CB4_00001 PF00158 Sigma-54 interaction domain CB4_00001 PF02954 Bacterial regulatory protein, Fis family CB4_00001 PF13426 PAS domain CB4_00002 PF04055 Radical SAM superfamily CB4_00002 PF12544 Lysine-2,3-aminomutase CB4_00003 PF03862 CB4_00003 CB4_00004 PF07451 Stage V sporulation protein AD (SpoVAD) CB4_00005 PF03862 CB4_00005 CB4_00006 PF07870 CB4_00006 CB4_00007 PF04239 Protein of unknown function (DUF421) CB4_00007 PF07870 CB4_00007 CB4_00008 PF00004 ATPase family associated with various cellular activities (AAA) CB4_00008 PF02861 Clp amino terminal domain CB4_00008 PF07724 AAA domain (Cdc48 subfamily) CB4_00008 PF10431 C-terminal, D2-small domain, of ClpB protein CB4_00010 PF01527 Transposase CB4_00011 PF01047 MarR family CB4_00012 PF07690 Major Facilitator Superfamily CB4_00013 PF08921 Domain of unknown function (DUF1904) CB4_00014 PF13245 Part of AAA domain CB4_00014 PF13538 UvrD-like helicase C-terminal domain CB4_00016 PF09580 CB4_00016 CB4_00017 PF01522 Polysaccharide deacetylase CB4_00018 PF01520 N-acetylmuramoyl-L-alanine amidase CB4_00019 PF05504 Spore germination B3/ GerAC like, C-terminal CB4_00020 PF03323 CB4_00020 CB4_00021 PF03845 CB4_00021 CB4_00032 PF00512 His Kinase A (phospho-acceptor) domain CB4_00032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00033 PF00072 Response regulator receiver domain CB4_00033 PF00486 Transcriptional regulatory protein, C terminal CB4_00035 PF01475 Ferric uptake regulator family CB4_00036 PF00950 CB4_00036 CB4_00037 PF00005 ABC transporter CB4_00038 PF01297 Periplasmic solute binding protein family CB4_00040 PF07664 CB4_00040 CB4_00040 PF07670 Nucleoside recognition CB4_00041 PF02421 Ferrous iron transport protein B CB4_00042 PF04023 FeoA domain CB4_00045 PF00158 Sigma-54 interaction domain CB4_00045 PF13188 PAS domain CB4_00045 PF13426 PAS domain CB4_00046 PF00202 Aminotransferase class-III CB4_00047 PF00171 Aldehyde dehydrogenase family CB4_00048 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CB4_00048 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CB4_00049 PF07690 Major Facilitator Superfamily CB4_00050 PF12007 Protein of unknown function (DUF3501) CB4_00051 PF02915 Rubrerythrin CB4_00052 PF00324 Amino acid permease CB4_00053 PF00324 Amino acid permease CB4_00054 PF01226 Formate/nitrite transporter CB4_00055 PF07849 CB4_00055 CB4_00056 PF00384 Molybdopterin oxidoreductase CB4_00056 PF01568 Molydopterin dinucleotide binding domain CB4_00056 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CB4_00056 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CB4_00056 PF12838 4Fe-4S dicluster domain CB4_00056 PF13510 2Fe-2S iron-sulfur cluster binding domain CB4_00057 PF10057 CB4_00057 CB4_00058 PF02634 FdhD/NarQ family CB4_00059 PF12833 Helix-turn-helix domain CB4_00061 PF00474 Sodium:solute symporter family CB4_00062 PF08141 CB4_00062 CB4_00075 PF04308 CB4_00075 CB4_00076 PF00378 Enoyl-CoA hydratase/isomerase family CB4_00077 PF00484 Carbonic anhydrase CB4_00078 PF06108 Protein of unknown function (DUF952) CB4_00079 PF00512 His Kinase A (phospho-acceptor) domain CB4_00079 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00079 PF08447 PAS fold CB4_00079 PF13426 PAS domain CB4_00081 PF00881 Nitroreductase family CB4_00082 PF12802 MarR family CB4_00083 PF00291 Pyridoxal-phosphate dependent enzyme CB4_00083 PF00585 C-terminal regulatory domain of Threonine dehydratase CB4_00084 PF00005 ABC transporter CB4_00085 PF00528 Binding-protein-dependent transport system inner membrane component CB4_00086 PF13531 Bacterial extracellular solute-binding protein CB4_00087 PF12727 PBP superfamily domain CB4_00087 PF12728 Helix-turn-helix domain CB4_00088 PF04073 Aminoacyl-tRNA editing domain CB4_00089 PF01053 Cys/Met metabolism PLP-dependent enzyme CB4_00090 PF01053 Cys/Met metabolism PLP-dependent enzyme CB4_00092 PF04203 Sortase family CB4_00093 PF00324 Amino acid permease CB4_00094 PF01966 HD domain CB4_00095 PF04536 TLP18 CB4_00096 PF04011 LemA family CB4_00097 PF00892 EamA-like transporter family CB4_00098 PF00221 Aromatic amino acid lyase CB4_00099 PF00083 Sugar (and other) transporter CB4_00100 PF00491 Arginase family CB4_00101 PF01979 Amidohydrolase family CB4_00102 PF01175 Urocanase CB4_00102 PF17391 CB4_00102 CB4_00102 PF17392 CB4_00102 CB4_00103 PF00072 Response regulator receiver domain CB4_00103 PF12833 Helix-turn-helix domain CB4_00104 PF05962 HutD CB4_00105 PF00324 Amino acid permease CB4_00106 PF00221 Aromatic amino acid lyase CB4_00107 PF09021 HutP CB4_00108 PF05163 DinB family CB4_00109 PF02661 Fic/DOC family CB4_00110 PF00392 Bacterial regulatory proteins, gntR family CB4_00111 PF08282 haloacid dehalogenase-like hydrolase CB4_00112 PF00557 Metallopeptidase family M24 CB4_00115 PF01040 UbiA prenyltransferase family CB4_00116 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00116 PF00672 HAMP domain CB4_00116 PF12729 CB4_00116 CB4_00117 PF13560 Helix-turn-helix domain CB4_00118 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CB4_00119 PF12802 MarR family CB4_00121 PF05368 NmrA-like family CB4_00122 PF12867 DinB superfamily CB4_00123 PF10592 CB4_00123 CB4_00124 PF01380 SIS domain CB4_00124 PF13522 Glutamine amidotransferase domain CB4_00125 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CB4_00125 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CB4_00125 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CB4_00125 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CB4_00126 PF07949 YbbR-like protein CB4_00127 PF02457 DisA bacterial checkpoint controller nucleotide-binding CB4_00129 PF04519 CB4_00129 CB4_00129 PF13490 Putative zinc-finger CB4_00130 PF04542 Sigma-70 region 2 CB4_00130 PF08281 Sigma-70, region 4 CB4_00131 PF00491 Arginase family CB4_00151 PF01944 CB4_00151 CB4_00152 PF01522 Polysaccharide deacetylase CB4_00154 PF01883 Domain of unknown function DUF59 CB4_00154 PF10609 ParA/MinD ATPase like CB4_00155 PF01520 N-acetylmuramoyl-L-alanine amidase CB4_00157 PF00380 Ribosomal protein S9/S16 CB4_00158 PF00572 Ribosomal protein L13 CB4_00159 PF00270 DEAD/DEAH box helicase CB4_00159 PF00271 Helicase conserved C-terminal domain CB4_00159 PF00570 HRDC domain CB4_00159 PF09382 RQC domain CB4_00159 PF16124 CB4_00159 CB4_00160 PF07695 CB4_00160 CB4_00160 PF07730 Histidine kinase CB4_00161 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00163 PF01416 tRNA pseudouridine synthase CB4_00164 PF02361 Cobalt transport protein CB4_00165 PF00005 ABC transporter CB4_00166 PF00005 ABC transporter CB4_00167 PF01196 Ribosomal protein L17 CB4_00168 PF01000 RNA polymerase Rpb3/RpoA insert domain CB4_00168 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CB4_00168 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CB4_00169 PF00411 Ribosomal protein S11 CB4_00170 PF00416 Ribosomal protein S13/S18 CB4_00171 PF01176 Translation initiation factor 1A / IF-1 CB4_00172 PF00557 Metallopeptidase family M24 CB4_00173 PF00406 Adenylate kinase CB4_00173 PF05191 Adenylate kinase, active site lid CB4_00174 PF00344 SecY translocase CB4_00175 PF00828 Ribosomal protein L18e/L15 CB4_00176 PF00327 Ribosomal protein L30p/L7e CB4_00177 PF00333 Ribosomal protein S5, N-terminal domain CB4_00177 PF03719 Ribosomal protein S5, C-terminal domain CB4_00178 PF00861 Ribosomal L18p/L5e family CB4_00179 PF00347 Ribosomal protein L6 CB4_00180 PF00410 Ribosomal protein S8 CB4_00181 PF00253 Ribosomal protein S14p/S29e CB4_00182 PF00281 Ribosomal protein L5 CB4_00182 PF00673 ribosomal L5P family C-terminus CB4_00183 PF00467 KOW motif CB4_00183 PF17136 CB4_00183 CB4_00184 PF00238 Ribosomal protein L14p/L23e CB4_00185 PF00366 Ribosomal protein S17 CB4_00186 PF00831 Ribosomal L29 protein CB4_00187 PF00252 Ribosomal protein L16p/L10e CB4_00188 PF00189 Ribosomal protein S3, C-terminal domain CB4_00188 PF07650 KH domain CB4_00189 PF00237 Ribosomal protein L22p/L17e CB4_00190 PF00203 Ribosomal protein S19 CB4_00191 PF00181 Ribosomal Proteins L2, RNA binding domain CB4_00191 PF03947 Ribosomal Proteins L2, C-terminal domain CB4_00192 PF00276 Ribosomal protein L23 CB4_00193 PF00573 Ribosomal protein L4/L1 family CB4_00194 PF00297 Ribosomal protein L3 CB4_00195 PF00338 Ribosomal protein S10p/S20e CB4_00197 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00197 PF11563 Protoglobin CB4_00201 PF13487 HD domain CB4_00202 PF01814 Hemerythrin HHE cation binding domain CB4_00203 PF01814 Hemerythrin HHE cation binding domain CB4_00204 PF08810 Kinase associated protein B CB4_00205 PF01145 SPFH domain / Band 7 family CB4_00206 PF13411 MerR HTH family regulatory protein CB4_00220 PF02588 CB4_00220 CB4_00221 PF00462 Glutaredoxin CB4_00222 PF01895 PhoU domain CB4_00223 PF01098 CB4_00223 CB4_00224 PF00009 Elongation factor Tu GTP binding domain CB4_00224 PF03143 Elongation factor Tu C-terminal domain CB4_00224 PF03144 Elongation factor Tu domain 2 CB4_00225 PF00009 Elongation factor Tu GTP binding domain CB4_00225 PF00679 Elongation factor G C-terminus CB4_00225 PF03144 Elongation factor Tu domain 2 CB4_00225 PF03764 Elongation factor G, domain IV CB4_00225 PF14492 Elongation Factor G, domain II CB4_00226 PF00177 Ribosomal protein S7p/S5e CB4_00227 PF00164 Ribosomal protein S12/S23 CB4_00228 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CB4_00229 PF00623 RNA polymerase Rpb1, domain 2 CB4_00229 PF04983 RNA polymerase Rpb1, domain 3 CB4_00229 PF04997 RNA polymerase Rpb1, domain 1 CB4_00229 PF04998 RNA polymerase Rpb1, domain 5 CB4_00229 PF05000 RNA polymerase Rpb1, domain 4 CB4_00230 PF00562 RNA polymerase Rpb2, domain 6 CB4_00230 PF04560 RNA polymerase Rpb2, domain 7 CB4_00230 PF04561 RNA polymerase Rpb2, domain 2 CB4_00230 PF04563 RNA polymerase beta subunit CB4_00230 PF04565 RNA polymerase Rpb2, domain 3 CB4_00230 PF10385 RNA polymerase beta subunit external 1 domain CB4_00231 PF05175 Methyltransferase small domain CB4_00232 PF00542 Ribosomal protein L7/L12 C-terminal domain CB4_00232 PF16320 CB4_00232 CB4_00233 PF00466 Ribosomal protein L10 CB4_00234 PF00687 Ribosomal protein L1p/L10e family CB4_00235 PF00298 Ribosomal protein L11, RNA binding domain CB4_00235 PF03946 Ribosomal protein L11, N-terminal domain CB4_00236 PF02357 Transcription termination factor nusG CB4_00237 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CB4_00238 PF00471 Ribosomal protein L33 CB4_00239 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00239 PF00672 HAMP domain CB4_00239 PF02743 Cache domain CB4_00240 PF04542 Sigma-70 region 2 CB4_00240 PF08281 Sigma-70, region 4 CB4_00241 PF05991 CB4_00241 CB4_00242 PF00588 SpoU rRNA Methylase family CB4_00242 PF08032 RNA 2'-O ribose methyltransferase substrate binding CB4_00243 PF00636 Ribonuclease III domain CB4_00244 PF01406 tRNA synthetases class I (C) catalytic domain CB4_00244 PF09190 DALR domain CB4_00245 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_00245 PF06426 Serine acetyltransferase, N-terminal CB4_00246 PF00749 tRNA synthetases class I (E and Q), catalytic domain CB4_00247 PF02542 YgbB family CB4_00248 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CB4_00249 PF01938 TRAM domain CB4_00250 PF02559 CarD-like/TRCF domain CB4_00251 PF01066 CDP-alcohol phosphatidyltransferase CB4_00252 PF02457 DisA bacterial checkpoint controller nucleotide-binding CB4_00252 PF10635 DisA bacterial checkpoint controller linker region CB4_00253 PF13481 AAA domain CB4_00253 PF13541 Subunit ChlI of Mg-chelatase CB4_00254 PF00004 ATPase family associated with various cellular activities (AAA) CB4_00254 PF02151 UvrB/uvrC motif CB4_00254 PF02861 Clp amino terminal domain CB4_00254 PF07724 AAA domain (Cdc48 subfamily) CB4_00254 PF10431 C-terminal, D2-small domain, of ClpB protein CB4_00255 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CB4_00256 PF02151 UvrB/uvrC motif CB4_00257 PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) CB4_00258 PF00005 ABC transporter CB4_00259 PF00528 Binding-protein-dependent transport system inner membrane component CB4_00260 PF00528 Binding-protein-dependent transport system inner membrane component CB4_00261 PF12849 PBP superfamily domain CB4_00262 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00262 PF00672 HAMP domain CB4_00263 PF01609 Transposase DDE domain CB4_00264 PF12729 CB4_00264 CB4_00268 PF00152 tRNA synthetases class II (D, K and N) CB4_00268 PF01336 OB-fold nucleic acid binding domain CB4_00269 PF01272 Transcription elongation factor, GreA/GreB, C-term CB4_00269 PF03449 Transcription elongation factor, N-terminal CB4_00270 PF01207 Dihydrouridine synthase (Dus) CB4_00271 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CB4_00272 PF02152 Dihydroneopterin aldolase CB4_00273 PF00809 Pterin binding enzyme CB4_00274 PF01063 Aminotransferase class IV CB4_00275 PF00117 Glutamine amidotransferase class-I CB4_00276 PF00425 chorismate binding enzyme CB4_00276 PF04715 Anthranilate synthase component I, N terminal region CB4_00277 PF00291 Pyridoxal-phosphate dependent enzyme CB4_00278 PF01430 Hsp33 protein CB4_00279 PF03309 Type III pantothenate kinase CB4_00280 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CB4_00280 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CB4_00281 PF00890 FAD binding domain CB4_00281 PF02910 Fumarate reductase flavoprotein C-term CB4_00282 PF02445 Quinolinate synthetase A protein CB4_00283 PF00004 ATPase family associated with various cellular activities (AAA) CB4_00283 PF01434 Peptidase family M41 CB4_00283 PF06480 FtsH Extracellular CB4_00284 PF00156 Phosphoribosyl transferase domain CB4_00285 PF01171 PP-loop family CB4_00285 PF11734 TilS substrate C-terminal domain CB4_00286 PF14103 CB4_00286 CB4_00287 PF13304 AAA domain CB4_00288 PF07228 Stage II sporulation protein E (SpoIIE) CB4_00289 PF04977 Septum formation initiator CB4_00290 PF09578 CB4_00290 CB4_00291 PF07873 YabP family CB4_00292 PF01479 S4 domain CB4_00293 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00293 PF03819 MazG nucleotide pyrophosphohydrolase domain CB4_00294 PF01943 CB4_00294 CB4_00294 PF14667 Polysaccharide biosynthesis C-terminal domain CB4_00295 PF04014 Antidote-toxin recognition MazE CB4_00295 PF15714 CB4_00295 CB4_00296 PF13616 PPIC-type PPIASE domain CB4_00297 PF00270 DEAD/DEAH box helicase CB4_00297 PF00271 Helicase conserved C-terminal domain CB4_00297 PF02559 CarD-like/TRCF domain CB4_00297 PF03461 TRCF domain CB4_00298 PF10955 CB4_00298 CB4_00299 PF01195 Peptidyl-tRNA hydrolase CB4_00300 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CB4_00300 PF14572 Phosphoribosyl synthetase-associated domain CB4_00301 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_00301 PF00483 Nucleotidyl transferase CB4_00302 PF04026 SpoVG CB4_00303 PF01042 Endoribonuclease L-PSP CB4_00304 PF00156 Phosphoribosyl transferase domain CB4_00304 PF09182 Bacterial purine repressor, N-terminal CB4_00305 PF00288 GHMP kinases N terminal domain CB4_00305 PF08544 GHMP kinases C terminal CB4_00306 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_00307 PF06257 Protein of unknown function (DUF1021) CB4_00308 PF05582 CB4_00308 CB4_00309 PF00398 Ribosomal RNA adenine dimethylase CB4_00310 PF13331 CB4_00310 CB4_00310 PF13662 Toprim domain CB4_00311 PF03990 CB4_00311 CB4_00311 PF06725 3D domain CB4_00311 PF07501 G5 domain CB4_00312 PF01026 TatD related DNase CB4_00313 PF01588 Putative tRNA binding domain CB4_00313 PF08264 Anticodon-binding domain of tRNA CB4_00313 PF09334 tRNA synthetases class I (M) CB4_00314 PF04014 Antidote-toxin recognition MazE CB4_00316 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00317 PF05175 Methyltransferase small domain CB4_00318 PF06156 CB4_00318 CB4_00319 PF04468 CB4_00319 CB4_00320 PF13177 DNA polymerase III, delta subunit CB4_00321 PF03885 Protein of unknown function (DUF327) CB4_00322 PF02223 Thymidylate kinase CB4_00323 PF01276 Orn/Lys/Arg decarboxylase, major domain CB4_00323 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CB4_00324 PF10764 CB4_00324 CB4_00330 PF07441 CB4_00330 CB4_00331 PF02517 CAAX protease self-immunity CB4_00332 PF02132 RecR protein CB4_00332 PF13662 Toprim domain CB4_00333 PF02575 YbaB/EbfC DNA-binding family CB4_00334 PF12169 DNA polymerase III subunits gamma and tau domain III CB4_00334 PF13177 DNA polymerase III, delta subunit CB4_00335 PF00512 His Kinase A (phospho-acceptor) domain CB4_00335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00335 PF13426 PAS domain CB4_00337 PF07228 Stage II sporulation protein E (SpoIIE) CB4_00340 PF00440 Bacterial regulatory proteins, tetR family CB4_00340 PF08359 YsiA-like protein, C-terminal region CB4_00341 PF13437 HlyD family secretion protein CB4_00341 PF13533 Biotin-lipoyl like CB4_00342 PF12698 ABC-2 family transporter protein CB4_00343 PF14437 CB4_00343 CB4_00345 PF09992 Predicted periplasmic protein (DUF2233) CB4_00346 PF12697 Alpha/beta hydrolase family CB4_00347 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_00347 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_00347 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_00348 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CB4_00348 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CB4_00349 PF00378 Enoyl-CoA hydratase/isomerase family CB4_00350 PF00158 Sigma-54 interaction domain CB4_00350 PF02954 Bacterial regulatory protein, Fis family CB4_00350 PF08448 PAS fold CB4_00352 PF00216 Bacterial DNA-binding protein CB4_00354 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00354 PF02602 Uroporphyrinogen-III synthase HemD CB4_00355 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CB4_00355 PF07685 CobB/CobQ-like glutamine amidotransferase domain CB4_00356 PF01890 Cobalamin synthesis G C-terminus CB4_00356 PF11760 Cobalamin synthesis G N-terminal CB4_00356 PF11761 CB4_00356 CB4_00357 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00358 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00359 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00359 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CB4_00360 PF01888 CbiD CB4_00361 PF02570 Precorrin-8X methylmutase CB4_00362 PF02571 CB4_00362 CB4_00363 PF01903 CbiX CB4_00364 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_00364 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CB4_00365 PF00072 Response regulator receiver domain CB4_00365 PF00196 Bacterial regulatory proteins, luxR family CB4_00366 PF07695 CB4_00366 CB4_00366 PF07730 Histidine kinase CB4_00367 PF02073 Thermophilic metalloprotease (M29) CB4_00369 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CB4_00369 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CB4_00370 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CB4_00370 PF02403 Seryl-tRNA synthetase N-terminal domain CB4_00371 PF01174 SNO glutamine amidotransferase family CB4_00372 PF01680 SOR/SNZ family CB4_00373 PF00768 D-alanyl-D-alanine carboxypeptidase CB4_00373 PF07943 Penicillin-binding protein 5, C-terminal domain CB4_00374 PF00478 IMP dehydrogenase / GMP reductase domain CB4_00374 PF00571 CBS domain CB4_00375 PF14175 CB4_00375 CB4_00379 PF00521 DNA gyrase/topoisomerase IV, subunit A CB4_00379 PF03989 DNA gyrase C-terminal domain, beta-propeller CB4_00380 PF00204 DNA gyrase B CB4_00380 PF00986 DNA gyrase B subunit, carboxyl terminus CB4_00380 PF01751 Toprim domain CB4_00380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00381 PF04025 CB4_00381 CB4_00382 PF02463 RecF/RecN/SMC N terminal domain CB4_00383 PF13275 S4 domain CB4_00384 PF00712 DNA polymerase III beta subunit, N-terminal domain CB4_00384 PF02767 DNA polymerase III beta subunit, central domain CB4_00384 PF02768 DNA polymerase III beta subunit, C-terminal domain CB4_00385 PF00308 Bacterial dnaA protein CB4_00385 PF08299 Bacterial dnaA protein helix-turn-helix CB4_00385 PF11638 DnaA N-terminal domain CB4_00386 PF00825 Ribonuclease P CB4_00387 PF02096 60Kd inner membrane protein CB4_00388 PF01424 R3H domain CB4_00388 PF13083 KH domain CB4_00388 PF14804 Jag N-terminus CB4_00389 PF01926 50S ribosome-binding GTPase CB4_00389 PF10396 GTP-binding protein TrmE N-terminus CB4_00389 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE CB4_00390 PF01134 Glucose inhibited division protein A CB4_00390 PF13932 GidA associated domain 3 CB4_00391 PF02527 rRNA small subunit methyltransferase G CB4_00392 PF02195 ParB-like nuclease domain CB4_00393 PF13614 AAA domain CB4_00394 PF02195 ParB-like nuclease domain CB4_00395 PF00266 Aminotransferase class-V CB4_00396 PF04474 CB4_00396 CB4_00397 PF06866 CB4_00397 CB4_00398 PF11823 CB4_00398 CB4_00399 PF00924 Mechanosensitive ion channel CB4_00400 PF06107 CB4_00400 CB4_00402 PF01926 50S ribosome-binding GTPase CB4_00402 PF06071 Protein of unknown function (DUF933) CB4_00403 PF01250 Ribosomal protein S6 CB4_00404 PF00436 Single-strand binding protein family CB4_00405 PF01084 Ribosomal protein S18 CB4_00406 PF09991 CB4_00406 CB4_00407 PF01368 DHH family CB4_00407 PF02272 DHHA1 domain CB4_00407 PF13188 PAS domain CB4_00408 PF01281 Ribosomal protein L9, N-terminal domain CB4_00408 PF03948 Ribosomal protein L9, C-terminal domain CB4_00409 PF00772 DnaB-like helicase N terminal domain CB4_00409 PF03796 DnaB-like helicase C terminal domain CB4_00409 PF14528 LAGLIDADG-like domain CB4_00409 PF14890 Intein splicing domain CB4_00410 PF00709 Adenylosuccinate synthetase CB4_00411 PF01551 Peptidase family M23 CB4_00412 PF00072 Response regulator receiver domain CB4_00412 PF00486 Transcriptional regulatory protein, C terminal CB4_00413 PF00512 His Kinase A (phospho-acceptor) domain CB4_00413 PF00672 HAMP domain CB4_00413 PF00989 PAS fold CB4_00413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00414 PF07435 YycH protein CB4_00415 PF09648 YycH protein CB4_00416 PF00753 Metallo-beta-lactamase superfamily CB4_00417 PF13180 PDZ domain CB4_00417 PF13365 Trypsin-like peptidase domain CB4_00418 PF14116 CB4_00418 CB4_00419 PF02590 Predicted SPOUT methyltransferase CB4_00420 PF00440 Bacterial regulatory proteins, tetR family CB4_00420 PF13305 WHG domain CB4_00421 PF00106 short chain dehydrogenase CB4_00422 PF00107 Zinc-binding dehydrogenase CB4_00422 PF08240 Alcohol dehydrogenase GroES-like domain CB4_00423 PF03088 Strictosidine synthase CB4_00424 PF00106 short chain dehydrogenase CB4_00425 PF00072 Response regulator receiver domain CB4_00425 PF00486 Transcriptional regulatory protein, C terminal CB4_00425 PF03704 Bacterial transcriptional activator domain CB4_00426 PF00072 Response regulator receiver domain CB4_00426 PF00512 His Kinase A (phospho-acceptor) domain CB4_00426 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00426 PF06580 CB4_00426 CB4_00426 PF07695 CB4_00426 CB4_00427 PF00395 S-layer homology domain CB4_00427 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) CB4_00428 PF00395 S-layer homology domain CB4_00428 PF12733 CB4_00428 CB4_00429 PF03323 CB4_00429 CB4_00430 PF03845 CB4_00430 CB4_00431 PF05504 Spore germination B3/ GerAC like, C-terminal CB4_00432 PF10009 CB4_00432 CB4_00433 PF04542 Sigma-70 region 2 CB4_00433 PF08281 Sigma-70, region 4 CB4_00434 PF11738 Protein of unknown function (DUF3298) CB4_00435 PF14172 CB4_00435 CB4_00436 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00436 PF00672 HAMP domain CB4_00436 PF12729 CB4_00436 CB4_00437 PF00892 EamA-like transporter family CB4_00438 PF00155 Aminotransferase class I and II CB4_00438 PF00392 Bacterial regulatory proteins, gntR family CB4_00439 PF05154 CB4_00439 CB4_00440 PF04172 CB4_00440 CB4_00441 PF03788 CB4_00441 CB4_00442 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_00442 PF03466 LysR substrate binding domain CB4_00443 PF08141 CB4_00443 CB4_00444 PF00483 Nucleotidyl transferase CB4_00444 PF01050 Mannose-6-phosphate isomerase CB4_00446 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00447 PF00072 Response regulator receiver domain CB4_00447 PF00486 Transcriptional regulatory protein, C terminal CB4_00448 PF00512 His Kinase A (phospho-acceptor) domain CB4_00448 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00450 PF00176 SNF2 family N-terminal domain CB4_00450 PF00271 Helicase conserved C-terminal domain CB4_00450 PF04434 CB4_00450 CB4_00450 PF08455 CB4_00450 CB4_00451 PF00395 S-layer homology domain CB4_00452 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CB4_00452 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CB4_00453 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_00453 PF03466 LysR substrate binding domain CB4_00454 PF00270 DEAD/DEAH box helicase CB4_00454 PF00271 Helicase conserved C-terminal domain CB4_00455 PF09962 CB4_00455 CB4_00457 PF00270 DEAD/DEAH box helicase CB4_00457 PF00271 Helicase conserved C-terminal domain CB4_00457 PF04408 Helicase associated domain (HA2) CB4_00457 PF08482 CB4_00457 CB4_00458 PF04238 CB4_00458 CB4_00459 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CB4_00460 PF00115 Cytochrome C and Quinol oxidase polypeptide I CB4_00461 PF00510 Cytochrome c oxidase subunit III CB4_00462 PF03626 CB4_00462 CB4_00463 PF00392 Bacterial regulatory proteins, gntR family CB4_00463 PF07729 FCD domain CB4_00464 PF13458 Periplasmic binding protein CB4_00465 PF02653 CB4_00465 CB4_00466 PF02653 CB4_00466 CB4_00467 PF00005 ABC transporter CB4_00467 PF12399 Branched-chain amino acid ATP-binding cassette transporter CB4_00468 PF00005 ABC transporter CB4_00468 PF12399 Branched-chain amino acid ATP-binding cassette transporter CB4_00469 PF02386 Cation transport protein CB4_00470 PF01171 PP-loop family CB4_00471 PF00707 Translation initiation factor IF-3, C-terminal domain CB4_00471 PF05198 Translation initiation factor IF-3, N-terminal domain CB4_00472 PF02222 ATP-grasp domain CB4_00473 PF00440 Bacterial regulatory proteins, tetR family CB4_00473 PF13305 WHG domain CB4_00474 PF01370 NAD dependent epimerase/dehydratase family CB4_00475 PF01904 Protein of unknown function DUF72 CB4_00476 PF08543 Phosphomethylpyrimidine kinase CB4_00477 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00478 PF00474 Sodium:solute symporter family CB4_00479 PF01625 Peptide methionine sulfoxide reductase CB4_00479 PF01641 SelR domain CB4_00480 PF00578 AhpC/TSA family CB4_00480 PF10417 C-terminal domain of 1-Cys peroxiredoxin CB4_00481 PF02592 CB4_00481 CB4_00482 PF13520 Amino acid permease CB4_00498 PF00378 Enoyl-CoA hydratase/isomerase family CB4_00499 PF10112 CB4_00499 CB4_00500 PF05816 CB4_00500 CB4_00501 PF02245 Methylpurine-DNA glycosylase (MPG) CB4_00502 PF12706 Beta-lactamase superfamily domain CB4_00503 PF07883 Cupin domain CB4_00506 PF03063 Prismane/CO dehydrogenase family CB4_00507 PF01553 Acyltransferase CB4_00508 PF13419 Haloacid dehalogenase-like hydrolase CB4_00510 PF04073 Aminoacyl-tRNA editing domain CB4_00512 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00512 PF00672 HAMP domain CB4_00512 PF12729 CB4_00512 CB4_00514 PF00563 EAL domain CB4_00514 PF00990 GGDEF domain CB4_00514 PF08448 PAS fold CB4_00515 PF01928 CYTH domain CB4_00516 PF13614 AAA domain CB4_00517 PF11738 Protein of unknown function (DUF3298) CB4_00517 PF13739 Domain of unknown function (DUF4163) CB4_00518 PF01521 Iron-sulphur cluster biosynthesis CB4_00519 PF00892 EamA-like transporter family CB4_00520 PF01522 Polysaccharide deacetylase CB4_00521 PF00005 ABC transporter CB4_00523 PF12698 ABC-2 family transporter protein CB4_00524 PF12698 ABC-2 family transporter protein CB4_00525 PF04241 CB4_00525 CB4_00526 PF07940 Heparinase II/III-like protein CB4_00528 PF03631 CB4_00528 CB4_00529 PF03602 Conserved hypothetical protein 95 CB4_00530 PF01522 Polysaccharide deacetylase CB4_00532 PF00005 ABC transporter CB4_00533 PF05975 CB4_00533 CB4_00534 PF01545 Cation efflux family CB4_00534 PF16916 CB4_00534 CB4_00535 PF13518 Helix-turn-helix domain CB4_00536 PF03009 Glycerophosphoryl diester phosphodiesterase family CB4_00537 PF05525 CB4_00537 CB4_00538 PF00733 Asparagine synthase CB4_00538 PF13537 Glutamine amidotransferase domain CB4_00539 PF13045 CB4_00539 CB4_00540 PF07293 CB4_00540 CB4_00541 PF00582 Universal stress protein family CB4_00542 PF00849 RNA pseudouridylate synthase CB4_00543 PF01966 HD domain CB4_00544 PF08741 CB4_00544 CB4_00545 PF00905 Penicillin binding protein transpeptidase domain CB4_00545 PF00912 Transglycosylase CB4_00546 PF05154 CB4_00546 CB4_00547 PF01564 Spermine/spermidine synthase CB4_00547 PF17284 CB4_00547 CB4_00548 PF00491 Arginase family CB4_00549 PF09148 Domain of unknown function (DUF1934) CB4_00550 PF00750 tRNA synthetases class I (R) CB4_00550 PF03485 Arginyl tRNA synthetase N terminal domain CB4_00550 PF05746 DALR anticodon binding domain CB4_00551 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00551 PF00672 HAMP domain CB4_00551 PF02743 Cache domain CB4_00552 PF02754 CB4_00552 CB4_00552 PF13183 4Fe-4S dicluster domain CB4_00553 PF00108 Thiolase, N-terminal domain CB4_00553 PF02803 Thiolase, C-terminal domain CB4_00554 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CB4_00554 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CB4_00555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_00555 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_00555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_00556 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_00556 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_00556 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_00557 PF03308 ArgK protein CB4_00558 PF00440 Bacterial regulatory proteins, tetR family CB4_00559 PF01642 Methylmalonyl-CoA mutase CB4_00559 PF02310 B12 binding domain CB4_00559 PF03308 ArgK protein CB4_00560 PF05066 HB1, ASXL, restriction endonuclease HTH domain CB4_00561 PF00117 Glutamine amidotransferase class-I CB4_00561 PF06418 CTP synthase N-terminus CB4_00562 PF00072 Response regulator receiver domain CB4_00563 PF01116 Fructose-bisphosphate aldolase class-II CB4_00564 PF00923 Transaldolase CB4_00565 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CB4_00566 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CB4_00567 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CB4_00567 PF07497 Rho termination factor, RNA-binding domain CB4_00567 PF07498 Rho termination factor, N-terminal domain CB4_00568 PF02673 CB4_00568 CB4_00569 PF02386 Cation transport protein CB4_00570 PF04055 Radical SAM superfamily CB4_00571 PF01197 Ribosomal protein L31 CB4_00572 PF09580 CB4_00572 CB4_00573 PF01548 CB4_00573 CB4_00573 PF02371 CB4_00573 CB4_00574 PF00472 RF-1 domain CB4_00574 PF03462 PCRF domain CB4_00575 PF05175 Methyltransferase small domain CB4_00576 PF09551 CB4_00576 CB4_00577 PF01300 Telomere recombination CB4_00577 PF03481 Putative GTP-binding controlling metal-binding CB4_00578 PF02659 CB4_00578 CB4_00579 PF02535 CB4_00579 CB4_00580 PF01451 Low molecular weight phosphotyrosine protein phosphatase CB4_00581 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00581 PF00672 HAMP domain CB4_00582 PF02502 Ribose/Galactose Isomerase CB4_00583 PF04260 Protein of unknown function (DUF436) CB4_00584 PF00464 Serine hydroxymethyltransferase CB4_00585 PF14681 Uracil phosphoribosyltransferase CB4_00586 PF02350 UDP-N-acetylglucosamine 2-epimerase CB4_00587 PF00395 S-layer homology domain CB4_00587 PF09992 Predicted periplasmic protein (DUF2233) CB4_00588 PF00108 Thiolase, N-terminal domain CB4_00588 PF02803 Thiolase, C-terminal domain CB4_00589 PF09527 CB4_00589 CB4_00590 PF03899 CB4_00590 CB4_00591 PF00119 ATP synthase A chain CB4_00592 PF00137 ATP synthase subunit C CB4_00593 PF00430 ATP synthase B/B' CF(0) CB4_00594 PF00213 ATP synthase delta (OSCP) subunit CB4_00595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CB4_00595 PF00306 ATP synthase alpha/beta chain, C terminal domain CB4_00595 PF02874 ATP synthase alpha/beta family, beta-barrel domain CB4_00596 PF00231 ATP synthase CB4_00597 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CB4_00597 PF02874 ATP synthase alpha/beta family, beta-barrel domain CB4_00598 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CB4_00598 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CB4_00599 PF01451 Low molecular weight phosphotyrosine protein phosphatase CB4_00600 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CB4_00601 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CB4_00602 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CB4_00603 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CB4_00604 PF00146 NADH dehydrogenase CB4_00605 PF12838 4Fe-4S dicluster domain CB4_00606 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CB4_00607 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CB4_00608 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CB4_00608 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CB4_00608 PF01010 CB4_00608 CB4_00609 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CB4_00610 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CB4_00611 PF06612 CB4_00611 CB4_00612 PF08680 Protein of unknown function (DUF1779) CB4_00613 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CB4_00614 PF08486 CB4_00614 CB4_00616 PF01551 Peptidase family M23 CB4_00617 PF12116 Stage III sporulation protein D CB4_00618 PF06723 MreB/Mbl protein CB4_00619 PF00460 Flagella basal body rod protein CB4_00619 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CB4_00620 PF00460 Flagella basal body rod protein CB4_00620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CB4_00621 PF11772 CB4_00621 CB4_00622 PF01037 AsnC family CB4_00622 PF13404 AsnC-type helix-turn-helix domain CB4_00623 PF00155 Aminotransferase class I and II CB4_00624 PF03808 CB4_00624 CB4_00625 PF00953 Glycosyl transferase family 4 CB4_00626 PF04892 CB4_00626 CB4_00627 PF00342 Phosphoglucose isomerase CB4_00628 PF01061 CB4_00628 CB4_00629 PF00005 ABC transporter CB4_00629 PF14524 Wzt C-terminal domain CB4_00630 PF00535 Glycosyl transferase family 2 CB4_00630 PF08241 Methyltransferase domain CB4_00630 PF13692 Glycosyl transferases group 1 CB4_00631 PF13489 Methyltransferase domain CB4_00632 PF00288 GHMP kinases N terminal domain CB4_00632 PF08544 GHMP kinases C terminal CB4_00633 PF13580 SIS domain CB4_00634 PF00483 Nucleotidyl transferase CB4_00635 PF13242 HAD-hyrolase-like CB4_00637 PF08889 CB4_00637 CB4_00638 PF00535 Glycosyl transferase family 2 CB4_00639 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_00640 PF05853 Prokaryotic protein of unknown function (DUF849) CB4_00642 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CB4_00643 PF00483 Nucleotidyl transferase CB4_00644 PF13847 Methyltransferase domain CB4_00645 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CB4_00646 PF16363 CB4_00646 CB4_00647 PF04321 RmlD substrate binding domain CB4_00648 PF00535 Glycosyl transferase family 2 CB4_00649 PF02397 CB4_00649 CB4_00650 PF13432 Tetratricopeptide repeat CB4_00651 PF04932 CB4_00651 CB4_00652 PF07833 Copper amine oxidase N-terminal domain CB4_00653 PF02321 Outer membrane efflux protein CB4_00654 PF00395 S-layer homology domain CB4_00654 PF12733 CB4_00654 CB4_00654 PF13360 PQQ-like domain CB4_00654 PF13570 PQQ-like domain CB4_00655 PF01047 MarR family CB4_00656 PF13437 HlyD family secretion protein CB4_00657 PF07690 Major Facilitator Superfamily CB4_00658 PF02321 Outer membrane efflux protein CB4_00658 PF13437 HlyD family secretion protein CB4_00658 PF13533 Biotin-lipoyl like CB4_00660 PF06338 CB4_00660 CB4_00661 PF04542 Sigma-70 region 2 CB4_00663 PF00395 S-layer homology domain CB4_00668 PF03062 CB4_00668 CB4_00669 PF03572 Peptidase family S41 CB4_00669 PF13180 PDZ domain CB4_00671 PF00438 S-adenosylmethionine synthetase, N-terminal domain CB4_00671 PF02772 S-adenosylmethionine synthetase, central domain CB4_00671 PF02773 S-adenosylmethionine synthetase, C-terminal domain CB4_00672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_00672 PF05384 CB4_00672 CB4_00672 PF07730 Histidine kinase CB4_00673 PF00072 Response regulator receiver domain CB4_00673 PF00196 Bacterial regulatory proteins, luxR family CB4_00677 PF00271 Helicase conserved C-terminal domain CB4_00677 PF04851 Type III restriction enzyme, res subunit CB4_00679 PF08534 Redoxin CB4_00681 PF04316 Anti-sigma-28 factor, FlgM CB4_00682 PF05130 FlgN protein CB4_00683 PF00460 Flagella basal body rod protein CB4_00683 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CB4_00684 PF00669 Bacterial flagellin N-terminal helical region CB4_00684 PF00700 Bacterial flagellin C-terminal helical region CB4_00686 PF02623 FliW protein CB4_00687 PF02599 Global regulator protein family CB4_00688 PF00669 Bacterial flagellin N-terminal helical region CB4_00688 PF00700 Bacterial flagellin C-terminal helical region CB4_00692 PF03646 FlaG protein CB4_00693 PF02465 CB4_00693 CB4_00693 PF07195 CB4_00693 CB4_00694 PF02561 Flagellar protein FliS CB4_00697 PF01312 FlhB HrpN YscU SpaS Family CB4_00698 PF02561 Flagellar protein FliS CB4_00699 PF00669 Bacterial flagellin N-terminal helical region CB4_00699 PF00700 Bacterial flagellin C-terminal helical region CB4_00700 PF00528 Binding-protein-dependent transport system inner membrane component CB4_00701 PF00313 'Cold-shock' DNA-binding domain CB4_00702 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CB4_00702 PF16321 CB4_00702 CB4_00703 PF00271 Helicase conserved C-terminal domain CB4_00703 PF01043 SecA preprotein cross-linking domain CB4_00703 PF02810 SEC-C motif CB4_00703 PF07516 SecA Wing and Scaffold domain CB4_00703 PF07517 SecA DEAD-like domain CB4_00704 PF00472 RF-1 domain CB4_00704 PF03462 PCRF domain CB4_00705 PF02588 CB4_00705 CB4_00705 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_00706 PF00456 Transketolase, thiamine diphosphate binding domain CB4_00707 PF02779 Transketolase, pyrimidine binding domain CB4_00707 PF02780 Transketolase, C-terminal domain CB4_00708 PF04899 CB4_00708 CB4_00709 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CB4_00710 PF01118 Semialdehyde dehydrogenase, NAD binding domain CB4_00710 PF02774 Semialdehyde dehydrogenase, dimerisation domain CB4_00711 PF00696 Amino acid kinase family CB4_00712 PF00202 Aminotransferase class-III CB4_00713 PF00117 Glutamine amidotransferase class-I CB4_00713 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CB4_00714 PF02142 MGS-like domain CB4_00714 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CB4_00714 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CB4_00715 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CB4_00715 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CB4_00718 PF05362 Lon protease (S16) C-terminal proteolytic domain CB4_00718 PF13654 AAA domain CB4_00719 PF00764 Arginosuccinate synthase CB4_00720 PF00206 Lyase CB4_00720 PF14698 Argininosuccinate lyase C-terminal CB4_00721 PF00005 ABC transporter CB4_00723 PF01551 Peptidase family M23 CB4_00724 PF00595 PDZ domain (Also known as DHR or GLGF) CB4_00724 PF01471 Putative peptidoglycan binding domain CB4_00724 PF03572 Peptidase family S41 CB4_00728 PF00271 Helicase conserved C-terminal domain CB4_00728 PF02151 UvrB/uvrC motif CB4_00728 PF04851 Type III restriction enzyme, res subunit CB4_00728 PF12344 Ultra-violet resistance protein B CB4_00729 PF00005 ABC transporter CB4_00730 PF02603 HPr Serine kinase N terminus CB4_00730 PF07475 HPr Serine kinase C-terminal domain CB4_00731 PF01790 CB4_00731 CB4_00732 PF13419 Haloacid dehalogenase-like hydrolase CB4_00733 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_00734 PF13393 Histidyl-tRNA synthetase CB4_00735 PF01634 ATP phosphoribosyltransferase CB4_00736 PF00815 Histidinol dehydrogenase CB4_00737 PF00475 Imidazoleglycerol-phosphate dehydratase CB4_00738 PF00117 Glutamine amidotransferase class-I CB4_00739 PF00977 Histidine biosynthesis protein CB4_00740 PF00977 Histidine biosynthesis protein CB4_00741 PF01385 CB4_00741 CB4_00741 PF07282 CB4_00741 CB4_00742 PF01502 Phosphoribosyl-AMP cyclohydrolase CB4_00742 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CB4_00743 PF12706 Beta-lactamase superfamily domain CB4_00744 PF01037 AsnC family CB4_00744 PF13404 AsnC-type helix-turn-helix domain CB4_00759 PF00515 Tetratricopeptide repeat CB4_00759 PF14559 Tetratricopeptide repeat CB4_00760 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_00761 PF03668 CB4_00761 CB4_00762 PF01933 Uncharacterised protein family UPF0052 CB4_00763 PF02650 WhiA C-terminal HTH domain CB4_00763 PF10298 WhiA N-terminal LAGLIDADG-like domain CB4_00763 PF14527 WhiA LAGLIDADG-like domain CB4_00764 PF00381 PTS HPr component phosphorylation site CB4_00765 PF00574 Clp protease CB4_00767 PF01738 Dienelactone hydrolase family CB4_00769 PF10087 CB4_00769 CB4_00770 PF00309 CB4_00770 CB4_00770 PF04552 Sigma-54, DNA binding domain CB4_00770 PF04963 Sigma-54 factor, core binding domain CB4_00771 PF04198 Putative sugar-binding domain CB4_00772 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CB4_00772 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CB4_00773 PF00162 Phosphoglycerate kinase CB4_00774 PF00121 Triosephosphate isomerase CB4_00775 PF01676 Metalloenzyme superfamily CB4_00775 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CB4_00776 PF00113 Enolase, C-terminal TIM barrel domain CB4_00776 PF03952 Enolase, N-terminal domain CB4_00777 PF01475 Ferric uptake regulator family CB4_00778 PF03840 Preprotein translocase SecG subunit CB4_00779 PF12146 Putative lysophospholipase CB4_00780 PF12146 Putative lysophospholipase CB4_00781 PF00575 S1 RNA binding domain CB4_00781 PF00773 RNB domain CB4_00781 PF08206 Ribonuclease B OB domain CB4_00783 PF01668 SmpB protein CB4_00787 PF00563 EAL domain CB4_00788 PF02588 CB4_00788 CB4_00788 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_00789 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CB4_00789 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CB4_00790 PF00877 NlpC/P60 family CB4_00792 PF01546 Peptidase family M20/M25/M40 CB4_00792 PF07687 Peptidase dimerisation domain CB4_00793 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_00793 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CB4_00795 PF00390 Malic enzyme, N-terminal domain CB4_00795 PF03949 Malic enzyme, NAD binding domain CB4_00796 PF07238 PilZ domain CB4_00797 PF01968 Hydantoinase/oxoprolinase CB4_00797 PF05378 CB4_00797 CB4_00798 PF02538 CB4_00798 CB4_00800 PF00158 Sigma-54 interaction domain CB4_00800 PF02954 Bacterial regulatory protein, Fis family CB4_00800 PF13188 PAS domain CB4_00800 PF13426 PAS domain CB4_00801 PF02682 Allophanate hydrolase subunit 1 CB4_00802 PF02626 Allophanate hydrolase subunit 2 CB4_00803 PF00107 Zinc-binding dehydrogenase CB4_00803 PF08240 Alcohol dehydrogenase GroES-like domain CB4_00805 PF00330 Aconitase family (aconitate hydratase) CB4_00805 PF00694 Aconitase C-terminal domain CB4_00806 PF01614 Bacterial transcriptional regulator CB4_00806 PF09339 IclR helix-turn-helix domain CB4_00807 PF00892 EamA-like transporter family CB4_00808 PF13487 HD domain CB4_00809 PF00809 Pterin binding enzyme CB4_00809 PF02310 B12 binding domain CB4_00809 PF02574 Homocysteine S-methyltransferase CB4_00809 PF02607 B12 binding domain CB4_00809 PF02965 Vitamin B12 dependent methionine synthase, activation domain CB4_00810 PF02219 Methylenetetrahydrofolate reductase CB4_00810 PF02574 Homocysteine S-methyltransferase CB4_00811 PF01546 Peptidase family M20/M25/M40 CB4_00811 PF07687 Peptidase dimerisation domain CB4_00812 PF01522 Polysaccharide deacetylase CB4_00813 PF13358 DDE superfamily endonuclease CB4_00814 PF13551 Winged helix-turn helix CB4_00814 PF13592 CB4_00814 CB4_00816 PF00293 NUDIX domain CB4_00818 PF02628 CB4_00818 CB4_00819 PF01040 UbiA prenyltransferase family CB4_00820 PF02630 SCO1/SenC CB4_00821 PF06325 Ribosomal protein L11 methyltransferase (PrmA) CB4_00822 PF07238 PilZ domain CB4_00824 PF13556 PucR C-terminal helix-turn-helix domain CB4_00825 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CB4_00825 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CB4_00830 PF04367 CB4_00830 CB4_00831 PF01966 HD domain CB4_00832 PF00005 ABC transporter CB4_00833 PF01565 FAD binding domain CB4_00833 PF02913 FAD linked oxidases, C-terminal domain CB4_00834 PF04392 ABC transporter substrate binding protein CB4_00835 PF01957 NfeD-like C-terminal, partner-binding CB4_00836 PF01145 SPFH domain / Band 7 family CB4_00836 PF15975 CB4_00836 CB4_00838 PF06725 3D domain CB4_00839 PF03054 tRNA methyl transferase CB4_00840 PF00330 Aconitase family (aconitate hydratase) CB4_00840 PF00694 Aconitase C-terminal domain CB4_00842 PF07301 CB4_00842 CB4_00843 PF00392 Bacterial regulatory proteins, gntR family CB4_00843 PF07729 FCD domain CB4_00844 PF02652 CB4_00844 CB4_00845 PF02754 CB4_00845 CB4_00846 PF02589 Uncharacterised ACR, YkgG family COG1556 CB4_00846 PF11870 CB4_00846 CB4_00846 PF13183 4Fe-4S dicluster domain CB4_00847 PF02589 Uncharacterised ACR, YkgG family COG1556 CB4_00848 PF03323 CB4_00848 CB4_00849 PF05504 Spore germination B3/ GerAC like, C-terminal CB4_00851 PF03845 CB4_00851 CB4_00853 PF00171 Aldehyde dehydrogenase family CB4_00854 PF00202 Aminotransferase class-III CB4_00856 PF02277 Phosphoribosyltransferase CB4_00857 PF07690 Major Facilitator Superfamily CB4_00858 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CB4_00858 PF07685 CobB/CobQ-like glutamine amidotransferase domain CB4_00859 PF13241 Putative NAD(P)-binding CB4_00860 PF00881 Nitroreductase family CB4_00861 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CB4_00862 PF00155 Aminotransferase class I and II CB4_00863 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CB4_00864 PF02654 CB4_00864 CB4_00865 PF00300 Histidine phosphatase superfamily (branch 1) CB4_00867 PF01955 CB4_00867 CB4_00868 PF03186 CB4_00868 CB4_00869 PF14014 CB4_00869 CB4_00870 PF13730 CB4_00870 CB4_00871 PF13091 PLD-like domain CB4_00871 PF13396 CB4_00871 CB4_00872 PF01205 Uncharacterized protein family UPF0029 CB4_00872 PF09186 Domain of unknown function (DUF1949) CB4_00873 PF03795 YCII-related domain CB4_00874 PF02401 LytB protein CB4_00875 PF00395 S-layer homology domain CB4_00875 PF02368 Bacterial Ig-like domain (group 2) CB4_00875 PF12733 CB4_00875 CB4_00878 PF13473 Cupredoxin-like domain CB4_00880 PF08486 CB4_00880 CB4_00881 PF08838 Protein of unknown function (DUF1811) CB4_00882 PF07875 CB4_00882 CB4_00885 PF03807 NADP oxidoreductase coenzyme F420-dependent CB4_00885 PF14748 Pyrroline-5-carboxylate reductase dimerisation CB4_00886 PF00171 Aldehyde dehydrogenase family CB4_00887 PF00696 Amino acid kinase family CB4_00887 PF01472 PUA domain CB4_00888 PF03323 CB4_00888 CB4_00889 PF05504 Spore germination B3/ GerAC like, C-terminal CB4_00891 PF03845 CB4_00891 CB4_00892 PF00005 ABC transporter CB4_00893 PF10977 CB4_00893 CB4_00894 PF01497 Periplasmic binding protein CB4_00895 PF01032 FecCD transport family CB4_00896 PF00005 ABC transporter CB4_00897 PF03960 ArsC family CB4_00898 PF00155 Aminotransferase class I and II CB4_00899 PF00578 AhpC/TSA family CB4_00926 PF07484 Phage Tail Collar Domain CB4_00927 PF00583 Acetyltransferase (GNAT) family CB4_00930 PF07484 Phage Tail Collar Domain CB4_00931 PF00583 Acetyltransferase (GNAT) family CB4_00932 PF00395 S-layer homology domain CB4_00932 PF02368 Bacterial Ig-like domain (group 2) CB4_00932 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) CB4_00933 PF01965 DJ-1/PfpI family CB4_00934 PF08896 CB4_00934 CB4_00935 PF07484 Phage Tail Collar Domain CB4_00936 PF00578 AhpC/TSA family CB4_00937 PF01597 Glycine cleavage H-protein CB4_00938 PF04309 Glycerol-3-phosphate responsive antiterminator CB4_00939 PF00230 Major intrinsic protein CB4_00940 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CB4_00940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CB4_00942 PF01266 FAD dependent oxidoreductase CB4_00942 PF16901 CB4_00942 CB4_00943 PF10830 CB4_00943 CB4_00945 PF04542 Sigma-70 region 2 CB4_00946 PF12791 CB4_00946 CB4_00948 PF00005 ABC transporter CB4_00949 PF01458 Uncharacterized protein family (UPF0051) CB4_00950 PF00266 Aminotransferase class-V CB4_00951 PF01592 NifU-like N terminal domain CB4_00952 PF01458 Uncharacterized protein family (UPF0051) CB4_00953 PF00589 Phage integrase family CB4_00954 PF01545 Cation efflux family CB4_00955 PF01545 Cation efflux family CB4_00955 PF16916 CB4_00955 CB4_00957 PF02311 AraC-like ligand binding domain CB4_00957 PF12833 Helix-turn-helix domain CB4_00958 PF00892 EamA-like transporter family CB4_00959 PF09391 Protein of unknown function (DUF2000) CB4_00961 PF01925 CB4_00961 CB4_00963 PF08827 Domain of unknown function (DUF1805) CB4_00964 PF01966 HD domain CB4_00965 PF02511 Thymidylate synthase complementing protein CB4_00966 PF07228 Stage II sporulation protein E (SpoIIE) CB4_00966 PF13426 PAS domain CB4_00967 PF13581 Histidine kinase-like ATPase domain CB4_00968 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_00968 PF00672 HAMP domain CB4_00968 PF12729 CB4_00968 CB4_00969 PF01740 STAS domain CB4_00970 PF05145 CB4_00970 CB4_00971 PF00877 NlpC/P60 family CB4_00972 PF00582 Universal stress protein family CB4_00972 PF02702 Osmosensitive K+ channel His kinase sensor domain CB4_00973 PF02669 CB4_00973 CB4_00974 PF00122 E1-E2 ATPase CB4_00974 PF00702 haloacid dehalogenase-like hydrolase CB4_00975 PF03814 CB4_00975 CB4_00976 PF10057 CB4_00976 CB4_00977 PF09560 CB4_00977 CB4_00979 PF00005 ABC transporter CB4_00980 PF12679 CB4_00980 CB4_00981 PF05573 NosL CB4_00982 PF05048 Periplasmic copper-binding protein (NosD) CB4_00983 PF00591 Glycosyl transferase family, a/b domain CB4_00983 PF02885 Glycosyl transferase family, helical bundle domain CB4_00983 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CB4_00984 PF03060 Nitronate monooxygenase CB4_00985 PF03734 L,D-transpeptidase catalytic domain CB4_00986 PF00892 EamA-like transporter family CB4_00987 PF00155 Aminotransferase class I and II CB4_00987 PF00392 Bacterial regulatory proteins, gntR family CB4_00988 PF01593 Flavin containing amine oxidoreductase CB4_00989 PF00583 Acetyltransferase (GNAT) family CB4_00990 PF02566 OsmC-like protein CB4_00993 PF00395 S-layer homology domain CB4_00994 PF14172 CB4_00994 CB4_00996 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) CB4_00997 PF03734 L,D-transpeptidase catalytic domain CB4_00998 PF01551 Peptidase family M23 CB4_00999 PF04055 Radical SAM superfamily CB4_00999 PF16881 CB4_00999 CB4_01000 PF09580 CB4_01000 CB4_01001 PF06265 Protein of unknown function (DUF1027) CB4_01003 PF11256 CB4_01003 CB4_01004 PF01934 Protein of unknown function DUF86 CB4_01005 PF08220 DeoR-like helix-turn-helix domain CB4_01006 PF07833 Copper amine oxidase N-terminal domain CB4_01007 PF13411 MerR HTH family regulatory protein CB4_01008 PF00892 EamA-like transporter family CB4_01009 PF01636 Phosphotransferase enzyme family CB4_01010 PF13407 Periplasmic binding protein domain CB4_01011 PF00005 ABC transporter CB4_01012 PF02653 CB4_01012 CB4_01013 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01013 PF00672 HAMP domain CB4_01014 PF13242 HAD-hyrolase-like CB4_01014 PF13344 Haloacid dehalogenase-like hydrolase CB4_01015 PF00395 S-layer homology domain CB4_01016 PF00395 S-layer homology domain CB4_01017 PF04608 Phosphatidylglycerophosphatase A CB4_01018 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_01019 PF00293 NUDIX domain CB4_01020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01021 PF03061 Thioesterase superfamily CB4_01022 PF00501 AMP-binding enzyme CB4_01022 PF14535 AMP-binding enzyme C-terminal domain CB4_01023 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CB4_01023 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CB4_01024 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CB4_01024 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CB4_01025 PF00108 Thiolase, N-terminal domain CB4_01025 PF02803 Thiolase, C-terminal domain CB4_01026 PF00108 Thiolase, N-terminal domain CB4_01026 PF02803 Thiolase, C-terminal domain CB4_01027 PF02653 CB4_01027 CB4_01028 PF02653 CB4_01028 CB4_01029 PF00005 ABC transporter CB4_01029 PF12399 Branched-chain amino acid ATP-binding cassette transporter CB4_01030 PF00005 ABC transporter CB4_01030 PF12399 Branched-chain amino acid ATP-binding cassette transporter CB4_01031 PF13458 Periplasmic binding protein CB4_01032 PF05138 Phenylacetic acid catabolic protein CB4_01033 PF06243 Phenylacetic acid degradation B CB4_01034 PF05138 Phenylacetic acid catabolic protein CB4_01035 PF01883 Domain of unknown function DUF59 CB4_01036 PF00171 Aldehyde dehydrogenase family CB4_01037 PF07690 Major Facilitator Superfamily CB4_01038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_01038 PF03466 LysR substrate binding domain CB4_01039 PF01106 NifU-like domain CB4_01040 PF00291 Pyridoxal-phosphate dependent enzyme CB4_01041 PF01053 Cys/Met metabolism PLP-dependent enzyme CB4_01042 PF07315 Protein of unknown function (DUF1462) CB4_01043 PF07293 CB4_01043 CB4_01044 PF01548 CB4_01044 CB4_01044 PF02371 CB4_01044 CB4_01045 PF04055 Radical SAM superfamily CB4_01046 PF01521 Iron-sulphur cluster biosynthesis CB4_01048 PF00989 PAS fold CB4_01048 PF00990 GGDEF domain CB4_01048 PF02743 Cache domain CB4_01048 PF08447 PAS fold CB4_01049 PF00990 GGDEF domain CB4_01049 PF02743 Cache domain CB4_01050 PF00582 Universal stress protein family CB4_01052 PF12788 CB4_01052 CB4_01053 PF00149 Calcineurin-like phosphoesterase CB4_01054 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CB4_01054 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CB4_01057 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_01058 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_01060 PF06725 3D domain CB4_01061 PF02681 CB4_01061 CB4_01062 PF00883 Cytosol aminopeptidase family, catalytic domain CB4_01062 PF02789 Cytosol aminopeptidase family, N-terminal domain CB4_01063 PF00156 Phosphoribosyl transferase domain CB4_01064 PF00860 Permease family CB4_01065 PF00205 Thiamine pyrophosphate enzyme, central domain CB4_01065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CB4_01065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CB4_01066 PF01842 ACT domain CB4_01066 PF10369 Small subunit of acetolactate synthase CB4_01067 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CB4_01067 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain CB4_01068 PF00682 HMGL-like CB4_01068 PF08502 LeuA allosteric (dimerisation) domain CB4_01069 PF00180 Isocitrate/isopropylmalate dehydrogenase CB4_01070 PF02310 B12 binding domain CB4_01070 PF04055 Radical SAM superfamily CB4_01070 PF13311 CB4_01070 CB4_01071 PF10710 CB4_01071 CB4_01072 PF07728 AAA domain (dynein-related subfamily) CB4_01073 PF10117 CB4_01073 CB4_01074 PF05343 M42 glutamyl aminopeptidase CB4_01075 PF14098 CB4_01075 CB4_01076 PF02080 TrkA-C domain CB4_01076 PF02254 TrkA-N domain CB4_01077 PF00588 SpoU rRNA Methylase family CB4_01077 PF08032 RNA 2'-O ribose methyltransferase substrate binding CB4_01078 PF09986 CB4_01078 CB4_01079 PF01409 tRNA synthetases class II core domain (F) CB4_01079 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CB4_01080 PF01588 Putative tRNA binding domain CB4_01080 PF03147 Ferredoxin-fold anticodon binding domain CB4_01080 PF03483 B3/4 domain CB4_01080 PF03484 tRNA synthetase B5 domain CB4_01081 PF05164 Cell division protein ZapA CB4_01082 PF02674 CB4_01082 CB4_01084 PF00488 MutS domain V CB4_01084 PF01713 Smr domain CB4_01085 PF03994 CB4_01085 CB4_01086 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CB4_01086 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CB4_01086 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CB4_01087 PF00534 Glycosyl transferases group 1 CB4_01087 PF13439 Glycosyltransferase Family 4 CB4_01088 PF01609 Transposase DDE domain CB4_01089 PF00534 Glycosyl transferases group 1 CB4_01089 PF13439 Glycosyltransferase Family 4 CB4_01090 PF04932 CB4_01090 CB4_01092 PF14221 CB4_01092 CB4_01093 PF14221 CB4_01093 CB4_01094 PF00534 Glycosyl transferases group 1 CB4_01094 PF13439 Glycosyltransferase Family 4 CB4_01095 PF03023 CB4_01095 CB4_01096 PF01370 NAD dependent epimerase/dehydratase family CB4_01098 PF04230 CB4_01098 CB4_01099 PF00440 Bacterial regulatory proteins, tetR family CB4_01099 PF08359 YsiA-like protein, C-terminal region CB4_01100 PF00378 Enoyl-CoA hydratase/isomerase family CB4_01101 PF01012 Electron transfer flavoprotein domain CB4_01102 PF00766 Electron transfer flavoprotein FAD-binding domain CB4_01102 PF01012 Electron transfer flavoprotein domain CB4_01103 PF00939 Sodium:sulfate symporter transmembrane region CB4_01104 PF00085 Thioredoxin CB4_01106 PF01541 GIY-YIG catalytic domain CB4_01106 PF02151 UvrB/uvrC motif CB4_01106 PF08459 UvrC Helix-hairpin-helix N-terminal CB4_01107 PF00696 Amino acid kinase family CB4_01107 PF13840 ACT domain CB4_01108 PF02632 BioY family CB4_01109 PF00561 alpha/beta hydrolase fold CB4_01110 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CB4_01111 PF00890 FAD binding domain CB4_01111 PF02910 Fumarate reductase flavoprotein C-term CB4_01112 PF13085 2Fe-2S iron-sulfur cluster binding domain CB4_01112 PF13183 4Fe-4S dicluster domain CB4_01113 PF04055 Radical SAM superfamily CB4_01113 PF06968 Biotin and Thiamin Synthesis associated domain CB4_01114 PF13279 Thioesterase-like superfamily CB4_01116 PF00196 Bacterial regulatory proteins, luxR family CB4_01117 PF00929 Exonuclease CB4_01118 PF01177 Asp/Glu/Hydantoin racemase CB4_01119 PF10646 CB4_01119 CB4_01120 PF01138 3' exoribonuclease family, domain 1 CB4_01120 PF03725 3' exoribonuclease family, domain 2 CB4_01121 PF01725 Ham1 family CB4_01122 PF12850 Calcineurin-like phosphoesterase superfamily domain CB4_01124 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CB4_01124 PF05697 Bacterial trigger factor protein (TF) CB4_01124 PF05698 Bacterial trigger factor protein (TF) C-terminus CB4_01125 PF00574 Clp protease CB4_01126 PF06689 ClpX C4-type zinc finger CB4_01126 PF07724 AAA domain (Cdc48 subfamily) CB4_01126 PF10431 C-terminal, D2-small domain, of ClpB protein CB4_01127 PF00004 ATPase family associated with various cellular activities (AAA) CB4_01127 PF05362 Lon protease (S16) C-terminal proteolytic domain CB4_01128 PF00004 ATPase family associated with various cellular activities (AAA) CB4_01128 PF02190 ATP-dependent protease La (LON) domain CB4_01128 PF05362 Lon protease (S16) C-terminal proteolytic domain CB4_01129 PF01926 50S ribosome-binding GTPase CB4_01130 PF00892 EamA-like transporter family CB4_01131 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01132 PF02541 Ppx/GppA phosphatase family CB4_01133 PF02503 Polyphosphate kinase middle domain CB4_01133 PF13089 Polyphosphate kinase N-terminal domain CB4_01133 PF13090 Polyphosphate kinase C-terminal domain CB4_01134 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CB4_01134 PF01488 Shikimate / quinate 5-dehydrogenase CB4_01134 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CB4_01135 PF01578 CB4_01135 CB4_01136 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CB4_01136 PF03900 Porphobilinogen deaminase, C-terminal domain CB4_01137 PF02602 Uroporphyrinogen-III synthase HemD CB4_01138 PF00490 Delta-aminolevulinic acid dehydratase CB4_01139 PF00202 Aminotransferase class-III CB4_01141 PF01476 LysM domain CB4_01143 PF01636 Phosphotransferase enzyme family CB4_01145 PF00133 tRNA synthetases class I (I, L, M and V) CB4_01145 PF08264 Anticodon-binding domain of tRNA CB4_01145 PF10458 Valyl tRNA synthetase tRNA binding arm CB4_01146 PF02875 Mur ligase family, glutamate ligase domain CB4_01146 PF08245 Mur ligase middle domain CB4_01147 PF01225 Mur ligase family, catalytic domain CB4_01147 PF02875 Mur ligase family, glutamate ligase domain CB4_01147 PF08245 Mur ligase middle domain CB4_01148 PF02368 Bacterial Ig-like domain (group 2) CB4_01148 PF16480 CB4_01148 CB4_01150 PF07963 Prokaryotic N-terminal methylation motif CB4_01151 PF07963 Prokaryotic N-terminal methylation motif CB4_01153 PF04294 CB4_01153 CB4_01153 PF12229 Putative peptidoglycan binding domain CB4_01154 PF00437 Type II/IV secretion system protein CB4_01154 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CB4_01155 PF00437 Type II/IV secretion system protein CB4_01156 PF00482 Type II secretion system (T2SS), protein F CB4_01157 PF07963 Prokaryotic N-terminal methylation motif CB4_01158 PF01478 Type IV leader peptidase family CB4_01158 PF06750 CB4_01158 CB4_01159 PF11104 Type IV pilus assembly protein PilM; CB4_01160 PF05137 CB4_01160 CB4_01161 PF04350 Pilus assembly protein, PilO CB4_01162 PF05036 Sporulation related domain CB4_01163 PF02545 Maf-like protein CB4_01164 PF04002 RadC-like JAB domain CB4_01165 PF06723 MreB/Mbl protein CB4_01166 PF04085 rod shape-determining protein MreC CB4_01167 PF04093 CB4_01167 CB4_01168 PF03775 Septum formation inhibitor MinC, C-terminal domain CB4_01169 PF13614 AAA domain CB4_01170 PF01098 CB4_01170 CB4_01171 PF01551 Peptidase family M23 CB4_01172 PF02163 Peptidase family M50 CB4_01173 PF10150 Ribonuclease E/G family CB4_01174 PF00829 Ribosomal prokaryotic L21 protein CB4_01175 PF04327 Protein of unknown function (DUF464) CB4_01176 PF01016 Ribosomal L27 protein CB4_01177 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CB4_01178 PF01018 GTP1/OBG CB4_01178 PF01926 50S ribosome-binding GTPase CB4_01178 PF09269 Domain of unknown function (DUF1967) CB4_01180 PF09335 CB4_01180 CB4_01182 PF00742 Homoserine dehydrogenase CB4_01182 PF01842 ACT domain CB4_01182 PF03447 Homoserine dehydrogenase, NAD binding domain CB4_01183 PF00291 Pyridoxal-phosphate dependent enzyme CB4_01184 PF00288 GHMP kinases N terminal domain CB4_01184 PF08544 GHMP kinases C terminal CB4_01185 PF00800 Prephenate dehydratase CB4_01185 PF01842 ACT domain CB4_01186 PF01636 Phosphotransferase enzyme family CB4_01187 PF01476 LysM domain CB4_01188 PF08955 BofC C-terminal domain CB4_01188 PF08977 Bypass of Forespore C, N terminal CB4_01189 PF01330 RuvA N terminal domain CB4_01189 PF07499 RuvA, C-terminal domain CB4_01189 PF14520 Helix-hairpin-helix domain CB4_01190 PF05491 Holliday junction DNA helicase ruvB C-terminus CB4_01190 PF05496 Holliday junction DNA helicase ruvB N-terminus CB4_01191 PF11146 CB4_01191 CB4_01192 PF03099 Biotin/lipoate A/B protein ligase family CB4_01193 PF08486 CB4_01193 CB4_01194 PF02547 Queuosine biosynthesis protein CB4_01195 PF01702 Queuine tRNA-ribosyltransferase CB4_01196 PF02699 Preprotein translocase subunit CB4_01197 PF13520 Amino acid permease CB4_01198 PF12670 CB4_01198 CB4_01199 PF01943 CB4_01199 CB4_01199 PF14667 Polysaccharide biosynthesis C-terminal domain CB4_01200 PF13797 CB4_01200 CB4_01201 PF02355 Protein export membrane protein CB4_01202 PF02355 Protein export membrane protein CB4_01202 PF07549 SecD/SecF GG Motif CB4_01203 PF01368 DHH family CB4_01203 PF02272 DHHA1 domain CB4_01203 PF10141 CB4_01203 CB4_01204 PF00156 Phosphoribosyl transferase domain CB4_01205 PF02824 TGS domain CB4_01205 PF04607 Region found in RelA / SpoT proteins CB4_01205 PF13291 ACT domain CB4_01205 PF13328 HD domain CB4_01206 PF02580 D-Tyr-tRNA(Tyr) deacylase CB4_01207 PF08241 Methyltransferase domain CB4_01208 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01208 PF00672 HAMP domain CB4_01209 PF04055 Radical SAM superfamily CB4_01211 PF03129 Anticodon binding domain CB4_01211 PF13393 Histidyl-tRNA synthetase CB4_01212 PF00152 tRNA synthetases class II (D, K and N) CB4_01212 PF01336 OB-fold nucleic acid binding domain CB4_01212 PF02938 GAD domain CB4_01213 PF00899 ThiF family CB4_01214 PF05496 Holliday junction DNA helicase ruvB N-terminus CB4_01214 PF12002 MgsA AAA+ ATPase C terminal CB4_01214 PF16193 CB4_01214 CB4_01215 PF02082 Transcriptional regulator CB4_01216 PF00266 Aminotransferase class-V CB4_01217 PF13371 Tetratricopeptide repeat CB4_01217 PF13414 TPR repeat CB4_01218 PF05239 PRC-barrel domain CB4_01221 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01221 PF00672 HAMP domain CB4_01221 PF02743 Cache domain CB4_01222 PF01740 STAS domain CB4_01223 PF01594 CB4_01223 CB4_01224 PF01411 tRNA synthetases class II (A) CB4_01224 PF02272 DHHA1 domain CB4_01224 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CB4_01225 PF06135 CB4_01225 CB4_01226 PF03652 Uncharacterised protein family (UPF0081) CB4_01227 PF06949 CB4_01227 CB4_01228 PF02618 YceG-like family CB4_01229 PF01596 O-methyltransferase CB4_01230 PF01136 CB4_01230 CB4_01231 PF01136 CB4_01231 CB4_01231 PF16325 CB4_01231 CB4_01232 PF00905 Penicillin binding protein transpeptidase domain CB4_01232 PF03717 Penicillin-binding Protein dimerisation domain CB4_01233 PF01569 PAP2 superfamily CB4_01234 PF06778 Chlorite dismutase CB4_01235 PF07075 Protein of unknown function (DUF1343) CB4_01236 PF07070 CB4_01236 CB4_01237 PF05816 CB4_01237 CB4_01238 PF00583 Acetyltransferase (GNAT) family CB4_01239 PF04326 Divergent AAA domain CB4_01240 PF00583 Acetyltransferase (GNAT) family CB4_01241 PF07484 Phage Tail Collar Domain CB4_01242 PF07484 Phage Tail Collar Domain CB4_01243 PF07484 Phage Tail Collar Domain CB4_01244 PF00395 S-layer homology domain CB4_01244 PF02368 Bacterial Ig-like domain (group 2) CB4_01244 PF07532 CB4_01244 CB4_01245 PF00704 Glycosyl hydrolases family 18 CB4_01245 PF01522 Polysaccharide deacetylase CB4_01245 PF13641 Glycosyltransferase like family 2 CB4_01247 PF00072 Response regulator receiver domain CB4_01247 PF00486 Transcriptional regulatory protein, C terminal CB4_01248 PF00512 His Kinase A (phospho-acceptor) domain CB4_01248 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01249 PF10850 CB4_01249 CB4_01251 PF04101 Glycosyltransferase family 28 C-terminal domain CB4_01251 PF06925 CB4_01251 CB4_01252 PF01522 Polysaccharide deacetylase CB4_01253 PF13527 Acetyltransferase (GNAT) domain CB4_01253 PF13530 Sterol carrier protein domain CB4_01254 PF01906 Putative heavy-metal-binding CB4_01255 PF03698 CB4_01255 CB4_01257 PF01966 HD domain CB4_01258 PF07238 PilZ domain CB4_01258 PF12945 Flagellar protein YcgR CB4_01260 PF00501 AMP-binding enzyme CB4_01260 PF13193 AMP-binding enzyme C-terminal domain CB4_01261 PF00106 short chain dehydrogenase CB4_01262 PF02661 Fic/DOC family CB4_01264 PF13650 Aspartyl protease CB4_01269 PF05066 HB1, ASXL, restriction endonuclease HTH domain CB4_01270 PF04286 CB4_01270 CB4_01271 PF04286 CB4_01271 CB4_01276 PF09547 CB4_01276 CB4_01277 PF02517 CAAX protease self-immunity CB4_01278 PF08305 NPCBM/NEW2 domain CB4_01278 PF12796 Ankyrin repeats (3 copies) CB4_01279 PF04542 Sigma-70 region 2 CB4_01279 PF04545 Sigma-70, region 4 CB4_01280 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) CB4_01281 PF00395 S-layer homology domain CB4_01281 PF00963 Cohesin domain CB4_01282 PF00313 'Cold-shock' DNA-binding domain CB4_01283 PF01757 CB4_01283 CB4_01284 PF07238 PilZ domain CB4_01286 PF00206 Lyase CB4_01286 PF10415 Fumarase C C-terminus CB4_01287 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_01288 PF01593 Flavin containing amine oxidoreductase CB4_01289 PF00762 Ferrochelatase CB4_01290 PF01208 Uroporphyrinogen decarboxylase (URO-D) CB4_01291 PF02557 D-alanyl-D-alanine carboxypeptidase CB4_01292 PF04029 2-phosphosulpholactate phosphatase CB4_01293 PF10942 CB4_01293 CB4_01294 PF00246 Zinc carboxypeptidase CB4_01294 PF01476 LysM domain CB4_01295 PF01925 CB4_01295 CB4_01296 PF03600 Citrate transporter CB4_01298 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01298 PF00672 HAMP domain CB4_01298 PF12729 CB4_01298 CB4_01299 PF03734 L,D-transpeptidase catalytic domain CB4_01301 PF00717 Peptidase S24-like CB4_01303 PF00756 Putative esterase CB4_01304 PF00676 Dehydrogenase E1 component CB4_01305 PF02779 Transketolase, pyrimidine binding domain CB4_01305 PF02780 Transketolase, C-terminal domain CB4_01306 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CB4_01306 PF00364 Biotin-requiring enzyme CB4_01306 PF02817 e3 binding domain CB4_01307 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CB4_01307 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_01308 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01309 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CB4_01311 PF09419 CB4_01311 CB4_01312 PF01926 50S ribosome-binding GTPase CB4_01313 PF01488 Shikimate / quinate 5-dehydrogenase CB4_01313 PF08501 Shikimate dehydrogenase substrate binding domain CB4_01314 PF01985 CRS1 / YhbY (CRM) domain CB4_01315 PF01467 Cytidylyltransferase CB4_01316 PF01966 HD domain CB4_01317 PF02410 Oligomerisation domain CB4_01318 PF13649 Methyltransferase domain CB4_01319 PF00133 tRNA synthetases class I (I, L, M and V) CB4_01319 PF08264 Anticodon-binding domain of tRNA CB4_01319 PF13603 Leucyl-tRNA synthetase, Domain 2 CB4_01320 PF04392 ABC transporter substrate binding protein CB4_01321 PF03807 NADP oxidoreductase coenzyme F420-dependent CB4_01321 PF14748 Pyrroline-5-carboxylate reductase dimerisation CB4_01322 PF10752 CB4_01322 CB4_01323 PF10531 SLBB domain CB4_01323 PF12836 Helix-hairpin-helix motif CB4_01325 PF01053 Cys/Met metabolism PLP-dependent enzyme CB4_01326 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CB4_01329 PF00753 Metallo-beta-lactamase superfamily CB4_01329 PF03772 CB4_01329 CB4_01329 PF13567 CB4_01329 CB4_01330 PF04542 Sigma-70 region 2 CB4_01330 PF08281 Sigma-70, region 4 CB4_01331 PF13490 Putative zinc-finger CB4_01332 PF06144 DNA polymerase III, delta subunit CB4_01333 PF01649 Ribosomal protein S20 CB4_01334 PF03418 Germination protease CB4_01335 PF07454 CB4_01335 CB4_01336 PF12438 CB4_01336 CB4_01337 PF00557 Metallopeptidase family M24 CB4_01337 PF01321 Creatinase/Prolidase N-terminal domain CB4_01339 PF00009 Elongation factor Tu GTP binding domain CB4_01339 PF00679 Elongation factor G C-terminus CB4_01339 PF03144 Elongation factor Tu domain 2 CB4_01339 PF06421 GTP-binding protein LepA C-terminus CB4_01340 PF04055 Radical SAM superfamily CB4_01340 PF06969 HemN C-terminal domain CB4_01341 PF01628 HrcA protein C terminal domain CB4_01341 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CB4_01342 PF00118 TCP-1/cpn60 chaperonin family CB4_01343 PF01025 GrpE CB4_01344 PF00012 Hsp70 protein CB4_01345 PF00226 DnaJ domain CB4_01345 PF00684 DnaJ central domain CB4_01345 PF01556 DnaJ C terminal domain CB4_01346 PF06325 Ribosomal protein L11 methyltransferase (PrmA) CB4_01347 PF04452 RNA methyltransferase CB4_01348 PF00919 Uncharacterized protein family UPF0004 CB4_01348 PF04055 Radical SAM superfamily CB4_01349 PF00989 PAS fold CB4_01349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01349 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CB4_01349 PF17203 CB4_01349 CB4_01350 PF00072 Response regulator receiver domain CB4_01350 PF08279 HTH domain CB4_01351 PF00375 Sodium:dicarboxylate symporter family CB4_01352 PF03480 Bacterial extracellular solute-binding protein, family 7 CB4_01353 PF00293 NUDIX domain CB4_01354 PF01791 DeoC/LacD family aldolase CB4_01355 PF00069 Protein kinase domain CB4_01358 PF00226 DnaJ domain CB4_01359 PF00498 FHA domain CB4_01360 PF00498 FHA domain CB4_01361 PF13672 Protein phosphatase 2C CB4_01368 PF05954 Phage late control gene D protein (GPD) CB4_01369 PF00805 Pentapeptide repeats (8 copies) CB4_01369 PF13599 Pentapeptide repeats (9 copies) CB4_01371 PF14107 CB4_01371 CB4_01372 PF05954 Phage late control gene D protein (GPD) CB4_01380 PF01609 Transposase DDE domain CB4_01382 PF00805 Pentapeptide repeats (8 copies) CB4_01384 PF05954 Phage late control gene D protein (GPD) CB4_01385 PF13930 DNA/RNA non-specific endonuclease CB4_01385 PF14107 CB4_01385 CB4_01386 PF14568 SMI1-KNR4 cell-wall CB4_01387 PF14107 CB4_01387 CB4_01389 PF14104 CB4_01389 CB4_01390 PF01609 Transposase DDE domain CB4_01392 PF14433 CB4_01392 CB4_01395 PF01381 Helix-turn-helix CB4_01397 PF02690 CB4_01397 CB4_01399 PF13702 Lysozyme-like CB4_01400 PF00563 EAL domain CB4_01400 PF00990 GGDEF domain CB4_01400 PF13426 PAS domain CB4_01401 PF02698 DUF218 domain CB4_01405 PF03060 Nitronate monooxygenase CB4_01406 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01406 PF00672 HAMP domain CB4_01406 PF12729 CB4_01406 CB4_01407 PF00464 Serine hydroxymethyltransferase CB4_01408 PF00155 Aminotransferase class I and II CB4_01408 PF00392 Bacterial regulatory proteins, gntR family CB4_01409 PF16571 CB4_01409 CB4_01410 PF07552 CB4_01410 CB4_01413 PF00313 'Cold-shock' DNA-binding domain CB4_01414 PF04286 CB4_01414 CB4_01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01416 PF00072 Response regulator receiver domain CB4_01416 PF08664 CB4_01416 CB4_01417 PF01820 D-ala D-ala ligase N-terminus CB4_01417 PF07478 D-ala D-ala ligase C-terminus CB4_01418 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_01418 PF03466 LysR substrate binding domain CB4_01419 PF00106 short chain dehydrogenase CB4_01420 PF04134 CB4_01420 CB4_01421 PF01225 Mur ligase family, catalytic domain CB4_01421 PF02875 Mur ligase family, glutamate ligase domain CB4_01421 PF08245 Mur ligase middle domain CB4_01422 PF01165 Ribosomal protein S21 CB4_01423 PF09424 Yqey-like protein CB4_01424 PF09992 Predicted periplasmic protein (DUF2233) CB4_01426 PF07873 YabP family CB4_01427 PF06898 CB4_01427 CB4_01428 PF02562 PhoH-like protein CB4_01429 PF01966 HD domain CB4_01429 PF07697 CB4_01429 CB4_01429 PF07698 CB4_01429 CB4_01430 PF02130 Uncharacterized protein family UPF0054 CB4_01431 PF01219 Prokaryotic diacylglycerol kinase CB4_01432 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CB4_01433 PF01926 50S ribosome-binding GTPase CB4_01433 PF07650 KH domain CB4_01434 PF14006 CB4_01434 CB4_01435 PF02565 Recombination protein O C terminal CB4_01435 PF11967 Recombination protein O N terminal CB4_01436 PF02091 Glycyl-tRNA synthetase alpha subunit CB4_01437 PF02092 CB4_01437 CB4_01437 PF05746 DALR anticodon binding domain CB4_01438 PF00571 CBS domain CB4_01438 PF08279 HTH domain CB4_01439 PF03618 CB4_01439 CB4_01440 PF01807 CHC2 zinc finger CB4_01440 PF08275 DNA primase catalytic core, N-terminal domain CB4_01440 PF10410 DnaB-helicase binding domain of primase CB4_01440 PF13155 Toprim-like CB4_01441 PF00140 Sigma-70 factor, region 1 CB4_01441 PF03979 Sigma-70 factor, region 1 CB4_01441 PF04539 Sigma-70 region 3 CB4_01441 PF04542 Sigma-70 region 2 CB4_01441 PF04545 Sigma-70, region 4 CB4_01443 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_01443 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_01443 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_01444 PF00501 AMP-binding enzyme CB4_01444 PF13193 AMP-binding enzyme C-terminal domain CB4_01446 PF04816 Family of unknown function (DUF633) CB4_01447 PF01784 NIF3 (NGG1p interacting factor 3) CB4_01449 PF03405 Fatty acid desaturase CB4_01450 PF01381 Helix-turn-helix CB4_01450 PF09587 Bacterial capsule synthesis protein PGA_cap CB4_01451 PF00497 Bacterial extracellular solute-binding proteins, family 3 CB4_01453 PF01523 Putative modulator of DNA gyrase CB4_01454 PF01523 Putative modulator of DNA gyrase CB4_01455 PF01541 GIY-YIG catalytic domain CB4_01456 PF04259 CB4_01456 CB4_01458 PF13649 Methyltransferase domain CB4_01465 PF04909 Amidohydrolase CB4_01466 PF00324 Amino acid permease CB4_01467 PF12900 Pyridoxamine 5'-phosphate oxidase CB4_01468 PF00155 Aminotransferase class I and II CB4_01468 PF00392 Bacterial regulatory proteins, gntR family CB4_01469 PF03060 Nitronate monooxygenase CB4_01471 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin CB4_01472 PF01891 Cobalt uptake substrate-specific transmembrane region CB4_01473 PF02553 CB4_01473 CB4_01474 PF02361 Cobalt transport protein CB4_01475 PF00005 ABC transporter CB4_01476 PF01548 CB4_01476 CB4_01476 PF02371 CB4_01476 CB4_01478 PF12801 CB4_01478 CB4_01478 PF12838 4Fe-4S dicluster domain CB4_01480 PF02492 CobW/HypB/UreG, nucleotide-binding domain CB4_01480 PF07683 Cobalamin synthesis protein cobW C-terminal domain CB4_01481 PF09323 CB4_01481 CB4_01482 PF03773 CB4_01482 CB4_01483 PF00186 Dihydrofolate reductase CB4_01484 PF00210 Ferritin-like domain CB4_01485 PF00578 AhpC/TSA family CB4_01486 PF03009 Glycerophosphoryl diester phosphodiesterase family CB4_01487 PF13649 Methyltransferase domain CB4_01489 PF00909 Ammonium Transporter Family CB4_01490 PF01638 HxlR-like helix-turn-helix CB4_01491 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_01493 PF03976 Polyphosphate kinase 2 (PPK2) CB4_01494 PF00350 Dynamin family CB4_01496 PF05525 CB4_01496 CB4_01498 PF13047 CB4_01498 CB4_01499 PF00082 Subtilase family CB4_01500 PF00501 AMP-binding enzyme CB4_01500 PF13193 AMP-binding enzyme C-terminal domain CB4_01501 PF00929 Exonuclease CB4_01502 PF00005 ABC transporter CB4_01503 PF00528 Binding-protein-dependent transport system inner membrane component CB4_01504 PF09084 NMT1/THI5 like CB4_01505 PF08543 Phosphomethylpyrimidine kinase CB4_01507 PF03551 Transcriptional regulator PadR-like family CB4_01508 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01508 PF00672 HAMP domain CB4_01508 PF08269 Cache domain CB4_01509 PF13649 Methyltransferase domain CB4_01510 PF03061 Thioesterase superfamily CB4_01512 PF03649 CB4_01512 CB4_01513 PF00005 ABC transporter CB4_01514 PF01694 Rhomboid family CB4_01515 PF05681 CB4_01515 CB4_01515 PF05683 Fumarase C-terminus CB4_01516 PF00795 Carbon-nitrogen hydrolase CB4_01518 PF00892 EamA-like transporter family CB4_01519 PF05343 M42 glutamyl aminopeptidase CB4_01522 PF00501 AMP-binding enzyme CB4_01522 PF13193 AMP-binding enzyme C-terminal domain CB4_01524 PF01699 Sodium/calcium exchanger protein CB4_01525 PF01471 Putative peptidoglycan binding domain CB4_01525 PF07486 Cell Wall Hydrolase CB4_01526 PF12840 Helix-turn-helix domain CB4_01527 PF03780 CB4_01527 CB4_01530 PF03061 Thioesterase superfamily CB4_01532 PF06133 Protein of unknown function (DUF964) CB4_01533 PF09902 CB4_01533 CB4_01534 PF01966 HD domain CB4_01535 PF00582 Universal stress protein family CB4_01536 PF01184 CB4_01536 CB4_01537 PF00437 Type II/IV secretion system protein CB4_01538 PF00482 Type II secretion system (T2SS), protein F CB4_01539 PF07963 Prokaryotic N-terminal methylation motif CB4_01542 PF15980 CB4_01542 CB4_01544 PF01202 Shikimate kinase CB4_01545 PF14038 CB4_01545 CB4_01546 PF11079 CB4_01546 CB4_01547 PF00176 SNF2 family N-terminal domain CB4_01547 PF00271 Helicase conserved C-terminal domain CB4_01548 PF07885 Ion channel CB4_01551 PF01571 Aminomethyltransferase folate-binding domain CB4_01551 PF08669 Glycine cleavage T-protein C-terminal barrel domain CB4_01552 PF02347 Glycine cleavage system P-protein CB4_01553 PF02347 Glycine cleavage system P-protein CB4_01554 PF01258 Prokaryotic dksA/traR C4-type zinc finger CB4_01555 PF03099 Biotin/lipoate A/B protein ligase family CB4_01556 PF02867 Ribonucleotide reductase, barrel domain CB4_01557 PF02867 Ribonucleotide reductase, barrel domain CB4_01558 PF06039 CB4_01558 CB4_01559 PF00027 Cyclic nucleotide-binding domain CB4_01560 PF14329 CB4_01560 CB4_01561 PF03831 PhnA protein CB4_01561 PF08274 PhnA Zinc-Ribbon CB4_01562 PF00072 Response regulator receiver domain CB4_01562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01562 PF06580 CB4_01562 CB4_01564 PF12146 Putative lysophospholipase CB4_01565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01565 PF00672 HAMP domain CB4_01565 PF12729 CB4_01565 CB4_01566 PF00528 Binding-protein-dependent transport system inner membrane component CB4_01567 PF00497 Bacterial extracellular solute-binding proteins, family 3 CB4_01568 PF01565 FAD binding domain CB4_01568 PF02913 FAD linked oxidases, C-terminal domain CB4_01569 PF02754 CB4_01569 CB4_01569 PF13183 4Fe-4S dicluster domain CB4_01570 PF13411 MerR HTH family regulatory protein CB4_01571 PF02627 Carboxymuconolactone decarboxylase family CB4_01575 PF07676 WD40-like Beta Propeller Repeat CB4_01577 PF13180 PDZ domain CB4_01577 PF13365 Trypsin-like peptidase domain CB4_01579 PF04461 Protein of unknown function (DUF520) CB4_01580 PF01325 Iron dependent repressor, N-terminal DNA binding domain CB4_01580 PF02742 Iron dependent repressor, metal binding and dimerisation domain CB4_01581 PF01734 Patatin-like phospholipase CB4_01583 PF07136 CB4_01583 CB4_01584 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CB4_01585 PF01220 Dehydroquinase class II CB4_01586 PF00557 Metallopeptidase family M24 CB4_01586 PF01321 Creatinase/Prolidase N-terminal domain CB4_01587 PF01132 Elongation factor P (EF-P) OB domain CB4_01587 PF08207 Elongation factor P (EF-P) KOW-like domain CB4_01587 PF09285 Elongation factor P, C-terminal CB4_01588 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_01590 PF09548 CB4_01590 CB4_01591 PF06686 CB4_01591 CB4_01592 PF06686 CB4_01592 CB4_01593 PF09546 CB4_01593 CB4_01594 PF09581 CB4_01594 CB4_01596 PF12685 SpoIIIAH-like protein CB4_01597 PF00364 Biotin-requiring enzyme CB4_01598 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CB4_01598 PF02785 Biotin carboxylase C-terminal domain CB4_01598 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CB4_01599 PF03780 CB4_01599 CB4_01600 PF03780 CB4_01600 CB4_01601 PF10031 CB4_01601 CB4_01602 PF01029 NusB family CB4_01603 PF00814 Glycoprotease family CB4_01604 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CB4_01604 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CB4_01605 PF02601 CB4_01605 CB4_01605 PF13742 CB4_01605 CB4_01606 PF02609 Exonuclease VII small subunit CB4_01607 PF00348 Polyprenyl synthetase CB4_01608 PF02779 Transketolase, pyrimidine binding domain CB4_01608 PF02780 Transketolase, C-terminal domain CB4_01608 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CB4_01609 PF01479 S4 domain CB4_01609 PF01728 FtsJ-like methyltransferase CB4_01610 PF01513 ATP-NAD kinase CB4_01611 PF01316 Arginine repressor, DNA binding domain CB4_01611 PF02863 Arginine repressor, C-terminal domain CB4_01612 PF02463 RecF/RecN/SMC N terminal domain CB4_01613 PF05580 CB4_01613 CB4_01613 PF13180 PDZ domain CB4_01614 PF00072 Response regulator receiver domain CB4_01614 PF08769 Sporulation initiation factor Spo0A C terminal CB4_01615 PF09388 Spo0E like sporulation regulatory protein CB4_01616 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_01617 PF02811 PHP domain CB4_01619 PF04608 Phosphatidylglycerophosphatase A CB4_01622 PF16258 CB4_01622 CB4_01624 PF08968 Domain of unknown function (DUF1885) CB4_01625 PF01047 MarR family CB4_01626 PF11256 CB4_01626 CB4_01627 PF01276 Orn/Lys/Arg decarboxylase, major domain CB4_01627 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CB4_01628 PF03060 Nitronate monooxygenase CB4_01629 PF06335 Protein of unknown function (DUF1054) CB4_01631 PF00883 Cytosol aminopeptidase family, catalytic domain CB4_01631 PF02789 Cytosol aminopeptidase family, N-terminal domain CB4_01632 PF14584 CB4_01632 CB4_01633 PF02675 S-adenosylmethionine decarboxylase CB4_01635 PF00158 Sigma-54 interaction domain CB4_01635 PF00571 CBS domain CB4_01635 PF00989 PAS fold CB4_01638 PF01243 Pyridoxamine 5'-phosphate oxidase CB4_01639 PF09580 CB4_01639 CB4_01640 PF02562 PhoH-like protein CB4_01640 PF13638 PIN domain CB4_01641 PF00753 Metallo-beta-lactamase superfamily CB4_01642 PF00990 GGDEF domain CB4_01642 PF13185 GAF domain CB4_01643 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase CB4_01644 PF12840 Helix-turn-helix domain CB4_01645 PF03960 ArsC family CB4_01646 PF01367 5'-3' exonuclease, C-terminal SAM fold CB4_01646 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CB4_01647 PF00378 Enoyl-CoA hydratase/isomerase family CB4_01649 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CB4_01649 PF02785 Biotin carboxylase C-terminal domain CB4_01649 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CB4_01650 PF00364 Biotin-requiring enzyme CB4_01651 PF00682 HMGL-like CB4_01652 PF01039 Carboxyl transferase domain CB4_01653 PF00440 Bacterial regulatory proteins, tetR family CB4_01654 PF10079 CB4_01654 CB4_01655 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CB4_01655 PF05221 S-adenosyl-L-homocysteine hydrolase CB4_01656 PF01795 MraW methylase family CB4_01657 PF04977 Septum formation initiator CB4_01658 PF00905 Penicillin binding protein transpeptidase domain CB4_01658 PF03717 Penicillin-binding Protein dimerisation domain CB4_01658 PF03793 PASTA domain CB4_01659 PF00905 Penicillin binding protein transpeptidase domain CB4_01659 PF03717 Penicillin-binding Protein dimerisation domain CB4_01659 PF03793 PASTA domain CB4_01660 PF01225 Mur ligase family, catalytic domain CB4_01660 PF02875 Mur ligase family, glutamate ligase domain CB4_01660 PF08245 Mur ligase middle domain CB4_01661 PF00953 Glycosyl transferase family 4 CB4_01661 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CB4_01662 PF02875 Mur ligase family, glutamate ligase domain CB4_01662 PF08245 Mur ligase middle domain CB4_01663 PF01098 CB4_01663 CB4_01664 PF03033 Glycosyltransferase family 28 N-terminal domain CB4_01664 PF04101 Glycosyltransferase family 28 C-terminal domain CB4_01665 PF01565 FAD binding domain CB4_01665 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CB4_01666 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CB4_01667 PF03799 Cell division protein FtsQ CB4_01667 PF08478 POTRA domain, FtsQ-type CB4_01668 PF05949 Bacterial protein of unknown function (DUF881) CB4_01669 PF05949 Bacterial protein of unknown function (DUF881) CB4_01670 PF06947 CB4_01670 CB4_01671 PF02491 SHS2 domain inserted in FTSA CB4_01671 PF14450 Cell division protein FtsA CB4_01672 PF00091 Tubulin/FtsZ family, GTPase domain CB4_01672 PF12327 FtsZ family, C-terminal domain CB4_01673 PF09997 CB4_01673 CB4_01674 PF03419 CB4_01674 CB4_01675 PF04542 Sigma-70 region 2 CB4_01675 PF04545 Sigma-70, region 4 CB4_01676 PF04539 Sigma-70 region 3 CB4_01676 PF04542 Sigma-70 region 2 CB4_01676 PF04545 Sigma-70, region 4 CB4_01677 PF00497 Bacterial extracellular solute-binding proteins, family 3 CB4_01678 PF05239 PRC-barrel domain CB4_01679 PF02578 Multi-copper polyphenol oxidoreductase laccase CB4_01680 PF01168 Alanine racemase, N-terminal domain CB4_01681 PF04472 Protein of unknown function (DUF552) CB4_01682 PF02325 CB4_01682 CB4_01683 PF01479 S4 domain CB4_01684 PF05103 DivIVA protein CB4_01685 PF00133 tRNA synthetases class I (I, L, M and V) CB4_01685 PF06827 Zinc finger found in FPG and IleRS CB4_01685 PF08264 Anticodon-binding domain of tRNA CB4_01686 PF01252 CB4_01686 CB4_01687 PF00849 RNA pseudouridylate synthase CB4_01687 PF01479 S4 domain CB4_01688 PF00156 Phosphoribosyl transferase domain CB4_01689 PF00860 Permease family CB4_01690 PF01979 Amidohydrolase family CB4_01691 PF00117 Glutamine amidotransferase class-I CB4_01691 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CB4_01692 PF02142 MGS-like domain CB4_01692 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CB4_01692 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CB4_01693 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CB4_01694 PF01180 Dihydroorotate dehydrogenase CB4_01695 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CB4_01696 PF00156 Phosphoribosyl transferase domain CB4_01698 PF05685 Putative restriction endonuclease CB4_01699 PF01943 CB4_01699 CB4_01699 PF07833 Copper amine oxidase N-terminal domain CB4_01699 PF14667 Polysaccharide biosynthesis C-terminal domain CB4_01700 PF05670 CB4_01700 CB4_01700 PF05833 Fibronectin-binding protein A N-terminus (FbpA) CB4_01702 PF00122 E1-E2 ATPase CB4_01702 PF00689 Cation transporting ATPase, C-terminus CB4_01702 PF00690 Cation transporter/ATPase, N-terminus CB4_01702 PF00702 haloacid dehalogenase-like hydrolase CB4_01703 PF01678 Diaminopimelate epimerase CB4_01704 PF03755 CB4_01704 CB4_01704 PF08340 CB4_01704 CB4_01705 PF04025 CB4_01705 CB4_01706 PF00625 Guanylate kinase CB4_01707 PF01192 RNA polymerase Rpb6 CB4_01708 PF02441 Flavoprotein CB4_01708 PF04127 DNA / pantothenate metabolism flavoprotein CB4_01709 PF00270 DEAD/DEAH box helicase CB4_01709 PF00271 Helicase conserved C-terminal domain CB4_01710 PF01327 Polypeptide deformylase CB4_01711 PF00551 Formyl transferase CB4_01711 PF02911 Formyl transferase, C-terminal domain CB4_01712 PF01029 NusB family CB4_01712 PF01189 NOL1/NOP2/sun family CB4_01713 PF04055 Radical SAM superfamily CB4_01713 PF13394 4Fe-4S single cluster domain CB4_01714 PF13672 Protein phosphatase 2C CB4_01715 PF00069 Protein kinase domain CB4_01715 PF03793 PASTA domain CB4_01716 PF03193 Protein of unknown function, DUF258 CB4_01716 PF16745 CB4_01716 CB4_01717 PF00834 Ribulose-phosphate 3 epimerase family CB4_01718 PF00830 Ribosomal L28 family CB4_01719 PF03780 CB4_01719 CB4_01720 PF02734 DAK2 domain CB4_01720 PF13684 Dihydroxyacetone kinase family CB4_01721 PF02645 Uncharacterised protein, DegV family COG1307 CB4_01722 PF00270 DEAD/DEAH box helicase CB4_01722 PF00271 Helicase conserved C-terminal domain CB4_01722 PF17191 CB4_01722 CB4_01723 PF02308 CB4_01723 CB4_01725 PF03602 Conserved hypothetical protein 95 CB4_01726 PF01467 Cytidylyltransferase CB4_01728 PF01734 Patatin-like phospholipase CB4_01729 PF05362 Lon protease (S16) C-terminal proteolytic domain CB4_01729 PF13180 PDZ domain CB4_01730 PF05636 HIGH Nucleotidyl Transferase CB4_01731 PF02620 CB4_01731 CB4_01732 PF01783 Ribosomal L32p protein family CB4_01733 PF03061 Thioesterase superfamily CB4_01733 PF08220 DeoR-like helix-turn-helix domain CB4_01734 PF02504 Fatty acid synthesis protein CB4_01735 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CB4_01735 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CB4_01736 PF00698 Acyl transferase domain CB4_01737 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_01738 PF00550 Phosphopantetheine attachment site CB4_01739 PF00109 Beta-ketoacyl synthase, N-terminal domain CB4_01739 PF02801 Beta-ketoacyl synthase, C-terminal domain CB4_01740 PF00035 Double-stranded RNA binding motif CB4_01740 PF14622 Ribonuclease-III-like CB4_01741 PF04055 Radical SAM superfamily CB4_01741 PF16199 CB4_01741 CB4_01742 PF02463 RecF/RecN/SMC N terminal domain CB4_01742 PF06470 SMC proteins Flexible Hinge Domain CB4_01743 PF00448 SRP54-type protein, GTPase domain CB4_01743 PF02881 SRP54-type protein, helical bundle domain CB4_01744 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CB4_01745 PF00448 SRP54-type protein, GTPase domain CB4_01745 PF02881 SRP54-type protein, helical bundle domain CB4_01745 PF02978 Signal peptide binding domain CB4_01746 PF00886 Ribosomal protein S16 CB4_01747 PF13083 KH domain CB4_01748 PF11068 YlqD protein CB4_01749 PF01782 RimM N-terminal domain CB4_01749 PF05239 PRC-barrel domain CB4_01750 PF01746 tRNA (Guanine-1)-methyltransferase CB4_01751 PF01245 Ribosomal protein L19 CB4_01752 PF00717 Peptidase S24-like CB4_01753 PF01926 50S ribosome-binding GTPase CB4_01754 PF01351 Ribonuclease HII CB4_01756 PF01312 FlhB HrpN YscU SpaS Family CB4_01757 PF02021 Uncharacterised protein family UPF0102 CB4_01758 PF01078 Magnesium chelatase, subunit ChlI CB4_01758 PF13541 Subunit ChlI of Mg-chelatase CB4_01759 PF00239 Resolvase, N terminal domain CB4_01759 PF07508 Recombinase CB4_01759 PF13408 Recombinase zinc beta ribbon domain CB4_01765 PF09851 CB4_01765 CB4_01765 PF14472 CB4_01765 CB4_01766 PF01381 Helix-turn-helix CB4_01767 PF01381 Helix-turn-helix CB4_01773 PF01381 Helix-turn-helix CB4_01779 PF07352 Bacteriophage Mu Gam like protein CB4_01780 PF06378 CB4_01780 CB4_01782 PF01695 IstB-like ATP binding protein CB4_01784 PF05866 Endodeoxyribonuclease RusA CB4_01789 PF09643 YopX protein CB4_01791 PF00196 Bacterial regulatory proteins, luxR family CB4_01795 PF01844 HNH endonuclease CB4_01797 PF05119 CB4_01797 CB4_01798 PF03354 CB4_01798 CB4_01799 PF04860 Phage portal protein CB4_01800 PF00574 Clp protease CB4_01801 PF05065 Phage capsid family CB4_01802 PF05135 Phage gp6-like head-tail connector protein CB4_01804 PF05521 Phage head-tail joining protein CB4_01805 PF04883 CB4_01805 CB4_01806 PF11367 Protein of unknown function (DUF3168) CB4_01807 PF04630 CB4_01807 CB4_01810 PF10145 CB4_01810 CB4_01819 PF01520 N-acetylmuramoyl-L-alanine amidase CB4_01820 PF00211 Adenylate and Guanylate cyclase catalytic domain CB4_01822 PF00211 Adenylate and Guanylate cyclase catalytic domain CB4_01825 PF01381 Helix-turn-helix CB4_01826 PF13335 CB4_01826 CB4_01827 PF08970 Sporulation inhibitor A CB4_01828 PF00549 CoA-ligase CB4_01828 PF08442 ATP-grasp domain CB4_01829 PF00549 CoA-ligase CB4_01829 PF02629 CoA binding domain CB4_01830 PF02481 DNA recombination-mediator protein A CB4_01831 PF01131 DNA topoisomerase CB4_01831 PF01396 CB4_01831 CB4_01831 PF01751 Toprim domain CB4_01832 PF01134 Glucose inhibited division protein A CB4_01833 PF00589 Phage integrase family CB4_01833 PF02899 Phage integrase, N-terminal SAM-like domain CB4_01834 PF00227 Proteasome subunit CB4_01835 PF00004 ATPase family associated with various cellular activities (AAA) CB4_01835 PF07724 AAA domain (Cdc48 subfamily) CB4_01835 PF10431 C-terminal, D2-small domain, of ClpB protein CB4_01836 PF06018 CodY GAF-like domain CB4_01836 PF08222 CodY helix-turn-helix domain CB4_01837 PF00460 Flagella basal body rod protein CB4_01838 PF00460 Flagella basal body rod protein CB4_01838 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CB4_01839 PF02049 CB4_01839 CB4_01840 PF01514 Secretory protein of YscJ/FliF family CB4_01840 PF08345 CB4_01840 CB4_01841 PF01706 FliG C-terminal domain CB4_01841 PF14841 FliG middle domain CB4_01841 PF14842 FliG N-terminal domain CB4_01842 PF02108 CB4_01842 CB4_01843 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CB4_01843 PF02874 ATP synthase alpha/beta family, beta-barrel domain CB4_01844 PF02050 Flagellar FliJ protein CB4_01845 PF03448 MgtE intracellular N domain CB4_01846 PF02120 Flagellar hook-length control protein FliK CB4_01847 PF03963 CB4_01847 CB4_01848 PF12611 CB4_01848 CB4_01849 PF00460 Flagella basal body rod protein CB4_01849 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CB4_01850 PF06289 CB4_01850 CB4_01851 PF03748 CB4_01851 CB4_01852 PF01052 Surface presentation of antigens (SPOA) CB4_01852 PF02154 Flagellar motor switch protein FliM CB4_01853 PF01052 Surface presentation of antigens (SPOA) CB4_01853 PF04509 CheC-like family CB4_01854 PF00072 Response regulator receiver domain CB4_01855 PF04347 CB4_01855 CB4_01856 PF00813 CB4_01856 CB4_01857 PF01313 CB4_01857 CB4_01858 PF01311 CB4_01858 CB4_01859 PF01312 FlhB HrpN YscU SpaS Family CB4_01860 PF00771 FHIPEP family CB4_01861 PF00448 SRP54-type protein, GTPase domain CB4_01862 PF10609 ParA/MinD ATPase like CB4_01863 PF00072 Response regulator receiver domain CB4_01864 PF01339 CheB methylesterase CB4_01865 PF01584 CheW-like domain CB4_01865 PF01627 Hpt domain CB4_01865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01865 PF02895 Signal transducing histidine kinase, homodimeric domain CB4_01865 PF07194 P2 response regulator binding domain CB4_01866 PF01584 CheW-like domain CB4_01867 PF04509 CheC-like family CB4_01868 PF03975 CheD chemotactic sensory transduction CB4_01870 PF04539 Sigma-70 region 3 CB4_01870 PF04542 Sigma-70 region 2 CB4_01870 PF04545 Sigma-70, region 4 CB4_01871 PF03961 CB4_01871 CB4_01874 PF00318 Ribosomal protein S2 CB4_01875 PF00889 Elongation factor TS CB4_01876 PF00696 Amino acid kinase family CB4_01877 PF01765 Ribosome recycling factor CB4_01878 PF01255 Putative undecaprenyl diphosphate synthase CB4_01879 PF01148 Cytidylyltransferase family CB4_01880 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CB4_01880 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal CB4_01880 PF13288 DXP reductoisomerase C-terminal domain CB4_01881 PF02163 Peptidase family M50 CB4_01881 PF13180 PDZ domain CB4_01882 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CB4_01882 PF03129 Anticodon binding domain CB4_01882 PF04073 Aminoacyl-tRNA editing domain CB4_01883 PF00929 Exonuclease CB4_01883 PF01336 OB-fold nucleic acid binding domain CB4_01883 PF02811 PHP domain CB4_01883 PF07733 Bacterial DNA polymerase III alpha subunit CB4_01883 PF11490 CB4_01883 CB4_01883 PF14480 CB4_01883 CB4_01883 PF14579 Helix-hairpin-helix motif CB4_01884 PF02576 Uncharacterised BCR, YhbC family COG0779 CB4_01884 PF17384 CB4_01884 CB4_01885 PF00575 S1 RNA binding domain CB4_01885 PF08529 NusA N-terminal domain CB4_01885 PF13184 NusA-like KH domain CB4_01886 PF04296 Protein of unknown function (DUF448) CB4_01887 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CB4_01888 PF00009 Elongation factor Tu GTP binding domain CB4_01888 PF04760 Translation initiation factor IF-2, N-terminal region CB4_01888 PF11987 Translation-initiation factor 2 CB4_01889 PF02033 Ribosome-binding factor A CB4_01890 PF01368 DHH family CB4_01890 PF02272 DHHA1 domain CB4_01891 PF01509 TruB family pseudouridylate synthase (N terminal domain) CB4_01891 PF16198 CB4_01891 CB4_01892 PF01687 Riboflavin kinase CB4_01892 PF06574 FAD synthetase CB4_01893 PF00312 Ribosomal protein S15 CB4_01894 PF00013 KH domain CB4_01894 PF00575 S1 RNA binding domain CB4_01894 PF01138 3' exoribonuclease family, domain 1 CB4_01894 PF03725 3' exoribonuclease family, domain 2 CB4_01894 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CB4_01895 PF01522 Polysaccharide deacetylase CB4_01896 PF00675 Insulinase (Peptidase family M16) CB4_01896 PF05193 Peptidase M16 inactive domain CB4_01897 PF00692 dUTPase CB4_01898 PF00149 Calcineurin-like phosphoesterase CB4_01899 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CB4_01899 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CB4_01900 PF02655 ATP-grasp domain CB4_01901 PF01370 NAD dependent epimerase/dehydratase family CB4_01902 PF00753 Metallo-beta-lactamase superfamily CB4_01903 PF00501 AMP-binding enzyme CB4_01904 PF13480 Acetyltransferase (GNAT) domain CB4_01906 PF05239 PRC-barrel domain CB4_01907 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CB4_01907 PF16924 CB4_01907 CB4_01908 PF02441 Flavoprotein CB4_01909 PF01118 Semialdehyde dehydrogenase, NAD binding domain CB4_01909 PF02774 Semialdehyde dehydrogenase, dimerisation domain CB4_01910 PF00696 Amino acid kinase family CB4_01910 PF13840 ACT domain CB4_01911 PF00701 Dihydrodipicolinate synthetase family CB4_01912 PF00753 Metallo-beta-lactamase superfamily CB4_01912 PF07521 RNA-metabolising metallo-beta-lactamase CB4_01913 PF01385 CB4_01913 CB4_01913 PF07282 CB4_01913 CB4_01913 PF12323 CB4_01913 CB4_01914 PF08002 Protein of unknown function (DUF1697) CB4_01915 PF01872 RibD C-terminal domain CB4_01917 PF10720 CB4_01917 CB4_01918 PF13243 Prenyltransferase-like CB4_01918 PF13249 Prenyltransferase-like CB4_01921 PF01609 Transposase DDE domain CB4_01923 PF06689 ClpX C4-type zinc finger CB4_01926 PF13551 Winged helix-turn helix CB4_01926 PF13592 CB4_01926 CB4_01927 PF13358 DDE superfamily endonuclease CB4_01929 PF00175 Oxidoreductase NAD-binding domain CB4_01929 PF00667 FAD binding domain CB4_01931 PF00440 Bacterial regulatory proteins, tetR family CB4_01932 PF09858 CB4_01932 CB4_01935 PF00652 Ricin-type beta-trefoil lectin domain CB4_01935 PF01477 PLAT/LH2 domain CB4_01935 PF13385 Concanavalin A-like lectin/glucanases superfamily CB4_01936 PF13546 CB4_01936 CB4_01938 PF13087 AAA domain CB4_01938 PF13195 CB4_01938 CB4_01940 PF01588 Putative tRNA binding domain CB4_01941 PF03358 NADPH-dependent FMN reductase CB4_01942 PF00561 alpha/beta hydrolase fold CB4_01943 PF00395 S-layer homology domain CB4_01943 PF12733 CB4_01943 CB4_01943 PF13540 Regulator of chromosome condensation (RCC1) repeat CB4_01945 PF00196 Bacterial regulatory proteins, luxR family CB4_01946 PF01425 Amidase CB4_01947 PF01764 Lipase (class 3) CB4_01948 PF01823 MAC/Perforin domain CB4_01950 PF07690 Major Facilitator Superfamily CB4_01951 PF00176 SNF2 family N-terminal domain CB4_01951 PF00271 Helicase conserved C-terminal domain CB4_01952 PF00109 Beta-ketoacyl synthase, N-terminal domain CB4_01952 PF02801 Beta-ketoacyl synthase, C-terminal domain CB4_01953 PF00512 His Kinase A (phospho-acceptor) domain CB4_01953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_01954 PF01061 CB4_01954 CB4_01954 PF12698 ABC-2 family transporter protein CB4_01955 PF02353 Mycolic acid cyclopropane synthetase CB4_01956 PF03006 CB4_01956 CB4_01957 PF07833 Copper amine oxidase N-terminal domain CB4_01961 PF01380 SIS domain CB4_01961 PF13522 Glutamine amidotransferase domain CB4_01962 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_01963 PF06271 CB4_01963 CB4_01964 PF09992 Predicted periplasmic protein (DUF2233) CB4_01966 PF01098 CB4_01966 CB4_01967 PF01709 Transcriptional regulator CB4_01969 PF01476 LysM domain CB4_01970 PF01925 CB4_01970 CB4_01971 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CB4_01972 PF02082 Transcriptional regulator CB4_01974 PF00155 Aminotransferase class I and II CB4_01975 PF00155 Aminotransferase class I and II CB4_01975 PF00392 Bacterial regulatory proteins, gntR family CB4_01977 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CB4_01978 PF01323 DSBA-like thioredoxin domain CB4_01979 PF01435 Peptidase family M48 CB4_01980 PF00317 Ribonucleotide reductase, all-alpha domain CB4_01980 PF02867 Ribonucleotide reductase, barrel domain CB4_01981 PF01541 GIY-YIG catalytic domain CB4_01981 PF07460 NUMOD3 motif (2 copies) CB4_01982 PF02867 Ribonucleotide reductase, barrel domain CB4_01983 PF00268 Ribonucleotide reductase, small chain CB4_01984 PF04012 CB4_01984 CB4_01985 PF13785 CB4_01985 CB4_01986 PF14042 CB4_01986 CB4_01987 PF00501 AMP-binding enzyme CB4_01987 PF13193 AMP-binding enzyme C-terminal domain CB4_01988 PF12323 CB4_01988 CB4_01989 PF01385 CB4_01989 CB4_01989 PF07282 CB4_01989 CB4_01990 PF01614 Bacterial transcriptional regulator CB4_01991 PF02682 Allophanate hydrolase subunit 1 CB4_01992 PF02626 Allophanate hydrolase subunit 2 CB4_01993 PF03746 LamB/YcsF family CB4_01994 PF00158 Sigma-54 interaction domain CB4_01994 PF00571 CBS domain CB4_01994 PF00989 PAS fold CB4_01994 PF02954 Bacterial regulatory protein, Fis family CB4_01995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_01995 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_01995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_01996 PF00108 Thiolase, N-terminal domain CB4_01996 PF02803 Thiolase, C-terminal domain CB4_01998 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_01999 PF00557 Metallopeptidase family M24 CB4_02000 PF00072 Response regulator receiver domain CB4_02000 PF00512 His Kinase A (phospho-acceptor) domain CB4_02000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02000 PF06580 CB4_02000 CB4_02000 PF07695 CB4_02000 CB4_02001 PF00072 Response regulator receiver domain CB4_02001 PF00512 His Kinase A (phospho-acceptor) domain CB4_02001 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02001 PF06580 CB4_02001 CB4_02001 PF07695 CB4_02001 CB4_02002 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CB4_02002 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CB4_02003 PF00324 Amino acid permease CB4_02004 PF00440 Bacterial regulatory proteins, tetR family CB4_02004 PF16859 CB4_02004 CB4_02005 PF07690 Major Facilitator Superfamily CB4_02006 PF01047 MarR family CB4_02007 PF00171 Aldehyde dehydrogenase family CB4_02008 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CB4_02009 PF00120 Glutamine synthetase, catalytic domain CB4_02010 PF07722 Peptidase C26 CB4_02011 PF06314 Acetoacetate decarboxylase (ADC) CB4_02012 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_02014 PF00990 GGDEF domain CB4_02014 PF02743 Cache domain CB4_02015 PF02583 Metal-sensitive transcriptional repressor CB4_02016 PF00403 Heavy-metal-associated domain CB4_02017 PF00122 E1-E2 ATPase CB4_02017 PF00403 Heavy-metal-associated domain CB4_02017 PF00702 haloacid dehalogenase-like hydrolase CB4_02018 PF03358 NADPH-dependent FMN reductase CB4_02020 PF13673 Acetyltransferase (GNAT) domain CB4_02021 PF01047 MarR family CB4_02022 PF00072 Response regulator receiver domain CB4_02022 PF00486 Transcriptional regulatory protein, C terminal CB4_02023 PF00512 His Kinase A (phospho-acceptor) domain CB4_02023 PF00672 HAMP domain CB4_02023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02025 PF14398 CB4_02025 CB4_02026 PF01177 Asp/Glu/Hydantoin racemase CB4_02027 PF02875 Mur ligase family, glutamate ligase domain CB4_02027 PF08245 Mur ligase middle domain CB4_02036 PF14398 CB4_02036 CB4_02037 PF14398 CB4_02037 CB4_02038 PF02875 Mur ligase family, glutamate ligase domain CB4_02038 PF08245 Mur ligase middle domain CB4_02039 PF09924 Uncharacterized conserved protein (DUF2156) CB4_02040 PF13437 HlyD family secretion protein CB4_02040 PF13533 Biotin-lipoyl like CB4_02041 PF02687 CB4_02041 CB4_02041 PF12704 MacB-like periplasmic core domain CB4_02043 PF00005 ABC transporter CB4_02044 PF01609 Transposase DDE domain CB4_02045 PF10710 CB4_02045 CB4_02047 PF00171 Aldehyde dehydrogenase family CB4_02048 PF01545 Cation efflux family CB4_02049 PF00581 Rhodanese-like domain CB4_02051 PF02322 CB4_02051 CB4_02052 PF13343 Bacterial extracellular solute-binding protein CB4_02053 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase CB4_02054 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02055 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02056 PF00005 ABC transporter CB4_02056 PF08402 TOBE domain CB4_02057 PF00455 CB4_02057 CB4_02057 PF08220 DeoR-like helix-turn-helix domain CB4_02058 PF08282 haloacid dehalogenase-like hydrolase CB4_02059 PF00893 Small Multidrug Resistance protein CB4_02060 PF00893 Small Multidrug Resistance protein CB4_02061 PF00291 Pyridoxal-phosphate dependent enzyme CB4_02062 PF01381 Helix-turn-helix CB4_02064 PF00005 ABC transporter CB4_02065 PF12679 CB4_02065 CB4_02067 PF00395 S-layer homology domain CB4_02067 PF13620 Carboxypeptidase regulatory-like domain CB4_02068 PF01809 CB4_02068 CB4_02069 PF02492 CobW/HypB/UreG, nucleotide-binding domain CB4_02069 PF07683 Cobalamin synthesis protein cobW C-terminal domain CB4_02070 PF07457 CB4_02070 CB4_02071 PF04020 CB4_02071 CB4_02075 PF09335 CB4_02075 CB4_02077 PF00574 Clp protease CB4_02078 PF14035 CB4_02078 CB4_02079 PF05977 Transmembrane secretion effector CB4_02081 PF01841 Transglutaminase-like superfamily CB4_02082 PF01580 FtsK/SpoIIIE family CB4_02082 PF09397 Ftsk gamma domain CB4_02083 PF01741 Large-conductance mechanosensitive channel, MscL CB4_02084 PF00571 CBS domain CB4_02085 PF01432 Peptidase family M3 CB4_02085 PF08439 Oligopeptidase F CB4_02087 PF12822 Protein of unknown function (DUF3816) CB4_02089 PF00072 Response regulator receiver domain CB4_02089 PF00486 Transcriptional regulatory protein, C terminal CB4_02090 PF00512 His Kinase A (phospho-acceptor) domain CB4_02090 PF00672 HAMP domain CB4_02090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02091 PF13115 CB4_02091 CB4_02092 PF14398 CB4_02092 CB4_02093 PF10646 CB4_02093 CB4_02094 PF04397 LytTr DNA-binding domain CB4_02095 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CB4_02095 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CB4_02096 PF00580 UvrD/REP helicase N-terminal domain CB4_02096 PF13361 UvrD-like helicase C-terminal domain CB4_02097 PF13509 S1 domain CB4_02099 PF01548 CB4_02099 CB4_02099 PF02371 CB4_02099 CB4_02101 PF07833 Copper amine oxidase N-terminal domain CB4_02101 PF13637 Ankyrin repeats (many copies) CB4_02102 PF00565 Staphylococcal nuclease homologue CB4_02102 PF01476 LysM domain CB4_02103 PF02810 SEC-C motif CB4_02104 PF13520 Amino acid permease CB4_02105 PF00378 Enoyl-CoA hydratase/isomerase family CB4_02105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CB4_02105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CB4_02106 PF00108 Thiolase, N-terminal domain CB4_02106 PF02803 Thiolase, C-terminal domain CB4_02107 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_02107 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_02107 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_02108 PF00501 AMP-binding enzyme CB4_02108 PF13193 AMP-binding enzyme C-terminal domain CB4_02110 PF00633 Helix-hairpin-helix motif CB4_02110 PF00730 HhH-GPD superfamily base excision DNA repair protein CB4_02110 PF10576 Iron-sulfur binding domain of endonuclease III CB4_02112 PF01432 Peptidase family M3 CB4_02112 PF08439 Oligopeptidase F CB4_02114 PF01520 N-acetylmuramoyl-L-alanine amidase CB4_02114 PF07833 Copper amine oxidase N-terminal domain CB4_02114 PF11741 AMIN domain CB4_02115 PF02588 CB4_02115 CB4_02115 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_02116 PF01569 PAP2 superfamily CB4_02117 PF09992 Predicted periplasmic protein (DUF2233) CB4_02118 PF14070 CB4_02118 CB4_02119 PF00892 EamA-like transporter family CB4_02121 PF00313 'Cold-shock' DNA-binding domain CB4_02122 PF02559 CarD-like/TRCF domain CB4_02123 PF00239 Resolvase, N terminal domain CB4_02123 PF07508 Recombinase CB4_02123 PF13408 Recombinase zinc beta ribbon domain CB4_02124 PF12867 DinB superfamily CB4_02129 PF00704 Glycosyl hydrolases family 18 CB4_02129 PF01476 LysM domain CB4_02130 PF04226 CB4_02130 CB4_02131 PF00753 Metallo-beta-lactamase superfamily CB4_02132 PF01170 Putative RNA methylase family UPF0020 CB4_02132 PF02926 THUMP domain CB4_02135 PF00563 EAL domain CB4_02135 PF00990 GGDEF domain CB4_02135 PF17159 CB4_02135 CB4_02139 PF03781 Sulfatase-modifying factor enzyme 1 CB4_02140 PF00440 Bacterial regulatory proteins, tetR family CB4_02141 PF01593 Flavin containing amine oxidoreductase CB4_02142 PF00072 Response regulator receiver domain CB4_02142 PF00158 Sigma-54 interaction domain CB4_02142 PF02954 Bacterial regulatory protein, Fis family CB4_02143 PF00512 His Kinase A (phospho-acceptor) domain CB4_02143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02143 PF08448 PAS fold CB4_02143 PF13185 GAF domain CB4_02144 PF00465 Iron-containing alcohol dehydrogenase CB4_02145 PF00465 Iron-containing alcohol dehydrogenase CB4_02146 PF02627 Carboxymuconolactone decarboxylase family CB4_02147 PF01619 Proline dehydrogenase CB4_02148 PF00571 CBS domain CB4_02151 PF02110 Hydroxyethylthiazole kinase family CB4_02152 PF02581 Thiamine monophosphate synthase/TENI CB4_02153 PF00204 DNA gyrase B CB4_02153 PF00986 DNA gyrase B subunit, carboxyl terminus CB4_02153 PF01751 Toprim domain CB4_02153 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02154 PF00521 DNA gyrase/topoisomerase IV, subunit A CB4_02154 PF03989 DNA gyrase C-terminal domain, beta-propeller CB4_02155 PF00575 S1 RNA binding domain CB4_02156 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CB4_02156 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CB4_02157 PF00440 Bacterial regulatory proteins, tetR family CB4_02158 PF00067 Cytochrome P450 CB4_02158 PF00175 Oxidoreductase NAD-binding domain CB4_02158 PF00258 Flavodoxin CB4_02158 PF00667 FAD binding domain CB4_02160 PF00296 Luciferase-like monooxygenase CB4_02162 PF13616 PPIC-type PPIASE domain CB4_02163 PF00005 ABC transporter CB4_02163 PF00027 Cyclic nucleotide-binding domain CB4_02163 PF00664 ABC transporter transmembrane region CB4_02163 PF03412 Peptidase C39 family CB4_02164 PF03050 CB4_02164 CB4_02165 PF00375 Sodium:dicarboxylate symporter family CB4_02166 PF00375 Sodium:dicarboxylate symporter family CB4_02169 PF02621 Menaquinone biosynthesis CB4_02170 PF01048 Phosphorylase superfamily CB4_02172 PF00582 Universal stress protein family CB4_02173 PF00871 Acetokinase family CB4_02173 PF06130 CB4_02173 CB4_02175 PF00694 Aconitase C-terminal domain CB4_02176 PF00330 Aconitase family (aconitate hydratase) CB4_02177 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_02177 PF03466 LysR substrate binding domain CB4_02179 PF00892 EamA-like transporter family CB4_02181 PF04014 Antidote-toxin recognition MazE CB4_02184 PF07098 CB4_02184 CB4_02186 PF01590 GAF domain CB4_02186 PF01966 HD domain CB4_02187 PF04851 Type III restriction enzyme, res subunit CB4_02187 PF13307 Helicase C-terminal domain CB4_02188 PF02635 DsrE/DsrF-like family CB4_02190 PF02540 NAD synthase CB4_02192 PF04014 Antidote-toxin recognition MazE CB4_02194 PF16859 CB4_02194 CB4_02196 PF03992 Antibiotic biosynthesis monooxygenase CB4_02197 PF05573 NosL CB4_02198 PF01370 NAD dependent epimerase/dehydratase family CB4_02198 PF08338 Domain of unknown function (DUF1731) CB4_02199 PF00248 Aldo/keto reductase family CB4_02200 PF13452 N-terminal half of MaoC dehydratase CB4_02201 PF01575 MaoC like domain CB4_02202 PF00395 S-layer homology domain CB4_02202 PF00704 Glycosyl hydrolases family 18 CB4_02204 PF00578 AhpC/TSA family CB4_02205 PF00892 EamA-like transporter family CB4_02206 PF07690 Major Facilitator Superfamily CB4_02207 PF01206 Sulfurtransferase TusA CB4_02208 PF04143 CB4_02208 CB4_02209 PF05675 CB4_02209 CB4_02210 PF00583 Acetyltransferase (GNAT) family CB4_02211 PF03824 CB4_02211 CB4_02212 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02212 PF00672 HAMP domain CB4_02212 PF02743 Cache domain CB4_02213 PF01235 CB4_02213 CB4_02214 PF04960 Glutaminase CB4_02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02216 PF00072 Response regulator receiver domain CB4_02216 PF08664 CB4_02216 CB4_02217 PF01022 Bacterial regulatory protein, arsR family CB4_02218 PF02040 CB4_02218 CB4_02219 PF01451 Low molecular weight phosphotyrosine protein phosphatase CB4_02220 PF11066 CB4_02220 CB4_02221 PF01243 Pyridoxamine 5'-phosphate oxidase CB4_02222 PF01522 Polysaccharide deacetylase CB4_02224 PF13649 Methyltransferase domain CB4_02225 PF04172 CB4_02225 CB4_02226 PF03788 CB4_02226 CB4_02227 PF00565 Staphylococcal nuclease homologue CB4_02228 PF12870 Lumazine-binding domain CB4_02231 PF04012 CB4_02231 CB4_02232 PF09922 Cell wall-active antibiotics response protein (DUF2154) CB4_02233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02233 PF07730 Histidine kinase CB4_02234 PF00072 Response regulator receiver domain CB4_02234 PF00196 Bacterial regulatory proteins, luxR family CB4_02235 PF00512 His Kinase A (phospho-acceptor) domain CB4_02235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02235 PF08447 PAS fold CB4_02239 PF03551 Transcriptional regulator PadR-like family CB4_02239 PF10400 Virulence activator alpha C-term CB4_02241 PF00155 Aminotransferase class I and II CB4_02241 PF00392 Bacterial regulatory proteins, gntR family CB4_02242 PF00465 Iron-containing alcohol dehydrogenase CB4_02244 PF00291 Pyridoxal-phosphate dependent enzyme CB4_02245 PF06081 CB4_02245 CB4_02245 PF11728 DUF939 C-terminal domain CB4_02247 PF00581 Rhodanese-like domain CB4_02247 PF00753 Metallo-beta-lactamase superfamily CB4_02248 PF13686 DsrE/DsrF/DrsH-like family CB4_02249 PF01206 Sulfurtransferase TusA CB4_02250 PF00437 Type II/IV secretion system protein CB4_02250 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CB4_02251 PF11104 Type IV pilus assembly protein PilM; CB4_02254 PF00482 Type II secretion system (T2SS), protein F CB4_02255 PF08334 Type II secretion system (T2SS), protein G CB4_02257 PF07581 CB4_02257 CB4_02258 PF07581 CB4_02258 CB4_02259 PF02719 Polysaccharide biosynthesis protein CB4_02259 PF13727 CoA-binding domain CB4_02260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CB4_02261 PF13692 Glycosyl transferases group 1 CB4_02262 PF02698 DUF218 domain CB4_02263 PF02397 CB4_02263 CB4_02264 PF02706 Chain length determinant protein CB4_02264 PF13614 AAA domain CB4_02265 PF01943 CB4_02265 CB4_02266 PF00534 Glycosyl transferases group 1 CB4_02266 PF13439 Glycosyltransferase Family 4 CB4_02267 PF04932 CB4_02267 CB4_02268 PF00534 Glycosyl transferases group 1 CB4_02268 PF13439 Glycosyltransferase Family 4 CB4_02269 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_02270 PF01370 NAD dependent epimerase/dehydratase family CB4_02271 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CB4_02271 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CB4_02271 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CB4_02272 PF00534 Glycosyl transferases group 1 CB4_02272 PF13477 Glycosyl transferase 4-like CB4_02273 PF01131 DNA topoisomerase CB4_02273 PF01751 Toprim domain CB4_02273 PF13342 CB4_02273 CB4_02274 PF01593 Flavin containing amine oxidoreductase CB4_02274 PF13450 NAD(P)-binding Rossmann-like domain CB4_02275 PF00563 EAL domain CB4_02275 PF00990 GGDEF domain CB4_02276 PF03413 Peptidase propeptide and YPEB domain CB4_02276 PF03929 CB4_02276 CB4_02277 PF00005 ABC transporter CB4_02277 PF12848 ABC transporter CB4_02280 PF13456 Reverse transcriptase-like CB4_02281 PF00696 Amino acid kinase family CB4_02284 PF11251 CB4_02284 CB4_02285 PF16285 CB4_02285 CB4_02286 PF13037 CB4_02286 CB4_02286 PF13039 CB4_02286 CB4_02287 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CB4_02287 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CB4_02288 PF13730 CB4_02288 CB4_02291 PF09848 Uncharacterized conserved protein (DUF2075) CB4_02292 PF01507 Phosphoadenosine phosphosulfate reductase family CB4_02293 PF02086 D12 class N6 adenine-specific DNA methyltransferase CB4_02294 PF00176 SNF2 family N-terminal domain CB4_02294 PF00271 Helicase conserved C-terminal domain CB4_02295 PF00145 C-5 cytosine-specific DNA methylase CB4_02296 PF00145 C-5 cytosine-specific DNA methylase CB4_02298 PF13936 Helix-turn-helix domain CB4_02301 PF04002 RadC-like JAB domain CB4_02308 PF00575 S1 RNA binding domain CB4_02313 PF13814 CB4_02313 CB4_02314 PF01580 FtsK/SpoIIIE family CB4_02326 PF03864 Phage major capsid protein E CB4_02334 PF10145 CB4_02334 CB4_02337 PF00395 S-layer homology domain CB4_02339 PF01510 N-acetylmuramoyl-L-alanine amidase CB4_02339 PF01551 Peptidase family M23 CB4_02356 PF04480 Protein of unknown function (DUF559) CB4_02358 PF00589 Phage integrase family CB4_02358 PF02899 Phage integrase, N-terminal SAM-like domain CB4_02362 PF06866 CB4_02362 CB4_02365 PF13476 AAA domain CB4_02367 PF06378 CB4_02367 CB4_02368 PF00436 Single-strand binding protein family CB4_02369 PF08858 IDEAL domain CB4_02371 PF07261 Replication initiation and membrane attachment CB4_02372 PF11417 Loader and inhibitor of phage G40P CB4_02373 PF00772 DnaB-like helicase N terminal domain CB4_02373 PF03796 DnaB-like helicase C terminal domain CB4_02377 PF12961 Domain of Unknown Function with PDB structure (DUF3850) CB4_02379 PF10782 CB4_02379 CB4_02380 PF03838 Recombination protein U CB4_02385 PF00754 F5/8 type C domain CB4_02386 PF00583 Acetyltransferase (GNAT) family CB4_02387 PF13676 TIR domain CB4_02390 PF13443 Cro/C1-type HTH DNA-binding domain CB4_02391 PF13443 Cro/C1-type HTH DNA-binding domain CB4_02392 PF00196 Bacterial regulatory proteins, luxR family CB4_02392 PF04542 Sigma-70 region 2 CB4_02393 PF04542 Sigma-70 region 2 CB4_02393 PF04545 Sigma-70, region 4 CB4_02399 PF10137 CB4_02399 CB4_02406 PF04232 Stage V sporulation protein S (SpoVS) CB4_02407 PF04542 Sigma-70 region 2 CB4_02407 PF04545 Sigma-70, region 4 CB4_02409 PF04542 Sigma-70 region 2 CB4_02411 PF07833 Copper amine oxidase N-terminal domain CB4_02411 PF13539 D-alanyl-D-alanine carboxypeptidase CB4_02413 PF09388 Spo0E like sporulation regulatory protein CB4_02415 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_02417 PF00145 C-5 cytosine-specific DNA methylase CB4_02418 PF17209 CB4_02418 CB4_02419 PF08858 IDEAL domain CB4_02420 PF03374 CB4_02420 CB4_02420 PF09669 CB4_02420 CB4_02422 PF00239 Resolvase, N terminal domain CB4_02422 PF07508 Recombinase CB4_02422 PF13408 Recombinase zinc beta ribbon domain CB4_02425 PF10750 CB4_02425 CB4_02427 PF10850 CB4_02427 CB4_02428 PF07690 Major Facilitator Superfamily CB4_02429 PF09587 Bacterial capsule synthesis protein PGA_cap CB4_02430 PF16147 CB4_02430 CB4_02432 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02432 PF13682 Chemoreceptor zinc-binding domain CB4_02433 PF00324 Amino acid permease CB4_02434 PF00324 Amino acid permease CB4_02435 PF00324 Amino acid permease CB4_02440 PF02830 V4R domain CB4_02440 PF06505 CB4_02440 CB4_02440 PF13556 PucR C-terminal helix-turn-helix domain CB4_02441 PF02332 Methane/Phenol/Toluene Hydroxylase CB4_02442 PF02406 MmoB/DmpM family CB4_02443 PF02332 Methane/Phenol/Toluene Hydroxylase CB4_02443 PF04945 YHS domain CB4_02445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CB4_02446 PF00111 2Fe-2S iron-sulfur cluster binding domain CB4_02447 PF03928 Domain of unknown function (DUF336) CB4_02448 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CB4_02449 PF00111 2Fe-2S iron-sulfur cluster binding domain CB4_02450 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_02451 PF01118 Semialdehyde dehydrogenase, NAD binding domain CB4_02451 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CB4_02452 PF00682 HMGL-like CB4_02452 PF07836 DmpG-like communication domain CB4_02453 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_02454 PF01361 Tautomerase enzyme CB4_02455 PF00171 Aldehyde dehydrogenase family CB4_02456 PF05504 Spore germination B3/ GerAC like, C-terminal CB4_02457 PF03845 CB4_02457 CB4_02458 PF03323 CB4_02458 CB4_02459 PF03486 HI0933-like protein CB4_02459 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_02460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CB4_02463 PF00581 Rhodanese-like domain CB4_02464 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_02464 PF03466 LysR substrate binding domain CB4_02465 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CB4_02465 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CB4_02466 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_02467 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_02468 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CB4_02469 PF03458 CB4_02469 CB4_02471 PF00929 Exonuclease CB4_02472 PF00877 NlpC/P60 family CB4_02472 PF01476 LysM domain CB4_02473 PF02585 GlcNAc-PI de-N-acetylase CB4_02474 PF00534 Glycosyl transferases group 1 CB4_02474 PF13439 Glycosyltransferase Family 4 CB4_02475 PF02655 ATP-grasp domain CB4_02476 PF01636 Phosphotransferase enzyme family CB4_02477 PF00069 Protein kinase domain CB4_02478 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02478 PF00672 HAMP domain CB4_02478 PF02743 Cache domain CB4_02479 PF00501 AMP-binding enzyme CB4_02479 PF13193 AMP-binding enzyme C-terminal domain CB4_02479 PF16177 CB4_02479 CB4_02480 PF00893 Small Multidrug Resistance protein CB4_02481 PF00893 Small Multidrug Resistance protein CB4_02483 PF07690 Major Facilitator Superfamily CB4_02484 PF01425 Amidase CB4_02485 PF00313 'Cold-shock' DNA-binding domain CB4_02486 PF00270 DEAD/DEAH box helicase CB4_02486 PF00271 Helicase conserved C-terminal domain CB4_02487 PF02559 CarD-like/TRCF domain CB4_02489 PF01569 PAP2 superfamily CB4_02490 PF00912 Transglycosylase CB4_02491 PF09335 CB4_02491 CB4_02492 PF00005 ABC transporter CB4_02493 PF12679 CB4_02493 CB4_02494 PF03988 CB4_02494 CB4_02495 PF00929 Exonuclease CB4_02496 PF05728 Uncharacterised protein family (UPF0227) CB4_02497 PF02696 CB4_02497 CB4_02498 PF11185 CB4_02498 CB4_02499 PF06445 GyrI-like small molecule binding domain CB4_02499 PF13411 MerR HTH family regulatory protein CB4_02500 PF07690 Major Facilitator Superfamily CB4_02501 PF03323 CB4_02501 CB4_02502 PF03845 CB4_02502 CB4_02503 PF05504 Spore germination B3/ GerAC like, C-terminal CB4_02504 PF01063 Aminotransferase class IV CB4_02505 PF06207 CB4_02505 CB4_02506 PF00742 Homoserine dehydrogenase CB4_02506 PF03447 Homoserine dehydrogenase, NAD binding domain CB4_02508 PF02675 S-adenosylmethionine decarboxylase CB4_02509 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CB4_02509 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CB4_02512 PF04551 GcpE protein CB4_02513 PF00375 Sodium:dicarboxylate symporter family CB4_02514 PF02080 TrkA-C domain CB4_02515 PF03793 PASTA domain CB4_02516 PF00395 S-layer homology domain CB4_02517 PF00583 Acetyltransferase (GNAT) family CB4_02519 PF02515 CoA-transferase family III CB4_02520 PF11155 Domain of unknown function (DUF2935) CB4_02521 PF00085 Thioredoxin CB4_02522 PF01541 GIY-YIG catalytic domain CB4_02522 PF02151 UvrB/uvrC motif CB4_02523 PF00994 Probable molybdopterin binding domain CB4_02525 PF01385 CB4_02525 CB4_02525 PF07282 CB4_02525 CB4_02525 PF12323 CB4_02525 CB4_02527 PF13027 CB4_02527 CB4_02528 PF03551 Transcriptional regulator PadR-like family CB4_02529 PF01098 CB4_02529 CB4_02530 PF00072 Response regulator receiver domain CB4_02530 PF00486 Transcriptional regulatory protein, C terminal CB4_02531 PF00512 His Kinase A (phospho-acceptor) domain CB4_02531 PF00672 HAMP domain CB4_02531 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02532 PF00394 Multicopper oxidase CB4_02532 PF07731 Multicopper oxidase CB4_02532 PF07732 Multicopper oxidase CB4_02533 PF00005 ABC transporter CB4_02534 PF02687 CB4_02534 CB4_02535 PF00512 His Kinase A (phospho-acceptor) domain CB4_02535 PF00672 HAMP domain CB4_02535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02536 PF00072 Response regulator receiver domain CB4_02536 PF00486 Transcriptional regulatory protein, C terminal CB4_02537 PF01385 CB4_02537 CB4_02537 PF12323 CB4_02537 CB4_02538 PF00768 D-alanyl-D-alanine carboxypeptidase CB4_02539 PF00625 Guanylate kinase CB4_02540 PF00589 Phage integrase family CB4_02540 PF02899 Phage integrase, N-terminal SAM-like domain CB4_02541 PF00195 Chalcone and stilbene synthases, N-terminal domain CB4_02541 PF02797 Chalcone and stilbene synthases, C-terminal domain CB4_02542 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CB4_02543 PF00155 Aminotransferase class I and II CB4_02544 PF12804 MobA-like NTP transferase domain CB4_02545 PF00994 Probable molybdopterin binding domain CB4_02545 PF03453 MoeA N-terminal region (domain I and II) CB4_02545 PF03454 MoeA C-terminal region (domain IV) CB4_02546 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CB4_02547 PF02391 MoaE protein CB4_02548 PF02597 ThiS family CB4_02549 PF00989 PAS fold CB4_02549 PF00990 GGDEF domain CB4_02549 PF07694 5TMR of 5TMR-LYT CB4_02551 PF00005 ABC transporter CB4_02551 PF00027 Cyclic nucleotide-binding domain CB4_02551 PF00664 ABC transporter transmembrane region CB4_02554 PF01370 NAD dependent epimerase/dehydratase family CB4_02555 PF04542 Sigma-70 region 2 CB4_02555 PF08281 Sigma-70, region 4 CB4_02556 PF12823 CB4_02556 CB4_02557 PF12840 Helix-turn-helix domain CB4_02558 PF08327 Activator of Hsp90 ATPase homolog 1-like protein CB4_02559 PF00873 AcrB/AcrD/AcrF family CB4_02561 PF09932 CB4_02561 CB4_02562 PF00210 Ferritin-like domain CB4_02563 PF03323 CB4_02563 CB4_02564 PF03845 CB4_02564 CB4_02565 PF05504 Spore germination B3/ GerAC like, C-terminal CB4_02566 PF00753 Metallo-beta-lactamase superfamily CB4_02567 PF00392 Bacterial regulatory proteins, gntR family CB4_02567 PF07729 FCD domain CB4_02568 PF13536 Multidrug resistance efflux transporter CB4_02569 PF01022 Bacterial regulatory protein, arsR family CB4_02570 PF00122 E1-E2 ATPase CB4_02570 PF00403 Heavy-metal-associated domain CB4_02570 PF00702 haloacid dehalogenase-like hydrolase CB4_02571 PF02535 CB4_02571 CB4_02571 PF07731 Multicopper oxidase CB4_02571 PF07732 Multicopper oxidase CB4_02572 PF03239 CB4_02572 CB4_02574 PF00512 His Kinase A (phospho-acceptor) domain CB4_02574 PF00989 PAS fold CB4_02574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02574 PF08447 PAS fold CB4_02574 PF08448 PAS fold CB4_02574 PF10114 CB4_02574 CB4_02576 PF00005 ABC transporter CB4_02576 PF12848 ABC transporter CB4_02576 PF16326 CB4_02576 CB4_02577 PF07878 CB4_02577 CB4_02578 PF01385 CB4_02578 CB4_02578 PF07282 CB4_02578 CB4_02578 PF12323 CB4_02578 CB4_02579 PF16113 CB4_02579 CB4_02580 PF08279 HTH domain CB4_02580 PF13280 CB4_02580 CB4_02581 PF08327 Activator of Hsp90 ATPase homolog 1-like protein CB4_02582 PF03601 CB4_02582 CB4_02583 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_02583 PF03466 LysR substrate binding domain CB4_02585 PF02588 CB4_02585 CB4_02586 PF13649 Methyltransferase domain CB4_02587 PF13563 2'-5' RNA ligase superfamily CB4_02588 PF01545 Cation efflux family CB4_02588 PF16916 CB4_02588 CB4_02589 PF00248 Aldo/keto reductase family CB4_02590 PF07690 Major Facilitator Superfamily CB4_02591 PF01230 HIT domain CB4_02592 PF00271 Helicase conserved C-terminal domain CB4_02592 PF04851 Type III restriction enzyme, res subunit CB4_02592 PF13091 PLD-like domain CB4_02593 PF01545 Cation efflux family CB4_02594 PF01022 Bacterial regulatory protein, arsR family CB4_02596 PF00916 CB4_02596 CB4_02596 PF01740 STAS domain CB4_02597 PF13411 MerR HTH family regulatory protein CB4_02598 PF08327 Activator of Hsp90 ATPase homolog 1-like protein CB4_02599 PF01381 Helix-turn-helix CB4_02599 PF07883 Cupin domain CB4_02600 PF00892 EamA-like transporter family CB4_02601 PF01022 Bacterial regulatory protein, arsR family CB4_02602 PF07690 Major Facilitator Superfamily CB4_02603 PF03313 CB4_02603 CB4_02604 PF01385 CB4_02604 CB4_02604 PF07282 CB4_02604 CB4_02605 PF03313 CB4_02605 CB4_02606 PF03315 Serine dehydratase beta chain CB4_02607 PF00303 Thymidylate synthase CB4_02608 PF00186 Dihydrofolate reductase CB4_02609 PF00106 short chain dehydrogenase CB4_02610 PF13411 MerR HTH family regulatory protein CB4_02611 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02611 PF00672 HAMP domain CB4_02611 PF02743 Cache domain CB4_02612 PF01522 Polysaccharide deacetylase CB4_02613 PF00583 Acetyltransferase (GNAT) family CB4_02614 PF01047 MarR family CB4_02615 PF02525 Flavodoxin-like fold CB4_02617 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02618 PF00005 ABC transporter CB4_02618 PF09821 CB4_02618 CB4_02619 PF00583 Acetyltransferase (GNAT) family CB4_02620 PF13533 Biotin-lipoyl like CB4_02620 PF16576 CB4_02620 CB4_02621 PF00873 AcrB/AcrD/AcrF family CB4_02622 PF09335 CB4_02622 CB4_02623 PF00589 Phage integrase family CB4_02624 PF07833 Copper amine oxidase N-terminal domain CB4_02624 PF14285 CB4_02624 CB4_02626 PF00395 S-layer homology domain CB4_02627 PF00892 EamA-like transporter family CB4_02628 PF01381 Helix-turn-helix CB4_02628 PF07883 Cupin domain CB4_02629 PF03591 CB4_02629 CB4_02630 PF05437 CB4_02630 CB4_02631 PF07486 Cell Wall Hydrolase CB4_02631 PF07833 Copper amine oxidase N-terminal domain CB4_02633 PF01047 MarR family CB4_02634 PF16576 CB4_02634 CB4_02635 PF16576 CB4_02635 CB4_02636 PF07690 Major Facilitator Superfamily CB4_02637 PF12706 Beta-lactamase superfamily domain CB4_02638 PF12840 Helix-turn-helix domain CB4_02639 PF00581 Rhodanese-like domain CB4_02639 PF01206 Sulfurtransferase TusA CB4_02639 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CB4_02639 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_02639 PF13686 DsrE/DsrF/DrsH-like family CB4_02640 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_02641 PF02639 CB4_02641 CB4_02642 PF04851 Type III restriction enzyme, res subunit CB4_02644 PF00856 SET domain CB4_02645 PF00293 NUDIX domain CB4_02646 PF07751 CB4_02646 CB4_02648 PF10057 CB4_02648 CB4_02649 PF06146 CB4_02649 CB4_02650 PF07849 CB4_02650 CB4_02651 PF00037 4Fe-4S binding domain CB4_02651 PF00384 Molybdopterin oxidoreductase CB4_02651 PF01568 Molydopterin dinucleotide binding domain CB4_02651 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CB4_02651 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CB4_02651 PF13510 2Fe-2S iron-sulfur cluster binding domain CB4_02652 PF02673 CB4_02652 CB4_02653 PF00005 ABC transporter CB4_02654 PF07690 Major Facilitator Superfamily CB4_02655 PF00005 ABC transporter CB4_02656 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02657 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02658 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CB4_02659 PF03239 CB4_02659 CB4_02660 PF02661 Fic/DOC family CB4_02661 PF04235 CB4_02661 CB4_02662 PF00440 Bacterial regulatory proteins, tetR family CB4_02663 PF00395 S-layer homology domain CB4_02664 PF01979 Amidohydrolase family CB4_02664 PF13382 Adenine deaminase C-terminal domain CB4_02665 PF00005 ABC transporter CB4_02665 PF12848 ABC transporter CB4_02666 PF08241 Methyltransferase domain CB4_02669 PF00205 Thiamine pyrophosphate enzyme, central domain CB4_02669 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CB4_02669 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CB4_02670 PF00171 Aldehyde dehydrogenase family CB4_02671 PF01645 Conserved region in glutamate synthase CB4_02672 PF00296 Luciferase-like monooxygenase CB4_02674 PF00122 E1-E2 ATPase CB4_02674 PF00403 Heavy-metal-associated domain CB4_02674 PF00702 haloacid dehalogenase-like hydrolase CB4_02675 PF01022 Bacterial regulatory protein, arsR family CB4_02676 PF08241 Methyltransferase domain CB4_02678 PF03551 Transcriptional regulator PadR-like family CB4_02679 PF11193 CB4_02679 CB4_02680 PF08970 Sporulation inhibitor A CB4_02683 PF00672 HAMP domain CB4_02683 PF14827 Sensory domain of two-component sensor kinase CB4_02684 PF11155 Domain of unknown function (DUF2935) CB4_02685 PF00005 ABC transporter CB4_02685 PF00664 ABC transporter transmembrane region CB4_02686 PF00005 ABC transporter CB4_02686 PF00664 ABC transporter transmembrane region CB4_02687 PF13463 Winged helix DNA-binding domain CB4_02688 PF04012 CB4_02688 CB4_02690 PF00512 His Kinase A (phospho-acceptor) domain CB4_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02691 PF00072 Response regulator receiver domain CB4_02691 PF00486 Transcriptional regulatory protein, C terminal CB4_02692 PF01648 4'-phosphopantetheinyl transferase superfamily CB4_02693 PF00132 Bacterial transferase hexapeptide (six repeats) CB4_02693 PF00501 AMP-binding enzyme CB4_02693 PF00550 Phosphopantetheine attachment site CB4_02693 PF13193 AMP-binding enzyme C-terminal domain CB4_02694 PF13243 Prenyltransferase-like CB4_02694 PF13249 Prenyltransferase-like CB4_02695 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_02698 PF09639 YjcQ protein CB4_02703 PF02498 CB4_02703 CB4_02703 PF03374 CB4_02703 CB4_02705 PF12728 Helix-turn-helix domain CB4_02706 PF00589 Phage integrase family CB4_02707 PF00589 Phage integrase family CB4_02713 PF07978 NIPSNAP CB4_02714 PF03358 NADPH-dependent FMN reductase CB4_02720 PF10842 CB4_02720 CB4_02723 PF12323 CB4_02723 CB4_02726 PF13641 Glycosyltransferase like family 2 CB4_02728 PF00067 Cytochrome P450 CB4_02729 PF00155 Aminotransferase class I and II CB4_02730 PF03744 CB4_02730 CB4_02731 PF01790 CB4_02731 CB4_02732 PF13419 Haloacid dehalogenase-like hydrolase CB4_02733 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_02734 PF00512 His Kinase A (phospho-acceptor) domain CB4_02734 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02735 PF00072 Response regulator receiver domain CB4_02735 PF00486 Transcriptional regulatory protein, C terminal CB4_02736 PF00072 Response regulator receiver domain CB4_02736 PF00486 Transcriptional regulatory protein, C terminal CB4_02737 PF00512 His Kinase A (phospho-acceptor) domain CB4_02737 PF00672 HAMP domain CB4_02737 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02738 PF12730 CB4_02738 CB4_02739 PF00005 ABC transporter CB4_02741 PF04932 CB4_02741 CB4_02742 PF00877 NlpC/P60 family CB4_02743 PF01841 Transglutaminase-like superfamily CB4_02744 PF00893 Small Multidrug Resistance protein CB4_02745 PF00893 Small Multidrug Resistance protein CB4_02746 PF00440 Bacterial regulatory proteins, tetR family CB4_02747 PF00326 Prolyl oligopeptidase family CB4_02748 PF01569 PAP2 superfamily CB4_02748 PF09335 CB4_02748 CB4_02749 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02749 PF00672 HAMP domain CB4_02749 PF02743 Cache domain CB4_02752 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02753 PF02602 Uroporphyrinogen-III synthase HemD CB4_02755 PF03641 Possible lysine decarboxylase CB4_02756 PF03819 MazG nucleotide pyrophosphohydrolase domain CB4_02757 PF11213 Protein of unknown function (DUF3006) CB4_02758 PF00753 Metallo-beta-lactamase superfamily CB4_02759 PF01235 CB4_02759 CB4_02760 PF00999 Sodium/hydrogen exchanger family CB4_02762 PF08327 Activator of Hsp90 ATPase homolog 1-like protein CB4_02763 PF12840 Helix-turn-helix domain CB4_02764 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CB4_02771 PF01381 Helix-turn-helix CB4_02772 PF09946 CB4_02772 CB4_02775 PF00005 ABC transporter CB4_02775 PF08402 TOBE domain CB4_02776 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02777 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02778 PF13416 Bacterial extracellular solute-binding protein CB4_02779 PF00004 ATPase family associated with various cellular activities (AAA) CB4_02779 PF02151 UvrB/uvrC motif CB4_02779 PF07724 AAA domain (Cdc48 subfamily) CB4_02779 PF10431 C-terminal, D2-small domain, of ClpB protein CB4_02780 PF06779 CB4_02780 CB4_02781 PF00133 tRNA synthetases class I (I, L, M and V) CB4_02781 PF08264 Anticodon-binding domain of tRNA CB4_02782 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_02783 PF00512 His Kinase A (phospho-acceptor) domain CB4_02783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02784 PF00072 Response regulator receiver domain CB4_02784 PF00486 Transcriptional regulatory protein, C terminal CB4_02786 PF04234 CopC domain CB4_02787 PF02537 CB4_02787 CB4_02788 PF02537 CB4_02788 CB4_02791 PF13641 Glycosyltransferase like family 2 CB4_02792 PF10096 CB4_02792 CB4_02792 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella CB4_02793 PF12705 PD-(D/E)XK nuclease superfamily CB4_02794 PF03745 Domain of unknown function (DUF309) CB4_02795 PF13025 CB4_02795 CB4_02796 PF06725 3D domain CB4_02797 PF13476 AAA domain CB4_02797 PF13558 Putative exonuclease SbcCD, C subunit CB4_02798 PF00149 Calcineurin-like phosphoesterase CB4_02798 PF12320 Type 5 capsule protein repressor C-terminal domain CB4_02799 PF00580 UvrD/REP helicase N-terminal domain CB4_02799 PF12705 PD-(D/E)XK nuclease superfamily CB4_02799 PF13361 UvrD-like helicase C-terminal domain CB4_02800 PF04257 Exodeoxyribonuclease V, gamma subunit CB4_02800 PF12705 PD-(D/E)XK nuclease superfamily CB4_02802 PF00881 Nitroreductase family CB4_02803 PF14152 CB4_02803 CB4_02804 PF01131 DNA topoisomerase CB4_02804 PF01751 Toprim domain CB4_02805 PF00494 Squalene/phytoene synthase CB4_02806 PF00072 Response regulator receiver domain CB4_02806 PF00486 Transcriptional regulatory protein, C terminal CB4_02806 PF03704 Bacterial transcriptional activator domain CB4_02807 PF00072 Response regulator receiver domain CB4_02807 PF00512 His Kinase A (phospho-acceptor) domain CB4_02807 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02807 PF06580 CB4_02807 CB4_02807 PF07695 CB4_02807 CB4_02808 PF01497 Periplasmic binding protein CB4_02809 PF00005 ABC transporter CB4_02809 PF12848 ABC transporter CB4_02812 PF01895 PhoU domain CB4_02813 PF00929 Exonuclease CB4_02814 PF07681 CB4_02814 CB4_02815 PF00384 Molybdopterin oxidoreductase CB4_02815 PF01568 Molydopterin dinucleotide binding domain CB4_02815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CB4_02816 PF04234 CopC domain CB4_02817 PF05425 CB4_02817 CB4_02818 PF02811 PHP domain CB4_02820 PF13520 Amino acid permease CB4_02822 PF00391 PEP-utilising enzyme, mobile domain CB4_02822 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CB4_02823 PF00561 alpha/beta hydrolase fold CB4_02825 PF00206 Lyase CB4_02825 PF10415 Fumarase C C-terminus CB4_02826 PF00501 AMP-binding enzyme CB4_02826 PF13193 AMP-binding enzyme C-terminal domain CB4_02827 PF00266 Aminotransferase class-V CB4_02828 PF01261 Xylose isomerase-like TIM barrel CB4_02831 PF02588 CB4_02831 CB4_02831 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_02832 PF00877 NlpC/P60 family CB4_02832 PF01476 LysM domain CB4_02833 PF01136 CB4_02833 CB4_02833 PF12392 CB4_02833 CB4_02834 PF00239 Resolvase, N terminal domain CB4_02835 PF05979 Bacterial protein of unknown function (DUF896) CB4_02836 PF01476 LysM domain CB4_02837 PF00717 Peptidase S24-like CB4_02837 PF01726 LexA DNA binding domain CB4_02838 PF04306 CB4_02838 CB4_02839 PF01385 CB4_02839 CB4_02839 PF07282 CB4_02839 CB4_02839 PF12323 CB4_02839 CB4_02840 PF12146 Putative lysophospholipase CB4_02841 PF03458 CB4_02841 CB4_02842 PF00375 Sodium:dicarboxylate symporter family CB4_02843 PF00464 Serine hydroxymethyltransferase CB4_02844 PF00155 Aminotransferase class I and II CB4_02844 PF00392 Bacterial regulatory proteins, gntR family CB4_02845 PF00202 Aminotransferase class-III CB4_02846 PF01168 Alanine racemase, N-terminal domain CB4_02847 PF12900 Pyridoxamine 5'-phosphate oxidase CB4_02848 PF01609 Transposase DDE domain CB4_02849 PF08238 Sel1 repeat CB4_02850 PF00120 Glutamine synthetase, catalytic domain CB4_02850 PF03951 Glutamine synthetase, beta-Grasp domain CB4_02851 PF13411 MerR HTH family regulatory protein CB4_02852 PF06838 Methionine gamma-lyase CB4_02853 PF01926 50S ribosome-binding GTPase CB4_02853 PF13167 CB4_02853 CB4_02853 PF16360 CB4_02853 CB4_02855 PF04402 Protein of unknown function (DUF541) CB4_02857 PF00072 Response regulator receiver domain CB4_02857 PF01584 CheW-like domain CB4_02858 PF00004 ATPase family associated with various cellular activities (AAA) CB4_02859 PF00188 Cysteine-rich secretory protein family CB4_02861 PF16576 CB4_02861 CB4_02862 PF00873 AcrB/AcrD/AcrF family CB4_02866 PF01541 GIY-YIG catalytic domain CB4_02867 PF09860 CB4_02867 CB4_02869 PF17428 CB4_02869 CB4_02870 PF09855 CB4_02870 CB4_02871 PF03988 CB4_02871 CB4_02872 PF09685 CB4_02872 CB4_02874 PF00155 Aminotransferase class I and II CB4_02875 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02876 PF00005 ABC transporter CB4_02876 PF09383 NIL domain CB4_02877 PF01522 Polysaccharide deacetylase CB4_02878 PF17209 CB4_02878 CB4_02879 PF01715 IPP transferase CB4_02880 PF04445 Putative SAM-dependent methyltransferase CB4_02881 PF10776 CB4_02881 CB4_02882 PF07875 CB4_02882 CB4_02885 PF06146 CB4_02885 CB4_02886 PF00294 pfkB family carbohydrate kinase CB4_02887 PF04307 CB4_02887 CB4_02888 PF01522 Polysaccharide deacetylase CB4_02890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02890 PF00672 HAMP domain CB4_02890 PF02743 Cache domain CB4_02892 PF02588 CB4_02892 CB4_02892 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_02894 PF02600 Disulfide bond formation protein DsbB CB4_02895 PF13462 Thioredoxin CB4_02896 PF00563 EAL domain CB4_02896 PF00990 GGDEF domain CB4_02896 PF13185 GAF domain CB4_02896 PF13426 PAS domain CB4_02898 PF02694 CB4_02898 CB4_02899 PF04014 Antidote-toxin recognition MazE CB4_02901 PF02678 Pirin CB4_02902 PF00440 Bacterial regulatory proteins, tetR family CB4_02904 PF02517 CAAX protease self-immunity CB4_02905 PF02659 CB4_02905 CB4_02909 PF00122 E1-E2 ATPase CB4_02909 PF00689 Cation transporting ATPase, C-terminus CB4_02909 PF00690 Cation transporter/ATPase, N-terminus CB4_02909 PF00702 haloacid dehalogenase-like hydrolase CB4_02911 PF02503 Polyphosphate kinase middle domain CB4_02911 PF13089 Polyphosphate kinase N-terminal domain CB4_02911 PF13090 Polyphosphate kinase C-terminal domain CB4_02912 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02912 PF00672 HAMP domain CB4_02913 PF14526 Integron-associated effector binding protein CB4_02914 PF12867 DinB superfamily CB4_02915 PF08279 HTH domain CB4_02915 PF13280 CB4_02915 CB4_02916 PF00497 Bacterial extracellular solute-binding proteins, family 3 CB4_02917 PF00528 Binding-protein-dependent transport system inner membrane component CB4_02918 PF00005 ABC transporter CB4_02919 PF01648 4'-phosphopantetheinyl transferase superfamily CB4_02920 PF00501 AMP-binding enzyme CB4_02920 PF00550 Phosphopantetheine attachment site CB4_02920 PF00668 Condensation domain CB4_02920 PF07993 Male sterility protein CB4_02920 PF13193 AMP-binding enzyme C-terminal domain CB4_02921 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02921 PF00672 HAMP domain CB4_02923 PF02040 CB4_02923 CB4_02924 PF02683 CB4_02924 CB4_02925 PF08534 Redoxin CB4_02926 PF02687 CB4_02926 CB4_02927 PF00005 ABC transporter CB4_02928 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02930 PF00072 Response regulator receiver domain CB4_02930 PF00486 Transcriptional regulatory protein, C terminal CB4_02933 PF06983 3-demethylubiquinone-9 3-methyltransferase CB4_02934 PF09388 Spo0E like sporulation regulatory protein CB4_02935 PF13076 CB4_02935 CB4_02937 PF01609 Transposase DDE domain CB4_02942 PF06271 CB4_02942 CB4_02943 PF00106 short chain dehydrogenase CB4_02944 PF10842 CB4_02944 CB4_02945 PF13370 4Fe-4S single cluster domain CB4_02949 PF09932 CB4_02949 CB4_02950 PF05163 DinB family CB4_02953 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_02953 PF10370 Domain of unknown function (DUF2437) CB4_02955 PF05368 NmrA-like family CB4_02956 PF12802 MarR family CB4_02957 PF05163 DinB family CB4_02958 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CB4_02958 PF03466 LysR substrate binding domain CB4_02959 PF03807 NADP oxidoreductase coenzyme F420-dependent CB4_02960 PF00817 impB/mucB/samB family CB4_02960 PF11799 impB/mucB/samB family C-terminal domain CB4_02963 PF13518 Helix-turn-helix domain CB4_02964 PF13076 CB4_02964 CB4_02965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02965 PF02743 Cache domain CB4_02967 PF01396 CB4_02967 CB4_02970 PF13302 Acetyltransferase (GNAT) domain CB4_02971 PF08896 CB4_02971 CB4_02972 PF01119 DNA mismatch repair protein, C-terminal domain CB4_02972 PF08676 MutL C terminal dimerisation domain CB4_02972 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02973 PF00488 MutS domain V CB4_02973 PF01624 MutS domain I CB4_02973 PF05188 MutS domain II CB4_02973 PF05190 MutS family domain IV CB4_02973 PF05192 MutS domain III CB4_02974 PF14395 CB4_02974 CB4_02975 PF10628 CB4_02975 CB4_02976 PF00171 Aldehyde dehydrogenase family CB4_02978 PF01385 CB4_02978 CB4_02978 PF07282 CB4_02978 CB4_02978 PF12323 CB4_02978 CB4_02979 PF00239 Resolvase, N terminal domain CB4_02979 PF07508 Recombinase CB4_02979 PF13408 Recombinase zinc beta ribbon domain CB4_02980 PF01548 CB4_02980 CB4_02980 PF02371 CB4_02980 CB4_02981 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_02981 PF00672 HAMP domain CB4_02983 PF10628 CB4_02983 CB4_02984 PF06133 Protein of unknown function (DUF964) CB4_02985 PF00919 Uncharacterized protein family UPF0004 CB4_02985 PF01938 TRAM domain CB4_02985 PF04055 Radical SAM superfamily CB4_02986 PF00072 Response regulator receiver domain CB4_02986 PF00512 His Kinase A (phospho-acceptor) domain CB4_02986 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_02986 PF02743 Cache domain CB4_02986 PF08448 PAS fold CB4_02987 PF13690 Chemotaxis phosphatase CheX CB4_02988 PF00072 Response regulator receiver domain CB4_02990 PF06962 Putative rRNA methylase CB4_02991 PF12706 Beta-lactamase superfamily domain CB4_02992 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CB4_02992 PF12367 CB4_02992 CB4_02993 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CB4_02993 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CB4_02993 PF17147 CB4_02993 CB4_02994 PF04232 Stage V sporulation protein S (SpoVS) CB4_02995 PF00013 KH domain CB4_02995 PF01966 HD domain CB4_02995 PF12072 CB4_02995 CB4_02996 PF02631 RecX family CB4_02997 PF00154 recA bacterial DNA recombination protein CB4_02998 PF02632 BioY family CB4_02999 PF13500 AAA domain CB4_03000 PF00202 Aminotransferase class-III CB4_03001 PF00270 DEAD/DEAH box helicase CB4_03001 PF00271 Helicase conserved C-terminal domain CB4_03001 PF03880 DbpA RNA binding domain CB4_03002 PF00994 Probable molybdopterin binding domain CB4_03002 PF02464 Competence-damaged protein CB4_03003 PF01066 CDP-alcohol phosphatidyltransferase CB4_03004 PF00919 Uncharacterized protein family UPF0004 CB4_03004 PF04055 Radical SAM superfamily CB4_03005 PF13413 Helix-turn-helix domain CB4_03005 PF13464 CB4_03005 CB4_03006 PF11868 CB4_03006 CB4_03007 PF11588 Protein of unknown function (DUF3243) CB4_03008 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_03009 PF00675 Insulinase (Peptidase family M16) CB4_03009 PF05193 Peptidase M16 inactive domain CB4_03010 PF05193 Peptidase M16 inactive domain CB4_03014 PF00440 Bacterial regulatory proteins, tetR family CB4_03015 PF16576 CB4_03015 CB4_03016 PF07690 Major Facilitator Superfamily CB4_03017 PF16576 CB4_03017 CB4_03018 PF00581 Rhodanese-like domain CB4_03019 PF00391 PEP-utilising enzyme, mobile domain CB4_03019 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CB4_03019 PF02896 PEP-utilising enzyme, TIM barrel domain CB4_03020 PF02163 Peptidase family M50 CB4_03022 PF07261 Replication initiation and membrane attachment CB4_03023 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03023 PF00672 HAMP domain CB4_03024 PF00155 Aminotransferase class I and II CB4_03025 PF00004 ATPase family associated with various cellular activities (AAA) CB4_03025 PF01434 Peptidase family M41 CB4_03029 PF01979 Amidohydrolase family CB4_03030 PF02629 CoA binding domain CB4_03030 PF06971 Putative DNA-binding protein N-terminus CB4_03031 PF00929 Exonuclease CB4_03031 PF04851 Type III restriction enzyme, res subunit CB4_03031 PF13307 Helicase C-terminal domain CB4_03032 PF13432 Tetratricopeptide repeat CB4_03032 PF14559 Tetratricopeptide repeat CB4_03034 PF02261 Aspartate decarboxylase CB4_03035 PF02569 Pantoate-beta-alanine ligase CB4_03036 PF02548 Ketopantoate hydroxymethyltransferase CB4_03037 PF02237 Biotin protein ligase C terminal domain CB4_03037 PF03099 Biotin/lipoate A/B protein ligase family CB4_03037 PF08279 HTH domain CB4_03038 PF01743 Poly A polymerase head domain CB4_03038 PF12627 Probable RNA and SrmB- binding site of polymerase A CB4_03038 PF13735 tRNA nucleotidyltransferase domain 2 putative CB4_03039 PF00534 Glycosyl transferases group 1 CB4_03039 PF13439 Glycosyltransferase Family 4 CB4_03040 PF02585 GlcNAc-PI de-N-acetylase CB4_03041 PF02142 MGS-like domain CB4_03042 PF01113 Dihydrodipicolinate reductase, N-terminus CB4_03042 PF05173 Dihydrodipicolinate reductase, C-terminus CB4_03043 PF03819 MazG nucleotide pyrophosphohydrolase domain CB4_03044 PF02588 CB4_03044 CB4_03044 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CB4_03046 PF04542 Sigma-70 region 2 CB4_03046 PF08281 Sigma-70, region 4 CB4_03047 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_03049 PF01965 DJ-1/PfpI family CB4_03050 PF09577 CB4_03050 CB4_03051 PF07187 CB4_03051 CB4_03052 PF08858 IDEAL domain CB4_03054 PF13176 Tetratricopeptide repeat CB4_03054 PF13181 Tetratricopeptide repeat CB4_03054 PF13432 Tetratricopeptide repeat CB4_03055 PF13490 Putative zinc-finger CB4_03056 PF04542 Sigma-70 region 2 CB4_03056 PF08281 Sigma-70, region 4 CB4_03058 PF09388 Spo0E like sporulation regulatory protein CB4_03059 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CB4_03060 PF01842 ACT domain CB4_03060 PF02153 Prephenate dehydrogenase CB4_03061 PF00155 Aminotransferase class I and II CB4_03062 PF00290 Tryptophan synthase alpha chain CB4_03063 PF00291 Pyridoxal-phosphate dependent enzyme CB4_03064 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CB4_03065 PF00218 Indole-3-glycerol phosphate synthase CB4_03066 PF00591 Glycosyl transferase family, a/b domain CB4_03066 PF02885 Glycosyl transferase family, helical bundle domain CB4_03067 PF00425 chorismate binding enzyme CB4_03067 PF04715 Anthranilate synthase component I, N terminal region CB4_03068 PF07736 Chorismate mutase type I CB4_03069 PF01761 3-dehydroquinate synthase CB4_03070 PF01264 Chorismate synthase CB4_03071 PF01739 CheR methyltransferase, SAM binding domain CB4_03071 PF03705 CheR methyltransferase, all-alpha domain CB4_03072 PF00334 Nucleoside diphosphate kinase CB4_03073 PF00348 Polyprenyl synthetase CB4_03074 PF02621 Menaquinone biosynthesis CB4_03075 PF02441 Flavoprotein CB4_03076 PF01040 UbiA prenyltransferase family CB4_03077 PF01209 ubiE/COQ5 methyltransferase family CB4_03078 PF07307 CB4_03078 CB4_03079 PF02081 Tryptophan RNA-binding attenuator protein CB4_03081 PF00216 Bacterial DNA-binding protein CB4_03082 PF09547 CB4_03082 CB4_03083 PF00111 2Fe-2S iron-sulfur cluster binding domain CB4_03085 PF14069 CB4_03085 CB4_03086 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CB4_03086 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CB4_03087 PF02660 CB4_03087 CB4_03088 PF01926 50S ribosome-binding GTPase CB4_03088 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CB4_03090 PF14045 CB4_03090 CB4_03092 PF00575 S1 RNA binding domain CB4_03093 PF01553 Acyltransferase CB4_03094 PF02224 Cytidylate kinase CB4_03096 PF03413 Peptidase propeptide and YPEB domain CB4_03096 PF14620 CB4_03096 CB4_03098 PF13367 CB4_03098 CB4_03100 PF00710 Asparaginase CB4_03101 PF13738 Pyridine nucleotide-disulphide oxidoreductase CB4_03102 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CB4_03102 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CB4_03103 PF05389 Negative regulator of genetic competence (MecA) CB4_03104 PF04607 Region found in RelA / SpoT proteins CB4_03105 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CB4_03105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CB4_03105 PF17147 CB4_03105 CB4_03106 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CB4_03106 PF12838 4Fe-4S dicluster domain CB4_03107 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_03108 PF04851 Type III restriction enzyme, res subunit CB4_03108 PF13625 CB4_03108 CB4_03108 PF16203 CB4_03108 CB4_03109 PF01476 LysM domain CB4_03110 PF02517 CAAX protease self-immunity CB4_03111 PF00270 DEAD/DEAH box helicase CB4_03111 PF00271 Helicase conserved C-terminal domain CB4_03112 PF14493 CB4_03112 CB4_03113 PF13370 4Fe-4S single cluster domain CB4_03114 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_03116 PF00413 Matrixin CB4_03119 PF13539 D-alanyl-D-alanine carboxypeptidase CB4_03120 PF10779 CB4_03120 CB4_03126 PF10076 CB4_03126 CB4_03127 PF04865 CB4_03127 CB4_03128 PF10934 CB4_03128 CB4_03129 PF10844 CB4_03129 CB4_03133 PF08890 Phage XkdN-like protein CB4_03134 PF09393 Protein of unknown function (DUF2001) CB4_03135 PF04984 Phage tail sheath protein CB4_03135 PF17482 CB4_03135 CB4_03138 PF04883 CB4_03138 CB4_03139 PF05521 Phage head-tail joining protein CB4_03140 PF05135 Phage gp6-like head-tail connector protein CB4_03142 PF05065 Phage capsid family CB4_03143 PF04586 CB4_03143 CB4_03144 PF04860 Phage portal protein CB4_03145 PF03354 CB4_03145 CB4_03146 PF05119 CB4_03146 CB4_03147 PF01844 HNH endonuclease CB4_03149 PF04232 Stage V sporulation protein S (SpoVS) CB4_03157 PF04542 Sigma-70 region 2 CB4_03158 PF01695 IstB-like ATP binding protein CB4_03159 PF09681 CB4_03159 CB4_03165 PF01381 Helix-turn-helix CB4_03167 PF05729 NACHT domain CB4_03170 PF13158 CB4_03170 CB4_03171 PF07833 Copper amine oxidase N-terminal domain CB4_03172 PF13462 Thioredoxin CB4_03173 PF05901 CB4_03173 CB4_03174 PF00565 Staphylococcal nuclease homologue CB4_03174 PF05901 CB4_03174 CB4_03176 PF08896 CB4_03176 CB4_03177 PF00395 S-layer homology domain CB4_03177 PF01833 IPT/TIG domain CB4_03178 PF06114 Domain of unknown function (DUF955) CB4_03179 PF00589 Phage integrase family CB4_03179 PF14657 CB4_03179 CB4_03179 PF14659 Phage integrase, N-terminal SAM-like domain CB4_03180 PF13302 Acetyltransferase (GNAT) domain CB4_03181 PF03435 Saccharopine dehydrogenase CB4_03182 PF13649 Methyltransferase domain CB4_03183 PF00005 ABC transporter CB4_03184 PF00528 Binding-protein-dependent transport system inner membrane component CB4_03185 PF09084 NMT1/THI5 like CB4_03186 PF00196 Bacterial regulatory proteins, luxR family CB4_03187 PF00512 His Kinase A (phospho-acceptor) domain CB4_03187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03187 PF07694 5TMR of 5TMR-LYT CB4_03189 PF00324 Amino acid permease CB4_03191 PF01740 STAS domain CB4_03192 PF05433 CB4_03192 CB4_03197 PF13443 Cro/C1-type HTH DNA-binding domain CB4_03198 PF11188 CB4_03198 CB4_03200 PF02517 CAAX protease self-immunity CB4_03202 PF12728 Helix-turn-helix domain CB4_03203 PF01596 O-methyltransferase CB4_03205 PF11964 SpoIIAA-like CB4_03208 PF08000 Bacterial PH domain CB4_03210 PF10101 CB4_03210 CB4_03212 PF07833 Copper amine oxidase N-terminal domain CB4_03212 PF12690 Intracellular proteinase inhibitor CB4_03213 PF01544 CorA-like Mg2+ transporter protein CB4_03214 PF01940 CB4_03214 CB4_03215 PF00719 Inorganic pyrophosphatase CB4_03217 PF06935 CB4_03217 CB4_03218 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CB4_03218 PF01842 ACT domain CB4_03218 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CB4_03219 PF13419 Haloacid dehalogenase-like hydrolase CB4_03220 PF00106 short chain dehydrogenase CB4_03221 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CB4_03222 PF03061 Thioesterase superfamily CB4_03223 PF00512 His Kinase A (phospho-acceptor) domain CB4_03223 PF00672 HAMP domain CB4_03223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03224 PF00072 Response regulator receiver domain CB4_03224 PF00486 Transcriptional regulatory protein, C terminal CB4_03225 PF13279 Thioesterase-like superfamily CB4_03227 PF00270 DEAD/DEAH box helicase CB4_03227 PF00271 Helicase conserved C-terminal domain CB4_03228 PF00512 His Kinase A (phospho-acceptor) domain CB4_03228 PF00672 HAMP domain CB4_03228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03229 PF00072 Response regulator receiver domain CB4_03229 PF00486 Transcriptional regulatory protein, C terminal CB4_03232 PF01578 CB4_03232 CB4_03233 PF05140 CB4_03233 CB4_03234 PF00578 AhpC/TSA family CB4_03236 PF00849 RNA pseudouridylate synthase CB4_03236 PF01479 S4 domain CB4_03238 PF07670 Nucleoside recognition CB4_03239 PF00768 D-alanyl-D-alanine carboxypeptidase CB4_03240 PF01566 CB4_03240 CB4_03242 PF14431 CB4_03242 CB4_03243 PF04079 Putative transcriptional regulators (Ypuh-like) CB4_03244 PF02616 ScpA/B protein CB4_03245 PF02163 Peptidase family M50 CB4_03246 PF00885 6,7-dimethyl-8-ribityllumazine synthase CB4_03247 PF00925 GTP cyclohydrolase II CB4_03247 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CB4_03248 PF00677 Lumazine binding domain CB4_03249 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CB4_03249 PF01872 RibD C-terminal domain CB4_03250 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CB4_03251 PF01986 CB4_03251 CB4_03252 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03252 PF00672 HAMP domain CB4_03252 PF12729 CB4_03252 CB4_03254 PF00270 DEAD/DEAH box helicase CB4_03254 PF00271 Helicase conserved C-terminal domain CB4_03255 PF10923 CB4_03255 CB4_03256 PF05154 CB4_03256 CB4_03256 PF13208 CB4_03256 CB4_03256 PF15615 CB4_03256 CB4_03257 PF13181 Tetratricopeptide repeat CB4_03258 PF06094 AIG2-like family CB4_03258 PF13772 AIG2-like family CB4_03259 PF00294 pfkB family carbohydrate kinase CB4_03260 PF00703 Glycosyl hydrolases family 2 CB4_03260 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CB4_03260 PF02837 Glycosyl hydrolases family 2, sugar binding domain CB4_03261 PF01979 Amidohydrolase family CB4_03262 PF01266 FAD dependent oxidoreductase CB4_03263 PF08943 CsiD CB4_03264 PF12986 Domain of unknown function (DUF3870) CB4_03265 PF00171 Aldehyde dehydrogenase family CB4_03266 PF00202 Aminotransferase class-III CB4_03267 PF00158 Sigma-54 interaction domain CB4_03268 PF00528 Binding-protein-dependent transport system inner membrane component CB4_03269 PF00528 Binding-protein-dependent transport system inner membrane component CB4_03270 PF13416 Bacterial extracellular solute-binding protein CB4_03271 PF00005 ABC transporter CB4_03271 PF08402 TOBE domain CB4_03272 PF01230 HIT domain CB4_03273 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CB4_03274 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CB4_03274 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CB4_03275 PF14097 CB4_03275 CB4_03276 PF03862 CB4_03276 CB4_03277 PF07451 Stage V sporulation protein AD (SpoVAD) CB4_03278 PF03862 CB4_03278 CB4_03279 PF13782 CB4_03279 CB4_03280 PF12164 Stage V sporulation protein AA CB4_03281 PF04539 Sigma-70 region 3 CB4_03281 PF04542 Sigma-70 region 2 CB4_03281 PF04545 Sigma-70, region 4 CB4_03282 PF13581 Histidine kinase-like ATPase domain CB4_03283 PF01740 STAS domain CB4_03284 PF00768 D-alanyl-D-alanine carboxypeptidase CB4_03284 PF07943 Penicillin-binding protein 5, C-terminal domain CB4_03286 PF03062 CB4_03286 CB4_03287 PF14286 DHHW protein CB4_03290 PF02567 Phenazine biosynthesis-like protein CB4_03291 PF00005 ABC transporter CB4_03291 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CB4_03292 PF00005 ABC transporter CB4_03292 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CB4_03293 PF00528 Binding-protein-dependent transport system inner membrane component CB4_03293 PF12911 CB4_03293 CB4_03294 PF00528 Binding-protein-dependent transport system inner membrane component CB4_03295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CB4_03296 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03296 PF00672 HAMP domain CB4_03296 PF12729 CB4_03296 CB4_03297 PF13129 CB4_03297 CB4_03298 PF01048 Phosphorylase superfamily CB4_03299 PF01048 Phosphorylase superfamily CB4_03300 PF01676 Metalloenzyme superfamily CB4_03301 PF00589 Phage integrase family CB4_03301 PF02899 Phage integrase, N-terminal SAM-like domain CB4_03302 PF14004 CB4_03302 CB4_03303 PF00905 Penicillin binding protein transpeptidase domain CB4_03303 PF03717 Penicillin-binding Protein dimerisation domain CB4_03304 PF13402 Peptidase M60-like family CB4_03304 PF17291 CB4_03304 CB4_03305 PF01475 Ferric uptake regulator family CB4_03306 PF01944 CB4_03306 CB4_03307 PF00293 NUDIX domain CB4_03308 PF12982 CB4_03308 CB4_03310 PF01546 Peptidase family M20/M25/M40 CB4_03310 PF07687 Peptidase dimerisation domain CB4_03312 PF01039 Carboxyl transferase domain CB4_03313 PF02310 B12 binding domain CB4_03313 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CB4_03314 PF01642 Methylmalonyl-CoA mutase CB4_03315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CB4_03315 PF00364 Biotin-requiring enzyme CB4_03315 PF02817 e3 binding domain CB4_03316 PF02779 Transketolase, pyrimidine binding domain CB4_03316 PF02780 Transketolase, C-terminal domain CB4_03317 PF00676 Dehydrogenase E1 component CB4_03318 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CB4_03318 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_03319 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CB4_03319 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CB4_03320 PF00158 Sigma-54 interaction domain CB4_03320 PF00989 PAS fold CB4_03320 PF02954 Bacterial regulatory protein, Fis family CB4_03321 PF00953 Glycosyl transferase family 4 CB4_03322 PF00535 Glycosyl transferase family 2 CB4_03324 PF00581 Rhodanese-like domain CB4_03325 PF01554 MatE CB4_03329 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03329 PF00672 HAMP domain CB4_03329 PF02743 Cache domain CB4_03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03330 PF07730 Histidine kinase CB4_03330 PF13188 PAS domain CB4_03331 PF00072 Response regulator receiver domain CB4_03331 PF00196 Bacterial regulatory proteins, luxR family CB4_03332 PF14169 CB4_03332 CB4_03333 PF13411 MerR HTH family regulatory protein CB4_03334 PF00571 CBS domain CB4_03334 PF01595 CB4_03334 CB4_03334 PF03471 Transporter associated domain CB4_03335 PF04298 CB4_03335 CB4_03337 PF01975 Survival protein SurE CB4_03339 PF13490 Putative zinc-finger CB4_03340 PF04542 Sigma-70 region 2 CB4_03340 PF08281 Sigma-70, region 4 CB4_03341 PF01569 PAP2 superfamily CB4_03342 PF01522 Polysaccharide deacetylase CB4_03343 PF01943 CB4_03343 CB4_03343 PF14667 Polysaccharide biosynthesis C-terminal domain CB4_03344 PF12671 CB4_03344 CB4_03346 PF00717 Peptidase S24-like CB4_03347 PF00171 Aldehyde dehydrogenase family CB4_03348 PF00892 EamA-like transporter family CB4_03350 PF00491 Arginase family CB4_03351 PF07285 CB4_03351 CB4_03352 PF00082 Subtilase family CB4_03355 PF14149 CB4_03355 CB4_03356 PF00579 tRNA synthetases class I (W and Y) CB4_03357 PF04391 CB4_03357 CB4_03358 PF12841 CB4_03358 CB4_03359 PF11148 CB4_03359 CB4_03360 PF07872 CB4_03360 CB4_03361 PF07238 PilZ domain CB4_03362 PF10727 Rossmann-like domain CB4_03362 PF10728 Domain of unknown function (DUF2520) CB4_03363 PF01865 Protein of unknown function DUF47 CB4_03364 PF01384 CB4_03364 CB4_03367 PF01152 Bacterial-like globin CB4_03369 PF01464 Transglycosylase SLT domain CB4_03370 PF00501 AMP-binding enzyme CB4_03370 PF13193 AMP-binding enzyme C-terminal domain CB4_03372 PF01329 Pterin 4 alpha carbinolamine dehydratase CB4_03373 PF00512 His Kinase A (phospho-acceptor) domain CB4_03373 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03374 PF00072 Response regulator receiver domain CB4_03375 PF00512 His Kinase A (phospho-acceptor) domain CB4_03375 PF00672 HAMP domain CB4_03375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03376 PF02608 Basic membrane protein CB4_03377 PF00072 Response regulator receiver domain CB4_03377 PF02954 Bacterial regulatory protein, Fis family CB4_03379 PF00440 Bacterial regulatory proteins, tetR family CB4_03385 PF06491 Disulphide isomerase CB4_03386 PF01522 Polysaccharide deacetylase CB4_03387 PF12679 CB4_03387 CB4_03388 PF00005 ABC transporter CB4_03389 PF13472 GDSL-like Lipase/Acylhydrolase family CB4_03390 PF00877 NlpC/P60 family CB4_03391 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CB4_03391 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CB4_03391 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CB4_03391 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CB4_03392 PF00365 Phosphofructokinase CB4_03393 PF00480 ROK family CB4_03394 PF14518 Iron-containing redox enzyme CB4_03395 PF03547 CB4_03395 CB4_03396 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03396 PF11563 Protoglobin CB4_03398 PF13581 Histidine kinase-like ATPase domain CB4_03399 PF01740 STAS domain CB4_03400 PF07228 Stage II sporulation protein E (SpoIIE) CB4_03400 PF08448 PAS fold CB4_03400 PF13426 PAS domain CB4_03401 PF07690 Major Facilitator Superfamily CB4_03402 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_03403 PF01144 Coenzyme A transferase CB4_03404 PF01144 Coenzyme A transferase CB4_03406 PF00158 Sigma-54 interaction domain CB4_03409 PF05163 DinB family CB4_03412 PF00583 Acetyltransferase (GNAT) family CB4_03413 PF06803 CB4_03413 CB4_03414 PF09835 CB4_03414 CB4_03415 PF00005 ABC transporter CB4_03416 PF02653 CB4_03416 CB4_03417 PF04392 ABC transporter substrate binding protein CB4_03418 PF00849 RNA pseudouridylate synthase CB4_03419 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CB4_03419 PF00364 Biotin-requiring enzyme CB4_03419 PF00682 HMGL-like CB4_03419 PF02436 Conserved carboxylase domain CB4_03419 PF02785 Biotin carboxylase C-terminal domain CB4_03419 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CB4_03422 PF00589 Phage integrase family CB4_03423 PF00589 Phage integrase family CB4_03424 PF12728 Helix-turn-helix domain CB4_03425 PF09579 CB4_03425 CB4_03426 PF11167 CB4_03426 CB4_03427 PF00395 S-layer homology domain CB4_03428 PF01144 Coenzyme A transferase CB4_03429 PF01144 Coenzyme A transferase CB4_03430 PF13520 Amino acid permease CB4_03431 PF00501 AMP-binding enzyme CB4_03431 PF13193 AMP-binding enzyme C-terminal domain CB4_03432 PF00269 Small, acid-soluble spore proteins, alpha/beta type CB4_03433 PF03741 CB4_03433 CB4_03434 PF00027 Cyclic nucleotide-binding domain CB4_03434 PF13545 Crp-like helix-turn-helix domain CB4_03435 PF03473 MOSC domain CB4_03435 PF03475 3-alpha domain CB4_03436 PF00072 Response regulator receiver domain CB4_03437 PF00072 Response regulator receiver domain CB4_03437 PF00512 His Kinase A (phospho-acceptor) domain CB4_03437 PF00672 HAMP domain CB4_03437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03437 PF13185 GAF domain CB4_03437 PF13426 PAS domain CB4_03438 PF00072 Response regulator receiver domain CB4_03438 PF00990 GGDEF domain CB4_03438 PF01627 Hpt domain CB4_03439 PF00551 Formyl transferase CB4_03439 PF01842 ACT domain CB4_03440 PF01227 GTP cyclohydrolase I CB4_03441 PF08282 haloacid dehalogenase-like hydrolase CB4_03442 PF03445 CB4_03442 CB4_03442 PF10335 CB4_03442 CB4_03443 PF00909 Ammonium Transporter Family CB4_03444 PF01569 PAP2 superfamily CB4_03446 PF01152 Bacterial-like globin CB4_03447 PF01008 Initiation factor 2 subunit family CB4_03448 PF01575 MaoC like domain CB4_03449 PF09602 CB4_03449 CB4_03450 PF03551 Transcriptional regulator PadR-like family CB4_03451 PF09712 CB4_03451 CB4_03452 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_03453 PF00561 alpha/beta hydrolase fold CB4_03454 PF02568 Thiamine biosynthesis protein (ThiI) CB4_03454 PF02926 THUMP domain CB4_03455 PF00266 Aminotransferase class-V CB4_03458 PF07561 CB4_03458 CB4_03459 PF01546 Peptidase family M20/M25/M40 CB4_03459 PF07687 Peptidase dimerisation domain CB4_03460 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_03461 PF00106 short chain dehydrogenase CB4_03462 PF04070 CB4_03462 CB4_03465 PF01609 Transposase DDE domain CB4_03469 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase CB4_03470 PF12831 FAD dependent oxidoreductase CB4_03471 PF00766 Electron transfer flavoprotein FAD-binding domain CB4_03471 PF01012 Electron transfer flavoprotein domain CB4_03471 PF12838 4Fe-4S dicluster domain CB4_03472 PF01012 Electron transfer flavoprotein domain CB4_03474 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CB4_03475 PF01039 Carboxyl transferase domain CB4_03476 PF00465 Iron-containing alcohol dehydrogenase CB4_03477 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_03479 PF02596 CB4_03479 CB4_03480 PF03486 HI0933-like protein CB4_03481 PF00027 Cyclic nucleotide-binding domain CB4_03481 PF00571 CBS domain CB4_03481 PF03445 CB4_03481 CB4_03481 PF10335 CB4_03481 CB4_03482 PF04341 CB4_03482 CB4_03483 PF00474 Sodium:solute symporter family CB4_03484 PF04536 TLP18 CB4_03484 PF06160 CB4_03484 CB4_03485 PF00440 Bacterial regulatory proteins, tetR family CB4_03486 PF09335 CB4_03486 CB4_03487 PF00753 Metallo-beta-lactamase superfamily CB4_03488 PF00990 GGDEF domain CB4_03488 PF13492 GAF domain CB4_03489 PF00300 Histidine phosphatase superfamily (branch 1) CB4_03490 PF00291 Pyridoxal-phosphate dependent enzyme CB4_03491 PF00892 EamA-like transporter family CB4_03492 PF00163 Ribosomal protein S4/S9 N-terminal domain CB4_03492 PF01479 S4 domain CB4_03493 PF13411 MerR HTH family regulatory protein CB4_03494 PF07690 Major Facilitator Superfamily CB4_03495 PF13487 HD domain CB4_03496 PF07730 Histidine kinase CB4_03497 PF00072 Response regulator receiver domain CB4_03497 PF00196 Bacterial regulatory proteins, luxR family CB4_03498 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03498 PF00672 HAMP domain CB4_03498 PF02743 Cache domain CB4_03499 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03499 PF07730 Histidine kinase CB4_03499 PF17159 CB4_03499 CB4_03500 PF00579 tRNA synthetases class I (W and Y) CB4_03500 PF01479 S4 domain CB4_03501 PF00905 Penicillin binding protein transpeptidase domain CB4_03501 PF00912 Transglycosylase CB4_03502 PF00501 AMP-binding enzyme CB4_03502 PF13193 AMP-binding enzyme C-terminal domain CB4_03504 PF00571 CBS domain CB4_03504 PF01842 ACT domain CB4_03505 PF00850 Histone deacetylase domain CB4_03506 PF01048 Phosphorylase superfamily CB4_03507 PF00356 Bacterial regulatory proteins, lacI family CB4_03507 PF13377 Periplasmic binding protein-like domain CB4_03508 PF00793 DAHP synthetase I family CB4_03508 PF01817 Chorismate mutase type II CB4_03509 PF14450 Cell division protein FtsA CB4_03514 PF11009 Protein of unknown function (DUF2847) CB4_03515 PF00180 Isocitrate/isopropylmalate dehydrogenase CB4_03519 PF13365 Trypsin-like peptidase domain CB4_03520 PF00009 Elongation factor Tu GTP binding domain CB4_03520 PF16658 CB4_03520 CB4_03521 PF09580 CB4_03521 CB4_03522 PF00571 CBS domain CB4_03523 PF01098 CB4_03523 CB4_03524 PF01098 CB4_03524 CB4_03525 PF00571 CBS domain CB4_03525 PF03448 MgtE intracellular N domain CB4_03526 PF02308 CB4_03526 CB4_03527 PF00122 E1-E2 ATPase CB4_03527 PF00689 Cation transporting ATPase, C-terminus CB4_03527 PF00690 Cation transporter/ATPase, N-terminus CB4_03527 PF00702 haloacid dehalogenase-like hydrolase CB4_03529 PF13552 CB4_03529 CB4_03532 PF11007 CB4_03532 CB4_03533 PF12652 CB4_03533 CB4_03534 PF05067 Manganese containing catalase CB4_03535 PF00881 Nitroreductase family CB4_03536 PF03838 Recombination protein U CB4_03537 PF03745 Domain of unknown function (DUF309) CB4_03538 PF00462 Glutaredoxin CB4_03538 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_03539 PF07833 Copper amine oxidase N-terminal domain CB4_03553 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CB4_03554 PF00395 S-layer homology domain CB4_03554 PF03413 Peptidase propeptide and YPEB domain CB4_03555 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_03556 PF01243 Pyridoxamine 5'-phosphate oxidase CB4_03557 PF00005 ABC transporter CB4_03557 PF12399 Branched-chain amino acid ATP-binding cassette transporter CB4_03558 PF00005 ABC transporter CB4_03558 PF12399 Branched-chain amino acid ATP-binding cassette transporter CB4_03559 PF02653 CB4_03559 CB4_03560 PF02653 CB4_03560 CB4_03561 PF13458 Periplasmic binding protein CB4_03562 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CB4_03563 PF00171 Aldehyde dehydrogenase family CB4_03564 PF00701 Dihydrodipicolinate synthetase family CB4_03565 PF00392 Bacterial regulatory proteins, gntR family CB4_03565 PF07729 FCD domain CB4_03567 PF01967 MoaC family CB4_03568 PF04055 Radical SAM superfamily CB4_03568 PF06463 Molybdenum Cofactor Synthesis C CB4_03568 PF13353 4Fe-4S single cluster domain CB4_03569 PF00899 ThiF family CB4_03572 PF08713 DNA alkylation repair enzyme CB4_03574 PF01580 FtsK/SpoIIIE family CB4_03574 PF09397 Ftsk gamma domain CB4_03578 PF01385 CB4_03578 CB4_03578 PF07282 CB4_03578 CB4_03578 PF12323 CB4_03578 CB4_03579 PF00920 Dehydratase family CB4_03580 PF03734 L,D-transpeptidase catalytic domain CB4_03581 PF00892 EamA-like transporter family CB4_03582 PF12669 CB4_03582 CB4_03583 PF02421 Ferrous iron transport protein B CB4_03583 PF07664 CB4_03583 CB4_03583 PF07670 Nucleoside recognition CB4_03584 PF04023 FeoA domain CB4_03585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CB4_03585 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CB4_03586 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase CB4_03587 PF13533 Biotin-lipoyl like CB4_03587 PF16576 CB4_03587 CB4_03588 PF00005 ABC transporter CB4_03589 PF12698 ABC-2 family transporter protein CB4_03590 PF00440 Bacterial regulatory proteins, tetR family CB4_03591 PF00849 RNA pseudouridylate synthase CB4_03591 PF01479 S4 domain CB4_03593 PF00905 Penicillin binding protein transpeptidase domain CB4_03593 PF00912 Transglycosylase CB4_03594 PF06014 Bacterial protein of unknown function (DUF910) CB4_03595 PF14489 QueF-like protein CB4_03596 PF06508 Queuosine biosynthesis protein QueC CB4_03597 PF04055 Radical SAM superfamily CB4_03597 PF13394 4Fe-4S single cluster domain CB4_03598 PF01242 6-pyruvoyl tetrahydropterin synthase CB4_03599 PF00459 Inositol monophosphatase family CB4_03600 PF08241 Methyltransferase domain CB4_03603 PF03741 CB4_03603 CB4_03604 PF01401 Angiotensin-converting enzyme CB4_03605 PF00270 DEAD/DEAH box helicase CB4_03605 PF00271 Helicase conserved C-terminal domain CB4_03606 PF02581 Thiamine monophosphate synthase/TENI CB4_03607 PF01266 FAD dependent oxidoreductase CB4_03608 PF02597 ThiS family CB4_03609 PF05690 Thiazole biosynthesis protein ThiG CB4_03610 PF00563 EAL domain CB4_03610 PF00990 GGDEF domain CB4_03610 PF13426 PAS domain CB4_03611 PF00682 HMGL-like CB4_03611 PF08502 LeuA allosteric (dimerisation) domain CB4_03612 PF11307 CB4_03612 CB4_03613 PF08369 Proto-chlorophyllide reductase 57 kD subunit CB4_03613 PF11084 CB4_03613 CB4_03614 PF05977 Transmembrane secretion effector CB4_03614 PF07690 Major Facilitator Superfamily CB4_03616 PF13798 CB4_03616 CB4_03617 PF04055 Radical SAM superfamily CB4_03617 PF16199 CB4_03617 CB4_03618 PF04284 CB4_03618 CB4_03619 PF00270 DEAD/DEAH box helicase CB4_03619 PF00271 Helicase conserved C-terminal domain CB4_03620 PF00009 Elongation factor Tu GTP binding domain CB4_03620 PF00679 Elongation factor G C-terminus CB4_03620 PF03144 Elongation factor Tu domain 2 CB4_03622 PF00313 'Cold-shock' DNA-binding domain CB4_03623 PF12146 Putative lysophospholipase CB4_03625 PF01293 Phosphoenolpyruvate carboxykinase CB4_03627 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CB4_03627 PF02770 Acyl-CoA dehydrogenase, middle domain CB4_03627 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CB4_03628 PF02515 CoA-transferase family III CB4_03629 PF05116 Sucrose-6F-phosphate phosphohydrolase CB4_03630 PF00534 Glycosyl transferases group 1 CB4_03630 PF13439 Glycosyltransferase Family 4 CB4_03631 PF00753 Metallo-beta-lactamase superfamily CB4_03632 PF01609 Transposase DDE domain CB4_03635 PF00107 Zinc-binding dehydrogenase CB4_03635 PF08240 Alcohol dehydrogenase GroES-like domain CB4_03636 PF06942 CB4_03636 CB4_03637 PF13420 Acetyltransferase (GNAT) domain CB4_03638 PF03466 LysR substrate binding domain CB4_03639 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03639 PF00672 HAMP domain CB4_03640 PF01522 Polysaccharide deacetylase CB4_03642 PF00881 Nitroreductase family CB4_03643 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03643 PF02743 Cache domain CB4_03644 PF00190 Cupin CB4_03645 PF00395 S-layer homology domain CB4_03645 PF01436 NHL repeat CB4_03645 PF02368 Bacterial Ig-like domain (group 2) CB4_03645 PF08450 SMP-30/Gluconolaconase/LRE-like region CB4_03645 PF12733 CB4_03645 CB4_03646 PF02698 DUF218 domain CB4_03647 PF02589 Uncharacterised ACR, YkgG family COG1556 CB4_03648 PF02589 Uncharacterised ACR, YkgG family COG1556 CB4_03648 PF11870 CB4_03648 CB4_03648 PF13183 4Fe-4S dicluster domain CB4_03649 PF02754 CB4_03649 CB4_03651 PF01557 Fumarylacetoacetate (FAA) hydrolase family CB4_03652 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_03653 PF00501 AMP-binding enzyme CB4_03653 PF13193 AMP-binding enzyme C-terminal domain CB4_03654 PF03180 NLPA lipoprotein CB4_03655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03655 PF00672 HAMP domain CB4_03655 PF02743 Cache domain CB4_03656 PF07195 CB4_03656 CB4_03657 PF00501 AMP-binding enzyme CB4_03657 PF14535 AMP-binding enzyme C-terminal domain CB4_03658 PF00378 Enoyl-CoA hydratase/isomerase family CB4_03659 PF07848 PaaX-like protein CB4_03659 PF08223 PaaX-like protein C-terminal domain CB4_03661 PF03061 Thioesterase superfamily CB4_03662 PF00378 Enoyl-CoA hydratase/isomerase family CB4_03663 PF00378 Enoyl-CoA hydratase/isomerase family CB4_03664 PF03061 Thioesterase superfamily CB4_03665 PF07110 EthD domain CB4_03666 PF13487 HD domain CB4_03667 PF03061 Thioesterase superfamily CB4_03670 PF01964 ThiC family CB4_03670 PF13667 ThiC-associated domain CB4_03671 PF13407 Periplasmic binding protein domain CB4_03672 PF02653 CB4_03672 CB4_03673 PF00005 ABC transporter CB4_03674 PF05025 RbsD / FucU transport protein family CB4_03675 PF00294 pfkB family carbohydrate kinase CB4_03676 PF00356 Bacterial regulatory proteins, lacI family CB4_03676 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CB4_03678 PF09388 Spo0E like sporulation regulatory protein CB4_03681 PF02666 CB4_03681 CB4_03684 PF13380 CoA binding domain CB4_03686 PF00453 Ribosomal protein L20 CB4_03687 PF01632 Ribosomal protein L35 CB4_03688 PF00707 Translation initiation factor IF-3, C-terminal domain CB4_03688 PF05198 Translation initiation factor IF-3, N-terminal domain CB4_03689 PF00563 EAL domain CB4_03689 PF00571 CBS domain CB4_03689 PF00990 GGDEF domain CB4_03690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03690 PF00672 HAMP domain CB4_03690 PF02743 Cache domain CB4_03691 PF01548 CB4_03691 CB4_03691 PF02371 CB4_03691 CB4_03692 PF00027 Cyclic nucleotide-binding domain CB4_03692 PF13545 Crp-like helix-turn-helix domain CB4_03695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CB4_03695 PF02824 TGS domain CB4_03695 PF03129 Anticodon binding domain CB4_03695 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CB4_03696 PF08812 CB4_03696 CB4_03697 PF01548 CB4_03697 CB4_03697 PF02371 CB4_03697 CB4_03698 PF00005 ABC transporter CB4_03699 PF01385 CB4_03699 CB4_03699 PF07282 CB4_03699 CB4_03701 PF10055 CB4_03701 CB4_03702 PF07238 PilZ domain CB4_03702 PF12945 Flagellar protein YcgR CB4_03703 PF04055 Radical SAM superfamily CB4_03705 PF01695 IstB-like ATP binding protein CB4_03705 PF07319 Primosomal protein DnaI N-terminus CB4_03706 PF07261 Replication initiation and membrane attachment CB4_03707 PF00753 Metallo-beta-lactamase superfamily CB4_03707 PF07521 RNA-metabolising metallo-beta-lactamase CB4_03707 PF10996 Beta-Casp domain CB4_03708 PF03477 ATP cone domain CB4_03709 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CB4_03709 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CB4_03710 PF01464 Transglycosylase SLT domain CB4_03711 PF01121 Dephospho-CoA kinase CB4_03712 PF02659 CB4_03712 CB4_03713 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CB4_03713 PF06827 Zinc finger found in FPG and IleRS CB4_03713 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CB4_03714 PF00476 DNA polymerase family A CB4_03714 PF01367 5'-3' exonuclease, C-terminal SAM fold CB4_03714 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CB4_03715 PF01145 SPFH domain / Band 7 family CB4_03716 PF00512 His Kinase A (phospho-acceptor) domain CB4_03716 PF00672 HAMP domain CB4_03716 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03716 PF08448 PAS fold CB4_03716 PF16736 CB4_03716 CB4_03717 PF00072 Response regulator receiver domain CB4_03717 PF00486 Transcriptional regulatory protein, C terminal CB4_03718 PF00056 lactate/malate dehydrogenase, NAD binding domain CB4_03718 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CB4_03719 PF00180 Isocitrate/isopropylmalate dehydrogenase CB4_03720 PF00285 Citrate synthase CB4_03721 PF01594 CB4_03721 CB4_03722 PF04186 CB4_03722 CB4_03723 PF03061 Thioesterase superfamily CB4_03724 PF00224 Pyruvate kinase, barrel domain CB4_03724 PF00391 PEP-utilising enzyme, mobile domain CB4_03724 PF02887 Pyruvate kinase, alpha/beta domain CB4_03725 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CB4_03726 PF01039 Carboxyl transferase domain CB4_03727 PF00392 Bacterial regulatory proteins, gntR family CB4_03727 PF07729 FCD domain CB4_03728 PF00390 Malic enzyme, N-terminal domain CB4_03728 PF03949 Malic enzyme, NAD binding domain CB4_03729 PF01336 OB-fold nucleic acid binding domain CB4_03729 PF02811 PHP domain CB4_03729 PF07733 Bacterial DNA polymerase III alpha subunit CB4_03729 PF14579 Helix-hairpin-helix motif CB4_03730 PF14034 CB4_03730 CB4_03733 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CB4_03733 PF13378 Enolase C-terminal domain-like CB4_03734 PF04235 CB4_03734 CB4_03735 PF02678 Pirin CB4_03736 PF01047 MarR family CB4_03738 PF13487 HD domain CB4_03740 PF00392 Bacterial regulatory proteins, gntR family CB4_03740 PF00571 CBS domain CB4_03740 PF03061 Thioesterase superfamily CB4_03740 PF07085 DRTGG domain CB4_03742 PF02390 Putative methyltransferase CB4_03743 PF13483 Beta-lactamase superfamily domain CB4_03744 PF14398 CB4_03744 CB4_03745 PF14398 CB4_03745 CB4_03746 PF14398 CB4_03746 CB4_03748 PF14398 CB4_03748 CB4_03750 PF00563 EAL domain CB4_03750 PF00990 GGDEF domain CB4_03751 PF00155 Aminotransferase class I and II CB4_03752 PF00293 NUDIX domain CB4_03752 PF14803 Nudix N-terminal CB4_03753 PF04463 CB4_03753 CB4_03754 PF14256 CB4_03754 CB4_03755 PF02583 Metal-sensitive transcriptional repressor CB4_03756 PF12229 Putative peptidoglycan binding domain CB4_03757 PF05239 PRC-barrel domain CB4_03760 PF12840 Helix-turn-helix domain CB4_03761 PF12146 Putative lysophospholipase CB4_03762 PF11750 CB4_03762 CB4_03763 PF01436 NHL repeat CB4_03763 PF07833 Copper amine oxidase N-terminal domain CB4_03763 PF08450 SMP-30/Gluconolaconase/LRE-like region CB4_03764 PF04773 FecR protein CB4_03765 PF00211 Adenylate and Guanylate cyclase catalytic domain CB4_03765 PF05226 CB4_03765 CB4_03766 PF00027 Cyclic nucleotide-binding domain CB4_03767 PF13358 DDE superfamily endonuclease CB4_03768 PF13551 Winged helix-turn helix CB4_03768 PF13592 CB4_03768 CB4_03769 PF13753 Putative flagellar system-associated repeat CB4_03770 PF00027 Cyclic nucleotide-binding domain CB4_03770 PF00939 Sodium:sulfate symporter transmembrane region CB4_03772 PF00512 His Kinase A (phospho-acceptor) domain CB4_03772 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03773 PF06865 Protein of unknown function (DUF1255) CB4_03774 PF02073 Thermophilic metalloprotease (M29) CB4_03775 PF00149 Calcineurin-like phosphoesterase CB4_03776 PF02872 5'-nucleotidase, C-terminal domain CB4_03777 PF00293 NUDIX domain CB4_03778 PF00355 Rieske [2Fe-2S] domain CB4_03778 PF01266 FAD dependent oxidoreductase CB4_03791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_03793 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CB4_03795 PF00395 S-layer homology domain CB4_03796 PF04293 CB4_03796 CB4_03798 PF13676 TIR domain CB4_03799 PF00239 Resolvase, N terminal domain CB4_03799 PF07508 Recombinase CB4_03800 PF00239 Resolvase, N terminal domain CB4_03800 PF07508 Recombinase CB4_03801 PF12844 Helix-turn-helix domain CB4_03803 PF00239 Resolvase, N terminal domain CB4_03803 PF07508 Recombinase CB4_03803 PF13408 Recombinase zinc beta ribbon domain CB4_03804 PF00395 S-layer homology domain CB4_03804 PF01436 NHL repeat CB4_03804 PF07532 CB4_03804 CB4_03805 PF00395 S-layer homology domain CB4_03806 PF13650 Aspartyl protease CB4_03808 PF04293 CB4_03808 CB4_03809 PF11964 SpoIIAA-like CB4_03810 PF01385 CB4_03810 CB4_03811 PF01797 Transposase IS200 like CB4_03813 PF07561 CB4_03813 CB4_03816 PF04542 Sigma-70 region 2 CB4_03817 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03817 PF00672 HAMP domain CB4_03817 PF02743 Cache domain CB4_03818 PF00239 Resolvase, N terminal domain CB4_03818 PF07508 Recombinase CB4_03819 PF08238 Sel1 repeat CB4_03820 PF04285 CB4_03820 CB4_03821 PF06798 CB4_03821 CB4_03821 PF08298 PrkA AAA domain CB4_03822 PF03992 Antibiotic biosynthesis monooxygenase CB4_03823 PF13152 CB4_03823 CB4_03824 PF03180 NLPA lipoprotein CB4_03825 PF13419 Haloacid dehalogenase-like hydrolase CB4_03826 PF00588 SpoU rRNA Methylase family CB4_03827 PF12671 CB4_03827 CB4_03828 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CB4_03828 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CB4_03829 PF08331 CB4_03829 CB4_03829 PF13484 CB4_03829 CB4_03829 PF13646 HEAT repeats CB4_03830 PF00075 RNase H CB4_03831 PF07690 Major Facilitator Superfamily CB4_03832 PF00860 Permease family CB4_03833 PF03167 Uracil DNA glycosylase superfamily CB4_03834 PF00107 Zinc-binding dehydrogenase CB4_03834 PF00378 Enoyl-CoA hydratase/isomerase family CB4_03834 PF00501 AMP-binding enzyme CB4_03834 PF13193 AMP-binding enzyme C-terminal domain CB4_03834 PF16177 CB4_03834 CB4_03835 PF03167 Uracil DNA glycosylase superfamily CB4_03855 PF14540 Nucleotidyltransferase-like CB4_03856 PF01475 Ferric uptake regulator family CB4_03864 PF01923 Cobalamin adenosyltransferase CB4_03865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CB4_03865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CB4_03866 PF00578 AhpC/TSA family CB4_03867 PF06182 CB4_03867 CB4_03868 PF00395 S-layer homology domain CB4_03869 PF02659 CB4_03869 CB4_03870 PF04693 CB4_03870 CB4_03872 PF17247 CB4_03872 CB4_03874 PF13248 CB4_03874 CB4_03877 PF11337 CB4_03877 CB4_03880 PF06182 CB4_03880 CB4_03881 PF00005 ABC transporter CB4_03882 PF00202 Aminotransferase class-III CB4_03883 PF00310 Glutamine amidotransferases class-II CB4_03883 PF01493 GXGXG motif CB4_03883 PF01645 Conserved region in glutamate synthase CB4_03883 PF04898 Glutamate synthase central domain CB4_03884 PF06081 CB4_03884 CB4_03885 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CB4_03886 PF12710 haloacid dehalogenase-like hydrolase CB4_03887 PF00596 Class II Aldolase and Adducin N-terminal domain CB4_03888 PF03079 ARD/ARD' family CB4_03889 PF07731 Multicopper oxidase CB4_03889 PF07732 Multicopper oxidase CB4_03892 PF00392 Bacterial regulatory proteins, gntR family CB4_03893 PF00005 ABC transporter CB4_03894 PF00749 tRNA synthetases class I (E and Q), catalytic domain CB4_03894 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CB4_03895 PF00005 ABC transporter CB4_03895 PF00664 ABC transporter transmembrane region CB4_03896 PF04167 Protein of unknown function (DUF402) CB4_03897 PF00583 Acetyltransferase (GNAT) family CB4_03899 PF13561 Enoyl-(Acyl carrier protein) reductase CB4_03900 PF00106 short chain dehydrogenase CB4_03902 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CB4_03902 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CB4_03903 PF13027 CB4_03903 CB4_03904 PF01027 Inhibitor of apoptosis-promoting Bax1 CB4_03905 PF07238 PilZ domain CB4_03906 PF00633 Helix-hairpin-helix motif CB4_03906 PF00730 HhH-GPD superfamily base excision DNA repair protein CB4_03906 PF14815 NUDIX domain CB4_03907 PF05977 Transmembrane secretion effector CB4_03908 PF04307 CB4_03908 CB4_03909 PF03672 CB4_03909 CB4_03910 PF00188 Cysteine-rich secretory protein family CB4_03910 PF14504 CAP-associated N-terminal CB4_03911 PF02525 Flavodoxin-like fold CB4_03912 PF01554 MatE CB4_03913 PF01583 Adenylylsulphate kinase CB4_03914 PF01747 ATP-sulfurylase CB4_03914 PF14306 PUA-like domain CB4_03915 PF01507 Phosphoadenosine phosphosulfate reductase family CB4_03916 PF01384 CB4_03916 CB4_03917 PF13046 CB4_03917 CB4_03918 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CB4_03918 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CB4_03919 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CB4_03920 PF00202 Aminotransferase class-III CB4_03921 PF00171 Aldehyde dehydrogenase family CB4_03922 PF00158 Sigma-54 interaction domain CB4_03922 PF13426 PAS domain CB4_03924 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03924 PF00672 HAMP domain CB4_03924 PF02743 Cache domain CB4_03926 PF01385 CB4_03926 CB4_03926 PF07282 CB4_03926 CB4_03926 PF12323 CB4_03926 CB4_03928 PF03845 CB4_03928 CB4_03929 PF03323 CB4_03929 CB4_03930 PF05504 Spore germination B3/ GerAC like, C-terminal CB4_03933 PF01066 CDP-alcohol phosphatidyltransferase CB4_03934 PF00849 RNA pseudouridylate synthase CB4_03934 PF01479 S4 domain CB4_03936 PF07833 Copper amine oxidase N-terminal domain CB4_03937 PF00072 Response regulator receiver domain CB4_03940 PF10719 CB4_03940 CB4_03941 PF03537 Glycoside-hydrolase family GH114 CB4_03942 PF13487 HD domain CB4_03943 PF10066 CB4_03943 CB4_03944 PF00535 Glycosyl transferase family 2 CB4_03945 PF03023 CB4_03945 CB4_03946 PF01522 Polysaccharide deacetylase CB4_03946 PF11959 CB4_03946 CB4_03947 PF02655 ATP-grasp domain CB4_03952 PF00534 Glycosyl transferases group 1 CB4_03952 PF11997 CB4_03952 CB4_03954 PF07799 CB4_03954 CB4_03956 PF01381 Helix-turn-helix CB4_03956 PF06114 Domain of unknown function (DUF955) CB4_03959 PF06527 CB4_03959 CB4_03959 PF15978 CB4_03959 CB4_03960 PF05621 CB4_03960 CB4_03961 PF00665 Integrase core domain CB4_03962 PF08721 TnsA endonuclease C terminal CB4_03962 PF08722 TnsA endonuclease N terminal CB4_03966 PF00239 Resolvase, N terminal domain CB4_03967 PF13365 Trypsin-like peptidase domain CB4_03968 PF13148 CB4_03968 CB4_03969 PF00176 SNF2 family N-terminal domain CB4_03969 PF00271 Helicase conserved C-terminal domain CB4_03971 PF08665 CB4_03971 CB4_03973 PF02384 N-6 DNA Methylase CB4_03975 PF08747 Domain of unknown function (DUF1788) CB4_03976 PF08849 Putative inner membrane protein (DUF1819) CB4_03977 PF06054 CB4_03977 CB4_03977 PF13034 CB4_03977 CB4_03979 PF01381 Helix-turn-helix CB4_03983 PF01938 TRAM domain CB4_03983 PF05958 tRNA (Uracil-5-)-methyltransferase CB4_03984 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03984 PF11563 Protoglobin CB4_03984 PF13682 Chemoreceptor zinc-binding domain CB4_03986 PF17259 CB4_03986 CB4_03987 PF01545 Cation efflux family CB4_03988 PF01022 Bacterial regulatory protein, arsR family CB4_03989 PF03061 Thioesterase superfamily CB4_03990 PF00561 alpha/beta hydrolase fold CB4_03991 PF02673 CB4_03991 CB4_03992 PF00581 Rhodanese-like domain CB4_03993 PF06569 CB4_03993 CB4_03994 PF01544 CorA-like Mg2+ transporter protein CB4_03995 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CB4_03995 PF07992 Pyridine nucleotide-disulphide oxidoreductase CB4_03996 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CB4_03996 PF00364 Biotin-requiring enzyme CB4_03996 PF02817 e3 binding domain CB4_03997 PF02779 Transketolase, pyrimidine binding domain CB4_03997 PF02780 Transketolase, C-terminal domain CB4_03998 PF00676 Dehydrogenase E1 component CB4_03999 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_03999 PF00672 HAMP domain CB4_03999 PF02743 Cache domain CB4_04000 PF00528 Binding-protein-dependent transport system inner membrane component CB4_04001 PF00005 ABC transporter CB4_04001 PF09383 NIL domain CB4_04002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_04002 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CB4_04003 PF04647 CB4_04003 CB4_04006 PF00176 SNF2 family N-terminal domain CB4_04006 PF00271 Helicase conserved C-terminal domain CB4_04006 PF12419 CB4_04006 CB4_04007 PF00005 ABC transporter CB4_04007 PF00027 Cyclic nucleotide-binding domain CB4_04007 PF00664 ABC transporter transmembrane region CB4_04008 PF00856 SET domain CB4_04009 PF13539 D-alanyl-D-alanine carboxypeptidase CB4_04010 PF01435 Peptidase family M48 CB4_04015 PF00085 Thioredoxin CB4_04019 PF03061 Thioesterase superfamily CB4_04020 PF13473 Cupredoxin-like domain CB4_04021 PF00581 Rhodanese-like domain CB4_04022 PF00586 AIR synthase related protein, N-terminal domain CB4_04022 PF02769 AIR synthase related protein, C-terminal domain CB4_04023 PF00877 NlpC/P60 family CB4_04025 PF00248 Aldo/keto reductase family CB4_04026 PF00881 Nitroreductase family CB4_04027 PF01638 HxlR-like helix-turn-helix CB4_04028 PF01037 AsnC family CB4_04029 PF07690 Major Facilitator Superfamily CB4_04030 PF13520 Amino acid permease CB4_04035 PF12645 CB4_04035 CB4_04037 PF00395 S-layer homology domain CB4_04037 PF01436 NHL repeat CB4_04037 PF12733 CB4_04037 CB4_04038 PF00072 Response regulator receiver domain CB4_04038 PF00196 Bacterial regulatory proteins, luxR family CB4_04039 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_04039 PF06580 CB4_04039 CB4_04039 PF07694 5TMR of 5TMR-LYT CB4_04040 PF01527 Transposase CB4_04041 PF00665 Integrase core domain CB4_04041 PF13276 CB4_04041 CB4_04044 PF11964 SpoIIAA-like CB4_04045 PF01385 CB4_04045 CB4_04045 PF07282 CB4_04045 CB4_04045 PF12323 CB4_04045 CB4_04063 PF00892 EamA-like transporter family CB4_04064 PF01385 CB4_04064 CB4_04064 PF07282 CB4_04064 CB4_04065 PF01797 Transposase IS200 like CB4_04067 PF03551 Transcriptional regulator PadR-like family CB4_04068 PF00106 short chain dehydrogenase CB4_04069 PF01177 Asp/Glu/Hydantoin racemase CB4_04072 PF09346 SMI1 / KNR4 family (SUKH-1) CB4_04074 PF00395 S-layer homology domain CB4_04075 PF00041 Fibronectin type III domain CB4_04075 PF00395 S-layer homology domain CB4_04075 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) CB4_04076 PF00196 Bacterial regulatory proteins, luxR family CB4_04078 PF01938 TRAM domain CB4_04078 PF05958 tRNA (Uracil-5-)-methyltransferase CB4_04079 PF00781 Diacylglycerol kinase catalytic domain CB4_04080 PF02754 CB4_04080 CB4_04080 PF13183 4Fe-4S dicluster domain CB4_04081 PF01565 FAD binding domain CB4_04081 PF02913 FAD linked oxidases, C-terminal domain CB4_04082 PF00392 Bacterial regulatory proteins, gntR family CB4_04082 PF07729 FCD domain CB4_04083 PF01903 CbiX CB4_04084 PF00625 Guanylate kinase CB4_04085 PF14595 Thioredoxin CB4_04086 PF00892 EamA-like transporter family CB4_04087 PF02637 GatB domain CB4_04087 PF02934 GatB/GatE catalytic domain CB4_04088 PF01425 Amidase CB4_04089 PF02686 Glu-tRNAGln amidotransferase C subunit CB4_04090 PF00990 GGDEF domain CB4_04090 PF07694 5TMR of 5TMR-LYT CB4_04091 PF01381 Helix-turn-helix CB4_04091 PF07883 Cupin domain CB4_04092 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CB4_04093 PF07681 CB4_04093 CB4_04098 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_04098 PF00672 HAMP domain CB4_04099 PF07228 Stage II sporulation protein E (SpoIIE) CB4_04100 PF01740 STAS domain CB4_04101 PF13581 Histidine kinase-like ATPase domain CB4_04102 PF00533 BRCA1 C Terminus (BRCT) domain CB4_04102 PF01653 NAD-dependent DNA ligase adenylation domain CB4_04102 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CB4_04102 PF03120 NAD-dependent DNA ligase OB-fold domain CB4_04102 PF12826 Helix-hairpin-helix motif CB4_04102 PF14520 Helix-hairpin-helix domain CB4_04103 PF00580 UvrD/REP helicase N-terminal domain CB4_04103 PF13361 UvrD-like helicase C-terminal domain CB4_04104 PF01884 PcrB family CB4_04105 PF01371 Trp repressor protein CB4_04106 PF11258 Protein of unknown function (DUF3048) CB4_04106 PF17479 CB4_04106 CB4_04107 PF00255 Glutathione peroxidase CB4_04108 PF07690 Major Facilitator Superfamily CB4_04109 PF07690 Major Facilitator Superfamily CB4_04110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CB4_04110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CB4_04111 PF00005 ABC transporter CB4_04112 PF00005 ABC transporter CB4_04112 PF12399 Branched-chain amino acid ATP-binding cassette transporter CB4_04113 PF02653 CB4_04113 CB4_04114 PF02653 CB4_04114 CB4_04115 PF13458 Periplasmic binding protein CB4_04116 PF11127 Protein of unknown function (DUF2892) CB4_04117 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CB4_04117 PF02843 Phosphoribosylglycinamide synthetase, C domain CB4_04117 PF02844 Phosphoribosylglycinamide synthetase, N domain CB4_04118 PF01808 AICARFT/IMPCHase bienzyme CB4_04118 PF02142 MGS-like domain CB4_04119 PF00551 Formyl transferase CB4_04120 PF00586 AIR synthase related protein, N-terminal domain CB4_04120 PF02769 AIR synthase related protein, C-terminal domain CB4_04121 PF13522 Glutamine amidotransferase domain CB4_04122 PF00586 AIR synthase related protein, N-terminal domain CB4_04122 PF02769 AIR synthase related protein, C-terminal domain CB4_04123 PF13507 CobB/CobQ-like glutamine amidotransferase domain CB4_04124 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CB4_04125 PF01259 SAICAR synthetase CB4_04126 PF00206 Lyase CB4_04126 PF10397 Adenylosuccinate lyase C-terminus CB4_04127 PF02222 ATP-grasp domain CB4_04128 PF00731 AIR carboxylase CB4_04130 PF00072 Response regulator receiver domain CB4_04130 PF13487 HD domain CB4_04131 PF00512 His Kinase A (phospho-acceptor) domain CB4_04131 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_04132 PF00860 Permease family CB4_04133 PF00117 Glutamine amidotransferase class-I CB4_04133 PF00958 GMP synthase C terminal domain CB4_04133 PF02540 NAD synthase CB4_04134 PF00118 TCP-1/cpn60 chaperonin family CB4_04135 PF00166 Chaperonin 10 Kd subunit CB4_04136 PF00375 Sodium:dicarboxylate symporter family CB4_04137 PF00994 Probable molybdopterin binding domain CB4_04138 PF01812 5-formyltetrahydrofolate cyclo-ligase family CB4_04139 PF00005 ABC transporter CB4_04140 PF00005 ABC transporter CB4_04140 PF12848 ABC transporter CB4_04140 PF16326 CB4_04140 CB4_04142 PF00814 Glycoprotease family CB4_04143 PF00672 HAMP domain CB4_04143 PF02743 Cache domain CB4_04144 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_04145 PF00583 Acetyltransferase (GNAT) family CB4_04146 PF00814 Glycoprotease family CB4_04147 PF02367 Uncharacterised P-loop hydrolase UPF0079 CB4_04148 PF00586 AIR synthase related protein, N-terminal domain CB4_04148 PF02769 AIR synthase related protein, C-terminal domain CB4_04149 PF10263 CB4_04149 CB4_04152 PF00575 S1 RNA binding domain CB4_04152 PF09371 Tex-like protein N-terminal domain CB4_04152 PF12836 Helix-hairpin-helix motif CB4_04152 PF16921 CB4_04152 CB4_04153 PF02452 PemK-like protein CB4_04154 PF01402 Ribbon-helix-helix protein, copG family CB4_04155 PF00842 Alanine racemase, C-terminal domain CB4_04155 PF01168 Alanine racemase, N-terminal domain CB4_04175 PF14285 CB4_04175 CB4_04176 PF01256 Carbohydrate kinase CB4_04176 PF03853 YjeF-related protein N-terminus CB4_04177 PF01648 4'-phosphopantetheinyl transferase superfamily CB4_04178 PF01520 N-acetylmuramoyl-L-alanine amidase CB4_04178 PF07833 Copper amine oxidase N-terminal domain CB4_04178 PF11741 AMIN domain CB4_04179 PF00691 OmpA family CB4_04179 PF13677 CB4_04179 CB4_04180 PF01618 CB4_04180 CB4_04181 PF03070 TENA/THI-4/PQQC family CB4_04182 PF03816 Cell envelope-related transcriptional attenuator domain CB4_04184 PF03706 CB4_04184 CB4_04185 PF00535 Glycosyl transferase family 2 CB4_04186 PF13533 Biotin-lipoyl like CB4_04186 PF16576 CB4_04186 CB4_04187 PF00873 AcrB/AcrD/AcrF family CB4_04188 PF02683 CB4_04188 CB4_04189 PF07228 Stage II sporulation protein E (SpoIIE) CB4_04189 PF13426 PAS domain CB4_04190 PF01740 STAS domain CB4_04191 PF13581 Histidine kinase-like ATPase domain CB4_04192 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CB4_04192 PF12729 CB4_04192 CB4_04193 PF01584 CheW-like domain CB4_04193 PF01627 Hpt domain CB4_04193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CB4_04193 PF02895 Signal transducing histidine kinase, homodimeric domain CB4_04193 PF07194 P2 response regulator binding domain CB4_04194 PF01584 CheW-like domain CB4_04195 PF02082 Transcriptional regulator CB4_04196 PF13460 NADH(P)-binding CB4_04197 PF01546 Peptidase family M20/M25/M40 CB4_04197 PF07687 Peptidase dimerisation domain CB4_04198 PF00202 Aminotransferase class-III CB4_04199 PF13527 Acetyltransferase (GNAT) domain