Aflv_0001 SM00382 ATPases associated with a variety of cellular activities Aflv_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Aflv_0002 SM00480 DNA polymerase III beta subunit Aflv_0005 SM00387 Histidine kinase-like ATPases Aflv_0005 SM00433 TopoisomeraseII Aflv_0006 SM00434 DNA Topoisomerase IV Aflv_0007 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_0009 SM00116 Domain in cystathionine beta-synthase and other proteins. Aflv_0009 SM01240 Aflv_0009 Aflv_0010 SM00936 Penicillin-binding protein 5, C-terminal domain Aflv_0017 SM00382 ATPases associated with a variety of cellular activities Aflv_0019 SM00493 Aflv_0019 Aflv_0031 SM00966 SpoVT / AbrB like domain Aflv_0034 SM01208 Aflv_0034 Aflv_0035 SM00493 Aflv_0035 Aflv_0036 SM00650 Ribosomal RNA adenine dimethylases Aflv_0044 SM01400 Aflv_0044 Aflv_0048 SM00487 DEAD-like helicases superfamily Aflv_0048 SM00490 helicase superfamily c-terminal domain Aflv_0048 SM00982 Aflv_0048 Aflv_0048 SM01058 CarD-like/TRCF domain Aflv_0049 SM00966 SpoVT / AbrB like domain Aflv_0052 SM00363 S4 RNA-binding domain Aflv_0056 SM00316 Ribosomal protein S1-like RNA-binding domain Aflv_0057 SM00331 Sigma factor PP2C-like phosphatases Aflv_0057 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Aflv_0059 SM00220 Serine/Threonine protein kinases, catalytic domain Aflv_0060 SM00977 TilS substrate C-terminal domain Aflv_0062 SM00382 ATPases associated with a variety of cellular activities Aflv_0070 SM00905 Dihydroneopterin aldolase Aflv_0077 SM00382 ATPases associated with a variety of cellular activities Aflv_0077 SM01086 C-terminal, D2-small domain, of ClpB protein Aflv_0078 SM00382 ATPases associated with a variety of cellular activities Aflv_0079 SM00670 Large family of predicted nucleotide-binding domains Aflv_0084 SM00840 Aflv_0084 Aflv_0085 SM00535 Ribonuclease III family Aflv_0086 SM00967 RNA 2'-O ribose methyltransferase substrate binding Aflv_0091 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Aflv_0091 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Aflv_0092 SM00649 Ribosomal protein L11/L12 Aflv_0098 SM00663 RNA polymerase I subunit A N-terminus Aflv_0102 SM00838 Elongation factor G C-terminus Aflv_0102 SM00889 Elongation factor G, domain IV Aflv_0104 SM01403 Aflv_0104 Aflv_0108 SM01382 Aflv_0108 Aflv_0108 SM01383 Aflv_0108 Aflv_0111 SM00322 K homology RNA-binding domain Aflv_0115 SM01374 Aflv_0115 Aflv_0116 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Aflv_0128 SM00316 Ribosomal protein S1-like RNA-binding domain Aflv_0132 SM00662 RNA polymerases D Aflv_0134 SM00382 ATPases associated with a variety of cellular activities Aflv_0135 SM00382 ATPases associated with a variety of cellular activities Aflv_0141 SM00646 Aflv_0141 Aflv_0144 SM01251 Aflv_0144 Aflv_0158 SM00563 Phosphate acyltransferases Aflv_0166 SM00966 SpoVT / AbrB like domain Aflv_0171 SM00387 Histidine kinase-like ATPases Aflv_0172 SM00421 helix_turn_helix, Lux Regulon Aflv_0172 SM00448 cheY-homologous receiver domain Aflv_0173 SM00422 helix_turn_helix, mercury resistance Aflv_0181 SM00878 Biotin carboxylase C-terminal domain Aflv_0194 SM00487 DEAD-like helicases superfamily Aflv_0194 SM00490 helicase superfamily c-terminal domain Aflv_0197 SM01005 Alanine racemase, C-terminal domain Aflv_0200 SM00316 Ribosomal protein S1-like RNA-binding domain Aflv_0200 SM00732 Likely ribonuclease with RNase H fold. Aflv_0202 SM00731 SprT homologues. Aflv_0207 SM00382 ATPases associated with a variety of cellular activities Aflv_0208 SM00881 CoA binding domain Aflv_0211 SM00883 Chaperonin 10 Kd subunit Aflv_0217 SM01209 Aflv_0217 Aflv_0228 SM01001 AIR carboxylase Aflv_0230 SM00998 Adenylosuccinate lyase C-terminus Aflv_0233 SM01211 Aflv_0233 Aflv_0238 SM00798 AICARFT/IMPCHase bienzyme Aflv_0238 SM00851 MGS-like domain Aflv_0239 SM01209 Aflv_0239 Aflv_0239 SM01210 Aflv_0239 Aflv_0247 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Aflv_0247 SM00292 breast cancer carboxy-terminal domain Aflv_0247 SM00532 Ligase N family Aflv_0260 SM00845 GatB domain Aflv_0276 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_0280 SM00387 Histidine kinase-like ATPases Aflv_0280 SM00388 His Kinase A (phosphoacceptor) domain Aflv_0281 SM00448 cheY-homologous receiver domain Aflv_0281 SM00862 Transcriptional regulatory protein, C terminal Aflv_0284 SM00450 Rhodanese Homology Domain Aflv_0284 SM00849 Metallo-beta-lactamase superfamily Aflv_0285 SM00387 Histidine kinase-like ATPases Aflv_0286 SM00421 helix_turn_helix, Lux Regulon Aflv_0286 SM00448 cheY-homologous receiver domain Aflv_0288 SM00046 Diacylglycerol kinase catalytic domain (presumed) Aflv_0292 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_0299 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_0303 SM00450 Rhodanese Homology Domain Aflv_0305 SM00899 Aflv_0305 Aflv_0317 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_0319 SM00226 Low molecular weight phosphatase family Aflv_0330 SM00478 endonuclease III Aflv_0333 SM00487 DEAD-like helicases superfamily Aflv_0333 SM00490 helicase superfamily c-terminal domain Aflv_0336 SM00419 helix_turn_helix, cAMP Regulatory protein Aflv_0338 SM00829 Enoylreductase Aflv_0339 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_0339 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_0346 SM00822 Aflv_0346 Aflv_0352 SM00478 endonuclease III Aflv_0356 SM00382 ATPases associated with a variety of cellular activities Aflv_0357 SM00382 ATPases associated with a variety of cellular activities Aflv_0364 SM00382 ATPases associated with a variety of cellular activities Aflv_0373 SM00642 Alpha-amylase domain Aflv_0397 SM00833 Cobalamin synthesis protein cobW C-terminal domain Aflv_0398 SM01234 Aflv_0398 Aflv_0405 SM00382 ATPases associated with a variety of cellular activities Aflv_0409 SM00382 ATPases associated with a variety of cellular activities Aflv_0412 SM00257 Lysin motif Aflv_0412 SM00644 Aflv_0412 Aflv_0412 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. Aflv_0415 SM00014 Acid phosphatase homologues Aflv_0421 SM00729 Elongator protein 3, MiaB family, Radical SAM Aflv_0426 SM00450 Rhodanese Homology Domain Aflv_0430 SM00363 S4 RNA-binding domain Aflv_0431 SM00420 helix_turn_helix, Deoxyribose operon repressor Aflv_0438 SM00642 Alpha-amylase domain Aflv_0442 SM00849 Metallo-beta-lactamase superfamily Aflv_0449 SM00382 ATPases associated with a variety of cellular activities Aflv_0449 SM00843 Aflv_0449 Aflv_0456 SM00842 Cell division protein FtsA Aflv_0457 SM00830 Chorismate mutase type II Aflv_0458 SM00354 helix_turn _helix lactose operon repressor Aflv_0460 SM00116 Domain in cystathionine beta-synthase and other proteins. Aflv_0464 SM00363 S4 RNA-binding domain Aflv_0465 SM00363 S4 RNA-binding domain Aflv_0465 SM01390 Aflv_0465 Aflv_0466 SM00267 diguanylate cyclase Aflv_0467 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Aflv_0472 SM00981 Aflv_0472 Aflv_0488 SM00849 Metallo-beta-lactamase superfamily Aflv_0489 SM00116 Domain in cystathionine beta-synthase and other proteins. Aflv_0494 SM00481 DNA polymerase alpha chain like domain Aflv_0495 SM00919 Malic enzyme, NAD binding domain Aflv_0495 SM01274 Aflv_0495 Aflv_0496 SM00345 helix_turn_helix gluconate operon transcriptional repressor Aflv_0505 SM01329 Aflv_0505 Aflv_0508 SM00448 cheY-homologous receiver domain Aflv_0508 SM00862 Transcriptional regulatory protein, C terminal Aflv_0509 SM00091 PAS domain Aflv_0509 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_0509 SM00387 Histidine kinase-like ATPases Aflv_0509 SM00388 His Kinase A (phosphoacceptor) domain Aflv_0510 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Aflv_0510 SM00474 3'-5' exonuclease Aflv_0510 SM00475 5'-3' exonuclease Aflv_0510 SM00482 DNA polymerase A domain Aflv_0511 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Aflv_0511 SM01232 Aflv_0511 Aflv_0514 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Aflv_0519 SM00382 ATPases associated with a variety of cellular activities Aflv_0521 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Aflv_0528 SM00345 helix_turn_helix gluconate operon transcriptional repressor Aflv_0529 SM01007 Class II Aldolase and Adducin N-terminal domain Aflv_0533 SM00813 Alpha-L-arabinofuranosidase C-terminus Aflv_0537 SM00354 helix_turn _helix lactose operon repressor Aflv_0541 SM00967 RNA 2'-O ribose methyltransferase substrate binding Aflv_0543 SM00873 B3/4 domain Aflv_0543 SM00874 tRNA synthetase B5 domain Aflv_0543 SM00896 Ferredoxin-fold anticodon binding domain Aflv_0549 SM00387 Histidine kinase-like ATPases Aflv_0550 SM00421 helix_turn_helix, Lux Regulon Aflv_0550 SM00448 cheY-homologous receiver domain Aflv_0556 SM00347 helix_turn_helix multiple antibiotic resistance protein Aflv_0560 SM00481 DNA polymerase alpha chain like domain Aflv_0560 SM00483 DNA polymerase X family Aflv_0561 SM00463 Small MutS-related domain Aflv_0561 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Aflv_0561 SM00534 ATPase domain of DNA mismatch repair MUTS family Aflv_0567 SM00893 Electron transfer flavoprotein domain Aflv_0568 SM00893 Electron transfer flavoprotein domain Aflv_0578 SM00465 GIY-YIG type nucleases (URI domain) Aflv_0584 SM00421 helix_turn_helix, Lux Regulon Aflv_0586 SM00909 Sporulation and spore germination Aflv_0594 SM00917 LeuA allosteric (dimerisation) domain Aflv_0595 SM01329 Aflv_0595 Aflv_0600 SM00382 ATPases associated with a variety of cellular activities Aflv_0600 SM00994 ClpX C4-type zinc finger Aflv_0600 SM01086 C-terminal, D2-small domain, of ClpB protein Aflv_0601 SM00382 ATPases associated with a variety of cellular activities Aflv_0602 SM00382 ATPases associated with a variety of cellular activities Aflv_0602 SM00464 Found in ATP-dependent protease La (LON) Aflv_0609 SM01004 Delta-aminolevulinic acid dehydratase Aflv_0611 SM00257 Lysin motif Aflv_0616 SM00635 Bacterial Ig-like domain 2 Aflv_0617 SM00248 ankyrin repeats Aflv_0623 SM01208 Aflv_0623 Aflv_0624 SM00382 ATPases associated with a variety of cellular activities Aflv_0625 SM00382 ATPases associated with a variety of cellular activities Aflv_0636 SM00857 Resolvase, N terminal domain Aflv_0639 SM00530 Helix-turn-helix XRE-family like proteins Aflv_0648 SM00990 Aflv_0648 Aflv_0656 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Aflv_0659 SM00507 HNH nucleases Aflv_0682 SM00530 Helix-turn-helix XRE-family like proteins Aflv_0697 SM01317 Aflv_0697 Aflv_0706 SM00257 Lysin motif Aflv_0711 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Aflv_0712 SM00382 ATPases associated with a variety of cellular activities Aflv_0717 SM01323 Aflv_0717 Aflv_0726 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_0726 SM00954 Region found in RelA / SpoT proteins Aflv_0729 SM00287 Bacterial SH3 domain homologues Aflv_0729 SM00646 Aflv_0729 Aflv_0735 SM00382 ATPases associated with a variety of cellular activities Aflv_0739 SM00028 Tetratricopeptide repeats Aflv_0739 SM00671 Sel1-like repeats. Aflv_0740 SM00382 ATPases associated with a variety of cellular activities Aflv_0744 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Aflv_0746 SM00732 Likely ribonuclease with RNase H fold. Aflv_0763 SM00318 Staphylococcal nuclease homologues Aflv_0768 SM00487 DEAD-like helicases superfamily Aflv_0768 SM00490 helicase superfamily c-terminal domain Aflv_0773 SM00382 ATPases associated with a variety of cellular activities Aflv_0778 SM00530 Helix-turn-helix XRE-family like proteins Aflv_0779 SM00530 Helix-turn-helix XRE-family like proteins Aflv_0784 SM00885 D5 N terminal like Aflv_0784 SM00942 Primase C terminal 1 (PriCT-1) Aflv_0803 SM00857 Resolvase, N terminal domain Aflv_0814 SM01103 Aflv_0814 Aflv_0816 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_0820 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Aflv_0823 SM00849 Metallo-beta-lactamase superfamily Aflv_0826 SM00100 Cyclic nucleotide-monophosphate binding domain Aflv_0826 SM00419 helix_turn_helix, cAMP Regulatory protein Aflv_0831 SM00838 Elongation factor G C-terminus Aflv_0832 SM00729 Elongator protein 3, MiaB family, Radical SAM Aflv_0836 SM00271 DnaJ molecular chaperone homology domain Aflv_0839 SM00729 Elongator protein 3, MiaB family, Radical SAM Aflv_0853 SM00116 Domain in cystathionine beta-synthase and other proteins. Aflv_0855 SM00400 zinc finger Aflv_0855 SM00493 Aflv_0855 Aflv_0863 SM00487 DEAD-like helicases superfamily Aflv_0863 SM00490 helicase superfamily c-terminal domain Aflv_0864 SM00518 AP endonuclease family 2 Aflv_0867 SM00382 ATPases associated with a variety of cellular activities Aflv_0874 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_0874 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_0882 SM00382 ATPases associated with a variety of cellular activities Aflv_0891 SM00028 Tetratricopeptide repeats Aflv_0897 SM00631 Aflv_0897 Aflv_0899 SM00849 Metallo-beta-lactamase superfamily Aflv_0902 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Aflv_0904 SM00382 ATPases associated with a variety of cellular activities Aflv_0914 SM00487 DEAD-like helicases superfamily Aflv_0914 SM00490 helicase superfamily c-terminal domain Aflv_0918 SM00450 Rhodanese Homology Domain Aflv_0923 SM00529 Helix-turn-helix diphteria tox regulatory element Aflv_0930 SM00841 Elongation factor P, C-terminal Aflv_0930 SM01185 Aflv_0930 Aflv_0932 SM00382 ATPases associated with a variety of cellular activities Aflv_0941 SM00878 Biotin carboxylase C-terminal domain Aflv_0948 SM00861 Transketolase, pyrimidine binding domain Aflv_0949 SM00363 S4 RNA-binding domain Aflv_0952 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Aflv_0953 SM00448 cheY-homologous receiver domain Aflv_0957 SM00091 PAS domain Aflv_0957 SM00382 ATPases associated with a variety of cellular activities Aflv_0959 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Aflv_0963 SM00861 Transketolase, pyrimidine binding domain Aflv_0974 SM00260 Two component signalling adaptor domain Aflv_0976 SM01350 Aflv_0976 Aflv_0983 SM00849 Metallo-beta-lactamase superfamily Aflv_0986 SM00704 CDGSH-type zinc finger. Function unknown. Aflv_1000 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Aflv_1001 SM00936 Penicillin-binding protein 5, C-terminal domain Aflv_1003 SM00387 Histidine kinase-like ATPases Aflv_1028 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Aflv_1035 SM00363 S4 RNA-binding domain Aflv_1039 SM00448 cheY-homologous receiver domain Aflv_1039 SM00862 Transcriptional regulatory protein, C terminal Aflv_1040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_1040 SM00387 Histidine kinase-like ATPases Aflv_1040 SM00388 His Kinase A (phosphoacceptor) domain Aflv_1043 SM00382 ATPases associated with a variety of cellular activities Aflv_1048 SM00855 Phosphoglycerate mutase family Aflv_1059 SM00487 DEAD-like helicases superfamily Aflv_1059 SM00490 helicase superfamily c-terminal domain Aflv_1061 SM00257 Lysin motif Aflv_1065 SM00422 helix_turn_helix, mercury resistance Aflv_1068 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Aflv_1078 SM00563 Phosphate acyltransferases Aflv_1079 SM00316 Ribosomal protein S1-like RNA-binding domain Aflv_1080 SM01240 Aflv_1080 Aflv_1090 SM00411 bacterial (prokaryotic) histone like domain Aflv_1096 SM00562 Aflv_1096 Aflv_1097 SM00138 Methyltransferase, chemotaxis proteins Aflv_1110 SM00028 Tetratricopeptide repeats Aflv_1111 SM00914 Aflv_1111 Aflv_1121 SM00851 MGS-like domain Aflv_1129 SM00479 Aflv_1129 Aflv_1129 SM00491 Aflv_1129 Aflv_1136 SM00478 endonuclease III Aflv_1136 SM00525 Aflv_1136 Aflv_1142 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Aflv_1154 SM00267 diguanylate cyclase Aflv_1158 SM00052 Putative diguanylate phosphodiesterase Aflv_1158 SM00267 diguanylate cyclase Aflv_1159 SM00382 ATPases associated with a variety of cellular activities Aflv_1169 SM00487 DEAD-like helicases superfamily Aflv_1169 SM00490 helicase superfamily c-terminal domain Aflv_1180 SM00342 helix_turn_helix, arabinose operon control protein Aflv_1181 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Aflv_1185 SM00829 Enoylreductase Aflv_1203 SM01266 Aflv_1203 Aflv_1204 SM00729 Elongator protein 3, MiaB family, Radical SAM Aflv_1213 SM00640 Glycosyl hydrolases family 32 Aflv_1231 SM00871 Bacterial transcription activator, effector binding domain Aflv_1233 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_1248 SM00893 Electron transfer flavoprotein domain Aflv_1249 SM00893 Electron transfer flavoprotein domain Aflv_1264 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Aflv_1264 SM00475 5'-3' exonuclease Aflv_1269 SM00382 ATPases associated with a variety of cellular activities Aflv_1272 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Aflv_1274 SM00382 ATPases associated with a variety of cellular activities Aflv_1277 SM01245 Aflv_1277 Aflv_1279 SM00422 helix_turn_helix, mercury resistance Aflv_1290 SM00382 ATPases associated with a variety of cellular activities Aflv_1299 SM00450 Rhodanese Homology Domain Aflv_1300 SM00450 Rhodanese Homology Domain Aflv_1304 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_1304 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_1308 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_1308 SM00387 Histidine kinase-like ATPases Aflv_1309 SM00342 helix_turn_helix, arabinose operon control protein Aflv_1309 SM00448 cheY-homologous receiver domain Aflv_1311 SM00382 ATPases associated with a variety of cellular activities Aflv_1313 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Aflv_1326 SM00382 ATPases associated with a variety of cellular activities Aflv_1327 SM00382 ATPases associated with a variety of cellular activities Aflv_1334 SM00479 Aflv_1334 Aflv_1335 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Aflv_1337 SM00052 Putative diguanylate phosphodiesterase Aflv_1337 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Aflv_1337 SM00091 PAS domain Aflv_1337 SM00267 diguanylate cyclase Aflv_1338 SM00710 Parallel beta-helix repeats Aflv_1338 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses Aflv_1341 SM00382 ATPases associated with a variety of cellular activities Aflv_1342 SM00855 Phosphoglycerate mutase family Aflv_1343 SM00318 Staphylococcal nuclease homologues Aflv_1348 SM00331 Sigma factor PP2C-like phosphatases Aflv_1348 SM00448 cheY-homologous receiver domain Aflv_1352 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_1355 SM00052 Putative diguanylate phosphodiesterase Aflv_1355 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Aflv_1355 SM00091 PAS domain Aflv_1355 SM00267 diguanylate cyclase Aflv_1356 SM00981 Aflv_1356 Aflv_1357 SM00491 Aflv_1357 Aflv_1376 SM00729 Elongator protein 3, MiaB family, Radical SAM Aflv_1376 SM00876 Biotin and Thiamin Synthesis associated domain Aflv_1390 SM00387 Histidine kinase-like ATPases Aflv_1390 SM00388 His Kinase A (phosphoacceptor) domain Aflv_1397 SM00345 helix_turn_helix gluconate operon transcriptional repressor Aflv_1398 SM00382 ATPases associated with a variety of cellular activities Aflv_1402 SM00357 Cold shock protein domain Aflv_1403 SM01230 Aflv_1403 Aflv_1405 SM00382 ATPases associated with a variety of cellular activities Aflv_1408 SM00849 Metallo-beta-lactamase superfamily Aflv_1410 SM00833 Cobalamin synthesis protein cobW C-terminal domain Aflv_1412 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Aflv_1414 SM00226 Low molecular weight phosphatase family Aflv_1418 SM00822 Aflv_1418 Aflv_1419 SM00382 ATPases associated with a variety of cellular activities Aflv_1423 SM00422 helix_turn_helix, mercury resistance Aflv_1431 SM00327 von Willebrand factor (vWF) type A domain Aflv_1432 SM00382 ATPases associated with a variety of cellular activities Aflv_1439 SM00345 helix_turn_helix gluconate operon transcriptional repressor Aflv_1439 SM00866 Aflv_1439 Aflv_1440 SM00642 Alpha-amylase domain Aflv_1443 SM00434 DNA Topoisomerase IV Aflv_1444 SM00387 Histidine kinase-like ATPases Aflv_1444 SM00433 TopoisomeraseII Aflv_1445 SM00881 CoA binding domain Aflv_1446 SM01207 Aflv_1446 Aflv_1458 SM00465 GIY-YIG type nucleases (URI domain) Aflv_1472 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_1472 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_1474 SM00387 Histidine kinase-like ATPases Aflv_1474 SM00388 His Kinase A (phosphoacceptor) domain Aflv_1478 SM00420 helix_turn_helix, Deoxyribose operon repressor Aflv_1478 SM01134 Aflv_1478 Aflv_1479 SM00267 diguanylate cyclase Aflv_1479 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_1485 SM00357 Cold shock protein domain Aflv_1499 SM00448 cheY-homologous receiver domain Aflv_1502 SM00861 Transketolase, pyrimidine binding domain Aflv_1504 SM00857 Resolvase, N terminal domain Aflv_1505 SM00257 Lysin motif Aflv_1507 SM01230 Aflv_1507 Aflv_1508 SM00422 helix_turn_helix, mercury resistance Aflv_1516 SM00382 ATPases associated with a variety of cellular activities Aflv_1519 SM00853 MutL C terminal dimerisation domain Aflv_1519 SM01340 Aflv_1519 Aflv_1520 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Aflv_1520 SM00534 ATPase domain of DNA mismatch repair MUTS family Aflv_1523 SM00729 Elongator protein 3, MiaB family, Radical SAM Aflv_1529 SM00322 K homology RNA-binding domain Aflv_1529 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_1530 SM00382 ATPases associated with a variety of cellular activities Aflv_1531 SM00852 Probable molybdopterin binding domain Aflv_1533 SM00530 Helix-turn-helix XRE-family like proteins Aflv_1540 SM00450 Rhodanese Homology Domain Aflv_1541 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Aflv_1541 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Aflv_1541 SM00493 Aflv_1541 Aflv_1544 SM00422 helix_turn_helix, mercury resistance Aflv_1557 SM00387 Histidine kinase-like ATPases Aflv_1557 SM00388 His Kinase A (phosphoacceptor) domain Aflv_1560 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Aflv_1569 SM00346 helix_turn_helix isocitrate lyase regulation Aflv_1573 SM00382 ATPases associated with a variety of cellular activities Aflv_1574 SM00244 prohibitin homologues Aflv_1576 SM00257 Lysin motif Aflv_1578 SM00347 helix_turn_helix multiple antibiotic resistance protein Aflv_1587 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Aflv_1594 SM00382 ATPases associated with a variety of cellular activities Aflv_1606 SM00849 Metallo-beta-lactamase superfamily Aflv_1608 SM00530 Helix-turn-helix XRE-family like proteins Aflv_1613 SM00966 SpoVT / AbrB like domain Aflv_1624 SM00567 E-Z type HEAT repeats Aflv_1624 SM00932 Scaffold protein Nfu/NifU N terminal Aflv_1627 SM00950 Aflv_1627 Aflv_1638 SM00382 ATPases associated with a variety of cellular activities Aflv_1649 SM00347 helix_turn_helix multiple antibiotic resistance protein Aflv_1653 SM00267 diguanylate cyclase Aflv_1660 SM00854 Bacterial capsule synthesis protein PGA_cap Aflv_1674 SM00382 ATPases associated with a variety of cellular activities Aflv_1676 SM00345 helix_turn_helix gluconate operon transcriptional repressor Aflv_1676 SM00866 Aflv_1676 Aflv_1677 SM00382 ATPases associated with a variety of cellular activities Aflv_1677 SM00843 Aflv_1677 Aflv_1680 SM00849 Metallo-beta-lactamase superfamily Aflv_1681 SM01130 Aflv_1681 Aflv_1683 SM00859 Semialdehyde dehydrogenase, NAD binding domain Aflv_1685 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Aflv_1689 SM00316 Ribosomal protein S1-like RNA-binding domain Aflv_1689 SM00322 K homology RNA-binding domain Aflv_1690 SM01387 Aflv_1690 Aflv_1691 SM00904 Riboflavin kinase Aflv_1698 SM00316 Ribosomal protein S1-like RNA-binding domain Aflv_1698 SM00322 K homology RNA-binding domain Aflv_1700 SM00479 Aflv_1700 Aflv_1700 SM00481 DNA polymerase alpha chain like domain Aflv_1702 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Aflv_1716 SM00260 Two component signalling adaptor domain Aflv_1717 SM00073 Histidine Phosphotransfer domain Aflv_1717 SM00260 Two component signalling adaptor domain Aflv_1717 SM00387 Histidine kinase-like ATPases Aflv_1717 SM01231 Aflv_1717 Aflv_1718 SM00448 cheY-homologous receiver domain Aflv_1720 SM00382 ATPases associated with a variety of cellular activities Aflv_1720 SM00962 SRP54-type protein, GTPase domain Aflv_1727 SM00448 cheY-homologous receiver domain Aflv_1738 SM00382 ATPases associated with a variety of cellular activities Aflv_1746 SM00382 ATPases associated with a variety of cellular activities Aflv_1746 SM01086 C-terminal, D2-small domain, of ClpB protein Aflv_1750 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Aflv_1750 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Aflv_1750 SM00493 Aflv_1750 Aflv_1752 SM00881 CoA binding domain Aflv_1765 SM00382 ATPases associated with a variety of cellular activities Aflv_1765 SM00962 SRP54-type protein, GTPase domain Aflv_1765 SM00963 SRP54-type protein, helical bundle domain Aflv_1767 SM00382 ATPases associated with a variety of cellular activities Aflv_1767 SM00962 SRP54-type protein, GTPase domain Aflv_1767 SM00963 SRP54-type protein, helical bundle domain Aflv_1768 SM00968 SMC proteins Flexible Hinge Domain Aflv_1770 SM00358 Double-stranded RNA binding motif Aflv_1770 SM00535 Ribonuclease III family Aflv_1772 SM00822 Aflv_1772 Aflv_1773 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Aflv_1776 SM00487 DEAD-like helicases superfamily Aflv_1776 SM00490 helicase superfamily c-terminal domain Aflv_1779 SM01120 Aflv_1779 Aflv_1779 SM01121 Aflv_1779 Aflv_1783 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Aflv_1786 SM00220 Serine/Threonine protein kinases, catalytic domain Aflv_1786 SM00740 Aflv_1786 Aflv_1787 SM00331 Sigma factor PP2C-like phosphatases Aflv_1787 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Aflv_1792 SM00487 DEAD-like helicases superfamily Aflv_1792 SM00490 helicase superfamily c-terminal domain Aflv_1794 SM01409 Aflv_1794 Aflv_1795 SM00072 Guanylate kinase homologues. Aflv_1797 SM00831 Cation transporter/ATPase, N-terminus Aflv_1800 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Aflv_1803 SM00851 MGS-like domain Aflv_1803 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Aflv_1804 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Aflv_1809 SM00363 S4 RNA-binding domain Aflv_1814 SM00363 S4 RNA-binding domain Aflv_1823 SM00864 Tubulin/FtsZ family, GTPase domain Aflv_1823 SM00865 Tubulin/FtsZ family, C-terminal domain Aflv_1824 SM00842 Cell division protein FtsA Aflv_1835 SM00740 Aflv_1835 Aflv_1836 SM00740 Aflv_1836 Aflv_1847 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Aflv_1860 SM00116 Domain in cystathionine beta-synthase and other proteins. Aflv_1871 SM00878 Biotin carboxylase C-terminal domain Aflv_1875 SM00670 Large family of predicted nucleotide-binding domains Aflv_1881 SM00838 Elongation factor G C-terminus Aflv_1893 SM00861 Transketolase, pyrimidine binding domain Aflv_1899 SM00849 Metallo-beta-lactamase superfamily Aflv_1908 SM00052 Putative diguanylate phosphodiesterase Aflv_1916 SM00052 Putative diguanylate phosphodiesterase Aflv_1916 SM00267 diguanylate cyclase Aflv_1921 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Aflv_1921 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_1921 SM00387 Histidine kinase-like ATPases Aflv_1921 SM00388 His Kinase A (phosphoacceptor) domain Aflv_1921 SM00448 cheY-homologous receiver domain Aflv_1922 SM00448 cheY-homologous receiver domain Aflv_1926 SM00267 diguanylate cyclase Aflv_1926 SM00448 cheY-homologous receiver domain Aflv_1927 SM00260 Two component signalling adaptor domain Aflv_1927 SM00448 cheY-homologous receiver domain Aflv_1930 SM00387 Histidine kinase-like ATPases Aflv_1930 SM00388 His Kinase A (phosphoacceptor) domain Aflv_1932 SM00914 Aflv_1932 Aflv_1936 SM00267 diguanylate cyclase Aflv_1936 SM00448 cheY-homologous receiver domain Aflv_1937 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Aflv_1937 SM00387 Histidine kinase-like ATPases Aflv_1937 SM00388 His Kinase A (phosphoacceptor) domain Aflv_1938 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_1938 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_1942 SM01061 CAT RNA binding domain Aflv_1944 SM00257 Lysin motif Aflv_1953 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_1960 SM00387 Histidine kinase-like ATPases Aflv_1960 SM00388 His Kinase A (phosphoacceptor) domain Aflv_1979 SM00448 cheY-homologous receiver domain Aflv_1979 SM00862 Transcriptional regulatory protein, C terminal Aflv_1980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_1980 SM00387 Histidine kinase-like ATPases Aflv_1980 SM00388 His Kinase A (phosphoacceptor) domain Aflv_1981 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Aflv_1981 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_1984 SM00382 ATPases associated with a variety of cellular activities Aflv_1984 SM01086 C-terminal, D2-small domain, of ClpB protein Aflv_1987 SM00382 ATPases associated with a variety of cellular activities Aflv_1992 SM00387 Histidine kinase-like ATPases Aflv_1992 SM00388 His Kinase A (phosphoacceptor) domain Aflv_1995 SM01007 Class II Aldolase and Adducin N-terminal domain Aflv_2003 SM00382 ATPases associated with a variety of cellular activities Aflv_2005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_2006 SM00091 PAS domain Aflv_2006 SM00387 Histidine kinase-like ATPases Aflv_2006 SM00388 His Kinase A (phosphoacceptor) domain Aflv_2010 SM00345 helix_turn_helix gluconate operon transcriptional repressor Aflv_2010 SM00895 Aflv_2010 Aflv_2016 SM00729 Elongator protein 3, MiaB family, Radical SAM Aflv_2026 SM00354 helix_turn _helix lactose operon repressor Aflv_2027 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_2027 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_2035 SM00387 Histidine kinase-like ATPases Aflv_2035 SM00388 His Kinase A (phosphoacceptor) domain Aflv_2045 SM00919 Malic enzyme, NAD binding domain Aflv_2045 SM01274 Aflv_2045 Aflv_2047 SM00870 Aflv_2047 Aflv_2049 SM00219 Tyrosine kinase, catalytic domain Aflv_2057 SM00487 DEAD-like helicases superfamily Aflv_2065 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_2095 SM00984 UDP binding domain Aflv_2108 SM00116 Domain in cystathionine beta-synthase and other proteins. Aflv_2108 SM00924 MgtE intracellular N domain Aflv_2115 SM00954 Region found in RelA / SpoT proteins Aflv_2117 SM01118 Aflv_2117 Aflv_2126 SM00155 Phospholipase D. Active site motifs. Aflv_2129 SM00382 ATPases associated with a variety of cellular activities Aflv_2130 SM00382 ATPases associated with a variety of cellular activities Aflv_2139 SM00825 Beta-ketoacyl synthase Aflv_2144 SM00382 ATPases associated with a variety of cellular activities Aflv_2144 SM01086 C-terminal, D2-small domain, of ClpB protein Aflv_2147 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Aflv_2148 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Aflv_2152 SM00859 Semialdehyde dehydrogenase, NAD binding domain Aflv_2153 SM00100 Cyclic nucleotide-monophosphate binding domain Aflv_2153 SM00419 helix_turn_helix, cAMP Regulatory protein Aflv_2162 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_2162 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_2166 SM01018 B12 binding domain Aflv_2181 SM00382 ATPases associated with a variety of cellular activities Aflv_2186 SM00354 helix_turn _helix lactose operon repressor Aflv_2188 SM00642 Alpha-amylase domain Aflv_2192 SM00642 Alpha-amylase domain Aflv_2193 SM00342 helix_turn_helix, arabinose operon control protein Aflv_2197 SM00563 Phosphate acyltransferases Aflv_2204 SM00052 Putative diguanylate phosphodiesterase Aflv_2204 SM00091 PAS domain Aflv_2204 SM00267 diguanylate cyclase Aflv_2211 SM00857 Resolvase, N terminal domain Aflv_2218 SM00421 helix_turn_helix, Lux Regulon Aflv_2239 SM00530 Helix-turn-helix XRE-family like proteins Aflv_2244 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_2244 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_2245 SM00530 Helix-turn-helix XRE-family like proteins Aflv_2246 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_2247 SM00421 helix_turn_helix, Lux Regulon Aflv_2248 SM00052 Putative diguanylate phosphodiesterase Aflv_2249 SM00052 Putative diguanylate phosphodiesterase Aflv_2249 SM00091 PAS domain Aflv_2249 SM00267 diguanylate cyclase Aflv_2250 SM00382 ATPases associated with a variety of cellular activities Aflv_2262 SM00479 Aflv_2262 Aflv_2263 SM00100 Cyclic nucleotide-monophosphate binding domain Aflv_2263 SM00116 Domain in cystathionine beta-synthase and other proteins. Aflv_2269 SM00849 Metallo-beta-lactamase superfamily Aflv_2271 SM00642 Alpha-amylase domain Aflv_2275 SM00354 helix_turn _helix lactose operon repressor Aflv_2282 SM00450 Rhodanese Homology Domain Aflv_2285 SM00382 ATPases associated with a variety of cellular activities Aflv_2290 SM00347 helix_turn_helix multiple antibiotic resistance protein Aflv_2296 SM00729 Elongator protein 3, MiaB family, Radical SAM Aflv_2303 SM00382 ATPases associated with a variety of cellular activities Aflv_2307 SM00382 ATPases associated with a variety of cellular activities Aflv_2309 SM00062 Bacterial periplasmic substrate-binding proteins Aflv_2309 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Aflv_2310 SM00116 Domain in cystathionine beta-synthase and other proteins. Aflv_2310 SM01091 Transporter associated domain Aflv_2318 SM00382 ATPases associated with a variety of cellular activities Aflv_2321 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Aflv_2324 SM00642 Alpha-amylase domain Aflv_2326 SM00347 helix_turn_helix multiple antibiotic resistance protein Aflv_2328 SM00244 prohibitin homologues Aflv_2329 SM00244 prohibitin homologues Aflv_2334 SM00116 Domain in cystathionine beta-synthase and other proteins. Aflv_2340 SM00116 Domain in cystathionine beta-synthase and other proteins. Aflv_2340 SM01091 Transporter associated domain Aflv_2342 SM00450 Rhodanese Homology Domain Aflv_2342 SM00849 Metallo-beta-lactamase superfamily Aflv_2347 SM00450 Rhodanese Homology Domain Aflv_2348 SM00450 Rhodanese Homology Domain Aflv_2350 SM00763 PrkA AAA domain Aflv_2354 SM00567 E-Z type HEAT repeats Aflv_2355 SM00873 B3/4 domain Aflv_2356 SM00354 helix_turn _helix lactose operon repressor Aflv_2364 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_2365 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Aflv_2366 SM00116 Domain in cystathionine beta-synthase and other proteins. Aflv_2366 SM01091 Transporter associated domain Aflv_2367 SM00422 helix_turn_helix, mercury resistance Aflv_2370 SM00382 ATPases associated with a variety of cellular activities Aflv_2374 SM00530 Helix-turn-helix XRE-family like proteins Aflv_2388 SM00316 Ribosomal protein S1-like RNA-binding domain Aflv_2389 SM00530 Helix-turn-helix XRE-family like proteins Aflv_2391 SM00344 helix_turn_helix ASNC type Aflv_2425 SM00729 Elongator protein 3, MiaB family, Radical SAM Aflv_2441 SM00729 Elongator protein 3, MiaB family, Radical SAM Aflv_2453 SM00382 ATPases associated with a variety of cellular activities Aflv_2464 SM00382 ATPases associated with a variety of cellular activities Aflv_2468 SM00382 ATPases associated with a variety of cellular activities Aflv_2468 SM00930 Aflv_2468 Aflv_2472 SM00421 helix_turn_helix, Lux Regulon Aflv_2476 SM00493 Aflv_2476 Aflv_2494 SM00382 ATPases associated with a variety of cellular activities Aflv_2498 SM00316 Ribosomal protein S1-like RNA-binding domain Aflv_2498 SM00357 Cold shock protein domain Aflv_2498 SM00955 Aflv_2498 Aflv_2512 SM00060 Fibronectin type 3 domain Aflv_2514 SM01192 Aflv_2514 Aflv_2514 SM01193 Aflv_2514 Aflv_2518 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Aflv_2529 SM00028 Tetratricopeptide repeats Aflv_2546 SM00382 ATPases associated with a variety of cellular activities Aflv_2547 SM00487 DEAD-like helicases superfamily Aflv_2547 SM00490 helicase superfamily c-terminal domain Aflv_2549 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Aflv_2551 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Aflv_2551 SM00245 tail specific protease Aflv_2559 SM00382 ATPases associated with a variety of cellular activities Aflv_2562 SM00937 Aflv_2562 Aflv_2563 SM00957 SecA DEAD-like domain Aflv_2563 SM00958 SecA preprotein cross-linking domain Aflv_2566 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_2572 SM00028 Tetratricopeptide repeats Aflv_2575 SM00028 Tetratricopeptide repeats Aflv_2594 SM00487 DEAD-like helicases superfamily Aflv_2594 SM00490 helicase superfamily c-terminal domain Aflv_2598 SM00421 helix_turn_helix, Lux Regulon Aflv_2598 SM00448 cheY-homologous receiver domain Aflv_2599 SM00387 Histidine kinase-like ATPases Aflv_2605 SM00287 Bacterial SH3 domain homologues Aflv_2605 SM00646 Aflv_2605 Aflv_2609 SM00060 Fibronectin type 3 domain Aflv_2609 SM00632 Aflv_2609 Aflv_2609 SM00642 Alpha-amylase domain Aflv_2609 SM01065 Starch binding domain Aflv_2613 SM00382 ATPases associated with a variety of cellular activities Aflv_2620 SM00387 Histidine kinase-like ATPases Aflv_2621 SM00421 helix_turn_helix, Lux Regulon Aflv_2621 SM00448 cheY-homologous receiver domain Aflv_2632 SM00382 ATPases associated with a variety of cellular activities Aflv_2639 SM00957 SecA DEAD-like domain Aflv_2639 SM00958 SecA preprotein cross-linking domain Aflv_2642 SM00530 Helix-turn-helix XRE-family like proteins Aflv_2651 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_2651 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_2658 SM00316 Ribosomal protein S1-like RNA-binding domain Aflv_2664 SM00487 DEAD-like helicases superfamily Aflv_2664 SM00490 helicase superfamily c-terminal domain Aflv_2667 SM00984 UDP binding domain Aflv_2670 SM00382 ATPases associated with a variety of cellular activities Aflv_2673 SM00354 helix_turn _helix lactose operon repressor Aflv_2702 SM00382 ATPases associated with a variety of cellular activities Aflv_2716 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Aflv_2716 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_2717 SM00226 Low molecular weight phosphatase family Aflv_2722 SM00937 Aflv_2722 Aflv_2725 SM00357 Cold shock protein domain Aflv_2725 SM00382 ATPases associated with a variety of cellular activities Aflv_2725 SM00959 Rho termination factor, N-terminal domain Aflv_2730 SM00448 cheY-homologous receiver domain Aflv_2741 SM00155 Phospholipase D. Active site motifs. Aflv_2742 SM00836 DALR anticodon binding domain Aflv_2742 SM01016 Arginyl tRNA synthetase N terminal dom Aflv_2745 SM00857 Resolvase, N terminal domain Aflv_2756 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Aflv_2767 SM00642 Alpha-amylase domain Aflv_2770 SM00986 Uracil DNA glycosylase superfamily Aflv_2770 SM00987 UreE urease accessory protein, C-terminal domain Aflv_2780 SM01133 Aflv_2780 Aflv_2783 SM00640 Glycosyl hydrolases family 32 Aflv_2786 SM01061 CAT RNA binding domain Aflv_2789 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Aflv_2789 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Aflv_2790 SM00382 ATPases associated with a variety of cellular activities Aflv_2792 SM00062 Bacterial periplasmic substrate-binding proteins Aflv_2792 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Aflv_2799 SM00382 ATPases associated with a variety of cellular activities Aflv_2808 SM00387 Histidine kinase-like ATPases Aflv_2809 SM00421 helix_turn_helix, Lux Regulon Aflv_2809 SM00448 cheY-homologous receiver domain Aflv_2810 SM00382 ATPases associated with a variety of cellular activities Aflv_2821 SM00382 ATPases associated with a variety of cellular activities Aflv_2827 SM00382 ATPases associated with a variety of cellular activities Aflv_2834 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Aflv_2835 SM00849 Metallo-beta-lactamase superfamily Aflv_2839 SM00091 PAS domain Aflv_2839 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Aflv_2839 SM00387 Histidine kinase-like ATPases Aflv_2839 SM00388 His Kinase A (phosphoacceptor) domain Aflv_2840 SM00448 cheY-homologous receiver domain Aflv_2840 SM00862 Transcriptional regulatory protein, C terminal Aflv_2841 SM00788 Adenylosuccinate synthetase Aflv_2844 SM00267 diguanylate cyclase Aflv_2854 SM00470 ParB-like nuclease domain Aflv_2856 SM00470 ParB-like nuclease domain Aflv_2858 SM01228 Aflv_2858 Aflv_2860 SM00393 Putative single-stranded nucleic acids-binding domain Aflv_2860 SM01245 Aflv_2860