YYU_00005 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YYU_00005 SM00475 5'-3' exonuclease YYU_00005 SM00482 DNA polymerase A domain YYU_00020 SM00382 ATPases associated with a variety of cellular activities YYU_00075 SM00271 DnaJ molecular chaperone homology domain YYU_00085 SM01207 YYU_00085 YYU_00105 SM01091 Transporter associated domain YYU_00195 SM00382 ATPases associated with a variety of cellular activities YYU_00200 SM00919 Malic enzyme, NAD binding domain YYU_00200 SM01274 YYU_00200 YYU_00315 SM00357 Cold shock protein domain YYU_00315 SM00382 ATPases associated with a variety of cellular activities YYU_00315 SM00959 Rho termination factor, N-terminal domain YYU_00325 SM00271 DnaJ molecular chaperone homology domain YYU_00330 SM00932 Scaffold protein Nfu/NifU N terminal YYU_00435 SM00116 Domain in cystathionine beta-synthase and other proteins. YYU_00435 SM01240 YYU_00435 YYU_00455 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YYU_00475 SM00978 YYU_00475 YYU_00540 SM00487 DEAD-like helicases superfamily YYU_00540 SM00490 helicase superfamily c-terminal domain YYU_00540 SM00982 YYU_00540 YYU_00540 SM01058 CarD-like/TRCF domain YYU_00640 SM00865 Tubulin/FtsZ family, C-terminal domain YYU_00675 SM00357 Cold shock protein domain YYU_00680 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YYU_00680 SM00387 Histidine kinase-like ATPases YYU_00680 SM00388 His Kinase A (phosphoacceptor) domain YYU_00685 SM00474 3'-5' exonuclease YYU_00690 SM00292 breast cancer carboxy-terminal domain YYU_00690 SM00532 Ligase N family YYU_00765 SM01219 YYU_00765 YYU_00770 SM00382 ATPases associated with a variety of cellular activities YYU_00825 SM00382 ATPases associated with a variety of cellular activities YYU_00840 SM00072 Guanylate kinase homologues. YYU_00925 SM00749 bacterial OsmY and nodulation domain YYU_00945 SM00382 ATPases associated with a variety of cellular activities YYU_00945 SM00448 cheY-homologous receiver domain YYU_01050 SM00729 Elongator protein 3, MiaB family, Radical SAM YYU_01050 SM00876 Biotin and Thiamin Synthesis associated domain YYU_01075 SM01228 YYU_01075 YYU_01080 SM01211 YYU_01080 YYU_01140 SM00382 ATPases associated with a variety of cellular activities YYU_01140 SM01086 C-terminal, D2-small domain, of ClpB protein YYU_01165 SM00883 Chaperonin 10 Kd subunit YYU_01200 SM00851 MGS-like domain YYU_01200 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YYU_01220 SM00382 ATPases associated with a variety of cellular activities YYU_01225 SM00829 Enoylreductase YYU_01235 SM00248 ankyrin repeats YYU_01240 SM00244 prohibitin homologues YYU_01295 SM00316 Ribosomal protein S1-like RNA-binding domain YYU_01305 SM00967 RNA 2'-O ribose methyltransferase substrate binding YYU_01325 SM01403 YYU_01325 YYU_01345 SM01382 YYU_01345 YYU_01345 SM01383 YYU_01345 YYU_01360 SM00322 K homology RNA-binding domain YYU_01380 SM01374 YYU_01380 YYU_01385 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YYU_01445 SM00662 RNA polymerases D YYU_01455 SM00873 B3/4 domain YYU_01455 SM00874 tRNA synthetase B5 domain YYU_01455 SM00896 Ferredoxin-fold anticodon binding domain YYU_01485 SM00903 Flavin reductase like domain YYU_01495 SM00382 ATPases associated with a variety of cellular activities YYU_01550 SM00861 Transketolase, pyrimidine binding domain YYU_01580 SM00732 Likely ribonuclease with RNase H fold. YYU_01595 SM00788 Adenylosuccinate synthetase YYU_01615 SM00861 Transketolase, pyrimidine binding domain YYU_01665 SM00382 ATPases associated with a variety of cellular activities YYU_01665 SM00962 SRP54-type protein, GTPase domain YYU_01665 SM00963 SRP54-type protein, helical bundle domain YYU_01710 SM00487 DEAD-like helicases superfamily YYU_01710 SM00490 helicase superfamily c-terminal domain YYU_01745 SM00878 Biotin carboxylase C-terminal domain YYU_01760 SM00729 Elongator protein 3, MiaB family, Radical SAM YYU_01795 SM00382 ATPases associated with a variety of cellular activities YYU_01840 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YYU_01895 SM00564 beta-propeller repeat YYU_02005 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YYU_02005 SM01232 YYU_02005 YYU_02035 SM00382 ATPases associated with a variety of cellular activities YYU_02040 SM00937 YYU_02040 YYU_02105 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YYU_02170 SM00316 Ribosomal protein S1-like RNA-binding domain YYU_02170 SM00322 K homology RNA-binding domain YYU_02195 SM00382 ATPases associated with a variety of cellular activities YYU_02195 SM01086 C-terminal, D2-small domain, of ClpB protein YYU_02200 SM00838 Elongation factor G C-terminus YYU_02275 SM01323 YYU_02275 YYU_02290 SM00937 YYU_02290 YYU_02300 SM00845 GatB domain YYU_02320 SM00382 ATPases associated with a variety of cellular activities YYU_02320 SM00760 Bacterial dnaA protein helix-turn-helix domain YYU_02355 SM00937 YYU_02355 YYU_02420 SM00382 ATPases associated with a variety of cellular activities YYU_02430 SM00116 Domain in cystathionine beta-synthase and other proteins. YYU_02430 SM00924 MgtE intracellular N domain YYU_02495 SM01409 YYU_02495 YYU_02545 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YYU_02645 SM00841 Elongation factor P, C-terminal YYU_02645 SM01185 YYU_02645 YYU_02655 SM00363 S4 RNA-binding domain YYU_02660 SM00267 diguanylate cyclase YYU_02660 SM00448 cheY-homologous receiver domain YYU_02685 SM00840 YYU_02685 YYU_02740 SM00400 zinc finger YYU_02740 SM00493 YYU_02740 YYU_02745 SM00534 ATPase domain of DNA mismatch repair MUTS family YYU_02790 SM00387 Histidine kinase-like ATPases YYU_02790 SM00388 His Kinase A (phosphoacceptor) domain YYU_02790 SM00448 cheY-homologous receiver domain YYU_02845 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YYU_02845 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YYU_02845 SM00493 YYU_02845 YYU_02955 SM00650 Ribosomal RNA adenine dimethylases YYU_02985 SM00905 Dihydroneopterin aldolase YYU_03170 SM00822 YYU_03170 YYU_03300 SM01192 YYU_03300 YYU_03300 SM01193 YYU_03300 YYU_03325 SM00836 DALR anticodon binding domain YYU_03325 SM01016 Arginyl tRNA synthetase N terminal dom YYU_03355 SM00248 ankyrin repeats YYU_03365 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YYU_03380 SM00387 Histidine kinase-like ATPases YYU_03380 SM00433 TopoisomeraseII YYU_03440 SM00479 YYU_03440 YYU_03485 SM00248 ankyrin repeats YYU_03555 SM00382 ATPases associated with a variety of cellular activities YYU_03590 SM00838 Elongation factor G C-terminus YYU_03600 SM00316 Ribosomal protein S1-like RNA-binding domain YYU_03600 SM00322 K homology RNA-binding domain YYU_03605 SM01387 YYU_03605 YYU_03665 SM00382 ATPases associated with a variety of cellular activities YYU_03670 SM00411 bacterial (prokaryotic) histone like domain YYU_03935 SM01004 Delta-aminolevulinic acid dehydratase YYU_03955 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YYU_03955 SM00534 ATPase domain of DNA mismatch repair MUTS family YYU_03980 SM00861 Transketolase, pyrimidine binding domain YYU_03990 SM00998 Adenylosuccinate lyase C-terminus YYU_04040 SM00729 Elongator protein 3, MiaB family, Radical SAM YYU_04065 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YYU_04065 SM00465 GIY-YIG type nucleases (URI domain) YYU_04080 SM00387 Histidine kinase-like ATPases YYU_04100 SM00478 endonuclease III YYU_04100 SM00525 YYU_04100 YYU_04105 SM00434 DNA Topoisomerase IV YYU_04250 SM00248 ankyrin repeats YYU_04260 SM00825 Beta-ketoacyl synthase YYU_04305 SM00853 MutL C terminal dimerisation domain YYU_04305 SM01340 YYU_04305 YYU_04325 SM00387 Histidine kinase-like ATPases YYU_04325 SM00388 His Kinase A (phosphoacceptor) domain YYU_04370 SM00843 YYU_04370 YYU_04380 SM01091 Transporter associated domain YYU_04395 SM00450 Rhodanese Homology Domain YYU_04425 SM00382 ATPases associated with a variety of cellular activities YYU_04425 SM00464 Found in ATP-dependent protease La (LON) YYU_04430 SM00382 ATPases associated with a variety of cellular activities YYU_04430 SM00994 ClpX C4-type zinc finger YYU_04430 SM01086 C-terminal, D2-small domain, of ClpB protein YYU_04500 SM00382 ATPases associated with a variety of cellular activities YYU_04515 SM00382 ATPases associated with a variety of cellular activities YYU_04525 SM00493 YYU_04525 YYU_04530 SM00363 S4 RNA-binding domain YYU_04530 SM01390 YYU_04530 YYU_04595 SM00481 DNA polymerase alpha chain like domain YYU_04695 SM00663 RNA polymerase I subunit A N-terminus YYU_04720 SM00649 Ribosomal protein L11/L12 YYU_04725 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YYU_04745 SM00838 Elongation factor G C-terminus YYU_04745 SM00889 Elongation factor G, domain IV YYU_04760 SM00849 Metallo-beta-lactamase superfamily YYU_04830 SM00881 CoA binding domain YYU_04860 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YYU_04870 SM01230 YYU_04870 YYU_04875 SM00849 Metallo-beta-lactamase superfamily YYU_04915 SM00357 Cold shock protein domain YYU_04915 SM00382 ATPases associated with a variety of cellular activities YYU_04915 SM00959 Rho termination factor, N-terminal domain YYU_04925 SM00382 ATPases associated with a variety of cellular activities YYU_04925 SM01086 C-terminal, D2-small domain, of ClpB protein YYU_05000 SM01209 YYU_05000 YYU_05000 SM01210 YYU_05000 YYU_05005 SM01323 YYU_05005 YYU_05040 SM00480 DNA polymerase III beta subunit YYU_05045 SM00474 3'-5' exonuclease YYU_05050 SM00448 cheY-homologous receiver domain YYU_05050 SM00862 Transcriptional regulatory protein, C terminal YYU_05055 SM00530 Helix-turn-helix XRE-family like proteins YYU_05115 SM01400 YYU_05115 YYU_05285 SM00244 prohibitin homologues YYU_05290 SM00244 prohibitin homologues YYU_05295 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YYU_05300 SM00358 Double-stranded RNA binding motif YYU_05300 SM00535 Ribonuclease III family YYU_05360 SM00904 Riboflavin kinase YYU_05375 SM00842 Cell division protein FtsA YYU_05385 SM01329 YYU_05385 YYU_05440 SM00957 SecA DEAD-like domain YYU_05440 SM00958 SecA preprotein cross-linking domain YYU_05445 SM00382 ATPases associated with a variety of cellular activities YYU_05465 SM00842 Cell division protein FtsA YYU_05570 SM00798 AICARFT/IMPCHase bienzyme YYU_05570 SM00851 MGS-like domain YYU_05580 SM00935 Outer membrane protein (OmpH-like) YYU_05590 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YYU_05605 SM00936 Penicillin-binding protein 5, C-terminal domain YYU_05620 SM00562 YYU_05620 YYU_05625 SM00530 Helix-turn-helix XRE-family like proteins YYU_05665 SM00382 ATPases associated with a variety of cellular activities YYU_05665 SM00962 SRP54-type protein, GTPase domain YYU_05665 SM00963 SRP54-type protein, helical bundle domain YYU_05755 SM01230 YYU_05755 YYU_05815 SM01133 YYU_05815 YYU_05845 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YYU_05915 SM01001 AIR carboxylase YYU_05925 SM00411 bacterial (prokaryotic) histone like domain YYU_05930 SM00422 helix_turn_helix, mercury resistance YYU_05975 SM00864 Tubulin/FtsZ family, GTPase domain YYU_05975 SM00865 Tubulin/FtsZ family, C-terminal domain YYU_06000 SM00487 DEAD-like helicases superfamily YYU_06000 SM00490 helicase superfamily c-terminal domain YYU_06045 SM00861 Transketolase, pyrimidine binding domain YYU_06090 SM00028 Tetratricopeptide repeats YYU_06235 SM00859 Semialdehyde dehydrogenase, NAD binding domain YYU_06245 SM00382 ATPases associated with a variety of cellular activities YYU_06250 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YYU_06270 SM00382 ATPases associated with a variety of cellular activities YYU_06325 SM00487 DEAD-like helicases superfamily YYU_06325 SM00490 helicase superfamily c-terminal domain YYU_06345 SM00986 Uracil DNA glycosylase superfamily YYU_06345 SM00987 UreE urease accessory protein, C-terminal domain YYU_06355 SM00563 Phosphate acyltransferases