P029_00010	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
P029_00010	PWY-5723	Rubisco shunt
P029_00035	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
P029_00035	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
P029_00075	PWY-5316	nicotine biosynthesis
P029_00075	PWY-5381	pyridine nucleotide cycling (plants)
P029_00075	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
P029_00075	PWY-7342	superpathway of nicotine biosynthesis
P029_00095	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
P029_00095	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
P029_00095	PWY-7766	P029_00095
P029_00120	PWY-5316	nicotine biosynthesis
P029_00120	PWY-7342	superpathway of nicotine biosynthesis
P029_00160	PWY-7991	P029_00160
P029_00165	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
P029_00165	PWY-7177	UTP and CTP dephosphorylation II
P029_00165	PWY-7185	UTP and CTP dephosphorylation I
P029_00185	PWY-1281	sulfoacetaldehyde degradation I
P029_00185	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
P029_00185	PWY-5482	pyruvate fermentation to acetate II
P029_00185	PWY-5485	pyruvate fermentation to acetate IV
P029_00185	PWY-5497	purine nucleobases degradation II (anaerobic)
P029_00185	PWY-6637	sulfolactate degradation II
P029_00185	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
P029_00260	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
P029_00260	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
P029_00285	PWY-7980	P029_00285
P029_00295	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
P029_00295	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
P029_00320	PWY-6891	thiazole biosynthesis II (Bacillus)
P029_00320	PWY-6892	thiazole biosynthesis I (E. coli)
P029_00330	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
P029_00415	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
P029_00415	PWY-6596	adenosine nucleotides degradation I
P029_00415	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
P029_00420	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
P029_00420	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
P029_00420	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
P029_00435	PWY-4381	fatty acid biosynthesis initiation I
P029_00435	PWY-6799	fatty acid biosynthesis (plant mitochondria)
P029_00435	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
P029_00440	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
P029_00440	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
P029_00440	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
P029_00440	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
P029_00440	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
P029_00440	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
P029_00470	PWY-723	alkylnitronates degradation
P029_00485	PWY-6167	flavin biosynthesis II (archaea)
P029_00485	PWY-6168	flavin biosynthesis III (fungi)
P029_00485	PWY-7980	P029_00485
P029_00545	PWY-6123	inosine-5'-phosphate biosynthesis I
P029_00545	PWY-6124	inosine-5'-phosphate biosynthesis II
P029_00545	PWY-7234	inosine-5'-phosphate biosynthesis III
P029_00660	PWY-1622	formaldehyde assimilation I (serine pathway)
P029_00660	PWY-181	photorespiration
P029_00660	PWY-2161	folate polyglutamylation
P029_00660	PWY-2201	folate transformations I
P029_00660	PWY-3661	glycine betaine degradation I
P029_00660	PWY-3661-1	glycine betaine degradation II (mammalian)
P029_00660	PWY-3841	folate transformations II
P029_00660	PWY-5497	purine nucleobases degradation II (anaerobic)
P029_00680	PWY-3781	aerobic respiration I (cytochrome c)
P029_00680	PWY-4302	aerobic respiration III (alternative oxidase pathway)
P029_00680	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
P029_00680	PWY-5690	TCA cycle II (plants and fungi)
P029_00680	PWY-6728	methylaspartate cycle
P029_00680	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
P029_00680	PWY-7254	TCA cycle VII (acetate-producers)
P029_00680	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
P029_00685	PWY-3781	aerobic respiration I (cytochrome c)
P029_00685	PWY-4302	aerobic respiration III (alternative oxidase pathway)
P029_00685	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
P029_00685	PWY-5690	TCA cycle II (plants and fungi)
P029_00685	PWY-6728	methylaspartate cycle
P029_00685	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
P029_00685	PWY-7254	TCA cycle VII (acetate-producers)
P029_00685	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
P029_00690	PWY-3781	aerobic respiration I (cytochrome c)
P029_00690	PWY-4302	aerobic respiration III (alternative oxidase pathway)
P029_00690	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
P029_00690	PWY-5690	TCA cycle II (plants and fungi)
P029_00690	PWY-6728	methylaspartate cycle
P029_00690	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
P029_00690	PWY-7254	TCA cycle VII (acetate-producers)
P029_00690	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
P029_00695	PWY-3781	aerobic respiration I (cytochrome c)
P029_00695	PWY-4302	aerobic respiration III (alternative oxidase pathway)
P029_00695	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
P029_00695	PWY-5690	TCA cycle II (plants and fungi)
P029_00695	PWY-6728	methylaspartate cycle
P029_00695	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
P029_00695	PWY-7254	TCA cycle VII (acetate-producers)
P029_00695	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
P029_00700	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
P029_00735	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
P029_00755	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
P029_00755	PWY-2201	folate transformations I
P029_00755	PWY-3841	folate transformations II
P029_00755	PWY-5030	L-histidine degradation III
P029_00755	PWY-5497	purine nucleobases degradation II (anaerobic)
P029_00755	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
P029_00755	PWY-7909	P029_00755
P029_00790	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
P029_00790	PWY-6549	L-glutamine biosynthesis III
P029_00790	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
P029_00790	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
P029_00840	PWY-5667	CDP-diacylglycerol biosynthesis I
P029_00840	PWY-5981	CDP-diacylglycerol biosynthesis III
P029_00840	PWY-7902	P029_00840
P029_00860	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
P029_00860	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
P029_00860	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
P029_00890	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
P029_00890	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
P029_00890	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
P029_00900	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
P029_00900	PWY-6148	tetrahydromethanopterin biosynthesis
P029_00900	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
P029_00900	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
P029_00900	PWY-7852	P029_00900
P029_00900	PWY-7853	P029_00900
P029_00905	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
P029_00905	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
P029_00905	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
P029_00930	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
P029_00950	PWY-5484	glycolysis II (from fructose 6-phosphate)
P029_00960	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
P029_00960	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
P029_00960	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
P029_00985	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
P029_00985	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
P029_01040	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
P029_01040	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
P029_01045	PWY-5686	UMP biosynthesis
P029_01045	PWY-7790	P029_01045
P029_01045	PWY-7791	P029_01045
P029_01055	PWY-5392	reductive TCA cycle II
P029_01055	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
P029_01055	PWY-5690	TCA cycle II (plants and fungi)
P029_01055	PWY-5913	TCA cycle VI (obligate autotrophs)
P029_01055	PWY-6728	methylaspartate cycle
P029_01055	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
P029_01055	PWY-7254	TCA cycle VII (acetate-producers)
P029_01055	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
P029_01065	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
P029_01065	PWY-5686	UMP biosynthesis
P029_01065	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
P029_01065	PWY-7790	P029_01065
P029_01065	PWY-7791	P029_01065
P029_01075	PWY-6614	tetrahydrofolate biosynthesis
P029_01140	PWY-6891	thiazole biosynthesis II (Bacillus)
P029_01140	PWY-6892	thiazole biosynthesis I (E. coli)
P029_01140	PWY-7560	methylerythritol phosphate pathway II
P029_01165	PWY-7205	CMP phosphorylation
P029_01295	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
P029_01355	PWY-6700	queuosine biosynthesis
P029_01370	PWY-4381	fatty acid biosynthesis initiation I
P029_01430	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
P029_01430	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
P029_01430	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
P029_01430	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
P029_01430	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
P029_01430	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
P029_01430	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
P029_01430	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
P029_01440	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
P029_01460	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
P029_01460	PWY-5723	Rubisco shunt
P029_01460	PWY-6891	thiazole biosynthesis II (Bacillus)
P029_01460	PWY-6892	thiazole biosynthesis I (E. coli)
P029_01460	PWY-6901	superpathway of glucose and xylose degradation
P029_01460	PWY-7560	methylerythritol phosphate pathway II
P029_01540	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
P029_01540	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
P029_01585	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
P029_01585	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
P029_01600	PWY-6854	ethylene biosynthesis III (microbes)
P029_01650	PWY-7560	methylerythritol phosphate pathway II
P029_01655	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
P029_01655	PWY-5686	UMP biosynthesis
P029_01655	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
P029_01655	PWY-7790	P029_01655
P029_01655	PWY-7791	P029_01655
P029_01690	PWY-1042	glycolysis IV (plant cytosol)
P029_01690	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
P029_01690	PWY-5484	glycolysis II (from fructose 6-phosphate)
P029_01690	PWY-5723	Rubisco shunt
P029_01690	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
P029_01690	PWY-6886	1-butanol autotrophic biosynthesis
P029_01690	PWY-6901	superpathway of glucose and xylose degradation
P029_01690	PWY-7003	glycerol degradation to butanol
P029_01690	PWY-7124	ethylene biosynthesis V (engineered)
P029_01690	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
P029_01710	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
P029_01710	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
P029_01750	PWY-3781	aerobic respiration I (cytochrome c)
P029_01750	PWY-6692	Fe(II) oxidation
P029_01750	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
P029_01750	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
P029_01785	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
P029_01810	PWY-4381	fatty acid biosynthesis initiation I
P029_01810	PWY-5743	3-hydroxypropanoate cycle
P029_01810	PWY-5744	glyoxylate assimilation
P029_01810	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
P029_01810	PWY-6722	candicidin biosynthesis
P029_01830	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
P029_01830	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
P029_01835	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
P029_01850	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
P029_01865	PWY-2781	<i>cis</i>-zeatin biosynthesis
P029_01910	PWY-7560	methylerythritol phosphate pathway II
P029_02060	PWY-5971	palmitate biosynthesis II (bacteria and plants)
P029_02060	PWY-5973	<i>cis</i>-vaccenate biosynthesis
P029_02060	PWY-5989	stearate biosynthesis II (bacteria and plants)
P029_02060	PWY-6113	superpathway of mycolate biosynthesis
P029_02060	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
P029_02060	PWY-6519	8-amino-7-oxononanoate biosynthesis I
P029_02060	PWY-7663	gondoate biosynthesis (anaerobic)
P029_02060	PWY-7664	oleate biosynthesis IV (anaerobic)
P029_02060	PWY-7858	P029_02060
P029_02060	PWYG-321	mycolate biosynthesis
P029_02120	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
P029_02120	PWY-5723	Rubisco shunt
P029_02130	PWY-7980	P029_02130
P029_02165	PWY-5686	UMP biosynthesis
P029_02165	PWY-7790	P029_02165
P029_02165	PWY-7791	P029_02165
P029_02235	PWY-5381	pyridine nucleotide cycling (plants)
P029_02235	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
P029_02235	PWY-6596	adenosine nucleotides degradation I
P029_02235	PWY-6606	guanosine nucleotides degradation II
P029_02235	PWY-6607	guanosine nucleotides degradation I
P029_02235	PWY-6608	guanosine nucleotides degradation III
P029_02235	PWY-7185	UTP and CTP dephosphorylation I
P029_02235	PWY-7821	P029_02235
P029_02250	PWY-5686	UMP biosynthesis
P029_02250	PWY-7790	P029_02250
P029_02250	PWY-7791	P029_02250
P029_02300	PWY-6167	flavin biosynthesis II (archaea)
P029_02300	PWY-6168	flavin biosynthesis III (fungi)
P029_02320	PWY-5669	phosphatidylethanolamine biosynthesis I
P029_02325	PWY-5669	phosphatidylethanolamine biosynthesis I
P029_02365	PWY-5022	4-aminobutanoate degradation V
P029_02365	PWY-6728	methylaspartate cycle
P029_02365	PWY-7126	ethylene biosynthesis IV
P029_02385	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
P029_02385	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
P029_02385	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
P029_02385	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
P029_02385	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
P029_02385	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
P029_02385	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
P029_02385	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
P029_02435	PWY-7560	methylerythritol phosphate pathway II
P029_02480	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
P029_02515	PWY-6938	NADH repair
P029_02520	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
P029_02535	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
P029_02535	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
P029_02535	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
P029_02535	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
P029_02535	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
P029_02535	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
P029_02535	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
P029_02535	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
P029_02535	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
P029_02535	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
P029_02540	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
P029_02600	PWY-1042	glycolysis IV (plant cytosol)
P029_02600	PWY-5484	glycolysis II (from fructose 6-phosphate)
P029_02600	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
P029_02600	PWY-7003	glycerol degradation to butanol
P029_02620	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
P029_02620	PWY-6148	tetrahydromethanopterin biosynthesis
P029_02620	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
P029_02620	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
P029_02625	PWY-1622	formaldehyde assimilation I (serine pathway)
P029_02625	PWY-5392	reductive TCA cycle II
P029_02625	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
P029_02625	PWY-5690	TCA cycle II (plants and fungi)
P029_02625	PWY-5913	TCA cycle VI (obligate autotrophs)
P029_02625	PWY-6728	methylaspartate cycle
P029_02625	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
P029_02625	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
P029_02625	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
P029_02700	PWY-6012	acyl carrier protein metabolism I
P029_02700	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
P029_02700	PWY-6289	petrobactin biosynthesis
P029_02720	PWY-7851	P029_02720
P029_02770	PWY-5367	petroselinate biosynthesis
P029_02770	PWY-5971	palmitate biosynthesis II (bacteria and plants)
P029_02770	PWY-5973	<i>cis</i>-vaccenate biosynthesis
P029_02770	PWY-5989	stearate biosynthesis II (bacteria and plants)
P029_02770	PWY-5994	palmitate biosynthesis I (animals and fungi)
P029_02770	PWY-6113	superpathway of mycolate biosynthesis
P029_02770	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
P029_02770	PWY-6519	8-amino-7-oxononanoate biosynthesis I
P029_02770	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
P029_02770	PWY-7663	gondoate biosynthesis (anaerobic)
P029_02770	PWY-7664	oleate biosynthesis IV (anaerobic)
P029_02770	PWY-7858	P029_02770
P029_02770	PWYG-321	mycolate biosynthesis
P029_02775	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
P029_02775	PWY-6853	ethylene biosynthesis II (microbes)
P029_02775	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
P029_02790	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
P029_02870	PWY-1042	glycolysis IV (plant cytosol)
P029_02870	PWY-1622	formaldehyde assimilation I (serine pathway)
P029_02870	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
P029_02870	PWY-5484	glycolysis II (from fructose 6-phosphate)
P029_02870	PWY-5723	Rubisco shunt
P029_02870	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
P029_02870	PWY-6886	1-butanol autotrophic biosynthesis
P029_02870	PWY-6901	superpathway of glucose and xylose degradation
P029_02870	PWY-7003	glycerol degradation to butanol
P029_02870	PWY-7124	ethylene biosynthesis V (engineered)
P029_02870	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
P029_02915	PWY-5663	tetrahydrobiopterin biosynthesis I
P029_02915	PWY-5664	tetrahydrobiopterin biosynthesis II
P029_02915	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
P029_02915	PWY-6703	preQ<sub>0</sub> biosynthesis
P029_02915	PWY-6983	tetrahydrobiopterin biosynthesis III
P029_02915	PWY-7442	drosopterin and aurodrosopterin biosynthesis
P029_02915	PWY-7852	P029_02915
P029_03015	PWY-101	photosynthesis light reactions
P029_03020	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
P029_03020	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
P029_03020	PWY-6896	thiamin salvage I
P029_03020	PWY-6897	thiamin salvage II
P029_03060	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
P029_03060	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
P029_03060	PWY-7953	P029_03060
P029_03065	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
P029_03065	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
P029_03070	PWY-2161	folate polyglutamylation
P029_03075	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
P029_03195	PWY-7851	P029_03195
P029_03315	PWY-5663	tetrahydrobiopterin biosynthesis I
P029_03315	PWY-5664	tetrahydrobiopterin biosynthesis II
P029_03315	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
P029_03315	PWY-6703	preQ<sub>0</sub> biosynthesis
P029_03315	PWY-6983	tetrahydrobiopterin biosynthesis III
P029_03315	PWY-7442	drosopterin and aurodrosopterin biosynthesis
P029_03315	PWY-7852	P029_03315
P029_03460	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
P029_03460	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
P029_03465	PWY-5381	pyridine nucleotide cycling (plants)
P029_03465	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
P029_03465	PWY-7761	P029_03465
P029_03495	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
P029_03505	PWY-6123	inosine-5'-phosphate biosynthesis I
P029_03505	PWY-6124	inosine-5'-phosphate biosynthesis II
P029_03505	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
P029_03505	PWY-7234	inosine-5'-phosphate biosynthesis III
P029_03525	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
P029_03525	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
P029_03635	PWY-7887	P029_03635
P029_03635	PWY-7892	P029_03635
P029_03810	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
P029_03810	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
P029_03810	PWY-6897	thiamin salvage II
P029_03810	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
P029_03810	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
P029_03810	PWY-7356	thiamin salvage IV (yeast)
P029_03810	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
P029_03875	PWY-5269	cardiolipin biosynthesis II
P029_03875	PWY-5668	cardiolipin biosynthesis I
P029_03875	PWY-7817	P029_03875
P029_03980	PWY-6910	hydroxymethylpyrimidine salvage
P029_03980	PWY-7356	thiamin salvage IV (yeast)
P029_03980	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
P029_04035	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
P029_04035	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
P029_04050	PWY-5686	UMP biosynthesis
P029_04055	PWY-3961	phosphopantothenate biosynthesis II
P029_04215	PWY-723	alkylnitronates degradation
P029_04235	PWY-5392	reductive TCA cycle II
P029_04235	PWY-5537	pyruvate fermentation to acetate V
P029_04235	PWY-5538	pyruvate fermentation to acetate VI
P029_04235	PWY-5690	TCA cycle II (plants and fungi)
P029_04235	PWY-5913	TCA cycle VI (obligate autotrophs)
P029_04235	PWY-6728	methylaspartate cycle
P029_04235	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
P029_04235	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
P029_04240	PWY-5392	reductive TCA cycle II
P029_04240	PWY-5537	pyruvate fermentation to acetate V
P029_04240	PWY-5538	pyruvate fermentation to acetate VI
P029_04240	PWY-5690	TCA cycle II (plants and fungi)
P029_04240	PWY-5913	TCA cycle VI (obligate autotrophs)
P029_04240	PWY-6728	methylaspartate cycle
P029_04240	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
P029_04240	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
P029_04260	PWY-381	nitrate reduction II (assimilatory)
P029_04260	PWY-5675	nitrate reduction V (assimilatory)
P029_04260	PWY-6549	L-glutamine biosynthesis III
P029_04260	PWY-6963	ammonia assimilation cycle I
P029_04260	PWY-6964	ammonia assimilation cycle II
P029_04295	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
P029_04295	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
P029_04300	PWY-7980	P029_04300
P029_04315	PWY-5839	menaquinol-7 biosynthesis
P029_04315	PWY-5844	menaquinol-9 biosynthesis
P029_04315	PWY-5849	menaquinol-6 biosynthesis
P029_04315	PWY-5890	menaquinol-10 biosynthesis
P029_04315	PWY-5891	menaquinol-11 biosynthesis
P029_04315	PWY-5892	menaquinol-12 biosynthesis
P029_04315	PWY-5895	menaquinol-13 biosynthesis
P029_04345	PWY-3781	aerobic respiration I (cytochrome c)
P029_04345	PWY-4521	arsenite oxidation I (respiratory)
P029_04345	PWY-6692	Fe(II) oxidation
P029_04345	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
P029_04360	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
P029_04360	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
P029_04360	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
P029_04415	PWY-7805	P029_04415
P029_04415	PWY-7807	P029_04415
P029_04710	PWY-5686	UMP biosynthesis
P029_04710	PWY-7790	P029_04710
P029_04710	PWY-7791	P029_04710
P029_04730	PWY-7805	P029_04730
P029_04730	PWY-7807	P029_04730
P029_04735	PWY-5913	TCA cycle VI (obligate autotrophs)
P029_04735	PWY-6549	L-glutamine biosynthesis III
P029_04735	PWY-6728	methylaspartate cycle
P029_04735	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
P029_04735	PWY-7124	ethylene biosynthesis V (engineered)
P029_04735	PWY-7254	TCA cycle VII (acetate-producers)
P029_04735	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
P029_04765	PWY-7884	P029_04765
P029_04770	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
P029_04770	PWY-6167	flavin biosynthesis II (archaea)
P029_04770	PWY-6168	flavin biosynthesis III (fungi)
P029_04770	PWY-7863	P029_04770
P029_04850	PWY-6349	CDP-archaeol biosynthesis
P029_04875	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
P029_04880	PWY-7799	P029_04880
P029_04880	PWY-7800	P029_04880
P029_04905	PWY-3781	aerobic respiration I (cytochrome c)
P029_04905	PWY-4521	arsenite oxidation I (respiratory)
P029_04905	PWY-6692	Fe(II) oxidation
P029_04905	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
P029_04910	PWY-5269	cardiolipin biosynthesis II
P029_04910	PWY-5668	cardiolipin biosynthesis I
P029_04910	PWY-7817	P029_04910
P029_04915	PWY-6123	inosine-5'-phosphate biosynthesis I
P029_04915	PWY-6124	inosine-5'-phosphate biosynthesis II
P029_04915	PWY-7234	inosine-5'-phosphate biosynthesis III
P029_04920	PWY-5971	palmitate biosynthesis II (bacteria and plants)
P029_04920	PWY-5973	<i>cis</i>-vaccenate biosynthesis
P029_04920	PWY-5989	stearate biosynthesis II (bacteria and plants)
P029_04920	PWY-5994	palmitate biosynthesis I (animals and fungi)
P029_04920	PWY-6113	superpathway of mycolate biosynthesis
P029_04920	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
P029_04920	PWY-6519	8-amino-7-oxononanoate biosynthesis I
P029_04920	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
P029_04920	PWY-7663	gondoate biosynthesis (anaerobic)
P029_04920	PWY-7664	oleate biosynthesis IV (anaerobic)
P029_04920	PWY-7858	P029_04920
P029_04920	PWYG-321	mycolate biosynthesis
P029_04950	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
P029_04950	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
P029_04970	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
P029_04970	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
P029_04970	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
P029_04970	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
P029_04970	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
P029_04970	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
P029_04970	PWY-7205	CMP phosphorylation
P029_04970	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
P029_04970	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
P029_04970	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
P029_04970	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
P029_04970	PWY-7224	purine deoxyribonucleosides salvage
P029_04970	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
P029_04970	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
P029_05040	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
P029_05040	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
P029_05055	PWY-381	nitrate reduction II (assimilatory)
P029_05055	PWY-5675	nitrate reduction V (assimilatory)
P029_05055	PWY-6549	L-glutamine biosynthesis III
P029_05055	PWY-6963	ammonia assimilation cycle I
P029_05055	PWY-6964	ammonia assimilation cycle II
P029_05130	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
P029_05130	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
P029_05130	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
P029_05130	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
P029_05135	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
P029_05140	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
P029_05255	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
P029_05270	PWY-7560	methylerythritol phosphate pathway II
P029_05275	PWY-7560	methylerythritol phosphate pathway II
P029_05285	PWY-6123	inosine-5'-phosphate biosynthesis I
P029_05285	PWY-7234	inosine-5'-phosphate biosynthesis III
P029_05330	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
P029_05360	PWY-6829	tRNA methylation (yeast)
P029_05360	PWY-7285	methylwyosine biosynthesis
P029_05360	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
P029_05415	PWY-6168	flavin biosynthesis III (fungi)
P029_05415	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
P029_05415	PWY-7991	P029_05415
P029_05425	PWY-1042	glycolysis IV (plant cytosol)
P029_05425	PWY-5484	glycolysis II (from fructose 6-phosphate)
P029_05425	PWY-6886	1-butanol autotrophic biosynthesis
P029_05425	PWY-6901	superpathway of glucose and xylose degradation
P029_05425	PWY-7003	glycerol degradation to butanol
P029_05475	PWY-6167	flavin biosynthesis II (archaea)
P029_05475	PWY-6168	flavin biosynthesis III (fungi)
P029_05485	PWY-7980	P029_05485
P029_05540	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
P029_05540	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
P029_05600	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
P029_05600	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
P029_05600	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
P029_05600	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
P029_05600	PWY-6978	plastoquinol-9 biosynthesis II
