WSQ_00005 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs WSQ_00005 SM00475 5'-3' exonuclease WSQ_00005 SM00482 DNA polymerase A domain WSQ_00020 SM00382 ATPases associated with a variety of cellular activities WSQ_00075 SM00271 DnaJ molecular chaperone homology domain WSQ_00085 SM01207 WSQ_00085 WSQ_00105 SM01091 Transporter associated domain WSQ_00190 SM00382 ATPases associated with a variety of cellular activities WSQ_00195 SM00919 Malic enzyme, NAD binding domain WSQ_00195 SM01274 WSQ_00195 WSQ_00305 SM00357 Cold shock protein domain WSQ_00305 SM00382 ATPases associated with a variety of cellular activities WSQ_00305 SM00959 Rho termination factor, N-terminal domain WSQ_00315 SM00271 DnaJ molecular chaperone homology domain WSQ_00320 SM00932 Scaffold protein Nfu/NifU N terminal WSQ_00430 SM00116 Domain in cystathionine beta-synthase and other proteins. WSQ_00430 SM01240 WSQ_00430 WSQ_00450 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. WSQ_00470 SM00978 WSQ_00470 WSQ_00540 SM00487 DEAD-like helicases superfamily WSQ_00540 SM00490 helicase superfamily c-terminal domain WSQ_00540 SM00982 WSQ_00540 WSQ_00540 SM01058 CarD-like/TRCF domain WSQ_00630 SM00865 Tubulin/FtsZ family, C-terminal domain WSQ_00665 SM00357 Cold shock protein domain WSQ_00670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WSQ_00670 SM00387 Histidine kinase-like ATPases WSQ_00670 SM00388 His Kinase A (phosphoacceptor) domain WSQ_00675 SM00474 3'-5' exonuclease WSQ_00680 SM00292 breast cancer carboxy-terminal domain WSQ_00680 SM00532 Ligase N family WSQ_00760 SM01219 WSQ_00760 WSQ_00765 SM00382 ATPases associated with a variety of cellular activities WSQ_00820 SM00382 ATPases associated with a variety of cellular activities WSQ_00835 SM00072 Guanylate kinase homologues. WSQ_00915 SM00749 bacterial OsmY and nodulation domain WSQ_00935 SM00382 ATPases associated with a variety of cellular activities WSQ_00935 SM00448 cheY-homologous receiver domain WSQ_01040 SM00729 Elongator protein 3, MiaB family, Radical SAM WSQ_01040 SM00876 Biotin and Thiamin Synthesis associated domain WSQ_01065 SM01228 WSQ_01065 WSQ_01070 SM01211 WSQ_01070 WSQ_01130 SM00382 ATPases associated with a variety of cellular activities WSQ_01130 SM01086 C-terminal, D2-small domain, of ClpB protein WSQ_01155 SM00883 Chaperonin 10 Kd subunit WSQ_01190 SM00851 MGS-like domain WSQ_01190 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WSQ_01210 SM00382 ATPases associated with a variety of cellular activities WSQ_01215 SM00829 Enoylreductase WSQ_01225 SM00248 ankyrin repeats WSQ_01230 SM00244 prohibitin homologues WSQ_01290 SM00316 Ribosomal protein S1-like RNA-binding domain WSQ_01300 SM00967 RNA 2'-O ribose methyltransferase substrate binding WSQ_01320 SM01403 WSQ_01320 WSQ_01340 SM01382 WSQ_01340 WSQ_01340 SM01383 WSQ_01340 WSQ_01355 SM00322 K homology RNA-binding domain WSQ_01375 SM01374 WSQ_01375 WSQ_01380 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. WSQ_01440 SM00662 RNA polymerases D WSQ_01450 SM00873 B3/4 domain WSQ_01450 SM00874 tRNA synthetase B5 domain WSQ_01450 SM00896 Ferredoxin-fold anticodon binding domain WSQ_01490 SM00903 Flavin reductase like domain WSQ_01500 SM00382 ATPases associated with a variety of cellular activities WSQ_01555 SM00861 Transketolase, pyrimidine binding domain WSQ_01585 SM00732 Likely ribonuclease with RNase H fold. WSQ_01600 SM00788 Adenylosuccinate synthetase WSQ_01620 SM00861 Transketolase, pyrimidine binding domain WSQ_01670 SM00382 ATPases associated with a variety of cellular activities WSQ_01670 SM00962 SRP54-type protein, GTPase domain WSQ_01670 SM00963 SRP54-type protein, helical bundle domain WSQ_01715 SM00487 DEAD-like helicases superfamily WSQ_01715 SM00490 helicase superfamily c-terminal domain WSQ_01750 SM00878 Biotin carboxylase C-terminal domain WSQ_01770 SM00729 Elongator protein 3, MiaB family, Radical SAM WSQ_01805 SM00382 ATPases associated with a variety of cellular activities WSQ_01850 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain WSQ_01905 SM00564 beta-propeller repeat WSQ_02015 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain WSQ_02015 SM01232 WSQ_02015 WSQ_02045 SM00382 ATPases associated with a variety of cellular activities WSQ_02050 SM00937 WSQ_02050 WSQ_02110 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WSQ_02175 SM00316 Ribosomal protein S1-like RNA-binding domain WSQ_02175 SM00322 K homology RNA-binding domain WSQ_02200 SM00382 ATPases associated with a variety of cellular activities WSQ_02200 SM01086 C-terminal, D2-small domain, of ClpB protein WSQ_02205 SM00838 Elongation factor G C-terminus WSQ_02285 SM00937 WSQ_02285 WSQ_02295 SM00845 GatB domain WSQ_02315 SM00382 ATPases associated with a variety of cellular activities WSQ_02315 SM00760 Bacterial dnaA protein helix-turn-helix domain WSQ_02345 SM00937 WSQ_02345 WSQ_02415 SM00382 ATPases associated with a variety of cellular activities WSQ_02425 SM00116 Domain in cystathionine beta-synthase and other proteins. WSQ_02425 SM00924 MgtE intracellular N domain WSQ_02490 SM01409 WSQ_02490 WSQ_02540 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family WSQ_02640 SM00841 Elongation factor P, C-terminal WSQ_02640 SM01185 WSQ_02640 WSQ_02650 SM00363 S4 RNA-binding domain WSQ_02655 SM00267 diguanylate cyclase WSQ_02655 SM00448 cheY-homologous receiver domain WSQ_02680 SM00840 WSQ_02680 WSQ_02735 SM00400 zinc finger WSQ_02735 SM00493 WSQ_02735 WSQ_02740 SM00534 ATPase domain of DNA mismatch repair MUTS family WSQ_02780 SM00387 Histidine kinase-like ATPases WSQ_02780 SM00388 His Kinase A (phosphoacceptor) domain WSQ_02780 SM00448 cheY-homologous receiver domain WSQ_02835 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain WSQ_02835 SM00437 Bacterial DNA topoisomerase I DNA-binding domain WSQ_02835 SM00493 WSQ_02835 WSQ_02950 SM00650 Ribosomal RNA adenine dimethylases WSQ_02980 SM00905 Dihydroneopterin aldolase WSQ_03160 SM00822 WSQ_03160 WSQ_03295 SM01192 WSQ_03295 WSQ_03295 SM01193 WSQ_03295 WSQ_03320 SM00836 DALR anticodon binding domain WSQ_03320 SM01016 Arginyl tRNA synthetase N terminal dom WSQ_03350 SM00248 ankyrin repeats WSQ_03360 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WSQ_03375 SM00387 Histidine kinase-like ATPases WSQ_03375 SM00433 TopoisomeraseII WSQ_03440 SM00479 WSQ_03440 WSQ_03485 SM00248 ankyrin repeats WSQ_03555 SM00382 ATPases associated with a variety of cellular activities WSQ_03590 SM00838 Elongation factor G C-terminus WSQ_03600 SM00316 Ribosomal protein S1-like RNA-binding domain WSQ_03600 SM00322 K homology RNA-binding domain WSQ_03605 SM01387 WSQ_03605 WSQ_03665 SM00382 ATPases associated with a variety of cellular activities WSQ_03670 SM00411 bacterial (prokaryotic) histone like domain WSQ_03940 SM01004 Delta-aminolevulinic acid dehydratase WSQ_03960 SM00533 DNA-binding domain of DNA mismatch repair MUTS family WSQ_03960 SM00534 ATPase domain of DNA mismatch repair MUTS family WSQ_03985 SM00861 Transketolase, pyrimidine binding domain WSQ_04000 SM00998 Adenylosuccinate lyase C-terminus WSQ_04060 SM00729 Elongator protein 3, MiaB family, Radical SAM WSQ_04080 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WSQ_04080 SM00465 GIY-YIG type nucleases (URI domain) WSQ_04100 SM00387 Histidine kinase-like ATPases WSQ_04125 SM00478 endonuclease III WSQ_04125 SM00525 WSQ_04125 WSQ_04130 SM00434 DNA Topoisomerase IV WSQ_04275 SM00248 ankyrin repeats WSQ_04285 SM00825 Beta-ketoacyl synthase WSQ_04330 SM00853 MutL C terminal dimerisation domain WSQ_04330 SM01340 WSQ_04330 WSQ_04355 SM00387 Histidine kinase-like ATPases WSQ_04355 SM00388 His Kinase A (phosphoacceptor) domain WSQ_04405 SM00843 WSQ_04405 WSQ_04415 SM01091 Transporter associated domain WSQ_04430 SM00450 Rhodanese Homology Domain WSQ_04460 SM00382 ATPases associated with a variety of cellular activities WSQ_04460 SM00464 Found in ATP-dependent protease La (LON) WSQ_04465 SM00382 ATPases associated with a variety of cellular activities WSQ_04465 SM00994 ClpX C4-type zinc finger WSQ_04465 SM01086 C-terminal, D2-small domain, of ClpB protein WSQ_04535 SM00382 ATPases associated with a variety of cellular activities WSQ_04550 SM00382 ATPases associated with a variety of cellular activities WSQ_04560 SM00493 WSQ_04560 WSQ_04565 SM00363 S4 RNA-binding domain WSQ_04565 SM01390 WSQ_04565 WSQ_04625 SM00481 DNA polymerase alpha chain like domain WSQ_04725 SM00663 RNA polymerase I subunit A N-terminus WSQ_04750 SM00649 Ribosomal protein L11/L12 WSQ_04755 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. WSQ_04775 SM00838 Elongation factor G C-terminus WSQ_04775 SM00889 Elongation factor G, domain IV WSQ_04790 SM00849 Metallo-beta-lactamase superfamily WSQ_04865 SM00881 CoA binding domain WSQ_04890 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain WSQ_04900 SM01230 WSQ_04900 WSQ_04905 SM00849 Metallo-beta-lactamase superfamily WSQ_04945 SM00357 Cold shock protein domain WSQ_04945 SM00382 ATPases associated with a variety of cellular activities WSQ_04945 SM00959 Rho termination factor, N-terminal domain WSQ_04955 SM00382 ATPases associated with a variety of cellular activities WSQ_04955 SM01086 C-terminal, D2-small domain, of ClpB protein WSQ_05040 SM01209 WSQ_05040 WSQ_05040 SM01210 WSQ_05040 WSQ_05045 SM01323 WSQ_05045 WSQ_05075 SM00480 DNA polymerase III beta subunit WSQ_05080 SM00474 3'-5' exonuclease WSQ_05085 SM00448 cheY-homologous receiver domain WSQ_05085 SM00862 Transcriptional regulatory protein, C terminal WSQ_05095 SM00530 Helix-turn-helix XRE-family like proteins WSQ_05155 SM01400 WSQ_05155 WSQ_05335 SM00244 prohibitin homologues WSQ_05340 SM00244 prohibitin homologues WSQ_05345 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. WSQ_05350 SM00358 Double-stranded RNA binding motif WSQ_05350 SM00535 Ribonuclease III family WSQ_05410 SM00904 Riboflavin kinase WSQ_05430 SM00842 Cell division protein FtsA WSQ_05440 SM01329 WSQ_05440 WSQ_05495 SM00957 SecA DEAD-like domain WSQ_05495 SM00958 SecA preprotein cross-linking domain WSQ_05500 SM00382 ATPases associated with a variety of cellular activities WSQ_05520 SM00842 Cell division protein FtsA WSQ_05625 SM00798 AICARFT/IMPCHase bienzyme WSQ_05625 SM00851 MGS-like domain WSQ_05635 SM00935 Outer membrane protein (OmpH-like) WSQ_05645 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. WSQ_05660 SM00936 Penicillin-binding protein 5, C-terminal domain WSQ_05680 SM00562 WSQ_05680 WSQ_05685 SM00530 Helix-turn-helix XRE-family like proteins WSQ_05725 SM00382 ATPases associated with a variety of cellular activities WSQ_05725 SM00962 SRP54-type protein, GTPase domain WSQ_05725 SM00963 SRP54-type protein, helical bundle domain WSQ_05820 SM01230 WSQ_05820 WSQ_05880 SM01133 WSQ_05880 WSQ_05910 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain WSQ_05980 SM01001 AIR carboxylase WSQ_05990 SM00411 bacterial (prokaryotic) histone like domain WSQ_05995 SM00422 helix_turn_helix, mercury resistance WSQ_06045 SM00864 Tubulin/FtsZ family, GTPase domain WSQ_06045 SM00865 Tubulin/FtsZ family, C-terminal domain WSQ_06070 SM00487 DEAD-like helicases superfamily WSQ_06070 SM00490 helicase superfamily c-terminal domain WSQ_06115 SM00861 Transketolase, pyrimidine binding domain WSQ_06155 SM00028 Tetratricopeptide repeats WSQ_06300 SM00859 Semialdehyde dehydrogenase, NAD binding domain WSQ_06310 SM00382 ATPases associated with a variety of cellular activities WSQ_06315 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WSQ_06335 SM00382 ATPases associated with a variety of cellular activities WSQ_06385 SM00487 DEAD-like helicases superfamily WSQ_06385 SM00490 helicase superfamily c-terminal domain WSQ_06405 SM00986 Uracil DNA glycosylase superfamily WSQ_06405 SM00987 UreE urease accessory protein, C-terminal domain WSQ_06415 SM00563 Phosphate acyltransferases