locus-tag class description P029_00005 PF01367 5'-3' exonuclease, C-terminal SAM fold P029_00005 PF00476 DNA polymerase family A P029_00005 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain P029_00010 PF00834 Ribulose-phosphate 3 epimerase family P029_00015 PF02405 Permease MlaE P029_00020 PF00005 ABC transporter P029_00035 PF00438 S-adenosylmethionine synthetase, N-terminal domain P029_00035 PF02773 S-adenosylmethionine synthetase, C-terminal domain P029_00035 PF02772 S-adenosylmethionine synthetase, central domain P029_00045 PF01494 FAD binding domain P029_00060 PF02091 Glycyl-tRNA synthetase alpha subunit P029_00065 PF02092 Glycyl-tRNA synthetase beta subunit P029_00065 PF05746 DALR anticodon binding domain P029_00070 PF00226 DnaJ domain P029_00070 PF00684 DnaJ central domain P029_00070 PF01556 DnaJ C terminal domain P029_00075 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain P029_00075 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain P029_00080 PF02660 Glycerol-3-phosphate acyltransferase P029_00085 PF02075 Crossover junction endodeoxyribonuclease RuvC P029_00090 PF00510 Cytochrome c oxidase subunit III P029_00095 PF01208 Uroporphyrinogen decarboxylase (URO-D) P029_00100 PF00571 CBS domain P029_00100 PF03471 Transporter associated domain P029_00110 PF04860 Phage portal protein P029_00115 PF08241 Methyltransferase domain P029_00120 PF02445 Quinolinate synthetase A protein P029_00125 PF00037 4Fe-4S binding domain P029_00125 PF11953 Domain of unknown function (DUF3470) P029_00150 PF00579 tRNA synthetases class I (W and Y) P029_00155 PF01025 GrpE P029_00160 PF01872 RibD C-terminal domain P029_00160 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region P029_00165 PF06418 CTP synthase N-terminus P029_00165 PF00117 Glutamine amidotransferase class-I P029_00175 PF02899 Phage integrase, N-terminal SAM-like domain P029_00175 PF00589 Phage integrase family P029_00180 PF00005 ABC transporter P029_00185 PF01515 Phosphate acetyl/butaryl transferase P029_00185 PF00390 Malic enzyme, N-terminal domain P029_00185 PF03949 Malic enzyme, NAD binding domain P029_00195 PF00361 Proton-conducting membrane transporter P029_00205 PF02470 MlaD protein P029_00215 PF03477 ATP cone domain P029_00235 PF13416 Bacterial extracellular solute-binding protein P029_00240 PF03966 Trm112p-like protein P029_00245 PF00083 Sugar (and other) transporter P029_00245 PF08946 Osmosensory transporter coiled coil P029_00250 PF00886 Ribosomal protein S16 P029_00260 PF00438 S-adenosylmethionine synthetase, N-terminal domain P029_00260 PF02772 S-adenosylmethionine synthetase, central domain P029_00260 PF02773 S-adenosylmethionine synthetase, C-terminal domain P029_00265 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain P029_00265 PF01409 tRNA synthetases class II core domain (F) P029_00270 PF00453 Ribosomal protein L20 P029_00275 PF01632 Ribosomal protein L35 P029_00285 PF07497 Rho termination factor, RNA-binding domain P029_00285 PF07498 Rho termination factor, N-terminal domain P029_00285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain P029_00290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain P029_00290 PF07992 Pyridine nucleotide-disulphide oxidoreductase P029_00295 PF07992 Pyridine nucleotide-disulphide oxidoreductase P029_00295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain P029_00300 PF01556 DnaJ C terminal domain P029_00300 PF00684 DnaJ central domain P029_00300 PF00226 DnaJ domain P029_00305 PF01106 NifU-like domain P029_00320 PF05690 Thiazole biosynthesis protein ThiG P029_00330 PF00749 tRNA synthetases class I (E and Q), catalytic domain P029_00370 PF02609 Exonuclease VII small subunit P029_00375 PF00085 Thioredoxin P029_00385 PF00676 Dehydrogenase E1 component P029_00390 PF12146 Serine aminopeptidase, S33 P029_00405 PF00478 IMP dehydrogenase / GMP reductase domain P029_00405 PF00571 CBS domain P029_00415 PF00478 IMP dehydrogenase / GMP reductase domain P029_00415 PF00571 CBS domain P029_00420 PF01513 ATP-NAD kinase P029_00435 PF00698 Acyl transferase domain P029_00440 PF02223 Thymidylate kinase P029_00455 PF02556 Preprotein translocase subunit SecB P029_00460 PF13462 Thioredoxin P029_00465 PF05193 Peptidase M16 inactive domain P029_00465 PF00675 Insulinase (Peptidase family M16) P029_00480 PF00696 Amino acid kinase family P029_00485 PF00677 Lumazine binding domain P029_00490 PF02559 CarD-like/TRCF domain P029_00490 PF00270 DEAD/DEAH box helicase P029_00490 PF00271 Helicase conserved C-terminal domain P029_00490 PF03461 TRCF domain P029_00490 PF17757 UvrB interaction domain P029_00495 PF00075 RNase H P029_00505 PF00696 Amino acid kinase family P029_00510 PF01765 Ribosome recycling factor P029_00545 PF01259 SAICAR synthetase P029_00550 PF03129 Anticodon binding domain P029_00550 PF13393 Histidyl-tRNA synthetase P029_00560 PF02628 Cytochrome oxidase assembly protein P029_00565 PF00005 ABC transporter P029_00585 PF00313 'Cold-shock' DNA-binding domain P029_00590 PF00672 HAMP domain P029_00590 PF00989 PAS fold P029_00590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P029_00590 PF00512 His Kinase A (phospho-acceptor) domain P029_00595 PF01612 3'-5' exonuclease P029_00595 PF00570 HRDC domain P029_00600 PF00533 BRCA1 C Terminus (BRCT) domain P029_00600 PF12826 Helix-hairpin-helix motif P029_00600 PF03120 NAD-dependent DNA ligase OB-fold domain P029_00600 PF03119 NAD-dependent DNA ligase C4 zinc finger domain P029_00600 PF01653 NAD-dependent DNA ligase adenylation domain P029_00605 PF00462 Glutaredoxin P029_00615 PF08534 Redoxin P029_00645 PF01250 Ribosomal protein S6 P029_00650 PF01084 Ribosomal protein S18 P029_00655 PF01281 Ribosomal protein L9, N-terminal domain P029_00655 PF03948 Ribosomal protein L9, C-terminal domain P029_00660 PF00464 Serine hydroxymethyltransferase P029_00670 PF00005 ABC transporter P029_00670 PF00664 ABC transporter transmembrane region P029_00680 PF02910 Fumarate reductase flavoprotein C-term P029_00680 PF00890 FAD binding domain P029_00685 PF13237 4Fe-4S dicluster domain P029_00685 PF13085 2Fe-2S iron-sulfur cluster binding domain P029_00690 PF02910 Fumarate reductase flavoprotein C-term P029_00690 PF00890 FAD binding domain P029_00695 PF13237 4Fe-4S dicluster domain P029_00695 PF13085 2Fe-2S iron-sulfur cluster binding domain P029_00700 PF02511 Thymidylate synthase complementing protein P029_00705 PF07690 Major Facilitator Superfamily P029_00715 PF02091 Glycyl-tRNA synthetase alpha subunit P029_00720 PF05491 RuvB C-terminal winged helix domain P029_00720 PF17864 RuvB AAA lid domain P029_00720 PF05496 Holliday junction DNA helicase RuvB P-loop domain P029_00725 PF01330 RuvA N terminal domain P029_00725 PF07499 RuvA, C-terminal domain P029_00730 PF01578 Cytochrome C assembly protein P029_00735 PF00625 Guanylate kinase P029_00755 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain P029_00755 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain P029_00775 PF00561 alpha/beta hydrolase fold P029_00780 PF00034 Cytochrome c P029_00785 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus P029_00785 PF00361 Proton-conducting membrane transporter P029_00785 PF13244 Domain of unknown function (DUF4040) P029_00790 PF00391 PEP-utilising enzyme, mobile domain P029_00790 PF02896 PEP-utilising enzyme, TIM barrel domain P029_00790 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain P029_00800 PF13419 Haloacid dehalogenase-like hydrolase P029_00815 PF02938 GAD domain P029_00815 PF01336 OB-fold nucleic acid binding domain P029_00815 PF00152 tRNA synthetases class II (D, K and N) P029_00820 PF04972 BON domain P029_00825 PF02951 Prokaryotic glutathione synthetase, N-terminal domain P029_00825 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain P029_00830 PF08478 POTRA domain, FtsQ-type P029_00830 PF03799 Cell division protein FtsQ P029_00835 PF00158 Sigma-54 interaction domain P029_00835 PF00072 Response regulator receiver domain P029_00835 PF02954 Bacterial regulatory protein, Fis family P029_00840 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus P029_00840 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus P029_00845 PF02899 Phage integrase, N-terminal SAM-like domain P029_00845 PF00589 Phage integrase family P029_00860 PF02769 AIR synthase related protein, C-terminal domain P029_00860 PF00586 AIR synthase related protein, N-terminal domain P029_00890 PF02769 AIR synthase related protein, C-terminal domain P029_00890 PF00586 AIR synthase related protein, N-terminal domain P029_00900 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) P029_00905 PF00586 AIR synthase related protein, N-terminal domain P029_00905 PF02769 AIR synthase related protein, C-terminal domain P029_00905 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain P029_00930 PF04055 Radical SAM superfamily P029_00930 PF06968 Biotin and Thiamin Synthesis associated domain P029_00945 PF01476 LysM domain P029_00945 PF01551 Peptidase family M23 P029_00950 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded P029_00955 PF01134 Glucose inhibited division protein A P029_00955 PF13932 GidA associated domain P029_00960 PF02769 AIR synthase related protein, C-terminal domain P029_00960 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal P029_00960 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain P029_00985 PF00551 Formyl transferase P029_00990 PF00883 Cytosol aminopeptidase family, catalytic domain P029_00990 PF02789 Cytosol aminopeptidase family, N-terminal domain P029_00995 PF00775 Dioxygenase P029_01010 PF07724 AAA domain (Cdc48 subfamily) P029_01010 PF17871 AAA lid domain P029_01010 PF02861 Clp amino terminal domain, pathogenicity island component P029_01010 PF10431 C-terminal, D2-small domain, of ClpB protein P029_01010 PF00004 ATPase family associated with various cellular activities (AAA) P029_01025 PF00118 TCP-1/cpn60 chaperonin family P029_01030 PF00166 Chaperonin 10 Kd subunit P029_01035 PF04002 RadC-like JAB domain P029_01040 PF03099 Biotin/lipoate A/B protein ligase family P029_01045 PF01979 Amidohydrolase family P029_01050 PF04127 DNA / pantothenate metabolism flavoprotein P029_01050 PF02441 Flavoprotein P029_01055 PF00206 Lyase P029_01055 PF10415 Fumarase C C-terminus P029_01065 PF02142 MGS-like domain P029_01065 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain P029_01065 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain P029_01075 PF00809 Pterin binding enzyme P029_01080 PF00005 ABC transporter P029_01080 PF00664 ABC transporter transmembrane region P029_01085 PF00107 Zinc-binding dehydrogenase P029_01085 PF08240 Alcohol dehydrogenase GroES-like domain P029_01090 PF13361 UvrD-like helicase C-terminal domain P029_01090 PF12705 PD-(D/E)XK nuclease superfamily P029_01090 PF00580 UvrD/REP helicase N-terminal domain P029_01115 PF00762 Ferrochelatase P029_01140 PF00456 Transketolase, thiamine diphosphate binding domain P029_01140 PF02780 Transketolase, C-terminal domain P029_01140 PF02779 Transketolase, pyrimidine binding domain P029_01150 PF00216 Bacterial DNA-binding protein P029_01155 PF01343 Peptidase family S49 P029_01160 PF00575 S1 RNA binding domain P029_01165 PF02224 Cytidylate kinase P029_01170 PF08032 RNA 2'-O ribose methyltransferase substrate binding P029_01170 PF00588 SpoU rRNA Methylase family P029_01185 PF00009 Elongation factor Tu GTP binding domain P029_01185 PF03144 Elongation factor Tu domain 2 P029_01185 PF03143 Elongation factor Tu C-terminal domain P029_01190 PF00338 Ribosomal protein S10p/S20e P029_01195 PF00297 Ribosomal protein L3 P029_01200 PF00573 Ribosomal protein L4/L1 family P029_01205 PF00276 Ribosomal protein L23 P029_01210 PF00181 Ribosomal Proteins L2, RNA binding domain P029_01210 PF03947 Ribosomal Proteins L2, C-terminal domain P029_01215 PF00203 Ribosomal protein S19 P029_01220 PF00237 Ribosomal protein L22p/L17e P029_01225 PF07650 KH domain P029_01225 PF00189 Ribosomal protein S3, C-terminal domain P029_01230 PF00252 Ribosomal protein L16p/L10e P029_01235 PF00831 Ribosomal L29 protein P029_01240 PF00366 Ribosomal protein S17 P029_01245 PF00238 Ribosomal protein L14p/L23e P029_01250 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 P029_01250 PF00467 KOW motif P029_01255 PF00281 Ribosomal protein L5 P029_01255 PF00673 ribosomal L5P family C-terminus P029_01260 PF00253 Ribosomal protein S14p/S29e P029_01265 PF00410 Ribosomal protein S8 P029_01270 PF00347 Ribosomal protein L6 P029_01275 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast P029_01280 PF03719 Ribosomal protein S5, C-terminal domain P029_01280 PF00333 Ribosomal protein S5, N-terminal domain P029_01285 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A P029_01290 PF00344 SecY translocase P029_01295 PF05191 Adenylate kinase, active site lid P029_01300 PF00416 Ribosomal protein S13/S18 P029_01305 PF00411 Ribosomal protein S11 P029_01310 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain P029_01310 PF01000 RNA polymerase Rpb3/RpoA insert domain P029_01310 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain P029_01315 PF01196 Ribosomal protein L17 P029_01320 PF03147 Ferredoxin-fold anticodon binding domain P029_01320 PF03483 B3/4 domain P029_01320 PF03484 tRNA synthetase B5 domain P029_01320 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain P029_01320 PF01588 Putative tRNA binding domain P029_01325 PF00753 Metallo-beta-lactamase superfamily P029_01325 PF13567 Domain of unknown function (DUF4131) P029_01325 PF03772 Competence protein P029_01335 PF00825 Ribonuclease P P029_01340 PF01040 UbiA prenyltransferase family P029_01345 PF01613 Flavin reductase like domain P029_01350 PF00005 ABC transporter P029_01355 PF01702 Queuine tRNA-ribosyltransferase P029_01360 PF01783 Ribosomal L32p protein family P029_01365 PF02504 Fatty acid synthesis protein P029_01370 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III P029_01370 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal P029_01385 PF14437 MafB19-like deaminase P029_01395 PF00772 DnaB-like helicase N terminal domain P029_01395 PF03796 DnaB-like helicase C terminal domain P029_01405 PF01266 FAD dependent oxidoreductase P029_01420 PF00348 Polyprenyl synthetase P029_01430 PF03477 ATP cone domain P029_01430 PF02867 Ribonucleotide reductase, barrel domain P029_01430 PF00317 Ribonucleotide reductase, all-alpha domain P029_01435 PF03652 Holliday junction resolvase P029_01440 PF00709 Adenylosuccinate synthetase P029_01445 PF18319 PriA DNA helicase Cys-rich region (CRR) domain P029_01445 PF17764 3′ DNA-binding domain (3′BD) P029_01445 PF00271 Helicase conserved C-terminal domain P029_01445 PF00270 DEAD/DEAH box helicase P029_01445 PF18074 Primosomal protein N C-terminal domain P029_01450 PF00691 OmpA family P029_01460 PF02779 Transketolase, pyrimidine binding domain P029_01460 PF02780 Transketolase, C-terminal domain P029_01460 PF00456 Transketolase, thiamine diphosphate binding domain P029_01470 PF03334 Na+/H+ antiporter subunit P029_01480 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter P029_01490 PF12111 Polyribonucleotide phosphorylase C terminal P029_01490 PF00575 S1 RNA binding domain P029_01490 PF10150 Ribonuclease E/G family P029_01495 PF00012 Hsp70 protein P029_01510 PF00361 Proton-conducting membrane transporter P029_01515 PF00448 SRP54-type protein, GTPase domain P029_01515 PF02881 SRP54-type protein, helical bundle domain P029_01515 PF02978 Signal peptide binding domain P029_01520 PF01926 50S ribosome-binding GTPase P029_01520 PF07650 KH domain P029_01550 PF18074 Primosomal protein N C-terminal domain P029_01550 PF17764 3′ DNA-binding domain (3′BD) P029_01550 PF00270 DEAD/DEAH box helicase P029_01550 PF00271 Helicase conserved C-terminal domain P029_01550 PF18319 PriA DNA helicase Cys-rich region (CRR) domain P029_01555 PF00830 Ribosomal L28 family P029_01560 PF00849 RNA pseudouridylate synthase P029_01565 PF02785 Biotin carboxylase C-terminal domain P029_01565 PF00289 Biotin carboxylase, N-terminal domain P029_01565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain P029_01585 PF04055 Radical SAM superfamily P029_01595 PF00528 Binding-protein-dependent transport system inner membrane component P029_01600 PF02777 Iron/manganese superoxide dismutases, C-terminal domain P029_01600 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain P029_01610 PF03135 CagE, TrbE, VirB family, component of type IV transporter system P029_01620 PF04610 TrbL/VirB6 plasmid conjugal transfer protein P029_01625 PF04610 TrbL/VirB6 plasmid conjugal transfer protein P029_01630 PF04610 TrbL/VirB6 plasmid conjugal transfer protein P029_01645 PF00692 dUTPase P029_01650 PF02401 LytB protein P029_01655 PF00117 Glutamine amidotransferase class-I P029_01655 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain P029_01690 PF01676 Metalloenzyme superfamily P029_01690 PF06415 BPG-independent PGAM N-terminus (iPGM_N) P029_01695 PF01926 50S ribosome-binding GTPase P029_01695 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal P029_01710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain P029_01710 PF07992 Pyridine nucleotide-disulphide oxidoreductase P029_01720 PF01176 Translation initiation factor 1A / IF-1 P029_01725 PF02545 Maf-like protein P029_01730 PF00318 Ribosomal protein S2 P029_01735 PF00889 Elongation factor TS P029_01740 PF00950 ABC 3 transport family P029_01750 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal P029_01750 PF00355 Rieske [2Fe-2S] domain P029_01755 PF00032 Cytochrome b(C-terminal)/b6/petD P029_01755 PF00033 Cytochrome b/b6/petB P029_01760 PF02167 Cytochrome C1 family P029_01785 PF00749 tRNA synthetases class I (E and Q), catalytic domain P029_01795 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain P029_01795 PF06827 Zinc finger found in FPG and IleRS P029_01795 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain P029_01800 PF13932 GidA associated domain P029_01800 PF01134 Glucose inhibited division protein A P029_01805 PF13932 GidA associated domain P029_01805 PF01134 Glucose inhibited division protein A P029_01810 PF01039 Carboxyl transferase domain P029_01820 PF03462 PCRF domain P029_01820 PF00472 RF-1 domain P029_01825 PF01926 50S ribosome-binding GTPase P029_01830 PF00696 Amino acid kinase family P029_01835 PF01218 Coproporphyrinogen III oxidase P029_01850 PF02403 Seryl-tRNA synthetase N-terminal domain P029_01850 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) P029_01855 PF02646 RmuC family P029_01880 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit P029_01880 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region P029_01880 PF10531 SLBB domain P029_01885 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 P029_01890 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L P029_01895 PF00361 Proton-conducting membrane transporter P029_01895 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus P029_01900 PF00361 Proton-conducting membrane transporter P029_01900 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus P029_01905 PF00361 Proton-conducting membrane transporter P029_01910 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain P029_01910 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase P029_01910 PF13288 DXP reductoisomerase C-terminal domain P029_01920 PF04551 GcpE protein P029_01925 PF00902 Sec-independent protein translocase protein (TatC) P029_01930 PF00873 AcrB/AcrD/AcrF family P029_01935 PF00575 S1 RNA binding domain P029_01935 PF08529 NusA N-terminal domain P029_01935 PF13184 NusA-like KH domain P029_01940 PF00009 Elongation factor Tu GTP binding domain P029_01940 PF04760 Translation initiation factor IF-2, N-terminal region P029_01940 PF11987 Translation-initiation factor 2 P029_01945 PF02033 Ribosome-binding factor A P029_01950 PF03764 Elongation factor G, domain IV P029_01950 PF14492 Elongation Factor G, domain II P029_01950 PF03144 Elongation factor Tu domain 2 P029_01950 PF00009 Elongation factor Tu GTP binding domain P029_01950 PF00679 Elongation factor G C-terminus P029_01955 PF03471 Transporter associated domain P029_01955 PF03741 Integral membrane protein TerC family P029_01960 PF00004 ATPase family associated with various cellular activities (AAA) P029_01960 PF17871 AAA lid domain P029_01960 PF07724 AAA domain (Cdc48 subfamily) P029_01960 PF10431 C-terminal, D2-small domain, of ClpB protein P029_01960 PF02861 Clp amino terminal domain, pathogenicity island component P029_02010 PF02934 GatB/GatE catalytic domain P029_02010 PF02637 GatB domain P029_02025 PF00436 Single-strand binding protein family P029_02030 PF03462 PCRF domain P029_02030 PF00472 RF-1 domain P029_02040 PF02934 GatB/GatE catalytic domain P029_02040 PF02637 GatB domain P029_02065 PF00308 Bacterial dnaA protein P029_02065 PF08299 Bacterial dnaA protein helix-turn-helix P029_02065 PF11638 DnaA N-terminal domain P029_02070 PF03462 PCRF domain P029_02070 PF00472 RF-1 domain P029_02075 PF01709 Transcriptional regulator P029_02085 PF06968 Biotin and Thiamin Synthesis associated domain P029_02085 PF04055 Radical SAM superfamily P029_02085 PF00202 Aminotransferase class-III P029_02115 PF03144 Elongation factor Tu domain 2 P029_02115 PF03764 Elongation factor G, domain IV P029_02115 PF00679 Elongation factor G C-terminus P029_02115 PF14492 Elongation Factor G, domain II P029_02115 PF00009 Elongation factor Tu GTP binding domain P029_02120 PF00923 Transaldolase/Fructose-6-phosphate aldolase P029_02130 PF02874 ATP synthase alpha/beta family, beta-barrel domain P029_02130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain P029_02160 PF01728 FtsJ-like methyltransferase P029_02165 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain P029_02165 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain P029_02170 PF01416 tRNA pseudouridine synthase P029_02180 PF01728 FtsJ-like methyltransferase P029_02195 PF00444 Ribosomal protein L36 P029_02210 PF01192 RNA polymerase Rpb6 P029_02220 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 P029_02225 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit P029_02230 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit P029_02235 PF01975 Survival protein SurE P029_02240 PF03100 CcmE P029_02250 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family P029_02255 PF01026 TatD related DNase P029_02260 PF01026 TatD related DNase P029_02265 PF09334 tRNA synthetases class I (M) P029_02265 PF13603 Leucyl-tRNA synthetase, Domain 2 P029_02265 PF00133 tRNA synthetases class I (I, L, M and V) P029_02265 PF08264 Anticodon-binding domain of tRNA P029_02270 PF08264 Anticodon-binding domain of tRNA P029_02270 PF00133 tRNA synthetases class I (I, L, M and V) P029_02270 PF13603 Leucyl-tRNA synthetase, Domain 2 P029_02270 PF09334 tRNA synthetases class I (M) P029_02290 PF17760 UvrA interaction domain P029_02290 PF17755 UvrA DNA-binding domain P029_02295 PF01029 NusB family P029_02300 PF00885 6,7-dimethyl-8-ribityllumazine synthase P029_02305 PF02096 60Kd inner membrane protein P029_02305 PF14849 YidC periplasmic domain P029_02310 PF14849 YidC periplasmic domain P029_02310 PF02096 60Kd inner membrane protein P029_02315 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal P029_02315 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region P029_02315 PF00384 Molybdopterin oxidoreductase P029_02320 PF01066 CDP-alcohol phosphatidyltransferase P029_02325 PF02666 Phosphatidylserine decarboxylase P029_02330 PF07992 Pyridine nucleotide-disulphide oxidoreductase P029_02340 PF01132 Elongation factor P (EF-P) OB domain P029_02340 PF08207 Elongation factor P (EF-P) KOW-like domain P029_02340 PF09285 Elongation factor P, C-terminal P029_02345 PF00459 Inositol monophosphatase family P029_02350 PF00849 RNA pseudouridylate synthase P029_02350 PF01479 S4 domain P029_02355 PF00072 Response regulator receiver domain P029_02355 PF00990 Diguanylate cyclase, GGDEF domain P029_02365 PF05088 Bacterial NAD-glutamate dehydrogenase P029_02370 PF06055 Exopolysaccharide synthesis, ExoD P029_02375 PF09190 DALR domain P029_02375 PF01406 tRNA synthetases class I (C) catalytic domain P029_02385 PF00268 Ribonucleotide reductase, small chain P029_02395 PF00750 tRNA synthetases class I (R) P029_02395 PF03485 Arginyl tRNA synthetase N terminal domain P029_02395 PF05746 DALR anticodon binding domain P029_02425 PF13662 Toprim domain P029_02425 PF08275 DNA primase catalytic core, N-terminal domain P029_02425 PF01807 CHC2 zinc finger P029_02430 PF05190 MutS family domain IV P029_02430 PF00488 MutS domain V P029_02430 PF01624 MutS domain I P029_02430 PF05188 MutS domain II P029_02430 PF05192 MutS domain III P029_02435 PF00288 GHMP kinases N terminal domain P029_02435 PF08544 GHMP kinases C terminal P029_02440 PF01207 Dihydrouridine synthase (Dus) P029_02445 PF00140 Sigma-70 factor, region 1.2 P029_02445 PF04539 Sigma-70 region 3 P029_02445 PF04545 Sigma-70, region 4 P029_02445 PF04546 Sigma-70, non-essential region P029_02445 PF04542 Sigma-70 region 2 P029_02445 PF03979 Sigma-70 factor, region 1.1 P029_02455 PF03091 CutA1 divalent ion tolerance protein P029_02460 PF00072 Response regulator receiver domain P029_02460 PF13188 PAS domain P029_02460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P029_02460 PF00512 His Kinase A (phospho-acceptor) domain P029_02460 PF08448 PAS fold P029_02480 PF01964 Radical SAM ThiC family P029_02480 PF13667 ThiC-associated domain P029_02490 PF01396 Topoisomerase DNA binding C4 zinc finger P029_02490 PF13368 Topoisomerase C-terminal repeat P029_02490 PF01751 Toprim domain P029_02490 PF01131 DNA topoisomerase P029_02515 PF03853 YjeF-related protein N-terminus P029_02515 PF01256 Carbohydrate kinase P029_02520 PF01964 Radical SAM ThiC family P029_02520 PF13667 ThiC-associated domain P029_02540 PF01921 tRNA synthetases class I (K) P029_02550 PF00814 Glycoprotease family P029_02590 PF00398 Ribosomal RNA adenine dimethylase P029_02600 PF00121 Triosephosphate isomerase P029_02605 PF16868 NMT1-like family P029_02610 PF00814 Glycoprotease family P029_02625 PF00056 lactate/malate dehydrogenase, NAD binding domain P029_02625 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain P029_02680 PF02502 Ribose/Galactose Isomerase P029_02700 PF01648 4'-phosphopantetheinyl transferase superfamily P029_02705 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) P029_02705 PF03129 Anticodon binding domain P029_02720 PF01467 Cytidylyltransferase-like P029_02725 PF01467 Cytidylyltransferase-like P029_02735 PF07992 Pyridine nucleotide-disulphide oxidoreductase P029_02740 PF00578 AhpC/TSA family P029_02740 PF10417 C-terminal domain of 1-Cys peroxiredoxin P029_02775 PF01619 Proline dehydrogenase P029_02775 PF14850 DNA-binding domain of Proline dehydrogenase P029_02775 PF00171 Aldehyde dehydrogenase family P029_02775 PF18327 Proline utilization A proline dehydrogenase N-terminal domain P029_02780 PF02129 X-Pro dipeptidyl-peptidase (S15 family) P029_02790 PF00266 Aminotransferase class-V P029_02795 PF01592 NifU-like N terminal domain P029_02800 PF01521 Iron-sulphur cluster biosynthesis P029_02805 PF07743 HSCB C-terminal oligomerisation domain P029_02805 PF00226 DnaJ domain P029_02810 PF00012 Hsp70 protein P029_02815 PF00111 2Fe-2S iron-sulfur cluster binding domain P029_02850 PF01795 MraW methylase family P029_02865 PF01926 50S ribosome-binding GTPase P029_02865 PF01018 GTP1/OBG P029_02870 PF00113 Enolase, C-terminal TIM barrel domain P029_02870 PF03952 Enolase, N-terminal domain P029_02875 PF00829 Ribosomal prokaryotic L21 protein P029_02880 PF01016 Ribosomal L27 protein P029_02890 PF03485 Arginyl tRNA synthetase N terminal domain P029_02890 PF05746 DALR anticodon binding domain P029_02890 PF00750 tRNA synthetases class I (R) P029_02910 PF01523 Putative modulator of DNA gyrase P029_02915 PF01227 GTP cyclohydrolase I P029_02920 PF00231 ATP synthase P029_02940 PF00146 NADH dehydrogenase P029_02945 PF00384 Molybdopterin oxidoreductase P029_02945 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region P029_02945 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal P029_02955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P029_02955 PF00986 DNA gyrase B subunit, carboxyl terminus P029_02955 PF00204 DNA gyrase B P029_02955 PF01751 Toprim domain P029_03000 PF00929 Exonuclease P029_03010 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit P029_03015 PF07992 Pyridine nucleotide-disulphide oxidoreductase P029_03020 PF00586 AIR synthase related protein, N-terminal domain P029_03020 PF02769 AIR synthase related protein, C-terminal domain P029_03025 PF11967 Recombination protein O N terminal P029_03025 PF02565 Recombination protein O C terminal P029_03060 PF01565 FAD binding domain P029_03060 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain P029_03065 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain P029_03065 PF03900 Porphobilinogen deaminase, C-terminal domain P029_03070 PF08245 Mur ligase middle domain P029_03070 PF02875 Mur ligase family, glutamate ligase domain P029_03075 PF01425 Amidase P029_03080 PF02441 Flavoprotein P029_03095 PF01078 Magnesium chelatase, subunit ChlI P029_03095 PF13335 Magnesium chelatase, subunit ChlI C-terminal P029_03115 PF04545 Sigma-70, region 4 P029_03115 PF04542 Sigma-70 region 2 P029_03115 PF00140 Sigma-70 factor, region 1.2 P029_03130 PF00679 Elongation factor G C-terminus P029_03130 PF00009 Elongation factor Tu GTP binding domain P029_03130 PF06421 GTP-binding protein LepA C-terminus P029_03130 PF03144 Elongation factor Tu domain 2 P029_03135 PF08241 Methyltransferase domain P029_03140 PF00575 S1 RNA binding domain P029_03140 PF00013 KH domain P029_03140 PF03725 3' exoribonuclease family, domain 2 P029_03140 PF01138 3' exoribonuclease family, domain 1 P029_03140 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain P029_03145 PF00312 Ribosomal protein S15 P029_03150 PF16198 tRNA pseudouridylate synthase B C-terminal domain P029_03150 PF01509 TruB family pseudouridylate synthase (N terminal domain) P029_03195 PF01121 Dephospho-CoA kinase P029_03200 PF03481 Putative GTP-binding controlling metal-binding P029_03200 PF01300 Telomere recombination P029_03205 PF09115 DNA polymerase III, delta subunit, C terminal P029_03215 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ P029_03220 PF01467 Cytidylyltransferase-like P029_03240 PF04452 RNA methyltransferase P029_03245 PF00578 AhpC/TSA family P029_03250 PF08264 Anticodon-binding domain of tRNA P029_03250 PF00133 tRNA synthetases class I (I, L, M and V) P029_03260 PF12838 4Fe-4S dicluster domain P029_03265 PF10502 Signal peptidase, peptidase S26 P029_03270 PF01521 Iron-sulphur cluster biosynthesis P029_03315 PF01227 GTP cyclohydrolase I P029_03450 PF08946 Osmosensory transporter coiled coil P029_03450 PF00083 Sugar (and other) transporter P029_03460 PF00490 Delta-aminolevulinic acid dehydratase P029_03465 PF00795 Carbon-nitrogen hydrolase P029_03465 PF02540 NAD synthase P029_03475 PF01624 MutS domain I P029_03475 PF05188 MutS domain II P029_03475 PF05192 MutS domain III P029_03475 PF05190 MutS family domain IV P029_03475 PF00488 MutS domain V P029_03485 PF01230 HIT domain P029_03495 PF16078 2-oxoglutarate dehydrogenase N-terminus P029_03495 PF00676 Dehydrogenase E1 component P029_03495 PF16870 2-oxoglutarate dehydrogenase C-terminal P029_03495 PF02779 Transketolase, pyrimidine binding domain P029_03505 PF10397 Adenylosuccinate lyase C-terminus P029_03505 PF00206 Lyase P029_03525 PF08279 HTH domain P029_03525 PF03099 Biotin/lipoate A/B protein ligase family P029_03525 PF02237 Biotin protein ligase C terminal domain P029_03540 PF00919 Uncharacterized protein family UPF0004 P029_03540 PF04055 Radical SAM superfamily P029_03555 PF01541 GIY-YIG catalytic domain P029_03555 PF08459 UvrC Helix-hairpin-helix N-terminal P029_03570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P029_03570 PF00183 Hsp90 protein P029_03590 PF00730 HhH-GPD superfamily base excision DNA repair protein P029_03590 PF00633 Helix-hairpin-helix motif P029_03590 PF10576 Iron-sulfur binding domain of endonuclease III P029_03595 PF03989 DNA gyrase C-terminal domain, beta-propeller P029_03595 PF00521 DNA gyrase/topoisomerase IV, subunit A P029_03610 PF00580 UvrD/REP helicase N-terminal domain P029_03610 PF13361 UvrD-like helicase C-terminal domain P029_03705 PF02600 Disulfide bond formation protein DsbB P029_03715 PF00471 Ribosomal protein L33 P029_03730 PF00550 Phosphopantetheine attachment site P029_03735 PF02801 Beta-ketoacyl synthase, C-terminal domain P029_03735 PF00109 Beta-ketoacyl synthase, N-terminal domain P029_03740 PF17782 DprA winged helix domain P029_03740 PF02481 DNA recombination-mediator protein A P029_03745 PF08676 MutL C terminal dimerisation domain P029_03745 PF01119 DNA mismatch repair protein, C-terminal domain P029_03750 PF01618 MotA/TolQ/ExbB proton channel family P029_03770 PF00989 PAS fold P029_03770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P029_03770 PF00512 His Kinase A (phospho-acceptor) domain P029_03775 PF00202 Aminotransferase class-III P029_03795 PF01580 FtsK/SpoIIIE family P029_03795 PF17854 FtsK alpha domain P029_03795 PF13491 4TM region of DNA translocase FtsK/SpoIIIE P029_03795 PF09397 Ftsk gamma domain P029_03805 PF01595 Cyclin M transmembrane N-terminal domain P029_03805 PF00571 CBS domain P029_03805 PF03471 Transporter associated domain P029_03810 PF02581 Thiamine monophosphate synthase P029_03815 PF03618 Kinase/pyrophosphorylase P029_03835 PF02911 Formyl transferase, C-terminal domain P029_03835 PF00551 Formyl transferase P029_03845 PF00004 ATPase family associated with various cellular activities (AAA) P029_03845 PF05362 Lon protease (S16) C-terminal proteolytic domain P029_03845 PF02190 ATP-dependent protease La (LON) substrate-binding domain P029_03850 PF06689 ClpX C4-type zinc finger P029_03850 PF07724 AAA domain (Cdc48 subfamily) P029_03850 PF10431 C-terminal, D2-small domain, of ClpB protein P029_03855 PF00574 Clp protease P029_03860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase P029_03860 PF05698 Bacterial trigger factor protein (TF) C-terminus P029_03860 PF05697 Bacterial trigger factor protein (TF) P029_03900 PF00155 Aminotransferase class I and II P029_03920 PF01297 Zinc-uptake complex component A periplasmic P029_03925 PF00005 ABC transporter P029_03930 PF03109 ABC1 family P029_03940 PF00005 ABC transporter P029_03940 PF08402 TOBE domain P029_03945 PF02416 mttA/Hcf106 family P029_03950 PF13662 Toprim domain P029_03950 PF02132 RecR protein P029_03955 PF01479 S4 domain P029_03955 PF00163 Ribosomal protein S4/S9 N-terminal domain P029_03980 PF02581 Thiamine monophosphate synthase P029_03980 PF08543 Phosphomethylpyrimidine kinase P029_03990 PF01594 AI-2E family transporter P029_04005 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit P029_04010 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit P029_04020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) P029_04025 PF17657 Bacterial DNA polymerase III alpha subunit finger domain P029_04025 PF07733 Bacterial DNA polymerase III alpha NTPase domain P029_04025 PF02811 PHP domain P029_04025 PF14579 Helix-hairpin-helix motif P029_04035 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region P029_04035 PF01243 Pyridoxamine 5'-phosphate oxidase P029_04040 PF02230 Phospholipase/Carboxylesterase P029_04045 PF01327 Polypeptide deformylase P029_04050 PF01180 Dihydroorotate dehydrogenase P029_04055 PF03309 Type III pantothenate kinase P029_04065 PF00155 Aminotransferase class I and II P029_04110 PF01351 Ribonuclease HII P029_04115 PF04983 RNA polymerase Rpb1, domain 3 P029_04115 PF00623 RNA polymerase Rpb1, domain 2 P029_04115 PF04997 RNA polymerase Rpb1, domain 1 P029_04115 PF04998 RNA polymerase Rpb1, domain 5 P029_04115 PF05000 RNA polymerase Rpb1, domain 4 P029_04120 PF00562 RNA polymerase Rpb2, domain 6 P029_04120 PF10385 RNA polymerase beta subunit external 1 domain P029_04120 PF04565 RNA polymerase Rpb2, domain 3 P029_04120 PF04563 RNA polymerase beta subunit P029_04120 PF04560 RNA polymerase Rpb2, domain 7 P029_04120 PF04561 RNA polymerase Rpb2, domain 2 P029_04125 PF00542 Ribosomal protein L7/L12 C-terminal domain P029_04130 PF00466 Ribosomal protein L10 P029_04135 PF00687 Ribosomal protein L1p/L10e family P029_04140 PF03946 Ribosomal protein L11, N-terminal domain P029_04140 PF00298 Ribosomal protein L11, RNA binding domain P029_04145 PF02357 Transcription termination factor nusG P029_04145 PF00467 KOW motif P029_04160 PF03143 Elongation factor Tu C-terminal domain P029_04160 PF03144 Elongation factor Tu domain 2 P029_04160 PF00009 Elongation factor Tu GTP binding domain P029_04165 PF03764 Elongation factor G, domain IV P029_04165 PF14492 Elongation Factor G, domain II P029_04165 PF00679 Elongation factor G C-terminus P029_04165 PF00009 Elongation factor Tu GTP binding domain P029_04165 PF03144 Elongation factor Tu domain 2 P029_04170 PF00177 Ribosomal protein S7p/S5e P029_04175 PF00164 Ribosomal protein S12/S23 P029_04180 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain P029_04180 PF12706 Beta-lactamase superfamily domain P029_04180 PF17770 Ribonuclease J C-terminal domain P029_04185 PF07676 WD40-like Beta Propeller Repeat P029_04185 PF04052 TolB amino-terminal domain P029_04200 PF00529 HlyD membrane-fusion protein of T1SS P029_04205 PF00528 Binding-protein-dependent transport system inner membrane component P029_04215 PF03060 Nitronate monooxygenase P029_04220 PF02630 SCO1/SenC P029_04230 PF01165 Ribosomal protein S21 P029_04235 PF00549 CoA-ligase P029_04235 PF08442 ATP-grasp domain P029_04240 PF02629 CoA binding domain P029_04240 PF00549 CoA-ligase P029_04250 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain P029_04250 PF01411 tRNA synthetases class II (A) P029_04255 PF00528 Binding-protein-dependent transport system inner membrane component P029_04295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain P029_04295 PF07992 Pyridine nucleotide-disulphide oxidoreductase P029_04300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain P029_04300 PF07498 Rho termination factor, N-terminal domain P029_04300 PF07497 Rho termination factor, RNA-binding domain P029_04305 PF00227 Proteasome subunit P029_04310 PF00004 ATPase family associated with various cellular activities (AAA) P029_04310 PF07724 AAA domain (Cdc48 subfamily) P029_04310 PF10431 C-terminal, D2-small domain, of ClpB protein P029_04315 PF01209 ubiE/COQ5 methyltransferase family P029_04325 PF08264 Anticodon-binding domain of tRNA P029_04325 PF09334 tRNA synthetases class I (M) P029_04340 PF00116 Cytochrome C oxidase subunit II, periplasmic domain P029_04340 PF02790 Cytochrome C oxidase subunit II, transmembrane domain P029_04345 PF00115 Cytochrome C and Quinol oxidase polypeptide I P029_04350 PF01040 UbiA prenyltransferase family P029_04355 PF13525 Outer membrane lipoprotein P029_04360 PF02844 Phosphoribosylglycinamide synthetase, N domain P029_04360 PF02843 Phosphoribosylglycinamide synthetase, C domain P029_04360 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain P029_04365 PF02699 Preprotein translocase subunit P029_04375 PF01171 PP-loop family P029_04385 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain P029_04385 PF01411 tRNA synthetases class II (A) P029_04395 PF02768 DNA polymerase III beta subunit, C-terminal domain P029_04395 PF02767 DNA polymerase III beta subunit, central domain P029_04395 PF00712 DNA polymerase III beta subunit, N-terminal domain P029_04405 PF00072 Response regulator receiver domain P029_04405 PF00486 Transcriptional regulatory protein, C terminal P029_04415 PF00719 Inorganic pyrophosphatase P029_04435 PF00380 Ribosomal protein S9/S16 P029_04440 PF00572 Ribosomal protein L13 P029_04450 PF04055 Radical SAM superfamily P029_04455 PF10609 NUBPL iron-transfer P-loop NTPase P029_04460 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase P029_04460 PF14572 Phosphoribosyl synthetase-associated domain P029_04465 PF02686 Glu-tRNAGln amidotransferase C subunit P029_04485 PF01617 Surface antigen P029_04495 PF00330 Aconitase family (aconitate hydratase) P029_04495 PF00694 Aconitase C-terminal domain P029_04510 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain P029_04510 PF02222 ATP-grasp domain P029_04515 PF04379 ApaG domain P029_04525 PF01617 Surface antigen P029_04635 PF01145 SPFH domain / Band 7 family P029_04640 PF01145 SPFH domain / Band 7 family P029_04645 PF13180 PDZ domain P029_04650 PF00035 Double-stranded RNA binding motif P029_04650 PF14622 Ribonuclease-III-like P029_04655 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 P029_04690 PF02104 SURF1 family P029_04700 PF00462 Glutaredoxin P029_04705 PF00899 ThiF family P029_04710 PF00156 Phosphoribosyl transferase domain P029_04725 PF02491 SHS2 domain inserted in FTSA P029_04730 PF10141 Single-strand DNA-specific exonuclease, C terminal domain P029_04730 PF01368 DHH family P029_04730 PF02272 DHHA1 domain P029_04730 PF17768 RecJ OB domain P029_04735 PF00180 Isocitrate/isopropylmalate dehydrogenase P029_04735 PF18324 Hypothetical protein TT1725 P029_04765 PF01252 Signal peptidase (SPase) II P029_04770 PF01687 Riboflavin kinase P029_04770 PF06574 FAD synthetase P029_04775 PF00462 Glutaredoxin P029_04790 PF02810 SEC-C motif P029_04790 PF07517 SecA DEAD-like domain P029_04790 PF07516 SecA Wing and Scaffold domain P029_04790 PF01043 SecA preprotein cross-linking domain P029_04795 PF17862 AAA+ lid domain P029_04795 PF06480 FtsH Extracellular P029_04795 PF01434 Peptidase family M41 P029_04795 PF00004 ATPase family associated with various cellular activities (AAA) P029_04805 PF02386 Cation transport protein P029_04810 PF02491 SHS2 domain inserted in FTSA P029_04840 PF00137 ATP synthase subunit C P029_04845 PF00119 ATP synthase A chain P029_04850 PF13685 Iron-containing alcohol dehydrogenase P029_04870 PF00132 Bacterial transferase hexapeptide (six repeats) P029_04875 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) P029_04875 PF00364 Biotin-requiring enzyme P029_04875 PF02817 e3 binding domain P029_04880 PF00557 Metallopeptidase family M24 P029_04885 PF13847 Methyltransferase domain P029_04885 PF17827 PrmC N-terminal domain P029_04900 PF01578 Cytochrome C assembly protein P029_04900 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal P029_04905 PF00115 Cytochrome C and Quinol oxidase polypeptide I P029_04910 PF01066 CDP-alcohol phosphatidyltransferase P029_04915 PF02142 MGS-like domain P029_04915 PF01808 AICARFT/IMPCHase bienzyme P029_04920 PF07977 FabA-like domain P029_04930 PF07244 Surface antigen variable number repeat P029_04930 PF01103 Surface antigen P029_04935 PF17820 PDZ domain P029_04935 PF02163 Peptidase family M50 P029_04950 PF00768 D-alanyl-D-alanine carboxypeptidase P029_04950 PF07943 Penicillin-binding protein 5, C-terminal domain P029_04965 PF01743 Poly A polymerase head domain P029_04965 PF13735 tRNA nucleotidyltransferase domain 2 putative P029_04965 PF12627 Probable RNA and SrmB- binding site of polymerase A P029_04970 PF00334 Nucleoside diphosphate kinase P029_04975 PF01381 Helix-turn-helix P029_05000 PF00154 recA bacterial DNA recombination protein P029_05005 PF00133 tRNA synthetases class I (I, L, M and V) P029_05005 PF08264 Anticodon-binding domain of tRNA P029_05020 PF01791 DeoC/LacD family aldolase P029_05025 PF00364 Biotin-requiring enzyme P029_05025 PF02817 e3 binding domain P029_05025 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) P029_05040 PF00155 Aminotransferase class I and II P029_05045 PF00579 tRNA synthetases class I (W and Y) P029_05055 PF00120 Glutamine synthetase, catalytic domain P029_05055 PF03951 Glutamine synthetase, beta-Grasp domain P029_05060 PF00348 Polyprenyl synthetase P029_05085 PF12631 MnmE helical domain P029_05085 PF10396 GTP-binding protein TrmE N-terminus P029_05085 PF01926 50S ribosome-binding GTPase P029_05090 PF02130 Uncharacterized protein family UPF0054 P029_05100 PF12327 FtsZ family, C-terminal domain P029_05100 PF00091 Tubulin/FtsZ family, GTPase domain P029_05115 PF04127 DNA / pantothenate metabolism flavoprotein P029_05115 PF02441 Flavoprotein P029_05120 PF17191 RecG wedge domain P029_05120 PF00271 Helicase conserved C-terminal domain P029_05120 PF00270 DEAD/DEAH box helicase P029_05130 PF00156 Phosphoribosyl transferase domain P029_05130 PF13537 Glutamine amidotransferase domain P029_05135 PF01195 Peptidyl-tRNA hydrolase P029_05140 PF01195 Peptidyl-tRNA hydrolase P029_05145 PF14693 Ribosomal protein TL5, C-terminal domain P029_05145 PF01386 Ribosomal L25p family P029_05150 PF00156 Phosphoribosyl transferase domain P029_05155 PF00999 Sodium/hydrogen exchanger family P029_05155 PF02254 TrkA-N domain P029_05170 PF02780 Transketolase, C-terminal domain P029_05170 PF02779 Transketolase, pyrimidine binding domain P029_05180 PF01523 Putative modulator of DNA gyrase P029_05190 PF06071 Protein of unknown function (DUF933) P029_05190 PF01926 50S ribosome-binding GTPase P029_05205 PF01617 Surface antigen P029_05230 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal P029_05230 PF01578 Cytochrome C assembly protein P029_05250 PF00285 Citrate synthase, C-terminal domain P029_05255 PF00958 GMP synthase C terminal domain P029_05255 PF00117 Glutamine amidotransferase class-I P029_05270 PF02542 YgbB family P029_05275 PF02542 YgbB family P029_05275 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase P029_05285 PF00731 AIR carboxylase P029_05295 PF00216 Bacterial DNA-binding protein P029_05300 PF13411 MerR HTH family regulatory protein P029_05325 PF02881 SRP54-type protein, helical bundle domain P029_05325 PF00448 SRP54-type protein, GTPase domain P029_05355 PF01782 RimM N-terminal domain P029_05360 PF01746 tRNA (Guanine-1)-methyltransferase P029_05365 PF01245 Ribosomal protein L19 P029_05370 PF02464 Competence-damaged protein P029_05370 PF00994 Probable molybdopterin binding domain P029_05370 PF18146 Damage-inducible protein CinA KH domain P029_05375 PF03129 Anticodon binding domain P029_05375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) P029_05375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain P029_05380 PF05198 Translation initiation factor IF-3, N-terminal domain P029_05380 PF00707 Translation initiation factor IF-3, C-terminal domain P029_05415 PF00925 GTP cyclohydrolase II P029_05425 PF00162 Phosphoglycerate kinase P029_05430 PF02601 Exonuclease VII, large subunit P029_05430 PF13742 OB-fold nucleic acid binding domain P029_05450 PF02355 Protein export membrane protein P029_05450 PF07549 SecD/SecF GG Motif P029_05455 PF02021 Uncharacterised protein family UPF0102 P029_05470 PF01668 SmpB protein P029_05475 PF00925 GTP cyclohydrolase II P029_05475 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase P029_05480 PF01272 Transcription elongation factor, GreA/GreB, C-term P029_05480 PF03449 Transcription elongation factor, N-terminal P029_05485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain P029_05485 PF00306 ATP synthase alpha/beta chain, C terminal domain P029_05485 PF02874 ATP synthase alpha/beta family, beta-barrel domain P029_05490 PF00213 ATP synthase delta (OSCP) subunit P029_05510 PF02687 FtsX-like permease family P029_05510 PF12704 MacB-like periplasmic core domain P029_05520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain P029_05520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain P029_05530 PF12169 DNA polymerase III subunits gamma and tau domain III P029_05540 PF02774 Semialdehyde dehydrogenase, dimerisation domain P029_05540 PF01118 Semialdehyde dehydrogenase, NAD binding domain P029_05545 PF01027 Inhibitor of apoptosis-promoting Bax1 P029_05550 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE P029_05565 PF00154 recA bacterial DNA recombination protein P029_05600 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase P029_05615 PF02355 Protein export membrane protein P029_05620 PF17757 UvrB interaction domain P029_05620 PF12344 Ultra-violet resistance protein B P029_05620 PF00271 Helicase conserved C-terminal domain P029_05620 PF02151 UvrB/uvrC motif P029_05620 PF04851 Type III restriction enzyme, res subunit P029_05645 PF01327 Polypeptide deformylase P029_05650 PF01553 Acyltransferase P029_05655 PF01649 Ribosomal protein S20 P029_05670 PF01790 Prolipoprotein diacylglyceryl transferase P029_05675 PF03023 Lipid II flippase MurJ P029_05750 PF01545 Cation efflux family P029_05765 PF01258 Prokaryotic dksA/traR C4-type zinc finger P029_05780 PF02534 Type IV secretory system Conjugative DNA transfer P029_05785 PF00437 Type II/IV secretion system protein P029_05790 PF03743 Bacterial conjugation TrbI-like protein P029_05810 PF02463 RecF/RecN/SMC N terminal domain