locus-tag class description CB4_00001 PF00158 Sigma-54 interaction domain CB4_00001 PF13426 PAS domain CB4_00001 PF02954 Bacterial regulatory protein, Fis family CB4_00002 PF12544 Lysine-2,3-aminomutase CB4_00003 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CB4_00004 PF07451 Stage V sporulation protein AD (SpoVAD) CB4_00005 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CB4_00007 PF04239 Protein of unknown function (DUF421) CB4_00008 PF10431 C-terminal, D2-small domain, of ClpB protein CB4_00008 PF02861 Clp amino terminal domain, pathogenicity island component CB4_00008 PF17871 AAA lid domain CB4_00008 PF07724 AAA domain (Cdc48 subfamily) CB4_00008 PF00004 ATPase family associated with various cellular activities (AAA) CB4_00011 PF12802 MarR family CB4_00012 PF07690 Major Facilitator Superfamily CB4_00014 PF13538 UvrD-like helicase C-terminal domain CB4_00017 PF13739 Deacetylase PdaC CB4_00017 PF01522 Polysaccharide deacetylase CB4_00017 PF11738 Protein of unknown function (DUF3298) CB4_00018 PF01520 N-acetylmuramoyl-L-alanine amidase CB4_00020 PF03323 Bacillus/Clostridium GerA spore germination protein CB4_00021 PF03845 Spore germination protein CB4_00032 PF00512 His Kinase A (phospho-acceptor) domain CB4_00032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00032 PF18719 ArlS sensor domain CB4_00033 PF00486 Transcriptional regulatory protein, C terminal CB4_00033 PF00072 Response regulator receiver domain CB4_00035 PF01475 Ferric uptake regulator family CB4_00036 PF00950 ABC 3 transport family CB4_00037 PF00005 ABC transporter CB4_00038 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CB4_00038 PF01297 Zinc-uptake complex component A periplasmic CB4_00039 PF00403 Heavy-metal-associated domain CB4_00040 PF07670 Nucleoside recognition CB4_00040 PF07664 Ferrous iron transport protein B C terminus CB4_00040 PF17910 FeoB cytosolic helical domain CB4_00040 PF02421 Ferrous iron transport protein B CB4_00041 PF02421 Ferrous iron transport protein B CB4_00041 PF07670 Nucleoside recognition CB4_00041 PF17910 FeoB cytosolic helical domain CB4_00041 PF07664 Ferrous iron transport protein B C terminus CB4_00045 PF00158 Sigma-54 interaction domain CB4_00045 PF00989 PAS fold CB4_00045 PF02954 Bacterial regulatory protein, Fis family CB4_00046 PF00202 Aminotransferase class-III CB4_00048 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CB4_00048 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CB4_00049 PF07690 Major Facilitator Superfamily CB4_00051 PF02915 Rubrerythrin CB4_00052 PF00324 Amino acid permease CB4_00053 PF00324 Amino acid permease CB4_00054 PF01226 Formate/nitrite transporter CB4_00055 PF07849 Protein of unknown function (DUF1641) CB4_00056 PF01568 Molydopterin dinucleotide binding domain CB4_00056 PF00037 4Fe-4S binding domain CB4_00056 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CB4_00056 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CB4_00056 PF00384 Molybdopterin oxidoreductase CB4_00058 PF02634 FdhD/NarQ family CB4_00059 PF02311 AraC-like ligand binding domain CB4_00059 PF12833 Helix-turn-helix domain CB4_00061 PF00474 Sodium:solute symporter family CB4_00062 PF08141 Small acid-soluble spore protein H family CB4_00075 PF04308 Ribonuclease H-like CB4_00076 PF00378 Enoyl-CoA hydratase/isomerase CB4_00077 PF00484 Carbonic anhydrase CB4_00079 PF13426 PAS domain CB4_00079 PF13188 PAS domain CB4_00079 PF00989 PAS fold CB4_00079 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00079 PF00512 His Kinase A (phospho-acceptor) domain CB4_00081 PF00881 Nitroreductase family CB4_00083 PF00291 Pyridoxal-phosphate dependent enzyme CB4_00083 PF00585 C-terminal regulatory domain of Threonine dehydratase CB4_00084 PF03459 TOBE domain CB4_00084 PF00005 ABC transporter CB4_00085 PF00528 Binding-protein-dependent transport system inner membrane component CB4_00087 PF12727 PBP superfamily domain CB4_00087 PF12728 Helix-turn-helix domain CB4_00088 PF03129 Anticodon binding domain CB4_00088 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CB4_00088 PF04073 Aminoacyl-tRNA editing domain CB4_00089 PF01053 Cys/Met metabolism PLP-dependent enzyme CB4_00090 PF01053 Cys/Met metabolism PLP-dependent enzyme CB4_00093 PF00324 Amino acid permease CB4_00094 PF01966 HD domain CB4_00096 PF04011 LemA family CB4_00098 PF00221 Aromatic amino acid lyase CB4_00099 PF00083 Sugar (and other) transporter CB4_00100 PF00491 Arginase family CB4_00101 PF01979 Amidohydrolase family CB4_00102 PF17391 Urocanase N-terminal domain CB4_00102 PF17392 Urocanase C-terminal domain CB4_00102 PF01175 Urocanase Rossmann-like domain CB4_00103 PF04397 LytTr DNA-binding domain CB4_00103 PF00072 Response regulator receiver domain CB4_00105 PF00324 Amino acid permease CB4_00106 PF00221 Aromatic amino acid lyase CB4_00107 PF09021 HutP CB4_00110 PF00155 Aminotransferase class I and II CB4_00110 PF00392 Bacterial regulatory proteins, gntR family CB4_00111 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CB4_00115 PF01040 UbiA prenyltransferase family CB4_00116 PF00672 HAMP domain CB4_00116 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00116 PF05227 CHASE3 domain CB4_00118 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CB4_00119 PF01047 MarR family CB4_00121 PF01370 NAD dependent epimerase/dehydratase family CB4_00122 PF12867 DinB superfamily CB4_00124 PF01380 SIS domain CB4_00125 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CB4_00125 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CB4_00125 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CB4_00125 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CB4_00126 PF07949 YbbR-like protein CB4_00127 PF02457 DisA bacterial checkpoint controller nucleotide-binding CB4_00129 PF13490 Putative zinc-finger CB4_00130 PF08281 Sigma-70, region 4 CB4_00130 PF04542 Sigma-70 region 2 CB4_00131 PF00491 Arginase family CB4_00152 PF01522 Polysaccharide deacetylase CB4_00153 PF17898 Spore germination GerD central core domain CB4_00154 PF10609 NUBPL iron-transfer P-loop NTPase CB4_00155 PF01520 N-acetylmuramoyl-L-alanine amidase CB4_00157 PF00380 Ribosomal protein S9/S16 CB4_00158 PF00572 Ribosomal protein L13 CB4_00159 PF00270 DEAD/DEAH box helicase CB4_00159 PF09382 RQC domain CB4_00159 PF16124 RecQ zinc-binding CB4_00159 PF00570 HRDC domain CB4_00159 PF00271 Helicase conserved C-terminal domain CB4_00160 PF07730 Histidine kinase CB4_00161 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00163 PF01416 tRNA pseudouridine synthase CB4_00165 PF00005 ABC transporter CB4_00166 PF00005 ABC transporter CB4_00167 PF01196 Ribosomal protein L17 CB4_00168 PF01000 RNA polymerase Rpb3/RpoA insert domain CB4_00168 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CB4_00168 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CB4_00169 PF00411 Ribosomal protein S11 CB4_00170 PF00416 Ribosomal protein S13/S18 CB4_00171 PF01176 Translation initiation factor 1A / IF-1 CB4_00172 PF00557 Metallopeptidase family M24 CB4_00173 PF05191 Adenylate kinase, active site lid CB4_00174 PF00344 SecY translocase CB4_00175 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CB4_00176 PF00327 Ribosomal protein L30p/L7e CB4_00177 PF00333 Ribosomal protein S5, N-terminal domain CB4_00177 PF03719 Ribosomal protein S5, C-terminal domain CB4_00178 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CB4_00179 PF00347 Ribosomal protein L6 CB4_00180 PF00410 Ribosomal protein S8 CB4_00181 PF00253 Ribosomal protein S14p/S29e CB4_00182 PF00673 ribosomal L5P family C-terminus CB4_00182 PF00281 Ribosomal protein L5 CB4_00183 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CB4_00183 PF00467 KOW motif CB4_00184 PF00238 Ribosomal protein L14p/L23e CB4_00185 PF00366 Ribosomal protein S17 CB4_00186 PF00831 Ribosomal L29 protein CB4_00187 PF00252 Ribosomal protein L16p/L10e CB4_00188 PF07650 KH domain CB4_00188 PF00189 Ribosomal protein S3, C-terminal domain CB4_00189 PF00237 Ribosomal protein L22p/L17e CB4_00190 PF00203 Ribosomal protein S19 CB4_00191 PF03947 Ribosomal Proteins L2, C-terminal domain CB4_00191 PF00181 Ribosomal Proteins L2, RNA binding domain CB4_00192 PF00276 Ribosomal protein L23 CB4_00193 PF00573 Ribosomal protein L4/L1 family CB4_00194 PF00297 Ribosomal protein L3 CB4_00195 PF00338 Ribosomal protein S10p/S20e CB4_00197 PF08447 PAS fold CB4_00197 PF13426 PAS domain CB4_00197 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00201 PF01966 HD domain CB4_00202 PF01814 Hemerythrin HHE cation binding domain CB4_00203 PF01814 Hemerythrin HHE cation binding domain CB4_00206 PF13411 MerR HTH family regulatory protein CB4_00222 PF01895 PhoU domain CB4_00223 PF01098 Cell cycle protein CB4_00224 PF00009 Elongation factor Tu GTP binding domain CB4_00224 PF03143 Elongation factor Tu C-terminal domain CB4_00224 PF03144 Elongation factor Tu domain 2 CB4_00225 PF03764 Elongation factor G, domain IV CB4_00225 PF00009 Elongation factor Tu GTP binding domain CB4_00225 PF00679 Elongation factor G C-terminus CB4_00225 PF03144 Elongation factor Tu domain 2 CB4_00225 PF14492 Elongation Factor G, domain II CB4_00226 PF00177 Ribosomal protein S7p/S5e CB4_00227 PF00164 Ribosomal protein S12/S23 CB4_00228 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CB4_00229 PF04998 RNA polymerase Rpb1, domain 5 CB4_00229 PF04997 RNA polymerase Rpb1, domain 1 CB4_00229 PF00623 RNA polymerase Rpb1, domain 2 CB4_00229 PF04983 RNA polymerase Rpb1, domain 3 CB4_00229 PF05000 RNA polymerase Rpb1, domain 4 CB4_00230 PF04565 RNA polymerase Rpb2, domain 3 CB4_00230 PF04561 RNA polymerase Rpb2, domain 2 CB4_00230 PF00562 RNA polymerase Rpb2, domain 6 CB4_00230 PF04563 RNA polymerase beta subunit CB4_00230 PF10385 RNA polymerase beta subunit external 1 domain CB4_00230 PF04560 RNA polymerase Rpb2, domain 7 CB4_00231 PF05175 Methyltransferase small domain CB4_00232 PF16320 Ribosomal protein L7/L12 dimerisation domain CB4_00232 PF00542 Ribosomal protein L7/L12 C-terminal domain CB4_00233 PF00466 Ribosomal protein L10 CB4_00234 PF00687 Ribosomal protein L1p/L10e family CB4_00235 PF03946 Ribosomal protein L11, N-terminal domain CB4_00235 PF00298 Ribosomal protein L11, RNA binding domain CB4_00236 PF00467 KOW motif CB4_00236 PF02357 Transcription termination factor nusG CB4_00237 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CB4_00238 PF00471 Ribosomal protein L33 CB4_00239 PF00672 HAMP domain CB4_00239 PF02743 Cache domain CB4_00239 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00240 PF08281 Sigma-70, region 4 CB4_00240 PF04542 Sigma-70 region 2 CB4_00241 PF05991 YacP-like NYN domain CB4_00242 PF08032 RNA 2'-O ribose methyltransferase substrate binding CB4_00242 PF00588 SpoU rRNA Methylase family CB4_00243 PF00636 Ribonuclease III domain CB4_00244 PF01406 tRNA synthetases class I (C) catalytic domain CB4_00244 PF09190 DALR domain CB4_00245 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_00245 PF06426 Serine acetyltransferase, N-terminal CB4_00246 PF00749 tRNA synthetases class I (E and Q), catalytic domain CB4_00247 PF02542 YgbB family CB4_00248 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CB4_00250 PF02559 CarD-like/TRCF domain CB4_00251 PF01066 CDP-alcohol phosphatidyltransferase CB4_00252 PF10635 DisA bacterial checkpoint controller linker region CB4_00252 PF02457 DisA bacterial checkpoint controller nucleotide-binding CB4_00253 PF18073 Rubredoxin metal binding domain CB4_00254 PF10431 C-terminal, D2-small domain, of ClpB protein CB4_00254 PF02861 Clp amino terminal domain, pathogenicity island component CB4_00254 PF17871 AAA lid domain CB4_00254 PF07724 AAA domain (Cdc48 subfamily) CB4_00254 PF00004 ATPase family associated with various cellular activities (AAA) CB4_00255 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CB4_00256 PF02151 UvrB/uvrC motif CB4_00257 PF05848 CtsR N-terminal HTH domain CB4_00257 PF17727 CtsR C-terminal dimerization domain CB4_00258 PF00005 ABC transporter CB4_00259 PF00528 Binding-protein-dependent transport system inner membrane component CB4_00260 PF00528 Binding-protein-dependent transport system inner membrane component CB4_00261 PF12849 PBP superfamily domain CB4_00262 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00262 PF12729 Four helix bundle sensory module for signal transduction CB4_00262 PF00672 HAMP domain CB4_00263 PF01609 Transposase DDE domain CB4_00268 PF01336 OB-fold nucleic acid binding domain CB4_00268 PF00152 tRNA synthetases class II (D, K and N) CB4_00269 PF03449 Transcription elongation factor, N-terminal CB4_00269 PF01272 Transcription elongation factor, GreA/GreB, C-term CB4_00270 PF01207 Dihydrouridine synthase (Dus) CB4_00271 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CB4_00272 PF02152 Dihydroneopterin aldolase CB4_00273 PF00809 Pterin binding enzyme CB4_00274 PF01063 Amino-transferase class IV CB4_00275 PF00117 Glutamine amidotransferase class-I CB4_00276 PF00425 chorismate binding enzyme CB4_00276 PF04715 Anthranilate synthase component I, N terminal region CB4_00277 PF00291 Pyridoxal-phosphate dependent enzyme CB4_00278 PF01430 Hsp33 protein CB4_00279 PF03309 Type III pantothenate kinase CB4_00280 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CB4_00280 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CB4_00281 PF00890 FAD binding domain CB4_00281 PF02910 Fumarate reductase flavoprotein C-term CB4_00282 PF02445 Quinolinate synthetase A protein CB4_00283 PF01434 Peptidase family M41 CB4_00283 PF06480 FtsH Extracellular CB4_00283 PF00004 ATPase family associated with various cellular activities (AAA) CB4_00283 PF17862 AAA+ lid domain CB4_00285 PF01171 PP-loop family CB4_00285 PF09179 TilS substrate binding domain CB4_00285 PF11734 TilS substrate C-terminal domain CB4_00288 PF07228 Stage II sporulation protein E (SpoIIE) CB4_00289 PF04977 Septum formation initiator CB4_00291 PF07873 YabP family CB4_00292 PF01479 S4 domain CB4_00293 PF03819 MazG nucleotide pyrophosphohydrolase domain CB4_00293 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00294 PF14667 Polysaccharide biosynthesis C-terminal domain CB4_00294 PF01943 Polysaccharide biosynthesis protein CB4_00295 PF15714 Stage V sporulation protein T C-terminal, transcription factor CB4_00295 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CB4_00296 PF13145 PPIC-type PPIASE domain CB4_00297 PF02559 CarD-like/TRCF domain CB4_00297 PF00271 Helicase conserved C-terminal domain CB4_00297 PF00270 DEAD/DEAH box helicase CB4_00297 PF03461 TRCF domain CB4_00297 PF17757 UvrB interaction domain CB4_00299 PF01195 Peptidyl-tRNA hydrolase CB4_00300 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CB4_00300 PF14572 Phosphoribosyl synthetase-associated domain CB4_00301 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_00301 PF00483 Nucleotidyl transferase CB4_00302 PF04026 SpoVG CB4_00303 PF01042 Endoribonuclease L-PSP CB4_00304 PF09182 Bacterial purine repressor, N-terminal CB4_00304 PF00156 Phosphoribosyl transferase domain CB4_00305 PF08544 GHMP kinases C terminal CB4_00305 PF00288 GHMP kinases N terminal domain CB4_00306 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_00307 PF06257 Biofilm formation stimulator VEG CB4_00308 PF05582 YabG peptidase U57 CB4_00309 PF00398 Ribosomal RNA adenine dimethylase CB4_00310 PF13662 Toprim domain CB4_00310 PF13331 Domain of unknown function (DUF4093) CB4_00311 PF06725 3D domain CB4_00311 PF01476 LysM domain CB4_00312 PF01026 TatD related DNase CB4_00313 PF08264 Anticodon-binding domain of tRNA CB4_00313 PF01588 Putative tRNA binding domain CB4_00313 PF09334 tRNA synthetases class I (M) CB4_00314 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CB4_00314 PF18277 AbrB C-terminal domain CB4_00316 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00317 PF05175 Methyltransferase small domain CB4_00318 PF06156 Initiation control protein YabA CB4_00319 PF04468 PSP1 C-terminal conserved region CB4_00320 PF09115 DNA polymerase III, delta subunit, C terminal CB4_00321 PF03885 Protein of unknown function (DUF327) CB4_00322 PF02223 Thymidylate kinase CB4_00323 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CB4_00323 PF01276 Orn/Lys/Arg decarboxylase, major domain CB4_00330 PF07441 SigmaK-factor processing regulatory protein BofA CB4_00331 PF02517 CPBP intramembrane metalloprotease CB4_00332 PF02132 RecR protein CB4_00332 PF13662 Toprim domain CB4_00333 PF02575 YbaB/EbfC DNA-binding family CB4_00334 PF12169 DNA polymerase III subunits gamma and tau domain III CB4_00335 PF00512 His Kinase A (phospho-acceptor) domain CB4_00335 PF13188 PAS domain CB4_00335 PF13426 PAS domain CB4_00335 PF00989 PAS fold CB4_00335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00340 PF00440 Bacterial regulatory proteins, tetR family CB4_00341 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CB4_00343 PF14437 MafB19-like deaminase CB4_00346 PF12146 Serine aminopeptidase, S33 CB4_00347 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_00347 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_00347 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_00348 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CB4_00348 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CB4_00349 PF00378 Enoyl-CoA hydratase/isomerase CB4_00350 PF00989 PAS fold CB4_00350 PF00158 Sigma-54 interaction domain CB4_00350 PF02954 Bacterial regulatory protein, Fis family CB4_00352 PF00216 Bacterial DNA-binding protein CB4_00354 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00355 PF07685 CobB/CobQ-like glutamine amidotransferase domain CB4_00355 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CB4_00356 PF11760 Cobalamin synthesis G N-terminal CB4_00356 PF11761 Cobalamin biosynthesis central region CB4_00356 PF01890 Cobalamin synthesis G C-terminus CB4_00357 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00358 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00359 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00360 PF01888 CbiD CB4_00361 PF02570 Precorrin-8X methylmutase CB4_00362 PF02571 Precorrin-6x reductase CbiJ/CobK CB4_00363 PF01903 CbiX CB4_00364 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CB4_00364 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00365 PF00072 Response regulator receiver domain CB4_00365 PF00196 Bacterial regulatory proteins, luxR family CB4_00366 PF07730 Histidine kinase CB4_00369 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CB4_00369 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CB4_00370 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CB4_00370 PF02403 Seryl-tRNA synthetase N-terminal domain CB4_00371 PF01174 SNO glutamine amidotransferase family CB4_00372 PF01680 SOR/SNZ family CB4_00373 PF07943 Penicillin-binding protein 5, C-terminal domain CB4_00373 PF00768 D-alanyl-D-alanine carboxypeptidase CB4_00374 PF00571 CBS domain CB4_00374 PF00478 IMP dehydrogenase / GMP reductase domain CB4_00375 PF14175 YaaC-like Protein CB4_00379 PF03989 DNA gyrase C-terminal domain, beta-propeller CB4_00379 PF00521 DNA gyrase/topoisomerase IV, subunit A CB4_00380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00380 PF00204 DNA gyrase B CB4_00380 PF00986 DNA gyrase B subunit, carboxyl terminus CB4_00380 PF01751 Toprim domain CB4_00381 PF04025 Domain of unknown function (DUF370) CB4_00382 PF02463 RecF/RecN/SMC N terminal domain CB4_00384 PF02767 DNA polymerase III beta subunit, central domain CB4_00384 PF00712 DNA polymerase III beta subunit, N-terminal domain CB4_00384 PF02768 DNA polymerase III beta subunit, C-terminal domain CB4_00385 PF08299 Bacterial dnaA protein helix-turn-helix CB4_00385 PF11638 DnaA N-terminal domain CB4_00385 PF00308 Bacterial dnaA protein CB4_00386 PF00825 Ribonuclease P CB4_00387 PF02096 60Kd inner membrane protein CB4_00388 PF01424 R3H domain CB4_00388 PF14804 Jag N-terminus CB4_00389 PF01926 50S ribosome-binding GTPase CB4_00389 PF12631 MnmE helical domain CB4_00389 PF10396 GTP-binding protein TrmE N-terminus CB4_00390 PF13932 GidA associated domain CB4_00390 PF01134 Glucose inhibited division protein A CB4_00391 PF02527 rRNA small subunit methyltransferase G CB4_00392 PF17762 HTH domain found in ParB protein CB4_00392 PF02195 ParB-like nuclease domain CB4_00393 PF13614 AAA domain CB4_00394 PF02195 ParB-like nuclease domain CB4_00394 PF17762 HTH domain found in ParB protein CB4_00395 PF00266 Aminotransferase class-V CB4_00397 PF06866 Protein of unknown function (DUF1256) CB4_00399 PF00924 Mechanosensitive ion channel CB4_00400 PF06107 Bacterial protein of unknown function (DUF951) CB4_00402 PF06071 Protein of unknown function (DUF933) CB4_00402 PF01926 50S ribosome-binding GTPase CB4_00403 PF01250 Ribosomal protein S6 CB4_00404 PF00436 Single-strand binding protein family CB4_00405 PF01084 Ribosomal protein S18 CB4_00407 PF01368 DHH family CB4_00407 PF02272 DHHA1 domain CB4_00408 PF03948 Ribosomal protein L9, C-terminal domain CB4_00408 PF01281 Ribosomal protein L9, N-terminal domain CB4_00409 PF00772 DnaB-like helicase N terminal domain CB4_00409 PF03796 DnaB-like helicase C terminal domain CB4_00409 PF14528 LAGLIDADG-like domain CB4_00410 PF00709 Adenylosuccinate synthetase CB4_00411 PF01551 Peptidase family M23 CB4_00412 PF00072 Response regulator receiver domain CB4_00412 PF00486 Transcriptional regulatory protein, C terminal CB4_00413 PF13426 PAS domain CB4_00413 PF00672 HAMP domain CB4_00413 PF00512 His Kinase A (phospho-acceptor) domain CB4_00413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00414 PF07435 YycH protein CB4_00415 PF09648 YycH protein CB4_00416 PF00753 Metallo-beta-lactamase superfamily CB4_00417 PF13180 PDZ domain CB4_00419 PF02590 Predicted SPOUT methyltransferase CB4_00421 PF00106 short chain dehydrogenase CB4_00422 PF00107 Zinc-binding dehydrogenase CB4_00422 PF08240 Alcohol dehydrogenase GroES-like domain CB4_00424 PF00106 short chain dehydrogenase CB4_00425 PF04397 LytTr DNA-binding domain CB4_00425 PF00072 Response regulator receiver domain CB4_00426 PF06580 Histidine kinase CB4_00426 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00427 PF00395 S-layer homology domain CB4_00427 PF06452 Carbohydrate family 9 binding domain-like CB4_00427 PF02018 Carbohydrate binding domain CB4_00427 PF00331 Glycosyl hydrolase family 10 CB4_00429 PF03323 Bacillus/Clostridium GerA spore germination protein CB4_00430 PF03845 Spore germination protein CB4_00433 PF04542 Sigma-70 region 2 CB4_00433 PF08281 Sigma-70, region 4 CB4_00434 PF11738 Protein of unknown function (DUF3298) CB4_00434 PF13739 Deacetylase PdaC CB4_00436 PF02743 Cache domain CB4_00436 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00436 PF00672 HAMP domain CB4_00437 PF00892 EamA-like transporter family CB4_00438 PF00155 Aminotransferase class I and II CB4_00438 PF00392 Bacterial regulatory proteins, gntR family CB4_00440 PF04172 LrgB-like family CB4_00441 PF03788 LrgA family CB4_00442 PF03466 LysR substrate binding domain CB4_00442 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_00443 PF08141 Small acid-soluble spore protein H family CB4_00444 PF01050 Mannose-6-phosphate isomerase CB4_00444 PF00483 Nucleotidyl transferase CB4_00446 PF00672 HAMP domain CB4_00446 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00447 PF00486 Transcriptional regulatory protein, C terminal CB4_00447 PF00072 Response regulator receiver domain CB4_00448 PF16736 Single Cache-like CB4_00448 PF00512 His Kinase A (phospho-acceptor) domain CB4_00448 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00448 PF00989 PAS fold CB4_00450 PF00271 Helicase conserved C-terminal domain CB4_00450 PF04434 SWIM zinc finger CB4_00450 PF00176 SNF2 family N-terminal domain CB4_00451 PF00395 S-layer homology domain CB4_00452 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CB4_00452 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CB4_00453 PF03466 LysR substrate binding domain CB4_00453 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_00454 PF00270 DEAD/DEAH box helicase CB4_00454 PF00271 Helicase conserved C-terminal domain CB4_00455 PF09962 Uncharacterized conserved protein (DUF2196) CB4_00457 PF08482 ATP-dependent helicase C-terminal CB4_00457 PF04408 Helicase associated domain (HA2) CB4_00457 PF00271 Helicase conserved C-terminal domain CB4_00457 PF00270 DEAD/DEAH box helicase CB4_00458 PF04238 Protein of unknown function (DUF420) CB4_00459 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CB4_00459 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CB4_00460 PF00115 Cytochrome C and Quinol oxidase polypeptide I CB4_00461 PF00510 Cytochrome c oxidase subunit III CB4_00463 PF00392 Bacterial regulatory proteins, gntR family CB4_00463 PF07729 FCD domain CB4_00465 PF02653 Branched-chain amino acid transport system / permease component CB4_00466 PF02653 Branched-chain amino acid transport system / permease component CB4_00466 PF11862 Domain of unknown function (DUF3382) CB4_00467 PF00005 ABC transporter CB4_00467 PF12399 Branched-chain amino acid ATP-binding cassette transporter CB4_00468 PF00005 ABC transporter CB4_00469 PF02386 Cation transport protein CB4_00470 PF01171 PP-loop family CB4_00471 PF05198 Translation initiation factor IF-3, N-terminal domain CB4_00471 PF00707 Translation initiation factor IF-3, C-terminal domain CB4_00472 PF02222 ATP-grasp domain CB4_00473 PF00440 Bacterial regulatory proteins, tetR family CB4_00474 PF13460 NAD(P)H-binding CB4_00474 PF11066 Protein of unknown function (DUF2867) CB4_00475 PF01904 Protein of unknown function DUF72 CB4_00476 PF08543 Phosphomethylpyrimidine kinase CB4_00477 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00478 PF00474 Sodium:solute symporter family CB4_00479 PF01625 Peptide methionine sulfoxide reductase CB4_00479 PF01641 SelR domain CB4_00480 PF00578 AhpC/TSA family CB4_00480 PF10417 C-terminal domain of 1-Cys peroxiredoxin CB4_00481 PF02592 Putative vitamin uptake transporter CB4_00482 PF13520 Amino acid permease CB4_00498 PF00378 Enoyl-CoA hydratase/isomerase CB4_00500 PF05816 Toxic anion resistance protein (TelA) CB4_00501 PF02245 Methylpurine-DNA glycosylase (MPG) CB4_00502 PF00753 Metallo-beta-lactamase superfamily CB4_00506 PF03063 Prismane/CO dehydrogenase family CB4_00510 PF04073 Aminoacyl-tRNA editing domain CB4_00512 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00512 PF00672 HAMP domain CB4_00512 PF02743 Cache domain CB4_00514 PF00563 EAL domain CB4_00514 PF03707 Bacterial signalling protein N terminal repeat CB4_00514 PF00990 Diguanylate cyclase, GGDEF domain CB4_00516 PF13614 AAA domain CB4_00518 PF01521 Iron-sulphur cluster biosynthesis CB4_00519 PF00892 EamA-like transporter family CB4_00520 PF03422 Carbohydrate binding module (family 6) CB4_00520 PF00457 Glycosyl hydrolases family 11 CB4_00520 PF01522 Polysaccharide deacetylase CB4_00521 PF00005 ABC transporter CB4_00525 PF04241 Protein of unknown function (DUF423) CB4_00528 PF03631 Virulence factor BrkB CB4_00529 PF17785 PUA-like domain CB4_00529 PF10672 S-adenosylmethionine-dependent methyltransferase CB4_00530 PF01522 Polysaccharide deacetylase CB4_00530 PF14883 Hypothetical glycosyl hydrolase family 13 CB4_00532 PF00005 ABC transporter CB4_00533 PF05975 Bacterial ABC transporter protein EcsB CB4_00534 PF01545 Cation efflux family CB4_00534 PF16916 Dimerisation domain of Zinc Transporter CB4_00536 PF03009 Glycerophosphoryl diester phosphodiesterase family CB4_00537 PF05525 Branched-chain amino acid transport protein CB4_00538 PF13537 Glutamine amidotransferase domain CB4_00538 PF00733 Asparagine synthase CB4_00540 PF07293 Protein of unknown function (DUF1450) CB4_00541 PF00582 Universal stress protein family CB4_00542 PF00849 RNA pseudouridylate synthase CB4_00542 PF01479 S4 domain CB4_00543 PF01966 HD domain CB4_00544 PF08741 YwhD family CB4_00545 PF00905 Penicillin binding protein transpeptidase domain CB4_00545 PF00912 Transglycosylase CB4_00547 PF17284 Spermidine synthase tetramerisation domain CB4_00548 PF00491 Arginase family CB4_00550 PF05746 DALR anticodon binding domain CB4_00550 PF00750 tRNA synthetases class I (R) CB4_00550 PF03485 Arginyl tRNA synthetase N terminal domain CB4_00551 PF02743 Cache domain CB4_00551 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00551 PF00672 HAMP domain CB4_00552 PF02754 Cysteine-rich domain CB4_00552 PF13183 4Fe-4S dicluster domain CB4_00553 PF00108 Thiolase, N-terminal domain CB4_00553 PF02803 Thiolase, C-terminal domain CB4_00554 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CB4_00554 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CB4_00555 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_00555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_00555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_00556 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_00556 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_00556 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_00559 PF01642 Methylmalonyl-CoA mutase CB4_00559 PF02310 B12 binding domain CB4_00560 PF05066 HB1, ASXL, restriction endonuclease HTH domain CB4_00561 PF00117 Glutamine amidotransferase class-I CB4_00561 PF06418 CTP synthase N-terminus CB4_00562 PF00072 Response regulator receiver domain CB4_00563 PF01116 Fructose-bisphosphate aldolase class-II CB4_00564 PF00923 Transaldolase/Fructose-6-phosphate aldolase CB4_00565 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CB4_00566 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CB4_00567 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CB4_00567 PF07498 Rho termination factor, N-terminal domain CB4_00567 PF07497 Rho termination factor, RNA-binding domain CB4_00568 PF02673 Bacitracin resistance protein BacA CB4_00569 PF02386 Cation transport protein CB4_00571 PF01197 Ribosomal protein L31 CB4_00574 PF03462 PCRF domain CB4_00574 PF00472 RF-1 domain CB4_00575 PF13847 Methyltransferase domain CB4_00575 PF17827 PrmC N-terminal domain CB4_00576 PF09551 Stage II sporulation protein R (spore_II_R) CB4_00577 PF03481 Putative GTP-binding controlling metal-binding CB4_00577 PF01300 Telomere recombination CB4_00578 PF02659 Putative manganese efflux pump CB4_00579 PF02535 ZIP Zinc transporter CB4_00580 PF01451 Low molecular weight phosphotyrosine protein phosphatase CB4_00581 PF00672 HAMP domain CB4_00581 PF12729 Four helix bundle sensory module for signal transduction CB4_00581 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00582 PF02502 Ribose/Galactose Isomerase CB4_00583 PF04260 Protein of unknown function (DUF436) CB4_00584 PF00464 Serine hydroxymethyltransferase CB4_00586 PF02350 UDP-N-acetylglucosamine 2-epimerase CB4_00587 PF00395 S-layer homology domain CB4_00588 PF00108 Thiolase, N-terminal domain CB4_00588 PF02803 Thiolase, C-terminal domain CB4_00591 PF00119 ATP synthase A chain CB4_00592 PF00137 ATP synthase subunit C CB4_00593 PF00430 ATP synthase B/B' CF(0) CB4_00594 PF00213 ATP synthase delta (OSCP) subunit CB4_00595 PF00306 ATP synthase alpha/beta chain, C terminal domain CB4_00595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CB4_00595 PF02874 ATP synthase alpha/beta family, beta-barrel domain CB4_00596 PF00231 ATP synthase CB4_00597 PF02874 ATP synthase alpha/beta family, beta-barrel domain CB4_00597 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CB4_00598 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CB4_00598 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CB4_00599 PF01451 Low molecular weight phosphotyrosine protein phosphatase CB4_00600 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CB4_00601 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CB4_00602 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CB4_00603 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CB4_00604 PF00146 NADH dehydrogenase CB4_00606 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CB4_00607 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CB4_00608 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CB4_00608 PF00361 Proton-conducting membrane transporter CB4_00608 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CB4_00609 PF00361 Proton-conducting membrane transporter CB4_00609 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CB4_00610 PF00361 Proton-conducting membrane transporter CB4_00611 PF06612 Protein of unknown function (DUF1146) CB4_00613 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CB4_00614 PF08486 Stage II sporulation protein CB4_00616 PF01551 Peptidase family M23 CB4_00617 PF12116 Stage III sporulation protein D CB4_00619 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CB4_00619 PF00460 Flagella basal body rod protein CB4_00620 PF00460 Flagella basal body rod protein CB4_00620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CB4_00622 PF01037 Lrp/AsnC ligand binding domain CB4_00623 PF00155 Aminotransferase class I and II CB4_00624 PF03808 Glycosyl transferase WecB/TagA/CpsF family CB4_00625 PF00953 Glycosyl transferase family 4 CB4_00627 PF00342 Phosphoglucose isomerase CB4_00628 PF01061 ABC-2 type transporter CB4_00629 PF00005 ABC transporter CB4_00630 PF13847 Methyltransferase domain CB4_00632 PF08544 GHMP kinases C terminal CB4_00632 PF00288 GHMP kinases N terminal domain CB4_00633 PF13580 SIS domain CB4_00634 PF00483 Nucleotidyl transferase CB4_00635 PF08645 Polynucleotide kinase 3 phosphatase CB4_00637 PF08889 WbqC-like protein family CB4_00638 PF00535 Glycosyl transferase family 2 CB4_00640 PF05853 beta-keto acid cleavage enzyme CB4_00642 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CB4_00643 PF00483 Nucleotidyl transferase CB4_00645 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CB4_00646 PF16363 GDP-mannose 4,6 dehydratase CB4_00647 PF04321 RmlD substrate binding domain CB4_00648 PF00535 Glycosyl transferase family 2 CB4_00649 PF02397 Bacterial sugar transferase CB4_00654 PF00395 S-layer homology domain CB4_00655 PF01047 MarR family CB4_00657 PF07690 Major Facilitator Superfamily CB4_00658 PF13533 Biotin-lipoyl like CB4_00668 PF03062 MBOAT, membrane-bound O-acyltransferase family CB4_00669 PF13180 PDZ domain CB4_00669 PF03572 Peptidase family S41 CB4_00671 PF02773 S-adenosylmethionine synthetase, C-terminal domain CB4_00671 PF00438 S-adenosylmethionine synthetase, N-terminal domain CB4_00671 PF02772 S-adenosylmethionine synthetase, central domain CB4_00672 PF07730 Histidine kinase CB4_00672 PF05384 Sensor protein DegS CB4_00672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00673 PF00196 Bacterial regulatory proteins, luxR family CB4_00673 PF00072 Response regulator receiver domain CB4_00677 PF04851 Type III restriction enzyme, res subunit CB4_00677 PF00271 Helicase conserved C-terminal domain CB4_00678 PF00156 Phosphoribosyl transferase domain CB4_00679 PF08534 Redoxin CB4_00683 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CB4_00683 PF00460 Flagella basal body rod protein CB4_00684 PF00669 Bacterial flagellin N-terminal helical region CB4_00684 PF00700 Bacterial flagellin C-terminal helical region CB4_00686 PF02623 FliW protein CB4_00687 PF02599 Global regulator protein family CB4_00688 PF00669 Bacterial flagellin N-terminal helical region CB4_00688 PF00700 Bacterial flagellin C-terminal helical region CB4_00693 PF02465 Flagellar hook-associated protein 2 N-terminus CB4_00693 PF07196 Flagellin hook IN motif CB4_00693 PF07195 Flagellar hook-associated protein 2 C-terminus CB4_00694 PF02561 Flagellar protein FliS CB4_00699 PF00700 Bacterial flagellin C-terminal helical region CB4_00699 PF00669 Bacterial flagellin N-terminal helical region CB4_00699 PF00669 Bacterial flagellin N-terminal helical region CB4_00699 PF00700 Bacterial flagellin C-terminal helical region CB4_00700 PF00528 Binding-protein-dependent transport system inner membrane component CB4_00701 PF00313 'Cold-shock' DNA-binding domain CB4_00702 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CB4_00702 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CB4_00703 PF01043 SecA preprotein cross-linking domain CB4_00703 PF07517 SecA DEAD-like domain CB4_00703 PF07516 SecA Wing and Scaffold domain CB4_00704 PF00472 RF-1 domain CB4_00704 PF03462 PCRF domain CB4_00705 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CB4_00705 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_00706 PF00456 Transketolase, thiamine diphosphate binding domain CB4_00707 PF02780 Transketolase, C-terminal domain CB4_00707 PF02779 Transketolase, pyrimidine binding domain CB4_00710 PF02774 Semialdehyde dehydrogenase, dimerisation domain CB4_00710 PF01118 Semialdehyde dehydrogenase, NAD binding domain CB4_00711 PF00696 Amino acid kinase family CB4_00712 PF00202 Aminotransferase class-III CB4_00713 PF00117 Glutamine amidotransferase class-I CB4_00713 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CB4_00714 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CB4_00714 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CB4_00714 PF02142 MGS-like domain CB4_00715 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CB4_00715 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CB4_00718 PF05362 Lon protease (S16) C-terminal proteolytic domain CB4_00718 PF13654 AAA domain CB4_00719 PF00764 Arginosuccinate synthase CB4_00720 PF14698 Argininosuccinate lyase C-terminal CB4_00720 PF00206 Lyase CB4_00721 PF00005 ABC transporter CB4_00722 PF02687 FtsX-like permease family CB4_00722 PF18075 FtsX extracellular domain CB4_00723 PF01551 Peptidase family M23 CB4_00723 PF01476 LysM domain CB4_00724 PF17820 PDZ domain CB4_00724 PF03572 Peptidase family S41 CB4_00724 PF01471 Putative peptidoglycan binding domain CB4_00725 PF17820 PDZ domain CB4_00728 PF02151 UvrB/uvrC motif CB4_00728 PF04851 Type III restriction enzyme, res subunit CB4_00728 PF12344 Ultra-violet resistance protein B CB4_00728 PF17757 UvrB interaction domain CB4_00728 PF00271 Helicase conserved C-terminal domain CB4_00729 PF17755 UvrA DNA-binding domain CB4_00729 PF17760 UvrA interaction domain CB4_00730 PF07475 HPr Serine kinase C-terminal domain CB4_00730 PF02603 HPr Serine kinase N terminus CB4_00731 PF01790 Prolipoprotein diacylglyceryl transferase CB4_00732 PF13419 Haloacid dehalogenase-like hydrolase CB4_00733 PF14602 Hexapeptide repeat of succinyl-transferase CB4_00734 PF13393 Histidyl-tRNA synthetase CB4_00735 PF01634 ATP phosphoribosyltransferase CB4_00736 PF00815 Histidinol dehydrogenase CB4_00737 PF00475 Imidazoleglycerol-phosphate dehydratase CB4_00738 PF00117 Glutamine amidotransferase class-I CB4_00739 PF00977 Histidine biosynthesis protein CB4_00740 PF00977 Histidine biosynthesis protein CB4_00742 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CB4_00742 PF01502 Phosphoribosyl-AMP cyclohydrolase CB4_00743 PF12706 Beta-lactamase superfamily domain CB4_00744 PF01037 Lrp/AsnC ligand binding domain CB4_00760 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_00761 PF03668 P-loop ATPase protein family CB4_00762 PF01933 Uncharacterised protein family UPF0052 CB4_00763 PF14527 WhiA LAGLIDADG-like domain CB4_00763 PF10298 WhiA N-terminal LAGLIDADG-like domain CB4_00763 PF02650 WhiA C-terminal HTH domain CB4_00764 PF00381 PTS HPr component phosphorylation site CB4_00765 PF00574 Clp protease CB4_00770 PF04552 Sigma-54, DNA binding domain CB4_00770 PF00309 Sigma-54 factor, Activator interacting domain (AID) CB4_00770 PF04963 Sigma-54 factor, core binding domain CB4_00771 PF04198 Putative sugar-binding domain CB4_00772 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CB4_00772 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CB4_00773 PF00162 Phosphoglycerate kinase CB4_00774 PF00121 Triosephosphate isomerase CB4_00775 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CB4_00775 PF01676 Metalloenzyme superfamily CB4_00776 PF03952 Enolase, N-terminal domain CB4_00776 PF00113 Enolase, C-terminal TIM barrel domain CB4_00777 PF01475 Ferric uptake regulator family CB4_00778 PF03840 Preprotein translocase SecG subunit CB4_00779 PF12146 Serine aminopeptidase, S33 CB4_00780 PF12146 Serine aminopeptidase, S33 CB4_00781 PF00575 S1 RNA binding domain CB4_00781 PF00773 RNB domain CB4_00781 PF08206 Ribonuclease B OB domain CB4_00781 PF17876 Cold shock domain CB4_00783 PF01668 SmpB protein CB4_00787 PF00990 Diguanylate cyclase, GGDEF domain CB4_00787 PF00563 EAL domain CB4_00787 PF03707 Bacterial signalling protein N terminal repeat CB4_00787 PF13188 PAS domain CB4_00788 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CB4_00788 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_00789 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CB4_00789 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CB4_00790 PF00877 NlpC/P60 family CB4_00792 PF01546 Peptidase family M20/M25/M40 CB4_00792 PF07687 Peptidase dimerisation domain CB4_00793 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CB4_00793 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_00793 PF14602 Hexapeptide repeat of succinyl-transferase CB4_00795 PF03949 Malic enzyme, NAD binding domain CB4_00795 PF00390 Malic enzyme, N-terminal domain CB4_00797 PF01968 Hydantoinase/oxoprolinase CB4_00797 PF05378 Hydantoinase/oxoprolinase N-terminal region CB4_00798 PF02538 Hydantoinase B/oxoprolinase CB4_00800 PF00989 PAS fold CB4_00800 PF00158 Sigma-54 interaction domain CB4_00800 PF02954 Bacterial regulatory protein, Fis family CB4_00801 PF02682 Carboxyltransferase domain, subdomain C and D CB4_00803 PF00698 Acyl transferase domain CB4_00803 PF08240 Alcohol dehydrogenase GroES-like domain CB4_00803 PF16197 Ketoacyl-synthetase C-terminal extension CB4_00803 PF00109 Beta-ketoacyl synthase, N-terminal domain CB4_00803 PF02801 Beta-ketoacyl synthase, C-terminal domain CB4_00803 PF08659 KR domain CB4_00803 PF00550 Phosphopantetheine attachment site CB4_00803 PF14765 Polyketide synthase dehydratase CB4_00805 PF00330 Aconitase family (aconitate hydratase) CB4_00805 PF00694 Aconitase C-terminal domain CB4_00806 PF09339 IclR helix-turn-helix domain CB4_00806 PF01614 Bacterial transcriptional regulator CB4_00808 PF01966 HD domain CB4_00808 PF00072 Response regulator receiver domain CB4_00809 PF00809 Pterin binding enzyme CB4_00809 PF02574 Homocysteine S-methyltransferase CB4_00809 PF02310 B12 binding domain CB4_00809 PF02607 B12 binding domain CB4_00809 PF02965 Vitamin B12 dependent methionine synthase, activation domain CB4_00810 PF02219 Methylenetetrahydrofolate reductase CB4_00810 PF02574 Homocysteine S-methyltransferase CB4_00811 PF07687 Peptidase dimerisation domain CB4_00811 PF01546 Peptidase family M20/M25/M40 CB4_00812 PF01522 Polysaccharide deacetylase CB4_00813 PF13358 DDE superfamily endonuclease CB4_00815 PF01751 Toprim domain CB4_00816 PF00293 NUDIX domain CB4_00818 PF02628 Cytochrome oxidase assembly protein CB4_00820 PF02630 SCO1/SenC CB4_00824 PF13556 PucR C-terminal helix-turn-helix domain CB4_00824 PF17853 GGDEF-like domain CB4_00824 PF06018 CodY GAF-like domain CB4_00825 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CB4_00825 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CB4_00831 PF11871 Domain of unknown function (DUF3391) CB4_00831 PF01966 HD domain CB4_00832 PF00005 ABC transporter CB4_00833 PF02913 FAD linked oxidases, C-terminal domain CB4_00833 PF01565 FAD binding domain CB4_00836 PF01145 SPFH domain / Band 7 family CB4_00836 PF15975 Flotillin CB4_00838 PF01476 LysM domain CB4_00838 PF06725 3D domain CB4_00840 PF00694 Aconitase C-terminal domain CB4_00840 PF00330 Aconitase family (aconitate hydratase) CB4_00842 PF07301 Protein of unknown function (DUF1453) CB4_00843 PF00392 Bacterial regulatory proteins, gntR family CB4_00843 PF07729 FCD domain CB4_00844 PF02652 L-lactate permease CB4_00845 PF02754 Cysteine-rich domain CB4_00846 PF13183 4Fe-4S dicluster domain CB4_00846 PF11870 Domain of unknown function (DUF3390) CB4_00846 PF02589 LUD domain CB4_00847 PF02589 LUD domain CB4_00848 PF03323 Bacillus/Clostridium GerA spore germination protein CB4_00849 PF05504 Spore germination B3/ GerAC like, C-terminal CB4_00853 PF00171 Aldehyde dehydrogenase family CB4_00854 PF00202 Aminotransferase class-III CB4_00856 PF02277 Phosphoribosyltransferase CB4_00857 PF07690 Major Facilitator Superfamily CB4_00858 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CB4_00858 PF07685 CobB/CobQ-like glutamine amidotransferase domain CB4_00859 PF14824 Sirohaem biosynthesis protein central CB4_00860 PF00881 Nitroreductase family CB4_00861 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CB4_00861 PF12557 Cob(I)alamin adenosyltransferase N terminal CB4_00862 PF00155 Aminotransferase class I and II CB4_00864 PF02654 Cobalamin-5-phosphate synthase CB4_00866 PF08544 GHMP kinases C terminal CB4_00866 PF00288 GHMP kinases N terminal domain CB4_00868 PF03186 CobD/Cbib protein CB4_00871 PF13396 Phospholipase_D-nuclease N-terminal CB4_00871 PF13091 PLD-like domain CB4_00872 PF01205 Uncharacterized protein family UPF0029 CB4_00872 PF09186 Domain of unknown function (DUF1949) CB4_00874 PF02401 LytB protein CB4_00875 PF00395 S-layer homology domain CB4_00875 PF02903 Alpha amylase, N-terminal ig-like domain CB4_00875 PF00128 Alpha amylase, catalytic domain CB4_00885 PF03807 NADP oxidoreductase coenzyme F420-dependent CB4_00885 PF14748 Pyrroline-5-carboxylate reductase dimerisation CB4_00886 PF00171 Aldehyde dehydrogenase family CB4_00887 PF00696 Amino acid kinase family CB4_00887 PF01472 PUA domain CB4_00888 PF03323 Bacillus/Clostridium GerA spore germination protein CB4_00892 PF00005 ABC transporter CB4_00894 PF01497 Periplasmic binding protein CB4_00895 PF01032 FecCD transport family CB4_00896 PF00005 ABC transporter CB4_00897 PF03960 ArsC family CB4_00898 PF00155 Aminotransferase class I and II CB4_00899 PF10417 C-terminal domain of 1-Cys peroxiredoxin CB4_00899 PF00578 AhpC/TSA family CB4_00927 PF00583 Acetyltransferase (GNAT) family CB4_00931 PF00583 Acetyltransferase (GNAT) family CB4_00932 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) CB4_00932 PF07581 The GLUG motif CB4_00936 PF00578 AhpC/TSA family CB4_00937 PF01597 Glycine cleavage H-protein CB4_00938 PF04309 Glycerol-3-phosphate responsive antiterminator CB4_00939 PF00230 Major intrinsic protein CB4_00940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CB4_00940 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CB4_00942 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CB4_00942 PF01266 FAD dependent oxidoreductase CB4_00945 PF04542 Sigma-70 region 2 CB4_00948 PF00005 ABC transporter CB4_00949 PF01458 Uncharacterized protein family (UPF0051) CB4_00950 PF00266 Aminotransferase class-V CB4_00951 PF01592 NifU-like N terminal domain CB4_00952 PF01458 Uncharacterized protein family (UPF0051) CB4_00953 PF00589 Phage integrase family CB4_00953 PF02899 Phage integrase, N-terminal SAM-like domain CB4_00955 PF16916 Dimerisation domain of Zinc Transporter CB4_00955 PF01545 Cation efflux family CB4_00957 PF12833 Helix-turn-helix domain CB4_00957 PF02311 AraC-like ligand binding domain CB4_00958 PF00892 EamA-like transporter family CB4_00961 PF01925 Sulfite exporter TauE/SafE CB4_00963 PF08827 Domain of unknown function (DUF1805) CB4_00964 PF11871 Domain of unknown function (DUF3391) CB4_00964 PF01966 HD domain CB4_00966 PF13426 PAS domain CB4_00966 PF07228 Stage II sporulation protein E (SpoIIE) CB4_00968 PF08447 PAS fold CB4_00968 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00968 PF13426 PAS domain CB4_00969 PF01740 STAS domain CB4_00971 PF00877 NlpC/P60 family CB4_00972 PF02702 Osmosensitive K+ channel His kinase sensor domain CB4_00973 PF02669 K+-transporting ATPase, c chain CB4_00975 PF03814 Potassium-transporting ATPase A subunit CB4_00976 PF10057 Uncharacterized conserved protein (DUF2294) CB4_00979 PF00005 ABC transporter CB4_00983 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CB4_00983 PF00591 Glycosyl transferase family, a/b domain CB4_00983 PF02885 Glycosyl transferase family, helical bundle domain CB4_00984 PF03060 Nitronate monooxygenase CB4_00985 PF01476 LysM domain CB4_00985 PF03734 L,D-transpeptidase catalytic domain CB4_00986 PF00892 EamA-like transporter family CB4_00987 PF00155 Aminotransferase class I and II CB4_00987 PF00392 Bacterial regulatory proteins, gntR family CB4_00988 PF01593 Flavin containing amine oxidoreductase CB4_00997 PF01476 LysM domain CB4_00997 PF03734 L,D-transpeptidase catalytic domain CB4_00998 PF01551 Peptidase family M23 CB4_00999 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CB4_00999 PF04055 Radical SAM superfamily CB4_01001 PF06265 Protein of unknown function (DUF1027) CB4_01004 PF01934 Protein of unknown function DUF86 CB4_01005 PF08220 DeoR-like helix-turn-helix domain CB4_01005 PF00455 DeoR C terminal sensor domain CB4_01007 PF13411 MerR HTH family regulatory protein CB4_01008 PF00892 EamA-like transporter family CB4_01009 PF01636 Phosphotransferase enzyme family CB4_01011 PF00005 ABC transporter CB4_01012 PF02653 Branched-chain amino acid transport system / permease component CB4_01013 PF00672 HAMP domain CB4_01013 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01013 PF02743 Cache domain CB4_01014 PF13344 Haloacid dehalogenase-like hydrolase CB4_01017 PF04608 Phosphatidylglycerophosphatase A CB4_01019 PF00293 NUDIX domain CB4_01020 PF02743 Cache domain CB4_01020 PF00672 HAMP domain CB4_01020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01022 PF00501 AMP-binding enzyme CB4_01022 PF14535 AMP-binding enzyme C-terminal domain CB4_01023 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CB4_01023 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CB4_01023 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CB4_01024 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CB4_01024 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CB4_01025 PF02803 Thiolase, C-terminal domain CB4_01025 PF00108 Thiolase, N-terminal domain CB4_01026 PF02803 Thiolase, C-terminal domain CB4_01026 PF00108 Thiolase, N-terminal domain CB4_01027 PF02653 Branched-chain amino acid transport system / permease component CB4_01029 PF00005 ABC transporter CB4_01029 PF12399 Branched-chain amino acid ATP-binding cassette transporter CB4_01030 PF00005 ABC transporter CB4_01031 PF13458 Periplasmic binding protein CB4_01032 PF05138 Phenylacetic acid catabolic protein CB4_01035 PF01883 Iron-sulfur cluster assembly protein CB4_01036 PF00171 Aldehyde dehydrogenase family CB4_01037 PF07690 Major Facilitator Superfamily CB4_01038 PF03466 LysR substrate binding domain CB4_01038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_01039 PF01106 NifU-like domain CB4_01040 PF00291 Pyridoxal-phosphate dependent enzyme CB4_01041 PF01053 Cys/Met metabolism PLP-dependent enzyme CB4_01042 PF07315 Protein of unknown function (DUF1462) CB4_01043 PF07293 Protein of unknown function (DUF1450) CB4_01045 PF04055 Radical SAM superfamily CB4_01046 PF01521 Iron-sulphur cluster biosynthesis CB4_01048 PF00360 Phytochrome region CB4_01048 PF00563 EAL domain CB4_01048 PF01590 GAF domain CB4_01048 PF00990 Diguanylate cyclase, GGDEF domain CB4_01049 PF00990 Diguanylate cyclase, GGDEF domain CB4_01049 PF00072 Response regulator receiver domain CB4_01054 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CB4_01054 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CB4_01057 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_01058 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_01060 PF06725 3D domain CB4_01061 PF02681 Divergent PAP2 family CB4_01062 PF00883 Cytosol aminopeptidase family, catalytic domain CB4_01062 PF02789 Cytosol aminopeptidase family, N-terminal domain CB4_01063 PF00156 Phosphoribosyl transferase domain CB4_01064 PF00860 Permease family CB4_01065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CB4_01065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CB4_01065 PF00205 Thiamine pyrophosphate enzyme, central domain CB4_01066 PF10369 Small subunit of acetolactate synthase CB4_01066 PF01842 ACT domain CB4_01067 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CB4_01067 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CB4_01068 PF08502 LeuA allosteric (dimerisation) domain CB4_01068 PF00682 HMGL-like CB4_01069 PF00180 Isocitrate/isopropylmalate dehydrogenase CB4_01072 PF12102 Domain of unknown function (DUF3578) CB4_01072 PF07728 AAA domain (dynein-related subfamily) CB4_01074 PF05343 M42 glutamyl aminopeptidase CB4_01075 PF14098 Small, acid-soluble spore protein I CB4_01076 PF02254 TrkA-N domain CB4_01076 PF02080 TrkA-C domain CB4_01077 PF00588 SpoU rRNA Methylase family CB4_01077 PF08032 RNA 2'-O ribose methyltransferase substrate binding CB4_01079 PF01409 tRNA synthetases class II core domain (F) CB4_01079 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CB4_01080 PF03147 Ferredoxin-fold anticodon binding domain CB4_01080 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CB4_01080 PF01588 Putative tRNA binding domain CB4_01080 PF03483 B3/4 domain CB4_01080 PF03484 tRNA synthetase B5 domain CB4_01082 PF02674 Colicin V production protein CB4_01084 PF01713 Smr domain CB4_01084 PF00488 MutS domain V CB4_01085 PF03994 Domain of Unknown Function (DUF350) CB4_01086 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CB4_01086 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CB4_01086 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CB4_01094 PF13439 Glycosyltransferase Family 4 CB4_01094 PF00534 Glycosyl transferases group 1 CB4_01095 PF03023 Lipid II flippase MurJ CB4_01096 PF16363 GDP-mannose 4,6 dehydratase CB4_01099 PF08359 YsiA-like protein, C-terminal region CB4_01099 PF00440 Bacterial regulatory proteins, tetR family CB4_01100 PF00378 Enoyl-CoA hydratase/isomerase CB4_01101 PF01012 Electron transfer flavoprotein domain CB4_01102 PF01012 Electron transfer flavoprotein domain CB4_01102 PF00766 Electron transfer flavoprotein FAD-binding domain CB4_01103 PF00939 Sodium:sulfate symporter transmembrane region CB4_01104 PF00085 Thioredoxin CB4_01106 PF01541 GIY-YIG catalytic domain CB4_01106 PF02151 UvrB/uvrC motif CB4_01106 PF08459 UvrC Helix-hairpin-helix N-terminal CB4_01107 PF13840 ACT domain CB4_01107 PF00696 Amino acid kinase family CB4_01108 PF02632 BioY family CB4_01109 PF00561 alpha/beta hydrolase fold CB4_01110 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CB4_01111 PF00890 FAD binding domain CB4_01111 PF02910 Fumarate reductase flavoprotein C-term CB4_01112 PF13085 2Fe-2S iron-sulfur cluster binding domain CB4_01112 PF13183 4Fe-4S dicluster domain CB4_01113 PF06968 Biotin and Thiamin Synthesis associated domain CB4_01113 PF04055 Radical SAM superfamily CB4_01114 PF03061 Thioesterase superfamily CB4_01116 PF00196 Bacterial regulatory proteins, luxR family CB4_01118 PF01177 Asp/Glu/Hydantoin racemase CB4_01119 PF10646 Sporulation and spore germination CB4_01120 PF01138 3' exoribonuclease family, domain 1 CB4_01120 PF03725 3' exoribonuclease family, domain 2 CB4_01121 PF01725 Ham1 family CB4_01124 PF05698 Bacterial trigger factor protein (TF) C-terminus CB4_01124 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CB4_01124 PF05697 Bacterial trigger factor protein (TF) CB4_01125 PF00574 Clp protease CB4_01126 PF06689 ClpX C4-type zinc finger CB4_01126 PF07724 AAA domain (Cdc48 subfamily) CB4_01126 PF10431 C-terminal, D2-small domain, of ClpB protein CB4_01127 PF05362 Lon protease (S16) C-terminal proteolytic domain CB4_01127 PF00004 ATPase family associated with various cellular activities (AAA) CB4_01128 PF00004 ATPase family associated with various cellular activities (AAA) CB4_01128 PF02190 ATP-dependent protease La (LON) substrate-binding domain CB4_01128 PF05362 Lon protease (S16) C-terminal proteolytic domain CB4_01129 PF01926 50S ribosome-binding GTPase CB4_01130 PF00892 EamA-like transporter family CB4_01131 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01131 PF00672 HAMP domain CB4_01132 PF02541 Ppx/GppA phosphatase family CB4_01133 PF02503 Polyphosphate kinase middle domain CB4_01133 PF17941 Polyphosphate kinase C-terminal domain 1 CB4_01133 PF13089 Polyphosphate kinase N-terminal domain CB4_01133 PF13090 Polyphosphate kinase C-terminal domain 2 CB4_01134 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CB4_01134 PF01488 Shikimate / quinate 5-dehydrogenase CB4_01134 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CB4_01135 PF01578 Cytochrome C assembly protein CB4_01136 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CB4_01136 PF03900 Porphobilinogen deaminase, C-terminal domain CB4_01138 PF00490 Delta-aminolevulinic acid dehydratase CB4_01139 PF00202 Aminotransferase class-III CB4_01145 PF10458 Valyl tRNA synthetase tRNA binding arm CB4_01145 PF00133 tRNA synthetases class I (I, L, M and V) CB4_01145 PF08264 Anticodon-binding domain of tRNA CB4_01146 PF02875 Mur ligase family, glutamate ligase domain CB4_01146 PF08245 Mur ligase middle domain CB4_01147 PF01225 Mur ligase family, catalytic domain CB4_01147 PF02875 Mur ligase family, glutamate ligase domain CB4_01147 PF08245 Mur ligase middle domain CB4_01148 PF02368 Bacterial Ig-like domain (group 2) CB4_01154 PF00437 Type II/IV secretion system protein CB4_01154 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CB4_01155 PF00437 Type II/IV secretion system protein CB4_01156 PF00482 Type II secretion system (T2SS), protein F CB4_01157 PF07963 Prokaryotic N-terminal methylation motif CB4_01157 PF00114 Pilin (bacterial filament) CB4_01158 PF06750 Bacterial Peptidase A24 N-terminal domain CB4_01158 PF01478 Type IV leader peptidase family CB4_01163 PF02545 Maf-like protein CB4_01164 PF04002 RadC-like JAB domain CB4_01166 PF04085 rod shape-determining protein MreC CB4_01169 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CB4_01170 PF01098 Cell cycle protein CB4_01172 PF02163 Peptidase family M50 CB4_01173 PF00575 S1 RNA binding domain CB4_01173 PF10150 Ribonuclease E/G family CB4_01174 PF00829 Ribosomal prokaryotic L21 protein CB4_01175 PF04327 Cysteine protease Prp CB4_01176 PF01016 Ribosomal L27 protein CB4_01178 PF09269 Domain of unknown function (DUF1967) CB4_01178 PF01018 GTP1/OBG CB4_01178 PF01926 50S ribosome-binding GTPase CB4_01180 PF09335 SNARE associated Golgi protein CB4_01182 PF03447 Homoserine dehydrogenase, NAD binding domain CB4_01182 PF01842 ACT domain CB4_01182 PF00742 Homoserine dehydrogenase CB4_01183 PF00291 Pyridoxal-phosphate dependent enzyme CB4_01184 PF00288 GHMP kinases N terminal domain CB4_01184 PF08544 GHMP kinases C terminal CB4_01185 PF01842 ACT domain CB4_01185 PF00800 Prephenate dehydratase CB4_01187 PF01476 LysM domain CB4_01189 PF01330 RuvA N terminal domain CB4_01189 PF07499 RuvA, C-terminal domain CB4_01190 PF17864 RuvB AAA lid domain CB4_01190 PF05496 Holliday junction DNA helicase RuvB P-loop domain CB4_01190 PF05491 RuvB C-terminal winged helix domain CB4_01191 PF11146 Protein of unknown function (DUF2905) CB4_01192 PF03099 Biotin/lipoate A/B protein ligase family CB4_01193 PF08486 Stage II sporulation protein CB4_01194 PF02547 Queuosine biosynthesis protein CB4_01195 PF01702 Queuine tRNA-ribosyltransferase CB4_01196 PF02699 Preprotein translocase subunit CB4_01197 PF13520 Amino acid permease CB4_01199 PF14667 Polysaccharide biosynthesis C-terminal domain CB4_01199 PF01943 Polysaccharide biosynthesis protein CB4_01201 PF07549 SecD/SecF GG Motif CB4_01201 PF02355 Protein export membrane protein CB4_01202 PF07549 SecD/SecF GG Motif CB4_01202 PF02355 Protein export membrane protein CB4_01203 PF02272 DHHA1 domain CB4_01203 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CB4_01203 PF01368 DHH family CB4_01203 PF17768 RecJ OB domain CB4_01204 PF00156 Phosphoribosyl transferase domain CB4_01205 PF02824 TGS domain CB4_01205 PF04607 Region found in RelA / SpoT proteins CB4_01205 PF13291 ACT domain CB4_01206 PF02580 D-Tyr-tRNA(Tyr) deacylase CB4_01208 PF00672 HAMP domain CB4_01208 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01208 PF02743 Cache domain CB4_01209 PF04055 Radical SAM superfamily CB4_01211 PF03129 Anticodon binding domain CB4_01211 PF13393 Histidyl-tRNA synthetase CB4_01212 PF01336 OB-fold nucleic acid binding domain CB4_01212 PF00152 tRNA synthetases class II (D, K and N) CB4_01212 PF02938 GAD domain CB4_01213 PF00899 ThiF family CB4_01214 PF00004 ATPase family associated with various cellular activities (AAA) CB4_01214 PF16193 AAA C-terminal domain CB4_01214 PF12002 MgsA AAA+ ATPase C terminal CB4_01215 PF02082 Transcriptional regulator CB4_01216 PF00266 Aminotransferase class-V CB4_01221 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01221 PF02743 Cache domain CB4_01221 PF00672 HAMP domain CB4_01223 PF01594 AI-2E family transporter CB4_01224 PF01411 tRNA synthetases class II (A) CB4_01224 PF02272 DHHA1 domain CB4_01224 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CB4_01225 PF06135 IreB regulatory phosphoprotein CB4_01227 PF06949 Protein of unknown function (DUF1292) CB4_01228 PF02618 YceG-like family CB4_01232 PF03717 Penicillin-binding Protein dimerisation domain CB4_01232 PF00905 Penicillin binding protein transpeptidase domain CB4_01233 PF01569 PAP2 superfamily CB4_01235 PF07075 Protein of unknown function (DUF1343) CB4_01237 PF05816 Toxic anion resistance protein (TelA) CB4_01244 PF00150 Cellulase (glycosyl hydrolase family 5) CB4_01244 PF03424 Carbohydrate binding domain (family 17/28) CB4_01244 PF00395 S-layer homology domain CB4_01245 PF00535 Glycosyl transferase family 2 CB4_01247 PF00486 Transcriptional regulatory protein, C terminal CB4_01247 PF00072 Response regulator receiver domain CB4_01248 PF18719 ArlS sensor domain CB4_01248 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01248 PF00512 His Kinase A (phospho-acceptor) domain CB4_01251 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CB4_01251 PF04101 Glycosyltransferase family 28 C-terminal domain CB4_01252 PF01522 Polysaccharide deacetylase CB4_01252 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CB4_01254 PF01906 Putative heavy-metal-binding CB4_01255 PF03698 Uncharacterised protein family (UPF0180) CB4_01257 PF01966 HD domain CB4_01257 PF11871 Domain of unknown function (DUF3391) CB4_01259 PF04545 Sigma-70, region 4 CB4_01259 PF04542 Sigma-70 region 2 CB4_01260 PF13193 AMP-binding enzyme C-terminal domain CB4_01260 PF00501 AMP-binding enzyme CB4_01261 PF00106 short chain dehydrogenase CB4_01262 PF13784 Fic/DOC family N-terminal CB4_01262 PF02661 Fic/DOC family CB4_01267 PF04542 Sigma-70 region 2 CB4_01267 PF04545 Sigma-70, region 4 CB4_01270 PF04286 Protein of unknown function (DUF445) CB4_01271 PF04286 Protein of unknown function (DUF445) CB4_01273 PF04542 Sigma-70 region 2 CB4_01273 PF04545 Sigma-70, region 4 CB4_01276 PF09547 Stage IV sporulation protein A (spore_IV_A) CB4_01279 PF04545 Sigma-70, region 4 CB4_01279 PF04542 Sigma-70 region 2 CB4_01282 PF00313 'Cold-shock' DNA-binding domain CB4_01286 PF00206 Lyase CB4_01286 PF10415 Fumarase C C-terminus CB4_01287 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_01290 PF01208 Uroporphyrinogen decarboxylase (URO-D) CB4_01291 PF02557 D-alanyl-D-alanine carboxypeptidase CB4_01292 PF04029 2-phosphosulpholactate phosphatase CB4_01294 PF01476 LysM domain CB4_01294 PF00246 Zinc carboxypeptidase CB4_01295 PF01925 Sulfite exporter TauE/SafE CB4_01296 PF03600 Citrate transporter CB4_01298 PF17202 Single cache domain 3 CB4_01298 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01298 PF00672 HAMP domain CB4_01301 PF10502 Signal peptidase, peptidase S26 CB4_01304 PF00676 Dehydrogenase E1 component CB4_01305 PF02780 Transketolase, C-terminal domain CB4_01305 PF02779 Transketolase, pyrimidine binding domain CB4_01306 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CB4_01306 PF02817 e3 binding domain CB4_01306 PF00364 Biotin-requiring enzyme CB4_01307 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_01307 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CB4_01308 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01309 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CB4_01309 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CB4_01309 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CB4_01312 PF01926 50S ribosome-binding GTPase CB4_01313 PF01488 Shikimate / quinate 5-dehydrogenase CB4_01313 PF08501 Shikimate dehydrogenase substrate binding domain CB4_01313 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CB4_01314 PF01985 CRS1 / YhbY (CRM) domain CB4_01315 PF01467 Cytidylyltransferase-like CB4_01316 PF01966 HD domain CB4_01318 PF13649 Methyltransferase domain CB4_01321 PF03807 NADP oxidoreductase coenzyme F420-dependent CB4_01321 PF14748 Pyrroline-5-carboxylate reductase dimerisation CB4_01322 PF10752 Protein of unknown function (DUF2533) CB4_01325 PF01053 Cys/Met metabolism PLP-dependent enzyme CB4_01329 PF00753 Metallo-beta-lactamase superfamily CB4_01329 PF03772 Competence protein CB4_01329 PF13567 Domain of unknown function (DUF4131) CB4_01330 PF08281 Sigma-70, region 4 CB4_01330 PF04542 Sigma-70 region 2 CB4_01332 PF06144 DNA polymerase III, delta subunit CB4_01333 PF01649 Ribosomal protein S20 CB4_01334 PF03418 Germination protease CB4_01335 PF07454 Stage II sporulation protein P (SpoIIP) CB4_01336 PF12438 Protein of unknown function (DUF3679) CB4_01337 PF00557 Metallopeptidase family M24 CB4_01337 PF01321 Creatinase/Prolidase N-terminal domain CB4_01339 PF00009 Elongation factor Tu GTP binding domain CB4_01339 PF00679 Elongation factor G C-terminus CB4_01339 PF06421 GTP-binding protein LepA C-terminus CB4_01339 PF03144 Elongation factor Tu domain 2 CB4_01340 PF06969 HemN C-terminal domain CB4_01340 PF04055 Radical SAM superfamily CB4_01341 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CB4_01341 PF01628 HrcA protein C terminal domain CB4_01342 PF00118 TCP-1/cpn60 chaperonin family CB4_01343 PF01025 GrpE CB4_01344 PF00012 Hsp70 protein CB4_01345 PF00684 DnaJ central domain CB4_01345 PF01556 DnaJ C terminal domain CB4_01345 PF00226 DnaJ domain CB4_01347 PF04452 RNA methyltransferase CB4_01348 PF04055 Radical SAM superfamily CB4_01348 PF00919 Uncharacterized protein family UPF0004 CB4_01348 PF01938 TRAM domain CB4_01349 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CB4_01349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01349 PF17203 Single cache domain 3 CB4_01349 PF00989 PAS fold CB4_01350 PF00072 Response regulator receiver domain CB4_01351 PF00375 Sodium:dicarboxylate symporter family CB4_01352 PF03480 Bacterial extracellular solute-binding protein, family 7 CB4_01353 PF00293 NUDIX domain CB4_01354 PF01791 DeoC/LacD family aldolase CB4_01355 PF03793 PASTA domain CB4_01355 PF00069 Protein kinase domain CB4_01380 PF01609 Transposase DDE domain CB4_01397 PF02690 Na+/Pi-cotransporter CB4_01400 PF00990 Diguanylate cyclase, GGDEF domain CB4_01400 PF03707 Bacterial signalling protein N terminal repeat CB4_01400 PF00563 EAL domain CB4_01405 PF03060 Nitronate monooxygenase CB4_01406 PF00672 HAMP domain CB4_01406 PF05227 CHASE3 domain CB4_01406 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01407 PF00464 Serine hydroxymethyltransferase CB4_01408 PF00155 Aminotransferase class I and II CB4_01408 PF00392 Bacterial regulatory proteins, gntR family CB4_01410 PF07552 Spore Coat Protein X and V domain CB4_01413 PF00313 'Cold-shock' DNA-binding domain CB4_01414 PF04286 Protein of unknown function (DUF445) CB4_01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01416 PF08664 YcbB domain CB4_01416 PF00072 Response regulator receiver domain CB4_01417 PF07478 D-ala D-ala ligase C-terminus CB4_01417 PF01820 D-ala D-ala ligase N-terminus CB4_01418 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_01418 PF03466 LysR substrate binding domain CB4_01420 PF04134 Protein of unknown function, DUF393 CB4_01421 PF08245 Mur ligase middle domain CB4_01421 PF02875 Mur ligase family, glutamate ligase domain CB4_01421 PF01225 Mur ligase family, catalytic domain CB4_01423 PF09424 Yqey-like protein CB4_01426 PF07873 YabP family CB4_01427 PF06898 Putative stage IV sporulation protein YqfD CB4_01428 PF02562 PhoH-like protein CB4_01429 PF01966 HD domain CB4_01429 PF07698 7TM receptor with intracellular HD hydrolase CB4_01429 PF07697 7TM-HD extracellular CB4_01430 PF02130 Uncharacterized protein family UPF0054 CB4_01431 PF01219 Prokaryotic diacylglycerol kinase CB4_01432 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CB4_01433 PF01926 50S ribosome-binding GTPase CB4_01433 PF07650 KH domain CB4_01435 PF02565 Recombination protein O C terminal CB4_01435 PF11967 Recombination protein O N terminal CB4_01436 PF02091 Glycyl-tRNA synthetase alpha subunit CB4_01437 PF02092 Glycyl-tRNA synthetase beta subunit CB4_01437 PF05746 DALR anticodon binding domain CB4_01438 PF08279 HTH domain CB4_01438 PF00571 CBS domain CB4_01439 PF03618 Kinase/pyrophosphorylase CB4_01440 PF01807 CHC2 zinc finger CB4_01440 PF08275 DNA primase catalytic core, N-terminal domain CB4_01440 PF10410 DnaB-helicase binding domain of primase CB4_01441 PF04545 Sigma-70, region 4 CB4_01441 PF03979 Sigma-70 factor, region 1.1 CB4_01441 PF04539 Sigma-70 region 3 CB4_01441 PF00140 Sigma-70 factor, region 1.2 CB4_01441 PF04542 Sigma-70 region 2 CB4_01443 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_01443 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_01443 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_01444 PF13193 AMP-binding enzyme C-terminal domain CB4_01444 PF00501 AMP-binding enzyme CB4_01446 PF04816 tRNA (adenine(22)-N(1))-methyltransferase CB4_01447 PF01784 NIF3 (NGG1p interacting factor 3) CB4_01450 PF09587 Bacterial capsule synthesis protein PGA_cap CB4_01451 PF00497 Bacterial extracellular solute-binding proteins, family 3 CB4_01453 PF01523 Putative modulator of DNA gyrase CB4_01454 PF01523 Putative modulator of DNA gyrase CB4_01455 PF01541 GIY-YIG catalytic domain CB4_01466 PF00324 Amino acid permease CB4_01468 PF00392 Bacterial regulatory proteins, gntR family CB4_01468 PF00155 Aminotransferase class I and II CB4_01469 PF03060 Nitronate monooxygenase CB4_01472 PF01891 Cobalt uptake substrate-specific transmembrane region CB4_01473 PF02553 Cobalt transport protein component CbiN CB4_01474 PF02361 Cobalt transport protein CB4_01475 PF00005 ABC transporter CB4_01480 PF07683 Cobalamin synthesis protein cobW C-terminal domain CB4_01480 PF02492 CobW/HypB/UreG, nucleotide-binding domain CB4_01482 PF03773 Predicted permease CB4_01483 PF00186 Dihydrofolate reductase CB4_01484 PF00210 Ferritin-like domain CB4_01485 PF00085 Thioredoxin CB4_01486 PF03009 Glycerophosphoryl diester phosphodiesterase family CB4_01489 PF00909 Ammonium Transporter Family CB4_01490 PF01638 HxlR-like helix-turn-helix CB4_01491 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_01493 PF03976 Polyphosphate kinase 2 (PPK2) CB4_01494 PF00350 Dynamin family CB4_01496 PF05525 Branched-chain amino acid transport protein CB4_01499 PF00082 Subtilase family CB4_01500 PF13193 AMP-binding enzyme C-terminal domain CB4_01500 PF00501 AMP-binding enzyme CB4_01501 PF14480 DNA polymerase III polC-type N-terminus I CB4_01501 PF02811 PHP domain CB4_01501 PF14579 Helix-hairpin-helix motif CB4_01501 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CB4_01501 PF00929 Exonuclease CB4_01501 PF07733 Bacterial DNA polymerase III alpha NTPase domain CB4_01501 PF11490 DNA polymerase III polC-type N-terminus II CB4_01502 PF00005 ABC transporter CB4_01503 PF00528 Binding-protein-dependent transport system inner membrane component CB4_01504 PF09084 NMT1/THI5 like CB4_01505 PF08543 Phosphomethylpyrimidine kinase CB4_01508 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01508 PF00672 HAMP domain CB4_01508 PF02743 Cache domain CB4_01509 PF01209 ubiE/COQ5 methyltransferase family CB4_01510 PF03061 Thioesterase superfamily CB4_01512 PF03649 Uncharacterised protein family (UPF0014) CB4_01513 PF00005 ABC transporter CB4_01514 PF01694 Rhomboid family CB4_01515 PF05681 Fumarate hydratase (Fumerase) CB4_01515 PF05683 Fumarase C-terminus CB4_01516 PF00795 Carbon-nitrogen hydrolase CB4_01519 PF05343 M42 glutamyl aminopeptidase CB4_01522 PF13193 AMP-binding enzyme C-terminal domain CB4_01522 PF00501 AMP-binding enzyme CB4_01524 PF01699 Sodium/calcium exchanger protein CB4_01525 PF01471 Putative peptidoglycan binding domain CB4_01525 PF07486 Cell Wall Hydrolase CB4_01526 PF01022 Bacterial regulatory protein, arsR family CB4_01527 PF03780 Asp23 family, cell envelope-related function CB4_01530 PF03061 Thioesterase superfamily CB4_01533 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) CB4_01534 PF01966 HD domain CB4_01535 PF00582 Universal stress protein family CB4_01537 PF00437 Type II/IV secretion system protein CB4_01539 PF07963 Prokaryotic N-terminal methylation motif CB4_01539 PF08334 Type II secretion system (T2SS), protein G CB4_01544 PF01202 Shikimate kinase CB4_01545 PF14038 YqzE-like protein CB4_01547 PF00271 Helicase conserved C-terminal domain CB4_01547 PF00176 SNF2 family N-terminal domain CB4_01548 PF07885 Ion channel CB4_01551 PF01571 Aminomethyltransferase folate-binding domain CB4_01551 PF08669 Glycine cleavage T-protein C-terminal barrel domain CB4_01552 PF02347 Glycine cleavage system P-protein CB4_01553 PF02347 Glycine cleavage system P-protein CB4_01554 PF01258 Prokaryotic dksA/traR C4-type zinc finger CB4_01555 PF03099 Biotin/lipoate A/B protein ligase family CB4_01557 PF00317 Ribonucleotide reductase, all-alpha domain CB4_01557 PF02867 Ribonucleotide reductase, barrel domain CB4_01557 PF03477 ATP cone domain CB4_01558 PF06039 Malate:quinone oxidoreductase (Mqo) CB4_01561 PF08274 PhnA Zinc-Ribbon CB4_01561 PF03831 PhnA domain CB4_01562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01562 PF06580 Histidine kinase CB4_01564 PF00561 alpha/beta hydrolase fold CB4_01565 PF17202 Single cache domain 3 CB4_01565 PF00672 HAMP domain CB4_01565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01566 PF00528 Binding-protein-dependent transport system inner membrane component CB4_01568 PF01565 FAD binding domain CB4_01568 PF02913 FAD linked oxidases, C-terminal domain CB4_01569 PF13183 4Fe-4S dicluster domain CB4_01569 PF02754 Cysteine-rich domain CB4_01570 PF13411 MerR HTH family regulatory protein CB4_01577 PF13180 PDZ domain CB4_01577 PF17820 PDZ domain CB4_01579 PF04461 Protein of unknown function (DUF520) CB4_01580 PF02742 Iron dependent repressor, metal binding and dimerisation domain CB4_01580 PF01325 Iron dependent repressor, N-terminal DNA binding domain CB4_01581 PF01734 Patatin-like phospholipase CB4_01583 PF07136 Protein of unknown function (DUF1385) CB4_01584 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CB4_01585 PF01220 Dehydroquinase class II CB4_01586 PF00557 Metallopeptidase family M24 CB4_01586 PF01321 Creatinase/Prolidase N-terminal domain CB4_01587 PF01132 Elongation factor P (EF-P) OB domain CB4_01587 PF09285 Elongation factor P, C-terminal CB4_01587 PF08207 Elongation factor P (EF-P) KOW-like domain CB4_01588 PF17202 Single cache domain 3 CB4_01588 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01588 PF00672 HAMP domain CB4_01591 PF06686 Stage III sporulation protein AC/AD protein family CB4_01592 PF06686 Stage III sporulation protein AC/AD protein family CB4_01593 PF09546 Stage III sporulation protein AE (spore_III_AE) CB4_01594 PF09581 Stage III sporulation protein AF (Spore_III_AF) CB4_01596 PF12685 SpoIIIAH-like protein CB4_01597 PF00364 Biotin-requiring enzyme CB4_01598 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CB4_01598 PF00289 Biotin carboxylase, N-terminal domain CB4_01598 PF02785 Biotin carboxylase C-terminal domain CB4_01599 PF03780 Asp23 family, cell envelope-related function CB4_01602 PF01029 NusB family CB4_01603 PF00814 Glycoprotease family CB4_01604 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CB4_01604 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CB4_01605 PF13742 OB-fold nucleic acid binding domain CB4_01605 PF02601 Exonuclease VII, large subunit CB4_01606 PF02609 Exonuclease VII small subunit CB4_01607 PF00348 Polyprenyl synthetase CB4_01608 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CB4_01608 PF02779 Transketolase, pyrimidine binding domain CB4_01608 PF02780 Transketolase, C-terminal domain CB4_01609 PF01728 FtsJ-like methyltransferase CB4_01609 PF01479 S4 domain CB4_01610 PF01513 ATP-NAD kinase CB4_01611 PF01316 Arginine repressor, DNA binding domain CB4_01611 PF02863 Arginine repressor, C-terminal domain CB4_01612 PF02463 RecF/RecN/SMC N terminal domain CB4_01613 PF05580 SpoIVB peptidase S55 CB4_01613 PF17820 PDZ domain CB4_01614 PF00072 Response regulator receiver domain CB4_01614 PF08769 Sporulation initiation factor Spo0A C terminal CB4_01617 PF02811 PHP domain CB4_01619 PF04608 Phosphatidylglycerophosphatase A CB4_01627 PF01276 Orn/Lys/Arg decarboxylase, major domain CB4_01627 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CB4_01628 PF03060 Nitronate monooxygenase CB4_01629 PF06335 Protein of unknown function (DUF1054) CB4_01631 PF00883 Cytosol aminopeptidase family, catalytic domain CB4_01631 PF02789 Cytosol aminopeptidase family, N-terminal domain CB4_01633 PF02675 S-adenosylmethionine decarboxylase CB4_01635 PF02954 Bacterial regulatory protein, Fis family CB4_01635 PF00989 PAS fold CB4_01635 PF00158 Sigma-54 interaction domain CB4_01639 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CB4_01640 PF02562 PhoH-like protein CB4_01640 PF13638 PIN domain CB4_01641 PF00753 Metallo-beta-lactamase superfamily CB4_01642 PF00990 Diguanylate cyclase, GGDEF domain CB4_01642 PF00072 Response regulator receiver domain CB4_01645 PF03960 ArsC family CB4_01646 PF01367 5'-3' exonuclease, C-terminal SAM fold CB4_01646 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CB4_01647 PF00378 Enoyl-CoA hydratase/isomerase CB4_01649 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CB4_01649 PF02785 Biotin carboxylase C-terminal domain CB4_01649 PF00289 Biotin carboxylase, N-terminal domain CB4_01650 PF00364 Biotin-requiring enzyme CB4_01651 PF00682 HMGL-like CB4_01652 PF01039 Carboxyl transferase domain CB4_01653 PF00440 Bacterial regulatory proteins, tetR family CB4_01653 PF08359 YsiA-like protein, C-terminal region CB4_01654 PF10079 Bacillithiol biosynthesis BshC CB4_01655 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CB4_01655 PF05221 S-adenosyl-L-homocysteine hydrolase CB4_01656 PF01795 MraW methylase family CB4_01659 PF03717 Penicillin-binding Protein dimerisation domain CB4_01659 PF00905 Penicillin binding protein transpeptidase domain CB4_01659 PF03793 PASTA domain CB4_01660 PF02875 Mur ligase family, glutamate ligase domain CB4_01660 PF08245 Mur ligase middle domain CB4_01660 PF01225 Mur ligase family, catalytic domain CB4_01661 PF00953 Glycosyl transferase family 4 CB4_01662 PF02875 Mur ligase family, glutamate ligase domain CB4_01662 PF08245 Mur ligase middle domain CB4_01663 PF01098 Cell cycle protein CB4_01664 PF04101 Glycosyltransferase family 28 C-terminal domain CB4_01664 PF03033 Glycosyltransferase family 28 N-terminal domain CB4_01665 PF01565 FAD binding domain CB4_01665 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CB4_01666 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CB4_01667 PF03799 Cell division protein FtsQ CB4_01667 PF08478 POTRA domain, FtsQ-type CB4_01668 PF05949 Bacterial protein of unknown function (DUF881) CB4_01670 PF06947 Protein of unknown function (DUF1290) CB4_01671 PF02491 SHS2 domain inserted in FTSA CB4_01672 PF00091 Tubulin/FtsZ family, GTPase domain CB4_01672 PF12327 FtsZ family, C-terminal domain CB4_01673 PF09997 Predicted membrane protein (DUF2238) CB4_01674 PF03419 Sporulation factor SpoIIGA CB4_01675 PF04545 Sigma-70, region 4 CB4_01675 PF04542 Sigma-70 region 2 CB4_01676 PF04542 Sigma-70 region 2 CB4_01676 PF04539 Sigma-70 region 3 CB4_01676 PF04545 Sigma-70, region 4 CB4_01677 PF00497 Bacterial extracellular solute-binding proteins, family 3 CB4_01678 PF05239 PRC-barrel domain CB4_01680 PF01168 Alanine racemase, N-terminal domain CB4_01681 PF04472 Cell division protein SepF CB4_01682 PF02325 YGGT family CB4_01683 PF01479 S4 domain CB4_01683 PF17774 Putative RNA-binding domain in YlmH CB4_01684 PF05103 DivIVA protein CB4_01685 PF00133 tRNA synthetases class I (I, L, M and V) CB4_01685 PF08264 Anticodon-binding domain of tRNA CB4_01686 PF01252 Signal peptidase (SPase) II CB4_01687 PF00849 RNA pseudouridylate synthase CB4_01687 PF01479 S4 domain CB4_01688 PF00156 Phosphoribosyl transferase domain CB4_01689 PF00860 Permease family CB4_01690 PF01979 Amidohydrolase family CB4_01691 PF00117 Glutamine amidotransferase class-I CB4_01691 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CB4_01692 PF02142 MGS-like domain CB4_01692 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CB4_01692 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CB4_01693 PF00970 Oxidoreductase FAD-binding domain CB4_01693 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CB4_01694 PF01180 Dihydroorotate dehydrogenase CB4_01695 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CB4_01696 PF00156 Phosphoribosyl transferase domain CB4_01699 PF14667 Polysaccharide biosynthesis C-terminal domain CB4_01699 PF01943 Polysaccharide biosynthesis protein CB4_01702 PF00689 Cation transporting ATPase, C-terminus CB4_01702 PF00690 Cation transporter/ATPase, N-terminus CB4_01703 PF01678 Diaminopimelate epimerase CB4_01704 PF08340 Domain of unknown function (DUF1732) CB4_01704 PF03755 YicC-like family, N-terminal region CB4_01705 PF04025 Domain of unknown function (DUF370) CB4_01706 PF00625 Guanylate kinase CB4_01707 PF01192 RNA polymerase Rpb6 CB4_01708 PF04127 DNA / pantothenate metabolism flavoprotein CB4_01708 PF02441 Flavoprotein CB4_01709 PF04851 Type III restriction enzyme, res subunit CB4_01709 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CB4_01709 PF18074 Primosomal protein N C-terminal domain CB4_01709 PF17764 3′ DNA-binding domain (3′BD) CB4_01709 PF00271 Helicase conserved C-terminal domain CB4_01710 PF01327 Polypeptide deformylase CB4_01711 PF02911 Formyl transferase, C-terminal domain CB4_01711 PF00551 Formyl transferase CB4_01712 PF01029 NusB family CB4_01712 PF01189 16S rRNA methyltransferase RsmB/F CB4_01713 PF04055 Radical SAM superfamily CB4_01715 PF03793 PASTA domain CB4_01715 PF00069 Protein kinase domain CB4_01716 PF16745 RsgA N-terminal domain CB4_01716 PF03193 RsgA GTPase CB4_01717 PF00834 Ribulose-phosphate 3 epimerase family CB4_01718 PF00830 Ribosomal L28 family CB4_01719 PF03780 Asp23 family, cell envelope-related function CB4_01720 PF13684 Dihydroxyacetone kinase family CB4_01720 PF02734 DAK2 domain CB4_01721 PF02645 Uncharacterised protein, DegV family COG1307 CB4_01722 PF00271 Helicase conserved C-terminal domain CB4_01722 PF17191 RecG wedge domain CB4_01722 PF00270 DEAD/DEAH box helicase CB4_01723 PF02308 MgtC family CB4_01726 PF01467 Cytidylyltransferase-like CB4_01727 PF07670 Nucleoside recognition CB4_01728 PF01734 Patatin-like phospholipase CB4_01729 PF05362 Lon protease (S16) C-terminal proteolytic domain CB4_01729 PF13180 PDZ domain CB4_01730 PF05636 HIGH Nucleotidyl Transferase CB4_01732 PF01783 Ribosomal L32p protein family CB4_01733 PF03061 Thioesterase superfamily CB4_01734 PF02504 Fatty acid synthesis protein CB4_01735 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CB4_01735 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CB4_01736 PF00698 Acyl transferase domain CB4_01738 PF00550 Phosphopantetheine attachment site CB4_01739 PF00109 Beta-ketoacyl synthase, N-terminal domain CB4_01739 PF02801 Beta-ketoacyl synthase, C-terminal domain CB4_01740 PF14622 Ribonuclease-III-like CB4_01740 PF00035 Double-stranded RNA binding motif CB4_01742 PF06470 SMC proteins Flexible Hinge Domain CB4_01742 PF02463 RecF/RecN/SMC N terminal domain CB4_01743 PF00448 SRP54-type protein, GTPase domain CB4_01743 PF02881 SRP54-type protein, helical bundle domain CB4_01744 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CB4_01745 PF02978 Signal peptide binding domain CB4_01745 PF02881 SRP54-type protein, helical bundle domain CB4_01745 PF00448 SRP54-type protein, GTPase domain CB4_01746 PF00886 Ribosomal protein S16 CB4_01749 PF01782 RimM N-terminal domain CB4_01749 PF05239 PRC-barrel domain CB4_01750 PF01746 tRNA (Guanine-1)-methyltransferase CB4_01751 PF01245 Ribosomal protein L19 CB4_01752 PF10502 Signal peptidase, peptidase S26 CB4_01753 PF01926 50S ribosome-binding GTPase CB4_01754 PF01351 Ribonuclease HII CB4_01756 PF01312 FlhB HrpN YscU SpaS Family CB4_01757 PF02021 Uncharacterised protein family UPF0102 CB4_01758 PF01078 Magnesium chelatase, subunit ChlI CB4_01758 PF13335 Magnesium chelatase, subunit ChlI C-terminal CB4_01759 PF00239 Resolvase, N terminal domain CB4_01759 PF02796 Helix-turn-helix domain of resolvase CB4_01766 PF01381 Helix-turn-helix CB4_01782 PF01695 IstB-like ATP binding protein CB4_01784 PF05866 Endodeoxyribonuclease RusA CB4_01800 PF00574 Clp protease CB4_01819 PF01520 N-acetylmuramoyl-L-alanine amidase CB4_01819 PF05036 Sporulation related domain CB4_01826 PF01078 Magnesium chelatase, subunit ChlI CB4_01826 PF13335 Magnesium chelatase, subunit ChlI C-terminal CB4_01827 PF08970 Sporulation inhibitor A CB4_01828 PF00549 CoA-ligase CB4_01828 PF08442 ATP-grasp domain CB4_01829 PF00549 CoA-ligase CB4_01829 PF02629 CoA binding domain CB4_01830 PF02481 DNA recombination-mediator protein A CB4_01831 PF01131 DNA topoisomerase CB4_01831 PF01396 Topoisomerase DNA binding C4 zinc finger CB4_01831 PF01751 Toprim domain CB4_01832 PF01134 Glucose inhibited division protein A CB4_01833 PF02899 Phage integrase, N-terminal SAM-like domain CB4_01833 PF00589 Phage integrase family CB4_01834 PF00227 Proteasome subunit CB4_01835 PF07724 AAA domain (Cdc48 subfamily) CB4_01835 PF10431 C-terminal, D2-small domain, of ClpB protein CB4_01836 PF06018 CodY GAF-like domain CB4_01836 PF08222 CodY helix-turn-helix domain CB4_01837 PF00460 Flagella basal body rod protein CB4_01838 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CB4_01838 PF00460 Flagella basal body rod protein CB4_01839 PF02049 Flagellar hook-basal body complex protein FliE CB4_01840 PF08345 Flagellar M-ring protein C-terminal CB4_01840 PF01514 Secretory protein of YscJ/FliF family CB4_01841 PF14841 FliG middle domain CB4_01841 PF01706 FliG C-terminal domain CB4_01841 PF14842 FliG N-terminal domain CB4_01842 PF02108 Flagellar assembly protein FliH CB4_01843 PF02874 ATP synthase alpha/beta family, beta-barrel domain CB4_01843 PF18269 T3SS EscN ATPase C-terminal domain CB4_01843 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CB4_01846 PF02120 Flagellar hook-length control protein FliK CB4_01847 PF03963 Flagellar hook capping protein - N-terminal region CB4_01849 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CB4_01849 PF00460 Flagella basal body rod protein CB4_01852 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CB4_01852 PF02154 Flagellar motor switch protein FliM CB4_01853 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CB4_01853 PF04509 CheC-like family CB4_01854 PF00072 Response regulator receiver domain CB4_01855 PF04347 Flagellar biosynthesis protein, FliO CB4_01856 PF00813 FliP family CB4_01857 PF01313 Bacterial export proteins, family 3 CB4_01858 PF01311 Bacterial export proteins, family 1 CB4_01859 PF01312 FlhB HrpN YscU SpaS Family CB4_01860 PF00771 FHIPEP family CB4_01861 PF00448 SRP54-type protein, GTPase domain CB4_01862 PF10609 NUBPL iron-transfer P-loop NTPase CB4_01863 PF01339 CheB methylesterase CB4_01863 PF00072 Response regulator receiver domain CB4_01864 PF00072 Response regulator receiver domain CB4_01864 PF01339 CheB methylesterase CB4_01865 PF01584 CheW-like domain CB4_01865 PF02895 Signal transducing histidine kinase, homodimeric domain CB4_01865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01865 PF01627 Hpt domain CB4_01865 PF07194 P2 response regulator binding domain CB4_01866 PF01584 CheW-like domain CB4_01867 PF04509 CheC-like family CB4_01868 PF03975 CheD chemotactic sensory transduction CB4_01870 PF04545 Sigma-70, region 4 CB4_01870 PF04539 Sigma-70 region 3 CB4_01870 PF04542 Sigma-70 region 2 CB4_01874 PF00318 Ribosomal protein S2 CB4_01875 PF00889 Elongation factor TS CB4_01876 PF00696 Amino acid kinase family CB4_01877 PF01765 Ribosome recycling factor CB4_01878 PF01255 Putative undecaprenyl diphosphate synthase CB4_01880 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CB4_01880 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CB4_01880 PF13288 DXP reductoisomerase C-terminal domain CB4_01881 PF17820 PDZ domain CB4_01881 PF02163 Peptidase family M50 CB4_01882 PF03129 Anticodon binding domain CB4_01882 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CB4_01882 PF04073 Aminoacyl-tRNA editing domain CB4_01883 PF00929 Exonuclease CB4_01883 PF02811 PHP domain CB4_01883 PF14579 Helix-hairpin-helix motif CB4_01883 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CB4_01883 PF14480 DNA polymerase III polC-type N-terminus I CB4_01883 PF11490 DNA polymerase III polC-type N-terminus II CB4_01883 PF07733 Bacterial DNA polymerase III alpha NTPase domain CB4_01884 PF17384 RimP C-terminal SH3 domain CB4_01884 PF02576 RimP N-terminal domain CB4_01885 PF13184 NusA-like KH domain CB4_01885 PF08529 NusA N-terminal domain CB4_01885 PF00575 S1 RNA binding domain CB4_01886 PF04296 Protein of unknown function (DUF448) CB4_01887 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CB4_01888 PF11987 Translation-initiation factor 2 CB4_01888 PF04760 Translation initiation factor IF-2, N-terminal region CB4_01888 PF00009 Elongation factor Tu GTP binding domain CB4_01889 PF02033 Ribosome-binding factor A CB4_01890 PF02272 DHHA1 domain CB4_01890 PF01368 DHH family CB4_01891 PF16198 tRNA pseudouridylate synthase B C-terminal domain CB4_01891 PF01509 TruB family pseudouridylate synthase (N terminal domain) CB4_01892 PF06574 FAD synthetase CB4_01892 PF01687 Riboflavin kinase CB4_01893 PF00312 Ribosomal protein S15 CB4_01894 PF00013 KH domain CB4_01894 PF00575 S1 RNA binding domain CB4_01894 PF03725 3' exoribonuclease family, domain 2 CB4_01894 PF01138 3' exoribonuclease family, domain 1 CB4_01894 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CB4_01895 PF01522 Polysaccharide deacetylase CB4_01896 PF05193 Peptidase M16 inactive domain CB4_01896 PF00675 Insulinase (Peptidase family M16) CB4_01897 PF00692 dUTPase CB4_01899 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CB4_01899 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CB4_01901 PF01370 NAD dependent epimerase/dehydratase family CB4_01907 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CB4_01907 PF16924 Dipicolinate synthase subunit A N-terminal domain CB4_01908 PF02441 Flavoprotein CB4_01909 PF02774 Semialdehyde dehydrogenase, dimerisation domain CB4_01909 PF01118 Semialdehyde dehydrogenase, NAD binding domain CB4_01910 PF13840 ACT domain CB4_01910 PF00696 Amino acid kinase family CB4_01911 PF00701 Dihydrodipicolinate synthetase family CB4_01912 PF17770 Ribonuclease J C-terminal domain CB4_01912 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CB4_01912 PF00753 Metallo-beta-lactamase superfamily CB4_01913 PF01385 Probable transposase CB4_01913 PF12323 Helix-turn-helix domain CB4_01913 PF07282 Putative transposase DNA-binding domain CB4_01915 PF01872 RibD C-terminal domain CB4_01918 PF13243 Squalene-hopene cyclase C-terminal domain CB4_01918 PF13249 Squalene-hopene cyclase N-terminal domain CB4_01927 PF13358 DDE superfamily endonuclease CB4_01929 PF00667 FAD binding domain CB4_01929 PF00258 Flavodoxin CB4_01929 PF00175 Oxidoreductase NAD-binding domain CB4_01931 PF00440 Bacterial regulatory proteins, tetR family CB4_01938 PF13087 AAA domain CB4_01938 PF13086 AAA domain CB4_01938 PF13087 AAA domain CB4_01938 PF13086 AAA domain CB4_01938 PF13195 Protein of unknown function (DUF4011) CB4_01938 PF13195 Protein of unknown function (DUF4011) CB4_01940 PF01588 Putative tRNA binding domain CB4_01941 PF03358 NADPH-dependent FMN reductase CB4_01942 PF00561 alpha/beta hydrolase fold CB4_01945 PF00072 Response regulator receiver domain CB4_01945 PF00196 Bacterial regulatory proteins, luxR family CB4_01946 PF01425 Amidase CB4_01950 PF07690 Major Facilitator Superfamily CB4_01952 PF00109 Beta-ketoacyl synthase, N-terminal domain CB4_01952 PF02801 Beta-ketoacyl synthase, C-terminal domain CB4_01953 PF00512 His Kinase A (phospho-acceptor) domain CB4_01953 PF00989 PAS fold CB4_01953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01953 PF08447 PAS fold CB4_01954 PF01061 ABC-2 type transporter CB4_01956 PF03006 Haemolysin-III related CB4_01961 PF01380 SIS domain CB4_01962 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_01963 PF06271 RDD family CB4_01966 PF01098 Cell cycle protein CB4_01967 PF01709 Transcriptional regulator CB4_01969 PF00877 NlpC/P60 family CB4_01969 PF01476 LysM domain CB4_01970 PF01925 Sulfite exporter TauE/SafE CB4_01971 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CB4_01972 PF02082 Transcriptional regulator CB4_01974 PF00155 Aminotransferase class I and II CB4_01975 PF00155 Aminotransferase class I and II CB4_01975 PF00392 Bacterial regulatory proteins, gntR family CB4_01977 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CB4_01978 PF01323 DSBA-like thioredoxin domain CB4_01979 PF01435 Peptidase family M48 CB4_01980 PF02867 Ribonucleotide reductase, barrel domain CB4_01980 PF00317 Ribonucleotide reductase, all-alpha domain CB4_01980 PF03477 ATP cone domain CB4_01982 PF03477 ATP cone domain CB4_01982 PF02867 Ribonucleotide reductase, barrel domain CB4_01982 PF00317 Ribonucleotide reductase, all-alpha domain CB4_01983 PF00268 Ribonucleotide reductase, small chain CB4_01984 PF04012 PspA/IM30 family CB4_01987 PF00501 AMP-binding enzyme CB4_01987 PF13193 AMP-binding enzyme C-terminal domain CB4_01989 PF12323 Helix-turn-helix domain CB4_01989 PF01385 Probable transposase CB4_01989 PF07282 Putative transposase DNA-binding domain CB4_01991 PF02682 Carboxyltransferase domain, subdomain C and D CB4_01992 PF02626 Carboxyltransferase domain, subdomain A and B CB4_01993 PF03746 LamB/YcsF family CB4_01994 PF02954 Bacterial regulatory protein, Fis family CB4_01994 PF00158 Sigma-54 interaction domain CB4_01994 PF00989 PAS fold CB4_01995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_01995 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_01995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_01996 PF02803 Thiolase, C-terminal domain CB4_01996 PF00108 Thiolase, N-terminal domain CB4_01998 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_01999 PF00557 Metallopeptidase family M24 CB4_02000 PF06580 Histidine kinase CB4_02000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02001 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02001 PF06580 Histidine kinase CB4_02002 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CB4_02002 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CB4_02003 PF00324 Amino acid permease CB4_02004 PF16859 Tetracyclin repressor-like, C-terminal domain CB4_02004 PF00440 Bacterial regulatory proteins, tetR family CB4_02005 PF07690 Major Facilitator Superfamily CB4_02006 PF01047 MarR family CB4_02007 PF00171 Aldehyde dehydrogenase family CB4_02008 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CB4_02008 PF01871 AMMECR1 CB4_02009 PF00120 Glutamine synthetase, catalytic domain CB4_02009 PF03951 Glutamine synthetase, beta-Grasp domain CB4_02010 PF07722 Peptidase C26 CB4_02012 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_02014 PF00072 Response regulator receiver domain CB4_02014 PF00990 Diguanylate cyclase, GGDEF domain CB4_02015 PF02583 Metal-sensitive transcriptional repressor CB4_02016 PF00403 Heavy-metal-associated domain CB4_02017 PF00403 Heavy-metal-associated domain CB4_02018 PF03358 NADPH-dependent FMN reductase CB4_02020 PF13673 Acetyltransferase (GNAT) domain CB4_02021 PF01047 MarR family CB4_02022 PF00486 Transcriptional regulatory protein, C terminal CB4_02022 PF00072 Response regulator receiver domain CB4_02023 PF00672 HAMP domain CB4_02023 PF00512 His Kinase A (phospho-acceptor) domain CB4_02023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02026 PF01177 Asp/Glu/Hydantoin racemase CB4_02027 PF02875 Mur ligase family, glutamate ligase domain CB4_02027 PF01225 Mur ligase family, catalytic domain CB4_02027 PF08245 Mur ligase middle domain CB4_02037 PF14398 YheC/D like ATP-grasp CB4_02038 PF01225 Mur ligase family, catalytic domain CB4_02038 PF08245 Mur ligase middle domain CB4_02038 PF02875 Mur ligase family, glutamate ligase domain CB4_02041 PF02687 FtsX-like permease family CB4_02041 PF12704 MacB-like periplasmic core domain CB4_02043 PF12704 MacB-like periplasmic core domain CB4_02043 PF02687 FtsX-like permease family CB4_02043 PF00005 ABC transporter CB4_02047 PF00171 Aldehyde dehydrogenase family CB4_02049 PF00581 Rhodanese-like domain CB4_02055 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02056 PF08402 TOBE domain CB4_02056 PF00005 ABC transporter CB4_02057 PF00455 DeoR C terminal sensor domain CB4_02057 PF08220 DeoR-like helix-turn-helix domain CB4_02059 PF00893 Small Multidrug Resistance protein CB4_02060 PF00893 Small Multidrug Resistance protein CB4_02061 PF00291 Pyridoxal-phosphate dependent enzyme CB4_02064 PF00005 ABC transporter CB4_02067 PF00395 S-layer homology domain CB4_02068 PF01809 Putative membrane protein insertion efficiency factor CB4_02069 PF07683 Cobalamin synthesis protein cobW C-terminal domain CB4_02069 PF02492 CobW/HypB/UreG, nucleotide-binding domain CB4_02070 PF07457 Protein of unknown function (DUF1516) CB4_02071 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CB4_02075 PF09335 SNARE associated Golgi protein CB4_02077 PF00574 Clp protease CB4_02079 PF07690 Major Facilitator Superfamily CB4_02082 PF01580 FtsK/SpoIIIE family CB4_02082 PF09397 Ftsk gamma domain CB4_02082 PF17854 FtsK alpha domain CB4_02083 PF01741 Large-conductance mechanosensitive channel, MscL CB4_02085 PF01432 Peptidase family M3 CB4_02085 PF08439 Oligopeptidase F CB4_02087 PF12822 ECF transporter, substrate-specific component CB4_02089 PF00072 Response regulator receiver domain CB4_02089 PF00486 Transcriptional regulatory protein, C terminal CB4_02090 PF13426 PAS domain CB4_02090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02090 PF00512 His Kinase A (phospho-acceptor) domain CB4_02090 PF00672 HAMP domain CB4_02095 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CB4_02095 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CB4_02096 PF13361 UvrD-like helicase C-terminal domain CB4_02096 PF00580 UvrD/REP helicase N-terminal domain CB4_02097 PF17783 CvfB-like winged helix domain CB4_02097 PF13509 S1 domain CB4_02101 PF07833 Copper amine oxidase N-terminal domain CB4_02102 PF00877 NlpC/P60 family CB4_02102 PF01476 LysM domain CB4_02105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CB4_02105 PF00378 Enoyl-CoA hydratase/isomerase CB4_02105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CB4_02106 PF00108 Thiolase, N-terminal domain CB4_02106 PF02803 Thiolase, C-terminal domain CB4_02107 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_02107 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_02107 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_02108 PF13193 AMP-binding enzyme C-terminal domain CB4_02108 PF00501 AMP-binding enzyme CB4_02110 PF00730 HhH-GPD superfamily base excision DNA repair protein CB4_02110 PF00633 Helix-hairpin-helix motif CB4_02110 PF10576 Iron-sulfur binding domain of endonuclease III CB4_02112 PF08439 Oligopeptidase F CB4_02112 PF01432 Peptidase family M3 CB4_02114 PF05036 Sporulation related domain CB4_02114 PF01520 N-acetylmuramoyl-L-alanine amidase CB4_02115 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CB4_02115 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_02116 PF01569 PAP2 superfamily CB4_02119 PF00892 EamA-like transporter family CB4_02120 PF01476 LysM domain CB4_02120 PF00704 Glycosyl hydrolases family 18 CB4_02121 PF00313 'Cold-shock' DNA-binding domain CB4_02122 PF02559 CarD-like/TRCF domain CB4_02123 PF00239 Resolvase, N terminal domain CB4_02123 PF02796 Helix-turn-helix domain of resolvase CB4_02129 PF00704 Glycosyl hydrolases family 18 CB4_02129 PF01476 LysM domain CB4_02130 PF04226 Transglycosylase associated protein CB4_02131 PF00753 Metallo-beta-lactamase superfamily CB4_02132 PF01170 Putative RNA methylase family UPF0020 CB4_02132 PF02926 THUMP domain CB4_02135 PF03707 Bacterial signalling protein N terminal repeat CB4_02135 PF00990 Diguanylate cyclase, GGDEF domain CB4_02135 PF00563 EAL domain CB4_02139 PF03781 Sulfatase-modifying factor enzyme 1 CB4_02140 PF08361 MAATS-type transcriptional repressor, C-terminal region CB4_02140 PF00440 Bacterial regulatory proteins, tetR family CB4_02141 PF01593 Flavin containing amine oxidoreductase CB4_02142 PF02954 Bacterial regulatory protein, Fis family CB4_02142 PF00158 Sigma-54 interaction domain CB4_02142 PF00072 Response regulator receiver domain CB4_02143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02143 PF00512 His Kinase A (phospho-acceptor) domain CB4_02144 PF00465 Iron-containing alcohol dehydrogenase CB4_02145 PF00465 Iron-containing alcohol dehydrogenase CB4_02146 PF02627 Carboxymuconolactone decarboxylase family CB4_02147 PF01619 Proline dehydrogenase CB4_02148 PF00571 CBS domain CB4_02150 PF01521 Iron-sulphur cluster biosynthesis CB4_02151 PF02110 Hydroxyethylthiazole kinase family CB4_02152 PF02581 Thiamine monophosphate synthase CB4_02153 PF00986 DNA gyrase B subunit, carboxyl terminus CB4_02153 PF00204 DNA gyrase B CB4_02153 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02153 PF01751 Toprim domain CB4_02154 PF00521 DNA gyrase/topoisomerase IV, subunit A CB4_02154 PF03989 DNA gyrase C-terminal domain, beta-propeller CB4_02155 PF00575 S1 RNA binding domain CB4_02156 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CB4_02156 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CB4_02157 PF00440 Bacterial regulatory proteins, tetR family CB4_02158 PF00258 Flavodoxin CB4_02158 PF00067 Cytochrome P450 CB4_02158 PF00175 Oxidoreductase NAD-binding domain CB4_02158 PF00667 FAD binding domain CB4_02160 PF00296 Luciferase-like monooxygenase CB4_02163 PF03412 Peptidase C39 family CB4_02163 PF00664 ABC transporter transmembrane region CB4_02163 PF00005 ABC transporter CB4_02165 PF00375 Sodium:dicarboxylate symporter family CB4_02166 PF00375 Sodium:dicarboxylate symporter family CB4_02169 PF02621 Menaquinone biosynthesis CB4_02170 PF01048 Phosphorylase superfamily CB4_02172 PF00582 Universal stress protein family CB4_02173 PF00871 Acetokinase family CB4_02175 PF00694 Aconitase C-terminal domain CB4_02176 PF00330 Aconitase family (aconitate hydratase) CB4_02177 PF03466 LysR substrate binding domain CB4_02177 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_02179 PF00892 EamA-like transporter family CB4_02181 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CB4_02181 PF18277 AbrB C-terminal domain CB4_02184 PF07098 Protein of unknown function (DUF1360) CB4_02186 PF11849 Domain of unknown function (DUF3369) CB4_02187 PF13307 Helicase C-terminal domain CB4_02187 PF04851 Type III restriction enzyme, res subunit CB4_02190 PF02540 NAD synthase CB4_02192 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CB4_02192 PF18277 AbrB C-terminal domain CB4_02194 PF00440 Bacterial regulatory proteins, tetR family CB4_02194 PF16859 Tetracyclin repressor-like, C-terminal domain CB4_02198 PF01370 NAD dependent epimerase/dehydratase family CB4_02198 PF08338 Domain of unknown function (DUF1731) CB4_02199 PF00248 Aldo/keto reductase family CB4_02202 PF00704 Glycosyl hydrolases family 18 CB4_02204 PF00578 AhpC/TSA family CB4_02205 PF00892 EamA-like transporter family CB4_02206 PF07690 Major Facilitator Superfamily CB4_02208 PF04143 Sulphur transport CB4_02209 PF05675 Protein of unknown function (DUF817) CB4_02211 PF03824 High-affinity nickel-transport protein CB4_02212 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02212 PF00672 HAMP domain CB4_02212 PF02743 Cache domain CB4_02213 PF01235 Sodium:alanine symporter family CB4_02214 PF04960 Glutaminase CB4_02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02216 PF08664 YcbB domain CB4_02216 PF00072 Response regulator receiver domain CB4_02217 PF01022 Bacterial regulatory protein, arsR family CB4_02218 PF02040 Arsenical pump membrane protein CB4_02219 PF01451 Low molecular weight phosphotyrosine protein phosphatase CB4_02224 PF13847 Methyltransferase domain CB4_02225 PF04172 LrgB-like family CB4_02226 PF03788 LrgA family CB4_02231 PF04012 PspA/IM30 family CB4_02233 PF00672 HAMP domain CB4_02233 PF07730 Histidine kinase CB4_02233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02234 PF00072 Response regulator receiver domain CB4_02234 PF00196 Bacterial regulatory proteins, luxR family CB4_02235 PF00989 PAS fold CB4_02235 PF00512 His Kinase A (phospho-acceptor) domain CB4_02235 PF13426 PAS domain CB4_02235 PF13188 PAS domain CB4_02235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02241 PF00392 Bacterial regulatory proteins, gntR family CB4_02241 PF00155 Aminotransferase class I and II CB4_02242 PF00465 Iron-containing alcohol dehydrogenase CB4_02244 PF13291 ACT domain CB4_02244 PF00291 Pyridoxal-phosphate dependent enzyme CB4_02245 PF11728 Putative aromatic acid exporter C-terminal domain CB4_02245 PF06081 Aromatic acid exporter family member 1 CB4_02247 PF00753 Metallo-beta-lactamase superfamily CB4_02247 PF00581 Rhodanese-like domain CB4_02248 PF13686 DsrE/DsrF/DrsH-like family CB4_02249 PF00581 Rhodanese-like domain CB4_02249 PF01206 Sulfurtransferase TusA CB4_02250 PF00437 Type II/IV secretion system protein CB4_02254 PF00482 Type II secretion system (T2SS), protein F CB4_02259 PF02719 Polysaccharide biosynthesis protein CB4_02260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CB4_02261 PF00534 Glycosyl transferases group 1 CB4_02262 PF02698 DUF218 domain CB4_02263 PF02397 Bacterial sugar transferase CB4_02264 PF13614 AAA domain CB4_02266 PF13439 Glycosyltransferase Family 4 CB4_02266 PF00534 Glycosyl transferases group 1 CB4_02268 PF00534 Glycosyl transferases group 1 CB4_02268 PF13439 Glycosyltransferase Family 4 CB4_02270 PF01370 NAD dependent epimerase/dehydratase family CB4_02271 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CB4_02271 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CB4_02271 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CB4_02272 PF13477 Glycosyl transferase 4-like CB4_02272 PF00534 Glycosyl transferases group 1 CB4_02275 PF00563 EAL domain CB4_02275 PF00990 Diguanylate cyclase, GGDEF domain CB4_02275 PF03707 Bacterial signalling protein N terminal repeat CB4_02277 PF12848 ABC transporter CB4_02277 PF00005 ABC transporter CB4_02280 PF13456 Reverse transcriptase-like CB4_02281 PF13840 ACT domain CB4_02281 PF00696 Amino acid kinase family CB4_02286 PF13037 Domain of unknown function (DUF3898) CB4_02286 PF13039 Protein of unknown function (DUF3900) CB4_02287 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CB4_02287 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CB4_02296 PF04354 ZipA, C-terminal FtsZ-binding domain CB4_02301 PF04002 RadC-like JAB domain CB4_02337 PF00395 S-layer homology domain CB4_02337 PF02903 Alpha amylase, N-terminal ig-like domain CB4_02337 PF00128 Alpha amylase, catalytic domain CB4_02339 PF01471 Putative peptidoglycan binding domain CB4_02339 PF01510 N-acetylmuramoyl-L-alanine amidase CB4_02358 PF02899 Phage integrase, N-terminal SAM-like domain CB4_02358 PF00589 Phage integrase family CB4_02362 PF06866 Protein of unknown function (DUF1256) CB4_02365 PF13476 AAA domain CB4_02368 PF00436 Single-strand binding protein family CB4_02380 PF03838 Recombination protein U CB4_02393 PF04545 Sigma-70, region 4 CB4_02393 PF04542 Sigma-70 region 2 CB4_02393 PF04539 Sigma-70 region 3 CB4_02399 PF10137 Predicted nucleotide-binding protein containing TIR-like domain CB4_02406 PF04232 Stage V sporulation protein S (SpoVS) CB4_02407 PF04545 Sigma-70, region 4 CB4_02407 PF04542 Sigma-70 region 2 CB4_02411 PF13539 D-alanyl-D-alanine carboxypeptidase CB4_02415 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_02417 PF00145 C-5 cytosine-specific DNA methylase CB4_02418 PF17209 Hfq protein CB4_02420 PF03374 Phage antirepressor protein KilAC domain CB4_02420 PF09669 Phage regulatory protein Rha (Phage_pRha) CB4_02428 PF07690 Major Facilitator Superfamily CB4_02429 PF09587 Bacterial capsule synthesis protein PGA_cap CB4_02433 PF00324 Amino acid permease CB4_02434 PF00324 Amino acid permease CB4_02435 PF00324 Amino acid permease CB4_02438 PF07849 Protein of unknown function (DUF1641) CB4_02440 PF06505 Activator of aromatic catabolism CB4_02440 PF02830 V4R domain CB4_02440 PF00158 Sigma-54 interaction domain CB4_02440 PF02954 Bacterial regulatory protein, Fis family CB4_02443 PF02332 Methane/Phenol/Toluene Hydroxylase CB4_02443 PF04945 YHS domain CB4_02445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CB4_02446 PF00111 2Fe-2S iron-sulfur cluster binding domain CB4_02446 PF00970 Oxidoreductase FAD-binding domain CB4_02446 PF00175 Oxidoreductase NAD-binding domain CB4_02447 PF03928 Haem-degrading CB4_02448 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CB4_02449 PF00111 2Fe-2S iron-sulfur cluster binding domain CB4_02450 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_02451 PF01118 Semialdehyde dehydrogenase, NAD binding domain CB4_02451 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CB4_02452 PF00682 HMGL-like CB4_02452 PF07836 DmpG-like communication domain CB4_02454 PF01361 Tautomerase enzyme CB4_02455 PF00171 Aldehyde dehydrogenase family CB4_02457 PF03845 Spore germination protein CB4_02458 PF03323 Bacillus/Clostridium GerA spore germination protein CB4_02459 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_02460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CB4_02464 PF03466 LysR substrate binding domain CB4_02464 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_02465 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CB4_02465 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CB4_02466 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_02467 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_02468 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CB4_02469 PF03458 UPF0126 domain CB4_02472 PF00877 NlpC/P60 family CB4_02477 PF00069 Protein kinase domain CB4_02477 PF03793 PASTA domain CB4_02478 PF02743 Cache domain CB4_02478 PF00672 HAMP domain CB4_02478 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02479 PF13193 AMP-binding enzyme C-terminal domain CB4_02479 PF00501 AMP-binding enzyme CB4_02480 PF00893 Small Multidrug Resistance protein CB4_02481 PF00893 Small Multidrug Resistance protein CB4_02483 PF07690 Major Facilitator Superfamily CB4_02484 PF01425 Amidase CB4_02485 PF00313 'Cold-shock' DNA-binding domain CB4_02486 PF00271 Helicase conserved C-terminal domain CB4_02486 PF00270 DEAD/DEAH box helicase CB4_02487 PF02559 CarD-like/TRCF domain CB4_02489 PF01569 PAP2 superfamily CB4_02490 PF00905 Penicillin binding protein transpeptidase domain CB4_02490 PF00912 Transglycosylase CB4_02490 PF17092 Penicillin-binding protein OB-like domain CB4_02491 PF09335 SNARE associated Golgi protein CB4_02492 PF00005 ABC transporter CB4_02493 PF12679 ABC-2 family transporter protein CB4_02496 PF05728 Uncharacterised protein family (UPF0227) CB4_02497 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CB4_02499 PF06445 GyrI-like small molecule binding domain CB4_02499 PF13411 MerR HTH family regulatory protein CB4_02500 PF07690 Major Facilitator Superfamily CB4_02501 PF03323 Bacillus/Clostridium GerA spore germination protein CB4_02502 PF03845 Spore germination protein CB4_02503 PF05504 Spore germination B3/ GerAC like, C-terminal CB4_02504 PF01063 Amino-transferase class IV CB4_02505 PF06207 Protein of unknown function (DUF1002) CB4_02506 PF01842 ACT domain CB4_02506 PF00742 Homoserine dehydrogenase CB4_02506 PF03447 Homoserine dehydrogenase, NAD binding domain CB4_02508 PF02675 S-adenosylmethionine decarboxylase CB4_02509 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CB4_02509 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CB4_02512 PF04551 GcpE protein CB4_02513 PF00375 Sodium:dicarboxylate symporter family CB4_02515 PF00069 Protein kinase domain CB4_02515 PF03793 PASTA domain CB4_02516 PF00395 S-layer homology domain CB4_02516 PF00150 Cellulase (glycosyl hydrolase family 5) CB4_02516 PF03424 Carbohydrate binding domain (family 17/28) CB4_02519 PF02515 CoA-transferase family III CB4_02522 PF01541 GIY-YIG catalytic domain CB4_02522 PF02151 UvrB/uvrC motif CB4_02522 PF08459 UvrC Helix-hairpin-helix N-terminal CB4_02523 PF00994 Probable molybdopterin binding domain CB4_02525 PF07282 Putative transposase DNA-binding domain CB4_02525 PF01385 Probable transposase CB4_02525 PF12323 Helix-turn-helix domain CB4_02528 PF03551 Transcriptional regulator PadR-like family CB4_02529 PF01098 Cell cycle protein CB4_02530 PF00072 Response regulator receiver domain CB4_02530 PF00486 Transcriptional regulatory protein, C terminal CB4_02531 PF16736 Single Cache-like CB4_02531 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02531 PF00989 PAS fold CB4_02531 PF00512 His Kinase A (phospho-acceptor) domain CB4_02532 PF00394 Multicopper oxidase CB4_02532 PF07731 Multicopper oxidase CB4_02532 PF07732 Multicopper oxidase CB4_02533 PF00005 ABC transporter CB4_02534 PF02687 FtsX-like permease family CB4_02535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02535 PF00672 HAMP domain CB4_02535 PF00512 His Kinase A (phospho-acceptor) domain CB4_02536 PF00072 Response regulator receiver domain CB4_02536 PF00486 Transcriptional regulatory protein, C terminal CB4_02537 PF12323 Helix-turn-helix domain CB4_02537 PF01385 Probable transposase CB4_02537 PF07282 Putative transposase DNA-binding domain CB4_02538 PF07943 Penicillin-binding protein 5, C-terminal domain CB4_02538 PF00768 D-alanyl-D-alanine carboxypeptidase CB4_02539 PF00625 Guanylate kinase CB4_02540 PF02899 Phage integrase, N-terminal SAM-like domain CB4_02540 PF00589 Phage integrase family CB4_02541 PF02797 Chalcone and stilbene synthases, C-terminal domain CB4_02541 PF00195 Chalcone and stilbene synthases, N-terminal domain CB4_02542 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CB4_02543 PF00155 Aminotransferase class I and II CB4_02544 PF12804 MobA-like NTP transferase domain CB4_02545 PF03453 MoeA N-terminal region (domain I and II) CB4_02545 PF03454 MoeA C-terminal region (domain IV) CB4_02545 PF00994 Probable molybdopterin binding domain CB4_02546 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CB4_02547 PF02391 MoaE protein CB4_02549 PF00990 Diguanylate cyclase, GGDEF domain CB4_02549 PF00360 Phytochrome region CB4_02549 PF00563 EAL domain CB4_02549 PF01590 GAF domain CB4_02551 PF00664 ABC transporter transmembrane region CB4_02551 PF00005 ABC transporter CB4_02554 PF01370 NAD dependent epimerase/dehydratase family CB4_02554 PF08338 Domain of unknown function (DUF1731) CB4_02555 PF12680 SnoaL-like domain CB4_02555 PF08281 Sigma-70, region 4 CB4_02555 PF04542 Sigma-70 region 2 CB4_02556 PF12823 Domain of unknown function (DUF3817) CB4_02557 PF01022 Bacterial regulatory protein, arsR family CB4_02559 PF00873 AcrB/AcrD/AcrF family CB4_02562 PF00210 Ferritin-like domain CB4_02563 PF03323 Bacillus/Clostridium GerA spore germination protein CB4_02564 PF03845 Spore germination protein CB4_02565 PF05504 Spore germination B3/ GerAC like, C-terminal CB4_02566 PF00753 Metallo-beta-lactamase superfamily CB4_02566 PF16123 Hydroxyacylglutathione hydrolase C-terminus CB4_02567 PF07729 FCD domain CB4_02567 PF00392 Bacterial regulatory proteins, gntR family CB4_02568 PF13536 Putative multidrug resistance efflux transporter CB4_02569 PF01022 Bacterial regulatory protein, arsR family CB4_02571 PF00394 Multicopper oxidase CB4_02571 PF07731 Multicopper oxidase CB4_02571 PF07732 Multicopper oxidase CB4_02572 PF03239 Iron permease FTR1 family CB4_02574 PF13188 PAS domain CB4_02574 PF13426 PAS domain CB4_02574 PF00512 His Kinase A (phospho-acceptor) domain CB4_02574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02574 PF00989 PAS fold CB4_02576 PF16326 ABC transporter C-terminal domain CB4_02576 PF00005 ABC transporter CB4_02576 PF12848 ABC transporter CB4_02579 PF00378 Enoyl-CoA hydratase/isomerase CB4_02582 PF03601 Conserved hypothetical protein 698 CB4_02583 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_02583 PF03466 LysR substrate binding domain CB4_02587 PF02834 LigT like Phosphoesterase CB4_02588 PF16916 Dimerisation domain of Zinc Transporter CB4_02588 PF01545 Cation efflux family CB4_02589 PF00248 Aldo/keto reductase family CB4_02591 PF01230 HIT domain CB4_02592 PF04851 Type III restriction enzyme, res subunit CB4_02592 PF00271 Helicase conserved C-terminal domain CB4_02593 PF01545 Cation efflux family CB4_02593 PF16916 Dimerisation domain of Zinc Transporter CB4_02596 PF00916 Sulfate permease family CB4_02596 PF01740 STAS domain CB4_02597 PF13411 MerR HTH family regulatory protein CB4_02597 PF07739 TipAS antibiotic-recognition domain CB4_02600 PF00892 EamA-like transporter family CB4_02602 PF07690 Major Facilitator Superfamily CB4_02603 PF03313 Serine dehydratase alpha chain CB4_02605 PF03313 Serine dehydratase alpha chain CB4_02606 PF03315 Serine dehydratase beta chain CB4_02606 PF01842 ACT domain CB4_02607 PF00303 Thymidylate synthase CB4_02608 PF00186 Dihydrofolate reductase CB4_02609 PF00106 short chain dehydrogenase CB4_02609 PF00561 alpha/beta hydrolase fold CB4_02610 PF13411 MerR HTH family regulatory protein CB4_02611 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02611 PF00672 HAMP domain CB4_02611 PF02743 Cache domain CB4_02612 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CB4_02612 PF01522 Polysaccharide deacetylase CB4_02615 PF02525 Flavodoxin-like fold CB4_02617 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02618 PF00005 ABC transporter CB4_02621 PF00873 AcrB/AcrD/AcrF family CB4_02623 PF00589 Phage integrase family CB4_02626 PF00395 S-layer homology domain CB4_02627 PF00892 EamA-like transporter family CB4_02628 PF01381 Helix-turn-helix CB4_02628 PF07883 Cupin domain CB4_02633 PF01047 MarR family CB4_02634 PF00529 HlyD membrane-fusion protein of T1SS CB4_02634 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CB4_02636 PF07690 Major Facilitator Superfamily CB4_02637 PF12706 Beta-lactamase superfamily domain CB4_02638 PF01022 Bacterial regulatory protein, arsR family CB4_02639 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CB4_02639 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_02640 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_02641 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CB4_02645 PF00293 NUDIX domain CB4_02648 PF10057 Uncharacterized conserved protein (DUF2294) CB4_02649 PF06146 Phosphate-starvation-inducible E CB4_02650 PF07849 Protein of unknown function (DUF1641) CB4_02651 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CB4_02651 PF00037 4Fe-4S binding domain CB4_02651 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CB4_02651 PF01568 Molydopterin dinucleotide binding domain CB4_02651 PF00384 Molybdopterin oxidoreductase CB4_02652 PF02673 Bacitracin resistance protein BacA CB4_02653 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CB4_02653 PF00005 ABC transporter CB4_02654 PF07690 Major Facilitator Superfamily CB4_02655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CB4_02655 PF00005 ABC transporter CB4_02657 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02658 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CB4_02659 PF03239 Iron permease FTR1 family CB4_02660 PF05860 haemagglutination activity domain CB4_02660 PF13332 Hemagglutinin repeat CB4_02660 PF02661 Fic/DOC family CB4_02660 PF03543 Yersinia/Haemophilus virulence surface antigen CB4_02660 PF13018 Extended Signal Peptide of Type V secretion system CB4_02662 PF08361 MAATS-type transcriptional repressor, C-terminal region CB4_02662 PF00440 Bacterial regulatory proteins, tetR family CB4_02664 PF13382 Adenine deaminase C-terminal domain CB4_02664 PF01979 Amidohydrolase family CB4_02666 PF03551 Transcriptional regulator PadR-like family CB4_02666 PF13847 Methyltransferase domain CB4_02669 PF00205 Thiamine pyrophosphate enzyme, central domain CB4_02669 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CB4_02669 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CB4_02670 PF00171 Aldehyde dehydrogenase family CB4_02671 PF01645 Conserved region in glutamate synthase CB4_02672 PF00296 Luciferase-like monooxygenase CB4_02675 PF01022 Bacterial regulatory protein, arsR family CB4_02676 PF13847 Methyltransferase domain CB4_02676 PF03551 Transcriptional regulator PadR-like family CB4_02683 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02683 PF00672 HAMP domain CB4_02683 PF02743 Cache domain CB4_02685 PF00664 ABC transporter transmembrane region CB4_02685 PF00005 ABC transporter CB4_02686 PF00664 ABC transporter transmembrane region CB4_02686 PF00005 ABC transporter CB4_02687 PF01047 MarR family CB4_02690 PF00512 His Kinase A (phospho-acceptor) domain CB4_02690 PF00672 HAMP domain CB4_02690 PF13426 PAS domain CB4_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02691 PF00072 Response regulator receiver domain CB4_02691 PF00486 Transcriptional regulatory protein, C terminal CB4_02692 PF01648 4'-phosphopantetheinyl transferase superfamily CB4_02693 PF00501 AMP-binding enzyme CB4_02693 PF00550 Phosphopantetheine attachment site CB4_02693 PF13193 AMP-binding enzyme C-terminal domain CB4_02693 PF00668 Condensation domain CB4_02694 PF13243 Squalene-hopene cyclase C-terminal domain CB4_02694 PF13249 Squalene-hopene cyclase N-terminal domain CB4_02695 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_02706 PF02899 Phage integrase, N-terminal SAM-like domain CB4_02706 PF00589 Phage integrase family CB4_02714 PF03358 NADPH-dependent FMN reductase CB4_02728 PF00067 Cytochrome P450 CB4_02729 PF00155 Aminotransferase class I and II CB4_02730 PF03744 6-carboxyhexanoate--CoA ligase CB4_02731 PF01790 Prolipoprotein diacylglyceryl transferase CB4_02734 PF00512 His Kinase A (phospho-acceptor) domain CB4_02734 PF18719 ArlS sensor domain CB4_02734 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02735 PF00072 Response regulator receiver domain CB4_02735 PF00486 Transcriptional regulatory protein, C terminal CB4_02736 PF00072 Response regulator receiver domain CB4_02736 PF00486 Transcriptional regulatory protein, C terminal CB4_02737 PF13426 PAS domain CB4_02737 PF00512 His Kinase A (phospho-acceptor) domain CB4_02737 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02737 PF00672 HAMP domain CB4_02739 PF00005 ABC transporter CB4_02742 PF00877 NlpC/P60 family CB4_02742 PF01476 LysM domain CB4_02745 PF00893 Small Multidrug Resistance protein CB4_02746 PF00440 Bacterial regulatory proteins, tetR family CB4_02746 PF17934 Tetracyclin repressor-like, C-terminal domain CB4_02748 PF09335 SNARE associated Golgi protein CB4_02749 PF02743 Cache domain CB4_02749 PF00672 HAMP domain CB4_02749 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02752 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02752 PF00512 His Kinase A (phospho-acceptor) domain CB4_02753 PF02602 Uroporphyrinogen-III synthase HemD CB4_02755 PF03641 Possible lysine decarboxylase CB4_02756 PF03819 MazG nucleotide pyrophosphohydrolase domain CB4_02758 PF03772 Competence protein CB4_02758 PF00753 Metallo-beta-lactamase superfamily CB4_02759 PF01235 Sodium:alanine symporter family CB4_02760 PF00999 Sodium/hydrogen exchanger family CB4_02763 PF01022 Bacterial regulatory protein, arsR family CB4_02773 PF10263 SprT-like family CB4_02775 PF08402 TOBE domain CB4_02775 PF00005 ABC transporter CB4_02776 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02777 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02778 PF13416 Bacterial extracellular solute-binding protein CB4_02779 PF00004 ATPase family associated with various cellular activities (AAA) CB4_02779 PF07724 AAA domain (Cdc48 subfamily) CB4_02779 PF10431 C-terminal, D2-small domain, of ClpB protein CB4_02779 PF17871 AAA lid domain CB4_02780 PF07690 Major Facilitator Superfamily CB4_02781 PF00133 tRNA synthetases class I (I, L, M and V) CB4_02781 PF08264 Anticodon-binding domain of tRNA CB4_02783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02783 PF00672 HAMP domain CB4_02783 PF13426 PAS domain CB4_02783 PF00512 His Kinase A (phospho-acceptor) domain CB4_02784 PF00486 Transcriptional regulatory protein, C terminal CB4_02784 PF00072 Response regulator receiver domain CB4_02787 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CB4_02788 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CB4_02794 PF03745 Domain of unknown function (DUF309) CB4_02796 PF06725 3D domain CB4_02796 PF01476 LysM domain CB4_02797 PF13476 AAA domain CB4_02798 PF12320 Type 5 capsule protein repressor C-terminal domain CB4_02798 PF00149 Calcineurin-like phosphoesterase CB4_02799 PF00580 UvrD/REP helicase N-terminal domain CB4_02799 PF12705 PD-(D/E)XK nuclease superfamily CB4_02799 PF13361 UvrD-like helicase C-terminal domain CB4_02800 PF12705 PD-(D/E)XK nuclease superfamily CB4_02801 PF02146 Sir2 family CB4_02804 PF01131 DNA topoisomerase CB4_02804 PF01751 Toprim domain CB4_02806 PF00072 Response regulator receiver domain CB4_02806 PF04397 LytTr DNA-binding domain CB4_02807 PF06580 Histidine kinase CB4_02807 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02809 PF12848 ABC transporter CB4_02809 PF00005 ABC transporter CB4_02812 PF01895 PhoU domain CB4_02813 PF00929 Exonuclease CB4_02814 PF07681 DoxX CB4_02815 PF00384 Molybdopterin oxidoreductase CB4_02815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CB4_02815 PF01568 Molydopterin dinucleotide binding domain CB4_02820 PF13520 Amino acid permease CB4_02822 PF00391 PEP-utilising enzyme, mobile domain CB4_02822 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CB4_02823 PF00364 Biotin-requiring enzyme CB4_02823 PF00561 alpha/beta hydrolase fold CB4_02825 PF10415 Fumarase C C-terminus CB4_02825 PF00206 Lyase CB4_02826 PF13193 AMP-binding enzyme C-terminal domain CB4_02826 PF00501 AMP-binding enzyme CB4_02827 PF00266 Aminotransferase class-V CB4_02828 PF01261 Xylose isomerase-like TIM barrel CB4_02831 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_02831 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CB4_02832 PF08239 Bacterial SH3 domain CB4_02832 PF00877 NlpC/P60 family CB4_02832 PF01476 LysM domain CB4_02833 PF12392 Collagenase CB4_02833 PF01136 Peptidase family U32 CB4_02834 PF00239 Resolvase, N terminal domain CB4_02835 PF05979 Bacterial protein of unknown function (DUF896) CB4_02836 PF01476 LysM domain CB4_02837 PF00717 Peptidase S24-like CB4_02837 PF01726 LexA DNA binding domain CB4_02838 PF04306 Protein of unknown function (DUF456) CB4_02839 PF07282 Putative transposase DNA-binding domain CB4_02839 PF12323 Helix-turn-helix domain CB4_02839 PF01385 Probable transposase CB4_02841 PF03458 UPF0126 domain CB4_02842 PF00375 Sodium:dicarboxylate symporter family CB4_02843 PF00464 Serine hydroxymethyltransferase CB4_02844 PF00155 Aminotransferase class I and II CB4_02844 PF00392 Bacterial regulatory proteins, gntR family CB4_02845 PF00202 Aminotransferase class-III CB4_02846 PF01168 Alanine racemase, N-terminal domain CB4_02848 PF01609 Transposase DDE domain CB4_02850 PF03951 Glutamine synthetase, beta-Grasp domain CB4_02850 PF00120 Glutamine synthetase, catalytic domain CB4_02851 PF13411 MerR HTH family regulatory protein CB4_02852 PF06838 Methionine gamma-lyase CB4_02857 PF01584 CheW-like domain CB4_02857 PF00072 Response regulator receiver domain CB4_02858 PF17866 AAA lid domain CB4_02858 PF00004 ATPase family associated with various cellular activities (AAA) CB4_02859 PF00188 Cysteine-rich secretory protein family CB4_02862 PF00873 AcrB/AcrD/AcrF family CB4_02874 PF00155 Aminotransferase class I and II CB4_02875 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02876 PF00005 ABC transporter CB4_02876 PF09383 NIL domain CB4_02877 PF01522 Polysaccharide deacetylase CB4_02878 PF17209 Hfq protein CB4_02880 PF04445 Putative SAM-dependent methyltransferase CB4_02881 PF10776 Protein of unknown function (DUF2600) CB4_02884 PF07676 WD40-like Beta Propeller Repeat CB4_02884 PF00326 Prolyl oligopeptidase family CB4_02885 PF06146 Phosphate-starvation-inducible E CB4_02886 PF00294 pfkB family carbohydrate kinase CB4_02888 PF11738 Protein of unknown function (DUF3298) CB4_02888 PF01522 Polysaccharide deacetylase CB4_02888 PF13739 Deacetylase PdaC CB4_02890 PF02743 Cache domain CB4_02890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02890 PF00672 HAMP domain CB4_02892 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CB4_02892 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_02894 PF02600 Disulfide bond formation protein DsbB CB4_02895 PF13462 Thioredoxin CB4_02896 PF00563 EAL domain CB4_02896 PF00990 Diguanylate cyclase, GGDEF domain CB4_02896 PF03707 Bacterial signalling protein N terminal repeat CB4_02898 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CB4_02899 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CB4_02899 PF18277 AbrB C-terminal domain CB4_02902 PF08361 MAATS-type transcriptional repressor, C-terminal region CB4_02902 PF00440 Bacterial regulatory proteins, tetR family CB4_02905 PF02659 Putative manganese efflux pump CB4_02909 PF00690 Cation transporter/ATPase, N-terminus CB4_02909 PF00689 Cation transporting ATPase, C-terminus CB4_02911 PF13089 Polyphosphate kinase N-terminal domain CB4_02911 PF13090 Polyphosphate kinase C-terminal domain 2 CB4_02911 PF17941 Polyphosphate kinase C-terminal domain 1 CB4_02911 PF02503 Polyphosphate kinase middle domain CB4_02912 PF00672 HAMP domain CB4_02912 PF02743 Cache domain CB4_02912 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02915 PF13280 WYL domain CB4_02915 PF08279 HTH domain CB4_02916 PF00497 Bacterial extracellular solute-binding proteins, family 3 CB4_02917 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02918 PF00005 ABC transporter CB4_02919 PF01648 4'-phosphopantetheinyl transferase superfamily CB4_02920 PF13193 AMP-binding enzyme C-terminal domain CB4_02920 PF00550 Phosphopantetheine attachment site CB4_02920 PF00668 Condensation domain CB4_02920 PF00501 AMP-binding enzyme CB4_02921 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02921 PF05227 CHASE3 domain CB4_02921 PF00672 HAMP domain CB4_02923 PF02040 Arsenical pump membrane protein CB4_02924 PF02683 Cytochrome C biogenesis protein transmembrane region CB4_02925 PF08534 Redoxin CB4_02926 PF02687 FtsX-like permease family CB4_02927 PF00005 ABC transporter CB4_02928 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02930 PF00072 Response regulator receiver domain CB4_02930 PF00486 Transcriptional regulatory protein, C terminal CB4_02937 PF01609 Transposase DDE domain CB4_02940 PF06271 RDD family CB4_02942 PF06271 RDD family CB4_02950 PF05163 DinB family CB4_02953 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_02956 PF01047 MarR family CB4_02958 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_02958 PF03466 LysR substrate binding domain CB4_02960 PF11799 impB/mucB/samB family C-terminal domain CB4_02960 PF11798 IMS family HHH motif CB4_02960 PF00817 impB/mucB/samB family CB4_02965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02965 PF00672 HAMP domain CB4_02965 PF02743 Cache domain CB4_02970 PF13302 Acetyltransferase (GNAT) domain CB4_02972 PF01119 DNA mismatch repair protein, C-terminal domain CB4_02972 PF08676 MutL C terminal dimerisation domain CB4_02973 PF05192 MutS domain III CB4_02973 PF00488 MutS domain V CB4_02973 PF05190 MutS family domain IV CB4_02973 PF01624 MutS domain I CB4_02978 PF12323 Helix-turn-helix domain CB4_02978 PF01385 Probable transposase CB4_02978 PF07282 Putative transposase DNA-binding domain CB4_02981 PF17202 Single cache domain 3 CB4_02981 PF00672 HAMP domain CB4_02981 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02983 PF10628 Outer spore coat protein E (CotE) CB4_02984 PF06133 Control of competence regulator ComK, YlbF/YmcA CB4_02985 PF00919 Uncharacterized protein family UPF0004 CB4_02985 PF01938 TRAM domain CB4_02985 PF04055 Radical SAM superfamily CB4_02986 PF00512 His Kinase A (phospho-acceptor) domain CB4_02986 PF01627 Hpt domain CB4_02986 PF00989 PAS fold CB4_02986 PF00072 Response regulator receiver domain CB4_02986 PF00497 Bacterial extracellular solute-binding proteins, family 3 CB4_02986 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02988 PF00072 Response regulator receiver domain CB4_02990 PF06962 Putative rRNA methylase CB4_02991 PF12706 Beta-lactamase superfamily domain CB4_02992 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CB4_02993 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CB4_02993 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CB4_02993 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CB4_02994 PF04232 Stage V sporulation protein S (SpoVS) CB4_02995 PF01966 HD domain CB4_02995 PF00013 KH domain CB4_02995 PF12072 Domain of unknown function (DUF3552) CB4_02996 PF02631 RecX family CB4_02997 PF00154 recA bacterial DNA recombination protein CB4_02998 PF02632 BioY family CB4_03000 PF00202 Aminotransferase class-III CB4_03001 PF00271 Helicase conserved C-terminal domain CB4_03001 PF00270 DEAD/DEAH box helicase CB4_03002 PF00994 Probable molybdopterin binding domain CB4_03002 PF02464 Competence-damaged protein CB4_03002 PF18146 Damage-inducible protein CinA KH domain CB4_03003 PF01066 CDP-alcohol phosphatidyltransferase CB4_03004 PF00919 Uncharacterized protein family UPF0004 CB4_03004 PF18693 TRAM domain CB4_03004 PF04055 Radical SAM superfamily CB4_03005 PF13464 Domain of unknown function (DUF4115) CB4_03006 PF11868 Protein of unknown function (DUF3388) CB4_03007 PF11588 Protein of unknown function (DUF3243) CB4_03009 PF00675 Insulinase (Peptidase family M16) CB4_03009 PF05193 Peptidase M16 inactive domain CB4_03010 PF05193 Peptidase M16 inactive domain CB4_03016 PF07690 Major Facilitator Superfamily CB4_03018 PF00581 Rhodanese-like domain CB4_03019 PF00391 PEP-utilising enzyme, mobile domain CB4_03019 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CB4_03019 PF02896 PEP-utilising enzyme, TIM barrel domain CB4_03020 PF02163 Peptidase family M50 CB4_03022 PF07261 Replication initiation and membrane attachment CB4_03023 PF02743 Cache domain CB4_03023 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03023 PF00672 HAMP domain CB4_03024 PF00155 Aminotransferase class I and II CB4_03025 PF01434 Peptidase family M41 CB4_03025 PF06480 FtsH Extracellular CB4_03025 PF17862 AAA+ lid domain CB4_03025 PF00004 ATPase family associated with various cellular activities (AAA) CB4_03029 PF01979 Amidohydrolase family CB4_03030 PF02629 CoA binding domain CB4_03030 PF06971 Putative DNA-binding protein N-terminus CB4_03031 PF04851 Type III restriction enzyme, res subunit CB4_03031 PF00929 Exonuclease CB4_03031 PF13307 Helicase C-terminal domain CB4_03034 PF02261 Aspartate decarboxylase CB4_03035 PF02569 Pantoate-beta-alanine ligase CB4_03036 PF02548 Ketopantoate hydroxymethyltransferase CB4_03037 PF08279 HTH domain CB4_03037 PF03099 Biotin/lipoate A/B protein ligase family CB4_03037 PF02237 Biotin protein ligase C terminal domain CB4_03038 PF13735 tRNA nucleotidyltransferase domain 2 putative CB4_03038 PF12627 Probable RNA and SrmB- binding site of polymerase A CB4_03038 PF01743 Poly A polymerase head domain CB4_03039 PF00534 Glycosyl transferases group 1 CB4_03039 PF13439 Glycosyltransferase Family 4 CB4_03040 PF02585 GlcNAc-PI de-N-acetylase CB4_03041 PF02142 MGS-like domain CB4_03042 PF05173 Dihydrodipicolinate reductase, C-terminus CB4_03042 PF01113 Dihydrodipicolinate reductase, N-terminus CB4_03043 PF03819 MazG nucleotide pyrophosphohydrolase domain CB4_03044 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CB4_03044 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_03046 PF08281 Sigma-70, region 4 CB4_03046 PF04542 Sigma-70 region 2 CB4_03049 PF01965 DJ-1/PfpI family CB4_03056 PF04542 Sigma-70 region 2 CB4_03056 PF08281 Sigma-70, region 4 CB4_03059 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CB4_03060 PF02153 Prephenate dehydrogenase CB4_03060 PF01842 ACT domain CB4_03061 PF00155 Aminotransferase class I and II CB4_03062 PF00290 Tryptophan synthase alpha chain CB4_03063 PF00291 Pyridoxal-phosphate dependent enzyme CB4_03064 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CB4_03065 PF00218 Indole-3-glycerol phosphate synthase CB4_03066 PF02885 Glycosyl transferase family, helical bundle domain CB4_03066 PF00591 Glycosyl transferase family, a/b domain CB4_03069 PF01761 3-dehydroquinate synthase CB4_03070 PF01264 Chorismate synthase CB4_03071 PF01739 CheR methyltransferase, SAM binding domain CB4_03071 PF03705 CheR methyltransferase, all-alpha domain CB4_03072 PF00334 Nucleoside diphosphate kinase CB4_03073 PF00348 Polyprenyl synthetase CB4_03076 PF01040 UbiA prenyltransferase family CB4_03077 PF01209 ubiE/COQ5 methyltransferase family CB4_03078 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 CB4_03079 PF02081 Tryptophan RNA-binding attenuator protein CB4_03081 PF00216 Bacterial DNA-binding protein CB4_03082 PF09547 Stage IV sporulation protein A (spore_IV_A) CB4_03086 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CB4_03086 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CB4_03087 PF02660 Glycerol-3-phosphate acyltransferase CB4_03088 PF01926 50S ribosome-binding GTPase CB4_03088 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CB4_03090 PF14045 YIEGIA protein CB4_03092 PF00575 S1 RNA binding domain CB4_03093 PF01553 Acyltransferase CB4_03094 PF02224 Cytidylate kinase CB4_03096 PF14620 YpeB sporulation CB4_03096 PF03413 Peptidase propeptide and YPEB domain CB4_03098 PF13367 PrsW family intramembrane metalloprotease CB4_03100 PF00710 Asparaginase, N-terminal CB4_03100 PF17763 Glutaminase/Asparaginase C-terminal domain CB4_03102 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CB4_03102 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CB4_03103 PF05389 Negative regulator of genetic competence (MecA) CB4_03104 PF04607 Region found in RelA / SpoT proteins CB4_03105 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CB4_03105 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CB4_03107 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_03111 PF00270 DEAD/DEAH box helicase CB4_03111 PF00271 Helicase conserved C-terminal domain CB4_03112 PF14493 Helix-turn-helix domain CB4_03114 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_03119 PF13539 D-alanyl-D-alanine carboxypeptidase CB4_03145 PF03354 Phage Terminase CB4_03149 PF04232 Stage V sporulation protein S (SpoVS) CB4_03172 PF13462 Thioredoxin CB4_03174 PF05901 Excalibur calcium-binding domain CB4_03174 PF00565 Staphylococcal nuclease homologue CB4_03177 PF03424 Carbohydrate binding domain (family 17/28) CB4_03177 PF00150 Cellulase (glycosyl hydrolase family 5) CB4_03177 PF00395 S-layer homology domain CB4_03179 PF14659 Phage integrase, N-terminal SAM-like domain CB4_03179 PF00589 Phage integrase family CB4_03180 PF13302 Acetyltransferase (GNAT) domain CB4_03183 PF00005 ABC transporter CB4_03186 PF00196 Bacterial regulatory proteins, luxR family CB4_03186 PF00072 Response regulator receiver domain CB4_03187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03187 PF00512 His Kinase A (phospho-acceptor) domain CB4_03189 PF00324 Amino acid permease CB4_03197 PF13443 Cro/C1-type HTH DNA-binding domain CB4_03198 PF11188 Protein of unknown function (DUF2975) CB4_03208 PF08000 Bacterial PH domain CB4_03212 PF12690 Intracellular proteinase inhibitor CB4_03213 PF01544 CorA-like Mg2+ transporter protein CB4_03215 PF00719 Inorganic pyrophosphatase CB4_03218 PF01842 ACT domain CB4_03218 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CB4_03218 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CB4_03219 PF13419 Haloacid dehalogenase-like hydrolase CB4_03220 PF00106 short chain dehydrogenase CB4_03221 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CB4_03222 PF03061 Thioesterase superfamily CB4_03223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03223 PF00672 HAMP domain CB4_03223 PF00989 PAS fold CB4_03223 PF18698 Histidine kinase sensor domain CB4_03223 PF00512 His Kinase A (phospho-acceptor) domain CB4_03224 PF00486 Transcriptional regulatory protein, C terminal CB4_03224 PF00072 Response regulator receiver domain CB4_03227 PF00271 Helicase conserved C-terminal domain CB4_03227 PF00270 DEAD/DEAH box helicase CB4_03228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03228 PF18698 Histidine kinase sensor domain CB4_03228 PF00512 His Kinase A (phospho-acceptor) domain CB4_03228 PF00989 PAS fold CB4_03228 PF00672 HAMP domain CB4_03229 PF00072 Response regulator receiver domain CB4_03229 PF00486 Transcriptional regulatory protein, C terminal CB4_03232 PF01578 Cytochrome C assembly protein CB4_03233 PF05140 ResB-like family CB4_03234 PF00578 AhpC/TSA family CB4_03236 PF00849 RNA pseudouridylate synthase CB4_03236 PF01479 S4 domain CB4_03237 PF07670 Nucleoside recognition CB4_03238 PF07670 Nucleoside recognition CB4_03239 PF00768 D-alanyl-D-alanine carboxypeptidase CB4_03239 PF07943 Penicillin-binding protein 5, C-terminal domain CB4_03240 PF01566 Natural resistance-associated macrophage protein CB4_03243 PF04079 Segregation and condensation complex subunit ScpB CB4_03244 PF02616 Segregation and condensation protein ScpA CB4_03245 PF02163 Peptidase family M50 CB4_03246 PF00885 6,7-dimethyl-8-ribityllumazine synthase CB4_03247 PF00925 GTP cyclohydrolase II CB4_03247 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CB4_03248 PF00677 Lumazine binding domain CB4_03249 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CB4_03249 PF01872 RibD C-terminal domain CB4_03250 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CB4_03252 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03252 PF00672 HAMP domain CB4_03252 PF05227 CHASE3 domain CB4_03254 PF00271 Helicase conserved C-terminal domain CB4_03254 PF08494 DEAD/H associated CB4_03254 PF00270 DEAD/DEAH box helicase CB4_03259 PF00294 pfkB family carbohydrate kinase CB4_03260 PF02837 Glycosyl hydrolases family 2, sugar binding domain CB4_03260 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CB4_03260 PF00703 Glycosyl hydrolases family 2 CB4_03260 PF16353 Domain of unknown function(DUF4981) CB4_03260 PF02929 Beta galactosidase small chain CB4_03261 PF01979 Amidohydrolase family CB4_03262 PF01266 FAD dependent oxidoreductase CB4_03263 PF08943 CsiD CB4_03265 PF00171 Aldehyde dehydrogenase family CB4_03266 PF00202 Aminotransferase class-III CB4_03267 PF00158 Sigma-54 interaction domain CB4_03269 PF00528 Binding-protein-dependent transport system inner membrane component CB4_03271 PF00005 ABC transporter CB4_03271 PF08402 TOBE domain CB4_03272 PF01230 HIT domain CB4_03273 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CB4_03274 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CB4_03274 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CB4_03275 PF14097 Stage V sporulation protein AE1 CB4_03276 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CB4_03277 PF07451 Stage V sporulation protein AD (SpoVAD) CB4_03278 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CB4_03279 PF13782 Stage V sporulation protein AB CB4_03280 PF12164 Stage V sporulation protein AA CB4_03281 PF04542 Sigma-70 region 2 CB4_03281 PF04539 Sigma-70 region 3 CB4_03281 PF04545 Sigma-70, region 4 CB4_03282 PF13581 Histidine kinase-like ATPase domain CB4_03283 PF01740 STAS domain CB4_03284 PF00768 D-alanyl-D-alanine carboxypeptidase CB4_03284 PF07943 Penicillin-binding protein 5, C-terminal domain CB4_03286 PF03062 MBOAT, membrane-bound O-acyltransferase family CB4_03290 PF02567 Phenazine biosynthesis-like protein CB4_03291 PF00005 ABC transporter CB4_03291 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CB4_03292 PF00005 ABC transporter CB4_03292 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CB4_03293 PF00528 Binding-protein-dependent transport system inner membrane component CB4_03293 PF12911 N-terminal TM domain of oligopeptide transport permease C CB4_03294 PF00528 Binding-protein-dependent transport system inner membrane component CB4_03295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CB4_03296 PF16591 Helical bimodular sensor domain CB4_03296 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03296 PF00672 HAMP domain CB4_03298 PF01048 Phosphorylase superfamily CB4_03299 PF01048 Phosphorylase superfamily CB4_03300 PF01676 Metalloenzyme superfamily CB4_03301 PF02899 Phage integrase, N-terminal SAM-like domain CB4_03301 PF00589 Phage integrase family CB4_03305 PF01475 Ferric uptake regulator family CB4_03306 PF01944 Stage II sporulation protein M CB4_03307 PF00293 NUDIX domain CB4_03310 PF01546 Peptidase family M20/M25/M40 CB4_03310 PF07687 Peptidase dimerisation domain CB4_03312 PF01039 Carboxyl transferase domain CB4_03315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CB4_03315 PF02817 e3 binding domain CB4_03315 PF00364 Biotin-requiring enzyme CB4_03316 PF02780 Transketolase, C-terminal domain CB4_03316 PF02779 Transketolase, pyrimidine binding domain CB4_03317 PF00676 Dehydrogenase E1 component CB4_03318 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_03318 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CB4_03319 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CB4_03319 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CB4_03320 PF02954 Bacterial regulatory protein, Fis family CB4_03320 PF00158 Sigma-54 interaction domain CB4_03320 PF00989 PAS fold CB4_03322 PF00535 Glycosyl transferase family 2 CB4_03325 PF01554 MatE CB4_03329 PF02743 Cache domain CB4_03329 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03329 PF00672 HAMP domain CB4_03330 PF07730 Histidine kinase CB4_03331 PF00072 Response regulator receiver domain CB4_03331 PF00196 Bacterial regulatory proteins, luxR family CB4_03334 PF00571 CBS domain CB4_03334 PF03471 Transporter associated domain CB4_03334 PF01595 Cyclin M transmembrane N-terminal domain CB4_03335 PF04298 Putative neutral zinc metallopeptidase CB4_03337 PF01975 Survival protein SurE CB4_03340 PF08281 Sigma-70, region 4 CB4_03340 PF04542 Sigma-70 region 2 CB4_03341 PF01569 PAP2 superfamily CB4_03342 PF01522 Polysaccharide deacetylase CB4_03346 PF10502 Signal peptidase, peptidase S26 CB4_03347 PF00171 Aldehyde dehydrogenase family CB4_03350 PF00491 Arginase family CB4_03351 PF07285 Protein of unknown function (DUF1444) CB4_03356 PF00579 tRNA synthetases class I (W and Y) CB4_03363 PF01865 Protein of unknown function DUF47 CB4_03364 PF01384 Phosphate transporter family CB4_03367 PF01152 Bacterial-like globin CB4_03369 PF01464 Transglycosylase SLT domain CB4_03370 PF00501 AMP-binding enzyme CB4_03370 PF13193 AMP-binding enzyme C-terminal domain CB4_03372 PF01329 Pterin 4 alpha carbinolamine dehydratase CB4_03373 PF00512 His Kinase A (phospho-acceptor) domain CB4_03373 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CB4_03373 PF00672 HAMP domain CB4_03373 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03373 PF00072 Response regulator receiver domain CB4_03373 PF01627 Hpt domain CB4_03374 PF00072 Response regulator receiver domain CB4_03375 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CB4_03375 PF00072 Response regulator receiver domain CB4_03375 PF01627 Hpt domain CB4_03375 PF00512 His Kinase A (phospho-acceptor) domain CB4_03375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03375 PF00672 HAMP domain CB4_03376 PF02608 ABC transporter substrate-binding protein PnrA-like CB4_03377 PF00158 Sigma-54 interaction domain CB4_03377 PF00072 Response regulator receiver domain CB4_03377 PF02954 Bacterial regulatory protein, Fis family CB4_03379 PF00440 Bacterial regulatory proteins, tetR family CB4_03379 PF16295 Tetracyclin repressor-like, C-terminal domain CB4_03385 PF06491 Disulphide isomerase CB4_03386 PF01522 Polysaccharide deacetylase CB4_03388 PF00005 ABC transporter CB4_03390 PF01476 LysM domain CB4_03390 PF00877 NlpC/P60 family CB4_03391 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CB4_03391 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CB4_03391 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CB4_03391 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CB4_03392 PF00365 Phosphofructokinase CB4_03393 PF00480 ROK family CB4_03396 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03399 PF01740 STAS domain CB4_03400 PF13426 PAS domain CB4_03400 PF07228 Stage II sporulation protein E (SpoIIE) CB4_03401 PF07690 Major Facilitator Superfamily CB4_03403 PF01144 Coenzyme A transferase CB4_03404 PF01144 Coenzyme A transferase CB4_03406 PF00072 Response regulator receiver domain CB4_03406 PF02954 Bacterial regulatory protein, Fis family CB4_03406 PF00158 Sigma-54 interaction domain CB4_03409 PF05163 DinB family CB4_03412 PF00583 Acetyltransferase (GNAT) family CB4_03416 PF02653 Branched-chain amino acid transport system / permease component CB4_03418 PF00849 RNA pseudouridylate synthase CB4_03419 PF00364 Biotin-requiring enzyme CB4_03419 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CB4_03419 PF00682 HMGL-like CB4_03419 PF02436 Conserved carboxylase domain CB4_03419 PF02785 Biotin carboxylase C-terminal domain CB4_03419 PF00289 Biotin carboxylase, N-terminal domain CB4_03423 PF00589 Phage integrase family CB4_03423 PF02899 Phage integrase, N-terminal SAM-like domain CB4_03425 PF09579 Sporulation protein YtfJ (Spore_YtfJ) CB4_03428 PF01144 Coenzyme A transferase CB4_03429 PF01144 Coenzyme A transferase CB4_03430 PF13520 Amino acid permease CB4_03431 PF13193 AMP-binding enzyme C-terminal domain CB4_03431 PF00501 AMP-binding enzyme CB4_03432 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_03433 PF03741 Integral membrane protein TerC family CB4_03434 PF13545 Crp-like helix-turn-helix domain CB4_03434 PF00027 Cyclic nucleotide-binding domain CB4_03435 PF03475 3-alpha domain CB4_03435 PF03473 MOSC domain CB4_03436 PF00072 Response regulator receiver domain CB4_03436 PF00486 Transcriptional regulatory protein, C terminal CB4_03437 PF00512 His Kinase A (phospho-acceptor) domain CB4_03437 PF00672 HAMP domain CB4_03437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03437 PF13426 PAS domain CB4_03438 PF00990 Diguanylate cyclase, GGDEF domain CB4_03438 PF00072 Response regulator receiver domain CB4_03439 PF00551 Formyl transferase CB4_03439 PF01842 ACT domain CB4_03440 PF01227 GTP cyclohydrolase I CB4_03443 PF00909 Ammonium Transporter Family CB4_03446 PF01152 Bacterial-like globin CB4_03448 PF01575 MaoC like domain CB4_03453 PF00561 alpha/beta hydrolase fold CB4_03454 PF02926 THUMP domain CB4_03454 PF02568 Thiamine biosynthesis protein (ThiI) CB4_03455 PF00266 Aminotransferase class-V CB4_03459 PF07687 Peptidase dimerisation domain CB4_03459 PF01546 Peptidase family M20/M25/M40 CB4_03461 PF00106 short chain dehydrogenase CB4_03462 PF04070 Domain of unknown function (DUF378) CB4_03465 PF01609 Transposase DDE domain CB4_03471 PF01012 Electron transfer flavoprotein domain CB4_03471 PF00766 Electron transfer flavoprotein FAD-binding domain CB4_03472 PF01012 Electron transfer flavoprotein domain CB4_03474 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CB4_03475 PF17848 Acetyl-coA carboxylase zinc finger domain CB4_03475 PF01039 Carboxyl transferase domain CB4_03476 PF00465 Iron-containing alcohol dehydrogenase CB4_03482 PF04341 Protein of unknown function, DUF485 CB4_03483 PF00474 Sodium:solute symporter family CB4_03484 PF06160 Septation ring formation regulator, EzrA CB4_03485 PF00440 Bacterial regulatory proteins, tetR family CB4_03488 PF00990 Diguanylate cyclase, GGDEF domain CB4_03489 PF00300 Histidine phosphatase superfamily (branch 1) CB4_03490 PF00291 Pyridoxal-phosphate dependent enzyme CB4_03491 PF00892 EamA-like transporter family CB4_03492 PF01479 S4 domain CB4_03492 PF00163 Ribosomal protein S4/S9 N-terminal domain CB4_03493 PF13411 MerR HTH family regulatory protein CB4_03494 PF07690 Major Facilitator Superfamily CB4_03495 PF11849 Domain of unknown function (DUF3369) CB4_03496 PF05384 Sensor protein DegS CB4_03496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03496 PF07730 Histidine kinase CB4_03497 PF00196 Bacterial regulatory proteins, luxR family CB4_03497 PF00072 Response regulator receiver domain CB4_03498 PF00672 HAMP domain CB4_03498 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03498 PF02743 Cache domain CB4_03499 PF07730 Histidine kinase CB4_03499 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03500 PF00579 tRNA synthetases class I (W and Y) CB4_03500 PF01479 S4 domain CB4_03501 PF00912 Transglycosylase CB4_03501 PF00905 Penicillin binding protein transpeptidase domain CB4_03502 PF13193 AMP-binding enzyme C-terminal domain CB4_03502 PF00501 AMP-binding enzyme CB4_03503 PF00583 Acetyltransferase (GNAT) family CB4_03504 PF00571 CBS domain CB4_03505 PF00850 Histone deacetylase domain CB4_03506 PF01048 Phosphorylase superfamily CB4_03507 PF00356 Bacterial regulatory proteins, lacI family CB4_03508 PF00793 DAHP synthetase I family CB4_03508 PF01817 Chorismate mutase type II CB4_03509 PF02491 SHS2 domain inserted in FTSA CB4_03514 PF11009 Protein of unknown function (DUF2847) CB4_03515 PF00180 Isocitrate/isopropylmalate dehydrogenase CB4_03519 PF13180 PDZ domain CB4_03520 PF03144 Elongation factor Tu domain 2 CB4_03520 PF16658 Class II release factor RF3, C-terminal domain CB4_03520 PF00009 Elongation factor Tu GTP binding domain CB4_03522 PF00571 CBS domain CB4_03523 PF01098 Cell cycle protein CB4_03524 PF01098 Cell cycle protein CB4_03525 PF01769 Divalent cation transporter CB4_03525 PF03448 MgtE intracellular N domain CB4_03525 PF00571 CBS domain CB4_03526 PF02308 MgtC family CB4_03527 PF00689 Cation transporting ATPase, C-terminus CB4_03527 PF00690 Cation transporter/ATPase, N-terminus CB4_03533 PF12652 CotJB protein CB4_03534 PF05067 Manganese containing catalase CB4_03535 PF00881 Nitroreductase family CB4_03536 PF03838 Recombination protein U CB4_03537 PF03745 Domain of unknown function (DUF309) CB4_03538 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_03553 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CB4_03557 PF00005 ABC transporter CB4_03558 PF12399 Branched-chain amino acid ATP-binding cassette transporter CB4_03558 PF00005 ABC transporter CB4_03560 PF02653 Branched-chain amino acid transport system / permease component CB4_03562 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CB4_03563 PF00171 Aldehyde dehydrogenase family CB4_03564 PF00701 Dihydrodipicolinate synthetase family CB4_03565 PF00392 Bacterial regulatory proteins, gntR family CB4_03567 PF01967 MoaC family CB4_03568 PF06463 Molybdenum Cofactor Synthesis C CB4_03568 PF04055 Radical SAM superfamily CB4_03569 PF00899 ThiF family CB4_03574 PF09397 Ftsk gamma domain CB4_03574 PF17854 FtsK alpha domain CB4_03574 PF01580 FtsK/SpoIIIE family CB4_03579 PF00920 Dehydratase family CB4_03580 PF01476 LysM domain CB4_03580 PF03734 L,D-transpeptidase catalytic domain CB4_03581 PF00892 EamA-like transporter family CB4_03583 PF07670 Nucleoside recognition CB4_03583 PF02421 Ferrous iron transport protein B CB4_03583 PF17910 FeoB cytosolic helical domain CB4_03583 PF07664 Ferrous iron transport protein B C terminus CB4_03585 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CB4_03585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CB4_03587 PF13533 Biotin-lipoyl like CB4_03588 PF00005 ABC transporter CB4_03590 PF00440 Bacterial regulatory proteins, tetR family CB4_03590 PF08359 YsiA-like protein, C-terminal region CB4_03591 PF00849 RNA pseudouridylate synthase CB4_03591 PF01479 S4 domain CB4_03593 PF00912 Transglycosylase CB4_03593 PF00905 Penicillin binding protein transpeptidase domain CB4_03595 PF14489 QueF-like protein CB4_03596 PF06508 Queuosine biosynthesis protein QueC CB4_03597 PF04055 Radical SAM superfamily CB4_03598 PF01242 6-pyruvoyl tetrahydropterin synthase CB4_03599 PF00459 Inositol monophosphatase family CB4_03600 PF13649 Methyltransferase domain CB4_03603 PF03741 Integral membrane protein TerC family CB4_03605 PF00271 Helicase conserved C-terminal domain CB4_03605 PF00270 DEAD/DEAH box helicase CB4_03606 PF02581 Thiamine monophosphate synthase CB4_03607 PF01266 FAD dependent oxidoreductase CB4_03608 PF02597 ThiS family CB4_03609 PF05690 Thiazole biosynthesis protein ThiG CB4_03610 PF00990 Diguanylate cyclase, GGDEF domain CB4_03610 PF03707 Bacterial signalling protein N terminal repeat CB4_03610 PF00563 EAL domain CB4_03611 PF08502 LeuA allosteric (dimerisation) domain CB4_03611 PF00682 HMGL-like CB4_03614 PF00083 Sugar (and other) transporter CB4_03614 PF07690 Major Facilitator Superfamily CB4_03617 PF04055 Radical SAM superfamily CB4_03617 PF16199 Radical_SAM C-terminal domain CB4_03618 PF04284 Protein of unknown function (DUF441) CB4_03619 PF00270 DEAD/DEAH box helicase CB4_03619 PF00271 Helicase conserved C-terminal domain CB4_03622 PF00313 'Cold-shock' DNA-binding domain CB4_03623 PF12146 Serine aminopeptidase, S33 CB4_03625 PF01293 Phosphoenolpyruvate carboxykinase CB4_03627 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_03627 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_03627 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_03628 PF02515 CoA-transferase family III CB4_03630 PF00534 Glycosyl transferases group 1 CB4_03630 PF13439 Glycosyltransferase Family 4 CB4_03632 PF01609 Transposase DDE domain CB4_03635 PF00107 Zinc-binding dehydrogenase CB4_03635 PF08240 Alcohol dehydrogenase GroES-like domain CB4_03636 PF06942 GlpM protein CB4_03638 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_03638 PF03466 LysR substrate binding domain CB4_03639 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03639 PF00672 HAMP domain CB4_03639 PF02743 Cache domain CB4_03640 PF01522 Polysaccharide deacetylase CB4_03642 PF00881 Nitroreductase family CB4_03643 PF00672 HAMP domain CB4_03643 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03647 PF02589 LUD domain CB4_03648 PF11870 Domain of unknown function (DUF3390) CB4_03648 PF13183 4Fe-4S dicluster domain CB4_03648 PF02589 LUD domain CB4_03649 PF02754 Cysteine-rich domain CB4_03651 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_03652 PF00106 short chain dehydrogenase CB4_03653 PF00501 AMP-binding enzyme CB4_03653 PF13193 AMP-binding enzyme C-terminal domain CB4_03654 PF03180 NLPA lipoprotein CB4_03655 PF00672 HAMP domain CB4_03655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03655 PF02743 Cache domain CB4_03657 PF00501 AMP-binding enzyme CB4_03657 PF14535 AMP-binding enzyme C-terminal domain CB4_03658 PF00378 Enoyl-CoA hydratase/isomerase CB4_03662 PF00378 Enoyl-CoA hydratase/isomerase CB4_03663 PF00378 Enoyl-CoA hydratase/isomerase CB4_03664 PF03061 Thioesterase superfamily CB4_03667 PF03061 Thioesterase superfamily CB4_03670 PF13667 ThiC-associated domain CB4_03670 PF01964 Radical SAM ThiC family CB4_03671 PF13407 Periplasmic binding protein domain CB4_03672 PF02653 Branched-chain amino acid transport system / permease component CB4_03673 PF00005 ABC transporter CB4_03674 PF05025 RbsD / FucU transport protein family CB4_03675 PF00294 pfkB family carbohydrate kinase CB4_03676 PF00356 Bacterial regulatory proteins, lacI family CB4_03681 PF02666 Phosphatidylserine decarboxylase CB4_03684 PF13380 CoA binding domain CB4_03686 PF00453 Ribosomal protein L20 CB4_03687 PF01632 Ribosomal protein L35 CB4_03688 PF05198 Translation initiation factor IF-3, N-terminal domain CB4_03688 PF00707 Translation initiation factor IF-3, C-terminal domain CB4_03689 PF05231 MASE1 CB4_03689 PF00563 EAL domain CB4_03690 PF00672 HAMP domain CB4_03690 PF02743 Cache domain CB4_03690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03695 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CB4_03695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CB4_03695 PF02824 TGS domain CB4_03695 PF03129 Anticodon binding domain CB4_03698 PF12857 TOBE-like domain CB4_03698 PF00005 ABC transporter CB4_03701 PF10055 Uncharacterized small protein (DUF2292) CB4_03703 PF04055 Radical SAM superfamily CB4_03705 PF07319 Primosomal protein DnaI N-terminus CB4_03705 PF01695 IstB-like ATP binding protein CB4_03706 PF07261 Replication initiation and membrane attachment CB4_03707 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CB4_03707 PF00753 Metallo-beta-lactamase superfamily CB4_03707 PF10996 Beta-Casp domain CB4_03708 PF03477 ATP cone domain CB4_03709 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CB4_03709 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CB4_03710 PF01464 Transglycosylase SLT domain CB4_03710 PF01551 Peptidase family M23 CB4_03710 PF10145 Phage-related minor tail protein CB4_03711 PF01121 Dephospho-CoA kinase CB4_03712 PF02659 Putative manganese efflux pump CB4_03713 PF06827 Zinc finger found in FPG and IleRS CB4_03713 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CB4_03713 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CB4_03714 PF01367 5'-3' exonuclease, C-terminal SAM fold CB4_03714 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CB4_03714 PF00476 DNA polymerase family A CB4_03715 PF01145 SPFH domain / Band 7 family CB4_03716 PF00989 PAS fold CB4_03716 PF00512 His Kinase A (phospho-acceptor) domain CB4_03716 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03716 PF16736 Single Cache-like CB4_03717 PF00486 Transcriptional regulatory protein, C terminal CB4_03717 PF00072 Response regulator receiver domain CB4_03718 PF00056 lactate/malate dehydrogenase, NAD binding domain CB4_03718 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CB4_03719 PF00180 Isocitrate/isopropylmalate dehydrogenase CB4_03720 PF00285 Citrate synthase, C-terminal domain CB4_03721 PF01594 AI-2E family transporter CB4_03722 PF04186 FxsA cytoplasmic membrane protein CB4_03723 PF03061 Thioesterase superfamily CB4_03724 PF00391 PEP-utilising enzyme, mobile domain CB4_03724 PF00224 Pyruvate kinase, barrel domain CB4_03724 PF02887 Pyruvate kinase, alpha/beta domain CB4_03725 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CB4_03726 PF01039 Carboxyl transferase domain CB4_03726 PF17848 Acetyl-coA carboxylase zinc finger domain CB4_03727 PF07729 FCD domain CB4_03727 PF00392 Bacterial regulatory proteins, gntR family CB4_03728 PF00390 Malic enzyme, N-terminal domain CB4_03728 PF03949 Malic enzyme, NAD binding domain CB4_03729 PF01336 OB-fold nucleic acid binding domain CB4_03729 PF07733 Bacterial DNA polymerase III alpha NTPase domain CB4_03729 PF14579 Helix-hairpin-helix motif CB4_03729 PF02811 PHP domain CB4_03729 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CB4_03733 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CB4_03733 PF13378 Enolase C-terminal domain-like CB4_03734 PF04235 Protein of unknown function (DUF418) CB4_03735 PF02678 Pirin CB4_03735 PF17954 Quercetinase C-terminal cupin domain CB4_03736 PF01047 MarR family CB4_03738 PF00072 Response regulator receiver domain CB4_03738 PF01966 HD domain CB4_03740 PF00392 Bacterial regulatory proteins, gntR family CB4_03740 PF07085 DRTGG domain CB4_03740 PF00571 CBS domain CB4_03740 PF03061 Thioesterase superfamily CB4_03742 PF02390 Putative methyltransferase CB4_03744 PF14398 YheC/D like ATP-grasp CB4_03745 PF14398 YheC/D like ATP-grasp CB4_03746 PF14398 YheC/D like ATP-grasp CB4_03750 PF03707 Bacterial signalling protein N terminal repeat CB4_03750 PF00990 Diguanylate cyclase, GGDEF domain CB4_03750 PF00563 EAL domain CB4_03751 PF00155 Aminotransferase class I and II CB4_03753 PF04463 Protein of unknown function (DUF523) CB4_03754 PF14256 YwiC-like protein CB4_03755 PF02583 Metal-sensitive transcriptional repressor CB4_03765 PF00211 Adenylate and Guanylate cyclase catalytic domain CB4_03765 PF00072 Response regulator receiver domain CB4_03766 PF00027 Cyclic nucleotide-binding domain CB4_03766 PF07885 Ion channel CB4_03767 PF13358 DDE superfamily endonuclease CB4_03770 PF07885 Ion channel CB4_03770 PF00027 Cyclic nucleotide-binding domain CB4_03772 PF00989 PAS fold CB4_03772 PF13426 PAS domain CB4_03772 PF13188 PAS domain CB4_03772 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03772 PF00512 His Kinase A (phospho-acceptor) domain CB4_03773 PF06865 Pyrimidine/purine nucleoside phosphorylase CB4_03774 PF02073 Thermophilic metalloprotease (M29) CB4_03775 PF02872 5'-nucleotidase, C-terminal domain CB4_03775 PF00149 Calcineurin-like phosphoesterase CB4_03776 PF02872 5'-nucleotidase, C-terminal domain CB4_03776 PF00149 Calcineurin-like phosphoesterase CB4_03777 PF00293 NUDIX domain CB4_03778 PF00355 Rieske [2Fe-2S] domain CB4_03778 PF01266 FAD dependent oxidoreductase CB4_03791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03791 PF00512 His Kinase A (phospho-acceptor) domain CB4_03791 PF00989 PAS fold CB4_03791 PF13426 PAS domain CB4_03791 PF13188 PAS domain CB4_03793 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CB4_03795 PF02018 Carbohydrate binding domain CB4_03795 PF00331 Glycosyl hydrolase family 10 CB4_03795 PF06452 Carbohydrate family 9 binding domain-like CB4_03795 PF00395 S-layer homology domain CB4_03796 PF04293 SpoVR like protein CB4_03803 PF13408 Recombinase zinc beta ribbon domain CB4_03803 PF00239 Resolvase, N terminal domain CB4_03803 PF07508 Recombinase CB4_03804 PF00128 Alpha amylase, catalytic domain CB4_03804 PF00395 S-layer homology domain CB4_03804 PF02903 Alpha amylase, N-terminal ig-like domain CB4_03808 PF04293 SpoVR like protein CB4_03813 PF07561 Domain of Unknown Function (DUF1540) CB4_03816 PF04542 Sigma-70 region 2 CB4_03816 PF04545 Sigma-70, region 4 CB4_03817 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03817 PF02743 Cache domain CB4_03817 PF00672 HAMP domain CB4_03820 PF04285 Protein of unknown function (DUF444) CB4_03821 PF08298 PrkA AAA domain CB4_03821 PF06798 PrkA serine protein kinase C-terminal domain CB4_03824 PF03180 NLPA lipoprotein CB4_03825 PF13419 Haloacid dehalogenase-like hydrolase CB4_03826 PF00588 SpoU rRNA Methylase family CB4_03827 PF12671 Putative amidase domain CB4_03828 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CB4_03828 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CB4_03829 PF08331 Domain of unknown function (DUF1730) CB4_03830 PF00075 RNase H CB4_03831 PF07690 Major Facilitator Superfamily CB4_03832 PF00860 Permease family CB4_03833 PF03167 Uracil DNA glycosylase superfamily CB4_03834 PF00501 AMP-binding enzyme CB4_03834 PF13193 AMP-binding enzyme C-terminal domain CB4_03834 PF16177 Acetyl-coenzyme A synthetase N-terminus CB4_03855 PF14540 Nucleotidyltransferase-like CB4_03855 PF18576 Helix-turn-helix domain CB4_03856 PF01475 Ferric uptake regulator family CB4_03864 PF01923 Cobalamin adenosyltransferase CB4_03865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CB4_03865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CB4_03866 PF00578 AhpC/TSA family CB4_03881 PF00005 ABC transporter CB4_03882 PF00202 Aminotransferase class-III CB4_03883 PF04898 Glutamate synthase central domain CB4_03883 PF01493 GXGXG motif CB4_03883 PF01645 Conserved region in glutamate synthase CB4_03883 PF00310 Glutamine amidotransferases class-II CB4_03884 PF06081 Aromatic acid exporter family member 1 CB4_03885 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CB4_03885 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CB4_03887 PF00596 Class II Aldolase and Adducin N-terminal domain CB4_03888 PF03079 ARD/ARD' family CB4_03889 PF07732 Multicopper oxidase CB4_03889 PF07731 Multicopper oxidase CB4_03889 PF00394 Multicopper oxidase CB4_03892 PF00392 Bacterial regulatory proteins, gntR family CB4_03893 PF00005 ABC transporter CB4_03894 PF00749 tRNA synthetases class I (E and Q), catalytic domain CB4_03894 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CB4_03895 PF00005 ABC transporter CB4_03895 PF00664 ABC transporter transmembrane region CB4_03896 PF04167 Protein of unknown function (DUF402) CB4_03902 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CB4_03902 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CB4_03904 PF01027 Inhibitor of apoptosis-promoting Bax1 CB4_03906 PF00633 Helix-hairpin-helix motif CB4_03906 PF00730 HhH-GPD superfamily base excision DNA repair protein CB4_03906 PF14815 NUDIX domain CB4_03908 PF04307 LexA-binding, inner membrane-associated putative hydrolase CB4_03911 PF02525 Flavodoxin-like fold CB4_03912 PF01554 MatE CB4_03914 PF01747 ATP-sulfurylase CB4_03914 PF14306 PUA-like domain CB4_03915 PF01507 Phosphoadenosine phosphosulfate reductase family CB4_03916 PF01384 Phosphate transporter family CB4_03918 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CB4_03918 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CB4_03919 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_03920 PF00202 Aminotransferase class-III CB4_03921 PF00171 Aldehyde dehydrogenase family CB4_03922 PF02954 Bacterial regulatory protein, Fis family CB4_03922 PF00989 PAS fold CB4_03922 PF00158 Sigma-54 interaction domain CB4_03924 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03924 PF00672 HAMP domain CB4_03924 PF02743 Cache domain CB4_03928 PF03845 Spore germination protein CB4_03929 PF03323 Bacillus/Clostridium GerA spore germination protein CB4_03933 PF01066 CDP-alcohol phosphatidyltransferase CB4_03934 PF01479 S4 domain CB4_03934 PF00849 RNA pseudouridylate synthase CB4_03936 PF07833 Copper amine oxidase N-terminal domain CB4_03937 PF00072 Response regulator receiver domain CB4_03942 PF01966 HD domain CB4_03944 PF00535 Glycosyl transferase family 2 CB4_03945 PF03023 Lipid II flippase MurJ CB4_03947 PF02142 MGS-like domain CB4_03947 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CB4_03947 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CB4_03952 PF00534 Glycosyl transferases group 1 CB4_03956 PF01381 Helix-turn-helix CB4_03956 PF07883 Cupin domain CB4_03959 PF06527 TniQ CB4_03959 PF15978 Tn7-like transposition protein D CB4_03960 PF11426 Tn7 transposition regulator TnsC CB4_03960 PF13401 AAA domain CB4_03961 PF00665 Integrase core domain CB4_03962 PF08721 TnsA endonuclease C terminal CB4_03962 PF08722 TnsA endonuclease N terminal CB4_03966 PF02796 Helix-turn-helix domain of resolvase CB4_03966 PF00239 Resolvase, N terminal domain CB4_03969 PF00176 SNF2 family N-terminal domain CB4_03969 PF00271 Helicase conserved C-terminal domain CB4_03983 PF01938 TRAM domain CB4_03983 PF05958 tRNA (Uracil-5-)-methyltransferase CB4_03984 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03987 PF01545 Cation efflux family CB4_03987 PF16916 Dimerisation domain of Zinc Transporter CB4_03988 PF01022 Bacterial regulatory protein, arsR family CB4_03990 PF00561 alpha/beta hydrolase fold CB4_03991 PF02673 Bacitracin resistance protein BacA CB4_03992 PF00581 Rhodanese-like domain CB4_03993 PF06569 Protein of unknown function (DUF1128) CB4_03994 PF01544 CorA-like Mg2+ transporter protein CB4_03995 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_03995 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CB4_03996 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CB4_03996 PF00364 Biotin-requiring enzyme CB4_03996 PF02817 e3 binding domain CB4_03997 PF02780 Transketolase, C-terminal domain CB4_03997 PF02779 Transketolase, pyrimidine binding domain CB4_03998 PF00676 Dehydrogenase E1 component CB4_03999 PF00672 HAMP domain CB4_03999 PF02743 Cache domain CB4_03999 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_04000 PF00528 Binding-protein-dependent transport system inner membrane component CB4_04001 PF00005 ABC transporter CB4_04001 PF09383 NIL domain CB4_04002 PF00512 His Kinase A (phospho-acceptor) domain CB4_04002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_04002 PF00672 HAMP domain CB4_04005 PF04434 SWIM zinc finger CB4_04006 PF12419 SNF2 Helicase protein CB4_04006 PF00176 SNF2 family N-terminal domain CB4_04006 PF00271 Helicase conserved C-terminal domain CB4_04007 PF00664 ABC transporter transmembrane region CB4_04007 PF00005 ABC transporter CB4_04009 PF13539 D-alanyl-D-alanine carboxypeptidase CB4_04010 PF01435 Peptidase family M48 CB4_04019 PF03061 Thioesterase superfamily CB4_04021 PF00581 Rhodanese-like domain CB4_04023 PF01476 LysM domain CB4_04023 PF00877 NlpC/P60 family CB4_04025 PF00248 Aldo/keto reductase family CB4_04026 PF00881 Nitroreductase family CB4_04027 PF01638 HxlR-like helix-turn-helix CB4_04028 PF01037 Lrp/AsnC ligand binding domain CB4_04029 PF07690 Major Facilitator Superfamily CB4_04030 PF13520 Amino acid permease CB4_04038 PF04397 LytTr DNA-binding domain CB4_04038 PF00072 Response regulator receiver domain CB4_04039 PF06580 Histidine kinase CB4_04039 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_04041 PF13333 Integrase core domain CB4_04041 PF13276 HTH-like domain CB4_04041 PF00665 Integrase core domain CB4_04045 PF01385 Probable transposase CB4_04045 PF12323 Helix-turn-helix domain CB4_04045 PF07282 Putative transposase DNA-binding domain CB4_04068 PF00106 short chain dehydrogenase CB4_04069 PF01177 Asp/Glu/Hydantoin racemase CB4_04074 PF00395 S-layer homology domain CB4_04076 PF00196 Bacterial regulatory proteins, luxR family CB4_04076 PF17874 MalT-like TPR region CB4_04077 PF00589 Phage integrase family CB4_04077 PF14659 Phage integrase, N-terminal SAM-like domain CB4_04078 PF01938 TRAM domain CB4_04078 PF05958 tRNA (Uracil-5-)-methyltransferase CB4_04079 PF00781 Diacylglycerol kinase catalytic domain CB4_04080 PF02754 Cysteine-rich domain CB4_04080 PF13183 4Fe-4S dicluster domain CB4_04081 PF01565 FAD binding domain CB4_04081 PF02913 FAD linked oxidases, C-terminal domain CB4_04082 PF00392 Bacterial regulatory proteins, gntR family CB4_04082 PF07729 FCD domain CB4_04084 PF00625 Guanylate kinase CB4_04087 PF02637 GatB domain CB4_04087 PF02934 GatB/GatE catalytic domain CB4_04088 PF01425 Amidase CB4_04089 PF02686 Glu-tRNAGln amidotransferase C subunit CB4_04090 PF00563 EAL domain CB4_04090 PF01590 GAF domain CB4_04090 PF00990 Diguanylate cyclase, GGDEF domain CB4_04090 PF00360 Phytochrome region CB4_04091 PF01381 Helix-turn-helix CB4_04092 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CB4_04093 PF07681 DoxX CB4_04098 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_04098 PF00672 HAMP domain CB4_04098 PF02743 Cache domain CB4_04099 PF13426 PAS domain CB4_04099 PF07228 Stage II sporulation protein E (SpoIIE) CB4_04102 PF01653 NAD-dependent DNA ligase adenylation domain CB4_04102 PF03120 NAD-dependent DNA ligase OB-fold domain CB4_04102 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CB4_04102 PF12826 Helix-hairpin-helix motif CB4_04102 PF00533 BRCA1 C Terminus (BRCT) domain CB4_04103 PF00580 UvrD/REP helicase N-terminal domain CB4_04103 PF13361 UvrD-like helicase C-terminal domain CB4_04104 PF01884 PcrB family CB4_04105 PF01371 Trp repressor protein CB4_04107 PF00255 Glutathione peroxidase CB4_04110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CB4_04110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CB4_04111 PF00005 ABC transporter CB4_04112 PF00005 ABC transporter CB4_04112 PF12399 Branched-chain amino acid ATP-binding cassette transporter CB4_04113 PF02653 Branched-chain amino acid transport system / permease component CB4_04113 PF11862 Domain of unknown function (DUF3382) CB4_04114 PF02653 Branched-chain amino acid transport system / permease component CB4_04115 PF13458 Periplasmic binding protein CB4_04117 PF02843 Phosphoribosylglycinamide synthetase, C domain CB4_04117 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CB4_04117 PF02844 Phosphoribosylglycinamide synthetase, N domain CB4_04118 PF02142 MGS-like domain CB4_04118 PF01808 AICARFT/IMPCHase bienzyme CB4_04119 PF00551 Formyl transferase CB4_04120 PF02769 AIR synthase related protein, C-terminal domain CB4_04120 PF00586 AIR synthase related protein, N-terminal domain CB4_04121 PF00156 Phosphoribosyl transferase domain CB4_04122 PF02769 AIR synthase related protein, C-terminal domain CB4_04122 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CB4_04122 PF00586 AIR synthase related protein, N-terminal domain CB4_04124 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CB4_04125 PF01259 SAICAR synthetase CB4_04126 PF00206 Lyase CB4_04126 PF10397 Adenylosuccinate lyase C-terminus CB4_04127 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CB4_04127 PF02222 ATP-grasp domain CB4_04128 PF00731 AIR carboxylase CB4_04130 PF00072 Response regulator receiver domain CB4_04131 PF00672 HAMP domain CB4_04131 PF00072 Response regulator receiver domain CB4_04131 PF00512 His Kinase A (phospho-acceptor) domain CB4_04131 PF01627 Hpt domain CB4_04131 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_04131 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CB4_04132 PF00860 Permease family CB4_04133 PF00958 GMP synthase C terminal domain CB4_04133 PF00117 Glutamine amidotransferase class-I CB4_04133 PF02540 NAD synthase CB4_04134 PF00118 TCP-1/cpn60 chaperonin family CB4_04135 PF00166 Chaperonin 10 Kd subunit CB4_04136 PF00375 Sodium:dicarboxylate symporter family CB4_04137 PF00994 Probable molybdopterin binding domain CB4_04138 PF01812 5-formyltetrahydrofolate cyclo-ligase family CB4_04139 PF00005 ABC transporter CB4_04139 PF16326 ABC transporter C-terminal domain CB4_04139 PF12848 ABC transporter CB4_04140 PF16326 ABC transporter C-terminal domain CB4_04140 PF12848 ABC transporter CB4_04140 PF00005 ABC transporter CB4_04142 PF00814 Glycoprotease family CB4_04143 PF02743 Cache domain CB4_04143 PF00672 HAMP domain CB4_04143 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_04144 PF17202 Single cache domain 3 CB4_04144 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_04144 PF00672 HAMP domain CB4_04145 PF00583 Acetyltransferase (GNAT) family CB4_04146 PF00814 Glycoprotease family CB4_04147 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CB4_04148 PF02769 AIR synthase related protein, C-terminal domain CB4_04148 PF00586 AIR synthase related protein, N-terminal domain CB4_04149 PF10263 SprT-like family CB4_04149 PF17283 SprT-like zinc ribbon domain CB4_04152 PF16921 Tex protein YqgF-like domain CB4_04152 PF09371 Tex-like protein N-terminal domain CB4_04152 PF17674 HHH domain CB4_04152 PF00575 S1 RNA binding domain CB4_04153 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CB4_04154 PF01402 Ribbon-helix-helix protein, copG family CB4_04155 PF01168 Alanine racemase, N-terminal domain CB4_04155 PF00842 Alanine racemase, C-terminal domain CB4_04176 PF03853 YjeF-related protein N-terminus CB4_04176 PF01256 Carbohydrate kinase CB4_04177 PF01648 4'-phosphopantetheinyl transferase superfamily CB4_04178 PF01520 N-acetylmuramoyl-L-alanine amidase CB4_04179 PF13677 Membrane MotB of proton-channel complex MotA/MotB CB4_04179 PF00691 OmpA family CB4_04180 PF01618 MotA/TolQ/ExbB proton channel family CB4_04181 PF03070 TENA/THI-4/PQQC family CB4_04182 PF03816 Cell envelope-related transcriptional attenuator domain CB4_04185 PF00535 Glycosyl transferase family 2 CB4_04187 PF00873 AcrB/AcrD/AcrF family CB4_04188 PF02683 Cytochrome C biogenesis protein transmembrane region CB4_04189 PF07228 Stage II sporulation protein E (SpoIIE) CB4_04189 PF13426 PAS domain CB4_04190 PF01740 STAS domain CB4_04192 PF00672 HAMP domain CB4_04192 PF16591 Helical bimodular sensor domain CB4_04192 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_04193 PF07194 P2 response regulator binding domain CB4_04193 PF01627 Hpt domain CB4_04193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_04193 PF02895 Signal transducing histidine kinase, homodimeric domain CB4_04193 PF01584 CheW-like domain CB4_04194 PF01584 CheW-like domain CB4_04195 PF02082 Transcriptional regulator CB4_04196 PF13460 NAD(P)H-binding CB4_04197 PF07687 Peptidase dimerisation domain CB4_04197 PF01546 Peptidase family M20/M25/M40 CB4_04198 PF00202 Aminotransferase class-III