locus-tag class description AF2641_00005 PF13361 UvrD-like helicase C-terminal domain AF2641_00005 PF12705 PD-(D/E)XK nuclease superfamily AF2641_00040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_00040 PF00672 HAMP domain AF2641_00040 PF02743 Cache domain AF2641_00045 PF00563 EAL domain AF2641_00045 PF00990 Diguanylate cyclase, GGDEF domain AF2641_00045 PF03707 Bacterial signalling protein N terminal repeat AF2641_00050 PF00005 ABC transporter AF2641_00055 PF02653 Branched-chain amino acid transport system / permease component AF2641_00065 PF00501 AMP-binding enzyme AF2641_00065 PF13193 AMP-binding enzyme C-terminal domain AF2641_00120 PF05593 RHS Repeat AF2641_00135 PF05593 RHS Repeat AF2641_00145 PF05593 RHS Repeat AF2641_00180 PF00474 Sodium:solute symporter family AF2641_00195 PF12706 Beta-lactamase superfamily domain AF2641_00200 PF14149 YhfH-like protein AF2641_00210 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_00215 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_00215 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_00220 PF01547 Bacterial extracellular solute-binding protein AF2641_00225 PF00356 Bacterial regulatory proteins, lacI family AF2641_00235 PF00440 Bacterial regulatory proteins, tetR family AF2641_00235 PF17932 Tetracyclin repressor-like, C-terminal domain AF2641_00250 PF01208 Uroporphyrinogen decarboxylase (URO-D) AF2641_00255 PF03992 Antibiotic biosynthesis monooxygenase AF2641_00260 PF00581 Rhodanese-like domain AF2641_00265 PF07687 Peptidase dimerisation domain AF2641_00265 PF01546 Peptidase family M20/M25/M40 AF2641_00275 PF00005 ABC transporter AF2641_00280 PF01230 HIT domain AF2641_00285 PF05698 Bacterial trigger factor protein (TF) C-terminus AF2641_00290 PF09680 Family of unknown function AF2641_00305 PF01047 MarR family AF2641_00320 PF17099 Tryptophan transporter TrpP AF2641_00325 PF00266 Aminotransferase class-V AF2641_00330 PF14147 Sporulation protein YhaL AF2641_00335 PF14120 YhzD-like protein AF2641_00340 PF04055 Radical SAM superfamily AF2641_00350 PF06133 Control of competence regulator ComK, YlbF/YmcA AF2641_00355 PF04286 Protein of unknown function (DUF445) AF2641_00365 PF13556 PucR C-terminal helix-turn-helix domain AF2641_00370 PF03459 TOBE domain AF2641_00370 PF00005 ABC transporter AF2641_00370 PF17912 MalK OB fold domain AF2641_00380 PF00269 Small, acid-soluble spore proteins, alpha/beta type AF2641_00385 PF00005 ABC transporter AF2641_00390 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_00395 PF00497 Bacterial extracellular solute-binding proteins, family 3 AF2641_00400 PF00571 CBS domain AF2641_00400 PF01595 Cyclin M transmembrane N-terminal domain AF2641_00400 PF03471 Transporter associated domain AF2641_00405 PF08543 Phosphomethylpyrimidine kinase AF2641_00410 PF00899 ThiF family AF2641_00415 PF05690 Thiazole biosynthesis protein ThiG AF2641_00420 PF02597 ThiS family AF2641_00420 PF05690 Thiazole biosynthesis protein ThiG AF2641_00425 PF01266 FAD dependent oxidoreductase AF2641_00430 PF02581 Thiamine monophosphate synthase AF2641_00435 PF02361 Cobalt transport protein AF2641_00440 PF00005 ABC transporter AF2641_00445 PF09819 ABC-type cobalt transport system, permease component AF2641_00450 PF03070 TENA/THI-4/PQQC family AF2641_00455 PF10672 S-adenosylmethionine-dependent methyltransferase AF2641_00455 PF17785 PUA-like domain AF2641_00465 PF00128 Alpha amylase, catalytic domain AF2641_00465 PF16657 Maltogenic Amylase, C-terminal domain AF2641_00470 PF07690 Major Facilitator Superfamily AF2641_00475 PF01047 MarR family AF2641_00480 PF04293 SpoVR like protein AF2641_00485 PF01145 SPFH domain / Band 7 family AF2641_00485 PF12221 Bacterial membrane protein N terminal AF2641_00490 PF01145 SPFH domain / Band 7 family AF2641_00495 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AF2641_00495 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AF2641_00500 PF14148 YhdB-like protein AF2641_00505 PF00106 short chain dehydrogenase AF2641_00510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AF2641_00510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AF2641_00510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AF2641_00510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AF2641_00515 PF00571 CBS domain AF2641_00520 PF02600 Disulfide bond formation protein DsbB AF2641_00525 PF00085 Thioredoxin AF2641_00535 PF01479 S4 domain AF2641_00535 PF00849 RNA pseudouridylate synthase AF2641_00540 PF01595 Cyclin M transmembrane N-terminal domain AF2641_00540 PF03471 Transporter associated domain AF2641_00540 PF00571 CBS domain AF2641_00545 PF04298 Putative neutral zinc metallopeptidase AF2641_00550 PF00581 Rhodanese-like domain AF2641_00550 PF00753 Metallo-beta-lactamase superfamily AF2641_00560 PF01925 Sulfite exporter TauE/SafE AF2641_00565 PF01206 Sulfurtransferase TusA AF2641_00570 PF13686 DsrE/DsrF/DrsH-like family AF2641_00575 PF01206 Sulfurtransferase TusA AF2641_00575 PF00581 Rhodanese-like domain AF2641_00580 PF00581 Rhodanese-like domain AF2641_00585 PF04285 Protein of unknown function (DUF444) AF2641_00590 PF08298 PrkA AAA domain AF2641_00590 PF06798 PrkA serine protein kinase C-terminal domain AF2641_00595 PF00588 SpoU rRNA Methylase family AF2641_00600 PF12671 Putative amidase domain AF2641_00605 PF08331 Domain of unknown function (DUF1730) AF2641_00620 PF00356 Bacterial regulatory proteins, lacI family AF2641_00625 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_00630 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_00635 PF13416 Bacterial extracellular solute-binding protein AF2641_00740 PF14540 Nucleotidyltransferase-like AF2641_00740 PF18576 Helix-turn-helix domain AF2641_00745 PF11023 Zinc-ribbon containing domain AF2641_00750 PF01475 Ferric uptake regulator family AF2641_00755 PF00578 AhpC/TSA family AF2641_00760 PF07885 Ion channel AF2641_00770 PF00005 ABC transporter AF2641_00775 PF00202 Aminotransferase class-III AF2641_00780 PF01493 GXGXG motif AF2641_00780 PF01645 Conserved region in glutamate synthase AF2641_00780 PF04898 Glutamate synthase central domain AF2641_00780 PF00310 Glutamine amidotransferases class-II AF2641_00785 PF06081 Aromatic acid exporter family member 1 AF2641_00800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AF2641_00805 PF00005 ABC transporter AF2641_00805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AF2641_00810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AF2641_00810 PF00005 ABC transporter AF2641_00815 PF04167 Protein of unknown function (DUF402) AF2641_00830 PF00633 Helix-hairpin-helix motif AF2641_00830 PF14815 NUDIX domain AF2641_00830 PF00730 HhH-GPD superfamily base excision DNA repair protein AF2641_00835 PF04307 LexA-binding, inner membrane-associated putative hydrolase AF2641_00840 PF08176 Small acid-soluble spore protein K family AF2641_00850 PF08838 Protein of unknown function (DUF1811) AF2641_00855 PF02652 L-lactate permease AF2641_00860 PF00106 short chain dehydrogenase AF2641_00865 PF02631 RecX family AF2641_00870 PF01370 NAD dependent epimerase/dehydratase family AF2641_00870 PF08338 Domain of unknown function (DUF1731) AF2641_00875 PF01979 Amidohydrolase family AF2641_00895 PF12729 Four helix bundle sensory module for signal transduction AF2641_00895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_00895 PF00672 HAMP domain AF2641_00900 PF08240 Alcohol dehydrogenase GroES-like domain AF2641_00900 PF00107 Zinc-binding dehydrogenase AF2641_00925 PF14398 YheC/D like ATP-grasp AF2641_00930 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AF2641_00945 PF01938 TRAM domain AF2641_00945 PF05958 tRNA (Uracil-5-)-methyltransferase AF2641_00950 PF00730 HhH-GPD superfamily base excision DNA repair protein AF2641_00955 PF01522 Polysaccharide deacetylase AF2641_00960 PF05683 Fumarase C-terminus AF2641_00960 PF05681 Fumarate hydratase (Fumerase) AF2641_00970 PF08756 YfkB-like domain AF2641_00970 PF04055 Radical SAM superfamily AF2641_00975 PF14167 YfkD-like protein AF2641_00980 PF01699 Sodium/calcium exchanger protein AF2641_00985 PF07690 Major Facilitator Superfamily AF2641_00995 PF03631 Virulence factor BrkB AF2641_01005 PF01451 Low molecular weight phosphotyrosine protein phosphatase AF2641_01010 PF06569 Protein of unknown function (DUF1128) AF2641_01020 PF01507 Phosphoadenosine phosphosulfate reductase family AF2641_01025 PF01384 Phosphate transporter family AF2641_01030 PF01747 ATP-sulfurylase AF2641_01030 PF14306 PUA-like domain AF2641_01040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AF2641_01045 PF01903 CbiX AF2641_01060 PF00708 Acylphosphatase AF2641_01070 PF07664 Ferrous iron transport protein B C terminus AF2641_01070 PF07670 Nucleoside recognition AF2641_01070 PF17910 FeoB cytosolic helical domain AF2641_01070 PF02421 Ferrous iron transport protein B AF2641_01085 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF2641_01085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AF2641_01090 PF03741 Integral membrane protein TerC family AF2641_01095 PF01476 LysM domain AF2641_01095 PF00877 NlpC/P60 family AF2641_01100 PF03707 Bacterial signalling protein N terminal repeat AF2641_01100 PF00563 EAL domain AF2641_01100 PF00990 Diguanylate cyclase, GGDEF domain AF2641_01105 PF02743 Cache domain AF2641_01105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_01105 PF00672 HAMP domain AF2641_01110 PF02898 Nitric oxide synthase, oxygenase domain AF2641_01125 PF04542 Sigma-70 region 2 AF2641_01125 PF08281 Sigma-70, region 4 AF2641_01145 PF00512 His Kinase A (phospho-acceptor) domain AF2641_01145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_01145 PF00989 PAS fold AF2641_01145 PF16736 Single Cache-like AF2641_01150 PF00486 Transcriptional regulatory protein, C terminal AF2641_01150 PF00072 Response regulator receiver domain AF2641_01155 PF01061 ABC-2 type transporter AF2641_01160 PF00005 ABC transporter AF2641_01160 PF13732 Domain of unknown function (DUF4162) AF2641_01180 PF08447 PAS fold AF2641_01180 PF13426 PAS domain AF2641_01180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_01190 PF07690 Major Facilitator Superfamily AF2641_01195 PF02475 Met-10+ like-protein AF2641_01195 PF01938 TRAM domain AF2641_01195 PF05958 tRNA (Uracil-5-)-methyltransferase AF2641_01200 PF00781 Diacylglycerol kinase catalytic domain AF2641_01215 PF00486 Transcriptional regulatory protein, C terminal AF2641_01215 PF00072 Response regulator receiver domain AF2641_01220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_01220 PF00672 HAMP domain AF2641_01220 PF18698 Histidine kinase sensor domain AF2641_01220 PF00989 PAS fold AF2641_01220 PF00512 His Kinase A (phospho-acceptor) domain AF2641_01230 PF04012 PspA/IM30 family AF2641_01245 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AF2641_01250 PF00510 Cytochrome c oxidase subunit III AF2641_01255 PF00115 Cytochrome C and Quinol oxidase polypeptide I AF2641_01260 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AF2641_01265 PF00171 Aldehyde dehydrogenase family AF2641_01315 PF01609 Transposase DDE domain AF2641_01325 PF03591 AzlC protein AF2641_01335 PF00486 Transcriptional regulatory protein, C terminal AF2641_01335 PF00072 Response regulator receiver domain AF2641_01345 PF02934 GatB/GatE catalytic domain AF2641_01345 PF02637 GatB domain AF2641_01350 PF01425 Amidase AF2641_01355 PF02686 Glu-tRNAGln amidotransferase C subunit AF2641_01365 PF13382 Adenine deaminase C-terminal domain AF2641_01365 PF01979 Amidohydrolase family AF2641_01400 PF00171 Aldehyde dehydrogenase family AF2641_01405 PF07537 CamS sex pheromone cAM373 precursor AF2641_01410 PF00533 BRCA1 C Terminus (BRCT) domain AF2641_01410 PF03120 NAD-dependent DNA ligase OB-fold domain AF2641_01410 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AF2641_01410 PF01653 NAD-dependent DNA ligase adenylation domain AF2641_01410 PF12826 Helix-hairpin-helix motif AF2641_01415 PF00580 UvrD/REP helicase N-terminal domain AF2641_01415 PF13361 UvrD-like helicase C-terminal domain AF2641_01420 PF01884 PcrB family AF2641_01425 PF01371 Trp repressor protein AF2641_01430 PF17479 Protein of unknown function (DUF3048) C-terminal domain AF2641_01430 PF11258 Protein of unknown function (DUF3048) N-terminal domain AF2641_01435 PF13382 Adenine deaminase C-terminal domain AF2641_01435 PF01979 Amidohydrolase family AF2641_01445 PF02843 Phosphoribosylglycinamide synthetase, C domain AF2641_01445 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AF2641_01445 PF02844 Phosphoribosylglycinamide synthetase, N domain AF2641_01450 PF01808 AICARFT/IMPCHase bienzyme AF2641_01450 PF02142 MGS-like domain AF2641_01455 PF00551 Formyl transferase AF2641_01460 PF00586 AIR synthase related protein, N-terminal domain AF2641_01460 PF02769 AIR synthase related protein, C-terminal domain AF2641_01465 PF00156 Phosphoribosyl transferase domain AF2641_01480 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AF2641_01485 PF01259 SAICAR synthetase AF2641_01490 PF00206 Lyase AF2641_01490 PF10397 Adenylosuccinate lyase C-terminus AF2641_01495 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AF2641_01495 PF02222 ATP-grasp domain AF2641_01500 PF00731 AIR carboxylase AF2641_01505 PF00011 Hsp20/alpha crystallin family AF2641_01525 PF00860 Permease family AF2641_01530 PF00958 GMP synthase C terminal domain AF2641_01530 PF02540 NAD synthase AF2641_01530 PF00117 Glutamine amidotransferase class-I AF2641_01540 PF00206 Lyase AF2641_01540 PF00583 Acetyltransferase (GNAT) family AF2641_01540 PF14698 Argininosuccinate lyase C-terminal AF2641_01545 PF07690 Major Facilitator Superfamily AF2641_01555 PF00205 Thiamine pyrophosphate enzyme, central domain AF2641_01555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF2641_01555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AF2641_01570 PF02844 Phosphoribosylglycinamide synthetase, N domain AF2641_01570 PF02843 Phosphoribosylglycinamide synthetase, C domain AF2641_01570 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AF2641_01575 PF01960 ArgJ family AF2641_01585 PF01609 Transposase DDE domain AF2641_01595 PF00118 TCP-1/cpn60 chaperonin family AF2641_01600 PF00166 Chaperonin 10 Kd subunit AF2641_01605 PF02517 CPBP intramembrane metalloprotease AF2641_01615 PF02629 CoA binding domain AF2641_01615 PF06971 Putative DNA-binding protein N-terminus AF2641_01620 PF16326 ABC transporter C-terminal domain AF2641_01620 PF12848 ABC transporter AF2641_01620 PF00005 ABC transporter AF2641_01630 PF00814 Glycoprotease family AF2641_01635 PF00583 Acetyltransferase (GNAT) family AF2641_01640 PF00814 Glycoprotease family AF2641_01645 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AF2641_01690 PF05698 Bacterial trigger factor protein (TF) C-terminus AF2641_01690 PF05697 Bacterial trigger factor protein (TF) AF2641_01730 PF10263 SprT-like family AF2641_01740 PF17674 HHH domain AF2641_01740 PF00575 S1 RNA binding domain AF2641_01740 PF09371 Tex-like protein N-terminal domain AF2641_01740 PF16921 Tex protein YqgF-like domain AF2641_01745 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AF2641_01750 PF01402 Ribbon-helix-helix protein, copG family AF2641_01755 PF00842 Alanine racemase, C-terminal domain AF2641_01755 PF01168 Alanine racemase, N-terminal domain AF2641_01765 PF01648 4'-phosphopantetheinyl transferase superfamily AF2641_01770 PF00270 DEAD/DEAH box helicase AF2641_01770 PF00271 Helicase conserved C-terminal domain AF2641_01775 PF08245 Mur ligase middle domain AF2641_01775 PF02875 Mur ligase family, glutamate ligase domain AF2641_01775 PF01225 Mur ligase family, catalytic domain AF2641_01780 PF07478 D-ala D-ala ligase C-terminus AF2641_01780 PF01820 D-ala D-ala ligase N-terminus AF2641_01785 PF03845 Spore germination protein AF2641_01790 PF03323 Bacillus/Clostridium GerA spore germination protein AF2641_01800 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AF2641_01810 PF01522 Polysaccharide deacetylase AF2641_01810 PF13739 Deacetylase PdaC AF2641_01810 PF11738 Protein of unknown function (DUF3298) AF2641_01815 PF01039 Carboxyl transferase domain AF2641_01820 PF00378 Enoyl-CoA hydratase/isomerase AF2641_01825 PF00682 HMGL-like AF2641_01830 PF00364 Biotin-requiring enzyme AF2641_01835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AF2641_01835 PF00289 Biotin carboxylase, N-terminal domain AF2641_01835 PF02785 Biotin carboxylase C-terminal domain AF2641_01840 PF00501 AMP-binding enzyme AF2641_01840 PF13193 AMP-binding enzyme C-terminal domain AF2641_01845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF2641_01845 PF02770 Acyl-CoA dehydrogenase, middle domain AF2641_01845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF2641_01870 PF07739 TipAS antibiotic-recognition domain AF2641_01870 PF13411 MerR HTH family regulatory protein AF2641_01875 PF00072 Response regulator receiver domain AF2641_01875 PF00196 Bacterial regulatory proteins, luxR family AF2641_01880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_01880 PF07730 Histidine kinase AF2641_01905 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AF2641_01940 PF01553 Acyltransferase AF2641_01950 PF07690 Major Facilitator Superfamily AF2641_01955 PF13537 Glutamine amidotransferase domain AF2641_01955 PF00733 Asparagine synthase AF2641_02025 PF13358 DDE superfamily endonuclease AF2641_02040 PF13358 DDE superfamily endonuclease AF2641_02045 PF01380 SIS domain AF2641_02050 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AF2641_02050 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AF2641_02050 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AF2641_02050 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AF2641_02055 PF07949 YbbR-like protein AF2641_02060 PF02457 DisA bacterial checkpoint controller nucleotide-binding AF2641_02065 PF13490 Putative zinc-finger AF2641_02070 PF04542 Sigma-70 region 2 AF2641_02070 PF08281 Sigma-70, region 4 AF2641_02075 PF00491 Arginase family AF2641_02145 PF01522 Polysaccharide deacetylase AF2641_02150 PF14089 KinB-signalling pathway activation in sporulation AF2641_02155 PF17898 Spore germination GerD central core domain AF2641_02160 PF10609 NUBPL iron-transfer P-loop NTPase AF2641_02165 PF01520 N-acetylmuramoyl-L-alanine amidase AF2641_02175 PF00380 Ribosomal protein S9/S16 AF2641_02180 PF00572 Ribosomal protein L13 AF2641_02185 PF01416 tRNA pseudouridine synthase AF2641_02190 PF02361 Cobalt transport protein AF2641_02195 PF00005 ABC transporter AF2641_02200 PF00005 ABC transporter AF2641_02205 PF01196 Ribosomal protein L17 AF2641_02210 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AF2641_02210 PF01000 RNA polymerase Rpb3/RpoA insert domain AF2641_02210 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AF2641_02215 PF00411 Ribosomal protein S11 AF2641_02220 PF00416 Ribosomal protein S13/S18 AF2641_02225 PF00444 Ribosomal protein L36 AF2641_02230 PF01176 Translation initiation factor 1A / IF-1 AF2641_02235 PF00557 Metallopeptidase family M24 AF2641_02240 PF05191 Adenylate kinase, active site lid AF2641_02245 PF00344 SecY translocase AF2641_02250 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AF2641_02255 PF00327 Ribosomal protein L30p/L7e AF2641_02260 PF03719 Ribosomal protein S5, C-terminal domain AF2641_02260 PF00333 Ribosomal protein S5, N-terminal domain AF2641_02265 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AF2641_02270 PF00347 Ribosomal protein L6 AF2641_02275 PF00410 Ribosomal protein S8 AF2641_02280 PF00253 Ribosomal protein S14p/S29e AF2641_02285 PF00673 ribosomal L5P family C-terminus AF2641_02285 PF00281 Ribosomal protein L5 AF2641_02290 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AF2641_02290 PF00467 KOW motif AF2641_02295 PF00238 Ribosomal protein L14p/L23e AF2641_02300 PF00366 Ribosomal protein S17 AF2641_02305 PF00831 Ribosomal L29 protein AF2641_02310 PF00252 Ribosomal protein L16p/L10e AF2641_02315 PF00189 Ribosomal protein S3, C-terminal domain AF2641_02315 PF07650 KH domain AF2641_02320 PF00237 Ribosomal protein L22p/L17e AF2641_02325 PF00203 Ribosomal protein S19 AF2641_02330 PF00181 Ribosomal Proteins L2, RNA binding domain AF2641_02330 PF03947 Ribosomal Proteins L2, C-terminal domain AF2641_02335 PF00276 Ribosomal protein L23 AF2641_02340 PF00573 Ribosomal protein L4/L1 family AF2641_02345 PF00297 Ribosomal protein L3 AF2641_02350 PF00338 Ribosomal protein S10p/S20e AF2641_02360 PF03143 Elongation factor Tu C-terminal domain AF2641_02360 PF00009 Elongation factor Tu GTP binding domain AF2641_02360 PF03144 Elongation factor Tu domain 2 AF2641_02365 PF03144 Elongation factor Tu domain 2 AF2641_02365 PF00009 Elongation factor Tu GTP binding domain AF2641_02365 PF03764 Elongation factor G, domain IV AF2641_02365 PF14492 Elongation Factor G, domain II AF2641_02365 PF00679 Elongation factor G C-terminus AF2641_02370 PF00177 Ribosomal protein S7p/S5e AF2641_02375 PF00164 Ribosomal protein S12/S23 AF2641_02380 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AF2641_02385 PF04997 RNA polymerase Rpb1, domain 1 AF2641_02385 PF00623 RNA polymerase Rpb1, domain 2 AF2641_02385 PF04983 RNA polymerase Rpb1, domain 3 AF2641_02385 PF04998 RNA polymerase Rpb1, domain 5 AF2641_02385 PF05000 RNA polymerase Rpb1, domain 4 AF2641_02390 PF04560 RNA polymerase Rpb2, domain 7 AF2641_02390 PF04563 RNA polymerase beta subunit AF2641_02390 PF04561 RNA polymerase Rpb2, domain 2 AF2641_02390 PF04565 RNA polymerase Rpb2, domain 3 AF2641_02390 PF10385 RNA polymerase beta subunit external 1 domain AF2641_02390 PF00562 RNA polymerase Rpb2, domain 6 AF2641_02395 PF05175 Methyltransferase small domain AF2641_02400 PF16320 Ribosomal protein L7/L12 dimerisation domain AF2641_02400 PF00542 Ribosomal protein L7/L12 C-terminal domain AF2641_02405 PF00466 Ribosomal protein L10 AF2641_02410 PF00687 Ribosomal protein L1p/L10e family AF2641_02415 PF03946 Ribosomal protein L11, N-terminal domain AF2641_02415 PF00298 Ribosomal protein L11, RNA binding domain AF2641_02420 PF00467 KOW motif AF2641_02420 PF02357 Transcription termination factor nusG AF2641_02425 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AF2641_02430 PF00471 Ribosomal protein L33 AF2641_02435 PF08281 Sigma-70, region 4 AF2641_02435 PF04542 Sigma-70 region 2 AF2641_02440 PF05991 YacP-like NYN domain AF2641_02445 PF00588 SpoU rRNA Methylase family AF2641_02445 PF08032 RNA 2'-O ribose methyltransferase substrate binding AF2641_02450 PF00636 Ribonuclease III domain AF2641_02455 PF09190 DALR domain AF2641_02455 PF01406 tRNA synthetases class I (C) catalytic domain AF2641_02460 PF06426 Serine acetyltransferase, N-terminal AF2641_02460 PF00132 Bacterial transferase hexapeptide (six repeats) AF2641_02465 PF00749 tRNA synthetases class I (E and Q), catalytic domain AF2641_02470 PF02542 YgbB family AF2641_02475 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AF2641_02485 PF18073 Rubredoxin metal binding domain AF2641_02490 PF10431 C-terminal, D2-small domain, of ClpB protein AF2641_02490 PF02861 Clp amino terminal domain, pathogenicity island component AF2641_02490 PF00004 ATPase family associated with various cellular activities (AAA) AF2641_02490 PF07724 AAA domain (Cdc48 subfamily) AF2641_02490 PF17871 AAA lid domain AF2641_02495 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain AF2641_02500 PF02151 UvrB/uvrC motif AF2641_02505 PF05848 CtsR N-terminal HTH domain AF2641_02505 PF17727 CtsR C-terminal dimerization domain AF2641_02550 PF05698 Bacterial trigger factor protein (TF) C-terminus AF2641_02550 PF05697 Bacterial trigger factor protein (TF) AF2641_02575 PF00152 tRNA synthetases class II (D, K and N) AF2641_02575 PF01336 OB-fold nucleic acid binding domain AF2641_02580 PF01207 Dihydrouridine synthase (Dus) AF2641_02585 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AF2641_02590 PF02152 Dihydroneopterin aldolase AF2641_02595 PF00809 Pterin binding enzyme AF2641_02600 PF01063 Amino-transferase class IV AF2641_02605 PF00117 Glutamine amidotransferase class-I AF2641_02610 PF04715 Anthranilate synthase component I, N terminal region AF2641_02610 PF00425 chorismate binding enzyme AF2641_02615 PF00291 Pyridoxal-phosphate dependent enzyme AF2641_02620 PF01430 Hsp33 protein AF2641_02625 PF03309 Type III pantothenate kinase AF2641_02630 PF17862 AAA+ lid domain AF2641_02630 PF01434 Peptidase family M41 AF2641_02630 PF06480 FtsH Extracellular AF2641_02630 PF00004 ATPase family associated with various cellular activities (AAA) AF2641_02640 PF01171 PP-loop family AF2641_02640 PF11734 TilS substrate C-terminal domain AF2641_02640 PF09179 TilS substrate binding domain AF2641_02645 PF00069 Protein kinase domain AF2641_02650 PF00092 von Willebrand factor type A domain AF2641_02655 PF07228 Stage II sporulation protein E (SpoIIE) AF2641_02670 PF00575 S1 RNA binding domain AF2641_02680 PF09578 Spore cortex protein YabQ (Spore_YabQ) AF2641_02685 PF07873 YabP family AF2641_02690 PF01479 S4 domain AF2641_02695 PF03819 MazG nucleotide pyrophosphohydrolase domain AF2641_02695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AF2641_02700 PF01943 Polysaccharide biosynthesis protein AF2641_02700 PF14667 Polysaccharide biosynthesis C-terminal domain AF2641_02705 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AF2641_02705 PF15714 Stage V sporulation protein T C-terminal, transcription factor AF2641_02710 PF02559 CarD-like/TRCF domain AF2641_02710 PF00270 DEAD/DEAH box helicase AF2641_02710 PF00271 Helicase conserved C-terminal domain AF2641_02710 PF03461 TRCF domain AF2641_02710 PF17757 UvrB interaction domain AF2641_02715 PF10955 Protein of unknown function (DUF2757) AF2641_02720 PF01195 Peptidyl-tRNA hydrolase AF2641_02725 PF01386 Ribosomal L25p family AF2641_02725 PF14693 Ribosomal protein TL5, C-terminal domain AF2641_02730 PF14572 Phosphoribosyl synthetase-associated domain AF2641_02730 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AF2641_02735 PF00483 Nucleotidyl transferase AF2641_02735 PF00132 Bacterial transferase hexapeptide (six repeats) AF2641_02740 PF04026 SpoVG AF2641_02745 PF01042 Endoribonuclease L-PSP AF2641_02750 PF00156 Phosphoribosyl transferase domain AF2641_02750 PF09182 Bacterial purine repressor, N-terminal AF2641_02755 PF00288 GHMP kinases N terminal domain AF2641_02755 PF08544 GHMP kinases C terminal AF2641_02760 PF06257 Biofilm formation stimulator VEG AF2641_02765 PF05582 YabG peptidase U57 AF2641_02770 PF00398 Ribosomal RNA adenine dimethylase AF2641_02775 PF13331 Domain of unknown function (DUF4093) AF2641_02775 PF13662 Toprim domain AF2641_02785 PF01609 Transposase DDE domain AF2641_02795 PF01026 TatD related DNase AF2641_02800 PF08264 Anticodon-binding domain of tRNA AF2641_02800 PF09334 tRNA synthetases class I (M) AF2641_02800 PF01588 Putative tRNA binding domain AF2641_02805 PF18277 AbrB C-terminal domain AF2641_02805 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AF2641_02810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AF2641_02815 PF05175 Methyltransferase small domain AF2641_02820 PF06156 Initiation control protein YabA AF2641_02825 PF04468 PSP1 C-terminal conserved region AF2641_02830 PF09115 DNA polymerase III, delta subunit, C terminal AF2641_02835 PF02223 Thymidylate kinase AF2641_02840 PF01276 Orn/Lys/Arg decarboxylase, major domain AF2641_02840 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AF2641_02845 PF10764 Inhibitor of sigma-G Gin AF2641_02875 PF07441 SigmaK-factor processing regulatory protein BofA AF2641_02880 PF10704 Protein of unknown function (DUF2508) AF2641_02885 PF13662 Toprim domain AF2641_02885 PF02132 RecR protein AF2641_02890 PF02575 YbaB/EbfC DNA-binding family AF2641_02895 PF12169 DNA polymerase III subunits gamma and tau domain III AF2641_02905 PF14437 MafB19-like deaminase AF2641_02910 PF01712 Deoxynucleoside kinase AF2641_02915 PF01712 Deoxynucleoside kinase AF2641_02925 PF02403 Seryl-tRNA synthetase N-terminal domain AF2641_02925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AF2641_02930 PF01174 SNO glutamine amidotransferase family AF2641_02935 PF01680 SOR/SNZ family AF2641_02940 PF00768 D-alanyl-D-alanine carboxypeptidase AF2641_02940 PF07943 Penicillin-binding protein 5, C-terminal domain AF2641_02945 PF00571 CBS domain AF2641_02945 PF00478 IMP dehydrogenase / GMP reductase domain AF2641_02950 PF14175 YaaC-like Protein AF2641_02980 PF00072 Response regulator receiver domain AF2641_02985 PF03989 DNA gyrase C-terminal domain, beta-propeller AF2641_02985 PF00521 DNA gyrase/topoisomerase IV, subunit A AF2641_02990 PF00986 DNA gyrase B subunit, carboxyl terminus AF2641_02990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_02990 PF01751 Toprim domain AF2641_02990 PF00204 DNA gyrase B AF2641_02995 PF02463 RecF/RecN/SMC N terminal domain AF2641_03005 PF00712 DNA polymerase III beta subunit, N-terminal domain AF2641_03005 PF02767 DNA polymerase III beta subunit, central domain AF2641_03005 PF02768 DNA polymerase III beta subunit, C-terminal domain AF2641_03010 PF08299 Bacterial dnaA protein helix-turn-helix AF2641_03010 PF11638 DnaA N-terminal domain AF2641_03010 PF00308 Bacterial dnaA protein AF2641_03015 PF00468 Ribosomal protein L34 AF2641_03020 PF00825 Ribonuclease P AF2641_03025 PF02096 60Kd inner membrane protein AF2641_03030 PF14804 Jag N-terminus AF2641_03030 PF01424 R3H domain AF2641_03035 PF01926 50S ribosome-binding GTPase AF2641_03035 PF12631 MnmE helical domain AF2641_03035 PF10396 GTP-binding protein TrmE N-terminus AF2641_03040 PF01134 Glucose inhibited division protein A AF2641_03040 PF13932 GidA associated domain AF2641_03045 PF02527 rRNA small subunit methyltransferase G AF2641_03050 PF02195 ParB-like nuclease domain AF2641_03050 PF17762 HTH domain found in ParB protein AF2641_03055 PF13614 AAA domain AF2641_03060 PF17762 HTH domain found in ParB protein AF2641_03060 PF02195 ParB-like nuclease domain AF2641_03065 PF04474 Protein of unknown function (DUF554) AF2641_03075 PF00924 Mechanosensitive ion channel AF2641_03080 PF06107 Bacterial protein of unknown function (DUF951) AF2641_03085 PF06071 Protein of unknown function (DUF933) AF2641_03085 PF01926 50S ribosome-binding GTPase AF2641_03090 PF01250 Ribosomal protein S6 AF2641_03095 PF00436 Single-strand binding protein family AF2641_03100 PF01084 Ribosomal protein S18 AF2641_03105 PF09991 Predicted membrane protein (DUF2232) AF2641_03110 PF02272 DHHA1 domain AF2641_03110 PF01368 DHH family AF2641_03115 PF03948 Ribosomal protein L9, C-terminal domain AF2641_03115 PF01281 Ribosomal protein L9, N-terminal domain AF2641_03120 PF00772 DnaB-like helicase N terminal domain AF2641_03120 PF03796 DnaB-like helicase C terminal domain AF2641_03125 PF00709 Adenylosuccinate synthetase AF2641_03140 PF00486 Transcriptional regulatory protein, C terminal AF2641_03140 PF00072 Response regulator receiver domain AF2641_03145 PF13426 PAS domain AF2641_03145 PF00512 His Kinase A (phospho-acceptor) domain AF2641_03145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_03145 PF00672 HAMP domain AF2641_03155 PF09648 YycH protein AF2641_03160 PF00753 Metallo-beta-lactamase superfamily AF2641_03165 PF13180 PDZ domain AF2641_03175 PF02590 Predicted SPOUT methyltransferase AF2641_03180 PF00854 POT family AF2641_03185 PF13416 Bacterial extracellular solute-binding protein AF2641_03190 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_03195 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_03200 PF08402 TOBE domain AF2641_03200 PF00005 ABC transporter AF2641_03210 PF03845 Spore germination protein AF2641_03215 PF03323 Bacillus/Clostridium GerA spore germination protein AF2641_03220 PF01266 FAD dependent oxidoreductase AF2641_03220 PF00355 Rieske [2Fe-2S] domain AF2641_03235 PF00465 Iron-containing alcohol dehydrogenase AF2641_03235 PF00171 Aldehyde dehydrogenase family AF2641_03245 PF04073 Aminoacyl-tRNA editing domain AF2641_03250 PF00588 SpoU rRNA Methylase family AF2641_03250 PF12105 SpoU, rRNA methylase, C-terminal AF2641_03255 PF13419 Haloacid dehalogenase-like hydrolase AF2641_03260 PF04055 Radical SAM superfamily AF2641_03265 PF02901 Pyruvate formate lyase-like AF2641_03265 PF01228 Glycine radical AF2641_03270 PF00497 Bacterial extracellular solute-binding proteins, family 3 AF2641_03280 PF00005 ABC transporter AF2641_03285 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AF2641_03285 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AF2641_03290 PF06018 CodY GAF-like domain AF2641_03290 PF17853 GGDEF-like domain AF2641_03290 PF13556 PucR C-terminal helix-turn-helix domain AF2641_03295 PF00294 pfkB family carbohydrate kinase AF2641_03300 PF04198 Putative sugar-binding domain AF2641_03305 PF01773 Na+ dependent nucleoside transporter N-terminus AF2641_03305 PF07662 Na+ dependent nucleoside transporter C-terminus AF2641_03310 PF01791 DeoC/LacD family aldolase AF2641_03320 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AF2641_03330 PF07282 Putative transposase DNA-binding domain AF2641_03330 PF01385 Probable transposase AF2641_03330 PF12323 Helix-turn-helix domain AF2641_03335 PF07690 Major Facilitator Superfamily AF2641_03340 PF00535 Glycosyl transferase family 2 AF2641_03350 PF10417 C-terminal domain of 1-Cys peroxiredoxin AF2641_03350 PF00578 AhpC/TSA family AF2641_03355 PF13192 Thioredoxin domain AF2641_03355 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF2641_03360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AF2641_03360 PF03129 Anticodon binding domain AF2641_03365 PF03167 Uracil DNA glycosylase superfamily AF2641_03375 PF00999 Sodium/hydrogen exchanger family AF2641_03375 PF02254 TrkA-N domain AF2641_03390 PF04241 Protein of unknown function (DUF423) AF2641_03395 PF09671 Spore coat protein (Spore_GerQ) AF2641_03400 PF07486 Cell Wall Hydrolase AF2641_03410 PF09335 SNARE associated Golgi protein AF2641_03415 PF01515 Phosphate acetyl/butaryl transferase AF2641_03420 PF03099 Biotin/lipoate A/B protein ligase family AF2641_03430 PF07293 Protein of unknown function (DUF1450) AF2641_03435 PF01966 HD domain AF2641_03445 PF01361 Tautomerase enzyme AF2641_03450 PF02163 Peptidase family M50 AF2641_03455 PF08741 YwhD family AF2641_03460 PF00905 Penicillin binding protein transpeptidase domain AF2641_03460 PF00912 Transglycosylase AF2641_03465 PF17284 Spermidine synthase tetramerisation domain AF2641_03470 PF00491 Arginase family AF2641_03485 PF05746 DALR anticodon binding domain AF2641_03485 PF00750 tRNA synthetases class I (R) AF2641_03485 PF03485 Arginyl tRNA synthetase N terminal domain AF2641_03490 PF13091 PLD-like domain AF2641_03495 PF02754 Cysteine-rich domain AF2641_03495 PF13183 4Fe-4S dicluster domain AF2641_03500 PF00108 Thiolase, N-terminal domain AF2641_03500 PF02803 Thiolase, C-terminal domain AF2641_03505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF2641_03505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF2641_03510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF2641_03510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF2641_03510 PF02770 Acyl-CoA dehydrogenase, middle domain AF2641_03515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF2641_03515 PF02770 Acyl-CoA dehydrogenase, middle domain AF2641_03515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF2641_03525 PF01642 Methylmalonyl-CoA mutase AF2641_03525 PF02310 B12 binding domain AF2641_03530 PF05066 HB1, ASXL, restriction endonuclease HTH domain AF2641_03535 PF00117 Glutamine amidotransferase class-I AF2641_03535 PF06418 CTP synthase N-terminus AF2641_03540 PF10740 Domain of unknown function (DUF2529) AF2641_03545 PF00072 Response regulator receiver domain AF2641_03550 PF01116 Fructose-bisphosphate aldolase class-II AF2641_03555 PF00923 Transaldolase/Fructose-6-phosphate aldolase AF2641_03560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AF2641_03565 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AF2641_03570 PF07497 Rho termination factor, RNA-binding domain AF2641_03570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AF2641_03570 PF07498 Rho termination factor, N-terminal domain AF2641_03575 PF01197 Ribosomal protein L31 AF2641_03580 PF00265 Thymidine kinase AF2641_03585 PF00472 RF-1 domain AF2641_03585 PF03462 PCRF domain AF2641_03590 PF13847 Methyltransferase domain AF2641_03590 PF17827 PrmC N-terminal domain AF2641_03595 PF09551 Stage II sporulation protein R (spore_II_R) AF2641_03600 PF01300 Telomere recombination AF2641_03600 PF03481 Putative GTP-binding controlling metal-binding AF2641_03605 PF02659 Putative manganese efflux pump AF2641_03610 PF01451 Low molecular weight phosphotyrosine protein phosphatase AF2641_03615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_03615 PF00672 HAMP domain AF2641_03615 PF02743 Cache domain AF2641_03620 PF02502 Ribose/Galactose Isomerase AF2641_03625 PF04260 Protein of unknown function (DUF436) AF2641_03630 PF00464 Serine hydroxymethyltransferase AF2641_03640 PF02350 UDP-N-acetylglucosamine 2-epimerase AF2641_03650 PF03899 ATP synthase I chain AF2641_03655 PF00119 ATP synthase A chain AF2641_03660 PF00137 ATP synthase subunit C AF2641_03665 PF00430 ATP synthase B/B' CF(0) AF2641_03670 PF00213 ATP synthase delta (OSCP) subunit AF2641_03675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AF2641_03675 PF00306 ATP synthase alpha/beta chain, C terminal domain AF2641_03675 PF02874 ATP synthase alpha/beta family, beta-barrel domain AF2641_03680 PF00231 ATP synthase AF2641_03685 PF02874 ATP synthase alpha/beta family, beta-barrel domain AF2641_03685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AF2641_03690 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AF2641_03690 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AF2641_03695 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AF2641_03700 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AF2641_03705 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AF2641_03710 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AF2641_03715 PF00146 NADH dehydrogenase AF2641_03720 PF00037 4Fe-4S binding domain AF2641_03725 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AF2641_03730 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AF2641_03735 PF00361 Proton-conducting membrane transporter AF2641_03735 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AF2641_03735 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AF2641_03740 PF00361 Proton-conducting membrane transporter AF2641_03745 PF00361 Proton-conducting membrane transporter AF2641_03750 PF06612 Protein of unknown function (DUF1146) AF2641_03760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AF2641_03765 PF08486 Stage II sporulation protein AF2641_03770 PF01551 Peptidase family M23 AF2641_03775 PF12116 Stage III sporulation protein D AF2641_03785 PF12323 Helix-turn-helix domain AF2641_03785 PF01385 Probable transposase AF2641_03785 PF07282 Putative transposase DNA-binding domain AF2641_03790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AF2641_03790 PF00460 Flagella basal body rod protein AF2641_03795 PF00460 Flagella basal body rod protein AF2641_03795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AF2641_03805 PF07977 FabA-like domain AF2641_03820 PF02706 Chain length determinant protein AF2641_03820 PF13807 G-rich domain on putative tyrosine kinase AF2641_03825 PF13614 AAA domain AF2641_03840 PF00483 Nucleotidyl transferase AF2641_03845 PF02397 Bacterial sugar transferase AF2641_03850 PF01370 NAD dependent epimerase/dehydratase family AF2641_03855 PF16363 GDP-mannose 4,6 dehydratase AF2641_03865 PF00535 Glycosyl transferase family 2 AF2641_03870 PF00132 Bacterial transferase hexapeptide (six repeats) AF2641_03880 PF00535 Glycosyl transferase family 2 AF2641_03885 PF00132 Bacterial transferase hexapeptide (six repeats) AF2641_03895 PF01609 Transposase DDE domain AF2641_03900 PF00534 Glycosyl transferases group 1 AF2641_03900 PF09318 Glycosyl transferase 1 domain A AF2641_03915 PF13358 DDE superfamily endonuclease AF2641_03920 PF13439 Glycosyltransferase Family 4 AF2641_03920 PF00534 Glycosyl transferases group 1 AF2641_03925 PF03808 Glycosyl transferase WecB/TagA/CpsF family AF2641_03930 PF00483 Nucleotidyl transferase AF2641_03930 PF01050 Mannose-6-phosphate isomerase AF2641_03940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AF2641_03940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AF2641_03940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AF2641_03940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AF2641_03950 PF01238 Phosphomannose isomerase type I AF2641_03955 PF00480 ROK family AF2641_03980 PF00128 Alpha amylase, catalytic domain AF2641_03980 PF09154 Domain of unknown function (DUF1939) AF2641_03990 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AF2641_03990 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AF2641_03990 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AF2641_03995 PF16363 GDP-mannose 4,6 dehydratase AF2641_04000 PF00873 AcrB/AcrD/AcrF family AF2641_04005 PF00271 Helicase conserved C-terminal domain AF2641_04005 PF00176 SNF2 family N-terminal domain AF2641_04005 PF12419 SNF2 Helicase protein AF2641_04015 PF13784 Fic/DOC family N-terminal AF2641_04015 PF02661 Fic/DOC family AF2641_04030 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AF2641_04030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AF2641_04035 PF13509 S1 domain AF2641_04035 PF17783 CvfB-like winged helix domain AF2641_04040 PF05225 helix-turn-helix, Psq domain AF2641_04040 PF02810 SEC-C motif AF2641_04060 PF03808 Glycosyl transferase WecB/TagA/CpsF family AF2641_04065 PF14667 Polysaccharide biosynthesis C-terminal domain AF2641_04065 PF01943 Polysaccharide biosynthesis protein AF2641_04080 PF00672 HAMP domain AF2641_04080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_04080 PF02743 Cache domain AF2641_04085 PF06338 ComK protein AF2641_04095 PF13840 ACT domain AF2641_04095 PF00696 Amino acid kinase family AF2641_04105 PF04203 Sortase domain AF2641_04110 PF14183 YwpF-like protein AF2641_04120 PF01381 Helix-turn-helix AF2641_04135 PF07516 SecA Wing and Scaffold domain AF2641_04135 PF01043 SecA preprotein cross-linking domain AF2641_04135 PF07517 SecA DEAD-like domain AF2641_04145 PF00395 S-layer homology domain AF2641_04150 PF00877 NlpC/P60 family AF2641_04150 PF01476 LysM domain AF2641_04165 PF00128 Alpha amylase, catalytic domain AF2641_04165 PF02903 Alpha amylase, N-terminal ig-like domain AF2641_04165 PF00395 S-layer homology domain AF2641_04170 PF02225 PA domain AF2641_04170 PF00746 LPXTG cell wall anchor motif AF2641_04170 PF06280 Fn3-like domain AF2641_04170 PF00082 Subtilase family AF2641_04175 PF02903 Alpha amylase, N-terminal ig-like domain AF2641_04175 PF00128 Alpha amylase, catalytic domain AF2641_04175 PF00395 S-layer homology domain AF2641_04185 PF07833 Copper amine oxidase N-terminal domain AF2641_04190 PF00149 Calcineurin-like phosphoesterase AF2641_04190 PF02872 5'-nucleotidase, C-terminal domain AF2641_04195 PF00082 Subtilase family AF2641_04200 PF00395 S-layer homology domain AF2641_04200 PF01520 N-acetylmuramoyl-L-alanine amidase AF2641_04210 PF08486 Stage II sporulation protein AF2641_04210 PF04122 Putative cell wall binding repeat 2 AF2641_04220 PF00953 Glycosyl transferase family 4 AF2641_04225 PF03816 Cell envelope-related transcriptional attenuator domain AF2641_04230 PF01205 Uncharacterized protein family UPF0029 AF2641_04230 PF09186 Domain of unknown function (DUF1949) AF2641_04235 PF05384 Sensor protein DegS AF2641_04235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_04235 PF07730 Histidine kinase AF2641_04240 PF00196 Bacterial regulatory proteins, luxR family AF2641_04240 PF00072 Response regulator receiver domain AF2641_04250 PF02645 Uncharacterised protein, DegV family COG1307 AF2641_04270 PF01312 FlhB HrpN YscU SpaS Family AF2641_04280 PF00700 Bacterial flagellin C-terminal helical region AF2641_04280 PF00669 Bacterial flagellin N-terminal helical region AF2641_04280 PF00669 Bacterial flagellin N-terminal helical region AF2641_04280 PF00700 Bacterial flagellin C-terminal helical region AF2641_04285 PF03885 Protein of unknown function (DUF327) AF2641_04305 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AF2641_04305 PF00460 Flagella basal body rod protein AF2641_04310 PF00669 Bacterial flagellin N-terminal helical region AF2641_04310 PF00700 Bacterial flagellin C-terminal helical region AF2641_04320 PF02623 FliW protein AF2641_04325 PF02599 Global regulator protein family AF2641_04335 PF00669 Bacterial flagellin N-terminal helical region AF2641_04335 PF00700 Bacterial flagellin C-terminal helical region AF2641_04340 PF00669 Bacterial flagellin N-terminal helical region AF2641_04340 PF00700 Bacterial flagellin C-terminal helical region AF2641_04345 PF03646 FlaG protein AF2641_04350 PF07196 Flagellin hook IN motif AF2641_04350 PF07195 Flagellar hook-associated protein 2 C-terminus AF2641_04350 PF02465 Flagellar hook-associated protein 2 N-terminus AF2641_04355 PF02561 Flagellar protein FliS AF2641_04370 PF01966 HD domain AF2641_04370 PF11871 Domain of unknown function (DUF3391) AF2641_04375 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AF2641_04375 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AF2641_04385 PF07516 SecA Wing and Scaffold domain AF2641_04385 PF01043 SecA preprotein cross-linking domain AF2641_04385 PF02810 SEC-C motif AF2641_04385 PF07517 SecA DEAD-like domain AF2641_04390 PF03462 PCRF domain AF2641_04390 PF00472 RF-1 domain AF2641_04395 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AF2641_04395 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AF2641_04400 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AF2641_04405 PF00005 ABC transporter AF2641_04410 PF18075 FtsX extracellular domain AF2641_04410 PF02687 FtsX-like permease family AF2641_04415 PF01551 Peptidase family M23 AF2641_04415 PF08525 Opacity-associated protein A N-terminal motif AF2641_04415 PF01476 LysM domain AF2641_04420 PF17820 PDZ domain AF2641_04420 PF01471 Putative peptidoglycan binding domain AF2641_04420 PF03572 Peptidase family S41 AF2641_04425 PF13411 MerR HTH family regulatory protein AF2641_04430 PF17820 PDZ domain AF2641_04435 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) AF2641_04440 PF04851 Type III restriction enzyme, res subunit AF2641_04440 PF17757 UvrB interaction domain AF2641_04440 PF12344 Ultra-violet resistance protein B AF2641_04440 PF02151 UvrB/uvrC motif AF2641_04440 PF00271 Helicase conserved C-terminal domain AF2641_04445 PF17760 UvrA interaction domain AF2641_04445 PF17755 UvrA DNA-binding domain AF2641_04445 PF00005 ABC transporter AF2641_04460 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AF2641_04470 PF01790 Prolipoprotein diacylglyceryl transferase AF2641_04475 PF07670 Nucleoside recognition AF2641_04480 PF13419 Haloacid dehalogenase-like hydrolase AF2641_04485 PF14602 Hexapeptide repeat of succinyl-transferase AF2641_04490 PF13393 Histidyl-tRNA synthetase AF2641_04495 PF01634 ATP phosphoribosyltransferase AF2641_04505 PF00475 Imidazoleglycerol-phosphate dehydratase AF2641_04510 PF00117 Glutamine amidotransferase class-I AF2641_04515 PF00977 Histidine biosynthesis protein AF2641_04520 PF00977 Histidine biosynthesis protein AF2641_04525 PF01502 Phosphoribosyl-AMP cyclohydrolase AF2641_04525 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AF2641_04535 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF2641_04540 PF00293 NUDIX domain AF2641_04545 PF03668 P-loop ATPase protein family AF2641_04550 PF01933 Uncharacterised protein family UPF0052 AF2641_04555 PF10298 WhiA N-terminal LAGLIDADG-like domain AF2641_04555 PF14527 WhiA LAGLIDADG-like domain AF2641_04555 PF02650 WhiA C-terminal HTH domain AF2641_04560 PF00381 PTS HPr component phosphorylation site AF2641_04565 PF00574 Clp protease AF2641_04575 PF04963 Sigma-54 factor, core binding domain AF2641_04575 PF00309 Sigma-54 factor, Activator interacting domain (AID) AF2641_04575 PF04552 Sigma-54, DNA binding domain AF2641_04585 PF04198 Putative sugar-binding domain AF2641_04590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AF2641_04590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AF2641_04595 PF00162 Phosphoglycerate kinase AF2641_04600 PF00121 Triosephosphate isomerase AF2641_04605 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AF2641_04605 PF01676 Metalloenzyme superfamily AF2641_04610 PF03952 Enolase, N-terminal domain AF2641_04610 PF00113 Enolase, C-terminal TIM barrel domain AF2641_04670 PF05593 RHS Repeat AF2641_04675 PF05593 RHS Repeat AF2641_04685 PF05593 RHS Repeat AF2641_04710 PF05593 RHS Repeat AF2641_04725 PF03840 Preprotein translocase SecG subunit AF2641_04730 PF12146 Serine aminopeptidase, S33 AF2641_04735 PF17876 Cold shock domain AF2641_04735 PF00575 S1 RNA binding domain AF2641_04735 PF08206 Ribonuclease B OB domain AF2641_04735 PF00773 RNB domain AF2641_04740 PF01668 SmpB protein AF2641_04760 PF07875 Coat F domain AF2641_04770 PF01619 Proline dehydrogenase AF2641_04775 PF14115 YuzL-like protein AF2641_04780 PF00378 Enoyl-CoA hydratase/isomerase AF2641_04780 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF2641_04780 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF2641_04785 PF02803 Thiolase, C-terminal domain AF2641_04785 PF00108 Thiolase, N-terminal domain AF2641_04790 PF02770 Acyl-CoA dehydrogenase, middle domain AF2641_04790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF2641_04790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF2641_04795 PF03960 ArsC family AF2641_04800 PF01597 Glycine cleavage H-protein AF2641_04810 PF01751 Toprim domain AF2641_04815 PF00085 Thioredoxin AF2641_04825 PF01053 Cys/Met metabolism PLP-dependent enzyme AF2641_04840 PF09383 NIL domain AF2641_04840 PF00005 ABC transporter AF2641_04845 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_04850 PF03180 NLPA lipoprotein AF2641_04855 PF02627 Carboxymuconolactone decarboxylase family AF2641_04860 PF00005 ABC transporter AF2641_04865 PF01458 Uncharacterized protein family (UPF0051) AF2641_04870 PF00266 Aminotransferase class-V AF2641_04875 PF01592 NifU-like N terminal domain AF2641_04880 PF01458 Uncharacterized protein family (UPF0051) AF2641_04885 PF02899 Phage integrase, N-terminal SAM-like domain AF2641_04885 PF00589 Phage integrase family AF2641_04920 PF01695 IstB-like ATP binding protein AF2641_04940 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AF2641_04960 PF00872 Transposase, Mutator family AF2641_04965 PF00579 tRNA synthetases class I (W and Y) AF2641_04970 PF07690 Major Facilitator Superfamily AF2641_04995 PF14028 Lantibiotic biosynthesis dehydratase C-term AF2641_04995 PF04738 Lantibiotic dehydratase, N terminus AF2641_05000 PF02899 Phage integrase, N-terminal SAM-like domain AF2641_05000 PF00589 Phage integrase family AF2641_05030 PF00005 ABC transporter AF2641_05040 PF01904 Protein of unknown function DUF72 AF2641_05045 PF01925 Sulfite exporter TauE/SafE AF2641_05050 PF02872 5'-nucleotidase, C-terminal domain AF2641_05055 PF08827 Domain of unknown function (DUF1805) AF2641_05060 PF09560 Sporulation protein YunB (Spo_YunB) AF2641_05065 PF00209 Sodium:neurotransmitter symporter family AF2641_05075 PF01551 Peptidase family M23 AF2641_05080 PF04055 Radical SAM superfamily AF2641_05080 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AF2641_05085 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AF2641_05090 PF06265 Protein of unknown function (DUF1027) AF2641_05105 PF01934 Protein of unknown function DUF86 AF2641_05115 PF13344 Haloacid dehalogenase-like hydrolase AF2641_05120 PF04608 Phosphatidylglycerophosphatase A AF2641_05130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AF2641_05130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AF2641_05135 PF01842 ACT domain AF2641_05135 PF00742 Homoserine dehydrogenase AF2641_05135 PF03447 Homoserine dehydrogenase, NAD binding domain AF2641_05140 PF00291 Pyridoxal-phosphate dependent enzyme AF2641_05145 PF00288 GHMP kinases N terminal domain AF2641_05145 PF08544 GHMP kinases C terminal AF2641_05150 PF01106 NifU-like domain AF2641_05155 PF07315 Protein of unknown function (DUF1462) AF2641_05160 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF2641_05165 PF07293 Protein of unknown function (DUF1450) AF2641_05175 PF01678 Diaminopimelate epimerase AF2641_05180 PF01521 Iron-sulphur cluster biosynthesis AF2641_05185 PF06305 Lipopolysaccharide assembly protein A domain AF2641_05190 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF2641_05195 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF2641_05200 PF14068 Putative membrane protein AF2641_05205 PF06725 3D domain AF2641_05210 PF02632 BioY family AF2641_05220 PF03600 Citrate transporter AF2641_05235 PF00080 Copper/zinc superoxide dismutase (SODC) AF2641_05240 PF01037 Lrp/AsnC ligand binding domain AF2641_05245 PF00155 Aminotransferase class I and II AF2641_05255 PF00575 S1 RNA binding domain AF2641_05260 PF04070 Domain of unknown function (DUF378) AF2641_05265 PF00465 Iron-containing alcohol dehydrogenase AF2641_05270 PF00342 Phosphoglucose isomerase AF2641_05275 PF08868 YugN-like family AF2641_05280 PF02254 TrkA-N domain AF2641_05280 PF07885 Ion channel AF2641_05285 PF08141 Small acid-soluble spore protein H family AF2641_05335 PF14867 Lantibiotic alpha AF2641_05340 PF00664 ABC transporter transmembrane region AF2641_05340 PF03412 Peptidase C39 family AF2641_05340 PF00005 ABC transporter AF2641_05360 PF13358 DDE superfamily endonuclease AF2641_05395 PF00005 ABC transporter AF2641_05400 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AF2641_05400 PF01610 Transposase AF2641_05400 PF13542 Helix-turn-helix domain of transposase family ISL3 AF2641_05425 PF13411 MerR HTH family regulatory protein AF2641_05430 PF01595 Cyclin M transmembrane N-terminal domain AF2641_05430 PF00571 CBS domain AF2641_05430 PF03471 Transporter associated domain AF2641_05435 PF01022 Bacterial regulatory protein, arsR family AF2641_05445 PF02308 MgtC family AF2641_05500 PF05698 Bacterial trigger factor protein (TF) C-terminus AF2641_05500 PF05697 Bacterial trigger factor protein (TF) AF2641_05580 PF16916 Dimerisation domain of Zinc Transporter AF2641_05580 PF01545 Cation efflux family AF2641_05585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AF2641_05585 PF02806 Alpha amylase, C-terminal all-beta domain AF2641_05585 PF00128 Alpha amylase, catalytic domain AF2641_05595 PF00483 Nucleotidyl transferase AF2641_05600 PF00534 Glycosyl transferases group 1 AF2641_05600 PF08323 Starch synthase catalytic domain AF2641_05605 PF00343 Carbohydrate phosphorylase AF2641_05610 PF01258 Prokaryotic dksA/traR C4-type zinc finger AF2641_05615 PF01040 UbiA prenyltransferase family AF2641_05620 PF00425 chorismate binding enzyme AF2641_05625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF2641_05625 PF16582 Middle domain of thiamine pyrophosphate AF2641_05625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AF2641_05630 PF00561 alpha/beta hydrolase fold AF2641_05635 PF00378 Enoyl-CoA hydratase/isomerase AF2641_05640 PF00501 AMP-binding enzyme AF2641_05640 PF13193 AMP-binding enzyme C-terminal domain AF2641_05645 PF02322 Cytochrome bd terminal oxidase subunit II AF2641_05650 PF01654 Cytochrome bd terminal oxidase subunit I AF2641_05655 PF07561 Domain of Unknown Function (DUF1540) AF2641_05670 PF00268 Ribonucleotide reductase, small chain AF2641_05675 PF00258 Flavodoxin AF2641_05680 PF07282 Putative transposase DNA-binding domain AF2641_05680 PF12323 Helix-turn-helix domain AF2641_05680 PF01385 Probable transposase AF2641_05685 PF02867 Ribonucleotide reductase, barrel domain AF2641_05685 PF00317 Ribonucleotide reductase, all-alpha domain AF2641_05685 PF03477 ATP cone domain AF2641_05690 PF02322 Cytochrome bd terminal oxidase subunit II AF2641_05695 PF01654 Cytochrome bd terminal oxidase subunit I AF2641_05700 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AF2641_05700 PF01297 Zinc-uptake complex component A periplasmic AF2641_05705 PF02492 CobW/HypB/UreG, nucleotide-binding domain AF2641_05705 PF07683 Cobalamin synthesis protein cobW C-terminal domain AF2641_05710 PF01809 Putative membrane protein insertion efficiency factor AF2641_05715 PF02664 S-Ribosylhomocysteinase (LuxS) AF2641_05725 PF00210 Ferritin-like domain AF2641_05735 PF00293 NUDIX domain AF2641_05740 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_05745 PF00005 ABC transporter AF2641_05755 PF10763 Protein of unknown function (DUF2584) AF2641_05765 PF00005 ABC transporter AF2641_05770 PF02361 Cobalt transport protein AF2641_05790 PF00438 S-adenosylmethionine synthetase, N-terminal domain AF2641_05790 PF02773 S-adenosylmethionine synthetase, C-terminal domain AF2641_05790 PF02772 S-adenosylmethionine synthetase, central domain AF2641_05795 PF01569 PAP2 superfamily AF2641_05800 PF00132 Bacterial transferase hexapeptide (six repeats) AF2641_05805 PF12146 Serine aminopeptidase, S33 AF2641_05810 PF10776 Protein of unknown function (DUF2600) AF2641_05820 PF06962 Putative rRNA methylase AF2641_05825 PF16199 Radical_SAM C-terminal domain AF2641_05825 PF04055 Radical SAM superfamily AF2641_05830 PF10732 Protein of unknown function (DUF2524) AF2641_05840 PF08264 Anticodon-binding domain of tRNA AF2641_05840 PF00133 tRNA synthetases class I (I, L, M and V) AF2641_05840 PF13603 Leucyl-tRNA synthetase, Domain 2 AF2641_05840 PF09334 tRNA synthetases class I (M) AF2641_05845 PF00581 Rhodanese-like domain AF2641_05855 PF14667 Polysaccharide biosynthesis C-terminal domain AF2641_05855 PF01943 Polysaccharide biosynthesis protein AF2641_05865 PF01479 S4 domain AF2641_05865 PF00849 RNA pseudouridylate synthase AF2641_05870 PF08220 DeoR-like helix-turn-helix domain AF2641_05875 PF01546 Peptidase family M20/M25/M40 AF2641_05880 PF12832 MFS_1 like family AF2641_05885 PF02834 LigT like Phosphoesterase AF2641_05890 PF03788 LrgA family AF2641_05895 PF04172 LrgB-like family AF2641_05905 PF00128 Alpha amylase, catalytic domain AF2641_05905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AF2641_05905 PF17999 Pullulanase N1-terminal domain AF2641_05910 PF01636 Phosphotransferase enzyme family AF2641_05915 PF14165 YtzH-like protein AF2641_05920 PF02390 Putative methyltransferase AF2641_05925 PF00753 Metallo-beta-lactamase superfamily AF2641_05935 PF05343 M42 glutamyl aminopeptidase AF2641_05940 PF01931 Protein of unknown function DUF84 AF2641_05945 PF00085 Thioredoxin AF2641_05950 PF07285 Protein of unknown function (DUF1444) AF2641_05955 PF01588 Putative tRNA binding domain AF2641_05955 PF14794 Domain of unknown function (DUF4479) AF2641_05960 PF09397 Ftsk gamma domain AF2641_05960 PF01580 FtsK/SpoIIIE family AF2641_05960 PF17854 FtsK alpha domain AF2641_05960 PF01580 FtsK/SpoIIIE family AF2641_05960 PF09397 Ftsk gamma domain AF2641_05960 PF17854 FtsK alpha domain AF2641_05970 PF08245 Mur ligase middle domain AF2641_05970 PF02875 Mur ligase family, glutamate ligase domain AF2641_05970 PF01225 Mur ligase family, catalytic domain AF2641_05975 PF11009 Protein of unknown function (DUF2847) AF2641_05985 PF06103 Bacterial protein of unknown function (DUF948) AF2641_05990 PF02073 Thermophilic metalloprotease (M29) AF2641_05995 PF02491 SHS2 domain inserted in FTSA AF2641_06000 PF01817 Chorismate mutase type II AF2641_06000 PF00793 DAHP synthetase I family AF2641_06005 PF00356 Bacterial regulatory proteins, lacI family AF2641_06010 PF01609 Transposase DDE domain AF2641_06020 PF00571 CBS domain AF2641_06025 PF00583 Acetyltransferase (GNAT) family AF2641_06030 PF00501 AMP-binding enzyme AF2641_06030 PF13193 AMP-binding enzyme C-terminal domain AF2641_06035 PF00912 Transglycosylase AF2641_06035 PF00905 Penicillin binding protein transpeptidase domain AF2641_06040 PF00579 tRNA synthetases class I (W and Y) AF2641_06040 PF01479 S4 domain AF2641_06045 PF01479 S4 domain AF2641_06045 PF00163 Ribosomal protein S4/S9 N-terminal domain AF2641_06050 PF00990 Diguanylate cyclase, GGDEF domain AF2641_06055 PF13185 GAF domain AF2641_06060 PF02811 PHP domain AF2641_06065 PF06160 Septation ring formation regulator, EzrA AF2641_06070 PF05525 Branched-chain amino acid transport protein AF2641_06075 PF00266 Aminotransferase class-V AF2641_06080 PF02568 Thiamine biosynthesis protein (ThiI) AF2641_06080 PF02926 THUMP domain AF2641_06085 PF00269 Small, acid-soluble spore proteins, alpha/beta type AF2641_06090 PF13193 AMP-binding enzyme C-terminal domain AF2641_06090 PF00501 AMP-binding enzyme AF2641_06095 PF00005 ABC transporter AF2641_06095 PF12399 Branched-chain amino acid ATP-binding cassette transporter AF2641_06100 PF00501 AMP-binding enzyme AF2641_06105 PF02653 Branched-chain amino acid transport system / permease component AF2641_06115 PF13458 Periplasmic binding protein AF2641_06120 PF00005 ABC transporter AF2641_06130 PF01513 ATP-NAD kinase AF2641_06140 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AF2641_06145 PF08534 Redoxin AF2641_06150 PF02384 N-6 DNA Methylase AF2641_06155 PF00871 Acetokinase family AF2641_06165 PF00764 Arginosuccinate synthase AF2641_06170 PF14698 Argininosuccinate lyase C-terminal AF2641_06170 PF00206 Lyase AF2641_06185 PF00557 Metallopeptidase family M24 AF2641_06185 PF01321 Creatinase/Prolidase N-terminal domain AF2641_06195 PF00571 CBS domain AF2641_06195 PF07085 DRTGG domain AF2641_06195 PF03061 Thioesterase superfamily AF2641_06195 PF00392 Bacterial regulatory proteins, gntR family AF2641_06200 PF14007 YtpI-like protein AF2641_06205 PF01368 DHH family AF2641_06205 PF02272 DHHA1 domain AF2641_06215 PF14034 Sporulation protein YtrH AF2641_06220 PF01336 OB-fold nucleic acid binding domain AF2641_06220 PF02811 PHP domain AF2641_06220 PF14579 Helix-hairpin-helix motif AF2641_06220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AF2641_06220 PF07733 Bacterial DNA polymerase III alpha NTPase domain AF2641_06225 PF03949 Malic enzyme, NAD binding domain AF2641_06225 PF00390 Malic enzyme, N-terminal domain AF2641_06230 PF07729 FCD domain AF2641_06230 PF00392 Bacterial regulatory proteins, gntR family AF2641_06235 PF17848 Acetyl-coA carboxylase zinc finger domain AF2641_06235 PF01039 Carboxyl transferase domain AF2641_06240 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AF2641_06245 PF00365 Phosphofructokinase AF2641_06250 PF02887 Pyruvate kinase, alpha/beta domain AF2641_06250 PF00391 PEP-utilising enzyme, mobile domain AF2641_06250 PF00224 Pyruvate kinase, barrel domain AF2641_06255 PF04186 FxsA cytoplasmic membrane protein AF2641_06260 PF01594 AI-2E family transporter AF2641_06265 PF04284 Protein of unknown function (DUF441) AF2641_06270 PF00285 Citrate synthase, C-terminal domain AF2641_06275 PF00180 Isocitrate/isopropylmalate dehydrogenase AF2641_06280 PF00056 lactate/malate dehydrogenase, NAD binding domain AF2641_06280 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AF2641_06290 PF00072 Response regulator receiver domain AF2641_06290 PF00486 Transcriptional regulatory protein, C terminal AF2641_06295 PF00512 His Kinase A (phospho-acceptor) domain AF2641_06295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_06295 PF00989 PAS fold AF2641_06295 PF16736 Single Cache-like AF2641_06300 PF01367 5'-3' exonuclease, C-terminal SAM fold AF2641_06300 PF00476 DNA polymerase family A AF2641_06300 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AF2641_06305 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AF2641_06305 PF06827 Zinc finger found in FPG and IleRS AF2641_06305 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AF2641_06310 PF02659 Putative manganese efflux pump AF2641_06315 PF01121 Dephospho-CoA kinase AF2641_06320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AF2641_06320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AF2641_06325 PF02675 S-adenosylmethionine decarboxylase AF2641_06335 PF03477 ATP cone domain AF2641_06340 PF07261 Replication initiation and membrane attachment AF2641_06345 PF07319 Primosomal protein DnaI N-terminus AF2641_06345 PF01695 IstB-like ATP binding protein AF2641_06350 PF08812 YtxC-like family AF2641_06355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AF2641_06355 PF03129 Anticodon binding domain AF2641_06355 PF02824 TGS domain AF2641_06355 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AF2641_06360 PF00707 Translation initiation factor IF-3, C-terminal domain AF2641_06360 PF05198 Translation initiation factor IF-3, N-terminal domain AF2641_06365 PF01632 Ribosomal protein L35 AF2641_06370 PF00453 Ribosomal protein L20 AF2641_06380 PF05343 M42 glutamyl aminopeptidase AF2641_06385 PF13416 Bacterial extracellular solute-binding protein AF2641_06390 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_06395 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_06400 PF16874 Glycosyl hydrolase family 36 C-terminal domain AF2641_06400 PF16875 Glycosyl hydrolase family 36 N-terminal domain AF2641_06405 PF08544 GHMP kinases C terminal AF2641_06405 PF10509 Galactokinase galactose-binding signature AF2641_06405 PF00288 GHMP kinases N terminal domain AF2641_06410 PF16363 GDP-mannose 4,6 dehydratase AF2641_06415 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AF2641_06415 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AF2641_06420 PF08533 Beta-galactosidase C-terminal domain AF2641_06420 PF08532 Beta-galactosidase trimerisation domain AF2641_06420 PF02449 Beta-galactosidase AF2641_06430 PF01263 Aldose 1-epimerase AF2641_06435 PF14098 Small, acid-soluble spore protein I AF2641_06440 PF01625 Peptide methionine sulfoxide reductase AF2641_06445 PF00588 SpoU rRNA Methylase family AF2641_06445 PF08032 RNA 2'-O ribose methyltransferase substrate binding AF2641_06450 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AF2641_06450 PF01409 tRNA synthetases class II core domain (F) AF2641_06455 PF03484 tRNA synthetase B5 domain AF2641_06455 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AF2641_06455 PF01588 Putative tRNA binding domain AF2641_06455 PF03483 B3/4 domain AF2641_06455 PF03147 Ferredoxin-fold anticodon binding domain AF2641_06520 PF07730 Histidine kinase AF2641_06520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_06525 PF00072 Response regulator receiver domain AF2641_06525 PF00196 Bacterial regulatory proteins, luxR family AF2641_06555 PF13358 DDE superfamily endonuclease AF2641_06560 PF00005 ABC transporter AF2641_06560 PF00664 ABC transporter transmembrane region AF2641_06565 PF00005 ABC transporter AF2641_06575 PF01609 Transposase DDE domain AF2641_06610 PF03176 MMPL family AF2641_06625 PF05164 Cell division protein ZapA AF2641_06630 PF02674 Colicin V production protein AF2641_06635 PF14716 Helix-hairpin-helix domain AF2641_06635 PF14791 DNA polymerase beta thumb AF2641_06635 PF02811 PHP domain AF2641_06640 PF01713 Smr domain AF2641_06640 PF00488 MutS domain V AF2641_06645 PF03994 Domain of Unknown Function (DUF350) AF2641_06650 PF00501 AMP-binding enzyme AF2641_06650 PF13193 AMP-binding enzyme C-terminal domain AF2641_06655 PF00440 Bacterial regulatory proteins, tetR family AF2641_06655 PF08359 YsiA-like protein, C-terminal region AF2641_06660 PF00378 Enoyl-CoA hydratase/isomerase AF2641_06665 PF01012 Electron transfer flavoprotein domain AF2641_06670 PF01012 Electron transfer flavoprotein domain AF2641_06670 PF00766 Electron transfer flavoprotein FAD-binding domain AF2641_06675 PF00085 Thioredoxin AF2641_06685 PF01370 NAD dependent epimerase/dehydratase family AF2641_06700 PF00535 Glycosyl transferase family 2 AF2641_06700 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AF2641_06720 PF01541 GIY-YIG catalytic domain AF2641_06720 PF02151 UvrB/uvrC motif AF2641_06720 PF08459 UvrC Helix-hairpin-helix N-terminal AF2641_06725 PF10702 Protein of unknown function (DUF2507) AF2641_06730 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AF2641_06735 PF02910 Fumarate reductase flavoprotein C-term AF2641_06735 PF00890 FAD binding domain AF2641_06740 PF13183 4Fe-4S dicluster domain AF2641_06740 PF13085 2Fe-2S iron-sulfur cluster binding domain AF2641_06745 PF03061 Thioesterase superfamily AF2641_06750 PF00196 Bacterial regulatory proteins, luxR family AF2641_06755 PF01177 Asp/Glu/Hydantoin racemase AF2641_06760 PF10646 Sporulation and spore germination AF2641_06765 PF01138 3' exoribonuclease family, domain 1 AF2641_06765 PF03725 3' exoribonuclease family, domain 2 AF2641_06770 PF01725 Ham1 family AF2641_06775 PF12850 Calcineurin-like phosphoesterase superfamily domain AF2641_06785 PF01063 Amino-transferase class IV AF2641_06790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF2641_06790 PF00205 Thiamine pyrophosphate enzyme, central domain AF2641_06790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AF2641_06795 PF10369 Small subunit of acetolactate synthase AF2641_06795 PF01842 ACT domain AF2641_06800 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AF2641_06800 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AF2641_06805 PF00682 HMGL-like AF2641_06805 PF08502 LeuA allosteric (dimerisation) domain AF2641_06810 PF00180 Isocitrate/isopropylmalate dehydrogenase AF2641_06815 PF00330 Aconitase family (aconitate hydratase) AF2641_06820 PF00694 Aconitase C-terminal domain AF2641_06830 PF05697 Bacterial trigger factor protein (TF) AF2641_06830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AF2641_06830 PF05698 Bacterial trigger factor protein (TF) C-terminus AF2641_06835 PF06689 ClpX C4-type zinc finger AF2641_06835 PF07724 AAA domain (Cdc48 subfamily) AF2641_06835 PF10431 C-terminal, D2-small domain, of ClpB protein AF2641_06840 PF05362 Lon protease (S16) C-terminal proteolytic domain AF2641_06840 PF00004 ATPase family associated with various cellular activities (AAA) AF2641_06845 PF05362 Lon protease (S16) C-terminal proteolytic domain AF2641_06845 PF02190 ATP-dependent protease La (LON) substrate-binding domain AF2641_06845 PF00004 ATPase family associated with various cellular activities (AAA) AF2641_06850 PF01926 50S ribosome-binding GTPase AF2641_06860 PF01488 Shikimate / quinate 5-dehydrogenase AF2641_06860 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AF2641_06860 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AF2641_06865 PF01578 Cytochrome C assembly protein AF2641_06870 PF03900 Porphobilinogen deaminase, C-terminal domain AF2641_06870 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AF2641_06875 PF02602 Uroporphyrinogen-III synthase HemD AF2641_06880 PF00490 Delta-aminolevulinic acid dehydratase AF2641_06885 PF00202 Aminotransferase class-III AF2641_06890 PF01476 LysM domain AF2641_06890 PF01476 LysM domain AF2641_06905 PF10458 Valyl tRNA synthetase tRNA binding arm AF2641_06905 PF00133 tRNA synthetases class I (I, L, M and V) AF2641_06905 PF08264 Anticodon-binding domain of tRNA AF2641_06910 PF08245 Mur ligase middle domain AF2641_06910 PF02875 Mur ligase family, glutamate ligase domain AF2641_06955 PF00437 Type II/IV secretion system protein AF2641_06960 PF00437 Type II/IV secretion system protein AF2641_06965 PF00482 Type II secretion system (T2SS), protein F AF2641_06970 PF00114 Pilin (bacterial filament) AF2641_06970 PF07963 Prokaryotic N-terminal methylation motif AF2641_06975 PF06750 Bacterial Peptidase A24 N-terminal domain AF2641_06975 PF01478 Type IV leader peptidase family AF2641_07005 PF02545 Maf-like protein AF2641_07010 PF04002 RadC-like JAB domain AF2641_07020 PF04085 rod shape-determining protein MreC AF2641_07030 PF03775 Septum formation inhibitor MinC, C-terminal domain AF2641_07035 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AF2641_07040 PF01551 Peptidase family M23 AF2641_07045 PF02163 Peptidase family M50 AF2641_07050 PF00829 Ribosomal prokaryotic L21 protein AF2641_07055 PF04327 Cysteine protease Prp AF2641_07060 PF01016 Ribosomal L27 protein AF2641_07065 PF14682 Sporulation initiation phospho-transferase B, C-terminal AF2641_07065 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AF2641_07070 PF09269 Domain of unknown function (DUF1967) AF2641_07070 PF01018 GTP1/OBG AF2641_07070 PF01926 50S ribosome-binding GTPase AF2641_07075 PF01842 ACT domain AF2641_07080 PF01842 ACT domain AF2641_07080 PF00800 Prephenate dehydratase AF2641_07085 PF08279 HTH domain AF2641_07085 PF02829 3H domain AF2641_07090 PF00266 Aminotransferase class-V AF2641_07095 PF00890 FAD binding domain AF2641_07095 PF02910 Fumarate reductase flavoprotein C-term AF2641_07100 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AF2641_07100 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AF2641_07105 PF02445 Quinolinate synthetase A protein AF2641_07110 PF01476 LysM domain AF2641_07115 PF02540 NAD synthase AF2641_07120 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AF2641_07125 PF01709 Transcriptional regulator AF2641_07130 PF08955 BofC C-terminal domain AF2641_07130 PF08977 Bypass of Forespore C, N terminal AF2641_07135 PF07499 RuvA, C-terminal domain AF2641_07135 PF01330 RuvA N terminal domain AF2641_07140 PF05491 RuvB C-terminal winged helix domain AF2641_07140 PF05496 Holliday junction DNA helicase RuvB P-loop domain AF2641_07140 PF17864 RuvB AAA lid domain AF2641_07145 PF07282 Putative transposase DNA-binding domain AF2641_07145 PF01385 Probable transposase AF2641_07145 PF12323 Helix-turn-helix domain AF2641_07150 PF11146 Protein of unknown function (DUF2905) AF2641_07155 PF02547 Queuosine biosynthesis protein AF2641_07160 PF01702 Queuine tRNA-ribosyltransferase AF2641_07165 PF02699 Preprotein translocase subunit AF2641_07170 PF12670 Protein of unknown function (DUF3792) AF2641_07175 PF04239 Protein of unknown function (DUF421) AF2641_07180 PF14667 Polysaccharide biosynthesis C-terminal domain AF2641_07180 PF01943 Polysaccharide biosynthesis protein AF2641_07185 PF13797 Post-transcriptional regulator AF2641_07190 PF02355 Protein export membrane protein AF2641_07190 PF07549 SecD/SecF GG Motif AF2641_07195 PF01545 Cation efflux family AF2641_07195 PF16916 Dimerisation domain of Zinc Transporter AF2641_07200 PF17768 RecJ OB domain AF2641_07200 PF02272 DHHA1 domain AF2641_07200 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AF2641_07200 PF01368 DHH family AF2641_07205 PF00156 Phosphoribosyl transferase domain AF2641_07210 PF13291 ACT domain AF2641_07210 PF04607 Region found in RelA / SpoT proteins AF2641_07210 PF02824 TGS domain AF2641_07215 PF02580 D-Tyr-tRNA(Tyr) deacylase AF2641_07220 PF01520 N-acetylmuramoyl-L-alanine amidase AF2641_07220 PF08239 Bacterial SH3 domain AF2641_07225 PF13393 Histidyl-tRNA synthetase AF2641_07225 PF03129 Anticodon binding domain AF2641_07230 PF01336 OB-fold nucleic acid binding domain AF2641_07230 PF02938 GAD domain AF2641_07230 PF00152 tRNA synthetases class II (D, K and N) AF2641_07240 PF00899 ThiF family AF2641_07245 PF00873 AcrB/AcrD/AcrF family AF2641_07250 PF00440 Bacterial regulatory proteins, tetR family AF2641_07255 PF05496 Holliday junction DNA helicase RuvB P-loop domain AF2641_07255 PF16193 AAA C-terminal domain AF2641_07255 PF12002 MgsA AAA+ ATPase C terminal AF2641_07260 PF02082 Transcriptional regulator AF2641_07265 PF00266 Aminotransferase class-V AF2641_07285 PF01609 Transposase DDE domain AF2641_07295 PF13056 Protein of unknown function (DUF3918) AF2641_07300 PF01594 AI-2E family transporter AF2641_07305 PF02272 DHHA1 domain AF2641_07305 PF01411 tRNA synthetases class II (A) AF2641_07305 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AF2641_07310 PF06135 IreB regulatory phosphoprotein AF2641_07315 PF03652 Holliday junction resolvase AF2641_07320 PF06949 Protein of unknown function (DUF1292) AF2641_07325 PF02618 YceG-like family AF2641_07345 PF00485 Phosphoribulokinase / Uridine kinase family AF2641_07350 PF03449 Transcription elongation factor, N-terminal AF2641_07350 PF01272 Transcription elongation factor, GreA/GreB, C-term AF2641_07355 PF00905 Penicillin binding protein transpeptidase domain AF2641_07355 PF03717 Penicillin-binding Protein dimerisation domain AF2641_07360 PF07423 Domain of unknown function (DUF1510) AF2641_07365 PF10750 Protein of unknown function (DUF2536) AF2641_07370 PF13649 Methyltransferase domain AF2641_07375 PF01048 Phosphorylase superfamily AF2641_07380 PF00291 Pyridoxal-phosphate dependent enzyme AF2641_07385 PF01053 Cys/Met metabolism PLP-dependent enzyme AF2641_07395 PF00565 Staphylococcal nuclease homologue AF2641_07420 PF18395 Cas3 C-terminal domain AF2641_07420 PF00270 DEAD/DEAH box helicase AF2641_07420 PF18019 HD domain AF2641_07430 PF01867 CRISPR associated protein Cas1 AF2641_07435 PF09827 CRISPR associated protein Cas2 AF2641_07445 PF04542 Sigma-70 region 2 AF2641_07445 PF04545 Sigma-70, region 4 AF2641_07450 PF02386 Cation transport protein AF2641_07455 PF13677 Membrane MotB of proton-channel complex MotA/MotB AF2641_07455 PF00691 OmpA family AF2641_07460 PF01618 MotA/TolQ/ExbB proton channel family AF2641_07465 PF01066 CDP-alcohol phosphatidyltransferase AF2641_07470 PF02666 Phosphatidylserine decarboxylase AF2641_07475 PF08970 Sporulation inhibitor A AF2641_07485 PF01926 50S ribosome-binding GTPase AF2641_07490 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AF2641_07490 PF08501 Shikimate dehydrogenase substrate binding domain AF2641_07490 PF01488 Shikimate / quinate 5-dehydrogenase AF2641_07495 PF01985 CRS1 / YhbY (CRM) domain AF2641_07500 PF01467 Cytidylyltransferase-like AF2641_07505 PF01966 HD domain AF2641_07515 PF13649 Methyltransferase domain AF2641_07520 PF03807 NADP oxidoreductase coenzyme F420-dependent AF2641_07520 PF14748 Pyrroline-5-carboxylate reductase dimerisation AF2641_07525 PF10531 SLBB domain AF2641_07530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AF2641_07535 PF03772 Competence protein AF2641_07535 PF00753 Metallo-beta-lactamase superfamily AF2641_07535 PF13567 Domain of unknown function (DUF4131) AF2641_07540 PF14141 YqzM-like protein AF2641_07545 PF06144 DNA polymerase III, delta subunit AF2641_07550 PF00027 Cyclic nucleotide-binding domain AF2641_07550 PF13545 Crp-like helix-turn-helix domain AF2641_07555 PF01649 Ribosomal protein S20 AF2641_07560 PF03418 Germination protease AF2641_07565 PF07454 Stage II sporulation protein P (SpoIIP) AF2641_07575 PF03144 Elongation factor Tu domain 2 AF2641_07575 PF00679 Elongation factor G C-terminus AF2641_07575 PF06421 GTP-binding protein LepA C-terminus AF2641_07575 PF00009 Elongation factor Tu GTP binding domain AF2641_07580 PF06969 HemN C-terminal domain AF2641_07580 PF04055 Radical SAM superfamily AF2641_07585 PF01628 HrcA protein C terminal domain AF2641_07590 PF01025 GrpE AF2641_07595 PF00012 Hsp70 protein AF2641_07600 PF00684 DnaJ central domain AF2641_07600 PF01556 DnaJ C terminal domain AF2641_07600 PF00226 DnaJ domain AF2641_07610 PF04452 RNA methyltransferase AF2641_07615 PF04055 Radical SAM superfamily AF2641_07615 PF00919 Uncharacterized protein family UPF0004 AF2641_07615 PF01938 TRAM domain AF2641_07620 PF01165 Ribosomal protein S21 AF2641_07625 PF09424 Yqey-like protein AF2641_07630 PF01972 Serine dehydrogenase proteinase AF2641_07630 PF01957 NfeD-like C-terminal, partner-binding AF2641_07635 PF12127 SigmaW regulon antibacterial AF2641_07645 PF07873 YabP family AF2641_07650 PF06898 Putative stage IV sporulation protein YqfD AF2641_07655 PF02562 PhoH-like protein AF2641_07660 PF02130 Uncharacterized protein family UPF0054 AF2641_07665 PF01219 Prokaryotic diacylglycerol kinase AF2641_07670 PF01926 50S ribosome-binding GTPase AF2641_07670 PF07650 KH domain AF2641_07675 PF14006 YqzL-like protein AF2641_07680 PF11967 Recombination protein O N terminal AF2641_07680 PF02565 Recombination protein O C terminal AF2641_07685 PF00571 CBS domain AF2641_07685 PF08279 HTH domain AF2641_07690 PF03618 Kinase/pyrophosphorylase AF2641_07695 PF01807 CHC2 zinc finger AF2641_07695 PF10410 DnaB-helicase binding domain of primase AF2641_07695 PF08275 DNA primase catalytic core, N-terminal domain AF2641_07700 PF03979 Sigma-70 factor, region 1.1 AF2641_07700 PF00140 Sigma-70 factor, region 1.2 AF2641_07700 PF04545 Sigma-70, region 4 AF2641_07700 PF04539 Sigma-70 region 3 AF2641_07700 PF04542 Sigma-70 region 2 AF2641_07710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AF2641_07715 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AF2641_07720 PF01784 NIF3 (NGG1p interacting factor 3) AF2641_07725 PF02401 LytB protein AF2641_07735 PF00270 DEAD/DEAH box helicase AF2641_07735 PF00271 Helicase conserved C-terminal domain AF2641_07740 PF01261 Xylose isomerase-like TIM barrel AF2641_07750 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AF2641_07750 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AF2641_07755 PF00005 ABC transporter AF2641_07760 PF00950 ABC 3 transport family AF2641_07765 PF01475 Ferric uptake regulator family AF2641_07780 PF04551 GcpE protein AF2641_07790 PF00672 HAMP domain AF2641_07790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_07790 PF02743 Cache domain AF2641_07795 PF06691 Protein of unknown function (DUF1189) AF2641_07805 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AF2641_07805 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AF2641_07810 PF07690 Major Facilitator Superfamily AF2641_07820 PF12849 PBP superfamily domain AF2641_07825 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_07830 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_07835 PF00005 ABC transporter AF2641_07840 PF01895 PhoU domain AF2641_07855 PF00483 Nucleotidyl transferase AF2641_07860 PF00471 Ribosomal protein L33 AF2641_07865 PF01812 5-formyltetrahydrofolate cyclo-ligase family AF2641_07870 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AF2641_07870 PF00056 lactate/malate dehydrogenase, NAD binding domain AF2641_07880 PF01694 Rhomboid family AF2641_07890 PF03323 Bacillus/Clostridium GerA spore germination protein AF2641_07895 PF06014 Bacterial protein of unknown function (DUF910) AF2641_07900 PF00480 ROK family AF2641_07905 PF00884 Sulfatase AF2641_07910 PF01476 LysM domain AF2641_07910 PF00246 Zinc carboxypeptidase AF2641_07920 PF00753 Metallo-beta-lactamase superfamily AF2641_07930 PF11117 Protein of unknown function (DUF2626) AF2641_07940 PF03960 ArsC family AF2641_07945 PF00437 Type II/IV secretion system protein AF2641_07950 PF00482 Type II secretion system (T2SS), protein F AF2641_07955 PF07963 Prokaryotic N-terminal methylation motif AF2641_07960 PF07963 Prokaryotic N-terminal methylation motif AF2641_07980 PF01202 Shikimate kinase AF2641_07985 PF14038 YqzE-like protein AF2641_07990 PF11079 Bacterial protein YqhG of unknown function AF2641_07995 PF00176 SNF2 family N-terminal domain AF2641_07995 PF00271 Helicase conserved C-terminal domain AF2641_08000 PF08669 Glycine cleavage T-protein C-terminal barrel domain AF2641_08000 PF01571 Aminomethyltransferase folate-binding domain AF2641_08005 PF02347 Glycine cleavage system P-protein AF2641_08015 PF00581 Rhodanese-like domain AF2641_08020 PF03099 Biotin/lipoate A/B protein ligase family AF2641_08025 PF02867 Ribonucleotide reductase, barrel domain AF2641_08025 PF08471 Class II vitamin B12-dependent ribonucleotide reductase AF2641_08030 PF00317 Ribonucleotide reductase, all-alpha domain AF2641_08030 PF03477 ATP cone domain AF2641_08030 PF02867 Ribonucleotide reductase, barrel domain AF2641_08040 PF02742 Iron dependent repressor, metal binding and dimerisation domain AF2641_08040 PF01325 Iron dependent repressor, N-terminal DNA binding domain AF2641_08045 PF01734 Patatin-like phospholipase AF2641_08055 PF07136 Protein of unknown function (DUF1385) AF2641_08060 PF11085 Conserved membrane protein YqhR AF2641_08065 PF01220 Dehydroquinase class II AF2641_08070 PF01321 Creatinase/Prolidase N-terminal domain AF2641_08070 PF00557 Metallopeptidase family M24 AF2641_08075 PF09285 Elongation factor P, C-terminal AF2641_08075 PF08207 Elongation factor P (EF-P) KOW-like domain AF2641_08075 PF01132 Elongation factor P (EF-P) OB domain AF2641_08090 PF10942 Protein of unknown function (DUF2619) AF2641_08100 PF09548 Stage III sporulation protein AB (spore_III_AB) AF2641_08105 PF06686 Stage III sporulation protein AC/AD protein family AF2641_08110 PF06686 Stage III sporulation protein AC/AD protein family AF2641_08115 PF09546 Stage III sporulation protein AE (spore_III_AE) AF2641_08120 PF09581 Stage III sporulation protein AF (Spore_III_AF) AF2641_08130 PF12685 SpoIIIAH-like protein AF2641_08135 PF00364 Biotin-requiring enzyme AF2641_08140 PF02785 Biotin carboxylase C-terminal domain AF2641_08140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AF2641_08140 PF00289 Biotin carboxylase, N-terminal domain AF2641_08145 PF03780 Asp23 family, cell envelope-related function AF2641_08150 PF01029 NusB family AF2641_08155 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AF2641_08155 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AF2641_08160 PF13742 OB-fold nucleic acid binding domain AF2641_08160 PF02601 Exonuclease VII, large subunit AF2641_08165 PF02609 Exonuclease VII small subunit AF2641_08170 PF00348 Polyprenyl synthetase AF2641_08175 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AF2641_08175 PF02779 Transketolase, pyrimidine binding domain AF2641_08175 PF02780 Transketolase, C-terminal domain AF2641_08180 PF01479 S4 domain AF2641_08180 PF01728 FtsJ-like methyltransferase AF2641_08185 PF02863 Arginine repressor, C-terminal domain AF2641_08185 PF01316 Arginine repressor, DNA binding domain AF2641_08190 PF13476 AAA domain AF2641_08195 PF05580 SpoIVB peptidase S55 AF2641_08195 PF17820 PDZ domain AF2641_08200 PF00072 Response regulator receiver domain AF2641_08200 PF08769 Sporulation initiation factor Spo0A C terminal AF2641_08205 PF14174 YycC-like protein AF2641_08210 PF03009 Glycerophosphoryl diester phosphodiesterase family AF2641_08215 PF11118 Protein of unknown function (DUF2627) AF2641_08220 PF00158 Sigma-54 interaction domain AF2641_08220 PF00989 PAS fold AF2641_08220 PF02954 Bacterial regulatory protein, Fis family AF2641_08225 PF01515 Phosphate acetyl/butaryl transferase AF2641_08230 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AF2641_08230 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AF2641_08235 PF00871 Acetokinase family AF2641_08240 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF2641_08240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AF2641_08245 PF00676 Dehydrogenase E1 component AF2641_08250 PF02779 Transketolase, pyrimidine binding domain AF2641_08250 PF02780 Transketolase, C-terminal domain AF2641_08255 PF02817 e3 binding domain AF2641_08255 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AF2641_08255 PF00364 Biotin-requiring enzyme AF2641_08260 PF01642 Methylmalonyl-CoA mutase AF2641_08265 PF02310 B12 binding domain AF2641_08265 PF01642 Methylmalonyl-CoA mutase AF2641_08275 PF06081 Aromatic acid exporter family member 1 AF2641_08275 PF11728 Putative aromatic acid exporter C-terminal domain AF2641_08280 PF03734 L,D-transpeptidase catalytic domain AF2641_08290 PF01039 Carboxyl transferase domain AF2641_08300 PF01546 Peptidase family M20/M25/M40 AF2641_08300 PF07687 Peptidase dimerisation domain AF2641_08305 PF01584 CheW-like domain AF2641_08310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AF2641_08310 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AF2641_08315 PF04199 Putative cyclase AF2641_08320 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AF2641_08320 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AF2641_08325 PF00753 Metallo-beta-lactamase superfamily AF2641_08325 PF12706 Beta-lactamase superfamily domain AF2641_08355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AF2641_08360 PF14748 Pyrroline-5-carboxylate reductase dimerisation AF2641_08360 PF03807 NADP oxidoreductase coenzyme F420-dependent AF2641_08365 PF00753 Metallo-beta-lactamase superfamily AF2641_08370 PF00106 short chain dehydrogenase AF2641_08375 PF01521 Iron-sulphur cluster biosynthesis AF2641_08385 PF10827 Protein of unknown function (DUF2552) AF2641_08395 PF00248 Aldo/keto reductase family AF2641_08400 PF00293 NUDIX domain AF2641_08405 PF01944 Stage II sporulation protein M AF2641_08415 PF12323 Helix-turn-helix domain AF2641_08415 PF01385 Probable transposase AF2641_08415 PF07282 Putative transposase DNA-binding domain AF2641_08420 PF01475 Ferric uptake regulator family AF2641_08425 PF14004 Protein of unknown function (DUF4227) AF2641_08430 PF00589 Phage integrase family AF2641_08430 PF02899 Phage integrase, N-terminal SAM-like domain AF2641_08435 PF01676 Metalloenzyme superfamily AF2641_08440 PF01048 Phosphorylase superfamily AF2641_08445 PF02885 Glycosyl transferase family, helical bundle domain AF2641_08445 PF00591 Glycosyl transferase family, a/b domain AF2641_08445 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AF2641_08450 PF00768 D-alanyl-D-alanine carboxypeptidase AF2641_08450 PF07943 Penicillin-binding protein 5, C-terminal domain AF2641_08455 PF01740 STAS domain AF2641_08460 PF13581 Histidine kinase-like ATPase domain AF2641_08465 PF04545 Sigma-70, region 4 AF2641_08465 PF04542 Sigma-70 region 2 AF2641_08465 PF04539 Sigma-70 region 3 AF2641_08470 PF12164 Stage V sporulation protein AA AF2641_08475 PF13782 Stage V sporulation protein AB AF2641_08485 PF07451 Stage V sporulation protein AD (SpoVAD) AF2641_08490 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AF2641_08495 PF14097 Stage V sporulation protein AE1 AF2641_08500 PF03323 Bacillus/Clostridium GerA spore germination protein AF2641_08505 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AF2641_08505 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AF2641_08510 PF06207 Protein of unknown function (DUF1002) AF2641_08515 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AF2641_08520 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AF2641_08520 PF01872 RibD C-terminal domain AF2641_08525 PF00677 Lumazine binding domain AF2641_08530 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AF2641_08530 PF00925 GTP cyclohydrolase II AF2641_08535 PF00885 6,7-dimethyl-8-ribityllumazine synthase AF2641_08545 PF03745 Domain of unknown function (DUF309) AF2641_08550 PF02616 Segregation and condensation protein ScpA AF2641_08555 PF04079 Segregation and condensation complex subunit ScpB AF2641_08575 PF18603 L-amino acid ligase C-terminal domain 2 AF2641_08575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AF2641_08580 PF07478 D-ala D-ala ligase C-terminus AF2641_08580 PF01820 D-ala D-ala ligase N-terminus AF2641_08585 PF01022 Bacterial regulatory protein, arsR family AF2641_08600 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AF2641_08600 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AF2641_08605 PF07943 Penicillin-binding protein 5, C-terminal domain AF2641_08605 PF00768 D-alanyl-D-alanine carboxypeptidase AF2641_08610 PF07670 Nucleoside recognition AF2641_08615 PF07670 Nucleoside recognition AF2641_08625 PF00849 RNA pseudouridylate synthase AF2641_08625 PF01479 S4 domain AF2641_08630 PF00578 AhpC/TSA family AF2641_08635 PF05140 ResB-like family AF2641_08640 PF01578 Cytochrome C assembly protein AF2641_08645 PF00072 Response regulator receiver domain AF2641_08645 PF00486 Transcriptional regulatory protein, C terminal AF2641_08650 PF00672 HAMP domain AF2641_08650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_08650 PF18698 Histidine kinase sensor domain AF2641_08650 PF00512 His Kinase A (phospho-acceptor) domain AF2641_08650 PF00989 PAS fold AF2641_08655 PF01497 Periplasmic binding protein AF2641_08660 PF01032 FecCD transport family AF2641_08665 PF00005 ABC transporter AF2641_08670 PF03186 CobD/Cbib protein AF2641_08675 PF00155 Aminotransferase class I and II AF2641_08685 PF02654 Cobalamin-5-phosphate synthase AF2641_08700 PF01923 Cobalamin adenosyltransferase AF2641_08720 PF02811 PHP domain AF2641_08725 PF01842 ACT domain AF2641_08725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AF2641_08725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AF2641_08730 PF00719 Inorganic pyrophosphatase AF2641_08740 PF14493 Helix-turn-helix domain AF2641_08745 PF00271 Helicase conserved C-terminal domain AF2641_08745 PF00270 DEAD/DEAH box helicase AF2641_08750 PF02517 CPBP intramembrane metalloprotease AF2641_08760 PF10864 Protein of unknown function (DUF2663) AF2641_08765 PF05067 Manganese containing catalase AF2641_08770 PF12652 CotJB protein AF2641_08775 PF11007 Spore coat associated protein JA (CotJA) AF2641_08785 PF00149 Calcineurin-like phosphoesterase AF2641_08790 PF13411 MerR HTH family regulatory protein AF2641_08795 PF05389 Negative regulator of genetic competence (MecA) AF2641_08800 PF02585 GlcNAc-PI de-N-acetylase AF2641_08805 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AF2641_08805 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AF2641_08820 PF00202 Aminotransferase class-III AF2641_08825 PF03413 Peptidase propeptide and YPEB domain AF2641_08825 PF14620 YpeB sporulation AF2641_08830 PF07486 Cell Wall Hydrolase AF2641_08830 PF01471 Putative peptidoglycan binding domain AF2641_08835 PF13367 PrsW family intramembrane metalloprotease AF2641_08840 PF07238 PilZ domain AF2641_08840 PF12945 Flagellar protein YcgR AF2641_08850 PF02224 Cytidylate kinase AF2641_08855 PF01553 Acyltransferase AF2641_08860 PF00575 S1 RNA binding domain AF2641_08865 PF01070 FMN-dependent dehydrogenase AF2641_08870 PF14140 YpzI-like protein AF2641_08880 PF14045 YIEGIA protein AF2641_08890 PF01926 50S ribosome-binding GTPase AF2641_08890 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AF2641_08895 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AF2641_08895 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AF2641_08900 PF10966 Protein of unknown function (DUF2768) AF2641_08910 PF09547 Stage IV sporulation protein A (spore_IV_A) AF2641_08915 PF00216 Bacterial DNA-binding protein AF2641_08920 PF01227 GTP cyclohydrolase I AF2641_08925 PF02081 Tryptophan RNA-binding attenuator protein AF2641_08930 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 AF2641_08935 PF01209 ubiE/COQ5 methyltransferase family AF2641_08940 PF00348 Polyprenyl synthetase AF2641_08945 PF00334 Nucleoside diphosphate kinase AF2641_08950 PF03705 CheR methyltransferase, all-alpha domain AF2641_08950 PF01739 CheR methyltransferase, SAM binding domain AF2641_08955 PF01264 Chorismate synthase AF2641_08960 PF01761 3-dehydroquinate synthase AF2641_08965 PF07736 Chorismate mutase type I AF2641_08970 PF00425 chorismate binding enzyme AF2641_08970 PF04715 Anthranilate synthase component I, N terminal region AF2641_08975 PF00591 Glycosyl transferase family, a/b domain AF2641_08975 PF02885 Glycosyl transferase family, helical bundle domain AF2641_08980 PF00218 Indole-3-glycerol phosphate synthase AF2641_08985 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AF2641_08990 PF00291 Pyridoxal-phosphate dependent enzyme AF2641_08995 PF00290 Tryptophan synthase alpha chain AF2641_09000 PF00155 Aminotransferase class I and II AF2641_09005 PF02153 Prephenate dehydrogenase AF2641_09005 PF01842 ACT domain AF2641_09010 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AF2641_09020 PF08858 IDEAL domain AF2641_09020 PF08864 UPF0302 domain AF2641_09025 PF10673 Protein of unknown function (DUF2487) AF2641_09030 PF00355 Rieske [2Fe-2S] domain AF2641_09035 PF00033 Cytochrome b/b6/petB AF2641_09040 PF00032 Cytochrome b(C-terminal)/b6/petD AF2641_09040 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AF2641_09045 PF07187 Protein of unknown function (DUF1405) AF2641_09050 PF09577 Sporulation protein YpjB (SpoYpjB) AF2641_09055 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AF2641_09055 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AF2641_09060 PF03819 MazG nucleotide pyrophosphohydrolase domain AF2641_09065 PF05173 Dihydrodipicolinate reductase, C-terminus AF2641_09065 PF01113 Dihydrodipicolinate reductase, N-terminus AF2641_09070 PF02142 MGS-like domain AF2641_09075 PF02585 GlcNAc-PI de-N-acetylase AF2641_09080 PF00534 Glycosyl transferases group 1 AF2641_09080 PF13439 Glycosyltransferase Family 4 AF2641_09085 PF12627 Probable RNA and SrmB- binding site of polymerase A AF2641_09085 PF01743 Poly A polymerase head domain AF2641_09085 PF13735 tRNA nucleotidyltransferase domain 2 putative AF2641_09090 PF02237 Biotin protein ligase C terminal domain AF2641_09090 PF08279 HTH domain AF2641_09090 PF03099 Biotin/lipoate A/B protein ligase family AF2641_09095 PF02548 Ketopantoate hydroxymethyltransferase AF2641_09100 PF02569 Pantoate-beta-alanine ligase AF2641_09105 PF02261 Aspartate decarboxylase AF2641_09110 PF04851 Type III restriction enzyme, res subunit AF2641_09110 PF00929 Exonuclease AF2641_09110 PF13307 Helicase C-terminal domain AF2641_09120 PF14084 Protein of unknown function (DUF4264) AF2641_09130 PF00155 Aminotransferase class I and II AF2641_09135 PF01336 OB-fold nucleic acid binding domain AF2641_09135 PF00152 tRNA synthetases class II (D, K and N) AF2641_09140 PF07261 Replication initiation and membrane attachment AF2641_09145 PF00633 Helix-hairpin-helix motif AF2641_09145 PF00730 HhH-GPD superfamily base excision DNA repair protein AF2641_09145 PF10576 Iron-sulfur binding domain of endonuclease III AF2641_09155 PF00912 Transglycosylase AF2641_09155 PF00905 Penicillin binding protein transpeptidase domain AF2641_09160 PF03838 Recombination protein U AF2641_09195 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AF2641_09195 PF01266 FAD dependent oxidoreductase AF2641_09200 PF12787 EcsC protein family AF2641_09205 PF00011 Hsp20/alpha crystallin family AF2641_09220 PF00990 Diguanylate cyclase, GGDEF domain AF2641_09220 PF07694 5TMR of 5TMR-LYT AF2641_09225 PF02073 Thermophilic metalloprotease (M29) AF2641_09235 PF02595 Glycerate kinase family AF2641_09240 PF00990 Diguanylate cyclase, GGDEF domain AF2641_09240 PF03707 Bacterial signalling protein N terminal repeat AF2641_09240 PF00563 EAL domain AF2641_09245 PF00005 ABC transporter AF2641_09250 PF01497 Periplasmic binding protein AF2641_09255 PF01032 FecCD transport family AF2641_09260 PF01032 FecCD transport family AF2641_09265 PF00155 Aminotransferase class I and II AF2641_09270 PF00561 alpha/beta hydrolase fold AF2641_09275 PF13847 Methyltransferase domain AF2641_09280 PF02675 S-adenosylmethionine decarboxylase AF2641_09285 PF00999 Sodium/hydrogen exchanger family AF2641_09285 PF02254 TrkA-N domain AF2641_09285 PF02080 TrkA-C domain AF2641_09300 PF00072 Response regulator receiver domain AF2641_09300 PF00486 Transcriptional regulatory protein, C terminal AF2641_09305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_09305 PF18719 ArlS sensor domain AF2641_09305 PF00512 His Kinase A (phospho-acceptor) domain AF2641_09310 PF00145 C-5 cytosine-specific DNA methylase AF2641_09310 PF13411 MerR HTH family regulatory protein AF2641_09315 PF00106 short chain dehydrogenase AF2641_09330 PF12323 Helix-turn-helix domain AF2641_09330 PF01385 Probable transposase AF2641_09330 PF07282 Putative transposase DNA-binding domain AF2641_09365 PF00266 Aminotransferase class-V AF2641_09420 PF01546 Peptidase family M20/M25/M40 AF2641_09420 PF07687 Peptidase dimerisation domain AF2641_09440 PF00141 Peroxidase AF2641_09445 PF02673 Bacitracin resistance protein BacA AF2641_09450 PF00248 Aldo/keto reductase family AF2641_09455 PF01522 Polysaccharide deacetylase AF2641_09470 PF00251 Glycosyl hydrolases family 32 N-terminal domain AF2641_09470 PF08244 Glycosyl hydrolases family 32 C terminal AF2641_09500 PF00512 His Kinase A (phospho-acceptor) domain AF2641_09500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_09500 PF00672 HAMP domain AF2641_09505 PF00486 Transcriptional regulatory protein, C terminal AF2641_09505 PF00072 Response regulator receiver domain AF2641_09520 PF02583 Metal-sensitive transcriptional repressor AF2641_09525 PF00403 Heavy-metal-associated domain AF2641_09530 PF00403 Heavy-metal-associated domain AF2641_09555 PF00403 Heavy-metal-associated domain AF2641_09560 PF00394 Multicopper oxidase AF2641_09560 PF07732 Multicopper oxidase AF2641_09560 PF07731 Multicopper oxidase AF2641_09565 PF00733 Asparagine synthase AF2641_09565 PF13537 Glutamine amidotransferase domain AF2641_09585 PF00171 Aldehyde dehydrogenase family AF2641_09600 PF04138 GtrA-like protein AF2641_09605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AF2641_09605 PF03466 LysR substrate binding domain AF2641_09610 PF01493 GXGXG motif AF2641_09610 PF01645 Conserved region in glutamate synthase AF2641_09610 PF04898 Glutamate synthase central domain AF2641_09610 PF00310 Glutamine amidotransferases class-II AF2641_09615 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF2641_09615 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AF2641_09625 PF00920 Dehydratase family AF2641_09635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF2641_09635 PF02770 Acyl-CoA dehydrogenase, middle domain AF2641_09635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF2641_09640 PF02515 CoA-transferase family III AF2641_09645 PF00202 Aminotransferase class-III AF2641_09650 PF00171 Aldehyde dehydrogenase family AF2641_09655 PF13520 Amino acid permease AF2641_09660 PF00205 Thiamine pyrophosphate enzyme, central domain AF2641_09660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AF2641_09660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF2641_09665 PF00171 Aldehyde dehydrogenase family AF2641_09670 PF03435 Saccharopine dehydrogenase NADP binding domain AF2641_09670 PF16653 Saccharopine dehydrogenase C-terminal domain AF2641_09675 PF01012 Electron transfer flavoprotein domain AF2641_09680 PF00766 Electron transfer flavoprotein FAD-binding domain AF2641_09680 PF01012 Electron transfer flavoprotein domain AF2641_09705 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AF2641_09705 PF01367 5'-3' exonuclease, C-terminal SAM fold AF2641_09715 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AF2641_09720 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AF2641_09720 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AF2641_09725 PF00082 Subtilase family AF2641_09750 PF01367 5'-3' exonuclease, C-terminal SAM fold AF2641_09750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AF2641_09755 PF00171 Aldehyde dehydrogenase family AF2641_09760 PF01472 PUA domain AF2641_09760 PF00696 Amino acid kinase family AF2641_09770 PF13732 Domain of unknown function (DUF4162) AF2641_09770 PF00005 ABC transporter AF2641_09790 PF13193 AMP-binding enzyme C-terminal domain AF2641_09790 PF00501 AMP-binding enzyme AF2641_09795 PF09278 MerR, DNA binding AF2641_09795 PF00376 MerR family regulatory protein AF2641_09800 PF00501 AMP-binding enzyme AF2641_09800 PF13193 AMP-binding enzyme C-terminal domain AF2641_09805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF2641_09805 PF02770 Acyl-CoA dehydrogenase, middle domain AF2641_09805 PF18158 Adaptive response protein AidB N-terminal domain AF2641_09810 PF03006 Haemolysin-III related AF2641_09840 PF13520 Amino acid permease AF2641_09845 PF01297 Zinc-uptake complex component A periplasmic AF2641_09850 PF00005 ABC transporter AF2641_09855 PF00950 ABC 3 transport family AF2641_09860 PF00950 ABC 3 transport family AF2641_09865 PF07690 Major Facilitator Superfamily AF2641_09880 PF05816 Toxic anion resistance protein (TelA) AF2641_09890 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AF2641_09890 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF2641_09900 PF07690 Major Facilitator Superfamily AF2641_09905 PF02386 Cation transport protein AF2641_09915 PF00672 HAMP domain AF2641_09915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_09915 PF17202 Single cache domain 3 AF2641_09925 PF02743 Cache domain AF2641_09925 PF06580 Histidine kinase AF2641_09925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_09925 PF00672 HAMP domain AF2641_09930 PF04397 LytTr DNA-binding domain AF2641_09930 PF00072 Response regulator receiver domain AF2641_09935 PF13407 Periplasmic binding protein domain AF2641_09940 PF00005 ABC transporter AF2641_09945 PF02653 Branched-chain amino acid transport system / permease component AF2641_09950 PF13458 Periplasmic binding protein AF2641_09955 PF02653 Branched-chain amino acid transport system / permease component AF2641_09960 PF11862 Domain of unknown function (DUF3382) AF2641_09960 PF02653 Branched-chain amino acid transport system / permease component AF2641_09965 PF12399 Branched-chain amino acid ATP-binding cassette transporter AF2641_09965 PF00005 ABC transporter AF2641_09970 PF00005 ABC transporter AF2641_09975 PF13378 Enolase C-terminal domain-like AF2641_09975 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AF2641_09985 PF07293 Protein of unknown function (DUF1450) AF2641_10010 PF00583 Acetyltransferase (GNAT) family AF2641_10015 PF00795 Carbon-nitrogen hydrolase AF2641_10015 PF00583 Acetyltransferase (GNAT) family AF2641_10020 PF00255 Glutathione peroxidase AF2641_10025 PF01636 Phosphotransferase enzyme family AF2641_10030 PF13439 Glycosyltransferase Family 4 AF2641_10030 PF00534 Glycosyl transferases group 1 AF2641_10040 PF00005 ABC transporter AF2641_10040 PF00664 ABC transporter transmembrane region AF2641_10045 PF00664 ABC transporter transmembrane region AF2641_10045 PF00005 ABC transporter AF2641_10050 PF12706 Beta-lactamase superfamily domain AF2641_10065 PF00909 Ammonium Transporter Family AF2641_10075 PF00929 Exonuclease AF2641_10075 PF04851 Type III restriction enzyme, res subunit AF2641_10075 PF13307 Helicase C-terminal domain AF2641_10080 PF01022 Bacterial regulatory protein, arsR family AF2641_10085 PF00403 Heavy-metal-associated domain AF2641_10090 PF03707 Bacterial signalling protein N terminal repeat AF2641_10090 PF00563 EAL domain AF2641_10090 PF00990 Diguanylate cyclase, GGDEF domain AF2641_10110 PF00005 ABC transporter AF2641_10115 PF00300 Histidine phosphatase superfamily (branch 1) AF2641_10120 PF00565 Staphylococcal nuclease homologue AF2641_10120 PF05901 Excalibur calcium-binding domain AF2641_10125 PF03063 Prismane/CO dehydrogenase family AF2641_10130 PF02110 Hydroxyethylthiazole kinase family AF2641_10135 PF02581 Thiamine monophosphate synthase AF2641_10140 PF00378 Enoyl-CoA hydratase/isomerase AF2641_10145 PF13426 PAS domain AF2641_10145 PF07228 Stage II sporulation protein E (SpoIIE) AF2641_10165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_10170 PF11122 Inner spore coat protein D AF2641_10175 PF05103 DivIVA protein AF2641_10185 PF00990 Diguanylate cyclase, GGDEF domain AF2641_10185 PF00563 EAL domain AF2641_10185 PF03707 Bacterial signalling protein N terminal repeat AF2641_10190 PF01170 Putative RNA methylase family UPF0020 AF2641_10190 PF02926 THUMP domain AF2641_10195 PF13307 Helicase C-terminal domain AF2641_10200 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AF2641_10205 PF00115 Cytochrome C and Quinol oxidase polypeptide I AF2641_10210 PF09125 Cytochrome C oxidase subunit II, transmembrane AF2641_10210 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AF2641_10230 PF00195 Chalcone and stilbene synthases, N-terminal domain AF2641_10230 PF02797 Chalcone and stilbene synthases, C-terminal domain AF2641_10235 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AF2641_10240 PF00350 Dynamin family AF2641_10245 PF10752 Protein of unknown function (DUF2533) AF2641_10250 PF00578 AhpC/TSA family AF2641_10255 PF13040 Fur-regulated basic protein B AF2641_10260 PF08177 Small acid-soluble spore protein N family AF2641_10270 PF03061 Thioesterase superfamily AF2641_10275 PF01521 Iron-sulphur cluster biosynthesis AF2641_10290 PF01494 FAD binding domain AF2641_10295 PF04055 Radical SAM superfamily AF2641_10295 PF06968 Biotin and Thiamin Synthesis associated domain AF2641_10305 PF14162 YozD-like protein AF2641_10310 PF07070 SpoOM protein AF2641_10315 PF14191 YodL-like AF2641_10325 PF01048 Phosphorylase superfamily AF2641_10330 PF02557 D-alanyl-D-alanine carboxypeptidase AF2641_10340 PF13726 Na+-H+ antiporter family AF2641_10340 PF03553 Na+/H+ antiporter family AF2641_10345 PF16916 Dimerisation domain of Zinc Transporter AF2641_10345 PF01545 Cation efflux family AF2641_10350 PF00892 EamA-like transporter family AF2641_10365 PF01554 MatE AF2641_10370 PF01235 Sodium:alanine symporter family AF2641_10375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_10375 PF00989 PAS fold AF2641_10375 PF00512 His Kinase A (phospho-acceptor) domain AF2641_10380 PF10842 Protein of unknown function (DUF2642) AF2641_10385 PF05067 Manganese containing catalase AF2641_10390 PF13291 ACT domain AF2641_10390 PF00291 Pyridoxal-phosphate dependent enzyme AF2641_10410 PF00392 Bacterial regulatory proteins, gntR family AF2641_10415 PF00005 ABC transporter AF2641_10425 PF12392 Collagenase AF2641_10425 PF01136 Peptidase family U32 AF2641_10435 PF00313 'Cold-shock' DNA-binding domain AF2641_10440 PF00120 Glutamine synthetase, catalytic domain AF2641_10440 PF03951 Glutamine synthetase, beta-Grasp domain AF2641_10450 PF00005 ABC transporter AF2641_10455 PF12679 ABC-2 family transporter protein AF2641_10460 PF00293 NUDIX domain AF2641_10475 PF01693 Caulimovirus viroplasmin AF2641_10480 PF07683 Cobalamin synthesis protein cobW C-terminal domain AF2641_10480 PF02492 CobW/HypB/UreG, nucleotide-binding domain AF2641_10485 PF01022 Bacterial regulatory protein, arsR family AF2641_10490 PF02040 Arsenical pump membrane protein AF2641_10495 PF01451 Low molecular weight phosphotyrosine protein phosphatase AF2641_10505 PF00005 ABC transporter AF2641_10505 PF00664 ABC transporter transmembrane region AF2641_10520 PF00005 ABC transporter AF2641_10540 PF13411 MerR HTH family regulatory protein AF2641_10555 PF00403 Heavy-metal-associated domain AF2641_10560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AF2641_10560 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF2641_10560 PF00403 Heavy-metal-associated domain AF2641_10565 PF01751 Toprim domain AF2641_10565 PF01131 DNA topoisomerase AF2641_10580 PF01235 Sodium:alanine symporter family AF2641_10585 PF00092 von Willebrand factor type A domain AF2641_10590 PF07728 AAA domain (dynein-related subfamily) AF2641_10595 PF02583 Metal-sensitive transcriptional repressor AF2641_10600 PF02334 Replication terminator protein AF2641_10605 PF01842 ACT domain AF2641_10605 PF00551 Formyl transferase AF2641_10610 PF01226 Formate/nitrite transporter AF2641_10615 PF17284 Spermidine synthase tetramerisation domain AF2641_10620 PF00471 Ribosomal protein L33 AF2641_10625 PF07702 UTRA domain AF2641_10625 PF00392 Bacterial regulatory proteins, gntR family AF2641_10630 PF16657 Maltogenic Amylase, C-terminal domain AF2641_10630 PF00128 Alpha amylase, catalytic domain AF2641_10635 PF02378 Phosphotransferase system, EIIC AF2641_10635 PF00367 phosphotransferase system, EIIB AF2641_10645 PF00521 DNA gyrase/topoisomerase IV, subunit A AF2641_10645 PF03989 DNA gyrase C-terminal domain, beta-propeller AF2641_10650 PF00986 DNA gyrase B subunit, carboxyl terminus AF2641_10650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_10650 PF01751 Toprim domain AF2641_10650 PF00204 DNA gyrase B AF2641_10655 PF13380 CoA binding domain AF2641_10660 PF02660 Glycerol-3-phosphate acyltransferase AF2641_10665 PF01189 16S rRNA methyltransferase RsmB/F AF2641_10665 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AF2641_10665 PF17126 RsmF rRNA methyltransferase first C-terminal domain AF2641_10675 PF13472 GDSL-like Lipase/Acylhydrolase family AF2641_10680 PF02630 SCO1/SenC AF2641_10685 PF02645 Uncharacterised protein, DegV family COG1307 AF2641_10690 PF10751 Protein of unknown function (DUF2535) AF2641_10695 PF00291 Pyridoxal-phosphate dependent enzyme AF2641_10695 PF00585 C-terminal regulatory domain of Threonine dehydratase AF2641_10700 PF00186 Dihydrofolate reductase AF2641_10705 PF00303 Thymidylate synthase AF2641_10710 PF00586 AIR synthase related protein, N-terminal domain AF2641_10710 PF02769 AIR synthase related protein, C-terminal domain AF2641_10715 PF01924 Hydrogenase formation hypA family AF2641_10720 PF01455 HupF/HypC family AF2641_10725 PF07503 HypF finger AF2641_10725 PF00708 Acylphosphatase AF2641_10725 PF17788 HypF Kae1-like domain AF2641_10725 PF01300 Telomere recombination AF2641_10730 PF02492 CobW/HypB/UreG, nucleotide-binding domain AF2641_10735 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AF2641_10745 PF01750 Hydrogenase maturation protease AF2641_10750 PF01292 Prokaryotic cytochrome b561 AF2641_10755 PF00374 Nickel-dependent hydrogenase AF2641_10760 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AF2641_10760 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AF2641_10765 PF00902 Sec-independent protein translocase protein (TatC) AF2641_10770 PF02416 mttA/Hcf106 family AF2641_10780 PF00375 Sodium:dicarboxylate symporter family AF2641_10790 PF04445 Putative SAM-dependent methyltransferase AF2641_10795 PF06491 Disulphide isomerase AF2641_10800 PF04204 Homoserine O-succinyltransferase AF2641_10805 PF07690 Major Facilitator Superfamily AF2641_10815 PF01209 ubiE/COQ5 methyltransferase family AF2641_10820 PF03737 Aldolase/RraA AF2641_10835 PF08447 PAS fold AF2641_10835 PF13426 PAS domain AF2641_10835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_10840 PF02602 Uroporphyrinogen-III synthase HemD AF2641_10845 PF00989 PAS fold AF2641_10845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_10845 PF13426 PAS domain AF2641_10845 PF00512 His Kinase A (phospho-acceptor) domain AF2641_10845 PF13188 PAS domain AF2641_10850 PF00258 Flavodoxin AF2641_10855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AF2641_10855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AF2641_10860 PF00294 pfkB family carbohydrate kinase AF2641_10875 PF00072 Response regulator receiver domain AF2641_10875 PF01966 HD domain AF2641_10880 PF17248 Family of unknown function (DUF5317) AF2641_10885 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AF2641_10885 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AF2641_10890 PF04309 Glycerol-3-phosphate responsive antiterminator AF2641_10895 PF01894 Uncharacterised protein family UPF0047 AF2641_10905 PF00313 'Cold-shock' DNA-binding domain AF2641_10925 PF02592 Putative vitamin uptake transporter AF2641_10935 PF02681 Divergent PAP2 family AF2641_10945 PF00330 Aconitase family (aconitate hydratase) AF2641_10945 PF00694 Aconitase C-terminal domain AF2641_10960 PF08179 Small acid-soluble spore protein P family AF2641_10965 PF11084 Protein of unknown function (DUF2621) AF2641_10970 PF07301 Protein of unknown function (DUF1453) AF2641_10975 PF00072 Response regulator receiver domain AF2641_10980 PF02683 Cytochrome C biogenesis protein transmembrane region AF2641_10985 PF03672 Uncharacterised protein family (UPF0154) AF2641_10990 PF02780 Transketolase, C-terminal domain AF2641_10990 PF00456 Transketolase, thiamine diphosphate binding domain AF2641_10990 PF02779 Transketolase, pyrimidine binding domain AF2641_10995 PF05979 Bacterial protein of unknown function (DUF896) AF2641_11000 PF00239 Resolvase, N terminal domain AF2641_11005 PF01476 LysM domain AF2641_11010 PF00717 Peptidase S24-like AF2641_11010 PF01726 LexA DNA binding domain AF2641_11015 PF03951 Glutamine synthetase, beta-Grasp domain AF2641_11015 PF00120 Glutamine synthetase, catalytic domain AF2641_11020 PF13411 MerR HTH family regulatory protein AF2641_11025 PF06838 Methionine gamma-lyase AF2641_11030 PF01926 50S ribosome-binding GTPase AF2641_11030 PF16360 GTP-binding GTPase Middle Region AF2641_11030 PF13167 GTP-binding GTPase N-terminal AF2641_11035 PF03458 UPF0126 domain AF2641_11040 PF00108 Thiolase, N-terminal domain AF2641_11040 PF02803 Thiolase, C-terminal domain AF2641_11045 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF2641_11045 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF2641_11050 PF00501 AMP-binding enzyme AF2641_11050 PF13193 AMP-binding enzyme C-terminal domain AF2641_11060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF2641_11060 PF02770 Acyl-CoA dehydrogenase, middle domain AF2641_11060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF2641_11065 PF00501 AMP-binding enzyme AF2641_11065 PF13193 AMP-binding enzyme C-terminal domain AF2641_11070 PF17866 AAA lid domain AF2641_11070 PF00004 ATPase family associated with various cellular activities (AAA) AF2641_11075 PF17209 Hfq protein AF2641_11085 PF08676 MutL C terminal dimerisation domain AF2641_11085 PF01119 DNA mismatch repair protein, C-terminal domain AF2641_11090 PF05192 MutS domain III AF2641_11090 PF01624 MutS domain I AF2641_11090 PF00488 MutS domain V AF2641_11090 PF05190 MutS family domain IV AF2641_11090 PF05188 MutS domain II AF2641_11095 PF10628 Outer spore coat protein E (CotE) AF2641_11100 PF06133 Control of competence regulator ComK, YlbF/YmcA AF2641_11105 PF01938 TRAM domain AF2641_11105 PF04055 Radical SAM superfamily AF2641_11105 PF00919 Uncharacterized protein family UPF0004 AF2641_11110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF2641_11115 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AF2641_11115 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AF2641_11115 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AF2641_11120 PF01244 Membrane dipeptidase (Peptidase family M19) AF2641_11125 PF04232 Stage V sporulation protein S (SpoVS) AF2641_11130 PF13277 YmdB-like protein AF2641_11135 PF12072 Domain of unknown function (DUF3552) AF2641_11135 PF01966 HD domain AF2641_11135 PF00013 KH domain AF2641_11140 PF00154 recA bacterial DNA recombination protein AF2641_11145 PF02464 Competence-damaged protein AF2641_11145 PF00994 Probable molybdopterin binding domain AF2641_11145 PF18146 Damage-inducible protein CinA KH domain AF2641_11150 PF01066 CDP-alcohol phosphatidyltransferase AF2641_11155 PF13464 Domain of unknown function (DUF4115) AF2641_11160 PF11868 Protein of unknown function (DUF3388) AF2641_11165 PF11588 Protein of unknown function (DUF3243) AF2641_11175 PF05193 Peptidase M16 inactive domain AF2641_11175 PF00675 Insulinase (Peptidase family M16) AF2641_11180 PF05193 Peptidase M16 inactive domain AF2641_11185 PF00291 Pyridoxal-phosphate dependent enzyme AF2641_11200 PF02096 60Kd inner membrane protein AF2641_11210 PF00781 Diacylglycerol kinase catalytic domain AF2641_11215 PF10057 Uncharacterized conserved protein (DUF2294) AF2641_11230 PF01266 FAD dependent oxidoreductase AF2641_11240 PF13685 Iron-containing alcohol dehydrogenase AF2641_11260 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AF2641_11270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_11270 PF00989 PAS fold AF2641_11270 PF00512 His Kinase A (phospho-acceptor) domain AF2641_11285 PF01022 Bacterial regulatory protein, arsR family AF2641_11295 PF08125 Mannitol dehydrogenase C-terminal domain AF2641_11295 PF01232 Mannitol dehydrogenase Rossmann domain AF2641_11300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AF2641_11305 PF00874 PRD domain AF2641_11305 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AF2641_11305 PF08279 HTH domain AF2641_11305 PF05043 Mga helix-turn-helix domain AF2641_11305 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AF2641_11310 PF02378 Phosphotransferase system, EIIC AF2641_11310 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AF2641_11315 PF00188 Cysteine-rich secretory protein family AF2641_11325 PF01614 Bacterial transcriptional regulator AF2641_11325 PF09339 IclR helix-turn-helix domain AF2641_11330 PF01274 Malate synthase AF2641_11335 PF00440 Bacterial regulatory proteins, tetR family AF2641_11335 PF13977 BetI-type transcriptional repressor, C-terminal AF2641_11345 PF13732 Domain of unknown function (DUF4162) AF2641_11345 PF00005 ABC transporter AF2641_11360 PF07486 Cell Wall Hydrolase AF2641_11365 PF01814 Hemerythrin HHE cation binding domain AF2641_11365 PF04405 Domain of Unknown function (DUF542) AF2641_11370 PF01047 MarR family AF2641_11375 PF07681 DoxX AF2641_11380 PF02678 Pirin AF2641_11380 PF17954 Quercetinase C-terminal cupin domain AF2641_11390 PF07690 Major Facilitator Superfamily AF2641_11395 PF01268 Formate--tetrahydrofolate ligase AF2641_11400 PF00248 Aldo/keto reductase family AF2641_11405 PF10086 YhfC intramembrane metalloprotease AF2641_11410 PF07853 Protein of unknown function (DUF1648) AF2641_11410 PF13630 SdpI/YhfL protein family AF2641_11415 PF01022 Bacterial regulatory protein, arsR family AF2641_11420 PF01906 Putative heavy-metal-binding AF2641_11425 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AF2641_11425 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AF2641_11430 PF00175 Oxidoreductase NAD-binding domain AF2641_11430 PF00258 Flavodoxin AF2641_11430 PF00667 FAD binding domain AF2641_11435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AF2641_11435 PF03466 LysR substrate binding domain AF2641_11445 PF02146 Sir2 family AF2641_11455 PF00171 Aldehyde dehydrogenase family AF2641_11465 PF00753 Metallo-beta-lactamase superfamily AF2641_11465 PF16123 Hydroxyacylglutathione hydrolase C-terminus AF2641_11480 PF13614 AAA domain AF2641_11490 PF00578 AhpC/TSA family AF2641_11495 PF04134 Protein of unknown function, DUF393 AF2641_11510 PF08712 Scaffold protein Nfu/NifU N terminal AF2641_11510 PF13769 Virulence factor AF2641_11540 PF00005 ABC transporter AF2641_11570 PF06039 Malate:quinone oxidoreductase (Mqo) AF2641_11595 PF00916 Sulfate permease family AF2641_11595 PF01740 STAS domain AF2641_11605 PF00582 Universal stress protein family AF2641_11610 PF09587 Bacterial capsule synthesis protein PGA_cap AF2641_11620 PF12729 Four helix bundle sensory module for signal transduction AF2641_11620 PF00672 HAMP domain AF2641_11620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_11625 PF00474 Sodium:solute symporter family AF2641_11630 PF01619 Proline dehydrogenase AF2641_11635 PF00171 Aldehyde dehydrogenase family AF2641_11640 PF17853 GGDEF-like domain AF2641_11640 PF13556 PucR C-terminal helix-turn-helix domain AF2641_11665 PF00392 Bacterial regulatory proteins, gntR family AF2641_11665 PF07702 UTRA domain AF2641_11670 PF17854 FtsK alpha domain AF2641_11670 PF09397 Ftsk gamma domain AF2641_11670 PF01580 FtsK/SpoIIIE family AF2641_11680 PF00574 Clp protease AF2641_11685 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AF2641_11685 PF17770 Ribonuclease J C-terminal domain AF2641_11685 PF00753 Metallo-beta-lactamase superfamily AF2641_11690 PF00701 Dihydrodipicolinate synthetase family AF2641_11695 PF00696 Amino acid kinase family AF2641_11695 PF13840 ACT domain AF2641_11700 PF01118 Semialdehyde dehydrogenase, NAD binding domain AF2641_11700 PF02774 Semialdehyde dehydrogenase, dimerisation domain AF2641_11705 PF02441 Flavoprotein AF2641_11710 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AF2641_11710 PF16924 Dipicolinate synthase subunit A N-terminal domain AF2641_11715 PF05239 PRC-barrel domain AF2641_11720 PF00675 Insulinase (Peptidase family M16) AF2641_11720 PF05193 Peptidase M16 inactive domain AF2641_11725 PF01522 Polysaccharide deacetylase AF2641_11730 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AF2641_11730 PF00575 S1 RNA binding domain AF2641_11730 PF03725 3' exoribonuclease family, domain 2 AF2641_11730 PF01138 3' exoribonuclease family, domain 1 AF2641_11730 PF00013 KH domain AF2641_11735 PF00312 Ribosomal protein S15 AF2641_11740 PF06574 FAD synthetase AF2641_11740 PF01687 Riboflavin kinase AF2641_11745 PF16198 tRNA pseudouridylate synthase B C-terminal domain AF2641_11745 PF01509 TruB family pseudouridylate synthase (N terminal domain) AF2641_11750 PF02033 Ribosome-binding factor A AF2641_11755 PF04456 Protein of unknown function (DUF503) AF2641_11760 PF11987 Translation-initiation factor 2 AF2641_11760 PF00009 Elongation factor Tu GTP binding domain AF2641_11760 PF04760 Translation initiation factor IF-2, N-terminal region AF2641_11765 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AF2641_11770 PF04296 Protein of unknown function (DUF448) AF2641_11775 PF00575 S1 RNA binding domain AF2641_11775 PF13184 NusA-like KH domain AF2641_11775 PF08529 NusA N-terminal domain AF2641_11780 PF17384 RimP C-terminal SH3 domain AF2641_11780 PF02576 RimP N-terminal domain AF2641_11790 PF04073 Aminoacyl-tRNA editing domain AF2641_11790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AF2641_11790 PF03129 Anticodon binding domain AF2641_11795 PF13180 PDZ domain AF2641_11795 PF02163 Peptidase family M50 AF2641_11800 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AF2641_11800 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AF2641_11800 PF13288 DXP reductoisomerase C-terminal domain AF2641_11810 PF01255 Putative undecaprenyl diphosphate synthase AF2641_11815 PF01765 Ribosome recycling factor AF2641_11820 PF00696 Amino acid kinase family AF2641_11825 PF00889 Elongation factor TS AF2641_11830 PF00318 Ribosomal protein S2 AF2641_11845 PF04539 Sigma-70 region 3 AF2641_11845 PF04545 Sigma-70, region 4 AF2641_11845 PF04542 Sigma-70 region 2 AF2641_11855 PF03975 CheD chemotactic sensory transduction AF2641_11860 PF04509 CheC-like family AF2641_11865 PF01584 CheW-like domain AF2641_11870 PF02895 Signal transducing histidine kinase, homodimeric domain AF2641_11870 PF01584 CheW-like domain AF2641_11870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_11870 PF01627 Hpt domain AF2641_11870 PF07194 P2 response regulator binding domain AF2641_11875 PF00072 Response regulator receiver domain AF2641_11875 PF01339 CheB methylesterase AF2641_11880 PF10609 NUBPL iron-transfer P-loop NTPase AF2641_11885 PF00448 SRP54-type protein, GTPase domain AF2641_11890 PF00771 FHIPEP family AF2641_11895 PF01312 FlhB HrpN YscU SpaS Family AF2641_11900 PF01311 Bacterial export proteins, family 1 AF2641_11905 PF01313 Bacterial export proteins, family 3 AF2641_11910 PF00813 FliP family AF2641_11915 PF04347 Flagellar biosynthesis protein, FliO AF2641_11920 PF00072 Response regulator receiver domain AF2641_11925 PF04509 CheC-like family AF2641_11925 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AF2641_11930 PF02154 Flagellar motor switch protein FliM AF2641_11930 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AF2641_11935 PF03748 Flagellar basal body-associated protein FliL AF2641_11940 PF06289 Flagellar and Swarming motility proteins AF2641_11945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AF2641_11945 PF00460 Flagella basal body rod protein AF2641_11955 PF03963 Flagellar hook capping protein - N-terminal region AF2641_11960 PF02120 Flagellar hook-length control protein FliK AF2641_11970 PF02050 Flagellar FliJ protein AF2641_11975 PF18269 T3SS EscN ATPase C-terminal domain AF2641_11975 PF02874 ATP synthase alpha/beta family, beta-barrel domain AF2641_11975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AF2641_11980 PF02108 Flagellar assembly protein FliH AF2641_11985 PF01706 FliG C-terminal domain AF2641_11985 PF14841 FliG middle domain AF2641_11985 PF14842 FliG N-terminal domain AF2641_11990 PF01514 Secretory protein of YscJ/FliF family AF2641_11990 PF08345 Flagellar M-ring protein C-terminal AF2641_11995 PF02049 Flagellar hook-basal body complex protein FliE AF2641_12000 PF00460 Flagella basal body rod protein AF2641_12000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AF2641_12005 PF00460 Flagella basal body rod protein AF2641_12010 PF06018 CodY GAF-like domain AF2641_12010 PF08222 CodY helix-turn-helix domain AF2641_12015 PF10431 C-terminal, D2-small domain, of ClpB protein AF2641_12015 PF07724 AAA domain (Cdc48 subfamily) AF2641_12015 PF00004 ATPase family associated with various cellular activities (AAA) AF2641_12020 PF00227 Proteasome subunit AF2641_12025 PF00589 Phage integrase family AF2641_12025 PF02899 Phage integrase, N-terminal SAM-like domain AF2641_12030 PF01134 Glucose inhibited division protein A AF2641_12035 PF01751 Toprim domain AF2641_12035 PF01396 Topoisomerase DNA binding C4 zinc finger AF2641_12035 PF01131 DNA topoisomerase AF2641_12040 PF02481 DNA recombination-mediator protein A AF2641_12045 PF02629 CoA binding domain AF2641_12045 PF00549 CoA-ligase AF2641_12050 PF00549 CoA-ligase AF2641_12050 PF08442 ATP-grasp domain AF2641_12055 PF01312 FlhB HrpN YscU SpaS Family AF2641_12065 PF01351 Ribonuclease HII AF2641_12070 PF01926 50S ribosome-binding GTPase AF2641_12075 PF10502 Signal peptidase, peptidase S26 AF2641_12080 PF01245 Ribosomal protein L19 AF2641_12085 PF01746 tRNA (Guanine-1)-methyltransferase AF2641_12090 PF01782 RimM N-terminal domain AF2641_12090 PF05239 PRC-barrel domain AF2641_12095 PF11068 YlqD protein AF2641_12105 PF00886 Ribosomal protein S16 AF2641_12110 PF00448 SRP54-type protein, GTPase domain AF2641_12110 PF02978 Signal peptide binding domain AF2641_12110 PF02881 SRP54-type protein, helical bundle domain AF2641_12115 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AF2641_12120 PF00448 SRP54-type protein, GTPase domain AF2641_12120 PF02881 SRP54-type protein, helical bundle domain AF2641_12125 PF06470 SMC proteins Flexible Hinge Domain AF2641_12125 PF02463 RecF/RecN/SMC N terminal domain AF2641_12130 PF00035 Double-stranded RNA binding motif AF2641_12130 PF14622 Ribonuclease-III-like AF2641_12135 PF00550 Phosphopantetheine attachment site AF2641_12145 PF00698 Acyl transferase domain AF2641_12150 PF02504 Fatty acid synthesis protein AF2641_12155 PF08279 HTH domain AF2641_12155 PF01575 MaoC like domain AF2641_12160 PF00270 DEAD/DEAH box helicase AF2641_12160 PF17191 RecG wedge domain AF2641_12160 PF00271 Helicase conserved C-terminal domain AF2641_12165 PF03313 Serine dehydratase alpha chain AF2641_12170 PF01842 ACT domain AF2641_12170 PF03315 Serine dehydratase beta chain AF2641_12175 PF02734 DAK2 domain AF2641_12175 PF13684 Dihydroxyacetone kinase family AF2641_12180 PF03780 Asp23 family, cell envelope-related function AF2641_12185 PF00830 Ribosomal L28 family AF2641_12190 PF08183 Stage V sporulation protein family AF2641_12195 PF04263 Thiamin pyrophosphokinase, catalytic domain AF2641_12195 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain AF2641_12200 PF00834 Ribulose-phosphate 3 epimerase family AF2641_12205 PF16745 RsgA N-terminal domain AF2641_12205 PF03193 RsgA GTPase AF2641_12210 PF03793 PASTA domain AF2641_12210 PF00069 Protein kinase domain AF2641_12220 PF04055 Radical SAM superfamily AF2641_12225 PF01029 NusB family AF2641_12225 PF01189 16S rRNA methyltransferase RsmB/F AF2641_12230 PF02911 Formyl transferase, C-terminal domain AF2641_12230 PF00551 Formyl transferase AF2641_12235 PF01327 Polypeptide deformylase AF2641_12240 PF00271 Helicase conserved C-terminal domain AF2641_12240 PF04851 Type III restriction enzyme, res subunit AF2641_12240 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AF2641_12240 PF17764 3′ DNA-binding domain (3′BD) AF2641_12240 PF18074 Primosomal protein N C-terminal domain AF2641_12245 PF02441 Flavoprotein AF2641_12245 PF04127 DNA / pantothenate metabolism flavoprotein AF2641_12250 PF01192 RNA polymerase Rpb6 AF2641_12255 PF00625 Guanylate kinase AF2641_12260 PF08340 Domain of unknown function (DUF1732) AF2641_12260 PF03755 YicC-like family, N-terminal region AF2641_12265 PF00689 Cation transporting ATPase, C-terminus AF2641_12265 PF00690 Cation transporter/ATPase, N-terminus AF2641_12300 PF00350 Dynamin family AF2641_12320 PF00156 Phosphoribosyl transferase domain AF2641_12325 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AF2641_12330 PF01180 Dihydroorotate dehydrogenase AF2641_12335 PF00175 Oxidoreductase NAD-binding domain AF2641_12335 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AF2641_12340 PF02142 MGS-like domain AF2641_12340 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AF2641_12340 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AF2641_12345 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AF2641_12345 PF00117 Glutamine amidotransferase class-I AF2641_12350 PF01979 Amidohydrolase family AF2641_12355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AF2641_12355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AF2641_12360 PF00860 Permease family AF2641_12365 PF00156 Phosphoribosyl transferase domain AF2641_12370 PF01479 S4 domain AF2641_12370 PF00849 RNA pseudouridylate synthase AF2641_12375 PF01252 Signal peptidase (SPase) II AF2641_12385 PF08264 Anticodon-binding domain of tRNA AF2641_12385 PF00133 tRNA synthetases class I (I, L, M and V) AF2641_12385 PF06827 Zinc finger found in FPG and IleRS AF2641_12390 PF05103 DivIVA protein AF2641_12395 PF17774 Putative RNA-binding domain in YlmH AF2641_12395 PF01479 S4 domain AF2641_12400 PF02325 YGGT family AF2641_12405 PF04472 Cell division protein SepF AF2641_12410 PF01168 Alanine racemase, N-terminal domain AF2641_12420 PF05239 PRC-barrel domain AF2641_12425 PF04542 Sigma-70 region 2 AF2641_12425 PF04539 Sigma-70 region 3 AF2641_12425 PF04545 Sigma-70, region 4 AF2641_12430 PF04545 Sigma-70, region 4 AF2641_12430 PF04542 Sigma-70 region 2 AF2641_12435 PF03419 Sporulation factor SpoIIGA AF2641_12440 PF00091 Tubulin/FtsZ family, GTPase domain AF2641_12440 PF12327 FtsZ family, C-terminal domain AF2641_12445 PF02491 SHS2 domain inserted in FTSA AF2641_12450 PF06947 Protein of unknown function (DUF1290) AF2641_12455 PF05949 Bacterial protein of unknown function (DUF881) AF2641_12460 PF05949 Bacterial protein of unknown function (DUF881) AF2641_12465 PF08478 POTRA domain, FtsQ-type AF2641_12470 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AF2641_12470 PF01565 FAD binding domain AF2641_12475 PF03033 Glycosyltransferase family 28 N-terminal domain AF2641_12475 PF04101 Glycosyltransferase family 28 C-terminal domain AF2641_12480 PF01098 Cell cycle protein AF2641_12485 PF08245 Mur ligase middle domain AF2641_12485 PF02875 Mur ligase family, glutamate ligase domain AF2641_12490 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AF2641_12490 PF00953 Glycosyl transferase family 4 AF2641_12495 PF08245 Mur ligase middle domain AF2641_12495 PF01225 Mur ligase family, catalytic domain AF2641_12495 PF02875 Mur ligase family, glutamate ligase domain AF2641_12500 PF03717 Penicillin-binding Protein dimerisation domain AF2641_12500 PF00905 Penicillin binding protein transpeptidase domain AF2641_12500 PF03793 PASTA domain AF2641_12510 PF04977 Septum formation initiator AF2641_12515 PF01795 MraW methylase family AF2641_12520 PF10079 Bacillithiol biosynthesis BshC AF2641_12530 PF02558 Ketopantoate reductase PanE/ApbA AF2641_12530 PF08546 Ketopantoate reductase PanE/ApbA C terminal AF2641_12540 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF2641_12540 PF00378 Enoyl-CoA hydratase/isomerase AF2641_12540 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF2641_12545 PF01783 Ribosomal L32p protein family AF2641_12550 PF02620 Large ribosomal RNA subunit accumulation protein YceD AF2641_12555 PF05636 HIGH Nucleotidyl Transferase AF2641_12560 PF05362 Lon protease (S16) C-terminal proteolytic domain AF2641_12560 PF13180 PDZ domain AF2641_12565 PF01734 Patatin-like phospholipase AF2641_12570 PF07670 Nucleoside recognition AF2641_12575 PF01467 Cytidylyltransferase-like AF2641_12595 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) AF2641_12600 PF06133 Control of competence regulator ComK, YlbF/YmcA AF2641_12610 PF14003 YlbE-like protein AF2641_12615 PF14071 Putative coat protein AF2641_12620 PF14504 CAP-associated N-terminal AF2641_12620 PF00188 Cysteine-rich secretory protein family AF2641_12625 PF00571 CBS domain AF2641_12630 PF08868 YugN-like family AF2641_12650 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AF2641_12655 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AF2641_12660 PF00510 Cytochrome c oxidase subunit III AF2641_12665 PF00115 Cytochrome C and Quinol oxidase polypeptide I AF2641_12670 PF00034 Cytochrome c AF2641_12670 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AF2641_12670 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AF2641_12675 PF01040 UbiA prenyltransferase family AF2641_12680 PF02628 Cytochrome oxidase assembly protein AF2641_12685 PF00289 Biotin carboxylase, N-terminal domain AF2641_12685 PF00364 Biotin-requiring enzyme AF2641_12685 PF02785 Biotin carboxylase C-terminal domain AF2641_12685 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AF2641_12685 PF00682 HMGL-like AF2641_12685 PF02436 Conserved carboxylase domain AF2641_12690 PF01098 Cell cycle protein AF2641_12695 PF07408 Protein of unknown function (DUF1507) AF2641_12705 PF02562 PhoH-like protein AF2641_12705 PF13638 PIN domain AF2641_12710 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AF2641_12730 PF14036 YlaH-like protein AF2641_12745 PF00459 Inositol monophosphatase family AF2641_12755 PF05256 Uncharacterised protein family (UPF0223) AF2641_12760 PF03060 Nitronate monooxygenase AF2641_12765 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AF2641_12765 PF01276 Orn/Lys/Arg decarboxylase, major domain AF2641_12790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AF2641_12790 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF2641_12795 PF00364 Biotin-requiring enzyme AF2641_12795 PF02817 e3 binding domain AF2641_12795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AF2641_12800 PF02779 Transketolase, pyrimidine binding domain AF2641_12800 PF02780 Transketolase, C-terminal domain AF2641_12805 PF00676 Dehydrogenase E1 component AF2641_12810 PF01327 Polypeptide deformylase AF2641_12825 PF17770 Ribonuclease J C-terminal domain AF2641_12825 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AF2641_12825 PF00753 Metallo-beta-lactamase superfamily AF2641_12835 PF02254 TrkA-N domain AF2641_12835 PF02080 TrkA-C domain AF2641_12840 PF00578 AhpC/TSA family AF2641_12845 PF07687 Peptidase dimerisation domain AF2641_12845 PF01546 Peptidase family M20/M25/M40 AF2641_12850 PF14602 Hexapeptide repeat of succinyl-transferase AF2641_12850 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AF2641_12850 PF00132 Bacterial transferase hexapeptide (six repeats) AF2641_12860 PF08796 Protein of unknown function (DUF1797) AF2641_12870 PF10388 EAL-domain associated signalling protein domain AF2641_12870 PF00563 EAL domain AF2641_12880 PF00149 Calcineurin-like phosphoesterase AF2641_12880 PF10518 TAT (twin-arginine translocation) pathway signal sequence AF2641_12885 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AF2641_12890 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AF2641_12895 PF13090 Polyphosphate kinase C-terminal domain 2 AF2641_12895 PF02503 Polyphosphate kinase middle domain AF2641_12895 PF13089 Polyphosphate kinase N-terminal domain AF2641_12895 PF17941 Polyphosphate kinase C-terminal domain 1 AF2641_12900 PF02541 Ppx/GppA phosphatase family AF2641_12905 PF14177 YkyB-like protein AF2641_12910 PF00563 EAL domain AF2641_12910 PF00990 Diguanylate cyclase, GGDEF domain AF2641_12910 PF03707 Bacterial signalling protein N terminal repeat AF2641_12915 PF05504 Spore germination B3/ GerAC like, C-terminal AF2641_12920 PF03845 Spore germination protein AF2641_12925 PF03323 Bacillus/Clostridium GerA spore germination protein AF2641_12930 PF16736 Single Cache-like AF2641_12930 PF00989 PAS fold AF2641_12930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_12930 PF00512 His Kinase A (phospho-acceptor) domain AF2641_12935 PF00072 Response regulator receiver domain AF2641_12935 PF00486 Transcriptional regulatory protein, C terminal AF2641_12945 PF00535 Glycosyl transferase family 2 AF2641_12955 PF00990 Diguanylate cyclase, GGDEF domain AF2641_12955 PF00072 Response regulator receiver domain AF2641_12960 PF01584 CheW-like domain AF2641_12960 PF00072 Response regulator receiver domain AF2641_12975 PF00512 His Kinase A (phospho-acceptor) domain AF2641_12975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_12985 PF08858 IDEAL domain AF2641_12985 PF08864 UPF0302 domain AF2641_12990 PF00155 Aminotransferase class I and II AF2641_12995 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AF2641_12995 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AF2641_13010 PF00990 Diguanylate cyclase, GGDEF domain AF2641_13010 PF00072 Response regulator receiver domain AF2641_13015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_13020 PF00672 HAMP domain AF2641_13020 PF02743 Cache domain AF2641_13020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_13025 PF05524 PEP-utilising enzyme, N-terminal AF2641_13025 PF02896 PEP-utilising enzyme, TIM barrel domain AF2641_13025 PF00391 PEP-utilising enzyme, mobile domain AF2641_13030 PF00381 PTS HPr component phosphorylation site AF2641_13035 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AF2641_13035 PF00367 phosphotransferase system, EIIB AF2641_13035 PF02378 Phosphotransferase system, EIIC AF2641_13040 PF03123 CAT RNA binding domain AF2641_13040 PF00874 PRD domain AF2641_13050 PF01476 LysM domain AF2641_13050 PF05257 CHAP domain AF2641_13060 PF00561 alpha/beta hydrolase fold AF2641_13065 PF03334 Na+/H+ antiporter subunit AF2641_13070 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AF2641_13075 PF01899 Na+/H+ ion antiporter subunit AF2641_13080 PF00361 Proton-conducting membrane transporter AF2641_13085 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AF2641_13090 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AF2641_13095 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AF2641_13095 PF00361 Proton-conducting membrane transporter AF2641_13095 PF13244 Domain of unknown function (DUF4040) AF2641_13100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_13120 PF01638 HxlR-like helix-turn-helix AF2641_13125 PF00881 Nitroreductase family AF2641_13130 PF00512 His Kinase A (phospho-acceptor) domain AF2641_13130 PF00989 PAS fold AF2641_13130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_13135 PF14166 YueH-like protein AF2641_13155 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) AF2641_13160 PF13460 NAD(P)H-binding AF2641_13180 PF04055 Radical SAM superfamily AF2641_13185 PF01242 6-pyruvoyl tetrahydropterin synthase AF2641_13190 PF06508 Queuosine biosynthesis protein QueC AF2641_13195 PF01895 PhoU domain AF2641_13205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_13205 PF00672 HAMP domain AF2641_13220 PF13115 YtkA-like AF2641_13230 PF00486 Transcriptional regulatory protein, C terminal AF2641_13230 PF00072 Response regulator receiver domain AF2641_13235 PF00512 His Kinase A (phospho-acceptor) domain AF2641_13235 PF00672 HAMP domain AF2641_13235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_13235 PF18698 Histidine kinase sensor domain AF2641_13235 PF00989 PAS fold AF2641_13240 PF08447 PAS fold AF2641_13240 PF13426 PAS domain AF2641_13240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_13245 PF10431 C-terminal, D2-small domain, of ClpB protein AF2641_13245 PF17871 AAA lid domain AF2641_13245 PF07724 AAA domain (Cdc48 subfamily) AF2641_13245 PF00004 ATPase family associated with various cellular activities (AAA) AF2641_13250 PF00440 Bacterial regulatory proteins, tetR family AF2641_13260 PF00005 ABC transporter AF2641_13265 PF13520 Amino acid permease AF2641_13280 PF02743 Cache domain AF2641_13280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_13280 PF00512 His Kinase A (phospho-acceptor) domain AF2641_13285 PF02535 ZIP Zinc transporter AF2641_13290 PF03079 ARD/ARD' family AF2641_13295 PF00596 Class II Aldolase and Adducin N-terminal domain AF2641_13305 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AF2641_13305 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AF2641_13310 PF00155 Aminotransferase class I and II AF2641_13315 PF00795 Carbon-nitrogen hydrolase AF2641_13320 PF01636 Phosphotransferase enzyme family AF2641_13325 PF01008 Initiation factor 2 subunit family AF2641_13330 PF13407 Periplasmic binding protein domain AF2641_13335 PF00005 ABC transporter AF2641_13340 PF02653 Branched-chain amino acid transport system / permease component AF2641_13345 PF12729 Four helix bundle sensory module for signal transduction AF2641_13345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_13345 PF00672 HAMP domain AF2641_13350 PF13426 PAS domain AF2641_13350 PF13188 PAS domain AF2641_13350 PF00989 PAS fold AF2641_13350 PF00512 His Kinase A (phospho-acceptor) domain AF2641_13350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_13355 PF02589 LUD domain AF2641_13360 PF13183 4Fe-4S dicluster domain AF2641_13360 PF11870 Domain of unknown function (DUF3390) AF2641_13360 PF02589 LUD domain AF2641_13365 PF02754 Cysteine-rich domain AF2641_13370 PF07729 FCD domain AF2641_13370 PF00392 Bacterial regulatory proteins, gntR family AF2641_13375 PF02652 L-lactate permease AF2641_13385 PF12323 Helix-turn-helix domain AF2641_13385 PF07282 Putative transposase DNA-binding domain AF2641_13385 PF01385 Probable transposase AF2641_13415 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_13420 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_13430 PF13419 Haloacid dehalogenase-like hydrolase AF2641_13435 PF03632 Glycosyl hydrolase family 65 central catalytic domain AF2641_13435 PF03636 Glycosyl hydrolase family 65, N-terminal domain AF2641_13435 PF03633 Glycosyl hydrolase family 65, C-terminal domain AF2641_13440 PF00356 Bacterial regulatory proteins, lacI family AF2641_13450 PF00672 HAMP domain AF2641_13450 PF02743 Cache domain AF2641_13450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_13455 PF13556 PucR C-terminal helix-turn-helix domain AF2641_13455 PF17853 GGDEF-like domain AF2641_13455 PF05651 Putative sugar diacid recognition AF2641_13460 PF02913 FAD linked oxidases, C-terminal domain AF2641_13460 PF01565 FAD binding domain AF2641_13465 PF13183 4Fe-4S dicluster domain AF2641_13465 PF02754 Cysteine-rich domain AF2641_13475 PF00210 Ferritin-like domain AF2641_13480 PF03741 Integral membrane protein TerC family AF2641_13485 PF13520 Amino acid permease AF2641_13490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_13490 PF00512 His Kinase A (phospho-acceptor) domain AF2641_13495 PF07690 Major Facilitator Superfamily AF2641_13500 PF00535 Glycosyl transferase family 2 AF2641_13510 PF00398 Ribosomal RNA adenine dimethylase AF2641_13515 PF02525 Flavodoxin-like fold AF2641_13530 PF02447 GntP family permease AF2641_13535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AF2641_13535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AF2641_13540 PF00356 Bacterial regulatory proteins, lacI family AF2641_13545 PF01168 Alanine racemase, N-terminal domain AF2641_13555 PF03949 Malic enzyme, NAD binding domain AF2641_13555 PF00390 Malic enzyme, N-terminal domain AF2641_13560 PF10415 Fumarase C C-terminus AF2641_13560 PF00206 Lyase AF2641_13565 PF00710 Asparaginase, N-terminal AF2641_13565 PF17763 Glutaminase/Asparaginase C-terminal domain AF2641_13570 PF01381 Helix-turn-helix AF2641_13575 PF00069 Protein kinase domain AF2641_13590 PF00892 EamA-like transporter family AF2641_13595 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AF2641_13600 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AF2641_13605 PF05726 Pirin C-terminal cupin domain AF2641_13605 PF02678 Pirin AF2641_13610 PF00293 NUDIX domain AF2641_13615 PF00005 ABC transporter AF2641_13615 PF00664 ABC transporter transmembrane region AF2641_13620 PF00005 ABC transporter AF2641_13620 PF00664 ABC transporter transmembrane region AF2641_13625 PF13276 HTH-like domain AF2641_13625 PF00665 Integrase core domain AF2641_13625 PF13333 Integrase core domain AF2641_13635 PF01256 Carbohydrate kinase AF2641_13635 PF03853 YjeF-related protein N-terminus AF2641_13645 PF01022 Bacterial regulatory protein, arsR family AF2641_13655 PF01790 Prolipoprotein diacylglyceryl transferase AF2641_13660 PF00733 Asparagine synthase AF2641_13660 PF13537 Glutamine amidotransferase domain AF2641_13665 PF13529 Peptidase_C39 like family AF2641_13670 PF10518 TAT (twin-arginine translocation) pathway signal sequence AF2641_13670 PF07732 Multicopper oxidase AF2641_13670 PF07731 Multicopper oxidase AF2641_13670 PF00394 Multicopper oxidase AF2641_13675 PF00403 Heavy-metal-associated domain AF2641_13680 PF00403 Heavy-metal-associated domain AF2641_13685 PF02583 Metal-sensitive transcriptional repressor AF2641_13690 PF02683 Cytochrome C biogenesis protein transmembrane region AF2641_13695 PF00578 AhpC/TSA family AF2641_13720 PF00486 Transcriptional regulatory protein, C terminal AF2641_13720 PF00072 Response regulator receiver domain AF2641_13725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF2641_13725 PF00512 His Kinase A (phospho-acceptor) domain AF2641_13725 PF00672 HAMP domain AF2641_13780 PF01609 Transposase DDE domain AF2641_13825 PF01609 Transposase DDE domain AF2641_13835 PF01048 Phosphorylase superfamily AF2641_13860 PF13800 Sigma factor regulator N-terminal AF2641_13860 PF13791 Sigma factor regulator C-terminal AF2641_13865 PF04542 Sigma-70 region 2 AF2641_13865 PF08281 Sigma-70, region 4 AF2641_13880 PF00145 C-5 cytosine-specific DNA methylase AF2641_13910 PF00589 Phage integrase family AF2641_13910 PF14659 Phage integrase, N-terminal SAM-like domain AF2641_13925 PF01966 HD domain AF2641_13930 PF01053 Cys/Met metabolism PLP-dependent enzyme AF2641_13935 PF01053 Cys/Met metabolism PLP-dependent enzyme AF2641_13940 PF07883 Cupin domain AF2641_13945 PF01741 Large-conductance mechanosensitive channel, MscL AF2641_13950 PF04608 Phosphatidylglycerophosphatase A AF2641_13955 PF00756 Putative esterase AF2641_13965 PF13673 Acetyltransferase (GNAT) domain AF2641_13970 PF04239 Protein of unknown function (DUF421) AF2641_13975 PF13361 UvrD-like helicase C-terminal domain AF2641_13975 PF00580 UvrD/REP helicase N-terminal domain AF2641_13980 PF14069 Stage VI sporulation protein F AF2641_13985 PF09680 Family of unknown function AF2641_13995 PF00085 Thioredoxin AF2641_14000 PF04239 Protein of unknown function (DUF421) AF2641_14010 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AF2641_14015 PF07451 Stage V sporulation protein AD (SpoVAD) AF2641_14020 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AF2641_14030 PF01609 Transposase DDE domain AF2641_14060 PF07098 Protein of unknown function (DUF1360) AF2641_14070 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AF2641_14070 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AF2641_14070 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AF2641_14075 PF01370 NAD dependent epimerase/dehydratase family AF2641_14080 PF00534 Glycosyl transferases group 1 AF2641_14080 PF13439 Glycosyltransferase Family 4 AF2641_14095 PF07690 Major Facilitator Superfamily AF2641_14105 PF01769 Divalent cation transporter AF2641_14105 PF03448 MgtE intracellular N domain AF2641_14105 PF00571 CBS domain AF2641_14110 PF01098 Cell cycle protein AF2641_14115 PF12671 Putative amidase domain AF2641_14125 PF00149 Calcineurin-like phosphoesterase AF2641_14130 PF00849 RNA pseudouridylate synthase AF2641_14135 PF01513 ATP-NAD kinase AF2641_14140 PF04607 Region found in RelA / SpoT proteins AF2641_14150 PF01928 CYTH domain AF2641_14155 PF01464 Transglycosylase SLT domain AF2641_14160 PF01152 Bacterial-like globin AF2641_14170 PF08439 Oligopeptidase F AF2641_14170 PF01432 Peptidase family M3 AF2641_14180 PF05389 Negative regulator of genetic competence (MecA) AF2641_14185 PF13091 PLD-like domain AF2641_14185 PF13396 Phospholipase_D-nuclease N-terminal AF2641_14190 PF03960 ArsC family AF2641_14200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AF2641_14200 PF00005 ABC transporter AF2641_14205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AF2641_14205 PF00005 ABC transporter AF2641_14210 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_14210 PF12911 N-terminal TM domain of oligopeptide transport permease C AF2641_14215 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_14220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AF2641_14235 PF00579 tRNA synthetases class I (W and Y) AF2641_14240 PF12227 Protein of unknown function (DUF3603) AF2641_14250 PF10026 Predicted Zn-dependent protease (DUF2268) AF2641_14255 PF02801 Beta-ketoacyl synthase, C-terminal domain AF2641_14255 PF00109 Beta-ketoacyl synthase, N-terminal domain AF2641_14260 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AF2641_14260 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AF2641_14265 PF02608 ABC transporter substrate-binding protein PnrA-like AF2641_14280 PF17871 AAA lid domain AF2641_14280 PF07724 AAA domain (Cdc48 subfamily) AF2641_14280 PF00004 ATPase family associated with various cellular activities (AAA) AF2641_14280 PF10431 C-terminal, D2-small domain, of ClpB protein AF2641_14280 PF02861 Clp amino terminal domain, pathogenicity island component AF2641_14285 PF14168 YjzC-like protein AF2641_14290 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AF2641_14290 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AF2641_14295 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AF2641_14295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AF2641_14300 PF00117 Glutamine amidotransferase class-I AF2641_14300 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AF2641_14305 PF00202 Aminotransferase class-III AF2641_14310 PF00696 Amino acid kinase family AF2641_14315 PF01960 ArgJ family AF2641_14320 PF02774 Semialdehyde dehydrogenase, dimerisation domain AF2641_14320 PF01118 Semialdehyde dehydrogenase, NAD binding domain AF2641_14325 PF00325 Bacterial regulatory proteins, crp family AF2641_14325 PF00027 Cyclic nucleotide-binding domain AF2641_14335 PF00326 Prolyl oligopeptidase family AF2641_14350 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AF2641_14350 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AF2641_14355 PF02645 Uncharacterised protein, DegV family COG1307 AF2641_14365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_14365 PF00672 HAMP domain AF2641_14365 PF02743 Cache domain AF2641_14375 PF04461 Protein of unknown function (DUF520) AF2641_14380 PF02574 Homocysteine S-methyltransferase AF2641_14380 PF02219 Methylenetetrahydrofolate reductase AF2641_14385 PF02607 B12 binding domain AF2641_14385 PF02310 B12 binding domain AF2641_14385 PF02574 Homocysteine S-methyltransferase AF2641_14385 PF02965 Vitamin B12 dependent methionine synthase, activation domain AF2641_14385 PF00809 Pterin binding enzyme AF2641_14390 PF00356 Bacterial regulatory proteins, lacI family AF2641_14395 PF01055 Glycosyl hydrolases family 31 AF2641_14395 PF13802 Galactose mutarotase-like AF2641_14395 PF17137 Domain of unknown function (DUF5110) AF2641_14395 PF16338 Domain of unknown function (DUF4968) AF2641_14400 PF01373 Glycosyl hydrolase family 14 AF2641_14400 PF00128 Alpha amylase, catalytic domain AF2641_14400 PF03423 Carbohydrate binding domain (family 25) AF2641_14405 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_14410 PF00528 Binding-protein-dependent transport system inner membrane component AF2641_14415 PF13416 Bacterial extracellular solute-binding protein AF2641_14420 PF02903 Alpha amylase, N-terminal ig-like domain AF2641_14420 PF00128 Alpha amylase, catalytic domain AF2641_14420 PF16657 Maltogenic Amylase, C-terminal domain AF2641_14425 PF02311 AraC-like ligand binding domain AF2641_14425 PF12833 Helix-turn-helix domain AF2641_14430 PF01554 MatE AF2641_14435 PF01593 Flavin containing amine oxidoreductase AF2641_14440 PF00535 Glycosyl transferase family 2 AF2641_14465 PF01593 Flavin containing amine oxidoreductase AF2641_14470 PF00733 Asparagine synthase AF2641_14470 PF13537 Glutamine amidotransferase domain AF2641_14480 PF03707 Bacterial signalling protein N terminal repeat AF2641_14480 PF00563 EAL domain AF2641_14480 PF00990 Diguanylate cyclase, GGDEF domain AF2641_14485 PF07457 Protein of unknown function (DUF1516) AF2641_14490 PF00202 Aminotransferase class-III AF2641_14495 PF01557 Fumarylacetoacetate (FAA) hydrolase family AF2641_14500 PF09388 Spo0E like sporulation regulatory protein AF2641_14505 PF04235 Protein of unknown function (DUF418) AF2641_14510 PF13193 AMP-binding enzyme C-terminal domain AF2641_14510 PF00501 AMP-binding enzyme AF2641_14520 PF10676 Spore germination protein gerPA/gerPF AF2641_14525 PF10803 Spore germination GerPB AF2641_14530 PF10737 Spore germination protein GerPC AF2641_14545 PF10676 Spore germination protein gerPA/gerPF AF2641_14555 PF13476 AAA domain AF2641_14560 PF00149 Calcineurin-like phosphoesterase AF2641_14560 PF12320 Type 5 capsule protein repressor C-terminal domain AF2641_14565 PF13361 UvrD-like helicase C-terminal domain AF2641_14565 PF12705 PD-(D/E)XK nuclease superfamily AF2641_14565 PF00580 UvrD/REP helicase N-terminal domain AF2641_14570 PF13361 UvrD-like helicase C-terminal domain AF2641_14570 PF12705 PD-(D/E)XK nuclease superfamily AF2641_14575 PF09335 SNARE associated Golgi protein AF2641_14580 PF06338 ComK protein AF2641_14585 PF00463 Isocitrate lyase family AF2641_14590 PF01435 Peptidase family M48 AF2641_14590 PF16491 CAAX prenyl protease N-terminal, five membrane helices AF2641_14595 PF02630 SCO1/SenC AF2641_14600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_14600 PF00672 HAMP domain AF2641_14605 PF00672 HAMP domain AF2641_14605 PF02743 Cache domain AF2641_14605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF2641_14610 PF00990 Diguanylate cyclase, GGDEF domain AF2641_14610 PF00563 EAL domain AF2641_14610 PF03707 Bacterial signalling protein N terminal repeat AF2641_14620 PF02653 Branched-chain amino acid transport system / permease component