding domain YYU_04850 PF01171 PP-loop family YYU_04860 PF01411 tRNA synthetases class II (A) YYU_04860 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YYU_04865 PF00528 Binding-protein-dependent transport system inner membrane component YYU_04870 PF00120 Glutamine synthetase, catalytic domain YYU_04875 PF12706 Beta-lactamase superfamily domain YYU_04910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYU_04910 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_04915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YYU_04915 PF07497 Rho termination factor, RNA-binding domain YYU_04915 PF07498 Rho termination factor, N-terminal domain YYU_04920 PF00227 Proteasome subunit YYU_04925 PF00004 ATPase family associated with various cellular activities (AAA) YYU_04925 PF07724 AAA domain (Cdc48 subfamily) YYU_04925 PF10431 C-terminal, D2-small domain, of ClpB protein YYU_04930 PF01209 ubiE/COQ5 methyltransferase family YYU_04935 PF01617 YYU_04935 YYU_04940 PF01617 YYU_04940 YYU_04955 PF00133 tRNA synthetases class I (I, L, M and V) YYU_04955 PF09334 tRNA synthetases class I (M) YYU_04965 PF01617 YYU_04965 YYU_04980 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YYU_04980 PF02790 Cytochrome C oxidase subunit II, transmembrane domain YYU_04985 PF00115 Cytochrome C and Quinol oxidase polypeptide I YYU_04990 PF01040 UbiA prenyltransferase family YYU_04995 PF13525 Outer membrane lipoprotein YYU_05000 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YYU_05000 PF02843 Phosphoribosylglycinamide synthetase, C domain YYU_05000 PF02844 Phosphoribosylglycinamide synthetase, N domain YYU_05005 PF02699 Preprotein translocase subunit YYU_05025 PF01171 PP-loop family YYU_05040 PF00712 DNA polymerase III beta subunit, N-terminal domain YYU_05040 PF02767 DNA polymerase III beta subunit, central domain YYU_05040 PF02768 DNA polymerase III beta subunit, C-terminal domain YYU_05045 PF01612 3'-5' exonuclease YYU_05050 PF00072 Response regulator receiver domain YYU_05050 PF00486 Transcriptional regulatory protein, C terminal YYU_05055 PF07022 Bacteriophage CI repressor helix-turn-helix domain YYU_05060 PF00719 Inorganic pyrophosphatase YYU_05090 PF00380 Ribosomal protein S9/S16 YYU_05095 PF00572 Ribosomal protein L13 YYU_05100 PF02321 Outer membrane efflux protein YYU_05110 PF10609 ParA/MinD ATPase like YYU_05115 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YYU_05115 PF14572 Phosphoribosyl synthetase-associated domain YYU_05120 PF02686 Glu-tRNAGln amidotransferase C subunit YYU_05130 PF01617 YYU_05130 YYU_05135 PF01617 YYU_05135 YYU_05145 PF00330 Aconitase family (aconitate hydratase) YYU_05145 PF00694 Aconitase C-terminal domain YYU_05150 PF01617 YYU_05150 YYU_05155 PF02222 ATP-grasp domain YYU_05160 PF04379 Protein of unknown function (DUF525) YYU_05180 PF01617 YYU_05180 YYU_05185 PF01617 YYU_05185 YYU_05205 PF03135 YYU_05205 YYU_05210 PF04956 YYU_05210 YYU_05215 PF04956 YYU_05215 YYU_05220 PF04956 YYU_05220 YYU_05225 PF04956 YYU_05225 YYU_05235 PF04956 YYU_05235 YYU_05240 PF04956 YYU_05240 YYU_05275 PF04956 YYU_05275 YYU_05285 PF01145 SPFH domain / Band 7 family YYU_05290 PF01145 SPFH domain / Band 7 family YYU_05295 PF00595 PDZ domain (Also known as DHR or GLGF) YYU_05295 PF13180 PDZ domain YYU_05295 PF13365 Trypsin-like peptidase domain YYU_05300 PF00035 Double-stranded RNA binding motif YYU_05300 PF14622 Ribonuclease-III-like YYU_05305 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 YYU_05315 PF01617 YYU_05315 YYU_05330 PF01617 YYU_05330 YYU_05345 PF00675 Insulinase (Peptidase family M16) YYU_05345 PF05193 Peptidase M16 inactive domain YYU_05350 PF00675 Insulinase (Peptidase family M16) YYU_05350 PF05193 Peptidase M16 inactive domain YYU_05355 PF01252 YYU_05355 YYU_05360 PF01687 Riboflavin kinase YYU_05360 PF06574 FAD synthetase YYU_05365 PF00462 Glutaredoxin YYU_05370 PF01617 YYU_05370 YYU_05375 PF02491 SHS2 domain inserted in FTSA YYU_05375 PF14450 Cell division protein FtsA YYU_05380 PF01368 DHH family YYU_05380 PF02272 DHHA1 domain YYU_05385 PF00180 Isocitrate/isopropylmalate dehydrogenase YYU_05395 PF01617 YYU_05395 YYU_05400 PF01617 YYU_05400 YYU_05405 PF00805 Pentapeptide repeats (8 copies) YYU_05405 PF13599 Pentapeptide repeats (9 copies) YYU_05410 PF02104 YYU_05410 YYU_05415 PF00156 Phosphoribosyl transferase domain YYU_05420 PF00899 ThiF family YYU_05425 PF00462 Glutaredoxin YYU_05430 PF01617 YYU_05430 YYU_05435 PF01617 YYU_05435 YYU_05440 PF01043 SecA preprotein cross-linking domain YYU_05440 PF02810 SEC-C motif YYU_05440 PF07516 SecA Wing and Scaffold domain YYU_05440 PF07517 SecA DEAD-like domain YYU_05445 PF00004 ATPase family associated with various cellular activities (AAA) YYU_05445 PF01434 Peptidase family M41 YYU_05460 PF02386 Cation transport protein YYU_05465 PF02491 SHS2 domain inserted in FTSA YYU_05465 PF14450 Cell division protein FtsA YYU_05475 PF01617 YYU_05475 YYU_05490 PF02326 YYU_05490 YYU_05495 PF00137 ATP synthase subunit C YYU_05500 PF00119 ATP synthase A chain YYU_05505 PF13685 Iron-containing alcohol dehydrogenase YYU_05510 PF01617 YYU_05510 YYU_05515 PF01617 YYU_05515 YYU_05525 PF00132 Bacterial transferase hexapeptide (six repeats) YYU_05530 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YYU_05530 PF00364 Biotin-requiring enzyme YYU_05535 PF00557 Metallopeptidase family M24 YYU_05540 PF05175 Methyltransferase small domain YYU_05545 PF01617 YYU_05545 YYU_05560 PF00115 Cytochrome C and Quinol oxidase polypeptide I YYU_05565 PF01066 CDP-alcohol phosphatidyltransferase YYU_05570 PF01808 AICARFT/IMPCHase bienzyme YYU_05570 PF02142 MGS-like domain YYU_05575 PF07977 FabA-like domain YYU_05580 PF03938 Outer membrane protein (OmpH-like) YYU_05585 PF01103 Surface antigen YYU_05585 PF07244 Surface antigen variable number repeat YYU_05590 PF02163 Peptidase family M50 YYU_05595 PF03937 Flavinator of succinate dehydrogenase YYU_05600 PF13899 Thioredoxin-like YYU_05605 PF00768 D-alanyl-D-alanine carboxypeptidase YYU_05605 PF07943 Penicillin-binding protein 5, C-terminal domain YYU_05610 PF01617 YYU_05610 YYU_05615 PF01743 Poly A polymerase head domain YYU_05615 PF12627 Probable RNA and SrmB- binding site of polymerase A YYU_05620 PF00334 Nucleoside diphosphate kinase YYU_05625 PF01381 Helix-turn-helix YYU_05630 PF01617 YYU_05630 YYU_05635 PF01617 YYU_05635 YYU_05640 PF01617 YYU_05640 YYU_05645 PF00154 recA bacterial DNA recombination protein YYU_05650 PF00133 tRNA synthetases class I (I, L, M and V) YYU_05650 PF08264 Anticodon-binding domain of tRNA YYU_05660 PF01617 YYU_05660 YYU_05665 PF00448 SRP54-type protein, GTPase domain YYU_05670 PF13500 AAA domain YYU_05675 PF01617 YYU_05675 YYU_05680 PF01617 YYU_05680 YYU_05685 PF08886 Glutamate-cysteine ligase YYU_05690 PF00285 Citrate synthase YYU_05695 PF00117 Glutamine amidotransferase class-I YYU_05695 PF00958 GMP synthase C terminal domain YYU_05710 PF01617 YYU_05710 YYU_05715 PF01617 YYU_05715 YYU_05720 PF01617 YYU_05720 YYU_05730 PF01617 YYU_05730 YYU_05735 PF01617 YYU_05735 YYU_05740 PF00155 Aminotransferase class I and II YYU_05745 PF00579 tRNA synthetases class I (W and Y) YYU_05755 PF00120 Glutamine synthetase, catalytic domain YYU_05755 PF03951 Glutamine synthetase, beta-Grasp domain YYU_05760 PF00348 Polyprenyl synthetase YYU_05765 PF01617 YYU_05765 YYU_05770 PF01617 YYU_05770 YYU_05785 PF06144 DNA polymerase III, delta subunit YYU_05790 PF01617 YYU_05790 YYU_05800 PF01617 YYU_05800 YYU_05805 PF01617 YYU_05805 YYU_05810 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YYU_05810 PF00364 Biotin-requiring enzyme YYU_05810 PF02817 e3 binding domain YYU_05815 PF01791 DeoC/LacD family aldolase YYU_05840 PF00707 Translation initiation factor IF-3, C-terminal domain YYU_05840 PF05198 Translation initiation factor IF-3, N-terminal domain YYU_05845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YYU_05845 PF03129 Anticodon binding domain YYU_05845 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YYU_05850 PF02464 Competence-damaged protein YYU_05855 PF01245 Ribosomal protein L19 YYU_05860 PF01746 tRNA (Guanine-1)-methyltransferase YYU_05865 PF01782 RimM N-terminal domain YYU_05870 PF01617 YYU_05870 YYU_05875 PF01571 Aminomethyltransferase folate-binding domain YYU_05880 PF01578 YYU_05880 YYU_05880 PF16327 YYU_05880 YYU_05885 PF01617 YYU_05885 YYU_05890 PF01617 YYU_05890 YYU_05895 PF01617 YYU_05895 YYU_05900 PF02542 YgbB family YYU_05905 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YYU_05915 PF00731 AIR carboxylase YYU_05920 PF00578 AhpC/TSA family YYU_05925 PF00216 Bacterial DNA-binding protein YYU_05930 PF13411 MerR HTH family regulatory protein YYU_05945 PF01926 50S ribosome-binding GTPase YYU_05945 PF06071 Protein of unknown function (DUF933) YYU_05955 PF01617 YYU_05955 YYU_05960 PF01926 50S ribosome-binding GTPase YYU_05960 PF10396 GTP-binding protein TrmE N-terminus YYU_05960 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE YYU_05965 PF02130 Uncharacterized protein family UPF0054 YYU_05970 PF01878 EVE domain YYU_05975 PF00091 Tubulin/FtsZ family, GTPase domain YYU_05975 PF12327 FtsZ family, C-terminal domain YYU_05995 PF02441 Flavoprotein YYU_06000 PF00270 DEAD/DEAH box helicase YYU_06000 PF00271 Helicase conserved C-terminal domain YYU_06000 PF17191 YYU_06000 YYU_06005 PF01370 NAD dependent epimerase/dehydratase family YYU_06010 PF00156 Phosphoribosyl transferase domain YYU_06010 PF13537 Glutamine amidotransferase domain YYU_06015 PF01195 Peptidyl-tRNA hydrolase YYU_06020 PF01386 Ribosomal L25p family YYU_06020 PF14693 Ribosomal protein TL5, C-terminal domain YYU_06025 PF00156 Phosphoribosyl transferase domain YYU_06030 PF00999 Sodium/hydrogen exchanger family YYU_06030 PF02254 TrkA-N domain YYU_06035 PF00578 AhpC/TSA family YYU_06040 PF03653 YYU_06040 YYU_06045 PF02779 Transketolase, pyrimidine binding domain YYU_06045 PF02780 Transketolase, C-terminal domain YYU_06060 PF01523 Putative modulator of DNA gyrase YYU_06065 PF01617 YYU_06065 YYU_06070 PF01617 YYU_06070 YYU_06075 PF01617 YYU_06075 YYU_06090 PF00515 Tetratricopeptide repeat YYU_06090 PF08242 Methyltransferase domain YYU_06100 PF00925 GTP cyclohydrolase II YYU_06110 PF00162 Phosphoglycerate kinase YYU_06115 PF02601 YYU_06115 YYU_06115 PF13742 YYU_06115 YYU_06120 PF13717 YYU_06120 YYU_06135 PF01617 YYU_06135 YYU_06140 PF02355 Protein export membrane protein YYU_06140 PF07549 SecD/SecF GG Motif YYU_06145 PF02021 Uncharacterised protein family UPF0102 YYU_06150 PF01617 YYU_06150 YYU_06155 PF01617 YYU_06155 YYU_06165 PF01668 SmpB protein YYU_06170 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YYU_06175 PF01272 Transcription elongation factor, GreA/GreB, C-term YYU_06175 PF03449 Transcription elongation factor, N-terminal YYU_06180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YYU_06180 PF00306 ATP synthase alpha/beta chain, C terminal domain YYU_06180 PF02874 ATP synthase alpha/beta family, beta-barrel domain YYU_06185 PF00213 ATP synthase delta (OSCP) subunit YYU_06190 PF07330 YYU_06190 YYU_06210 PF02687 YYU_06210 YYU_06210 PF12704 MacB-like periplasmic core domain YYU_06220 PF01617 YYU_06220 YYU_06225 PF02367 Uncharacterised P-loop hydrolase UPF0079 YYU_06230 PF01027 Inhibitor of apoptosis-promoting Bax1 YYU_06235 PF01118 Semialdehyde dehydrogenase, NAD binding domain YYU_06235 PF02774 Semialdehyde dehydrogenase, dimerisation domain YYU_06240 PF02575 YbaB/EbfC DNA-binding family YYU_06245 PF12169 DNA polymerase III subunits gamma and tau domain III YYU_06245 PF13177 DNA polymerase III, delta subunit YYU_06250 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YYU_06250 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YYU_06255 PF01617 YYU_06255 YYU_06260 PF01617 YYU_06260 YYU_06265 PF01617 YYU_06265 YYU_06270 PF00154 recA bacterial DNA recombination protein YYU_06275 PF01617 YYU_06275 YYU_06285 PF01617 YYU_06285 YYU_06290 PF01617 YYU_06290 YYU_06295 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YYU_06300 PF01617 YYU_06300 YYU_06315 PF10276 Zinc-finger domain YYU_06320 PF02355 Protein export membrane protein YYU_06320 PF07549 SecD/SecF GG Motif YYU_06325 PF00271 Helicase conserved C-terminal domain YYU_06325 PF02151 UvrB/uvrC motif YYU_06325 PF04851 Type III restriction enzyme, res subunit YYU_06325 PF12344 Ultra-violet resistance protein B YYU_06345 PF03167 Uracil DNA glycosylase superfamily YYU_06350 PF01327 Polypeptide deformylase YYU_06355 PF01553 Acyltransferase YYU_06360 PF01649 Ribosomal protein S20 YYU_06365 PF01327 Polypeptide deformylase YYU_06375 PF01790 YYU_06375 YYU_06380 PF03023 YYU_06380 YYU_06435 PF01617 YYU_06435 YYU_06440 PF01617 YYU_06440 YYU_06445 PF01617 YYU_06445 YYU_06455 PF01617 YYU_06455 YYU_06460 PF05494 Toluene tolerance, Ttg2 YYU_06465 PF01545 Cation efflux family YYU_06475 PF03379 YYU_06475 YYU_06480 PF01258 Prokaryotic dksA/traR C4-type zinc finger YYU_06485 PF01617 YYU_06485 YYU_06495 PF01617 YYU_06495 YYU_06500 PF02534 Type IV secretory system Conjugative DNA transfer YYU_06505 PF00437 Type II/IV secretion system protein YYU_06510 PF03743 Bacterial conjugation TrbI-like protein YYU_06515 PF03524 Conjugal transfer protein YYU_06520 PF04335 VirB8 protein YYU_06525 PF01617 YYU_06525 YYU_06535 PF02463 RecF/RecN/SMC N terminal domain