locus-tag class description Aflv_0001 PF08299 Bacterial dnaA protein helix-turn-helix Aflv_0001 PF11638 DnaA N-terminal domain Aflv_0001 PF00308 Bacterial dnaA protein Aflv_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Aflv_0002 PF02767 DNA polymerase III beta subunit, central domain Aflv_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Aflv_0004 PF02463 RecF/RecN/SMC N terminal domain Aflv_0005 PF00204 DNA gyrase B Aflv_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_0005 PF01751 Toprim domain Aflv_0005 PF00986 DNA gyrase B subunit, carboxyl terminus Aflv_0006 PF00521 DNA gyrase/topoisomerase IV, subunit A Aflv_0006 PF03989 DNA gyrase C-terminal domain, beta-propeller Aflv_0007 PF00072 Response regulator receiver domain Aflv_0008 PF14175 YaaC-like Protein Aflv_0009 PF00571 CBS domain Aflv_0009 PF00478 IMP dehydrogenase / GMP reductase domain Aflv_0010 PF00768 D-alanyl-D-alanine carboxypeptidase Aflv_0010 PF07943 Penicillin-binding protein 5, C-terminal domain Aflv_0011 PF01680 SOR/SNZ family Aflv_0012 PF01174 SNO glutamine amidotransferase family Aflv_0013 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Aflv_0013 PF02403 Seryl-tRNA synthetase N-terminal domain Aflv_0014 PF01712 Deoxynucleoside kinase Aflv_0015 PF01712 Deoxynucleoside kinase Aflv_0016 PF14437 MafB19-like deaminase Aflv_0017 PF12169 DNA polymerase III subunits gamma and tau domain III Aflv_0018 PF02575 YbaB/EbfC DNA-binding family Aflv_0019 PF13662 Toprim domain Aflv_0019 PF02132 RecR protein Aflv_0020 PF10704 Protein of unknown function (DUF2508) Aflv_0021 PF07441 SigmaK-factor processing regulatory protein BofA Aflv_0023 PF10764 Inhibitor of sigma-G Gin Aflv_0024 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Aflv_0024 PF01276 Orn/Lys/Arg decarboxylase, major domain Aflv_0025 PF02223 Thymidylate kinase Aflv_0026 PF09115 DNA polymerase III, delta subunit, C terminal Aflv_0027 PF04468 PSP1 C-terminal conserved region Aflv_0028 PF06156 Initiation control protein YabA Aflv_0029 PF05175 Methyltransferase small domain Aflv_0030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Aflv_0031 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Aflv_0031 PF18277 AbrB C-terminal domain Aflv_0032 PF08264 Anticodon-binding domain of tRNA Aflv_0032 PF09334 tRNA synthetases class I (M) Aflv_0032 PF01588 Putative tRNA binding domain Aflv_0033 PF01026 TatD related DNase Aflv_0034 PF06725 3D domain Aflv_0034 PF03990 G5-linked-Ubiquitin-like domain Aflv_0034 PF07501 G5 domain Aflv_0035 PF13662 Toprim domain Aflv_0035 PF13331 Domain of unknown function (DUF4093) Aflv_0036 PF00398 Ribosomal RNA adenine dimethylase Aflv_0037 PF05582 YabG peptidase U57 Aflv_0038 PF06257 Biofilm formation stimulator VEG Aflv_0039 PF08544 GHMP kinases C terminal Aflv_0039 PF00288 GHMP kinases N terminal domain Aflv_0040 PF00156 Phosphoribosyl transferase domain Aflv_0040 PF09182 Bacterial purine repressor, N-terminal Aflv_0041 PF01042 Endoribonuclease L-PSP Aflv_0042 PF04026 SpoVG Aflv_0043 PF00483 Nucleotidyl transferase Aflv_0043 PF00132 Bacterial transferase hexapeptide (six repeats) Aflv_0044 PF14572 Phosphoribosyl synthetase-associated domain Aflv_0044 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Aflv_0045 PF01386 Ribosomal L25p family Aflv_0045 PF14693 Ribosomal protein TL5, C-terminal domain Aflv_0046 PF01195 Peptidyl-tRNA hydrolase Aflv_0047 PF10955 Protein of unknown function (DUF2757) Aflv_0048 PF00271 Helicase conserved C-terminal domain Aflv_0048 PF00270 DEAD/DEAH box helicase Aflv_0048 PF17757 UvrB interaction domain Aflv_0048 PF03461 TRCF domain Aflv_0048 PF02559 CarD-like/TRCF domain Aflv_0049 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Aflv_0049 PF15714 Stage V sporulation protein T C-terminal, transcription factor Aflv_0050 PF01943 Polysaccharide biosynthesis protein Aflv_0050 PF14667 Polysaccharide biosynthesis C-terminal domain Aflv_0051 PF03819 MazG nucleotide pyrophosphohydrolase domain Aflv_0051 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Aflv_0052 PF01479 S4 domain Aflv_0053 PF07873 YabP family Aflv_0054 PF09578 Spore cortex protein YabQ (Spore_YabQ) Aflv_0056 PF00575 S1 RNA binding domain Aflv_0057 PF07228 Stage II sporulation protein E (SpoIIE) Aflv_0058 PF00092 von Willebrand factor type A domain Aflv_0059 PF00069 Protein kinase domain Aflv_0060 PF01171 PP-loop family Aflv_0060 PF09179 TilS substrate binding domain Aflv_0060 PF11734 TilS substrate C-terminal domain Aflv_0062 PF17862 AAA+ lid domain Aflv_0062 PF00004 ATPase family associated with various cellular activities (AAA) Aflv_0062 PF06480 FtsH Extracellular Aflv_0062 PF01434 Peptidase family M41 Aflv_0063 PF03309 Type III pantothenate kinase Aflv_0064 PF01430 Hsp33 protein Aflv_0065 PF00291 Pyridoxal-phosphate dependent enzyme Aflv_0066 PF04715 Anthranilate synthase component I, N terminal region Aflv_0066 PF00425 chorismate binding enzyme Aflv_0067 PF00117 Glutamine amidotransferase class-I Aflv_0068 PF01063 Amino-transferase class IV Aflv_0069 PF00809 Pterin binding enzyme Aflv_0070 PF02152 Dihydroneopterin aldolase Aflv_0071 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Aflv_0072 PF01207 Dihydrouridine synthase (Dus) Aflv_0073 PF01336 OB-fold nucleic acid binding domain Aflv_0073 PF00152 tRNA synthetases class II (D, K and N) Aflv_0074 PF17727 CtsR C-terminal dimerization domain Aflv_0074 PF05848 CtsR N-terminal HTH domain Aflv_0075 PF02151 UvrB/uvrC motif Aflv_0076 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Aflv_0077 PF17871 AAA lid domain Aflv_0077 PF10431 C-terminal, D2-small domain, of ClpB protein Aflv_0077 PF02861 Clp amino terminal domain, pathogenicity island component Aflv_0077 PF00004 ATPase family associated with various cellular activities (AAA) Aflv_0077 PF07724 AAA domain (Cdc48 subfamily) Aflv_0078 PF18073 Rubredoxin metal binding domain Aflv_0080 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Aflv_0081 PF02542 YgbB family Aflv_0082 PF00749 tRNA synthetases class I (E and Q), catalytic domain Aflv_0083 PF06426 Serine acetyltransferase, N-terminal Aflv_0083 PF00132 Bacterial transferase hexapeptide (six repeats) Aflv_0084 PF09190 DALR domain Aflv_0084 PF01406 tRNA synthetases class I (C) catalytic domain Aflv_0085 PF00636 Ribonuclease III domain Aflv_0086 PF08032 RNA 2'-O ribose methyltransferase substrate binding Aflv_0086 PF00588 SpoU rRNA Methylase family Aflv_0087 PF05991 YacP-like NYN domain Aflv_0088 PF08281 Sigma-70, region 4 Aflv_0088 PF04542 Sigma-70 region 2 Aflv_0089 PF00471 Ribosomal protein L33 Aflv_0090 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Aflv_0091 PF02357 Transcription termination factor nusG Aflv_0091 PF00467 KOW motif Aflv_0092 PF03946 Ribosomal protein L11, N-terminal domain Aflv_0092 PF00298 Ribosomal protein L11, RNA binding domain Aflv_0093 PF00687 Ribosomal protein L1p/L10e family Aflv_0094 PF00466 Ribosomal protein L10 Aflv_0095 PF00542 Ribosomal protein L7/L12 C-terminal domain Aflv_0095 PF16320 Ribosomal protein L7/L12 dimerisation domain Aflv_0096 PF05175 Methyltransferase small domain Aflv_0097 PF04561 RNA polymerase Rpb2, domain 2 Aflv_0097 PF04563 RNA polymerase beta subunit Aflv_0097 PF00562 RNA polymerase Rpb2, domain 6 Aflv_0097 PF10385 RNA polymerase beta subunit external 1 domain Aflv_0097 PF04560 RNA polymerase Rpb2, domain 7 Aflv_0097 PF04565 RNA polymerase Rpb2, domain 3 Aflv_0098 PF04997 RNA polymerase Rpb1, domain 1 Aflv_0098 PF00623 RNA polymerase Rpb1, domain 2 Aflv_0098 PF04998 RNA polymerase Rpb1, domain 5 Aflv_0098 PF05000 RNA polymerase Rpb1, domain 4 Aflv_0098 PF04983 RNA polymerase Rpb1, domain 3 Aflv_0099 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Aflv_0100 PF00164 Ribosomal protein S12/S23 Aflv_0101 PF00177 Ribosomal protein S7p/S5e Aflv_0102 PF03764 Elongation factor G, domain IV Aflv_0102 PF00009 Elongation factor Tu GTP binding domain Aflv_0102 PF03144 Elongation factor Tu domain 2 Aflv_0102 PF00679 Elongation factor G C-terminus Aflv_0102 PF14492 Elongation Factor G, domain II Aflv_0103 PF03143 Elongation factor Tu C-terminal domain Aflv_0103 PF03144 Elongation factor Tu domain 2 Aflv_0103 PF00009 Elongation factor Tu GTP binding domain Aflv_0104 PF00338 Ribosomal protein S10p/S20e Aflv_0105 PF00297 Ribosomal protein L3 Aflv_0106 PF00573 Ribosomal protein L4/L1 family Aflv_0107 PF00276 Ribosomal protein L23 Aflv_0108 PF00181 Ribosomal Proteins L2, RNA binding domain Aflv_0108 PF03947 Ribosomal Proteins L2, C-terminal domain Aflv_0109 PF00203 Ribosomal protein S19 Aflv_0110 PF00237 Ribosomal protein L22p/L17e Aflv_0111 PF07650 KH domain Aflv_0111 PF00189 Ribosomal protein S3, C-terminal domain Aflv_0112 PF00252 Ribosomal protein L16p/L10e Aflv_0113 PF00831 Ribosomal L29 protein Aflv_0114 PF00366 Ribosomal protein S17 Aflv_0115 PF00238 Ribosomal protein L14p/L23e Aflv_0116 PF00467 KOW motif Aflv_0116 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Aflv_0117 PF00281 Ribosomal protein L5 Aflv_0117 PF00673 ribosomal L5P family C-terminus Aflv_0118 PF00253 Ribosomal protein S14p/S29e Aflv_0119 PF00410 Ribosomal protein S8 Aflv_0120 PF00347 Ribosomal protein L6 Aflv_0121 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Aflv_0122 PF00333 Ribosomal protein S5, N-terminal domain Aflv_0122 PF03719 Ribosomal protein S5, C-terminal domain Aflv_0123 PF00327 Ribosomal protein L30p/L7e Aflv_0124 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Aflv_0125 PF00344 SecY translocase Aflv_0126 PF05191 Adenylate kinase, active site lid Aflv_0127 PF00557 Metallopeptidase family M24 Aflv_0128 PF01176 Translation initiation factor 1A / IF-1 Aflv_0129 PF00444 Ribosomal protein L36 Aflv_0130 PF00416 Ribosomal protein S13/S18 Aflv_0131 PF00411 Ribosomal protein S11 Aflv_0132 PF01000 RNA polymerase Rpb3/RpoA insert domain Aflv_0132 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Aflv_0132 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Aflv_0133 PF01196 Ribosomal protein L17 Aflv_0134 PF00005 ABC transporter Aflv_0135 PF00005 ABC transporter Aflv_0136 PF02361 Cobalt transport protein Aflv_0137 PF01416 tRNA pseudouridine synthase Aflv_0138 PF00572 Ribosomal protein L13 Aflv_0139 PF00380 Ribosomal protein S9/S16 Aflv_0141 PF01520 N-acetylmuramoyl-L-alanine amidase Aflv_0142 PF10609 NUBPL iron-transfer P-loop NTPase Aflv_0143 PF17898 Spore germination GerD central core domain Aflv_0144 PF14089 KinB-signalling pathway activation in sporulation Aflv_0145 PF01522 Polysaccharide deacetylase Aflv_0146 PF00491 Arginase family Aflv_0147 PF04542 Sigma-70 region 2 Aflv_0147 PF08281 Sigma-70, region 4 Aflv_0148 PF13490 Putative zinc-finger Aflv_0149 PF02457 DisA bacterial checkpoint controller nucleotide-binding Aflv_0150 PF07949 YbbR-like protein Aflv_0151 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Aflv_0151 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Aflv_0151 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Aflv_0151 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Aflv_0152 PF01380 SIS domain Aflv_0158 PF01553 Acyltransferase Aflv_0160 PF01648 4'-phosphopantetheinyl transferase superfamily Aflv_0166 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Aflv_0171 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_0171 PF07730 Histidine kinase Aflv_0172 PF00072 Response regulator receiver domain Aflv_0172 PF00196 Bacterial regulatory proteins, luxR family Aflv_0173 PF13411 MerR HTH family regulatory protein Aflv_0173 PF07739 TipAS antibiotic-recognition domain Aflv_0176 PF13722 5TM C-terminal transporter carbon starvation CstA Aflv_0176 PF02554 Carbon starvation protein CstA Aflv_0179 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Aflv_0179 PF02770 Acyl-CoA dehydrogenase, middle domain Aflv_0179 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Aflv_0180 PF00501 AMP-binding enzyme Aflv_0180 PF13193 AMP-binding enzyme C-terminal domain Aflv_0181 PF00289 Biotin carboxylase, N-terminal domain Aflv_0181 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Aflv_0181 PF02785 Biotin carboxylase C-terminal domain Aflv_0182 PF00364 Biotin-requiring enzyme Aflv_0183 PF00682 HMGL-like Aflv_0184 PF00378 Enoyl-CoA hydratase/isomerase Aflv_0185 PF01039 Carboxyl transferase domain Aflv_0186 PF11738 Protein of unknown function (DUF3298) Aflv_0186 PF01522 Polysaccharide deacetylase Aflv_0186 PF13739 Deacetylase PdaC Aflv_0188 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase Aflv_0190 PF03323 Bacillus/Clostridium GerA spore germination protein Aflv_0191 PF03845 Spore germination protein Aflv_0192 PF07478 D-ala D-ala ligase C-terminus Aflv_0192 PF01820 D-ala D-ala ligase N-terminus Aflv_0193 PF02875 Mur ligase family, glutamate ligase domain Aflv_0193 PF01225 Mur ligase family, catalytic domain Aflv_0193 PF08245 Mur ligase middle domain Aflv_0194 PF00270 DEAD/DEAH box helicase Aflv_0194 PF00271 Helicase conserved C-terminal domain Aflv_0195 PF01648 4'-phosphopantetheinyl transferase superfamily Aflv_0197 PF00842 Alanine racemase, C-terminal domain Aflv_0197 PF01168 Alanine racemase, N-terminal domain Aflv_0198 PF01402 Ribbon-helix-helix protein, copG family Aflv_0199 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Aflv_0200 PF17674 HHH domain Aflv_0200 PF16921 Tex protein YqgF-like domain Aflv_0200 PF09371 Tex-like protein N-terminal domain Aflv_0200 PF00575 S1 RNA binding domain Aflv_0202 PF10263 SprT-like family Aflv_0203 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Aflv_0204 PF00814 Glycoprotease family Aflv_0205 PF00583 Acetyltransferase (GNAT) family Aflv_0206 PF00814 Glycoprotease family Aflv_0207 PF00005 ABC transporter Aflv_0207 PF12848 ABC transporter Aflv_0207 PF16326 ABC transporter C-terminal domain Aflv_0208 PF06971 Putative DNA-binding protein N-terminus Aflv_0208 PF02629 CoA binding domain Aflv_0210 PF02517 CPBP intramembrane metalloprotease Aflv_0211 PF00166 Chaperonin 10 Kd subunit Aflv_0212 PF00118 TCP-1/cpn60 chaperonin family Aflv_0214 PF01609 Transposase DDE domain Aflv_0216 PF01960 ArgJ family Aflv_0217 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Aflv_0217 PF02843 Phosphoribosylglycinamide synthetase, C domain Aflv_0217 PF02844 Phosphoribosylglycinamide synthetase, N domain Aflv_0220 PF00205 Thiamine pyrophosphate enzyme, central domain Aflv_0220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aflv_0220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Aflv_0222 PF07690 Major Facilitator Superfamily Aflv_0223 PF00583 Acetyltransferase (GNAT) family Aflv_0223 PF00206 Lyase Aflv_0223 PF14698 Argininosuccinate lyase C-terminal Aflv_0225 PF02540 NAD synthase Aflv_0225 PF00958 GMP synthase C terminal domain Aflv_0225 PF00117 Glutamine amidotransferase class-I Aflv_0226 PF00860 Permease family Aflv_0227 PF00011 Hsp20/alpha crystallin family Aflv_0228 PF00731 AIR carboxylase Aflv_0229 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Aflv_0229 PF02222 ATP-grasp domain Aflv_0230 PF00206 Lyase Aflv_0230 PF10397 Adenylosuccinate lyase C-terminus Aflv_0231 PF01259 SAICAR synthetase Aflv_0232 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Aflv_0234 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Aflv_0234 PF02769 AIR synthase related protein, C-terminal domain Aflv_0234 PF00586 AIR synthase related protein, N-terminal domain Aflv_0235 PF00156 Phosphoribosyl transferase domain Aflv_0236 PF00586 AIR synthase related protein, N-terminal domain Aflv_0236 PF02769 AIR synthase related protein, C-terminal domain Aflv_0237 PF00551 Formyl transferase Aflv_0238 PF02142 MGS-like domain Aflv_0238 PF01808 AICARFT/IMPCHase bienzyme Aflv_0239 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Aflv_0239 PF02843 Phosphoribosylglycinamide synthetase, C domain Aflv_0239 PF02844 Phosphoribosylglycinamide synthetase, N domain Aflv_0242 PF13382 Adenine deaminase C-terminal domain Aflv_0242 PF01979 Amidohydrolase family Aflv_0243 PF17479 Protein of unknown function (DUF3048) C-terminal domain Aflv_0243 PF11258 Protein of unknown function (DUF3048) N-terminal domain Aflv_0244 PF01371 Trp repressor protein Aflv_0245 PF01884 PcrB family Aflv_0246 PF00580 UvrD/REP helicase N-terminal domain Aflv_0246 PF13361 UvrD-like helicase C-terminal domain Aflv_0247 PF12826 Helix-hairpin-helix motif Aflv_0247 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Aflv_0247 PF03120 NAD-dependent DNA ligase OB-fold domain Aflv_0247 PF01653 NAD-dependent DNA ligase adenylation domain Aflv_0247 PF00533 BRCA1 C Terminus (BRCT) domain Aflv_0248 PF07537 CamS sex pheromone cAM373 precursor Aflv_0249 PF00171 Aldehyde dehydrogenase family Aflv_0251 PF13358 DDE superfamily endonuclease Aflv_0257 PF13382 Adenine deaminase C-terminal domain Aflv_0257 PF01979 Amidohydrolase family Aflv_0258 PF02686 Glu-tRNAGln amidotransferase C subunit Aflv_0259 PF01425 Amidase Aflv_0260 PF02637 GatB domain Aflv_0260 PF02934 GatB/GatE catalytic domain Aflv_0263 PF03591 AzlC protein Aflv_0271 PF00171 Aldehyde dehydrogenase family Aflv_0272 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Aflv_0273 PF00115 Cytochrome C and Quinol oxidase polypeptide I Aflv_0274 PF00510 Cytochrome c oxidase subunit III Aflv_0275 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Aflv_0278 PF04012 PspA/IM30 family Aflv_0280 PF00989 PAS fold Aflv_0280 PF00512 His Kinase A (phospho-acceptor) domain Aflv_0280 PF18698 Histidine kinase sensor domain Aflv_0280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_0280 PF00672 HAMP domain Aflv_0281 PF00486 Transcriptional regulatory protein, C terminal Aflv_0281 PF00072 Response regulator receiver domain Aflv_0282 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_0284 PF00753 Metallo-beta-lactamase superfamily Aflv_0285 PF07730 Histidine kinase Aflv_0285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_0286 PF00072 Response regulator receiver domain Aflv_0286 PF00196 Bacterial regulatory proteins, luxR family Aflv_0287 PF01925 Sulfite exporter TauE/SafE Aflv_0288 PF00781 Diacylglycerol kinase catalytic domain Aflv_0289 PF02475 Met-10+ like-protein Aflv_0289 PF01938 TRAM domain Aflv_0289 PF05958 tRNA (Uracil-5-)-methyltransferase Aflv_0290 PF07690 Major Facilitator Superfamily Aflv_0292 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_0292 PF08447 PAS fold Aflv_0292 PF13426 PAS domain Aflv_0295 PF08281 Sigma-70, region 4 Aflv_0295 PF04542 Sigma-70 region 2 Aflv_0298 PF02898 Nitric oxide synthase, oxygenase domain Aflv_0299 PF02743 Cache domain Aflv_0299 PF00672 HAMP domain Aflv_0299 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_0301 PF01476 LysM domain Aflv_0301 PF00877 NlpC/P60 family Aflv_0302 PF03741 Integral membrane protein TerC family Aflv_0303 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Aflv_0303 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_0306 PF07670 Nucleoside recognition Aflv_0306 PF02421 Ferrous iron transport protein B Aflv_0306 PF17910 FeoB cytosolic helical domain Aflv_0306 PF07664 Ferrous iron transport protein B C terminus Aflv_0308 PF00708 Acylphosphatase Aflv_0311 PF01903 CbiX Aflv_0312 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Aflv_0314 PF14306 PUA-like domain Aflv_0314 PF01747 ATP-sulfurylase Aflv_0315 PF01384 Phosphate transporter family Aflv_0316 PF01507 Phosphoadenosine phosphosulfate reductase family Aflv_0318 PF06569 Protein of unknown function (DUF1128) Aflv_0319 PF01451 Low molecular weight phosphotyrosine protein phosphatase Aflv_0321 PF03631 Virulence factor BrkB Aflv_0323 PF07690 Major Facilitator Superfamily Aflv_0324 PF01699 Sodium/calcium exchanger protein Aflv_0325 PF14167 YfkD-like protein Aflv_0326 PF08756 YfkB-like domain Aflv_0326 PF04055 Radical SAM superfamily Aflv_0328 PF05683 Fumarase C-terminus Aflv_0328 PF05681 Fumarate hydratase (Fumerase) Aflv_0329 PF01522 Polysaccharide deacetylase Aflv_0330 PF00730 HhH-GPD superfamily base excision DNA repair protein Aflv_0331 PF01938 TRAM domain Aflv_0331 PF05958 tRNA (Uracil-5-)-methyltransferase Aflv_0334 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Aflv_0338 PF00107 Zinc-binding dehydrogenase Aflv_0338 PF08240 Alcohol dehydrogenase GroES-like domain Aflv_0339 PF00672 HAMP domain Aflv_0339 PF12729 Four helix bundle sensory module for signal transduction Aflv_0339 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_0343 PF01979 Amidohydrolase family Aflv_0344 PF01370 NAD dependent epimerase/dehydratase family Aflv_0344 PF08338 Domain of unknown function (DUF1731) Aflv_0345 PF02631 RecX family Aflv_0346 PF00106 short chain dehydrogenase Aflv_0347 PF02652 L-lactate permease Aflv_0348 PF08838 Protein of unknown function (DUF1811) Aflv_0350 PF08176 Small acid-soluble spore protein K family Aflv_0351 PF04307 LexA-binding, inner membrane-associated putative hydrolase Aflv_0352 PF14815 NUDIX domain Aflv_0352 PF00730 HhH-GPD superfamily base excision DNA repair protein Aflv_0352 PF00633 Helix-hairpin-helix motif Aflv_0355 PF04167 Protein of unknown function (DUF402) Aflv_0356 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Aflv_0356 PF00005 ABC transporter Aflv_0357 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Aflv_0357 PF00005 ABC transporter Aflv_0358 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Aflv_0361 PF06081 Aromatic acid exporter family member 1 Aflv_0362 PF04898 Glutamate synthase central domain Aflv_0362 PF01493 GXGXG motif Aflv_0362 PF00310 Glutamine amidotransferases class-II Aflv_0362 PF01645 Conserved region in glutamate synthase Aflv_0363 PF00202 Aminotransferase class-III Aflv_0364 PF00005 ABC transporter Aflv_0367 PF07885 Ion channel Aflv_0368 PF00578 AhpC/TSA family Aflv_0369 PF01475 Ferric uptake regulator family Aflv_0370 PF11023 Zinc-ribbon containing domain Aflv_0371 PF14540 Nucleotidyltransferase-like Aflv_0371 PF18576 Helix-turn-helix domain Aflv_0372 PF16916 Dimerisation domain of Zinc Transporter Aflv_0372 PF01545 Cation efflux family Aflv_0373 PF02806 Alpha amylase, C-terminal all-beta domain Aflv_0373 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Aflv_0373 PF00128 Alpha amylase, catalytic domain Aflv_0375 PF00483 Nucleotidyl transferase Aflv_0376 PF00534 Glycosyl transferases group 1 Aflv_0376 PF08323 Starch synthase catalytic domain Aflv_0377 PF00343 Carbohydrate phosphorylase Aflv_0378 PF01258 Prokaryotic dksA/traR C4-type zinc finger Aflv_0379 PF01040 UbiA prenyltransferase family Aflv_0380 PF00425 chorismate binding enzyme Aflv_0381 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Aflv_0381 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aflv_0381 PF16582 Middle domain of thiamine pyrophosphate Aflv_0382 PF00561 alpha/beta hydrolase fold Aflv_0383 PF00378 Enoyl-CoA hydratase/isomerase Aflv_0384 PF00501 AMP-binding enzyme Aflv_0384 PF13193 AMP-binding enzyme C-terminal domain Aflv_0385 PF02322 Cytochrome bd terminal oxidase subunit II Aflv_0386 PF01654 Cytochrome bd terminal oxidase subunit I Aflv_0387 PF07561 Domain of Unknown Function (DUF1540) Aflv_0390 PF00268 Ribonucleotide reductase, small chain Aflv_0391 PF00258 Flavodoxin Aflv_0392 PF12323 Helix-turn-helix domain Aflv_0392 PF01385 Probable transposase Aflv_0392 PF07282 Putative transposase DNA-binding domain Aflv_0393 PF00317 Ribonucleotide reductase, all-alpha domain Aflv_0393 PF02867 Ribonucleotide reductase, barrel domain Aflv_0393 PF03477 ATP cone domain Aflv_0394 PF02322 Cytochrome bd terminal oxidase subunit II Aflv_0395 PF01654 Cytochrome bd terminal oxidase subunit I Aflv_0396 PF01297 Zinc-uptake complex component A periplasmic Aflv_0396 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Aflv_0397 PF07683 Cobalamin synthesis protein cobW C-terminal domain Aflv_0397 PF02492 CobW/HypB/UreG, nucleotide-binding domain Aflv_0398 PF01809 Putative membrane protein insertion efficiency factor Aflv_0399 PF02664 S-Ribosylhomocysteinase (LuxS) Aflv_0401 PF00210 Ferritin-like domain Aflv_0403 PF00293 NUDIX domain Aflv_0404 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_0405 PF00005 ABC transporter Aflv_0407 PF10763 Protein of unknown function (DUF2584) Aflv_0409 PF00005 ABC transporter Aflv_0410 PF02361 Cobalt transport protein Aflv_0411 PF13190 PDGLE domain Aflv_0411 PF01891 Cobalt uptake substrate-specific transmembrane region Aflv_0413 PF01293 Phosphoenolpyruvate carboxykinase Aflv_0414 PF00438 S-adenosylmethionine synthetase, N-terminal domain Aflv_0414 PF02773 S-adenosylmethionine synthetase, C-terminal domain Aflv_0414 PF02772 S-adenosylmethionine synthetase, central domain Aflv_0415 PF01569 PAP2 superfamily Aflv_0416 PF00132 Bacterial transferase hexapeptide (six repeats) Aflv_0417 PF12146 Serine aminopeptidase, S33 Aflv_0418 PF10776 Protein of unknown function (DUF2600) Aflv_0420 PF06962 Putative rRNA methylase Aflv_0421 PF04055 Radical SAM superfamily Aflv_0421 PF16199 Radical_SAM C-terminal domain Aflv_0422 PF10732 Protein of unknown function (DUF2524) Aflv_0425 PF13603 Leucyl-tRNA synthetase, Domain 2 Aflv_0425 PF00133 tRNA synthetases class I (I, L, M and V) Aflv_0425 PF08264 Anticodon-binding domain of tRNA Aflv_0425 PF09334 tRNA synthetases class I (M) Aflv_0426 PF00581 Rhodanese-like domain Aflv_0428 PF01943 Polysaccharide biosynthesis protein Aflv_0428 PF14667 Polysaccharide biosynthesis C-terminal domain Aflv_0430 PF00849 RNA pseudouridylate synthase Aflv_0430 PF01479 S4 domain Aflv_0431 PF08220 DeoR-like helix-turn-helix domain Aflv_0432 PF01546 Peptidase family M20/M25/M40 Aflv_0433 PF12832 MFS_1 like family Aflv_0434 PF02834 LigT like Phosphoesterase Aflv_0435 PF03788 LrgA family Aflv_0436 PF04172 LrgB-like family Aflv_0438 PF17999 Pullulanase N1-terminal domain Aflv_0438 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Aflv_0438 PF00128 Alpha amylase, catalytic domain Aflv_0439 PF01636 Phosphotransferase enzyme family Aflv_0440 PF14165 YtzH-like protein Aflv_0441 PF02390 Putative methyltransferase Aflv_0442 PF00753 Metallo-beta-lactamase superfamily Aflv_0444 PF05343 M42 glutamyl aminopeptidase Aflv_0445 PF01931 Protein of unknown function DUF84 Aflv_0446 PF00085 Thioredoxin Aflv_0447 PF07285 Protein of unknown function (DUF1444) Aflv_0448 PF01588 Putative tRNA binding domain Aflv_0448 PF14794 Domain of unknown function (DUF4479) Aflv_0449 PF09397 Ftsk gamma domain Aflv_0449 PF17854 FtsK alpha domain Aflv_0449 PF09397 Ftsk gamma domain Aflv_0449 PF01580 FtsK/SpoIIIE family Aflv_0449 PF01580 FtsK/SpoIIIE family Aflv_0449 PF17854 FtsK alpha domain Aflv_0451 PF01225 Mur ligase family, catalytic domain Aflv_0451 PF02875 Mur ligase family, glutamate ligase domain Aflv_0451 PF08245 Mur ligase middle domain Aflv_0452 PF11009 Protein of unknown function (DUF2847) Aflv_0454 PF06103 Bacterial protein of unknown function (DUF948) Aflv_0455 PF02073 Thermophilic metalloprotease (M29) Aflv_0456 PF02491 SHS2 domain inserted in FTSA Aflv_0457 PF01817 Chorismate mutase type II Aflv_0457 PF00793 DAHP synthetase I family Aflv_0458 PF00356 Bacterial regulatory proteins, lacI family Aflv_0459 PF00850 Histone deacetylase domain Aflv_0460 PF00571 CBS domain Aflv_0461 PF00583 Acetyltransferase (GNAT) family Aflv_0462 PF13193 AMP-binding enzyme C-terminal domain Aflv_0462 PF00501 AMP-binding enzyme Aflv_0463 PF00912 Transglycosylase Aflv_0463 PF00905 Penicillin binding protein transpeptidase domain Aflv_0464 PF00579 tRNA synthetases class I (W and Y) Aflv_0464 PF01479 S4 domain Aflv_0465 PF01479 S4 domain Aflv_0465 PF00163 Ribosomal protein S4/S9 N-terminal domain Aflv_0466 PF00990 Diguanylate cyclase, GGDEF domain Aflv_0467 PF13185 GAF domain Aflv_0468 PF02811 PHP domain Aflv_0469 PF06160 Septation ring formation regulator, EzrA Aflv_0470 PF05525 Branched-chain amino acid transport protein Aflv_0471 PF00266 Aminotransferase class-V Aflv_0472 PF02568 Thiamine biosynthesis protein (ThiI) Aflv_0472 PF02926 THUMP domain Aflv_0473 PF00269 Small, acid-soluble spore proteins, alpha/beta type Aflv_0474 PF13193 AMP-binding enzyme C-terminal domain Aflv_0474 PF00501 AMP-binding enzyme Aflv_0475 PF01513 ATP-NAD kinase Aflv_0477 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Aflv_0478 PF08534 Redoxin Aflv_0479 PF02384 N-6 DNA Methylase Aflv_0480 PF00871 Acetokinase family Aflv_0482 PF00764 Arginosuccinate synthase Aflv_0483 PF14698 Argininosuccinate lyase C-terminal Aflv_0483 PF00206 Lyase Aflv_0484 PF00582 Universal stress protein family Aflv_0487 PF00557 Metallopeptidase family M24 Aflv_0487 PF01321 Creatinase/Prolidase N-terminal domain Aflv_0489 PF07085 DRTGG domain Aflv_0489 PF00571 CBS domain Aflv_0489 PF03061 Thioesterase superfamily Aflv_0489 PF00392 Bacterial regulatory proteins, gntR family Aflv_0490 PF14007 YtpI-like protein Aflv_0491 PF02272 DHHA1 domain Aflv_0491 PF01368 DHH family Aflv_0493 PF14034 Sporulation protein YtrH Aflv_0494 PF02811 PHP domain Aflv_0494 PF07733 Bacterial DNA polymerase III alpha NTPase domain Aflv_0494 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Aflv_0494 PF14579 Helix-hairpin-helix motif Aflv_0494 PF01336 OB-fold nucleic acid binding domain Aflv_0495 PF00390 Malic enzyme, N-terminal domain Aflv_0495 PF03949 Malic enzyme, NAD binding domain Aflv_0496 PF00392 Bacterial regulatory proteins, gntR family Aflv_0496 PF07729 FCD domain Aflv_0497 PF17848 Acetyl-coA carboxylase zinc finger domain Aflv_0497 PF01039 Carboxyl transferase domain Aflv_0498 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Aflv_0499 PF00365 Phosphofructokinase Aflv_0500 PF00391 PEP-utilising enzyme, mobile domain Aflv_0500 PF02887 Pyruvate kinase, alpha/beta domain Aflv_0500 PF00224 Pyruvate kinase, barrel domain Aflv_0501 PF04186 FxsA cytoplasmic membrane protein Aflv_0502 PF01594 AI-2E family transporter Aflv_0503 PF04284 Protein of unknown function (DUF441) Aflv_0504 PF00285 Citrate synthase, C-terminal domain Aflv_0505 PF00180 Isocitrate/isopropylmalate dehydrogenase Aflv_0506 PF00056 lactate/malate dehydrogenase, NAD binding domain Aflv_0506 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Aflv_0508 PF00486 Transcriptional regulatory protein, C terminal Aflv_0508 PF00072 Response regulator receiver domain Aflv_0509 PF00512 His Kinase A (phospho-acceptor) domain Aflv_0509 PF00989 PAS fold Aflv_0509 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_0509 PF16736 Single Cache-like Aflv_0510 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Aflv_0510 PF00476 DNA polymerase family A Aflv_0510 PF01367 5'-3' exonuclease, C-terminal SAM fold Aflv_0511 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Aflv_0511 PF06827 Zinc finger found in FPG and IleRS Aflv_0511 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Aflv_0512 PF02659 Putative manganese efflux pump Aflv_0513 PF01121 Dephospho-CoA kinase Aflv_0514 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Aflv_0514 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Aflv_0515 PF02675 S-adenosylmethionine decarboxylase Aflv_0517 PF03477 ATP cone domain Aflv_0518 PF07261 Replication initiation and membrane attachment Aflv_0519 PF01695 IstB-like ATP binding protein Aflv_0519 PF07319 Primosomal protein DnaI N-terminus Aflv_0520 PF08812 YtxC-like family Aflv_0521 PF02824 TGS domain Aflv_0521 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Aflv_0521 PF03129 Anticodon binding domain Aflv_0521 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Aflv_0522 PF05198 Translation initiation factor IF-3, N-terminal domain Aflv_0522 PF00707 Translation initiation factor IF-3, C-terminal domain Aflv_0523 PF01632 Ribosomal protein L35 Aflv_0524 PF00453 Ribosomal protein L20 Aflv_0527 PF05343 M42 glutamyl aminopeptidase Aflv_0528 PF00392 Bacterial regulatory proteins, gntR family Aflv_0529 PF00596 Class II Aldolase and Adducin N-terminal domain Aflv_0530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aflv_0530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aflv_0531 PF11762 L-arabinose isomerase C-terminal domain Aflv_0531 PF02610 L-arabinose isomerase Aflv_0532 PF04616 Glycosyl hydrolases family 43 Aflv_0533 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Aflv_0538 PF01263 Aldose 1-epimerase Aflv_0539 PF14098 Small, acid-soluble spore protein I Aflv_0540 PF01625 Peptide methionine sulfoxide reductase Aflv_0541 PF08032 RNA 2'-O ribose methyltransferase substrate binding Aflv_0541 PF00588 SpoU rRNA Methylase family Aflv_0542 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Aflv_0542 PF01409 tRNA synthetases class II core domain (F) Aflv_0543 PF03484 tRNA synthetase B5 domain Aflv_0543 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Aflv_0543 PF03483 B3/4 domain Aflv_0543 PF01588 Putative tRNA binding domain Aflv_0543 PF03147 Ferredoxin-fold anticodon binding domain Aflv_0549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_0549 PF07730 Histidine kinase Aflv_0550 PF00072 Response regulator receiver domain Aflv_0550 PF00196 Bacterial regulatory proteins, luxR family Aflv_0554 PF12679 ABC-2 family transporter protein Aflv_0557 PF03176 MMPL family Aflv_0558 PF05164 Cell division protein ZapA Aflv_0559 PF02674 Colicin V production protein Aflv_0560 PF14791 DNA polymerase beta thumb Aflv_0560 PF14716 Helix-hairpin-helix domain Aflv_0560 PF02811 PHP domain Aflv_0561 PF00488 MutS domain V Aflv_0561 PF01713 Smr domain Aflv_0562 PF03994 Domain of Unknown Function (DUF350) Aflv_0564 PF13193 AMP-binding enzyme C-terminal domain Aflv_0564 PF00501 AMP-binding enzyme Aflv_0565 PF08359 YsiA-like protein, C-terminal region Aflv_0565 PF00440 Bacterial regulatory proteins, tetR family Aflv_0566 PF00378 Enoyl-CoA hydratase/isomerase Aflv_0567 PF01012 Electron transfer flavoprotein domain Aflv_0568 PF01012 Electron transfer flavoprotein domain Aflv_0568 PF00766 Electron transfer flavoprotein FAD-binding domain Aflv_0569 PF00085 Thioredoxin Aflv_0571 PF01370 NAD dependent epimerase/dehydratase family Aflv_0574 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 Aflv_0574 PF00535 Glycosyl transferase family 2 Aflv_0578 PF08459 UvrC Helix-hairpin-helix N-terminal Aflv_0578 PF02151 UvrB/uvrC motif Aflv_0578 PF01541 GIY-YIG catalytic domain Aflv_0579 PF10702 Protein of unknown function (DUF2507) Aflv_0580 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Aflv_0581 PF00890 FAD binding domain Aflv_0581 PF02910 Fumarate reductase flavoprotein C-term Aflv_0582 PF13085 2Fe-2S iron-sulfur cluster binding domain Aflv_0582 PF13183 4Fe-4S dicluster domain Aflv_0583 PF03061 Thioesterase superfamily Aflv_0584 PF00196 Bacterial regulatory proteins, luxR family Aflv_0585 PF01177 Asp/Glu/Hydantoin racemase Aflv_0586 PF10646 Sporulation and spore germination Aflv_0587 PF01138 3' exoribonuclease family, domain 1 Aflv_0587 PF03725 3' exoribonuclease family, domain 2 Aflv_0588 PF01725 Ham1 family Aflv_0589 PF12850 Calcineurin-like phosphoesterase superfamily domain Aflv_0590 PF01063 Amino-transferase class IV Aflv_0591 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Aflv_0591 PF00205 Thiamine pyrophosphate enzyme, central domain Aflv_0591 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aflv_0592 PF10369 Small subunit of acetolactate synthase Aflv_0592 PF01842 ACT domain Aflv_0593 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Aflv_0593 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Aflv_0594 PF08502 LeuA allosteric (dimerisation) domain Aflv_0594 PF00682 HMGL-like Aflv_0595 PF00180 Isocitrate/isopropylmalate dehydrogenase Aflv_0596 PF00330 Aconitase family (aconitate hydratase) Aflv_0597 PF00694 Aconitase C-terminal domain Aflv_0599 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Aflv_0599 PF05698 Bacterial trigger factor protein (TF) C-terminus Aflv_0599 PF05697 Bacterial trigger factor protein (TF) Aflv_0600 PF07724 AAA domain (Cdc48 subfamily) Aflv_0600 PF10431 C-terminal, D2-small domain, of ClpB protein Aflv_0600 PF06689 ClpX C4-type zinc finger Aflv_0601 PF05362 Lon protease (S16) C-terminal proteolytic domain Aflv_0601 PF00004 ATPase family associated with various cellular activities (AAA) Aflv_0602 PF02190 ATP-dependent protease La (LON) substrate-binding domain Aflv_0602 PF05362 Lon protease (S16) C-terminal proteolytic domain Aflv_0602 PF00004 ATPase family associated with various cellular activities (AAA) Aflv_0603 PF01926 50S ribosome-binding GTPase Aflv_0605 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Aflv_0605 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Aflv_0605 PF01488 Shikimate / quinate 5-dehydrogenase Aflv_0606 PF01578 Cytochrome C assembly protein Aflv_0607 PF03900 Porphobilinogen deaminase, C-terminal domain Aflv_0607 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Aflv_0608 PF02602 Uroporphyrinogen-III synthase HemD Aflv_0609 PF00490 Delta-aminolevulinic acid dehydratase Aflv_0610 PF00202 Aminotransferase class-III Aflv_0611 PF01476 LysM domain Aflv_0611 PF01476 LysM domain Aflv_0614 PF10458 Valyl tRNA synthetase tRNA binding arm Aflv_0614 PF00133 tRNA synthetases class I (I, L, M and V) Aflv_0614 PF08264 Anticodon-binding domain of tRNA Aflv_0615 PF08245 Mur ligase middle domain Aflv_0615 PF02875 Mur ligase family, glutamate ligase domain Aflv_0624 PF00437 Type II/IV secretion system protein Aflv_0625 PF00437 Type II/IV secretion system protein Aflv_0626 PF00482 Type II secretion system (T2SS), protein F Aflv_0627 PF00114 Pilin (bacterial filament) Aflv_0627 PF07963 Prokaryotic N-terminal methylation motif Aflv_0628 PF06750 Bacterial Peptidase A24 N-terminal domain Aflv_0628 PF01478 Type IV leader peptidase family Aflv_0634 PF02545 Maf-like protein Aflv_0636 PF02796 Helix-turn-helix domain of resolvase Aflv_0636 PF00239 Resolvase, N terminal domain Aflv_0637 PF01726 LexA DNA binding domain Aflv_0637 PF00717 Peptidase S24-like Aflv_0658 PF08281 Sigma-70, region 4 Aflv_0680 PF13539 D-alanyl-D-alanine carboxypeptidase Aflv_0685 PF01580 FtsK/SpoIIIE family Aflv_0688 PF04085 rod shape-determining protein MreC Aflv_0690 PF03775 Septum formation inhibitor MinC, C-terminal domain Aflv_0691 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Aflv_0692 PF01551 Peptidase family M23 Aflv_0693 PF02163 Peptidase family M50 Aflv_0694 PF00829 Ribosomal prokaryotic L21 protein Aflv_0695 PF04327 Cysteine protease Prp Aflv_0696 PF01016 Ribosomal L27 protein Aflv_0697 PF14682 Sporulation initiation phospho-transferase B, C-terminal Aflv_0697 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Aflv_0698 PF09269 Domain of unknown function (DUF1967) Aflv_0698 PF01926 50S ribosome-binding GTPase Aflv_0698 PF01018 GTP1/OBG Aflv_0699 PF01842 ACT domain Aflv_0700 PF00800 Prephenate dehydratase Aflv_0700 PF01842 ACT domain Aflv_0701 PF08279 HTH domain Aflv_0701 PF02829 3H domain Aflv_0702 PF00266 Aminotransferase class-V Aflv_0703 PF02910 Fumarate reductase flavoprotein C-term Aflv_0703 PF00890 FAD binding domain Aflv_0704 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Aflv_0704 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Aflv_0705 PF02445 Quinolinate synthetase A protein Aflv_0706 PF01476 LysM domain Aflv_0707 PF02540 NAD synthase Aflv_0708 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Aflv_0709 PF01709 Transcriptional regulator Aflv_0710 PF08955 BofC C-terminal domain Aflv_0710 PF08977 Bypass of Forespore C, N terminal Aflv_0711 PF01330 RuvA N terminal domain Aflv_0711 PF07499 RuvA, C-terminal domain Aflv_0712 PF05496 Holliday junction DNA helicase RuvB P-loop domain Aflv_0712 PF05491 RuvB C-terminal winged helix domain Aflv_0712 PF17864 RuvB AAA lid domain Aflv_0713 PF12323 Helix-turn-helix domain Aflv_0713 PF01385 Probable transposase Aflv_0713 PF07282 Putative transposase DNA-binding domain Aflv_0714 PF11146 Protein of unknown function (DUF2905) Aflv_0715 PF02547 Queuosine biosynthesis protein Aflv_0716 PF01702 Queuine tRNA-ribosyltransferase Aflv_0717 PF02699 Preprotein translocase subunit Aflv_0718 PF12670 Protein of unknown function (DUF3792) Aflv_0719 PF04239 Protein of unknown function (DUF421) Aflv_0720 PF01943 Polysaccharide biosynthesis protein Aflv_0720 PF14667 Polysaccharide biosynthesis C-terminal domain Aflv_0721 PF13797 Post-transcriptional regulator Aflv_0722 PF02355 Protein export membrane protein Aflv_0722 PF07549 SecD/SecF GG Motif Aflv_0723 PF01545 Cation efflux family Aflv_0723 PF16916 Dimerisation domain of Zinc Transporter Aflv_0724 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Aflv_0724 PF17768 RecJ OB domain Aflv_0724 PF01368 DHH family Aflv_0724 PF02272 DHHA1 domain Aflv_0725 PF00156 Phosphoribosyl transferase domain Aflv_0726 PF04607 Region found in RelA / SpoT proteins Aflv_0726 PF02824 TGS domain Aflv_0726 PF13291 ACT domain Aflv_0727 PF02580 D-Tyr-tRNA(Tyr) deacylase Aflv_0729 PF08239 Bacterial SH3 domain Aflv_0729 PF01520 N-acetylmuramoyl-L-alanine amidase Aflv_0730 PF13393 Histidyl-tRNA synthetase Aflv_0730 PF03129 Anticodon binding domain Aflv_0731 PF02938 GAD domain Aflv_0731 PF00152 tRNA synthetases class II (D, K and N) Aflv_0731 PF01336 OB-fold nucleic acid binding domain Aflv_0732 PF00899 ThiF family Aflv_0733 PF00873 AcrB/AcrD/AcrF family Aflv_0734 PF00440 Bacterial regulatory proteins, tetR family Aflv_0735 PF16193 AAA C-terminal domain Aflv_0735 PF12002 MgsA AAA+ ATPase C terminal Aflv_0735 PF05496 Holliday junction DNA helicase RuvB P-loop domain Aflv_0736 PF02082 Transcriptional regulator Aflv_0737 PF00266 Aminotransferase class-V Aflv_0740 PF14490 Helix-hairpin-helix containing domain Aflv_0740 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Aflv_0740 PF13538 UvrD-like helicase C-terminal domain Aflv_0742 PF13056 Protein of unknown function (DUF3918) Aflv_0743 PF01594 AI-2E family transporter Aflv_0744 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Aflv_0744 PF01411 tRNA synthetases class II (A) Aflv_0744 PF02272 DHHA1 domain Aflv_0745 PF06135 IreB regulatory phosphoprotein Aflv_0746 PF03652 Holliday junction resolvase Aflv_0747 PF06949 Protein of unknown function (DUF1292) Aflv_0748 PF02618 YceG-like family Aflv_0752 PF00485 Phosphoribulokinase / Uridine kinase family Aflv_0753 PF03449 Transcription elongation factor, N-terminal Aflv_0753 PF01272 Transcription elongation factor, GreA/GreB, C-term Aflv_0754 PF00905 Penicillin binding protein transpeptidase domain Aflv_0754 PF03717 Penicillin-binding Protein dimerisation domain Aflv_0755 PF07423 Domain of unknown function (DUF1510) Aflv_0757 PF10750 Protein of unknown function (DUF2536) Aflv_0758 PF13649 Methyltransferase domain Aflv_0759 PF01048 Phosphorylase superfamily Aflv_0760 PF00291 Pyridoxal-phosphate dependent enzyme Aflv_0761 PF01053 Cys/Met metabolism PLP-dependent enzyme Aflv_0763 PF00565 Staphylococcal nuclease homologue Aflv_0768 PF18395 Cas3 C-terminal domain Aflv_0768 PF18019 HD domain Aflv_0768 PF00270 DEAD/DEAH box helicase Aflv_0770 PF01867 CRISPR associated protein Cas1 Aflv_0771 PF09827 CRISPR associated protein Cas2 Aflv_0778 PF01381 Helix-turn-helix Aflv_0803 PF13408 Recombinase zinc beta ribbon domain Aflv_0803 PF00239 Resolvase, N terminal domain Aflv_0803 PF07508 Recombinase Aflv_0804 PF04542 Sigma-70 region 2 Aflv_0804 PF04545 Sigma-70, region 4 Aflv_0805 PF02386 Cation transport protein Aflv_0806 PF13677 Membrane MotB of proton-channel complex MotA/MotB Aflv_0806 PF00691 OmpA family Aflv_0807 PF01618 MotA/TolQ/ExbB proton channel family Aflv_0808 PF01066 CDP-alcohol phosphatidyltransferase Aflv_0809 PF02666 Phosphatidylserine decarboxylase Aflv_0810 PF08970 Sporulation inhibitor A Aflv_0812 PF01926 50S ribosome-binding GTPase Aflv_0813 PF01488 Shikimate / quinate 5-dehydrogenase Aflv_0813 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Aflv_0813 PF08501 Shikimate dehydrogenase substrate binding domain Aflv_0814 PF01985 CRS1 / YhbY (CRM) domain Aflv_0815 PF01467 Cytidylyltransferase-like Aflv_0816 PF01966 HD domain Aflv_0818 PF13649 Methyltransferase domain Aflv_0819 PF14748 Pyrroline-5-carboxylate reductase dimerisation Aflv_0819 PF03807 NADP oxidoreductase coenzyme F420-dependent Aflv_0820 PF10531 SLBB domain Aflv_0821 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Aflv_0823 PF13567 Domain of unknown function (DUF4131) Aflv_0823 PF00753 Metallo-beta-lactamase superfamily Aflv_0823 PF03772 Competence protein Aflv_0824 PF14141 YqzM-like protein Aflv_0825 PF06144 DNA polymerase III, delta subunit Aflv_0826 PF00027 Cyclic nucleotide-binding domain Aflv_0826 PF00325 Bacterial regulatory proteins, crp family Aflv_0827 PF01649 Ribosomal protein S20 Aflv_0828 PF03418 Germination protease Aflv_0829 PF07454 Stage II sporulation protein P (SpoIIP) Aflv_0831 PF00679 Elongation factor G C-terminus Aflv_0831 PF00009 Elongation factor Tu GTP binding domain Aflv_0831 PF03144 Elongation factor Tu domain 2 Aflv_0831 PF06421 GTP-binding protein LepA C-terminus Aflv_0832 PF06969 HemN C-terminal domain Aflv_0832 PF04055 Radical SAM superfamily Aflv_0833 PF01628 HrcA protein C terminal domain Aflv_0834 PF01025 GrpE Aflv_0835 PF00012 Hsp70 protein Aflv_0836 PF00226 DnaJ domain Aflv_0836 PF00684 DnaJ central domain Aflv_0836 PF01556 DnaJ C terminal domain Aflv_0838 PF04452 RNA methyltransferase Aflv_0839 PF00919 Uncharacterized protein family UPF0004 Aflv_0839 PF04055 Radical SAM superfamily Aflv_0839 PF01938 TRAM domain Aflv_0840 PF01165 Ribosomal protein S21 Aflv_0841 PF09424 Yqey-like protein Aflv_0842 PF01957 NfeD-like C-terminal, partner-binding Aflv_0842 PF01972 Serine dehydrogenase proteinase Aflv_0843 PF12127 SigmaW regulon antibacterial Aflv_0845 PF07873 YabP family Aflv_0846 PF06898 Putative stage IV sporulation protein YqfD Aflv_0847 PF02562 PhoH-like protein Aflv_0848 PF02130 Uncharacterized protein family UPF0054 Aflv_0849 PF01219 Prokaryotic diacylglycerol kinase Aflv_0850 PF01926 50S ribosome-binding GTPase Aflv_0850 PF07650 KH domain Aflv_0851 PF14006 YqzL-like protein Aflv_0852 PF11967 Recombination protein O N terminal Aflv_0852 PF02565 Recombination protein O C terminal Aflv_0853 PF00571 CBS domain Aflv_0853 PF08279 HTH domain Aflv_0854 PF03618 Kinase/pyrophosphorylase Aflv_0855 PF08275 DNA primase catalytic core, N-terminal domain Aflv_0855 PF10410 DnaB-helicase binding domain of primase Aflv_0855 PF01807 CHC2 zinc finger Aflv_0856 PF03979 Sigma-70 factor, region 1.1 Aflv_0856 PF04545 Sigma-70, region 4 Aflv_0856 PF00140 Sigma-70 factor, region 1.2 Aflv_0856 PF04539 Sigma-70 region 3 Aflv_0856 PF04542 Sigma-70 region 2 Aflv_0858 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Aflv_0859 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Aflv_0860 PF01784 NIF3 (NGG1p interacting factor 3) Aflv_0861 PF02401 LytB protein Aflv_0863 PF00271 Helicase conserved C-terminal domain Aflv_0863 PF00270 DEAD/DEAH box helicase Aflv_0864 PF01261 Xylose isomerase-like TIM barrel Aflv_0866 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Aflv_0866 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Aflv_0867 PF00005 ABC transporter Aflv_0868 PF00950 ABC 3 transport family Aflv_0869 PF01475 Ferric uptake regulator family Aflv_0872 PF04551 GcpE protein Aflv_0874 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_0874 PF00672 HAMP domain Aflv_0874 PF02743 Cache domain Aflv_0875 PF06691 Protein of unknown function (DUF1189) Aflv_0876 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Aflv_0876 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Aflv_0877 PF07690 Major Facilitator Superfamily Aflv_0879 PF12849 PBP superfamily domain Aflv_0880 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_0881 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_0882 PF00005 ABC transporter Aflv_0883 PF01895 PhoU domain Aflv_0886 PF00483 Nucleotidyl transferase Aflv_0887 PF00471 Ribosomal protein L33 Aflv_0888 PF01812 5-formyltetrahydrofolate cyclo-ligase family Aflv_0889 PF00056 lactate/malate dehydrogenase, NAD binding domain Aflv_0889 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Aflv_0891 PF01694 Rhomboid family Aflv_0893 PF03323 Bacillus/Clostridium GerA spore germination protein Aflv_0894 PF06014 Bacterial protein of unknown function (DUF910) Aflv_0895 PF00480 ROK family Aflv_0896 PF00884 Sulfatase Aflv_0897 PF01476 LysM domain Aflv_0897 PF00246 Zinc carboxypeptidase Aflv_0899 PF00753 Metallo-beta-lactamase superfamily Aflv_0901 PF11117 Protein of unknown function (DUF2626) Aflv_0903 PF03960 ArsC family Aflv_0904 PF00437 Type II/IV secretion system protein Aflv_0905 PF00482 Type II secretion system (T2SS), protein F Aflv_0906 PF07963 Prokaryotic N-terminal methylation motif Aflv_0907 PF07963 Prokaryotic N-terminal methylation motif Aflv_0911 PF01202 Shikimate kinase Aflv_0912 PF14038 YqzE-like protein Aflv_0913 PF11079 Bacterial protein YqhG of unknown function Aflv_0914 PF00271 Helicase conserved C-terminal domain Aflv_0914 PF00176 SNF2 family N-terminal domain Aflv_0915 PF08669 Glycine cleavage T-protein C-terminal barrel domain Aflv_0915 PF01571 Aminomethyltransferase folate-binding domain Aflv_0916 PF02347 Glycine cleavage system P-protein Aflv_0918 PF00581 Rhodanese-like domain Aflv_0919 PF03099 Biotin/lipoate A/B protein ligase family Aflv_0923 PF01325 Iron dependent repressor, N-terminal DNA binding domain Aflv_0923 PF02742 Iron dependent repressor, metal binding and dimerisation domain Aflv_0924 PF01734 Patatin-like phospholipase Aflv_0926 PF07136 Protein of unknown function (DUF1385) Aflv_0927 PF11085 Conserved membrane protein YqhR Aflv_0928 PF01220 Dehydroquinase class II Aflv_0929 PF01321 Creatinase/Prolidase N-terminal domain Aflv_0929 PF00557 Metallopeptidase family M24 Aflv_0930 PF08207 Elongation factor P (EF-P) KOW-like domain Aflv_0930 PF01132 Elongation factor P (EF-P) OB domain Aflv_0930 PF09285 Elongation factor P, C-terminal Aflv_0931 PF10942 Protein of unknown function (DUF2619) Aflv_0933 PF09548 Stage III sporulation protein AB (spore_III_AB) Aflv_0934 PF06686 Stage III sporulation protein AC/AD protein family Aflv_0935 PF06686 Stage III sporulation protein AC/AD protein family Aflv_0936 PF09546 Stage III sporulation protein AE (spore_III_AE) Aflv_0937 PF09581 Stage III sporulation protein AF (Spore_III_AF) Aflv_0939 PF12685 SpoIIIAH-like protein Aflv_0940 PF00364 Biotin-requiring enzyme Aflv_0941 PF02785 Biotin carboxylase C-terminal domain Aflv_0941 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Aflv_0941 PF00289 Biotin carboxylase, N-terminal domain Aflv_0942 PF03780 Asp23 family, cell envelope-related function Aflv_0943 PF01029 NusB family Aflv_0944 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Aflv_0944 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Aflv_0945 PF02601 Exonuclease VII, large subunit Aflv_0945 PF13742 OB-fold nucleic acid binding domain Aflv_0946 PF02609 Exonuclease VII small subunit Aflv_0947 PF00348 Polyprenyl synthetase Aflv_0948 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Aflv_0948 PF02779 Transketolase, pyrimidine binding domain Aflv_0948 PF02780 Transketolase, C-terminal domain Aflv_0949 PF01479 S4 domain Aflv_0949 PF01728 FtsJ-like methyltransferase Aflv_0950 PF01316 Arginine repressor, DNA binding domain Aflv_0950 PF02863 Arginine repressor, C-terminal domain Aflv_0951 PF13476 AAA domain Aflv_0952 PF17820 PDZ domain Aflv_0952 PF05580 SpoIVB peptidase S55 Aflv_0953 PF00072 Response regulator receiver domain Aflv_0953 PF08769 Sporulation initiation factor Spo0A C terminal Aflv_0954 PF14174 YycC-like protein Aflv_0955 PF03009 Glycerophosphoryl diester phosphodiesterase family Aflv_0956 PF11118 Protein of unknown function (DUF2627) Aflv_0957 PF00158 Sigma-54 interaction domain Aflv_0957 PF00989 PAS fold Aflv_0957 PF02954 Bacterial regulatory protein, Fis family Aflv_0958 PF01515 Phosphate acetyl/butaryl transferase Aflv_0959 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Aflv_0959 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Aflv_0960 PF00871 Acetokinase family Aflv_0961 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_0961 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Aflv_0962 PF00676 Dehydrogenase E1 component Aflv_0963 PF02780 Transketolase, C-terminal domain Aflv_0963 PF02779 Transketolase, pyrimidine binding domain Aflv_0964 PF02817 e3 binding domain Aflv_0964 PF00364 Biotin-requiring enzyme Aflv_0964 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Aflv_0965 PF01642 Methylmalonyl-CoA mutase Aflv_0966 PF02310 B12 binding domain Aflv_0966 PF01642 Methylmalonyl-CoA mutase Aflv_0968 PF06081 Aromatic acid exporter family member 1 Aflv_0968 PF11728 Putative aromatic acid exporter C-terminal domain Aflv_0969 PF03734 L,D-transpeptidase catalytic domain Aflv_0971 PF01039 Carboxyl transferase domain Aflv_0973 PF01546 Peptidase family M20/M25/M40 Aflv_0973 PF07687 Peptidase dimerisation domain Aflv_0974 PF01584 CheW-like domain Aflv_0976 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Aflv_0976 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Aflv_0977 PF04199 Putative cyclase Aflv_0978 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Aflv_0978 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Aflv_0979 PF12706 Beta-lactamase superfamily domain Aflv_0979 PF00753 Metallo-beta-lactamase superfamily Aflv_0981 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Aflv_0982 PF14748 Pyrroline-5-carboxylate reductase dimerisation Aflv_0982 PF03807 NADP oxidoreductase coenzyme F420-dependent Aflv_0983 PF00753 Metallo-beta-lactamase superfamily Aflv_0984 PF00106 short chain dehydrogenase Aflv_0985 PF01521 Iron-sulphur cluster biosynthesis Aflv_0987 PF10827 Protein of unknown function (DUF2552) Aflv_0990 PF00248 Aldo/keto reductase family Aflv_0991 PF00293 NUDIX domain Aflv_0992 PF01944 Stage II sporulation protein M Aflv_0994 PF12323 Helix-turn-helix domain Aflv_0994 PF01385 Probable transposase Aflv_0994 PF07282 Putative transposase DNA-binding domain Aflv_0995 PF01475 Ferric uptake regulator family Aflv_0996 PF14004 Protein of unknown function (DUF4227) Aflv_0997 PF02899 Phage integrase, N-terminal SAM-like domain Aflv_0997 PF00589 Phage integrase family Aflv_0998 PF01676 Metalloenzyme superfamily Aflv_0999 PF01048 Phosphorylase superfamily Aflv_1000 PF00591 Glycosyl transferase family, a/b domain Aflv_1000 PF02885 Glycosyl transferase family, helical bundle domain Aflv_1000 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Aflv_1001 PF00768 D-alanyl-D-alanine carboxypeptidase Aflv_1001 PF07943 Penicillin-binding protein 5, C-terminal domain Aflv_1002 PF01740 STAS domain Aflv_1003 PF13581 Histidine kinase-like ATPase domain Aflv_1004 PF04545 Sigma-70, region 4 Aflv_1004 PF04539 Sigma-70 region 3 Aflv_1004 PF04542 Sigma-70 region 2 Aflv_1005 PF12164 Stage V sporulation protein AA Aflv_1006 PF13782 Stage V sporulation protein AB Aflv_1008 PF07451 Stage V sporulation protein AD (SpoVAD) Aflv_1009 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Aflv_1010 PF14097 Stage V sporulation protein AE1 Aflv_1011 PF03323 Bacillus/Clostridium GerA spore germination protein Aflv_1012 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Aflv_1012 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Aflv_1013 PF06207 Protein of unknown function (DUF1002) Aflv_1014 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Aflv_1015 PF01872 RibD C-terminal domain Aflv_1015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Aflv_1016 PF00677 Lumazine binding domain Aflv_1017 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Aflv_1017 PF00925 GTP cyclohydrolase II Aflv_1018 PF00885 6,7-dimethyl-8-ribityllumazine synthase Aflv_1019 PF00583 Acetyltransferase (GNAT) family Aflv_1020 PF03745 Domain of unknown function (DUF309) Aflv_1021 PF02616 Segregation and condensation protein ScpA Aflv_1022 PF04079 Segregation and condensation complex subunit ScpB Aflv_1024 PF01212 Beta-eliminating lyase Aflv_1026 PF18603 L-amino acid ligase C-terminal domain 2 Aflv_1026 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Aflv_1030 PF13047 Protein of unknown function (DUF3907) Aflv_1031 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Aflv_1031 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Aflv_1032 PF00768 D-alanyl-D-alanine carboxypeptidase Aflv_1032 PF07943 Penicillin-binding protein 5, C-terminal domain Aflv_1033 PF07670 Nucleoside recognition Aflv_1034 PF07670 Nucleoside recognition Aflv_1035 PF01479 S4 domain Aflv_1035 PF00849 RNA pseudouridylate synthase Aflv_1036 PF00578 AhpC/TSA family Aflv_1037 PF05140 ResB-like family Aflv_1038 PF01578 Cytochrome C assembly protein Aflv_1039 PF00486 Transcriptional regulatory protein, C terminal Aflv_1039 PF00072 Response regulator receiver domain Aflv_1040 PF00672 HAMP domain Aflv_1040 PF00989 PAS fold Aflv_1040 PF00512 His Kinase A (phospho-acceptor) domain Aflv_1040 PF18698 Histidine kinase sensor domain Aflv_1040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1041 PF01497 Periplasmic binding protein Aflv_1042 PF01032 FecCD transport family Aflv_1043 PF00005 ABC transporter Aflv_1044 PF03186 CobD/Cbib protein Aflv_1045 PF00155 Aminotransferase class I and II Aflv_1047 PF02654 Cobalamin-5-phosphate synthase Aflv_1050 PF01923 Cobalamin adenosyltransferase Aflv_1054 PF02811 PHP domain Aflv_1055 PF01842 ACT domain Aflv_1055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Aflv_1055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aflv_1056 PF00719 Inorganic pyrophosphatase Aflv_1058 PF14493 Helix-turn-helix domain Aflv_1059 PF00271 Helicase conserved C-terminal domain Aflv_1059 PF00270 DEAD/DEAH box helicase Aflv_1060 PF02517 CPBP intramembrane metalloprotease Aflv_1062 PF10864 Protein of unknown function (DUF2663) Aflv_1064 PF00149 Calcineurin-like phosphoesterase Aflv_1065 PF13411 MerR HTH family regulatory protein Aflv_1066 PF05389 Negative regulator of genetic competence (MecA) Aflv_1067 PF02585 GlcNAc-PI de-N-acetylase Aflv_1068 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Aflv_1068 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Aflv_1071 PF00202 Aminotransferase class-III Aflv_1072 PF03413 Peptidase propeptide and YPEB domain Aflv_1072 PF14620 YpeB sporulation Aflv_1073 PF01471 Putative peptidoglycan binding domain Aflv_1073 PF07486 Cell Wall Hydrolase Aflv_1074 PF13367 PrsW family intramembrane metalloprotease Aflv_1075 PF07238 PilZ domain Aflv_1075 PF12945 Flagellar protein YcgR Aflv_1077 PF02224 Cytidylate kinase Aflv_1078 PF01553 Acyltransferase Aflv_1079 PF00575 S1 RNA binding domain Aflv_1080 PF01070 FMN-dependent dehydrogenase Aflv_1081 PF14140 YpzI-like protein Aflv_1083 PF14045 YIEGIA protein Aflv_1085 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Aflv_1085 PF01926 50S ribosome-binding GTPase Aflv_1086 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Aflv_1086 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Aflv_1087 PF10966 Protein of unknown function (DUF2768) Aflv_1089 PF09547 Stage IV sporulation protein A (spore_IV_A) Aflv_1090 PF00216 Bacterial DNA-binding protein Aflv_1091 PF01227 GTP cyclohydrolase I Aflv_1092 PF02081 Tryptophan RNA-binding attenuator protein Aflv_1093 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 Aflv_1094 PF01209 ubiE/COQ5 methyltransferase family Aflv_1095 PF00348 Polyprenyl synthetase Aflv_1096 PF00334 Nucleoside diphosphate kinase Aflv_1097 PF03705 CheR methyltransferase, all-alpha domain Aflv_1097 PF01739 CheR methyltransferase, SAM binding domain Aflv_1098 PF01264 Chorismate synthase Aflv_1099 PF01761 3-dehydroquinate synthase Aflv_1100 PF07736 Chorismate mutase type I Aflv_1101 PF04715 Anthranilate synthase component I, N terminal region Aflv_1101 PF00425 chorismate binding enzyme Aflv_1102 PF00591 Glycosyl transferase family, a/b domain Aflv_1102 PF02885 Glycosyl transferase family, helical bundle domain Aflv_1103 PF00218 Indole-3-glycerol phosphate synthase Aflv_1104 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Aflv_1105 PF00291 Pyridoxal-phosphate dependent enzyme Aflv_1106 PF00290 Tryptophan synthase alpha chain Aflv_1107 PF00155 Aminotransferase class I and II Aflv_1108 PF02153 Prephenate dehydrogenase Aflv_1108 PF01842 ACT domain Aflv_1109 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Aflv_1111 PF08858 IDEAL domain Aflv_1111 PF08864 UPF0302 domain Aflv_1112 PF10673 Protein of unknown function (DUF2487) Aflv_1113 PF00355 Rieske [2Fe-2S] domain Aflv_1114 PF00033 Cytochrome b/b6/petB Aflv_1115 PF00032 Cytochrome b(C-terminal)/b6/petD Aflv_1115 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Aflv_1116 PF07187 Protein of unknown function (DUF1405) Aflv_1117 PF09577 Sporulation protein YpjB (SpoYpjB) Aflv_1118 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Aflv_1118 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Aflv_1119 PF03819 MazG nucleotide pyrophosphohydrolase domain Aflv_1120 PF05173 Dihydrodipicolinate reductase, C-terminus Aflv_1120 PF01113 Dihydrodipicolinate reductase, N-terminus Aflv_1121 PF02142 MGS-like domain Aflv_1122 PF02585 GlcNAc-PI de-N-acetylase Aflv_1123 PF13439 Glycosyltransferase Family 4 Aflv_1123 PF00534 Glycosyl transferases group 1 Aflv_1124 PF13735 tRNA nucleotidyltransferase domain 2 putative Aflv_1124 PF12627 Probable RNA and SrmB- binding site of polymerase A Aflv_1124 PF01743 Poly A polymerase head domain Aflv_1125 PF02237 Biotin protein ligase C terminal domain Aflv_1125 PF03099 Biotin/lipoate A/B protein ligase family Aflv_1125 PF08279 HTH domain Aflv_1126 PF02548 Ketopantoate hydroxymethyltransferase Aflv_1127 PF02569 Pantoate-beta-alanine ligase Aflv_1128 PF02261 Aspartate decarboxylase Aflv_1129 PF13307 Helicase C-terminal domain Aflv_1129 PF00929 Exonuclease Aflv_1129 PF04851 Type III restriction enzyme, res subunit Aflv_1131 PF14084 Protein of unknown function (DUF4264) Aflv_1133 PF00155 Aminotransferase class I and II Aflv_1134 PF01336 OB-fold nucleic acid binding domain Aflv_1134 PF00152 tRNA synthetases class II (D, K and N) Aflv_1135 PF07261 Replication initiation and membrane attachment Aflv_1136 PF00730 HhH-GPD superfamily base excision DNA repair protein Aflv_1136 PF00633 Helix-hairpin-helix motif Aflv_1136 PF10576 Iron-sulfur binding domain of endonuclease III Aflv_1139 PF00912 Transglycosylase Aflv_1139 PF00905 Penicillin binding protein transpeptidase domain Aflv_1140 PF03838 Recombination protein U Aflv_1141 PF00916 Sulfate permease family Aflv_1141 PF01740 STAS domain Aflv_1149 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Aflv_1149 PF01266 FAD dependent oxidoreductase Aflv_1150 PF12787 EcsC protein family Aflv_1151 PF00011 Hsp20/alpha crystallin family Aflv_1154 PF00990 Diguanylate cyclase, GGDEF domain Aflv_1154 PF07694 5TMR of 5TMR-LYT Aflv_1155 PF02073 Thermophilic metalloprotease (M29) Aflv_1157 PF02595 Glycerate kinase family Aflv_1158 PF00990 Diguanylate cyclase, GGDEF domain Aflv_1158 PF03707 Bacterial signalling protein N terminal repeat Aflv_1158 PF00563 EAL domain Aflv_1159 PF00005 ABC transporter Aflv_1160 PF01497 Periplasmic binding protein Aflv_1161 PF01032 FecCD transport family Aflv_1162 PF01032 FecCD transport family Aflv_1163 PF00155 Aminotransferase class I and II Aflv_1164 PF00561 alpha/beta hydrolase fold Aflv_1165 PF13847 Methyltransferase domain Aflv_1166 PF02675 S-adenosylmethionine decarboxylase Aflv_1167 PF02254 TrkA-N domain Aflv_1167 PF00999 Sodium/hydrogen exchanger family Aflv_1167 PF02080 TrkA-C domain Aflv_1169 PF04851 Type III restriction enzyme, res subunit Aflv_1169 PF00271 Helicase conserved C-terminal domain Aflv_1173 PF00580 UvrD/REP helicase N-terminal domain Aflv_1173 PF13361 UvrD-like helicase C-terminal domain Aflv_1174 PF01555 DNA methylase Aflv_1177 PF13180 PDZ domain Aflv_1179 PF13333 Integrase core domain Aflv_1179 PF00665 Integrase core domain Aflv_1179 PF13276 HTH-like domain Aflv_1180 PF12833 Helix-turn-helix domain Aflv_1181 PF13378 Enolase C-terminal domain-like Aflv_1181 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Aflv_1182 PF00171 Aldehyde dehydrogenase family Aflv_1183 PF00206 Lyase Aflv_1183 PF10415 Fumarase C C-terminus Aflv_1184 PF00171 Aldehyde dehydrogenase family Aflv_1185 PF08240 Alcohol dehydrogenase GroES-like domain Aflv_1185 PF00107 Zinc-binding dehydrogenase Aflv_1186 PF00465 Iron-containing alcohol dehydrogenase Aflv_1187 PF02028 BCCT, betaine/carnitine/choline family transporter Aflv_1191 PF01555 DNA methylase Aflv_1192 PF02086 D12 class N6 adenine-specific DNA methyltransferase Aflv_1198 PF01546 Peptidase family M20/M25/M40 Aflv_1198 PF07687 Peptidase dimerisation domain Aflv_1200 PF00141 Peroxidase Aflv_1202 PF02673 Bacitracin resistance protein BacA Aflv_1203 PF12464 Maltose acetyltransferase Aflv_1203 PF14602 Hexapeptide repeat of succinyl-transferase Aflv_1205 PF03323 Bacillus/Clostridium GerA spore germination protein Aflv_1206 PF05504 Spore germination B3/ GerAC like, C-terminal Aflv_1207 PF03845 Spore germination protein Aflv_1208 PF00248 Aldo/keto reductase family Aflv_1209 PF01522 Polysaccharide deacetylase Aflv_1213 PF08244 Glycosyl hydrolases family 32 C terminal Aflv_1213 PF00251 Glycosyl hydrolases family 32 N-terminal domain Aflv_1217 PF02583 Metal-sensitive transcriptional repressor Aflv_1218 PF00403 Heavy-metal-associated domain Aflv_1219 PF00403 Heavy-metal-associated domain Aflv_1220 PF00403 Heavy-metal-associated domain Aflv_1225 PF13537 Glutamine amidotransferase domain Aflv_1225 PF00733 Asparagine synthase Aflv_1229 PF00171 Aldehyde dehydrogenase family Aflv_1232 PF04138 GtrA-like protein Aflv_1233 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_1233 PF00672 HAMP domain Aflv_1234 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aflv_1234 PF03466 LysR substrate binding domain Aflv_1235 PF01493 GXGXG motif Aflv_1235 PF00310 Glutamine amidotransferases class-II Aflv_1235 PF01645 Conserved region in glutamate synthase Aflv_1235 PF04898 Glutamate synthase central domain Aflv_1236 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_1236 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Aflv_1238 PF00920 Dehydratase family Aflv_1240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Aflv_1240 PF02770 Acyl-CoA dehydrogenase, middle domain Aflv_1240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Aflv_1241 PF02515 CoA-transferase family III Aflv_1242 PF00202 Aminotransferase class-III Aflv_1243 PF00171 Aldehyde dehydrogenase family Aflv_1244 PF13520 Amino acid permease Aflv_1245 PF00205 Thiamine pyrophosphate enzyme, central domain Aflv_1245 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Aflv_1245 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Aflv_1246 PF00171 Aldehyde dehydrogenase family Aflv_1247 PF03435 Saccharopine dehydrogenase NADP binding domain Aflv_1247 PF16653 Saccharopine dehydrogenase C-terminal domain Aflv_1248 PF01012 Electron transfer flavoprotein domain Aflv_1249 PF01012 Electron transfer flavoprotein domain Aflv_1249 PF00766 Electron transfer flavoprotein FAD-binding domain Aflv_1257 PF12697 Alpha/beta hydrolase family Aflv_1262 PF07690 Major Facilitator Superfamily Aflv_1263 PF01609 Transposase DDE domain Aflv_1264 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Aflv_1264 PF01367 5'-3' exonuclease, C-terminal SAM fold Aflv_1266 PF01497 Periplasmic binding protein Aflv_1267 PF01032 FecCD transport family Aflv_1268 PF01032 FecCD transport family Aflv_1269 PF00005 ABC transporter Aflv_1271 PF00171 Aldehyde dehydrogenase family Aflv_1272 PF01472 PUA domain Aflv_1272 PF00696 Amino acid kinase family Aflv_1274 PF00005 ABC transporter Aflv_1274 PF13732 Domain of unknown function (DUF4162) Aflv_1278 PF13193 AMP-binding enzyme C-terminal domain Aflv_1278 PF00501 AMP-binding enzyme Aflv_1279 PF09278 MerR, DNA binding Aflv_1279 PF00376 MerR family regulatory protein Aflv_1280 PF00501 AMP-binding enzyme Aflv_1280 PF13193 AMP-binding enzyme C-terminal domain Aflv_1281 PF18158 Adaptive response protein AidB N-terminal domain Aflv_1281 PF02770 Acyl-CoA dehydrogenase, middle domain Aflv_1281 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Aflv_1282 PF03006 Haemolysin-III related Aflv_1288 PF13520 Amino acid permease Aflv_1289 PF01297 Zinc-uptake complex component A periplasmic Aflv_1290 PF00005 ABC transporter Aflv_1291 PF00950 ABC 3 transport family Aflv_1292 PF00950 ABC 3 transport family Aflv_1294 PF07690 Major Facilitator Superfamily Aflv_1297 PF05816 Toxic anion resistance protein (TelA) Aflv_1299 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Aflv_1299 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_1301 PF07690 Major Facilitator Superfamily Aflv_1302 PF02386 Cation transport protein Aflv_1304 PF00672 HAMP domain Aflv_1304 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_1304 PF17202 Single cache domain 3 Aflv_1308 PF02743 Cache domain Aflv_1308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1308 PF06580 Histidine kinase Aflv_1308 PF00672 HAMP domain Aflv_1309 PF00072 Response regulator receiver domain Aflv_1309 PF04397 LytTr DNA-binding domain Aflv_1310 PF13407 Periplasmic binding protein domain Aflv_1311 PF00005 ABC transporter Aflv_1312 PF02653 Branched-chain amino acid transport system / permease component Aflv_1313 PF13378 Enolase C-terminal domain-like Aflv_1313 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Aflv_1315 PF07293 Protein of unknown function (DUF1450) Aflv_1320 PF00583 Acetyltransferase (GNAT) family Aflv_1321 PF00583 Acetyltransferase (GNAT) family Aflv_1321 PF00795 Carbon-nitrogen hydrolase Aflv_1322 PF00255 Glutathione peroxidase Aflv_1323 PF01636 Phosphotransferase enzyme family Aflv_1324 PF13439 Glycosyltransferase Family 4 Aflv_1324 PF00534 Glycosyl transferases group 1 Aflv_1326 PF00664 ABC transporter transmembrane region Aflv_1326 PF00005 ABC transporter Aflv_1327 PF00005 ABC transporter Aflv_1327 PF00664 ABC transporter transmembrane region Aflv_1328 PF12706 Beta-lactamase superfamily domain Aflv_1332 PF00909 Ammonium Transporter Family Aflv_1334 PF13307 Helicase C-terminal domain Aflv_1334 PF04851 Type III restriction enzyme, res subunit Aflv_1334 PF00929 Exonuclease Aflv_1335 PF01022 Bacterial regulatory protein, arsR family Aflv_1336 PF00403 Heavy-metal-associated domain Aflv_1337 PF00563 EAL domain Aflv_1337 PF00990 Diguanylate cyclase, GGDEF domain Aflv_1337 PF03707 Bacterial signalling protein N terminal repeat Aflv_1341 PF00005 ABC transporter Aflv_1342 PF00300 Histidine phosphatase superfamily (branch 1) Aflv_1343 PF05901 Excalibur calcium-binding domain Aflv_1343 PF00565 Staphylococcal nuclease homologue Aflv_1344 PF03063 Prismane/CO dehydrogenase family Aflv_1345 PF02110 Hydroxyethylthiazole kinase family Aflv_1346 PF02581 Thiamine monophosphate synthase Aflv_1347 PF00378 Enoyl-CoA hydratase/isomerase Aflv_1348 PF13426 PAS domain Aflv_1348 PF07228 Stage II sporulation protein E (SpoIIE) Aflv_1352 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_1353 PF11122 Inner spore coat protein D Aflv_1354 PF05103 DivIVA protein Aflv_1355 PF00563 EAL domain Aflv_1355 PF03707 Bacterial signalling protein N terminal repeat Aflv_1355 PF00990 Diguanylate cyclase, GGDEF domain Aflv_1356 PF02926 THUMP domain Aflv_1356 PF01170 Putative RNA methylase family UPF0020 Aflv_1357 PF13307 Helicase C-terminal domain Aflv_1358 PF02074 Carboxypeptidase Taq (M32) metallopeptidase Aflv_1359 PF00115 Cytochrome C and Quinol oxidase polypeptide I Aflv_1360 PF09125 Cytochrome C oxidase subunit II, transmembrane Aflv_1360 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Aflv_1363 PF02797 Chalcone and stilbene synthases, C-terminal domain Aflv_1363 PF00195 Chalcone and stilbene synthases, N-terminal domain Aflv_1364 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family Aflv_1365 PF00350 Dynamin family Aflv_1366 PF10752 Protein of unknown function (DUF2533) Aflv_1368 PF00578 AhpC/TSA family Aflv_1369 PF13040 Fur-regulated basic protein B Aflv_1370 PF08177 Small acid-soluble spore protein N family Aflv_1372 PF03061 Thioesterase superfamily Aflv_1373 PF01521 Iron-sulphur cluster biosynthesis Aflv_1375 PF01494 FAD binding domain Aflv_1376 PF04055 Radical SAM superfamily Aflv_1376 PF06968 Biotin and Thiamin Synthesis associated domain Aflv_1377 PF14162 YozD-like protein Aflv_1378 PF07070 SpoOM protein Aflv_1379 PF14191 YodL-like Aflv_1382 PF01048 Phosphorylase superfamily Aflv_1383 PF02557 D-alanyl-D-alanine carboxypeptidase Aflv_1385 PF13726 Na+-H+ antiporter family Aflv_1385 PF03553 Na+/H+ antiporter family Aflv_1386 PF01545 Cation efflux family Aflv_1386 PF16916 Dimerisation domain of Zinc Transporter Aflv_1387 PF00892 EamA-like transporter family Aflv_1388 PF01554 MatE Aflv_1389 PF01235 Sodium:alanine symporter family Aflv_1390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1390 PF00512 His Kinase A (phospho-acceptor) domain Aflv_1390 PF00989 PAS fold Aflv_1391 PF10842 Protein of unknown function (DUF2642) Aflv_1392 PF05067 Manganese containing catalase Aflv_1393 PF00291 Pyridoxal-phosphate dependent enzyme Aflv_1393 PF13291 ACT domain Aflv_1397 PF00392 Bacterial regulatory proteins, gntR family Aflv_1398 PF00005 ABC transporter Aflv_1400 PF01136 Peptidase family U32 Aflv_1400 PF12392 Collagenase Aflv_1402 PF00313 'Cold-shock' DNA-binding domain Aflv_1403 PF03951 Glutamine synthetase, beta-Grasp domain Aflv_1403 PF00120 Glutamine synthetase, catalytic domain Aflv_1404 PF13472 GDSL-like Lipase/Acylhydrolase family Aflv_1405 PF00005 ABC transporter Aflv_1406 PF12679 ABC-2 family transporter protein Aflv_1407 PF00293 NUDIX domain Aflv_1409 PF01693 Caulimovirus viroplasmin Aflv_1410 PF07683 Cobalamin synthesis protein cobW C-terminal domain Aflv_1410 PF02492 CobW/HypB/UreG, nucleotide-binding domain Aflv_1412 PF01022 Bacterial regulatory protein, arsR family Aflv_1413 PF02040 Arsenical pump membrane protein Aflv_1414 PF01451 Low molecular weight phosphotyrosine protein phosphatase Aflv_1415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aflv_1415 PF03466 LysR substrate binding domain Aflv_1416 PF00892 EamA-like transporter family Aflv_1418 PF00106 short chain dehydrogenase Aflv_1419 PF00005 ABC transporter Aflv_1423 PF13411 MerR HTH family regulatory protein Aflv_1424 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Aflv_1424 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_1424 PF00403 Heavy-metal-associated domain Aflv_1426 PF13358 DDE superfamily endonuclease Aflv_1430 PF01235 Sodium:alanine symporter family Aflv_1431 PF00092 von Willebrand factor type A domain Aflv_1432 PF07728 AAA domain (dynein-related subfamily) Aflv_1433 PF02583 Metal-sensitive transcriptional repressor Aflv_1434 PF02334 Replication terminator protein Aflv_1435 PF00551 Formyl transferase Aflv_1435 PF01842 ACT domain Aflv_1436 PF01226 Formate/nitrite transporter Aflv_1437 PF17284 Spermidine synthase tetramerisation domain Aflv_1438 PF00471 Ribosomal protein L33 Aflv_1439 PF00392 Bacterial regulatory proteins, gntR family Aflv_1439 PF07702 UTRA domain Aflv_1440 PF00128 Alpha amylase, catalytic domain Aflv_1440 PF16657 Maltogenic Amylase, C-terminal domain Aflv_1441 PF02378 Phosphotransferase system, EIIC Aflv_1441 PF00367 phosphotransferase system, EIIB Aflv_1443 PF03989 DNA gyrase C-terminal domain, beta-propeller Aflv_1443 PF00521 DNA gyrase/topoisomerase IV, subunit A Aflv_1444 PF01751 Toprim domain Aflv_1444 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1444 PF00204 DNA gyrase B Aflv_1444 PF00986 DNA gyrase B subunit, carboxyl terminus Aflv_1445 PF13380 CoA binding domain Aflv_1446 PF02660 Glycerol-3-phosphate acyltransferase Aflv_1447 PF01189 16S rRNA methyltransferase RsmB/F Aflv_1447 PF17126 RsmF rRNA methyltransferase first C-terminal domain Aflv_1447 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Aflv_1449 PF13472 GDSL-like Lipase/Acylhydrolase family Aflv_1450 PF02630 SCO1/SenC Aflv_1451 PF02645 Uncharacterised protein, DegV family COG1307 Aflv_1452 PF10751 Protein of unknown function (DUF2535) Aflv_1453 PF00585 C-terminal regulatory domain of Threonine dehydratase Aflv_1453 PF00291 Pyridoxal-phosphate dependent enzyme Aflv_1454 PF00186 Dihydrofolate reductase Aflv_1455 PF00303 Thymidylate synthase Aflv_1456 PF00902 Sec-independent protein translocase protein (TatC) Aflv_1457 PF02416 mttA/Hcf106 family Aflv_1459 PF00375 Sodium:dicarboxylate symporter family Aflv_1462 PF04445 Putative SAM-dependent methyltransferase Aflv_1463 PF06491 Disulphide isomerase Aflv_1464 PF04204 Homoserine O-succinyltransferase Aflv_1465 PF07690 Major Facilitator Superfamily Aflv_1467 PF01209 ubiE/COQ5 methyltransferase family Aflv_1469 PF03737 Aldolase/RraA Aflv_1470 PF04307 LexA-binding, inner membrane-associated putative hydrolase Aflv_1472 PF08447 PAS fold Aflv_1472 PF13426 PAS domain Aflv_1472 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_1473 PF02602 Uroporphyrinogen-III synthase HemD Aflv_1474 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1474 PF00512 His Kinase A (phospho-acceptor) domain Aflv_1474 PF00989 PAS fold Aflv_1474 PF13188 PAS domain Aflv_1474 PF13426 PAS domain Aflv_1475 PF00258 Flavodoxin Aflv_1476 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Aflv_1476 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Aflv_1477 PF00294 pfkB family carbohydrate kinase Aflv_1478 PF08220 DeoR-like helix-turn-helix domain Aflv_1478 PF00455 DeoR C terminal sensor domain Aflv_1479 PF01966 HD domain Aflv_1479 PF00072 Response regulator receiver domain Aflv_1480 PF17248 Family of unknown function (DUF5317) Aflv_1481 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Aflv_1481 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Aflv_1482 PF04309 Glycerol-3-phosphate responsive antiterminator Aflv_1483 PF01894 Uncharacterised protein family UPF0047 Aflv_1485 PF00313 'Cold-shock' DNA-binding domain Aflv_1488 PF02592 Putative vitamin uptake transporter Aflv_1490 PF02681 Divergent PAP2 family Aflv_1492 PF00694 Aconitase C-terminal domain Aflv_1492 PF00330 Aconitase family (aconitate hydratase) Aflv_1496 PF08179 Small acid-soluble spore protein P family Aflv_1497 PF11084 Protein of unknown function (DUF2621) Aflv_1498 PF07301 Protein of unknown function (DUF1453) Aflv_1499 PF00072 Response regulator receiver domain Aflv_1500 PF02683 Cytochrome C biogenesis protein transmembrane region Aflv_1501 PF03672 Uncharacterised protein family (UPF0154) Aflv_1502 PF00456 Transketolase, thiamine diphosphate binding domain Aflv_1502 PF02779 Transketolase, pyrimidine binding domain Aflv_1502 PF02780 Transketolase, C-terminal domain Aflv_1503 PF05979 Bacterial protein of unknown function (DUF896) Aflv_1504 PF00239 Resolvase, N terminal domain Aflv_1505 PF01476 LysM domain Aflv_1506 PF00717 Peptidase S24-like Aflv_1506 PF01726 LexA DNA binding domain Aflv_1507 PF00120 Glutamine synthetase, catalytic domain Aflv_1507 PF03951 Glutamine synthetase, beta-Grasp domain Aflv_1508 PF13411 MerR HTH family regulatory protein Aflv_1509 PF06838 Methionine gamma-lyase Aflv_1510 PF01926 50S ribosome-binding GTPase Aflv_1510 PF13167 GTP-binding GTPase N-terminal Aflv_1510 PF16360 GTP-binding GTPase Middle Region Aflv_1511 PF03458 UPF0126 domain Aflv_1512 PF02803 Thiolase, C-terminal domain Aflv_1512 PF00108 Thiolase, N-terminal domain Aflv_1513 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Aflv_1513 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aflv_1514 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Aflv_1514 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Aflv_1514 PF02770 Acyl-CoA dehydrogenase, middle domain Aflv_1515 PF13193 AMP-binding enzyme C-terminal domain Aflv_1515 PF00501 AMP-binding enzyme Aflv_1516 PF00004 ATPase family associated with various cellular activities (AAA) Aflv_1516 PF17866 AAA lid domain Aflv_1517 PF17209 Hfq protein Aflv_1519 PF01119 DNA mismatch repair protein, C-terminal domain Aflv_1519 PF08676 MutL C terminal dimerisation domain Aflv_1520 PF00488 MutS domain V Aflv_1520 PF01624 MutS domain I Aflv_1520 PF05190 MutS family domain IV Aflv_1520 PF05188 MutS domain II Aflv_1520 PF05192 MutS domain III Aflv_1521 PF10628 Outer spore coat protein E (CotE) Aflv_1522 PF06133 Control of competence regulator ComK, YlbF/YmcA Aflv_1523 PF00919 Uncharacterized protein family UPF0004 Aflv_1523 PF01938 TRAM domain Aflv_1523 PF04055 Radical SAM superfamily Aflv_1524 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Aflv_1525 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Aflv_1525 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Aflv_1525 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Aflv_1526 PF01244 Membrane dipeptidase (Peptidase family M19) Aflv_1527 PF04232 Stage V sporulation protein S (SpoVS) Aflv_1528 PF13277 YmdB-like protein Aflv_1529 PF00013 KH domain Aflv_1529 PF12072 Domain of unknown function (DUF3552) Aflv_1529 PF01966 HD domain Aflv_1530 PF00154 recA bacterial DNA recombination protein Aflv_1531 PF02464 Competence-damaged protein Aflv_1531 PF18146 Damage-inducible protein CinA KH domain Aflv_1531 PF00994 Probable molybdopterin binding domain Aflv_1532 PF01066 CDP-alcohol phosphatidyltransferase Aflv_1533 PF13464 Domain of unknown function (DUF4115) Aflv_1534 PF11868 Protein of unknown function (DUF3388) Aflv_1535 PF11588 Protein of unknown function (DUF3243) Aflv_1537 PF00675 Insulinase (Peptidase family M16) Aflv_1537 PF05193 Peptidase M16 inactive domain Aflv_1538 PF05193 Peptidase M16 inactive domain Aflv_1539 PF00291 Pyridoxal-phosphate dependent enzyme Aflv_1542 PF02096 60Kd inner membrane protein Aflv_1544 PF13411 MerR HTH family regulatory protein Aflv_1547 PF10057 Uncharacterized conserved protein (DUF2294) Aflv_1550 PF01266 FAD dependent oxidoreductase Aflv_1552 PF13685 Iron-containing alcohol dehydrogenase Aflv_1556 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Aflv_1557 PF00989 PAS fold Aflv_1557 PF00512 His Kinase A (phospho-acceptor) domain Aflv_1557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1560 PF01022 Bacterial regulatory protein, arsR family Aflv_1562 PF01232 Mannitol dehydrogenase Rossmann domain Aflv_1562 PF08125 Mannitol dehydrogenase C-terminal domain Aflv_1563 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Aflv_1564 PF08279 HTH domain Aflv_1564 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Aflv_1564 PF00874 PRD domain Aflv_1564 PF05043 Mga helix-turn-helix domain Aflv_1564 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Aflv_1566 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Aflv_1566 PF02378 Phosphotransferase system, EIIC Aflv_1567 PF00188 Cysteine-rich secretory protein family Aflv_1569 PF01614 Bacterial transcriptional regulator Aflv_1569 PF09339 IclR helix-turn-helix domain Aflv_1570 PF01274 Malate synthase Aflv_1571 PF00440 Bacterial regulatory proteins, tetR family Aflv_1571 PF13977 BetI-type transcriptional repressor, C-terminal Aflv_1573 PF00005 ABC transporter Aflv_1573 PF13732 Domain of unknown function (DUF4162) Aflv_1576 PF07486 Cell Wall Hydrolase Aflv_1577 PF04405 Domain of Unknown function (DUF542) Aflv_1577 PF01814 Hemerythrin HHE cation binding domain Aflv_1578 PF01047 MarR family Aflv_1579 PF07681 DoxX Aflv_1580 PF17954 Quercetinase C-terminal cupin domain Aflv_1580 PF02678 Pirin Aflv_1581 PF07690 Major Facilitator Superfamily Aflv_1582 PF01268 Formate--tetrahydrofolate ligase Aflv_1584 PF00248 Aldo/keto reductase family Aflv_1585 PF10086 YhfC intramembrane metalloprotease Aflv_1586 PF13630 SdpI/YhfL protein family Aflv_1586 PF07853 Protein of unknown function (DUF1648) Aflv_1587 PF01022 Bacterial regulatory protein, arsR family Aflv_1588 PF01906 Putative heavy-metal-binding Aflv_1589 PF00893 Small Multidrug Resistance protein Aflv_1590 PF03009 Glycerophosphoryl diester phosphodiesterase family Aflv_1591 PF13416 Bacterial extracellular solute-binding protein Aflv_1592 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_1593 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_1594 PF00005 ABC transporter Aflv_1594 PF08402 TOBE domain Aflv_1595 PF04309 Glycerol-3-phosphate responsive antiterminator Aflv_1596 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Aflv_1596 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Aflv_1597 PF00667 FAD binding domain Aflv_1597 PF00175 Oxidoreductase NAD-binding domain Aflv_1597 PF00258 Flavodoxin Aflv_1598 PF03466 LysR substrate binding domain Aflv_1598 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Aflv_1599 PF08141 Small acid-soluble spore protein H family Aflv_1601 PF02146 Sir2 family Aflv_1602 PF03703 Bacterial PH domain Aflv_1603 PF03703 Bacterial PH domain Aflv_1604 PF00171 Aldehyde dehydrogenase family Aflv_1606 PF16123 Hydroxyacylglutathione hydrolase C-terminus Aflv_1606 PF00753 Metallo-beta-lactamase superfamily Aflv_1607 PF05675 Protein of unknown function (DUF817) Aflv_1608 PF13443 Cro/C1-type HTH DNA-binding domain Aflv_1609 PF11188 Protein of unknown function (DUF2975) Aflv_1612 PF02661 Fic/DOC family Aflv_1614 PF08818 Domain of unknown function (DU1801) Aflv_1615 PF13614 AAA domain Aflv_1617 PF00578 AhpC/TSA family Aflv_1618 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like Aflv_1622 PF01323 DSBA-like thioredoxin domain Aflv_1624 PF13769 Virulence factor Aflv_1624 PF08712 Scaffold protein Nfu/NifU N terminal Aflv_1626 PF09297 NADH pyrophosphatase zinc ribbon domain Aflv_1626 PF00293 NUDIX domain Aflv_1634 PF00665 Integrase core domain Aflv_1634 PF13276 HTH-like domain Aflv_1634 PF13333 Integrase core domain Aflv_1644 PF13358 DDE superfamily endonuclease Aflv_1650 PF01964 Radical SAM ThiC family Aflv_1650 PF13667 ThiC-associated domain Aflv_1651 PF06039 Malate:quinone oxidoreductase (Mqo) Aflv_1653 PF17151 Periplasmic sensor domain Aflv_1653 PF00990 Diguanylate cyclase, GGDEF domain Aflv_1657 PF00916 Sulfate permease family Aflv_1657 PF01740 STAS domain Aflv_1658 PF00582 Universal stress protein family Aflv_1660 PF09587 Bacterial capsule synthesis protein PGA_cap Aflv_1661 PF02447 GntP family permease Aflv_1662 PF01609 Transposase DDE domain Aflv_1669 PF09299 Mu transposase, C-terminal Aflv_1669 PF00665 Integrase core domain Aflv_1671 PF01619 Proline dehydrogenase Aflv_1676 PF07702 UTRA domain Aflv_1676 PF00392 Bacterial regulatory proteins, gntR family Aflv_1677 PF01580 FtsK/SpoIIIE family Aflv_1677 PF09397 Ftsk gamma domain Aflv_1677 PF17854 FtsK alpha domain Aflv_1679 PF00574 Clp protease Aflv_1680 PF00753 Metallo-beta-lactamase superfamily Aflv_1680 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Aflv_1680 PF17770 Ribonuclease J C-terminal domain Aflv_1681 PF00701 Dihydrodipicolinate synthetase family Aflv_1682 PF00696 Amino acid kinase family Aflv_1682 PF13840 ACT domain Aflv_1683 PF02774 Semialdehyde dehydrogenase, dimerisation domain Aflv_1683 PF01118 Semialdehyde dehydrogenase, NAD binding domain Aflv_1684 PF02441 Flavoprotein Aflv_1685 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Aflv_1685 PF16924 Dipicolinate synthase subunit A N-terminal domain Aflv_1686 PF05239 PRC-barrel domain Aflv_1687 PF00675 Insulinase (Peptidase family M16) Aflv_1687 PF05193 Peptidase M16 inactive domain Aflv_1688 PF01522 Polysaccharide deacetylase Aflv_1689 PF03725 3' exoribonuclease family, domain 2 Aflv_1689 PF01138 3' exoribonuclease family, domain 1 Aflv_1689 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Aflv_1689 PF00013 KH domain Aflv_1689 PF00575 S1 RNA binding domain Aflv_1690 PF00312 Ribosomal protein S15 Aflv_1691 PF06574 FAD synthetase Aflv_1691 PF01687 Riboflavin kinase Aflv_1692 PF01509 TruB family pseudouridylate synthase (N terminal domain) Aflv_1692 PF16198 tRNA pseudouridylate synthase B C-terminal domain Aflv_1693 PF02033 Ribosome-binding factor A Aflv_1694 PF04456 Protein of unknown function (DUF503) Aflv_1695 PF00009 Elongation factor Tu GTP binding domain Aflv_1695 PF04760 Translation initiation factor IF-2, N-terminal region Aflv_1695 PF11987 Translation-initiation factor 2 Aflv_1696 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Aflv_1697 PF04296 Protein of unknown function (DUF448) Aflv_1698 PF00575 S1 RNA binding domain Aflv_1698 PF13184 NusA-like KH domain Aflv_1698 PF08529 NusA N-terminal domain Aflv_1699 PF17384 RimP C-terminal SH3 domain Aflv_1699 PF02576 RimP N-terminal domain Aflv_1700 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Aflv_1700 PF00929 Exonuclease Aflv_1700 PF14579 Helix-hairpin-helix motif Aflv_1700 PF02811 PHP domain Aflv_1700 PF14480 DNA polymerase III polC-type N-terminus I Aflv_1700 PF11490 DNA polymerase III polC-type N-terminus II Aflv_1700 PF07733 Bacterial DNA polymerase III alpha NTPase domain Aflv_1701 PF03129 Anticodon binding domain Aflv_1701 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Aflv_1701 PF04073 Aminoacyl-tRNA editing domain Aflv_1702 PF13180 PDZ domain Aflv_1702 PF02163 Peptidase family M50 Aflv_1703 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Aflv_1703 PF13288 DXP reductoisomerase C-terminal domain Aflv_1703 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Aflv_1705 PF01255 Putative undecaprenyl diphosphate synthase Aflv_1706 PF01765 Ribosome recycling factor Aflv_1707 PF00696 Amino acid kinase family Aflv_1708 PF00889 Elongation factor TS Aflv_1709 PF00318 Ribosomal protein S2 Aflv_1712 PF04545 Sigma-70, region 4 Aflv_1712 PF04539 Sigma-70 region 3 Aflv_1712 PF04542 Sigma-70 region 2 Aflv_1714 PF03975 CheD chemotactic sensory transduction Aflv_1715 PF04509 CheC-like family Aflv_1716 PF01584 CheW-like domain Aflv_1717 PF07194 P2 response regulator binding domain Aflv_1717 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1717 PF01584 CheW-like domain Aflv_1717 PF02895 Signal transducing histidine kinase, homodimeric domain Aflv_1717 PF01627 Hpt domain Aflv_1718 PF00072 Response regulator receiver domain Aflv_1718 PF01339 CheB methylesterase Aflv_1719 PF10609 NUBPL iron-transfer P-loop NTPase Aflv_1720 PF00448 SRP54-type protein, GTPase domain Aflv_1721 PF00771 FHIPEP family Aflv_1722 PF01312 FlhB HrpN YscU SpaS Family Aflv_1723 PF01311 Bacterial export proteins, family 1 Aflv_1724 PF01313 Bacterial export proteins, family 3 Aflv_1725 PF00813 FliP family Aflv_1726 PF04347 Flagellar biosynthesis protein, FliO Aflv_1727 PF00072 Response regulator receiver domain Aflv_1728 PF04509 CheC-like family Aflv_1728 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Aflv_1729 PF02154 Flagellar motor switch protein FliM Aflv_1729 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Aflv_1730 PF03748 Flagellar basal body-associated protein FliL Aflv_1731 PF06289 Flagellar and Swarming motility proteins Aflv_1732 PF00460 Flagella basal body rod protein Aflv_1732 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Aflv_1734 PF03963 Flagellar hook capping protein - N-terminal region Aflv_1735 PF02120 Flagellar hook-length control protein FliK Aflv_1737 PF02050 Flagellar FliJ protein Aflv_1738 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Aflv_1738 PF18269 T3SS EscN ATPase C-terminal domain Aflv_1738 PF02874 ATP synthase alpha/beta family, beta-barrel domain Aflv_1739 PF02108 Flagellar assembly protein FliH Aflv_1740 PF01706 FliG C-terminal domain Aflv_1740 PF14842 FliG N-terminal domain Aflv_1740 PF14841 FliG middle domain Aflv_1741 PF01514 Secretory protein of YscJ/FliF family Aflv_1741 PF08345 Flagellar M-ring protein C-terminal Aflv_1742 PF02049 Flagellar hook-basal body complex protein FliE Aflv_1743 PF00460 Flagella basal body rod protein Aflv_1743 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Aflv_1744 PF00460 Flagella basal body rod protein Aflv_1745 PF06018 CodY GAF-like domain Aflv_1745 PF08222 CodY helix-turn-helix domain Aflv_1746 PF10431 C-terminal, D2-small domain, of ClpB protein Aflv_1746 PF00004 ATPase family associated with various cellular activities (AAA) Aflv_1746 PF07724 AAA domain (Cdc48 subfamily) Aflv_1747 PF00227 Proteasome subunit Aflv_1748 PF02899 Phage integrase, N-terminal SAM-like domain Aflv_1748 PF00589 Phage integrase family Aflv_1749 PF01134 Glucose inhibited division protein A Aflv_1750 PF01396 Topoisomerase DNA binding C4 zinc finger Aflv_1750 PF01751 Toprim domain Aflv_1750 PF01131 DNA topoisomerase Aflv_1751 PF02481 DNA recombination-mediator protein A Aflv_1752 PF00549 CoA-ligase Aflv_1752 PF02629 CoA binding domain Aflv_1753 PF00549 CoA-ligase Aflv_1753 PF08442 ATP-grasp domain Aflv_1754 PF01312 FlhB HrpN YscU SpaS Family Aflv_1756 PF01351 Ribonuclease HII Aflv_1757 PF01926 50S ribosome-binding GTPase Aflv_1758 PF10502 Signal peptidase, peptidase S26 Aflv_1759 PF01245 Ribosomal protein L19 Aflv_1760 PF01746 tRNA (Guanine-1)-methyltransferase Aflv_1761 PF01782 RimM N-terminal domain Aflv_1761 PF05239 PRC-barrel domain Aflv_1762 PF11068 YlqD protein Aflv_1764 PF00886 Ribosomal protein S16 Aflv_1765 PF00448 SRP54-type protein, GTPase domain Aflv_1765 PF02881 SRP54-type protein, helical bundle domain Aflv_1765 PF02978 Signal peptide binding domain Aflv_1766 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Aflv_1767 PF02881 SRP54-type protein, helical bundle domain Aflv_1767 PF00448 SRP54-type protein, GTPase domain Aflv_1768 PF02463 RecF/RecN/SMC N terminal domain Aflv_1768 PF06470 SMC proteins Flexible Hinge Domain Aflv_1769 PF01385 Probable transposase Aflv_1769 PF12323 Helix-turn-helix domain Aflv_1769 PF07282 Putative transposase DNA-binding domain Aflv_1770 PF14622 Ribonuclease-III-like Aflv_1770 PF00035 Double-stranded RNA binding motif Aflv_1771 PF00550 Phosphopantetheine attachment site Aflv_1773 PF00698 Acyl transferase domain Aflv_1774 PF02504 Fatty acid synthesis protein Aflv_1775 PF01575 MaoC like domain Aflv_1775 PF08279 HTH domain Aflv_1776 PF17191 RecG wedge domain Aflv_1776 PF00271 Helicase conserved C-terminal domain Aflv_1776 PF00270 DEAD/DEAH box helicase Aflv_1777 PF03313 Serine dehydratase alpha chain Aflv_1778 PF01842 ACT domain Aflv_1778 PF03315 Serine dehydratase beta chain Aflv_1779 PF02734 DAK2 domain Aflv_1779 PF13684 Dihydroxyacetone kinase family Aflv_1780 PF03780 Asp23 family, cell envelope-related function Aflv_1781 PF00830 Ribosomal L28 family Aflv_1782 PF08183 Stage V sporulation protein family Aflv_1783 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain Aflv_1783 PF04263 Thiamin pyrophosphokinase, catalytic domain Aflv_1784 PF00834 Ribulose-phosphate 3 epimerase family Aflv_1785 PF16745 RsgA N-terminal domain Aflv_1785 PF03193 RsgA GTPase Aflv_1786 PF00069 Protein kinase domain Aflv_1786 PF03793 PASTA domain Aflv_1788 PF04055 Radical SAM superfamily Aflv_1789 PF01029 NusB family Aflv_1789 PF01189 16S rRNA methyltransferase RsmB/F Aflv_1790 PF00551 Formyl transferase Aflv_1790 PF02911 Formyl transferase, C-terminal domain Aflv_1791 PF01327 Polypeptide deformylase Aflv_1792 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Aflv_1792 PF18074 Primosomal protein N C-terminal domain Aflv_1792 PF17764 3′ DNA-binding domain (3′BD) Aflv_1792 PF00271 Helicase conserved C-terminal domain Aflv_1792 PF04851 Type III restriction enzyme, res subunit Aflv_1793 PF02441 Flavoprotein Aflv_1793 PF04127 DNA / pantothenate metabolism flavoprotein Aflv_1794 PF01192 RNA polymerase Rpb6 Aflv_1795 PF00625 Guanylate kinase Aflv_1796 PF03755 YicC-like family, N-terminal region Aflv_1796 PF08340 Domain of unknown function (DUF1732) Aflv_1797 PF00690 Cation transporter/ATPase, N-terminus Aflv_1797 PF00689 Cation transporting ATPase, C-terminus Aflv_1799 PF00156 Phosphoribosyl transferase domain Aflv_1800 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Aflv_1801 PF01180 Dihydroorotate dehydrogenase Aflv_1802 PF00175 Oxidoreductase NAD-binding domain Aflv_1802 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Aflv_1803 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Aflv_1803 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Aflv_1803 PF02142 MGS-like domain Aflv_1804 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Aflv_1804 PF00117 Glutamine amidotransferase class-I Aflv_1805 PF01979 Amidohydrolase family Aflv_1806 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Aflv_1806 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Aflv_1807 PF00860 Permease family Aflv_1808 PF00156 Phosphoribosyl transferase domain Aflv_1809 PF01479 S4 domain Aflv_1809 PF00849 RNA pseudouridylate synthase Aflv_1810 PF01252 Signal peptidase (SPase) II Aflv_1811 PF12323 Helix-turn-helix domain Aflv_1811 PF01385 Probable transposase Aflv_1811 PF07282 Putative transposase DNA-binding domain Aflv_1812 PF06827 Zinc finger found in FPG and IleRS Aflv_1812 PF00133 tRNA synthetases class I (I, L, M and V) Aflv_1812 PF08264 Anticodon-binding domain of tRNA Aflv_1813 PF05103 DivIVA protein Aflv_1814 PF01479 S4 domain Aflv_1814 PF17774 Putative RNA-binding domain in YlmH Aflv_1815 PF02325 YGGT family Aflv_1816 PF04472 Cell division protein SepF Aflv_1817 PF01168 Alanine racemase, N-terminal domain Aflv_1819 PF05239 PRC-barrel domain Aflv_1820 PF04539 Sigma-70 region 3 Aflv_1820 PF04545 Sigma-70, region 4 Aflv_1820 PF04542 Sigma-70 region 2 Aflv_1821 PF04542 Sigma-70 region 2 Aflv_1821 PF04545 Sigma-70, region 4 Aflv_1822 PF03419 Sporulation factor SpoIIGA Aflv_1823 PF00091 Tubulin/FtsZ family, GTPase domain Aflv_1823 PF12327 FtsZ family, C-terminal domain Aflv_1824 PF02491 SHS2 domain inserted in FTSA Aflv_1825 PF06947 Protein of unknown function (DUF1290) Aflv_1826 PF05949 Bacterial protein of unknown function (DUF881) Aflv_1827 PF05949 Bacterial protein of unknown function (DUF881) Aflv_1828 PF08478 POTRA domain, FtsQ-type Aflv_1829 PF01565 FAD binding domain Aflv_1829 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Aflv_1830 PF03033 Glycosyltransferase family 28 N-terminal domain Aflv_1830 PF04101 Glycosyltransferase family 28 C-terminal domain Aflv_1831 PF01098 Cell cycle protein Aflv_1832 PF08245 Mur ligase middle domain Aflv_1832 PF02875 Mur ligase family, glutamate ligase domain Aflv_1833 PF00953 Glycosyl transferase family 4 Aflv_1833 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Aflv_1834 PF01225 Mur ligase family, catalytic domain Aflv_1834 PF02875 Mur ligase family, glutamate ligase domain Aflv_1834 PF08245 Mur ligase middle domain Aflv_1835 PF00905 Penicillin binding protein transpeptidase domain Aflv_1835 PF03717 Penicillin-binding Protein dimerisation domain Aflv_1835 PF03793 PASTA domain Aflv_1837 PF04977 Septum formation initiator Aflv_1838 PF01795 MraW methylase family Aflv_1839 PF10079 Bacillithiol biosynthesis BshC Aflv_1841 PF08546 Ketopantoate reductase PanE/ApbA C terminal Aflv_1841 PF02558 Ketopantoate reductase PanE/ApbA Aflv_1843 PF00378 Enoyl-CoA hydratase/isomerase Aflv_1844 PF01783 Ribosomal L32p protein family Aflv_1845 PF02620 Large ribosomal RNA subunit accumulation protein YceD Aflv_1846 PF05636 HIGH Nucleotidyl Transferase Aflv_1847 PF13180 PDZ domain Aflv_1847 PF05362 Lon protease (S16) C-terminal proteolytic domain Aflv_1848 PF01734 Patatin-like phospholipase Aflv_1849 PF07670 Nucleoside recognition Aflv_1850 PF01467 Cytidylyltransferase-like Aflv_1854 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) Aflv_1855 PF06133 Control of competence regulator ComK, YlbF/YmcA Aflv_1857 PF14003 YlbE-like protein Aflv_1858 PF14071 Putative coat protein Aflv_1859 PF14504 CAP-associated N-terminal Aflv_1859 PF00188 Cysteine-rich secretory protein family Aflv_1860 PF00571 CBS domain Aflv_1861 PF08868 YugN-like family Aflv_1864 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) Aflv_1865 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Aflv_1866 PF00510 Cytochrome c oxidase subunit III Aflv_1867 PF00115 Cytochrome C and Quinol oxidase polypeptide I Aflv_1868 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Aflv_1868 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Aflv_1868 PF00034 Cytochrome c Aflv_1869 PF01040 UbiA prenyltransferase family Aflv_1870 PF02628 Cytochrome oxidase assembly protein Aflv_1871 PF02436 Conserved carboxylase domain Aflv_1871 PF00364 Biotin-requiring enzyme Aflv_1871 PF02785 Biotin carboxylase C-terminal domain Aflv_1871 PF00289 Biotin carboxylase, N-terminal domain Aflv_1871 PF00682 HMGL-like Aflv_1871 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Aflv_1872 PF01098 Cell cycle protein Aflv_1873 PF07408 Protein of unknown function (DUF1507) Aflv_1875 PF13638 PIN domain Aflv_1875 PF02562 PhoH-like protein Aflv_1876 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Aflv_1878 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) Aflv_1880 PF14036 YlaH-like protein Aflv_1882 PF00459 Inositol monophosphatase family Aflv_1884 PF05256 Uncharacterised protein family (UPF0223) Aflv_1885 PF03060 Nitronate monooxygenase Aflv_1886 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Aflv_1886 PF01276 Orn/Lys/Arg decarboxylase, major domain Aflv_1891 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Aflv_1891 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_1892 PF00364 Biotin-requiring enzyme Aflv_1892 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Aflv_1892 PF02817 e3 binding domain Aflv_1893 PF02780 Transketolase, C-terminal domain Aflv_1893 PF02779 Transketolase, pyrimidine binding domain Aflv_1894 PF00676 Dehydrogenase E1 component Aflv_1895 PF01327 Polypeptide deformylase Aflv_1899 PF17770 Ribonuclease J C-terminal domain Aflv_1899 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Aflv_1899 PF00753 Metallo-beta-lactamase superfamily Aflv_1901 PF02080 TrkA-C domain Aflv_1901 PF02254 TrkA-N domain Aflv_1902 PF00578 AhpC/TSA family Aflv_1903 PF07687 Peptidase dimerisation domain Aflv_1903 PF01546 Peptidase family M20/M25/M40 Aflv_1904 PF14602 Hexapeptide repeat of succinyl-transferase Aflv_1904 PF00132 Bacterial transferase hexapeptide (six repeats) Aflv_1904 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal Aflv_1906 PF08796 Protein of unknown function (DUF1797) Aflv_1908 PF00563 EAL domain Aflv_1908 PF10388 EAL-domain associated signalling protein domain Aflv_1910 PF10518 TAT (twin-arginine translocation) pathway signal sequence Aflv_1910 PF00149 Calcineurin-like phosphoesterase Aflv_1911 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Aflv_1912 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Aflv_1913 PF17941 Polyphosphate kinase C-terminal domain 1 Aflv_1913 PF13090 Polyphosphate kinase C-terminal domain 2 Aflv_1913 PF02503 Polyphosphate kinase middle domain Aflv_1913 PF13089 Polyphosphate kinase N-terminal domain Aflv_1914 PF02541 Ppx/GppA phosphatase family Aflv_1915 PF14177 YkyB-like protein Aflv_1916 PF00990 Diguanylate cyclase, GGDEF domain Aflv_1916 PF03707 Bacterial signalling protein N terminal repeat Aflv_1916 PF00563 EAL domain Aflv_1917 PF05504 Spore germination B3/ GerAC like, C-terminal Aflv_1918 PF03845 Spore germination protein Aflv_1920 PF03323 Bacillus/Clostridium GerA spore germination protein Aflv_1921 PF00989 PAS fold Aflv_1921 PF16736 Single Cache-like Aflv_1921 PF00512 His Kinase A (phospho-acceptor) domain Aflv_1921 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1922 PF00072 Response regulator receiver domain Aflv_1922 PF00486 Transcriptional regulatory protein, C terminal Aflv_1924 PF00535 Glycosyl transferase family 2 Aflv_1926 PF00072 Response regulator receiver domain Aflv_1926 PF00990 Diguanylate cyclase, GGDEF domain Aflv_1927 PF01584 CheW-like domain Aflv_1927 PF00072 Response regulator receiver domain Aflv_1930 PF00512 His Kinase A (phospho-acceptor) domain Aflv_1930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1932 PF08858 IDEAL domain Aflv_1932 PF08864 UPF0302 domain Aflv_1933 PF00155 Aminotransferase class I and II Aflv_1934 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Aflv_1934 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Aflv_1936 PF00990 Diguanylate cyclase, GGDEF domain Aflv_1936 PF00072 Response regulator receiver domain Aflv_1937 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1938 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_1938 PF00672 HAMP domain Aflv_1938 PF02743 Cache domain Aflv_1939 PF02896 PEP-utilising enzyme, TIM barrel domain Aflv_1939 PF05524 PEP-utilising enzyme, N-terminal Aflv_1939 PF00391 PEP-utilising enzyme, mobile domain Aflv_1940 PF00381 PTS HPr component phosphorylation site Aflv_1941 PF00367 phosphotransferase system, EIIB Aflv_1941 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Aflv_1941 PF02378 Phosphotransferase system, EIIC Aflv_1942 PF03123 CAT RNA binding domain Aflv_1942 PF00874 PRD domain Aflv_1944 PF00877 NlpC/P60 family Aflv_1944 PF01476 LysM domain Aflv_1945 PF00561 alpha/beta hydrolase fold Aflv_1946 PF03334 Na+/H+ antiporter subunit Aflv_1947 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Aflv_1948 PF01899 Na+/H+ ion antiporter subunit Aflv_1949 PF00361 Proton-conducting membrane transporter Aflv_1950 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Aflv_1951 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Aflv_1952 PF13244 Domain of unknown function (DUF4040) Aflv_1952 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Aflv_1952 PF00361 Proton-conducting membrane transporter Aflv_1953 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_1958 PF01638 HxlR-like helix-turn-helix Aflv_1959 PF00881 Nitroreductase family Aflv_1960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1960 PF00989 PAS fold Aflv_1960 PF00512 His Kinase A (phospho-acceptor) domain Aflv_1961 PF14166 YueH-like protein Aflv_1965 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) Aflv_1966 PF13460 NAD(P)H-binding Aflv_1969 PF04055 Radical SAM superfamily Aflv_1970 PF01242 6-pyruvoyl tetrahydropterin synthase Aflv_1971 PF06508 Queuosine biosynthesis protein QueC Aflv_1972 PF01895 PhoU domain Aflv_1977 PF13115 YtkA-like Aflv_1979 PF00072 Response regulator receiver domain Aflv_1979 PF00486 Transcriptional regulatory protein, C terminal Aflv_1980 PF00672 HAMP domain Aflv_1980 PF00989 PAS fold Aflv_1980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1980 PF00512 His Kinase A (phospho-acceptor) domain Aflv_1980 PF18698 Histidine kinase sensor domain Aflv_1981 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_1981 PF08447 PAS fold Aflv_1981 PF13426 PAS domain Aflv_1982 PF00145 C-5 cytosine-specific DNA methylase Aflv_1983 PF09208 Restriction endonuclease MspI Aflv_1984 PF10431 C-terminal, D2-small domain, of ClpB protein Aflv_1984 PF17871 AAA lid domain Aflv_1984 PF00004 ATPase family associated with various cellular activities (AAA) Aflv_1984 PF07724 AAA domain (Cdc48 subfamily) Aflv_1985 PF00440 Bacterial regulatory proteins, tetR family Aflv_1987 PF00005 ABC transporter Aflv_1989 PF13520 Amino acid permease Aflv_1991 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Aflv_1992 PF00512 His Kinase A (phospho-acceptor) domain Aflv_1992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_1992 PF02743 Cache domain Aflv_1993 PF02535 ZIP Zinc transporter Aflv_1994 PF03079 ARD/ARD' family Aflv_1995 PF00596 Class II Aldolase and Adducin N-terminal domain Aflv_1997 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Aflv_1997 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Aflv_1998 PF00155 Aminotransferase class I and II Aflv_1999 PF00795 Carbon-nitrogen hydrolase Aflv_2000 PF01636 Phosphotransferase enzyme family Aflv_2001 PF01008 Initiation factor 2 subunit family Aflv_2002 PF13407 Periplasmic binding protein domain Aflv_2003 PF00005 ABC transporter Aflv_2004 PF02653 Branched-chain amino acid transport system / permease component Aflv_2005 PF12729 Four helix bundle sensory module for signal transduction Aflv_2005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_2005 PF00672 HAMP domain Aflv_2006 PF00989 PAS fold Aflv_2006 PF13188 PAS domain Aflv_2006 PF00512 His Kinase A (phospho-acceptor) domain Aflv_2006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_2006 PF13426 PAS domain Aflv_2007 PF02589 LUD domain Aflv_2008 PF02589 LUD domain Aflv_2008 PF13183 4Fe-4S dicluster domain Aflv_2008 PF11870 Domain of unknown function (DUF3390) Aflv_2009 PF02754 Cysteine-rich domain Aflv_2010 PF00392 Bacterial regulatory proteins, gntR family Aflv_2010 PF07729 FCD domain Aflv_2011 PF02652 L-lactate permease Aflv_2013 PF07282 Putative transposase DNA-binding domain Aflv_2013 PF12323 Helix-turn-helix domain Aflv_2013 PF01385 Probable transposase Aflv_2021 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2022 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2024 PF13419 Haloacid dehalogenase-like hydrolase Aflv_2025 PF03632 Glycosyl hydrolase family 65 central catalytic domain Aflv_2025 PF03633 Glycosyl hydrolase family 65, C-terminal domain Aflv_2025 PF03636 Glycosyl hydrolase family 65, N-terminal domain Aflv_2026 PF00356 Bacterial regulatory proteins, lacI family Aflv_2027 PF02743 Cache domain Aflv_2027 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_2027 PF00672 HAMP domain Aflv_2028 PF17853 GGDEF-like domain Aflv_2028 PF05651 Putative sugar diacid recognition Aflv_2028 PF13556 PucR C-terminal helix-turn-helix domain Aflv_2029 PF02913 FAD linked oxidases, C-terminal domain Aflv_2029 PF01565 FAD binding domain Aflv_2030 PF13183 4Fe-4S dicluster domain Aflv_2030 PF02754 Cysteine-rich domain Aflv_2032 PF00210 Ferritin-like domain Aflv_2033 PF03741 Integral membrane protein TerC family Aflv_2034 PF13520 Amino acid permease Aflv_2035 PF00512 His Kinase A (phospho-acceptor) domain Aflv_2035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_2036 PF07690 Major Facilitator Superfamily Aflv_2037 PF00535 Glycosyl transferase family 2 Aflv_2039 PF00398 Ribosomal RNA adenine dimethylase Aflv_2040 PF02525 Flavodoxin-like fold Aflv_2043 PF01168 Alanine racemase, N-terminal domain Aflv_2045 PF03949 Malic enzyme, NAD binding domain Aflv_2045 PF00390 Malic enzyme, N-terminal domain Aflv_2046 PF00206 Lyase Aflv_2046 PF10415 Fumarase C C-terminus Aflv_2047 PF17763 Glutaminase/Asparaginase C-terminal domain Aflv_2047 PF00710 Asparaginase, N-terminal Aflv_2049 PF00069 Protein kinase domain Aflv_2053 PF00892 EamA-like transporter family Aflv_2057 PF18766 SWI2/SNF2 ATPase Aflv_2057 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Aflv_2057 PF11867 Domain of unknown function (DUF3387) Aflv_2058 PF01420 Type I restriction modification DNA specificity domain Aflv_2059 PF02384 N-6 DNA Methylase Aflv_2065 PF01966 HD domain Aflv_2066 PF01053 Cys/Met metabolism PLP-dependent enzyme Aflv_2067 PF01053 Cys/Met metabolism PLP-dependent enzyme Aflv_2068 PF07883 Cupin domain Aflv_2069 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Aflv_2070 PF01741 Large-conductance mechanosensitive channel, MscL Aflv_2071 PF04608 Phosphatidylglycerophosphatase A Aflv_2072 PF00756 Putative esterase Aflv_2074 PF13673 Acetyltransferase (GNAT) domain Aflv_2075 PF04239 Protein of unknown function (DUF421) Aflv_2077 PF00580 UvrD/REP helicase N-terminal domain Aflv_2077 PF13361 UvrD-like helicase C-terminal domain Aflv_2078 PF14069 Stage VI sporulation protein F Aflv_2080 PF00085 Thioredoxin Aflv_2082 PF04239 Protein of unknown function (DUF421) Aflv_2084 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Aflv_2085 PF07451 Stage V sporulation protein AD (SpoVAD) Aflv_2086 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Aflv_2093 PF07098 Protein of unknown function (DUF1360) Aflv_2095 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Aflv_2095 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Aflv_2095 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Aflv_2096 PF01370 NAD dependent epimerase/dehydratase family Aflv_2097 PF13439 Glycosyltransferase Family 4 Aflv_2097 PF00534 Glycosyl transferases group 1 Aflv_2099 PF05114 Protein of unknown function (DUF692) Aflv_2103 PF13276 HTH-like domain Aflv_2103 PF00665 Integrase core domain Aflv_2103 PF13333 Integrase core domain Aflv_2104 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Aflv_2104 PF13542 Helix-turn-helix domain of transposase family ISL3 Aflv_2104 PF01610 Transposase Aflv_2106 PF07690 Major Facilitator Superfamily Aflv_2108 PF01769 Divalent cation transporter Aflv_2108 PF03448 MgtE intracellular N domain Aflv_2108 PF00571 CBS domain Aflv_2109 PF01098 Cell cycle protein Aflv_2110 PF12671 Putative amidase domain Aflv_2112 PF00149 Calcineurin-like phosphoesterase Aflv_2113 PF00849 RNA pseudouridylate synthase Aflv_2114 PF01513 ATP-NAD kinase Aflv_2115 PF04607 Region found in RelA / SpoT proteins Aflv_2117 PF01928 CYTH domain Aflv_2118 PF01464 Transglycosylase SLT domain Aflv_2119 PF01152 Bacterial-like globin Aflv_2122 PF01432 Peptidase family M3 Aflv_2122 PF08439 Oligopeptidase F Aflv_2124 PF07282 Putative transposase DNA-binding domain Aflv_2124 PF12323 Helix-turn-helix domain Aflv_2124 PF01385 Probable transposase Aflv_2125 PF05389 Negative regulator of genetic competence (MecA) Aflv_2126 PF13396 Phospholipase_D-nuclease N-terminal Aflv_2126 PF13091 PLD-like domain Aflv_2127 PF03960 ArsC family Aflv_2129 PF00005 ABC transporter Aflv_2129 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Aflv_2130 PF00005 ABC transporter Aflv_2130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Aflv_2131 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2131 PF12911 N-terminal TM domain of oligopeptide transport permease C Aflv_2132 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2133 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Aflv_2135 PF00579 tRNA synthetases class I (W and Y) Aflv_2136 PF12227 Protein of unknown function (DUF3603) Aflv_2138 PF10026 Predicted Zn-dependent protease (DUF2268) Aflv_2139 PF02801 Beta-ketoacyl synthase, C-terminal domain Aflv_2139 PF00109 Beta-ketoacyl synthase, N-terminal domain Aflv_2140 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Aflv_2140 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Aflv_2141 PF02608 ABC transporter substrate-binding protein PnrA-like Aflv_2144 PF00004 ATPase family associated with various cellular activities (AAA) Aflv_2144 PF17871 AAA lid domain Aflv_2144 PF07724 AAA domain (Cdc48 subfamily) Aflv_2144 PF02861 Clp amino terminal domain, pathogenicity island component Aflv_2144 PF10431 C-terminal, D2-small domain, of ClpB protein Aflv_2145 PF14168 YjzC-like protein Aflv_2146 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Aflv_2146 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Aflv_2147 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Aflv_2147 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Aflv_2148 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Aflv_2148 PF00117 Glutamine amidotransferase class-I Aflv_2149 PF00202 Aminotransferase class-III Aflv_2150 PF00696 Amino acid kinase family Aflv_2151 PF01960 ArgJ family Aflv_2152 PF02774 Semialdehyde dehydrogenase, dimerisation domain Aflv_2152 PF01118 Semialdehyde dehydrogenase, NAD binding domain Aflv_2153 PF00325 Bacterial regulatory proteins, crp family Aflv_2153 PF00027 Cyclic nucleotide-binding domain Aflv_2154 PF14256 YwiC-like protein Aflv_2155 PF00326 Prolyl oligopeptidase family Aflv_2159 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Aflv_2159 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Aflv_2160 PF02645 Uncharacterised protein, DegV family COG1307 Aflv_2162 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_2162 PF02743 Cache domain Aflv_2162 PF00672 HAMP domain Aflv_2164 PF04461 Protein of unknown function (DUF520) Aflv_2165 PF02219 Methylenetetrahydrofolate reductase Aflv_2165 PF02574 Homocysteine S-methyltransferase Aflv_2166 PF02607 B12 binding domain Aflv_2166 PF02310 B12 binding domain Aflv_2166 PF00809 Pterin binding enzyme Aflv_2166 PF02965 Vitamin B12 dependent methionine synthase, activation domain Aflv_2166 PF02574 Homocysteine S-methyltransferase Aflv_2167 PF12557 Cob(I)alamin adenosyltransferase N terminal Aflv_2167 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Aflv_2168 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Aflv_2169 PF02277 Phosphoribosyltransferase Aflv_2170 PF07685 CobB/CobQ-like glutamine amidotransferase domain Aflv_2170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Aflv_2171 PF07685 CobB/CobQ-like glutamine amidotransferase domain Aflv_2171 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Aflv_2172 PF01890 Cobalamin synthesis G C-terminus Aflv_2172 PF11761 Cobalamin biosynthesis central region Aflv_2172 PF11760 Cobalamin synthesis G N-terminal Aflv_2173 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Aflv_2174 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Aflv_2175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Aflv_2176 PF01888 CbiD Aflv_2177 PF02570 Precorrin-8X methylmutase Aflv_2178 PF02571 Precorrin-6x reductase CbiJ/CobK Aflv_2179 PF01903 CbiX Aflv_2180 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Aflv_2180 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Aflv_2181 PF00005 ABC transporter Aflv_2183 PF02553 Cobalt transport protein component CbiN Aflv_2184 PF01891 Cobalt uptake substrate-specific transmembrane region Aflv_2186 PF00356 Bacterial regulatory proteins, lacI family Aflv_2187 PF13802 Galactose mutarotase-like Aflv_2187 PF17137 Domain of unknown function (DUF5110) Aflv_2187 PF16338 Domain of unknown function (DUF4968) Aflv_2187 PF01055 Glycosyl hydrolases family 31 Aflv_2188 PF03423 Carbohydrate binding domain (family 25) Aflv_2188 PF01373 Glycosyl hydrolase family 14 Aflv_2188 PF00128 Alpha amylase, catalytic domain Aflv_2189 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2190 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2191 PF13416 Bacterial extracellular solute-binding protein Aflv_2192 PF00128 Alpha amylase, catalytic domain Aflv_2192 PF16657 Maltogenic Amylase, C-terminal domain Aflv_2192 PF02903 Alpha amylase, N-terminal ig-like domain Aflv_2193 PF12833 Helix-turn-helix domain Aflv_2193 PF02311 AraC-like ligand binding domain Aflv_2194 PF01554 MatE Aflv_2195 PF01593 Flavin containing amine oxidoreductase Aflv_2196 PF00535 Glycosyl transferase family 2 Aflv_2201 PF01593 Flavin containing amine oxidoreductase Aflv_2202 PF13537 Glutamine amidotransferase domain Aflv_2202 PF00733 Asparagine synthase Aflv_2204 PF03707 Bacterial signalling protein N terminal repeat Aflv_2204 PF00563 EAL domain Aflv_2204 PF00990 Diguanylate cyclase, GGDEF domain Aflv_2205 PF07457 Protein of unknown function (DUF1516) Aflv_2206 PF00202 Aminotransferase class-III Aflv_2207 PF01557 Fumarylacetoacetate (FAA) hydrolase family Aflv_2208 PF09388 Spo0E like sporulation regulatory protein Aflv_2209 PF04235 Protein of unknown function (DUF418) Aflv_2212 PF01738 Dienelactone hydrolase family Aflv_2213 PF12832 MFS_1 like family Aflv_2215 PF13358 DDE superfamily endonuclease Aflv_2219 PF00501 AMP-binding enzyme Aflv_2219 PF13193 AMP-binding enzyme C-terminal domain Aflv_2221 PF10676 Spore germination protein gerPA/gerPF Aflv_2222 PF10803 Spore germination GerPB Aflv_2223 PF10737 Spore germination protein GerPC Aflv_2226 PF10676 Spore germination protein gerPA/gerPF Aflv_2228 PF13476 AAA domain Aflv_2229 PF00149 Calcineurin-like phosphoesterase Aflv_2229 PF12320 Type 5 capsule protein repressor C-terminal domain Aflv_2230 PF13361 UvrD-like helicase C-terminal domain Aflv_2230 PF00580 UvrD/REP helicase N-terminal domain Aflv_2230 PF12705 PD-(D/E)XK nuclease superfamily Aflv_2231 PF13361 UvrD-like helicase C-terminal domain Aflv_2231 PF12705 PD-(D/E)XK nuclease superfamily Aflv_2232 PF09335 SNARE associated Golgi protein Aflv_2236 PF02463 RecF/RecN/SMC N terminal domain Aflv_2237 PF13361 UvrD-like helicase C-terminal domain Aflv_2237 PF00580 UvrD/REP helicase N-terminal domain Aflv_2238 PF12950 TaqI-like C-terminal specificity domain Aflv_2238 PF02384 N-6 DNA Methylase Aflv_2239 PF01381 Helix-turn-helix Aflv_2241 PF00463 Isocitrate lyase family Aflv_2242 PF16491 CAAX prenyl protease N-terminal, five membrane helices Aflv_2242 PF01435 Peptidase family M48 Aflv_2243 PF02630 SCO1/SenC Aflv_2244 PF00672 HAMP domain Aflv_2244 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_2246 PF01966 HD domain Aflv_2246 PF00072 Response regulator receiver domain Aflv_2247 PF00196 Bacterial regulatory proteins, luxR family Aflv_2247 PF17874 MalT-like TPR region Aflv_2248 PF08668 HDOD domain Aflv_2248 PF00563 EAL domain Aflv_2249 PF03707 Bacterial signalling protein N terminal repeat Aflv_2249 PF00990 Diguanylate cyclase, GGDEF domain Aflv_2249 PF00563 EAL domain Aflv_2250 PF00005 ABC transporter Aflv_2251 PF02653 Branched-chain amino acid transport system / permease component Aflv_2253 PF00501 AMP-binding enzyme Aflv_2253 PF13193 AMP-binding enzyme C-terminal domain Aflv_2255 PF05593 RHS Repeat Aflv_2264 PF00474 Sodium:solute symporter family Aflv_2267 PF12323 Helix-turn-helix domain Aflv_2267 PF01385 Probable transposase Aflv_2267 PF07282 Putative transposase DNA-binding domain Aflv_2268 PF12323 Helix-turn-helix domain Aflv_2268 PF07282 Putative transposase DNA-binding domain Aflv_2268 PF01385 Probable transposase Aflv_2269 PF12706 Beta-lactamase superfamily domain Aflv_2270 PF14149 YhfH-like protein Aflv_2272 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2273 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2273 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2274 PF01547 Bacterial extracellular solute-binding protein Aflv_2275 PF00356 Bacterial regulatory proteins, lacI family Aflv_2277 PF17932 Tetracyclin repressor-like, C-terminal domain Aflv_2277 PF00440 Bacterial regulatory proteins, tetR family Aflv_2280 PF01208 Uroporphyrinogen decarboxylase (URO-D) Aflv_2281 PF03992 Antibiotic biosynthesis monooxygenase Aflv_2282 PF00581 Rhodanese-like domain Aflv_2283 PF07687 Peptidase dimerisation domain Aflv_2283 PF01546 Peptidase family M20/M25/M40 Aflv_2285 PF00005 ABC transporter Aflv_2286 PF01230 HIT domain Aflv_2287 PF05698 Bacterial trigger factor protein (TF) C-terminus Aflv_2290 PF01047 MarR family Aflv_2292 PF17099 Tryptophan transporter TrpP Aflv_2293 PF00266 Aminotransferase class-V Aflv_2294 PF14147 Sporulation protein YhaL Aflv_2295 PF14120 YhzD-like protein Aflv_2296 PF04055 Radical SAM superfamily Aflv_2298 PF06133 Control of competence regulator ComK, YlbF/YmcA Aflv_2299 PF04286 Protein of unknown function (DUF445) Aflv_2302 PF13556 PucR C-terminal helix-turn-helix domain Aflv_2303 PF00005 ABC transporter Aflv_2303 PF03459 TOBE domain Aflv_2303 PF17912 MalK OB fold domain Aflv_2306 PF00269 Small, acid-soluble spore proteins, alpha/beta type Aflv_2307 PF00005 ABC transporter Aflv_2308 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2309 PF00497 Bacterial extracellular solute-binding proteins, family 3 Aflv_2310 PF01595 Cyclin M transmembrane N-terminal domain Aflv_2310 PF00571 CBS domain Aflv_2310 PF03471 Transporter associated domain Aflv_2311 PF08543 Phosphomethylpyrimidine kinase Aflv_2312 PF00899 ThiF family Aflv_2313 PF05690 Thiazole biosynthesis protein ThiG Aflv_2314 PF05690 Thiazole biosynthesis protein ThiG Aflv_2314 PF02597 ThiS family Aflv_2315 PF01266 FAD dependent oxidoreductase Aflv_2316 PF02581 Thiamine monophosphate synthase Aflv_2317 PF02361 Cobalt transport protein Aflv_2318 PF00005 ABC transporter Aflv_2319 PF09819 ABC-type cobalt transport system, permease component Aflv_2320 PF03070 TENA/THI-4/PQQC family Aflv_2321 PF17785 PUA-like domain Aflv_2321 PF10672 S-adenosylmethionine-dependent methyltransferase Aflv_2324 PF00128 Alpha amylase, catalytic domain Aflv_2324 PF16657 Maltogenic Amylase, C-terminal domain Aflv_2325 PF07690 Major Facilitator Superfamily Aflv_2326 PF01047 MarR family Aflv_2327 PF04293 SpoVR like protein Aflv_2328 PF01145 SPFH domain / Band 7 family Aflv_2328 PF12221 Bacterial membrane protein N terminal Aflv_2329 PF01145 SPFH domain / Band 7 family Aflv_2330 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Aflv_2330 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Aflv_2331 PF14148 YhdB-like protein Aflv_2332 PF00106 short chain dehydrogenase Aflv_2333 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Aflv_2333 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Aflv_2333 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Aflv_2333 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Aflv_2334 PF00571 CBS domain Aflv_2335 PF02600 Disulfide bond formation protein DsbB Aflv_2336 PF00085 Thioredoxin Aflv_2338 PF00849 RNA pseudouridylate synthase Aflv_2338 PF01479 S4 domain Aflv_2340 PF00571 CBS domain Aflv_2340 PF01595 Cyclin M transmembrane N-terminal domain Aflv_2340 PF03471 Transporter associated domain Aflv_2341 PF04298 Putative neutral zinc metallopeptidase Aflv_2342 PF00581 Rhodanese-like domain Aflv_2342 PF00753 Metallo-beta-lactamase superfamily Aflv_2344 PF01925 Sulfite exporter TauE/SafE Aflv_2345 PF01206 Sulfurtransferase TusA Aflv_2346 PF13686 DsrE/DsrF/DrsH-like family Aflv_2347 PF01206 Sulfurtransferase TusA Aflv_2347 PF00581 Rhodanese-like domain Aflv_2348 PF00581 Rhodanese-like domain Aflv_2349 PF04285 Protein of unknown function (DUF444) Aflv_2350 PF06798 PrkA serine protein kinase C-terminal domain Aflv_2350 PF08298 PrkA AAA domain Aflv_2352 PF00588 SpoU rRNA Methylase family Aflv_2353 PF12671 Putative amidase domain Aflv_2354 PF08331 Domain of unknown function (DUF1730) Aflv_2356 PF00356 Bacterial regulatory proteins, lacI family Aflv_2357 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2358 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2359 PF13416 Bacterial extracellular solute-binding protein Aflv_2363 PF02308 MgtC family Aflv_2364 PF00072 Response regulator receiver domain Aflv_2365 PF01022 Bacterial regulatory protein, arsR family Aflv_2366 PF00571 CBS domain Aflv_2366 PF03471 Transporter associated domain Aflv_2366 PF01595 Cyclin M transmembrane N-terminal domain Aflv_2367 PF13411 MerR HTH family regulatory protein Aflv_2369 PF01610 Transposase Aflv_2369 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Aflv_2369 PF13542 Helix-turn-helix domain of transposase family ISL3 Aflv_2370 PF00005 ABC transporter Aflv_2376 PF13358 DDE superfamily endonuclease Aflv_2377 PF01609 Transposase DDE domain Aflv_2378 PF13276 HTH-like domain Aflv_2378 PF13333 Integrase core domain Aflv_2378 PF00665 Integrase core domain Aflv_2382 PF08141 Small acid-soluble spore protein H family Aflv_2383 PF07885 Ion channel Aflv_2383 PF02254 TrkA-N domain Aflv_2384 PF08868 YugN-like family Aflv_2385 PF00342 Phosphoglucose isomerase Aflv_2386 PF00465 Iron-containing alcohol dehydrogenase Aflv_2387 PF04070 Domain of unknown function (DUF378) Aflv_2388 PF00575 S1 RNA binding domain Aflv_2390 PF00155 Aminotransferase class I and II Aflv_2391 PF01037 Lrp/AsnC ligand binding domain Aflv_2392 PF00080 Copper/zinc superoxide dismutase (SODC) Aflv_2395 PF03600 Citrate transporter Aflv_2398 PF02632 BioY family Aflv_2399 PF06725 3D domain Aflv_2400 PF14068 Putative membrane protein Aflv_2402 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_2403 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_2404 PF06305 Lipopolysaccharide assembly protein A domain Aflv_2405 PF01521 Iron-sulphur cluster biosynthesis Aflv_2406 PF01678 Diaminopimelate epimerase Aflv_2408 PF07293 Protein of unknown function (DUF1450) Aflv_2409 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_2410 PF07315 Protein of unknown function (DUF1462) Aflv_2411 PF01106 NifU-like domain Aflv_2412 PF00288 GHMP kinases N terminal domain Aflv_2412 PF08544 GHMP kinases C terminal Aflv_2413 PF00291 Pyridoxal-phosphate dependent enzyme Aflv_2414 PF00742 Homoserine dehydrogenase Aflv_2414 PF03447 Homoserine dehydrogenase, NAD binding domain Aflv_2414 PF01842 ACT domain Aflv_2415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Aflv_2415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aflv_2417 PF04608 Phosphatidylglycerophosphatase A Aflv_2418 PF13344 Haloacid dehalogenase-like hydrolase Aflv_2420 PF01934 Protein of unknown function DUF86 Aflv_2423 PF06265 Protein of unknown function (DUF1027) Aflv_2424 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Aflv_2425 PF04055 Radical SAM superfamily Aflv_2425 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Aflv_2426 PF01551 Peptidase family M23 Aflv_2428 PF00209 Sodium:neurotransmitter symporter family Aflv_2429 PF09560 Sporulation protein YunB (Spo_YunB) Aflv_2430 PF08827 Domain of unknown function (DUF1805) Aflv_2431 PF02872 5'-nucleotidase, C-terminal domain Aflv_2432 PF01925 Sulfite exporter TauE/SafE Aflv_2433 PF01904 Protein of unknown function DUF72 Aflv_2435 PF13276 HTH-like domain Aflv_2435 PF13333 Integrase core domain Aflv_2435 PF00665 Integrase core domain Aflv_2439 PF00589 Phage integrase family Aflv_2439 PF02899 Phage integrase, N-terminal SAM-like domain Aflv_2440 PF14028 Lantibiotic biosynthesis dehydratase C-term Aflv_2440 PF04738 Lantibiotic dehydratase, N terminus Aflv_2445 PF07690 Major Facilitator Superfamily Aflv_2446 PF00579 tRNA synthetases class I (W and Y) Aflv_2447 PF00872 Transposase, Mutator family Aflv_2449 PF13276 HTH-like domain Aflv_2449 PF00665 Integrase core domain Aflv_2449 PF13333 Integrase core domain Aflv_2450 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Aflv_2452 PF00665 Integrase core domain Aflv_2452 PF09299 Mu transposase, C-terminal Aflv_2459 PF02899 Phage integrase, N-terminal SAM-like domain Aflv_2459 PF00589 Phage integrase family Aflv_2460 PF01458 Uncharacterized protein family (UPF0051) Aflv_2461 PF01592 NifU-like N terminal domain Aflv_2462 PF00266 Aminotransferase class-V Aflv_2463 PF01458 Uncharacterized protein family (UPF0051) Aflv_2464 PF00005 ABC transporter Aflv_2465 PF02627 Carboxymuconolactone decarboxylase family Aflv_2466 PF03180 NLPA lipoprotein Aflv_2467 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2468 PF09383 NIL domain Aflv_2468 PF00005 ABC transporter Aflv_2472 PF01339 CheB methylesterase Aflv_2472 PF00072 Response regulator receiver domain Aflv_2473 PF01053 Cys/Met metabolism PLP-dependent enzyme Aflv_2475 PF00085 Thioredoxin Aflv_2476 PF01751 Toprim domain Aflv_2478 PF01597 Glycine cleavage H-protein Aflv_2479 PF03960 ArsC family Aflv_2480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Aflv_2480 PF02770 Acyl-CoA dehydrogenase, middle domain Aflv_2480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Aflv_2481 PF02803 Thiolase, C-terminal domain Aflv_2481 PF00108 Thiolase, N-terminal domain Aflv_2485 PF14115 YuzL-like protein Aflv_2486 PF01619 Proline dehydrogenase Aflv_2488 PF07875 Coat F domain Aflv_2491 PF03992 Antibiotic biosynthesis monooxygenase Aflv_2493 PF10615 Protein of unknown function (DUF2470) Aflv_2493 PF01243 Pyridoxamine 5'-phosphate oxidase Aflv_2494 PF00005 ABC transporter Aflv_2495 PF01032 FecCD transport family Aflv_2496 PF01497 Periplasmic binding protein Aflv_2497 PF01668 SmpB protein Aflv_2498 PF08206 Ribonuclease B OB domain Aflv_2498 PF17876 Cold shock domain Aflv_2498 PF00575 S1 RNA binding domain Aflv_2498 PF00773 RNB domain Aflv_2499 PF12146 Serine aminopeptidase, S33 Aflv_2500 PF03840 Preprotein translocase SecG subunit Aflv_2503 PF05593 RHS Repeat Aflv_2507 PF05593 RHS Repeat Aflv_2508 PF05593 RHS Repeat Aflv_2510 PF05593 RHS Repeat Aflv_2512 PF05593 RHS Repeat Aflv_2513 PF05593 RHS Repeat Aflv_2514 PF03952 Enolase, N-terminal domain Aflv_2514 PF00113 Enolase, C-terminal TIM barrel domain Aflv_2515 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Aflv_2515 PF01676 Metalloenzyme superfamily Aflv_2516 PF00121 Triosephosphate isomerase Aflv_2517 PF00162 Phosphoglycerate kinase Aflv_2518 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Aflv_2518 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Aflv_2519 PF04198 Putative sugar-binding domain Aflv_2521 PF00309 Sigma-54 factor, Activator interacting domain (AID) Aflv_2521 PF04552 Sigma-54, DNA binding domain Aflv_2521 PF04963 Sigma-54 factor, core binding domain Aflv_2522 PF00574 Clp protease Aflv_2523 PF00381 PTS HPr component phosphorylation site Aflv_2524 PF02650 WhiA C-terminal HTH domain Aflv_2524 PF10298 WhiA N-terminal LAGLIDADG-like domain Aflv_2524 PF14527 WhiA LAGLIDADG-like domain Aflv_2525 PF01933 Uncharacterised protein family UPF0052 Aflv_2526 PF03668 P-loop ATPase protein family Aflv_2527 PF00293 NUDIX domain Aflv_2528 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_2530 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Aflv_2530 PF01502 Phosphoribosyl-AMP cyclohydrolase Aflv_2531 PF00977 Histidine biosynthesis protein Aflv_2532 PF00977 Histidine biosynthesis protein Aflv_2533 PF00117 Glutamine amidotransferase class-I Aflv_2534 PF00475 Imidazoleglycerol-phosphate dehydratase Aflv_2535 PF00815 Histidinol dehydrogenase Aflv_2536 PF01634 ATP phosphoribosyltransferase Aflv_2537 PF13393 Histidyl-tRNA synthetase Aflv_2538 PF14602 Hexapeptide repeat of succinyl-transferase Aflv_2539 PF13419 Haloacid dehalogenase-like hydrolase Aflv_2540 PF07670 Nucleoside recognition Aflv_2541 PF01790 Prolipoprotein diacylglyceryl transferase Aflv_2542 PF02603 HPr Serine kinase N terminus Aflv_2542 PF07475 HPr Serine kinase C-terminal domain Aflv_2543 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV Aflv_2546 PF17755 UvrA DNA-binding domain Aflv_2546 PF17760 UvrA interaction domain Aflv_2546 PF00005 ABC transporter Aflv_2547 PF00271 Helicase conserved C-terminal domain Aflv_2547 PF04851 Type III restriction enzyme, res subunit Aflv_2547 PF02151 UvrB/uvrC motif Aflv_2547 PF12344 Ultra-violet resistance protein B Aflv_2547 PF17757 UvrB interaction domain Aflv_2548 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) Aflv_2549 PF17820 PDZ domain Aflv_2550 PF13411 MerR HTH family regulatory protein Aflv_2551 PF03572 Peptidase family S41 Aflv_2551 PF17820 PDZ domain Aflv_2551 PF01471 Putative peptidoglycan binding domain Aflv_2557 PF04225 Opacity-associated protein A LysM-like domain Aflv_2557 PF01551 Peptidase family M23 Aflv_2558 PF02687 FtsX-like permease family Aflv_2558 PF18075 FtsX extracellular domain Aflv_2559 PF00005 ABC transporter Aflv_2560 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Aflv_2561 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Aflv_2561 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Aflv_2562 PF03462 PCRF domain Aflv_2562 PF00472 RF-1 domain Aflv_2563 PF07517 SecA DEAD-like domain Aflv_2563 PF02810 SEC-C motif Aflv_2563 PF07516 SecA Wing and Scaffold domain Aflv_2563 PF01043 SecA preprotein cross-linking domain Aflv_2565 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Aflv_2565 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Aflv_2566 PF11871 Domain of unknown function (DUF3391) Aflv_2566 PF01966 HD domain Aflv_2569 PF02561 Flagellar protein FliS Aflv_2570 PF02465 Flagellar hook-associated protein 2 N-terminus Aflv_2570 PF07196 Flagellin hook IN motif Aflv_2570 PF07195 Flagellar hook-associated protein 2 C-terminus Aflv_2571 PF03646 FlaG protein Aflv_2572 PF00535 Glycosyl transferase family 2 Aflv_2572 PF13181 Tetratricopeptide repeat Aflv_2573 PF01467 Cytidylyltransferase-like Aflv_2574 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Aflv_2575 PF00535 Glycosyl transferase family 2 Aflv_2575 PF13181 Tetratricopeptide repeat Aflv_2580 PF02599 Global regulator protein family Aflv_2581 PF02623 FliW protein Aflv_2583 PF00669 Bacterial flagellin N-terminal helical region Aflv_2583 PF00700 Bacterial flagellin C-terminal helical region Aflv_2584 PF00460 Flagella basal body rod protein Aflv_2584 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Aflv_2588 PF03885 Protein of unknown function (DUF327) Aflv_2589 PF00700 Bacterial flagellin C-terminal helical region Aflv_2589 PF00669 Bacterial flagellin N-terminal helical region Aflv_2591 PF01312 FlhB HrpN YscU SpaS Family Aflv_2594 PF00271 Helicase conserved C-terminal domain Aflv_2594 PF04851 Type III restriction enzyme, res subunit Aflv_2595 PF02645 Uncharacterised protein, DegV family COG1307 Aflv_2598 PF00072 Response regulator receiver domain Aflv_2598 PF00196 Bacterial regulatory proteins, luxR family Aflv_2599 PF07730 Histidine kinase Aflv_2599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_2599 PF05384 Sensor protein DegS Aflv_2600 PF09186 Domain of unknown function (DUF1949) Aflv_2600 PF01205 Uncharacterized protein family UPF0029 Aflv_2601 PF03816 Cell envelope-related transcriptional attenuator domain Aflv_2602 PF00953 Glycosyl transferase family 4 Aflv_2603 PF08486 Stage II sporulation protein Aflv_2603 PF04122 Putative cell wall binding repeat 2 Aflv_2605 PF01520 N-acetylmuramoyl-L-alanine amidase Aflv_2605 PF00395 S-layer homology domain Aflv_2606 PF00082 Subtilase family Aflv_2607 PF02872 5'-nucleotidase, C-terminal domain Aflv_2607 PF00149 Calcineurin-like phosphoesterase Aflv_2608 PF07833 Copper amine oxidase N-terminal domain Aflv_2609 PF00395 S-layer homology domain Aflv_2609 PF00128 Alpha amylase, catalytic domain Aflv_2609 PF02903 Alpha amylase, N-terminal ig-like domain Aflv_2613 PF03412 Peptidase C39 family Aflv_2613 PF00005 ABC transporter Aflv_2613 PF00664 ABC transporter transmembrane region Aflv_2620 PF00512 His Kinase A (phospho-acceptor) domain Aflv_2620 PF00989 PAS fold Aflv_2620 PF08447 PAS fold Aflv_2620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_2621 PF00196 Bacterial regulatory proteins, luxR family Aflv_2621 PF00072 Response regulator receiver domain Aflv_2628 PF00665 Integrase core domain Aflv_2628 PF13333 Integrase core domain Aflv_2628 PF13276 HTH-like domain Aflv_2631 PF00665 Integrase core domain Aflv_2631 PF02796 Helix-turn-helix domain of resolvase Aflv_2632 PF01695 IstB-like ATP binding protein Aflv_2634 PF00395 S-layer homology domain Aflv_2635 PF00877 NlpC/P60 family Aflv_2635 PF01476 LysM domain Aflv_2636 PF00331 Glycosyl hydrolase family 10 Aflv_2636 PF06452 Carbohydrate family 9 binding domain-like Aflv_2636 PF00395 S-layer homology domain Aflv_2636 PF02018 Carbohydrate binding domain Aflv_2639 PF07517 SecA DEAD-like domain Aflv_2639 PF01043 SecA preprotein cross-linking domain Aflv_2639 PF07516 SecA Wing and Scaffold domain Aflv_2642 PF01381 Helix-turn-helix Aflv_2644 PF14183 YwpF-like protein Aflv_2645 PF04203 Sortase domain Aflv_2647 PF13840 ACT domain Aflv_2647 PF00696 Amino acid kinase family Aflv_2648 PF00696 Amino acid kinase family Aflv_2648 PF13840 ACT domain Aflv_2650 PF06338 ComK protein Aflv_2651 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_2651 PF00672 HAMP domain Aflv_2651 PF02743 Cache domain Aflv_2654 PF14667 Polysaccharide biosynthesis C-terminal domain Aflv_2654 PF01943 Polysaccharide biosynthesis protein Aflv_2655 PF03808 Glycosyl transferase WecB/TagA/CpsF family Aflv_2657 PF02810 SEC-C motif Aflv_2657 PF05225 helix-turn-helix, Psq domain Aflv_2658 PF13509 S1 domain Aflv_2658 PF17783 CvfB-like winged helix domain Aflv_2659 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Aflv_2659 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Aflv_2662 PF13784 Fic/DOC family N-terminal Aflv_2662 PF02661 Fic/DOC family Aflv_2664 PF00176 SNF2 family N-terminal domain Aflv_2664 PF00271 Helicase conserved C-terminal domain Aflv_2664 PF12419 SNF2 Helicase protein Aflv_2665 PF00873 AcrB/AcrD/AcrF family Aflv_2666 PF16363 GDP-mannose 4,6 dehydratase Aflv_2667 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Aflv_2667 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Aflv_2667 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Aflv_2668 PF13407 Periplasmic binding protein domain Aflv_2669 PF02653 Branched-chain amino acid transport system / permease component Aflv_2670 PF00005 ABC transporter Aflv_2671 PF05025 RbsD / FucU transport protein family Aflv_2672 PF00294 pfkB family carbohydrate kinase Aflv_2673 PF00356 Bacterial regulatory proteins, lacI family Aflv_2674 PF00483 Nucleotidyl transferase Aflv_2678 PF07977 FabA-like domain Aflv_2680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Aflv_2680 PF00460 Flagella basal body rod protein Aflv_2681 PF00460 Flagella basal body rod protein Aflv_2681 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Aflv_2682 PF01385 Probable transposase Aflv_2682 PF07282 Putative transposase DNA-binding domain Aflv_2682 PF12323 Helix-turn-helix domain Aflv_2684 PF12116 Stage III sporulation protein D Aflv_2685 PF01551 Peptidase family M23 Aflv_2686 PF08486 Stage II sporulation protein Aflv_2687 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Aflv_2689 PF06612 Protein of unknown function (DUF1146) Aflv_2690 PF00361 Proton-conducting membrane transporter Aflv_2691 PF00361 Proton-conducting membrane transporter Aflv_2692 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Aflv_2692 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Aflv_2692 PF00361 Proton-conducting membrane transporter Aflv_2693 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Aflv_2694 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Aflv_2695 PF00037 4Fe-4S binding domain Aflv_2696 PF00146 NADH dehydrogenase Aflv_2697 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Aflv_2698 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Aflv_2699 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Aflv_2700 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Aflv_2701 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Aflv_2701 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Aflv_2702 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Aflv_2702 PF02874 ATP synthase alpha/beta family, beta-barrel domain Aflv_2703 PF00231 ATP synthase Aflv_2704 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Aflv_2704 PF00306 ATP synthase alpha/beta chain, C terminal domain Aflv_2704 PF02874 ATP synthase alpha/beta family, beta-barrel domain Aflv_2705 PF00213 ATP synthase delta (OSCP) subunit Aflv_2706 PF00430 ATP synthase B/B' CF(0) Aflv_2707 PF00137 ATP synthase subunit C Aflv_2708 PF00119 ATP synthase A chain Aflv_2709 PF03899 ATP synthase I chain Aflv_2711 PF02350 UDP-N-acetylglucosamine 2-epimerase Aflv_2713 PF00464 Serine hydroxymethyltransferase Aflv_2714 PF04260 Protein of unknown function (DUF436) Aflv_2715 PF02502 Ribose/Galactose Isomerase Aflv_2716 PF00672 HAMP domain Aflv_2716 PF02743 Cache domain Aflv_2716 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Aflv_2717 PF01451 Low molecular weight phosphotyrosine protein phosphatase Aflv_2718 PF02659 Putative manganese efflux pump Aflv_2719 PF01300 Telomere recombination Aflv_2719 PF03481 Putative GTP-binding controlling metal-binding Aflv_2720 PF09551 Stage II sporulation protein R (spore_II_R) Aflv_2721 PF17827 PrmC N-terminal domain Aflv_2721 PF13847 Methyltransferase domain Aflv_2722 PF00472 RF-1 domain Aflv_2722 PF03462 PCRF domain Aflv_2723 PF00265 Thymidine kinase Aflv_2724 PF01197 Ribosomal protein L31 Aflv_2725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Aflv_2725 PF07498 Rho termination factor, N-terminal domain Aflv_2725 PF07497 Rho termination factor, RNA-binding domain Aflv_2726 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Aflv_2727 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Aflv_2728 PF00923 Transaldolase/Fructose-6-phosphate aldolase Aflv_2729 PF01116 Fructose-bisphosphate aldolase class-II Aflv_2730 PF00072 Response regulator receiver domain Aflv_2731 PF10740 Domain of unknown function (DUF2529) Aflv_2732 PF00117 Glutamine amidotransferase class-I Aflv_2732 PF06418 CTP synthase N-terminus Aflv_2733 PF05066 HB1, ASXL, restriction endonuclease HTH domain Aflv_2734 PF01642 Methylmalonyl-CoA mutase Aflv_2734 PF02310 B12 binding domain Aflv_2736 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Aflv_2736 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Aflv_2736 PF02770 Acyl-CoA dehydrogenase, middle domain Aflv_2737 PF02770 Acyl-CoA dehydrogenase, middle domain Aflv_2737 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Aflv_2737 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Aflv_2738 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aflv_2738 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Aflv_2739 PF00108 Thiolase, N-terminal domain Aflv_2739 PF02803 Thiolase, C-terminal domain Aflv_2740 PF02754 Cysteine-rich domain Aflv_2740 PF13183 4Fe-4S dicluster domain Aflv_2741 PF13091 PLD-like domain Aflv_2742 PF05746 DALR anticodon binding domain Aflv_2742 PF00750 tRNA synthetases class I (R) Aflv_2742 PF03485 Arginyl tRNA synthetase N terminal domain Aflv_2749 PF00491 Arginase family Aflv_2750 PF17284 Spermidine synthase tetramerisation domain Aflv_2751 PF00912 Transglycosylase Aflv_2751 PF00905 Penicillin binding protein transpeptidase domain Aflv_2752 PF08741 YwhD family Aflv_2753 PF02163 Peptidase family M50 Aflv_2754 PF01361 Tautomerase enzyme Aflv_2756 PF01966 HD domain Aflv_2757 PF07293 Protein of unknown function (DUF1450) Aflv_2759 PF03099 Biotin/lipoate A/B protein ligase family Aflv_2760 PF01515 Phosphate acetyl/butaryl transferase Aflv_2761 PF09335 SNARE associated Golgi protein Aflv_2763 PF07486 Cell Wall Hydrolase Aflv_2764 PF09671 Spore coat protein (Spore_GerQ) Aflv_2765 PF04241 Protein of unknown function (DUF423) Aflv_2766 PF17261 Family of unknown function (DUF5327) Aflv_2768 PF02254 TrkA-N domain Aflv_2768 PF00999 Sodium/hydrogen exchanger family Aflv_2770 PF03167 Uracil DNA glycosylase superfamily Aflv_2771 PF03129 Anticodon binding domain Aflv_2771 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Aflv_2772 PF13192 Thioredoxin domain Aflv_2772 PF07992 Pyridine nucleotide-disulphide oxidoreductase Aflv_2773 PF10417 C-terminal domain of 1-Cys peroxiredoxin Aflv_2773 PF00578 AhpC/TSA family Aflv_2775 PF00535 Glycosyl transferase family 2 Aflv_2776 PF07690 Major Facilitator Superfamily Aflv_2777 PF01385 Probable transposase Aflv_2777 PF07282 Putative transposase DNA-binding domain Aflv_2777 PF12323 Helix-turn-helix domain Aflv_2778 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Aflv_2780 PF01791 DeoC/LacD family aldolase Aflv_2781 PF01773 Na+ dependent nucleoside transporter N-terminus Aflv_2781 PF07662 Na+ dependent nucleoside transporter C-terminus Aflv_2782 PF04198 Putative sugar-binding domain Aflv_2783 PF08244 Glycosyl hydrolases family 32 C terminal Aflv_2783 PF00251 Glycosyl hydrolases family 32 N-terminal domain Aflv_2784 PF00294 pfkB family carbohydrate kinase Aflv_2785 PF02378 Phosphotransferase system, EIIC Aflv_2785 PF00367 phosphotransferase system, EIIB Aflv_2786 PF03123 CAT RNA binding domain Aflv_2786 PF00874 PRD domain Aflv_2787 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Aflv_2788 PF13556 PucR C-terminal helix-turn-helix domain Aflv_2788 PF17853 GGDEF-like domain Aflv_2788 PF06018 CodY GAF-like domain Aflv_2789 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Aflv_2789 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Aflv_2790 PF00005 ABC transporter Aflv_2792 PF00497 Bacterial extracellular solute-binding proteins, family 3 Aflv_2793 PF02901 Pyruvate formate lyase-like Aflv_2793 PF01228 Glycine radical Aflv_2794 PF04055 Radical SAM superfamily Aflv_2795 PF13419 Haloacid dehalogenase-like hydrolase Aflv_2796 PF00588 SpoU rRNA Methylase family Aflv_2796 PF12105 SpoU, rRNA methylase, C-terminal Aflv_2797 PF04073 Aminoacyl-tRNA editing domain Aflv_2799 PF00005 ABC transporter Aflv_2800 PF10920 Protein of unknown function (DUF2705) Aflv_2802 PF10920 Protein of unknown function (DUF2705) Aflv_2803 PF10916 Protein of unknown function (DUF2712) Aflv_2808 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_2808 PF07730 Histidine kinase Aflv_2809 PF00196 Bacterial regulatory proteins, luxR family Aflv_2809 PF00072 Response regulator receiver domain Aflv_2810 PF00005 ABC transporter Aflv_2814 PF00465 Iron-containing alcohol dehydrogenase Aflv_2814 PF00171 Aldehyde dehydrogenase family Aflv_2817 PF00355 Rieske [2Fe-2S] domain Aflv_2817 PF01266 FAD dependent oxidoreductase Aflv_2818 PF03323 Bacillus/Clostridium GerA spore germination protein Aflv_2819 PF03845 Spore germination protein Aflv_2821 PF08402 TOBE domain Aflv_2821 PF00005 ABC transporter Aflv_2822 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2823 PF00528 Binding-protein-dependent transport system inner membrane component Aflv_2824 PF13416 Bacterial extracellular solute-binding protein Aflv_2825 PF00854 POT family Aflv_2827 PF00005 ABC transporter Aflv_2827 PF02687 FtsX-like permease family Aflv_2827 PF12704 MacB-like periplasmic core domain Aflv_2832 PF02590 Predicted SPOUT methyltransferase Aflv_2834 PF13180 PDZ domain Aflv_2835 PF00753 Metallo-beta-lactamase superfamily Aflv_2836 PF09648 YycH protein Aflv_2839 PF00512 His Kinase A (phospho-acceptor) domain Aflv_2839 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Aflv_2839 PF00672 HAMP domain Aflv_2839 PF13426 PAS domain Aflv_2840 PF00072 Response regulator receiver domain Aflv_2840 PF00486 Transcriptional regulatory protein, C terminal Aflv_2841 PF00709 Adenylosuccinate synthetase Aflv_2842 PF00772 DnaB-like helicase N terminal domain Aflv_2842 PF03796 DnaB-like helicase C terminal domain Aflv_2843 PF03948 Ribosomal protein L9, C-terminal domain Aflv_2843 PF01281 Ribosomal protein L9, N-terminal domain Aflv_2844 PF01368 DHH family Aflv_2844 PF02272 DHHA1 domain Aflv_2845 PF09991 Predicted membrane protein (DUF2232) Aflv_2846 PF01084 Ribosomal protein S18 Aflv_2847 PF00436 Single-strand binding protein family Aflv_2848 PF01250 Ribosomal protein S6 Aflv_2849 PF01926 50S ribosome-binding GTPase Aflv_2849 PF06071 Protein of unknown function (DUF933) Aflv_2850 PF06107 Bacterial protein of unknown function (DUF951) Aflv_2851 PF00924 Mechanosensitive ion channel Aflv_2852 PF06866 Protein of unknown function (DUF1256) Aflv_2853 PF04474 Protein of unknown function (DUF554) Aflv_2854 PF02195 ParB-like nuclease domain Aflv_2854 PF17762 HTH domain found in ParB protein Aflv_2855 PF13614 AAA domain Aflv_2856 PF17762 HTH domain found in ParB protein Aflv_2856 PF02195 ParB-like nuclease domain Aflv_2857 PF02527 rRNA small subunit methyltransferase G Aflv_2858 PF01134 Glucose inhibited division protein A Aflv_2858 PF13932 GidA associated domain Aflv_2859 PF12631 MnmE helical domain Aflv_2859 PF01926 50S ribosome-binding GTPase Aflv_2859 PF10396 GTP-binding protein TrmE N-terminus Aflv_2860 PF14804 Jag N-terminus Aflv_2860 PF01424 R3H domain Aflv_2861 PF02096 60Kd inner membrane protein Aflv_2862 PF00825 Ribonuclease P Aflv_2863 PF00468 Ribosomal protein L34 Aflv_R040 PF05698 Bacterial trigger factor protein (TF) C-terminus Aflv_R040 PF05697 Bacterial trigger factor protein (TF) Aflv_R063 PF05697 Bacterial trigger factor protein (TF) Aflv_R063 PF05698 Bacterial trigger factor protein (TF) C-terminus