locus-tag class description WSQ_00005 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WSQ_00005 PF01367 5'-3' exonuclease, C-terminal SAM fold WSQ_00005 PF00476 DNA polymerase family A WSQ_00010 PF00834 Ribulose-phosphate 3 epimerase family WSQ_00015 PF02405 Permease MlaE WSQ_00020 PF00005 ABC transporter WSQ_00040 PF02773 S-adenosylmethionine synthetase, C-terminal domain WSQ_00040 PF02772 S-adenosylmethionine synthetase, central domain WSQ_00040 PF00438 S-adenosylmethionine synthetase, N-terminal domain WSQ_00050 PF01494 FAD binding domain WSQ_00065 PF02091 Glycyl-tRNA synthetase alpha subunit WSQ_00070 PF02092 Glycyl-tRNA synthetase beta subunit WSQ_00070 PF05746 DALR anticodon binding domain WSQ_00075 PF01556 DnaJ C terminal domain WSQ_00075 PF00226 DnaJ domain WSQ_00075 PF00684 DnaJ central domain WSQ_00080 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WSQ_00080 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WSQ_00085 PF02660 Glycerol-3-phosphate acyltransferase WSQ_00090 PF02075 Crossover junction endodeoxyribonuclease RuvC WSQ_00095 PF00510 Cytochrome c oxidase subunit III WSQ_00100 PF01208 Uroporphyrinogen decarboxylase (URO-D) WSQ_00105 PF03471 Transporter associated domain WSQ_00105 PF00571 CBS domain WSQ_00115 PF04860 Phage portal protein WSQ_00120 PF13847 Methyltransferase domain WSQ_00125 PF02445 Quinolinate synthetase A protein WSQ_00130 PF11953 Domain of unknown function (DUF3470) WSQ_00130 PF00037 4Fe-4S binding domain WSQ_00160 PF00579 tRNA synthetases class I (W and Y) WSQ_00165 PF01025 GrpE WSQ_00170 PF01872 RibD C-terminal domain WSQ_00170 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WSQ_00175 PF06418 CTP synthase N-terminus WSQ_00175 PF00117 Glutamine amidotransferase class-I WSQ_00185 PF00589 Phage integrase family WSQ_00185 PF02899 Phage integrase, N-terminal SAM-like domain WSQ_00190 PF00005 ABC transporter WSQ_00195 PF00390 Malic enzyme, N-terminal domain WSQ_00195 PF03949 Malic enzyme, NAD binding domain WSQ_00195 PF01515 Phosphate acetyl/butaryl transferase WSQ_00205 PF00361 Proton-conducting membrane transporter WSQ_00215 PF02470 MlaD protein WSQ_00225 PF03477 ATP cone domain WSQ_00245 PF13416 Bacterial extracellular solute-binding protein WSQ_00250 PF03966 Trm112p-like protein WSQ_00255 PF08946 Osmosensory transporter coiled coil WSQ_00255 PF00083 Sugar (and other) transporter WSQ_00260 PF00886 Ribosomal protein S16 WSQ_00275 PF00438 S-adenosylmethionine synthetase, N-terminal domain WSQ_00275 PF02772 S-adenosylmethionine synthetase, central domain WSQ_00275 PF02773 S-adenosylmethionine synthetase, C-terminal domain WSQ_00285 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WSQ_00285 PF01409 tRNA synthetases class II core domain (F) WSQ_00290 PF00453 Ribosomal protein L20 WSQ_00295 PF01632 Ribosomal protein L35 WSQ_00305 PF07497 Rho termination factor, RNA-binding domain WSQ_00305 PF07498 Rho termination factor, N-terminal domain WSQ_00305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WSQ_00310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSQ_00310 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_00315 PF00684 DnaJ central domain WSQ_00315 PF00226 DnaJ domain WSQ_00315 PF01556 DnaJ C terminal domain WSQ_00320 PF01106 NifU-like domain WSQ_00335 PF05690 Thiazole biosynthesis protein ThiG WSQ_00345 PF00749 tRNA synthetases class I (E and Q), catalytic domain WSQ_00390 PF02609 Exonuclease VII small subunit WSQ_00395 PF00085 Thioredoxin WSQ_00405 PF00676 Dehydrogenase E1 component WSQ_00410 PF12146 Serine aminopeptidase, S33 WSQ_00425 PF00551 Formyl transferase WSQ_00430 PF00478 IMP dehydrogenase / GMP reductase domain WSQ_00430 PF00571 CBS domain WSQ_00435 PF01513 ATP-NAD kinase WSQ_00445 PF04860 Phage portal protein WSQ_00450 PF00698 Acyl transferase domain WSQ_00455 PF02223 Thymidylate kinase WSQ_00475 PF02556 Preprotein translocase subunit SecB WSQ_00480 PF13462 Thioredoxin WSQ_00490 PF00675 Insulinase (Peptidase family M16) WSQ_00490 PF05193 Peptidase M16 inactive domain WSQ_00510 PF00696 Amino acid kinase family WSQ_00525 PF00677 Lumazine binding domain WSQ_00540 PF03461 TRCF domain WSQ_00540 PF00270 DEAD/DEAH box helicase WSQ_00540 PF17757 UvrB interaction domain WSQ_00540 PF00271 Helicase conserved C-terminal domain WSQ_00540 PF02559 CarD-like/TRCF domain WSQ_00550 PF00075 RNase H WSQ_00560 PF00696 Amino acid kinase family WSQ_00565 PF01765 Ribosome recycling factor WSQ_00595 PF01259 SAICAR synthetase WSQ_00600 PF13393 Histidyl-tRNA synthetase WSQ_00600 PF03129 Anticodon binding domain WSQ_00610 PF02628 Cytochrome oxidase assembly protein WSQ_00620 PF00005 ABC transporter WSQ_00630 PF00091 Tubulin/FtsZ family, GTPase domain WSQ_00630 PF12327 FtsZ family, C-terminal domain WSQ_00665 PF00313 'Cold-shock' DNA-binding domain WSQ_00670 PF00672 HAMP domain WSQ_00670 PF00989 PAS fold WSQ_00670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSQ_00670 PF00512 His Kinase A (phospho-acceptor) domain WSQ_00675 PF01612 3'-5' exonuclease WSQ_00675 PF00570 HRDC domain WSQ_00680 PF03120 NAD-dependent DNA ligase OB-fold domain WSQ_00680 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WSQ_00680 PF01653 NAD-dependent DNA ligase adenylation domain WSQ_00680 PF00533 BRCA1 C Terminus (BRCT) domain WSQ_00680 PF12826 Helix-hairpin-helix motif WSQ_00685 PF00462 Glutaredoxin WSQ_00695 PF08534 Redoxin WSQ_00725 PF00625 Guanylate kinase WSQ_00740 PF01250 Ribosomal protein S6 WSQ_00745 PF01084 Ribosomal protein S18 WSQ_00750 PF03948 Ribosomal protein L9, C-terminal domain WSQ_00750 PF01281 Ribosomal protein L9, N-terminal domain WSQ_00755 PF00464 Serine hydroxymethyltransferase WSQ_00765 PF00664 ABC transporter transmembrane region WSQ_00765 PF00005 ABC transporter WSQ_00770 PF00890 FAD binding domain WSQ_00770 PF02910 Fumarate reductase flavoprotein C-term WSQ_00775 PF13237 4Fe-4S dicluster domain WSQ_00775 PF13085 2Fe-2S iron-sulfur cluster binding domain WSQ_00780 PF02511 Thymidylate synthase complementing protein WSQ_00785 PF02910 Fumarate reductase flavoprotein C-term WSQ_00785 PF00890 FAD binding domain WSQ_00790 PF13085 2Fe-2S iron-sulfur cluster binding domain WSQ_00790 PF13237 4Fe-4S dicluster domain WSQ_00795 PF02511 Thymidylate synthase complementing protein WSQ_00800 PF07690 Major Facilitator Superfamily WSQ_00810 PF02091 Glycyl-tRNA synthetase alpha subunit WSQ_00820 PF17864 RuvB AAA lid domain WSQ_00820 PF05496 Holliday junction DNA helicase RuvB P-loop domain WSQ_00820 PF05491 RuvB C-terminal winged helix domain WSQ_00825 PF01330 RuvA N terminal domain WSQ_00825 PF07499 RuvA, C-terminal domain WSQ_00830 PF01578 Cytochrome C assembly protein WSQ_00835 PF00625 Guanylate kinase WSQ_00845 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WSQ_00845 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WSQ_00870 PF00034 Cytochrome c WSQ_00875 PF00361 Proton-conducting membrane transporter WSQ_00885 PF02896 PEP-utilising enzyme, TIM barrel domain WSQ_00885 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WSQ_00885 PF00391 PEP-utilising enzyme, mobile domain WSQ_00895 PF13419 Haloacid dehalogenase-like hydrolase WSQ_00910 PF01336 OB-fold nucleic acid binding domain WSQ_00910 PF02938 GAD domain WSQ_00910 PF00152 tRNA synthetases class II (D, K and N) WSQ_00915 PF04972 BON domain WSQ_00920 PF02951 Prokaryotic glutathione synthetase, N-terminal domain WSQ_00920 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain WSQ_00930 PF08478 POTRA domain, FtsQ-type WSQ_00930 PF03799 Cell division protein FtsQ WSQ_00935 PF02954 Bacterial regulatory protein, Fis family WSQ_00935 PF00158 Sigma-54 interaction domain WSQ_00935 PF00072 Response regulator receiver domain WSQ_00950 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WSQ_00950 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WSQ_00955 PF00589 Phage integrase family WSQ_00955 PF02899 Phage integrase, N-terminal SAM-like domain WSQ_00965 PF00586 AIR synthase related protein, N-terminal domain WSQ_00965 PF02769 AIR synthase related protein, C-terminal domain WSQ_00980 PF02769 AIR synthase related protein, C-terminal domain WSQ_00980 PF00586 AIR synthase related protein, N-terminal domain WSQ_01005 PF00586 AIR synthase related protein, N-terminal domain WSQ_01005 PF02769 AIR synthase related protein, C-terminal domain WSQ_01015 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WSQ_01020 PF00586 AIR synthase related protein, N-terminal domain WSQ_01020 PF02769 AIR synthase related protein, C-terminal domain WSQ_01020 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WSQ_01040 PF04055 Radical SAM superfamily WSQ_01040 PF06968 Biotin and Thiamin Synthesis associated domain WSQ_01055 PF01476 LysM domain WSQ_01055 PF01551 Peptidase family M23 WSQ_01060 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded WSQ_01065 PF01134 Glucose inhibited division protein A WSQ_01065 PF13932 GidA associated domain WSQ_01070 PF02769 AIR synthase related protein, C-terminal domain WSQ_01070 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal WSQ_01070 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WSQ_01105 PF00551 Formyl transferase WSQ_01110 PF02789 Cytosol aminopeptidase family, N-terminal domain WSQ_01110 PF00883 Cytosol aminopeptidase family, catalytic domain WSQ_01115 PF00775 Dioxygenase WSQ_01130 PF10431 C-terminal, D2-small domain, of ClpB protein WSQ_01130 PF17871 AAA lid domain WSQ_01130 PF07724 AAA domain (Cdc48 subfamily) WSQ_01130 PF00004 ATPase family associated with various cellular activities (AAA) WSQ_01130 PF02861 Clp amino terminal domain, pathogenicity island component WSQ_01150 PF00118 TCP-1/cpn60 chaperonin family WSQ_01155 PF00166 Chaperonin 10 Kd subunit WSQ_01160 PF04002 RadC-like JAB domain WSQ_01165 PF03099 Biotin/lipoate A/B protein ligase family WSQ_01170 PF01979 Amidohydrolase family WSQ_01175 PF02441 Flavoprotein WSQ_01175 PF04127 DNA / pantothenate metabolism flavoprotein WSQ_01180 PF10415 Fumarase C C-terminus WSQ_01180 PF00206 Lyase WSQ_01190 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WSQ_01190 PF02142 MGS-like domain WSQ_01190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WSQ_01200 PF00809 Pterin binding enzyme WSQ_01210 PF00005 ABC transporter WSQ_01210 PF00664 ABC transporter transmembrane region WSQ_01215 PF08240 Alcohol dehydrogenase GroES-like domain WSQ_01215 PF00107 Zinc-binding dehydrogenase WSQ_01220 PF12705 PD-(D/E)XK nuclease superfamily WSQ_01220 PF00580 UvrD/REP helicase N-terminal domain WSQ_01220 PF13361 UvrD-like helicase C-terminal domain WSQ_01245 PF00762 Ferrochelatase WSQ_01270 PF02779 Transketolase, pyrimidine binding domain WSQ_01270 PF02780 Transketolase, C-terminal domain WSQ_01270 PF00456 Transketolase, thiamine diphosphate binding domain WSQ_01280 PF00216 Bacterial DNA-binding protein WSQ_01285 PF01343 Peptidase family S49 WSQ_01290 PF00575 S1 RNA binding domain WSQ_01295 PF02224 Cytidylate kinase WSQ_01300 PF00588 SpoU rRNA Methylase family WSQ_01300 PF08032 RNA 2'-O ribose methyltransferase substrate binding WSQ_01315 PF03143 Elongation factor Tu C-terminal domain WSQ_01315 PF03144 Elongation factor Tu domain 2 WSQ_01315 PF00009 Elongation factor Tu GTP binding domain WSQ_01320 PF00338 Ribosomal protein S10p/S20e WSQ_01325 PF00297 Ribosomal protein L3 WSQ_01330 PF00573 Ribosomal protein L4/L1 family WSQ_01335 PF00276 Ribosomal protein L23 WSQ_01340 PF03947 Ribosomal Proteins L2, C-terminal domain WSQ_01340 PF00181 Ribosomal Proteins L2, RNA binding domain WSQ_01345 PF00203 Ribosomal protein S19 WSQ_01350 PF00237 Ribosomal protein L22p/L17e WSQ_01355 PF00189 Ribosomal protein S3, C-terminal domain WSQ_01355 PF07650 KH domain WSQ_01360 PF00252 Ribosomal protein L16p/L10e WSQ_01365 PF00831 Ribosomal L29 protein WSQ_01370 PF00366 Ribosomal protein S17 WSQ_01375 PF00238 Ribosomal protein L14p/L23e WSQ_01380 PF00467 KOW motif WSQ_01380 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WSQ_01385 PF00281 Ribosomal protein L5 WSQ_01385 PF00673 ribosomal L5P family C-terminus WSQ_01390 PF00253 Ribosomal protein S14p/S29e WSQ_01395 PF00410 Ribosomal protein S8 WSQ_01400 PF00347 Ribosomal protein L6 WSQ_01405 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WSQ_01410 PF03719 Ribosomal protein S5, C-terminal domain WSQ_01410 PF00333 Ribosomal protein S5, N-terminal domain WSQ_01415 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WSQ_01420 PF00344 SecY translocase WSQ_01425 PF05191 Adenylate kinase, active site lid WSQ_01430 PF00416 Ribosomal protein S13/S18 WSQ_01435 PF00411 Ribosomal protein S11 WSQ_01440 PF01000 RNA polymerase Rpb3/RpoA insert domain WSQ_01440 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WSQ_01440 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WSQ_01445 PF01196 Ribosomal protein L17 WSQ_01450 PF03147 Ferredoxin-fold anticodon binding domain WSQ_01450 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WSQ_01450 PF01588 Putative tRNA binding domain WSQ_01450 PF03483 B3/4 domain WSQ_01450 PF03484 tRNA synthetase B5 domain WSQ_01460 PF03772 Competence protein WSQ_01460 PF13567 Domain of unknown function (DUF4131) WSQ_01460 PF00753 Metallo-beta-lactamase superfamily WSQ_01475 PF00825 Ribonuclease P WSQ_01480 PF00468 Ribosomal protein L34 WSQ_01485 PF01040 UbiA prenyltransferase family WSQ_01490 PF01613 Flavin reductase like domain WSQ_01500 PF00005 ABC transporter WSQ_01505 PF01702 Queuine tRNA-ribosyltransferase WSQ_01510 PF01783 Ribosomal L32p protein family WSQ_01515 PF02504 Fatty acid synthesis protein WSQ_01520 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WSQ_01520 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WSQ_01535 PF14437 MafB19-like deaminase WSQ_01545 PF03796 DnaB-like helicase C terminal domain WSQ_01545 PF00772 DnaB-like helicase N terminal domain WSQ_01550 PF01266 FAD dependent oxidoreductase WSQ_01555 PF02780 Transketolase, C-terminal domain WSQ_01555 PF00456 Transketolase, thiamine diphosphate binding domain WSQ_01555 PF02779 Transketolase, pyrimidine binding domain WSQ_01570 PF00348 Polyprenyl synthetase WSQ_01580 PF02867 Ribonucleotide reductase, barrel domain WSQ_01580 PF00317 Ribonucleotide reductase, all-alpha domain WSQ_01580 PF03477 ATP cone domain WSQ_01585 PF03652 Holliday junction resolvase WSQ_01600 PF00709 Adenylosuccinate synthetase WSQ_01605 PF18074 Primosomal protein N C-terminal domain WSQ_01605 PF17764 3′ DNA-binding domain (3′BD) WSQ_01605 PF00271 Helicase conserved C-terminal domain WSQ_01605 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WSQ_01605 PF00270 DEAD/DEAH box helicase WSQ_01610 PF00691 OmpA family WSQ_01620 PF00456 Transketolase, thiamine diphosphate binding domain WSQ_01620 PF02780 Transketolase, C-terminal domain WSQ_01620 PF02779 Transketolase, pyrimidine binding domain WSQ_01630 PF03334 Na+/H+ antiporter subunit WSQ_01640 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter WSQ_01650 PF00575 S1 RNA binding domain WSQ_01650 PF10150 Ribonuclease E/G family WSQ_01650 PF12111 Polyribonucleotide phosphorylase C terminal WSQ_01655 PF00012 Hsp70 protein WSQ_01665 PF00361 Proton-conducting membrane transporter WSQ_01670 PF00448 SRP54-type protein, GTPase domain WSQ_01670 PF02881 SRP54-type protein, helical bundle domain WSQ_01670 PF02978 Signal peptide binding domain WSQ_01675 PF01926 50S ribosome-binding GTPase WSQ_01675 PF07650 KH domain WSQ_01715 PF00271 Helicase conserved C-terminal domain WSQ_01715 PF00270 DEAD/DEAH box helicase WSQ_01715 PF18074 Primosomal protein N C-terminal domain WSQ_01715 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WSQ_01715 PF17764 3′ DNA-binding domain (3′BD) WSQ_01725 PF00830 Ribosomal L28 family WSQ_01740 PF00849 RNA pseudouridylate synthase WSQ_01750 PF00289 Biotin carboxylase, N-terminal domain WSQ_01750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WSQ_01750 PF02785 Biotin carboxylase C-terminal domain WSQ_01770 PF04055 Radical SAM superfamily WSQ_01790 PF00528 Binding-protein-dependent transport system inner membrane component WSQ_01795 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WSQ_01795 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WSQ_01805 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WSQ_01815 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WSQ_01820 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WSQ_01825 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WSQ_01835 PF00692 dUTPase WSQ_01840 PF02401 LytB protein WSQ_01850 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WSQ_01850 PF00117 Glutamine amidotransferase class-I WSQ_01890 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WSQ_01890 PF01676 Metalloenzyme superfamily WSQ_01895 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WSQ_01895 PF01926 50S ribosome-binding GTPase WSQ_01910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSQ_01910 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_01920 PF01176 Translation initiation factor 1A / IF-1 WSQ_01925 PF02545 Maf-like protein WSQ_01930 PF00318 Ribosomal protein S2 WSQ_01935 PF00889 Elongation factor TS WSQ_01950 PF00950 ABC 3 transport family WSQ_01960 PF00355 Rieske [2Fe-2S] domain WSQ_01960 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal WSQ_01965 PF00033 Cytochrome b/b6/petB WSQ_01965 PF00032 Cytochrome b(C-terminal)/b6/petD WSQ_01970 PF02167 Cytochrome C1 family WSQ_02005 PF00749 tRNA synthetases class I (E and Q), catalytic domain WSQ_02015 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WSQ_02015 PF06827 Zinc finger found in FPG and IleRS WSQ_02015 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WSQ_02020 PF01134 Glucose inhibited division protein A WSQ_02020 PF13932 GidA associated domain WSQ_02035 PF01039 Carboxyl transferase domain WSQ_02045 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WSQ_02050 PF00472 RF-1 domain WSQ_02050 PF03462 PCRF domain WSQ_02055 PF01926 50S ribosome-binding GTPase WSQ_02060 PF00696 Amino acid kinase family WSQ_02065 PF01218 Coproporphyrinogen III oxidase WSQ_02080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WSQ_02080 PF02403 Seryl-tRNA synthetase N-terminal domain WSQ_02085 PF02646 RmuC family WSQ_02110 PF10531 SLBB domain WSQ_02110 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WSQ_02110 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit WSQ_02125 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WSQ_02130 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WSQ_02135 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WSQ_02135 PF00361 Proton-conducting membrane transporter WSQ_02140 PF00361 Proton-conducting membrane transporter WSQ_02140 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus WSQ_02145 PF00361 Proton-conducting membrane transporter WSQ_02150 PF13288 DXP reductoisomerase C-terminal domain WSQ_02150 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain WSQ_02150 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WSQ_02160 PF04551 GcpE protein WSQ_02165 PF00902 Sec-independent protein translocase protein (TatC) WSQ_02170 PF00873 AcrB/AcrD/AcrF family WSQ_02175 PF00575 S1 RNA binding domain WSQ_02175 PF08529 NusA N-terminal domain WSQ_02175 PF13184 NusA-like KH domain WSQ_02180 PF11987 Translation-initiation factor 2 WSQ_02180 PF00009 Elongation factor Tu GTP binding domain WSQ_02180 PF04760 Translation initiation factor IF-2, N-terminal region WSQ_02185 PF02033 Ribosome-binding factor A WSQ_02190 PF00009 Elongation factor Tu GTP binding domain WSQ_02190 PF03764 Elongation factor G, domain IV WSQ_02190 PF14492 Elongation Factor G, domain II WSQ_02190 PF00679 Elongation factor G C-terminus WSQ_02190 PF03144 Elongation factor Tu domain 2 WSQ_02195 PF03471 Transporter associated domain WSQ_02195 PF03741 Integral membrane protein TerC family WSQ_02200 PF10431 C-terminal, D2-small domain, of ClpB protein WSQ_02200 PF02861 Clp amino terminal domain, pathogenicity island component WSQ_02200 PF07724 AAA domain (Cdc48 subfamily) WSQ_02200 PF00004 ATPase family associated with various cellular activities (AAA) WSQ_02200 PF17871 AAA lid domain WSQ_02270 PF03462 PCRF domain WSQ_02270 PF00472 RF-1 domain WSQ_02280 PF00436 Single-strand binding protein family WSQ_02285 PF03462 PCRF domain WSQ_02285 PF00472 RF-1 domain WSQ_02295 PF02934 GatB/GatE catalytic domain WSQ_02295 PF02637 GatB domain WSQ_02315 PF00308 Bacterial dnaA protein WSQ_02315 PF08299 Bacterial dnaA protein helix-turn-helix WSQ_02315 PF11638 DnaA N-terminal domain WSQ_02345 PF00472 RF-1 domain WSQ_02345 PF03462 PCRF domain WSQ_02350 PF01709 Transcriptional regulator WSQ_02360 PF04055 Radical SAM superfamily WSQ_02360 PF00202 Aminotransferase class-III WSQ_02360 PF06968 Biotin and Thiamin Synthesis associated domain WSQ_02395 PF03764 Elongation factor G, domain IV WSQ_02395 PF14492 Elongation Factor G, domain II WSQ_02395 PF00009 Elongation factor Tu GTP binding domain WSQ_02395 PF03144 Elongation factor Tu domain 2 WSQ_02395 PF00679 Elongation factor G C-terminus WSQ_02400 PF14492 Elongation Factor G, domain II WSQ_02400 PF03144 Elongation factor Tu domain 2 WSQ_02400 PF00009 Elongation factor Tu GTP binding domain WSQ_02400 PF03764 Elongation factor G, domain IV WSQ_02400 PF00679 Elongation factor G C-terminus WSQ_02405 PF00923 Transaldolase/Fructose-6-phosphate aldolase WSQ_02415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WSQ_02415 PF02874 ATP synthase alpha/beta family, beta-barrel domain WSQ_02435 PF01728 FtsJ-like methyltransferase WSQ_02445 PF01416 tRNA pseudouridine synthase WSQ_02450 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WSQ_02450 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WSQ_02455 PF01728 FtsJ-like methyltransferase WSQ_02470 PF00444 Ribosomal protein L36 WSQ_02480 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WSQ_02490 PF01192 RNA polymerase Rpb6 WSQ_02505 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WSQ_02510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WSQ_02515 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WSQ_02525 PF01975 Survival protein SurE WSQ_02535 PF03100 CcmE WSQ_02540 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WSQ_02545 PF01026 TatD related DNase WSQ_02565 PF09334 tRNA synthetases class I (M) WSQ_02565 PF00133 tRNA synthetases class I (I, L, M and V) WSQ_02565 PF13603 Leucyl-tRNA synthetase, Domain 2 WSQ_02565 PF08264 Anticodon-binding domain of tRNA WSQ_02590 PF17755 UvrA DNA-binding domain WSQ_02590 PF17760 UvrA interaction domain WSQ_02595 PF01029 NusB family WSQ_02600 PF00885 6,7-dimethyl-8-ribityllumazine synthase WSQ_02605 PF14849 YidC periplasmic domain WSQ_02605 PF02096 60Kd inner membrane protein WSQ_02610 PF14849 YidC periplasmic domain WSQ_02610 PF02096 60Kd inner membrane protein WSQ_02615 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WSQ_02615 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal WSQ_02615 PF00384 Molybdopterin oxidoreductase WSQ_02620 PF01066 CDP-alcohol phosphatidyltransferase WSQ_02625 PF02666 Phosphatidylserine decarboxylase WSQ_02630 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_02640 PF09285 Elongation factor P, C-terminal WSQ_02640 PF01132 Elongation factor P (EF-P) OB domain WSQ_02640 PF08207 Elongation factor P (EF-P) KOW-like domain WSQ_02645 PF00459 Inositol monophosphatase family WSQ_02650 PF01479 S4 domain WSQ_02650 PF00849 RNA pseudouridylate synthase WSQ_02655 PF00072 Response regulator receiver domain WSQ_02655 PF00990 Diguanylate cyclase, GGDEF domain WSQ_02665 PF05088 Bacterial NAD-glutamate dehydrogenase WSQ_02675 PF06055 Exopolysaccharide synthesis, ExoD WSQ_02680 PF09190 DALR domain WSQ_02680 PF01406 tRNA synthetases class I (C) catalytic domain WSQ_02695 PF00268 Ribonucleotide reductase, small chain WSQ_02705 PF05746 DALR anticodon binding domain WSQ_02705 PF00750 tRNA synthetases class I (R) WSQ_02705 PF03485 Arginyl tRNA synthetase N terminal domain WSQ_02735 PF08275 DNA primase catalytic core, N-terminal domain WSQ_02735 PF13662 Toprim domain WSQ_02735 PF01807 CHC2 zinc finger WSQ_02740 PF05190 MutS family domain IV WSQ_02740 PF00488 MutS domain V WSQ_02740 PF05192 MutS domain III WSQ_02740 PF05188 MutS domain II WSQ_02740 PF01624 MutS domain I WSQ_02750 PF08544 GHMP kinases C terminal WSQ_02750 PF00288 GHMP kinases N terminal domain WSQ_02755 PF01207 Dihydrouridine synthase (Dus) WSQ_02760 PF04545 Sigma-70, region 4 WSQ_02760 PF04539 Sigma-70 region 3 WSQ_02760 PF04542 Sigma-70 region 2 WSQ_02760 PF00140 Sigma-70 factor, region 1.2 WSQ_02760 PF04546 Sigma-70, non-essential region WSQ_02760 PF03979 Sigma-70 factor, region 1.1 WSQ_02775 PF03091 CutA1 divalent ion tolerance protein WSQ_02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSQ_02780 PF13188 PAS domain WSQ_02780 PF00512 His Kinase A (phospho-acceptor) domain WSQ_02780 PF00072 Response regulator receiver domain WSQ_02780 PF08448 PAS fold WSQ_02800 PF13667 ThiC-associated domain WSQ_02800 PF01964 Radical SAM ThiC family WSQ_02805 PF01256 Carbohydrate kinase WSQ_02805 PF03853 YjeF-related protein N-terminus WSQ_02835 PF01131 DNA topoisomerase WSQ_02835 PF01396 Topoisomerase DNA binding C4 zinc finger WSQ_02835 PF13368 Topoisomerase C-terminal repeat WSQ_02835 PF01751 Toprim domain WSQ_02845 PF01964 Radical SAM ThiC family WSQ_02845 PF13667 ThiC-associated domain WSQ_02880 PF01921 tRNA synthetases class I (K) WSQ_02900 PF00814 Glycoprotease family WSQ_02950 PF00398 Ribosomal RNA adenine dimethylase WSQ_02960 PF00121 Triosephosphate isomerase WSQ_02965 PF16868 NMT1-like family WSQ_02970 PF00814 Glycoprotease family WSQ_02985 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WSQ_02985 PF00056 lactate/malate dehydrogenase, NAD binding domain WSQ_03055 PF02502 Ribose/Galactose Isomerase WSQ_03070 PF01648 4'-phosphopantetheinyl transferase superfamily WSQ_03075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WSQ_03075 PF03129 Anticodon binding domain WSQ_03090 PF01467 Cytidylyltransferase-like WSQ_03095 PF01467 Cytidylyltransferase-like WSQ_03120 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_03125 PF00578 AhpC/TSA family WSQ_03125 PF10417 C-terminal domain of 1-Cys peroxiredoxin WSQ_03165 PF01619 Proline dehydrogenase WSQ_03165 PF18327 Proline utilization A proline dehydrogenase N-terminal domain WSQ_03165 PF00171 Aldehyde dehydrogenase family WSQ_03165 PF14850 DNA-binding domain of Proline dehydrogenase WSQ_03175 PF02129 X-Pro dipeptidyl-peptidase (S15 family) WSQ_03190 PF00266 Aminotransferase class-V WSQ_03195 PF01592 NifU-like N terminal domain WSQ_03200 PF01521 Iron-sulphur cluster biosynthesis WSQ_03205 PF07743 HSCB C-terminal oligomerisation domain WSQ_03205 PF00226 DnaJ domain WSQ_03210 PF00012 Hsp70 protein WSQ_03215 PF00111 2Fe-2S iron-sulfur cluster binding domain WSQ_03265 PF01227 GTP cyclohydrolase I WSQ_03270 PF01795 MraW methylase family WSQ_03290 PF01018 GTP1/OBG WSQ_03290 PF01926 50S ribosome-binding GTPase WSQ_03295 PF00113 Enolase, C-terminal TIM barrel domain WSQ_03295 PF03952 Enolase, N-terminal domain WSQ_03305 PF00829 Ribosomal prokaryotic L21 protein WSQ_03310 PF01016 Ribosomal L27 protein WSQ_03320 PF00750 tRNA synthetases class I (R) WSQ_03320 PF05746 DALR anticodon binding domain WSQ_03320 PF03485 Arginyl tRNA synthetase N terminal domain WSQ_03330 PF01523 Putative modulator of DNA gyrase WSQ_03335 PF01227 GTP cyclohydrolase I WSQ_03340 PF00231 ATP synthase WSQ_03355 PF00146 NADH dehydrogenase WSQ_03360 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal WSQ_03360 PF00384 Molybdopterin oxidoreductase WSQ_03360 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WSQ_03375 PF00204 DNA gyrase B WSQ_03375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSQ_03375 PF00986 DNA gyrase B subunit, carboxyl terminus WSQ_03375 PF01751 Toprim domain WSQ_03440 PF00929 Exonuclease WSQ_03450 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WSQ_03455 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_03460 PF00586 AIR synthase related protein, N-terminal domain WSQ_03460 PF02769 AIR synthase related protein, C-terminal domain WSQ_03465 PF02565 Recombination protein O C terminal WSQ_03465 PF11967 Recombination protein O N terminal WSQ_03505 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WSQ_03505 PF01565 FAD binding domain WSQ_03510 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WSQ_03510 PF03900 Porphobilinogen deaminase, C-terminal domain WSQ_03515 PF02875 Mur ligase family, glutamate ligase domain WSQ_03515 PF08245 Mur ligase middle domain WSQ_03520 PF01425 Amidase WSQ_03525 PF02441 Flavoprotein WSQ_03555 PF01078 Magnesium chelatase, subunit ChlI WSQ_03555 PF13335 Magnesium chelatase, subunit ChlI C-terminal WSQ_03570 PF00140 Sigma-70 factor, region 1.2 WSQ_03570 PF04542 Sigma-70 region 2 WSQ_03570 PF04545 Sigma-70, region 4 WSQ_03590 PF00679 Elongation factor G C-terminus WSQ_03590 PF03144 Elongation factor Tu domain 2 WSQ_03590 PF00009 Elongation factor Tu GTP binding domain WSQ_03590 PF06421 GTP-binding protein LepA C-terminus WSQ_03600 PF00013 KH domain WSQ_03600 PF01138 3' exoribonuclease family, domain 1 WSQ_03600 PF03725 3' exoribonuclease family, domain 2 WSQ_03600 PF00575 S1 RNA binding domain WSQ_03600 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WSQ_03605 PF00312 Ribosomal protein S15 WSQ_03610 PF01509 TruB family pseudouridylate synthase (N terminal domain) WSQ_03610 PF16198 tRNA pseudouridylate synthase B C-terminal domain WSQ_03655 PF01121 Dephospho-CoA kinase WSQ_03660 PF03481 Putative GTP-binding controlling metal-binding WSQ_03660 PF01300 Telomere recombination WSQ_03665 PF09115 DNA polymerase III, delta subunit, C terminal WSQ_03680 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WSQ_03685 PF01467 Cytidylyltransferase-like WSQ_03700 PF04452 RNA methyltransferase WSQ_03705 PF00578 AhpC/TSA family WSQ_03710 PF08264 Anticodon-binding domain of tRNA WSQ_03710 PF00133 tRNA synthetases class I (I, L, M and V) WSQ_03730 PF12838 4Fe-4S dicluster domain WSQ_03735 PF10502 Signal peptidase, peptidase S26 WSQ_03740 PF01521 Iron-sulphur cluster biosynthesis WSQ_03780 PF00231 ATP synthase WSQ_03785 PF01227 GTP cyclohydrolase I WSQ_03930 PF08946 Osmosensory transporter coiled coil WSQ_03930 PF00083 Sugar (and other) transporter WSQ_03940 PF00490 Delta-aminolevulinic acid dehydratase WSQ_03945 PF00795 Carbon-nitrogen hydrolase WSQ_03945 PF02540 NAD synthase WSQ_03960 PF01624 MutS domain I WSQ_03960 PF05188 MutS domain II WSQ_03960 PF05192 MutS domain III WSQ_03960 PF05190 MutS family domain IV WSQ_03960 PF00488 MutS domain V WSQ_03970 PF01230 HIT domain WSQ_03985 PF00676 Dehydrogenase E1 component WSQ_03985 PF16870 2-oxoglutarate dehydrogenase C-terminal WSQ_03985 PF16078 2-oxoglutarate dehydrogenase N-terminus WSQ_03985 PF02779 Transketolase, pyrimidine binding domain WSQ_04000 PF10397 Adenylosuccinate lyase C-terminus WSQ_04000 PF00206 Lyase WSQ_04035 PF08279 HTH domain WSQ_04035 PF02237 Biotin protein ligase C terminal domain WSQ_04035 PF03099 Biotin/lipoate A/B protein ligase family WSQ_04060 PF00919 Uncharacterized protein family UPF0004 WSQ_04060 PF04055 Radical SAM superfamily WSQ_04080 PF01541 GIY-YIG catalytic domain WSQ_04080 PF08459 UvrC Helix-hairpin-helix N-terminal WSQ_04095 PF00154 recA bacterial DNA recombination protein WSQ_04100 PF00183 Hsp90 protein WSQ_04100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSQ_04125 PF00730 HhH-GPD superfamily base excision DNA repair protein WSQ_04125 PF00633 Helix-hairpin-helix motif WSQ_04130 PF03989 DNA gyrase C-terminal domain, beta-propeller WSQ_04130 PF00521 DNA gyrase/topoisomerase IV, subunit A WSQ_04145 PF13361 UvrD-like helicase C-terminal domain WSQ_04145 PF00580 UvrD/REP helicase N-terminal domain WSQ_04250 PF02600 Disulfide bond formation protein DsbB WSQ_04260 PF00471 Ribosomal protein L33 WSQ_04280 PF00550 Phosphopantetheine attachment site WSQ_04285 PF00109 Beta-ketoacyl synthase, N-terminal domain WSQ_04285 PF02801 Beta-ketoacyl synthase, C-terminal domain WSQ_04300 PF17782 DprA winged helix domain WSQ_04300 PF02481 DNA recombination-mediator protein A WSQ_04325 PF01617 Surface antigen WSQ_04330 PF01119 DNA mismatch repair protein, C-terminal domain WSQ_04330 PF08676 MutL C terminal dimerisation domain WSQ_04335 PF01618 MotA/TolQ/ExbB proton channel family WSQ_04355 PF00512 His Kinase A (phospho-acceptor) domain WSQ_04355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSQ_04355 PF00989 PAS fold WSQ_04360 PF00202 Aminotransferase class-III WSQ_04405 PF01580 FtsK/SpoIIIE family WSQ_04405 PF09397 Ftsk gamma domain WSQ_04405 PF17854 FtsK alpha domain WSQ_04405 PF13491 4TM region of DNA translocase FtsK/SpoIIIE WSQ_04405 PF17854 FtsK alpha domain WSQ_04405 PF09397 Ftsk gamma domain WSQ_04405 PF01580 FtsK/SpoIIIE family WSQ_04405 PF13491 4TM region of DNA translocase FtsK/SpoIIIE WSQ_04415 PF03471 Transporter associated domain WSQ_04415 PF00571 CBS domain WSQ_04415 PF01595 Cyclin M transmembrane N-terminal domain WSQ_04420 PF02581 Thiamine monophosphate synthase WSQ_04425 PF03618 Kinase/pyrophosphorylase WSQ_04445 PF02911 Formyl transferase, C-terminal domain WSQ_04445 PF00551 Formyl transferase WSQ_04460 PF00004 ATPase family associated with various cellular activities (AAA) WSQ_04460 PF05362 Lon protease (S16) C-terminal proteolytic domain WSQ_04460 PF02190 ATP-dependent protease La (LON) substrate-binding domain WSQ_04465 PF07724 AAA domain (Cdc48 subfamily) WSQ_04465 PF10431 C-terminal, D2-small domain, of ClpB protein WSQ_04465 PF06689 ClpX C4-type zinc finger WSQ_04470 PF00574 Clp protease WSQ_04510 PF00155 Aminotransferase class I and II WSQ_04530 PF01297 Zinc-uptake complex component A periplasmic WSQ_04535 PF00005 ABC transporter WSQ_04540 PF03109 ABC1 family WSQ_04550 PF08402 TOBE domain WSQ_04550 PF00005 ABC transporter WSQ_04555 PF02416 mttA/Hcf106 family WSQ_04560 PF02132 RecR protein WSQ_04560 PF13662 Toprim domain WSQ_04565 PF01479 S4 domain WSQ_04565 PF00163 Ribosomal protein S4/S9 N-terminal domain WSQ_04580 PF08543 Phosphomethylpyrimidine kinase WSQ_04580 PF02581 Thiamine monophosphate synthase WSQ_04590 PF01594 AI-2E family transporter WSQ_04605 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WSQ_04610 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WSQ_04620 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WSQ_04625 PF07733 Bacterial DNA polymerase III alpha NTPase domain WSQ_04625 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WSQ_04625 PF02811 PHP domain WSQ_04625 PF14579 Helix-hairpin-helix motif WSQ_04655 PF01243 Pyridoxamine 5'-phosphate oxidase WSQ_04655 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region WSQ_04665 PF02230 Phospholipase/Carboxylesterase WSQ_04670 PF01327 Polypeptide deformylase WSQ_04675 PF01180 Dihydroorotate dehydrogenase WSQ_04680 PF03309 Type III pantothenate kinase WSQ_04690 PF00155 Aminotransferase class I and II WSQ_04720 PF01351 Ribonuclease HII WSQ_04725 PF04997 RNA polymerase Rpb1, domain 1 WSQ_04725 PF04998 RNA polymerase Rpb1, domain 5 WSQ_04725 PF05000 RNA polymerase Rpb1, domain 4 WSQ_04725 PF00623 RNA polymerase Rpb1, domain 2 WSQ_04725 PF04983 RNA polymerase Rpb1, domain 3 WSQ_04730 PF04560 RNA polymerase Rpb2, domain 7 WSQ_04730 PF04563 RNA polymerase beta subunit WSQ_04730 PF04565 RNA polymerase Rpb2, domain 3 WSQ_04730 PF04561 RNA polymerase Rpb2, domain 2 WSQ_04730 PF00562 RNA polymerase Rpb2, domain 6 WSQ_04730 PF10385 RNA polymerase beta subunit external 1 domain WSQ_04735 PF00542 Ribosomal protein L7/L12 C-terminal domain WSQ_04740 PF00466 Ribosomal protein L10 WSQ_04745 PF00687 Ribosomal protein L1p/L10e family WSQ_04750 PF00298 Ribosomal protein L11, RNA binding domain WSQ_04750 PF03946 Ribosomal protein L11, N-terminal domain WSQ_04755 PF02357 Transcription termination factor nusG WSQ_04755 PF00467 KOW motif WSQ_04770 PF03144 Elongation factor Tu domain 2 WSQ_04770 PF00009 Elongation factor Tu GTP binding domain WSQ_04770 PF03143 Elongation factor Tu C-terminal domain WSQ_04775 PF03144 Elongation factor Tu domain 2 WSQ_04775 PF03764 Elongation factor G, domain IV WSQ_04775 PF14492 Elongation Factor G, domain II WSQ_04775 PF00679 Elongation factor G C-terminus WSQ_04775 PF00009 Elongation factor Tu GTP binding domain WSQ_04780 PF00177 Ribosomal protein S7p/S5e WSQ_04785 PF00164 Ribosomal protein S12/S23 WSQ_04790 PF17770 Ribonuclease J C-terminal domain WSQ_04790 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WSQ_04790 PF12706 Beta-lactamase superfamily domain WSQ_04795 PF04052 TolB amino-terminal domain WSQ_04795 PF07676 WD40-like Beta Propeller Repeat WSQ_04830 PF00529 HlyD membrane-fusion protein of T1SS WSQ_04835 PF00528 Binding-protein-dependent transport system inner membrane component WSQ_04840 PF03060 Nitronate monooxygenase WSQ_04845 PF02630 SCO1/SenC WSQ_04855 PF01165 Ribosomal protein S21 WSQ_04860 PF00549 CoA-ligase WSQ_04860 PF08442 ATP-grasp domain WSQ_04865 PF02629 CoA binding domain WSQ_04865 PF00549 CoA-ligase WSQ_04880 PF01171 PP-loop family WSQ_04885 PF00814 Glycoprotease family WSQ_04890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WSQ_04890 PF01411 tRNA synthetases class II (A) WSQ_04895 PF00528 Binding-protein-dependent transport system inner membrane component WSQ_04940 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_04940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSQ_04945 PF07497 Rho termination factor, RNA-binding domain WSQ_04945 PF07498 Rho termination factor, N-terminal domain WSQ_04945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WSQ_04950 PF00227 Proteasome subunit WSQ_04955 PF10431 C-terminal, D2-small domain, of ClpB protein WSQ_04955 PF07724 AAA domain (Cdc48 subfamily) WSQ_04955 PF00004 ATPase family associated with various cellular activities (AAA) WSQ_04960 PF01209 ubiE/COQ5 methyltransferase family WSQ_04990 PF09334 tRNA synthetases class I (M) WSQ_04990 PF08264 Anticodon-binding domain of tRNA WSQ_05020 PF00116 Cytochrome C oxidase subunit II, periplasmic domain WSQ_05020 PF02790 Cytochrome C oxidase subunit II, transmembrane domain WSQ_05025 PF00115 Cytochrome C and Quinol oxidase polypeptide I WSQ_05030 PF01040 UbiA prenyltransferase family WSQ_05035 PF13525 Outer membrane lipoprotein WSQ_05040 PF02844 Phosphoribosylglycinamide synthetase, N domain WSQ_05040 PF02843 Phosphoribosylglycinamide synthetase, C domain WSQ_05040 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WSQ_05045 PF02699 Preprotein translocase subunit WSQ_05060 PF01171 PP-loop family WSQ_05065 PF00814 Glycoprotease family WSQ_05070 PF01411 tRNA synthetases class II (A) WSQ_05070 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WSQ_05075 PF02768 DNA polymerase III beta subunit, C-terminal domain WSQ_05075 PF02767 DNA polymerase III beta subunit, central domain WSQ_05075 PF00712 DNA polymerase III beta subunit, N-terminal domain WSQ_05085 PF00486 Transcriptional regulatory protein, C terminal WSQ_05085 PF00072 Response regulator receiver domain WSQ_05100 PF00719 Inorganic pyrophosphatase WSQ_05130 PF00380 Ribosomal protein S9/S16 WSQ_05135 PF00572 Ribosomal protein L13 WSQ_05150 PF10609 NUBPL iron-transfer P-loop NTPase WSQ_05155 PF14572 Phosphoribosyl synthetase-associated domain WSQ_05155 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WSQ_05160 PF02686 Glu-tRNAGln amidotransferase C subunit WSQ_05185 PF00330 Aconitase family (aconitate hydratase) WSQ_05185 PF00694 Aconitase C-terminal domain WSQ_05195 PF02222 ATP-grasp domain WSQ_05195 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WSQ_05200 PF04379 ApaG domain WSQ_05335 PF01145 SPFH domain / Band 7 family WSQ_05340 PF01145 SPFH domain / Band 7 family WSQ_05345 PF13180 PDZ domain WSQ_05350 PF14622 Ribonuclease-III-like WSQ_05350 PF00035 Double-stranded RNA binding motif WSQ_05355 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 WSQ_05400 PF00675 Insulinase (Peptidase family M16) WSQ_05400 PF05193 Peptidase M16 inactive domain WSQ_05405 PF01252 Signal peptidase (SPase) II WSQ_05410 PF06574 FAD synthetase WSQ_05410 PF01687 Riboflavin kinase WSQ_05415 PF00462 Glutaredoxin WSQ_05430 PF02491 SHS2 domain inserted in FTSA WSQ_05435 PF10141 Single-strand DNA-specific exonuclease, C terminal domain WSQ_05435 PF01368 DHH family WSQ_05435 PF17768 RecJ OB domain WSQ_05435 PF02272 DHHA1 domain WSQ_05440 PF18324 Hypothetical protein TT1725 WSQ_05440 PF00180 Isocitrate/isopropylmalate dehydrogenase WSQ_05465 PF02104 SURF1 family WSQ_05470 PF00156 Phosphoribosyl transferase domain WSQ_05475 PF00899 ThiF family WSQ_05480 PF00462 Glutaredoxin WSQ_05495 PF02810 SEC-C motif WSQ_05495 PF01043 SecA preprotein cross-linking domain WSQ_05495 PF07517 SecA DEAD-like domain WSQ_05495 PF07516 SecA Wing and Scaffold domain WSQ_05500 PF01434 Peptidase family M41 WSQ_05500 PF06480 FtsH Extracellular WSQ_05500 PF17862 AAA+ lid domain WSQ_05500 PF00004 ATPase family associated with various cellular activities (AAA) WSQ_05515 PF02386 Cation transport protein WSQ_05520 PF02491 SHS2 domain inserted in FTSA WSQ_05550 PF00137 ATP synthase subunit C WSQ_05555 PF00119 ATP synthase A chain WSQ_05560 PF13685 Iron-containing alcohol dehydrogenase WSQ_05580 PF00132 Bacterial transferase hexapeptide (six repeats) WSQ_05585 PF02817 e3 binding domain WSQ_05585 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WSQ_05585 PF00364 Biotin-requiring enzyme WSQ_05590 PF00557 Metallopeptidase family M24 WSQ_05595 PF13847 Methyltransferase domain WSQ_05595 PF17827 PrmC N-terminal domain WSQ_05610 PF01578 Cytochrome C assembly protein WSQ_05610 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WSQ_05615 PF00115 Cytochrome C and Quinol oxidase polypeptide I WSQ_05620 PF01066 CDP-alcohol phosphatidyltransferase WSQ_05625 PF02142 MGS-like domain WSQ_05625 PF01808 AICARFT/IMPCHase bienzyme WSQ_05630 PF07977 FabA-like domain WSQ_05640 PF01103 Surface antigen WSQ_05640 PF07244 Surface antigen variable number repeat WSQ_05645 PF17820 PDZ domain WSQ_05645 PF02163 Peptidase family M50 WSQ_05660 PF00768 D-alanyl-D-alanine carboxypeptidase WSQ_05660 PF07943 Penicillin-binding protein 5, C-terminal domain WSQ_05675 PF12627 Probable RNA and SrmB- binding site of polymerase A WSQ_05675 PF13735 tRNA nucleotidyltransferase domain 2 putative WSQ_05675 PF01743 Poly A polymerase head domain WSQ_05680 PF00334 Nucleoside diphosphate kinase WSQ_05685 PF01381 Helix-turn-helix WSQ_05705 PF00154 recA bacterial DNA recombination protein WSQ_05710 PF08264 Anticodon-binding domain of tRNA WSQ_05710 PF00133 tRNA synthetases class I (I, L, M and V) WSQ_05725 PF00448 SRP54-type protein, GTPase domain WSQ_05725 PF02881 SRP54-type protein, helical bundle domain WSQ_05750 PF00285 Citrate synthase, C-terminal domain WSQ_05755 PF00117 Glutamine amidotransferase class-I WSQ_05755 PF00958 GMP synthase C terminal domain WSQ_05785 PF01617 Surface antigen WSQ_05805 PF00155 Aminotransferase class I and II WSQ_05810 PF00579 tRNA synthetases class I (W and Y) WSQ_05820 PF03951 Glutamine synthetase, beta-Grasp domain WSQ_05820 PF00120 Glutamine synthetase, catalytic domain WSQ_05825 PF00348 Polyprenyl synthetase WSQ_05875 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WSQ_05875 PF00364 Biotin-requiring enzyme WSQ_05875 PF02817 e3 binding domain WSQ_05880 PF01791 DeoC/LacD family aldolase WSQ_05905 PF00707 Translation initiation factor IF-3, C-terminal domain WSQ_05905 PF05198 Translation initiation factor IF-3, N-terminal domain WSQ_05910 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WSQ_05910 PF03129 Anticodon binding domain WSQ_05910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WSQ_05915 PF00994 Probable molybdopterin binding domain WSQ_05915 PF18146 Damage-inducible protein CinA KH domain WSQ_05915 PF02464 Competence-damaged protein WSQ_05920 PF01245 Ribosomal protein L19 WSQ_05925 PF01746 tRNA (Guanine-1)-methyltransferase WSQ_05930 PF01782 RimM N-terminal domain WSQ_05945 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WSQ_05945 PF01578 Cytochrome C assembly protein WSQ_05965 PF02542 YgbB family WSQ_05970 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WSQ_05970 PF02542 YgbB family WSQ_05980 PF00731 AIR carboxylase WSQ_05990 PF00216 Bacterial DNA-binding protein WSQ_05995 PF13411 MerR HTH family regulatory protein WSQ_06010 PF06071 Protein of unknown function (DUF933) WSQ_06010 PF01926 50S ribosome-binding GTPase WSQ_06025 PF01926 50S ribosome-binding GTPase WSQ_06025 PF12631 MnmE helical domain WSQ_06025 PF10396 GTP-binding protein TrmE N-terminus WSQ_06035 PF02130 Uncharacterized protein family UPF0054 WSQ_06045 PF00091 Tubulin/FtsZ family, GTPase domain WSQ_06045 PF12327 FtsZ family, C-terminal domain WSQ_06055 PF02075 Crossover junction endodeoxyribonuclease RuvC WSQ_06065 PF02441 Flavoprotein WSQ_06065 PF04127 DNA / pantothenate metabolism flavoprotein WSQ_06070 PF17191 RecG wedge domain WSQ_06070 PF00270 DEAD/DEAH box helicase WSQ_06070 PF00271 Helicase conserved C-terminal domain WSQ_06075 PF01370 NAD dependent epimerase/dehydratase family WSQ_06080 PF00156 Phosphoribosyl transferase domain WSQ_06080 PF13537 Glutamine amidotransferase domain WSQ_06085 PF01195 Peptidyl-tRNA hydrolase WSQ_06090 PF01386 Ribosomal L25p family WSQ_06090 PF14693 Ribosomal protein TL5, C-terminal domain WSQ_06095 PF00156 Phosphoribosyl transferase domain WSQ_06100 PF00999 Sodium/hydrogen exchanger family WSQ_06100 PF02254 TrkA-N domain WSQ_06115 PF02779 Transketolase, pyrimidine binding domain WSQ_06115 PF02780 Transketolase, C-terminal domain WSQ_06130 PF01523 Putative modulator of DNA gyrase WSQ_06165 PF00925 GTP cyclohydrolase II WSQ_06175 PF00162 Phosphoglycerate kinase WSQ_06180 PF13742 OB-fold nucleic acid binding domain WSQ_06180 PF02601 Exonuclease VII, large subunit WSQ_06205 PF02355 Protein export membrane protein WSQ_06205 PF07549 SecD/SecF GG Motif WSQ_06210 PF02021 Uncharacterised protein family UPF0102 WSQ_06230 PF01668 SmpB protein WSQ_06235 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WSQ_06235 PF00925 GTP cyclohydrolase II WSQ_06240 PF03449 Transcription elongation factor, N-terminal WSQ_06240 PF01272 Transcription elongation factor, GreA/GreB, C-term WSQ_06245 PF02874 ATP synthase alpha/beta family, beta-barrel domain WSQ_06245 PF00306 ATP synthase alpha/beta chain, C terminal domain WSQ_06245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WSQ_06250 PF00213 ATP synthase delta (OSCP) subunit WSQ_06275 PF02687 FtsX-like permease family WSQ_06275 PF12704 MacB-like periplasmic core domain WSQ_06290 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE WSQ_06295 PF01027 Inhibitor of apoptosis-promoting Bax1 WSQ_06300 PF02774 Semialdehyde dehydrogenase, dimerisation domain WSQ_06300 PF01118 Semialdehyde dehydrogenase, NAD binding domain WSQ_06310 PF12169 DNA polymerase III subunits gamma and tau domain III WSQ_06315 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WSQ_06315 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WSQ_06335 PF00154 recA bacterial DNA recombination protein WSQ_06360 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WSQ_06380 PF02355 Protein export membrane protein WSQ_06385 PF02151 UvrB/uvrC motif WSQ_06385 PF17757 UvrB interaction domain WSQ_06385 PF12344 Ultra-violet resistance protein B WSQ_06385 PF00271 Helicase conserved C-terminal domain WSQ_06385 PF04851 Type III restriction enzyme, res subunit WSQ_06410 PF01327 Polypeptide deformylase WSQ_06415 PF01553 Acyltransferase WSQ_06420 PF01649 Ribosomal protein S20 WSQ_06425 PF01327 Polypeptide deformylase WSQ_06435 PF01790 Prolipoprotein diacylglyceryl transferase WSQ_06440 PF03023 Lipid II flippase MurJ WSQ_06525 PF01258 Prokaryotic dksA/traR C4-type zinc finger WSQ_06540 PF02534 Type IV secretory system Conjugative DNA transfer WSQ_06545 PF00437 Type II/IV secretion system protein WSQ_06550 PF03743 Bacterial conjugation TrbI-like protein WSQ_06575 PF02463 RecF/RecN/SMC N terminal domain