locus-tag class description AFK25_00005 PF11638 DnaA N-terminal domain AFK25_00005 PF00308 Bacterial dnaA protein AFK25_00005 PF08299 Bacterial dnaA protein helix-turn-helix AFK25_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AFK25_00010 PF02767 DNA polymerase III beta subunit, central domain AFK25_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AFK25_00020 PF02463 RecF/RecN/SMC N terminal domain AFK25_00025 PF00986 DNA gyrase B subunit, carboxyl terminus AFK25_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_00025 PF01751 Toprim domain AFK25_00025 PF00204 DNA gyrase B AFK25_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller AFK25_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A AFK25_00035 PF00072 Response regulator receiver domain AFK25_00065 PF14175 YaaC-like Protein AFK25_00070 PF00571 CBS domain AFK25_00070 PF00478 IMP dehydrogenase / GMP reductase domain AFK25_00075 PF00768 D-alanyl-D-alanine carboxypeptidase AFK25_00075 PF07943 Penicillin-binding protein 5, C-terminal domain AFK25_00080 PF01680 SOR/SNZ family AFK25_00085 PF01174 SNO glutamine amidotransferase family AFK25_00095 PF02403 Seryl-tRNA synthetase N-terminal domain AFK25_00095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFK25_00105 PF01712 Deoxynucleoside kinase AFK25_00110 PF01712 Deoxynucleoside kinase AFK25_00115 PF14437 MafB19-like deaminase AFK25_00120 PF12169 DNA polymerase III subunits gamma and tau domain III AFK25_00125 PF02575 YbaB/EbfC DNA-binding family AFK25_00130 PF13662 Toprim domain AFK25_00130 PF02132 RecR protein AFK25_00135 PF10704 Protein of unknown function (DUF2508) AFK25_00170 PF10764 Inhibitor of sigma-G Gin AFK25_00175 PF01276 Orn/Lys/Arg decarboxylase, major domain AFK25_00175 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AFK25_00180 PF02223 Thymidylate kinase AFK25_00185 PF09115 DNA polymerase III, delta subunit, C terminal AFK25_00190 PF04468 PSP1 C-terminal conserved region AFK25_00195 PF06156 Initiation control protein YabA AFK25_00200 PF05175 Methyltransferase small domain AFK25_00205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFK25_00210 PF18277 AbrB C-terminal domain AFK25_00210 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AFK25_00215 PF01588 Putative tRNA binding domain AFK25_00215 PF08264 Anticodon-binding domain of tRNA AFK25_00215 PF09334 tRNA synthetases class I (M) AFK25_00220 PF01026 TatD related DNase AFK25_00225 PF06725 3D domain AFK25_00225 PF03990 G5-linked-Ubiquitin-like domain AFK25_00225 PF07501 G5 domain AFK25_00230 PF13662 Toprim domain AFK25_00230 PF13331 Domain of unknown function (DUF4093) AFK25_00235 PF00398 Ribosomal RNA adenine dimethylase AFK25_00240 PF05582 YabG peptidase U57 AFK25_00245 PF06257 Biofilm formation stimulator VEG AFK25_00250 PF08544 GHMP kinases C terminal AFK25_00250 PF00288 GHMP kinases N terminal domain AFK25_00255 PF00156 Phosphoribosyl transferase domain AFK25_00255 PF09182 Bacterial purine repressor, N-terminal AFK25_00260 PF01042 Endoribonuclease L-PSP AFK25_00265 PF04026 SpoVG AFK25_00270 PF00483 Nucleotidyl transferase AFK25_00270 PF00132 Bacterial transferase hexapeptide (six repeats) AFK25_00275 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFK25_00275 PF14572 Phosphoribosyl synthetase-associated domain AFK25_00280 PF14693 Ribosomal protein TL5, C-terminal domain AFK25_00280 PF01386 Ribosomal L25p family AFK25_00285 PF01195 Peptidyl-tRNA hydrolase AFK25_00290 PF10955 Protein of unknown function (DUF2757) AFK25_00295 PF02559 CarD-like/TRCF domain AFK25_00295 PF17757 UvrB interaction domain AFK25_00295 PF00270 DEAD/DEAH box helicase AFK25_00295 PF00271 Helicase conserved C-terminal domain AFK25_00295 PF03461 TRCF domain AFK25_00300 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AFK25_00300 PF15714 Stage V sporulation protein T C-terminal, transcription factor AFK25_00305 PF01943 Polysaccharide biosynthesis protein AFK25_00305 PF14667 Polysaccharide biosynthesis C-terminal domain AFK25_00310 PF03819 MazG nucleotide pyrophosphohydrolase domain AFK25_00310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFK25_00315 PF01479 S4 domain AFK25_00320 PF07873 YabP family AFK25_00325 PF09578 Spore cortex protein YabQ (Spore_YabQ) AFK25_00330 PF04977 Septum formation initiator AFK25_00335 PF00575 S1 RNA binding domain AFK25_00350 PF07228 Stage II sporulation protein E (SpoIIE) AFK25_00355 PF00092 von Willebrand factor type A domain AFK25_00360 PF00069 Protein kinase domain AFK25_00365 PF09179 TilS substrate binding domain AFK25_00365 PF11734 TilS substrate C-terminal domain AFK25_00365 PF01171 PP-loop family AFK25_00375 PF00004 ATPase family associated with various cellular activities (AAA) AFK25_00375 PF01434 Peptidase family M41 AFK25_00375 PF06480 FtsH Extracellular AFK25_00375 PF17862 AAA+ lid domain AFK25_00380 PF03309 Type III pantothenate kinase AFK25_00385 PF01430 Hsp33 protein AFK25_00390 PF00291 Pyridoxal-phosphate dependent enzyme AFK25_00395 PF00425 chorismate binding enzyme AFK25_00395 PF04715 Anthranilate synthase component I, N terminal region AFK25_00400 PF00117 Glutamine amidotransferase class-I AFK25_00405 PF01063 Amino-transferase class IV AFK25_00410 PF00809 Pterin binding enzyme AFK25_00415 PF02152 Dihydroneopterin aldolase AFK25_00420 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AFK25_00425 PF01207 Dihydrouridine synthase (Dus) AFK25_00430 PF00152 tRNA synthetases class II (D, K and N) AFK25_00430 PF01336 OB-fold nucleic acid binding domain AFK25_00450 PF17727 CtsR C-terminal dimerization domain AFK25_00450 PF05848 CtsR N-terminal HTH domain AFK25_00455 PF02151 UvrB/uvrC motif AFK25_00460 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain AFK25_00465 PF10431 C-terminal, D2-small domain, of ClpB protein AFK25_00465 PF02861 Clp amino terminal domain, pathogenicity island component AFK25_00465 PF17871 AAA lid domain AFK25_00465 PF07724 AAA domain (Cdc48 subfamily) AFK25_00465 PF00004 ATPase family associated with various cellular activities (AAA) AFK25_00470 PF18073 Rubredoxin metal binding domain AFK25_00480 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFK25_00485 PF02542 YgbB family AFK25_00490 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFK25_00495 PF06426 Serine acetyltransferase, N-terminal AFK25_00495 PF00132 Bacterial transferase hexapeptide (six repeats) AFK25_00500 PF01406 tRNA synthetases class I (C) catalytic domain AFK25_00500 PF09190 DALR domain AFK25_00505 PF00636 Ribonuclease III domain AFK25_00510 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFK25_00510 PF00588 SpoU rRNA Methylase family AFK25_00515 PF05991 YacP-like NYN domain AFK25_00520 PF08281 Sigma-70, region 4 AFK25_00520 PF04542 Sigma-70 region 2 AFK25_00525 PF00471 Ribosomal protein L33 AFK25_00530 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AFK25_00535 PF00467 KOW motif AFK25_00535 PF02357 Transcription termination factor nusG AFK25_00540 PF00298 Ribosomal protein L11, RNA binding domain AFK25_00540 PF03946 Ribosomal protein L11, N-terminal domain AFK25_00545 PF00687 Ribosomal protein L1p/L10e family AFK25_00550 PF00466 Ribosomal protein L10 AFK25_00555 PF00542 Ribosomal protein L7/L12 C-terminal domain AFK25_00555 PF16320 Ribosomal protein L7/L12 dimerisation domain AFK25_00560 PF05175 Methyltransferase small domain AFK25_00565 PF04560 RNA polymerase Rpb2, domain 7 AFK25_00565 PF00562 RNA polymerase Rpb2, domain 6 AFK25_00565 PF04563 RNA polymerase beta subunit AFK25_00565 PF10385 RNA polymerase beta subunit external 1 domain AFK25_00565 PF04565 RNA polymerase Rpb2, domain 3 AFK25_00565 PF04561 RNA polymerase Rpb2, domain 2 AFK25_00570 PF05000 RNA polymerase Rpb1, domain 4 AFK25_00570 PF04983 RNA polymerase Rpb1, domain 3 AFK25_00570 PF00623 RNA polymerase Rpb1, domain 2 AFK25_00570 PF04997 RNA polymerase Rpb1, domain 1 AFK25_00570 PF04998 RNA polymerase Rpb1, domain 5 AFK25_00575 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AFK25_00580 PF00164 Ribosomal protein S12/S23 AFK25_00585 PF00177 Ribosomal protein S7p/S5e AFK25_00590 PF03144 Elongation factor Tu domain 2 AFK25_00590 PF00009 Elongation factor Tu GTP binding domain AFK25_00590 PF00679 Elongation factor G C-terminus AFK25_00590 PF14492 Elongation Factor G, domain II AFK25_00590 PF03764 Elongation factor G, domain IV AFK25_00595 PF03143 Elongation factor Tu C-terminal domain AFK25_00595 PF03144 Elongation factor Tu domain 2 AFK25_00595 PF00009 Elongation factor Tu GTP binding domain AFK25_00600 PF00338 Ribosomal protein S10p/S20e AFK25_00605 PF00297 Ribosomal protein L3 AFK25_00610 PF00573 Ribosomal protein L4/L1 family AFK25_00615 PF00276 Ribosomal protein L23 AFK25_00620 PF00181 Ribosomal Proteins L2, RNA binding domain AFK25_00620 PF03947 Ribosomal Proteins L2, C-terminal domain AFK25_00625 PF00203 Ribosomal protein S19 AFK25_00630 PF00237 Ribosomal protein L22p/L17e AFK25_00635 PF00189 Ribosomal protein S3, C-terminal domain AFK25_00635 PF07650 KH domain AFK25_00640 PF00252 Ribosomal protein L16p/L10e AFK25_00645 PF00831 Ribosomal L29 protein AFK25_00650 PF00366 Ribosomal protein S17 AFK25_00655 PF00238 Ribosomal protein L14p/L23e AFK25_00660 PF00467 KOW motif AFK25_00660 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AFK25_00665 PF00673 ribosomal L5P family C-terminus AFK25_00665 PF00281 Ribosomal protein L5 AFK25_00670 PF00253 Ribosomal protein S14p/S29e AFK25_00675 PF00410 Ribosomal protein S8 AFK25_00680 PF00347 Ribosomal protein L6 AFK25_00685 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AFK25_00690 PF00333 Ribosomal protein S5, N-terminal domain AFK25_00690 PF03719 Ribosomal protein S5, C-terminal domain AFK25_00695 PF00327 Ribosomal protein L30p/L7e AFK25_00700 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AFK25_00705 PF00344 SecY translocase AFK25_00710 PF05191 Adenylate kinase, active site lid AFK25_00715 PF00557 Metallopeptidase family M24 AFK25_00720 PF01176 Translation initiation factor 1A / IF-1 AFK25_00725 PF00444 Ribosomal protein L36 AFK25_00730 PF00416 Ribosomal protein S13/S18 AFK25_00735 PF00411 Ribosomal protein S11 AFK25_00740 PF01000 RNA polymerase Rpb3/RpoA insert domain AFK25_00740 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFK25_00740 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFK25_00745 PF01196 Ribosomal protein L17 AFK25_00750 PF00005 ABC transporter AFK25_00755 PF00005 ABC transporter AFK25_00760 PF02361 Cobalt transport protein AFK25_00765 PF01416 tRNA pseudouridine synthase AFK25_00770 PF00572 Ribosomal protein L13 AFK25_00775 PF00380 Ribosomal protein S9/S16 AFK25_00785 PF01520 N-acetylmuramoyl-L-alanine amidase AFK25_00790 PF10609 NUBPL iron-transfer P-loop NTPase AFK25_00795 PF17898 Spore germination GerD central core domain AFK25_00800 PF14089 KinB-signalling pathway activation in sporulation AFK25_00805 PF01522 Polysaccharide deacetylase AFK25_00875 PF00491 Arginase family AFK25_00880 PF08281 Sigma-70, region 4 AFK25_00880 PF04542 Sigma-70 region 2 AFK25_00885 PF13490 Putative zinc-finger AFK25_00890 PF02457 DisA bacterial checkpoint controller nucleotide-binding AFK25_00895 PF07949 YbbR-like protein AFK25_00900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFK25_00900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFK25_00900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFK25_00900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFK25_00905 PF01380 SIS domain AFK25_00925 PF01717 Cobalamin-independent synthase, Catalytic domain AFK25_00925 PF08267 Cobalamin-independent synthase, N-terminal domain AFK25_00930 PF00892 EamA-like transporter family AFK25_00935 PF02311 AraC-like ligand binding domain AFK25_00935 PF12833 Helix-turn-helix domain AFK25_00955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_00955 PF07730 Histidine kinase AFK25_00960 PF00072 Response regulator receiver domain AFK25_00960 PF00196 Bacterial regulatory proteins, luxR family AFK25_00975 PF07739 TipAS antibiotic-recognition domain AFK25_00975 PF13411 MerR HTH family regulatory protein AFK25_00990 PF02554 Carbon starvation protein CstA AFK25_00990 PF13722 5TM C-terminal transporter carbon starvation CstA AFK25_01005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFK25_01005 PF02770 Acyl-CoA dehydrogenase, middle domain AFK25_01005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFK25_01010 PF00501 AMP-binding enzyme AFK25_01010 PF13193 AMP-binding enzyme C-terminal domain AFK25_01015 PF02785 Biotin carboxylase C-terminal domain AFK25_01015 PF00289 Biotin carboxylase, N-terminal domain AFK25_01015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFK25_01020 PF00364 Biotin-requiring enzyme AFK25_01025 PF00682 HMGL-like AFK25_01030 PF00378 Enoyl-CoA hydratase/isomerase AFK25_01035 PF01039 Carboxyl transferase domain AFK25_01040 PF01522 Polysaccharide deacetylase AFK25_01040 PF13739 Deacetylase PdaC AFK25_01040 PF11738 Protein of unknown function (DUF3298) AFK25_01050 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AFK25_01060 PF03323 Bacillus/Clostridium GerA spore germination protein AFK25_01065 PF03845 Spore germination protein AFK25_01070 PF07478 D-ala D-ala ligase C-terminus AFK25_01070 PF01820 D-ala D-ala ligase N-terminus AFK25_01075 PF02875 Mur ligase family, glutamate ligase domain AFK25_01075 PF01225 Mur ligase family, catalytic domain AFK25_01075 PF08245 Mur ligase middle domain AFK25_01080 PF00271 Helicase conserved C-terminal domain AFK25_01080 PF00270 DEAD/DEAH box helicase AFK25_01085 PF01648 4'-phosphopantetheinyl transferase superfamily AFK25_01095 PF01168 Alanine racemase, N-terminal domain AFK25_01095 PF00842 Alanine racemase, C-terminal domain AFK25_01100 PF01402 Ribbon-helix-helix protein, copG family AFK25_01105 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AFK25_01110 PF17674 HHH domain AFK25_01110 PF00575 S1 RNA binding domain AFK25_01110 PF09371 Tex-like protein N-terminal domain AFK25_01110 PF16921 Tex protein YqgF-like domain AFK25_01115 PF10263 SprT-like family AFK25_01155 PF05698 Bacterial trigger factor protein (TF) C-terminus AFK25_01155 PF05697 Bacterial trigger factor protein (TF) AFK25_01200 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AFK25_01205 PF00814 Glycoprotease family AFK25_01210 PF00583 Acetyltransferase (GNAT) family AFK25_01215 PF00814 Glycoprotease family AFK25_01220 PF12848 ABC transporter AFK25_01220 PF00005 ABC transporter AFK25_01220 PF16326 ABC transporter C-terminal domain AFK25_01225 PF06971 Putative DNA-binding protein N-terminus AFK25_01225 PF02629 CoA binding domain AFK25_01235 PF02517 CPBP intramembrane metalloprotease AFK25_01240 PF00166 Chaperonin 10 Kd subunit AFK25_01245 PF00118 TCP-1/cpn60 chaperonin family AFK25_01255 PF02540 NAD synthase AFK25_01255 PF00958 GMP synthase C terminal domain AFK25_01255 PF00117 Glutamine amidotransferase class-I AFK25_01260 PF00860 Permease family AFK25_01285 PF00731 AIR carboxylase AFK25_01290 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AFK25_01290 PF02222 ATP-grasp domain AFK25_01295 PF00206 Lyase AFK25_01295 PF10397 Adenylosuccinate lyase C-terminus AFK25_01300 PF01259 SAICAR synthetase AFK25_01305 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AFK25_01315 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AFK25_01315 PF00586 AIR synthase related protein, N-terminal domain AFK25_01315 PF02769 AIR synthase related protein, C-terminal domain AFK25_01320 PF00156 Phosphoribosyl transferase domain AFK25_01325 PF02769 AIR synthase related protein, C-terminal domain AFK25_01325 PF00586 AIR synthase related protein, N-terminal domain AFK25_01330 PF00551 Formyl transferase AFK25_01335 PF02142 MGS-like domain AFK25_01335 PF01808 AICARFT/IMPCHase bienzyme AFK25_01340 PF02843 Phosphoribosylglycinamide synthetase, C domain AFK25_01340 PF02844 Phosphoribosylglycinamide synthetase, N domain AFK25_01340 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFK25_01350 PF13382 Adenine deaminase C-terminal domain AFK25_01350 PF01979 Amidohydrolase family AFK25_01355 PF11258 Protein of unknown function (DUF3048) N-terminal domain AFK25_01355 PF17479 Protein of unknown function (DUF3048) C-terminal domain AFK25_01360 PF01371 Trp repressor protein AFK25_01365 PF01884 PcrB family AFK25_01370 PF13361 UvrD-like helicase C-terminal domain AFK25_01370 PF00580 UvrD/REP helicase N-terminal domain AFK25_01375 PF03120 NAD-dependent DNA ligase OB-fold domain AFK25_01375 PF01653 NAD-dependent DNA ligase adenylation domain AFK25_01375 PF00533 BRCA1 C Terminus (BRCT) domain AFK25_01375 PF12826 Helix-hairpin-helix motif AFK25_01375 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFK25_01380 PF07537 CamS sex pheromone cAM373 precursor AFK25_01385 PF00171 Aldehyde dehydrogenase family AFK25_01395 PF01979 Amidohydrolase family AFK25_01395 PF13382 Adenine deaminase C-terminal domain AFK25_01400 PF01235 Sodium:alanine symporter family AFK25_01405 PF02686 Glu-tRNAGln amidotransferase C subunit AFK25_01410 PF01425 Amidase AFK25_01415 PF02934 GatB/GatE catalytic domain AFK25_01415 PF02637 GatB domain AFK25_01425 PF01022 Bacterial regulatory protein, arsR family AFK25_01430 PF00171 Aldehyde dehydrogenase family AFK25_01435 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AFK25_01440 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFK25_01445 PF00510 Cytochrome c oxidase subunit III AFK25_01450 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AFK25_01455 PF00072 Response regulator receiver domain AFK25_01465 PF04012 PspA/IM30 family AFK25_01475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_01475 PF18698 Histidine kinase sensor domain AFK25_01475 PF00512 His Kinase A (phospho-acceptor) domain AFK25_01475 PF00672 HAMP domain AFK25_01475 PF00989 PAS fold AFK25_01480 PF00486 Transcriptional regulatory protein, C terminal AFK25_01480 PF00072 Response regulator receiver domain AFK25_01500 PF00781 Diacylglycerol kinase catalytic domain AFK25_01505 PF05958 tRNA (Uracil-5-)-methyltransferase AFK25_01505 PF01938 TRAM domain AFK25_01505 PF02475 Met-10+ like-protein AFK25_01510 PF07508 Recombinase AFK25_01510 PF13408 Recombinase zinc beta ribbon domain AFK25_01535 PF00665 Integrase core domain AFK25_01535 PF02796 Helix-turn-helix domain of resolvase AFK25_01540 PF01695 IstB-like ATP binding protein AFK25_01560 PF12704 MacB-like periplasmic core domain AFK25_01560 PF00005 ABC transporter AFK25_01560 PF02687 FtsX-like permease family AFK25_01575 PF00005 ABC transporter AFK25_01575 PF02687 FtsX-like permease family AFK25_01575 PF12704 MacB-like periplasmic core domain AFK25_01580 PF00072 Response regulator receiver domain AFK25_01580 PF00486 Transcriptional regulatory protein, C terminal AFK25_01585 PF00672 HAMP domain AFK25_01585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_01585 PF00512 His Kinase A (phospho-acceptor) domain AFK25_01585 PF13426 PAS domain AFK25_01590 PF07690 Major Facilitator Superfamily AFK25_01610 PF08241 Methyltransferase domain AFK25_01615 PF00005 ABC transporter AFK25_01615 PF13732 Domain of unknown function (DUF4162) AFK25_01620 PF01061 ABC-2 type transporter AFK25_01625 PF00486 Transcriptional regulatory protein, C terminal AFK25_01625 PF00072 Response regulator receiver domain AFK25_01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_01630 PF16736 Single Cache-like AFK25_01630 PF00989 PAS fold AFK25_01630 PF00512 His Kinase A (phospho-acceptor) domain AFK25_01635 PF04542 Sigma-70 region 2 AFK25_01635 PF08281 Sigma-70, region 4 AFK25_01650 PF02898 Nitric oxide synthase, oxygenase domain AFK25_01655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_01655 PF00672 HAMP domain AFK25_01655 PF02743 Cache domain AFK25_01660 PF00072 Response regulator receiver domain AFK25_01660 PF01966 HD domain AFK25_01665 PF00990 Diguanylate cyclase, GGDEF domain AFK25_01665 PF00563 EAL domain AFK25_01665 PF03707 Bacterial signalling protein N terminal repeat AFK25_01670 PF01476 LysM domain AFK25_01670 PF00877 NlpC/P60 family AFK25_01675 PF03741 Integral membrane protein TerC family AFK25_01680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFK25_01680 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_01695 PF07670 Nucleoside recognition AFK25_01695 PF07664 Ferrous iron transport protein B C terminus AFK25_01695 PF02421 Ferrous iron transport protein B AFK25_01695 PF17910 FeoB cytosolic helical domain AFK25_01705 PF00708 Acylphosphatase AFK25_01720 PF01903 CbiX AFK25_01725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFK25_01735 PF01747 ATP-sulfurylase AFK25_01735 PF14306 PUA-like domain AFK25_01740 PF01384 Phosphate transporter family AFK25_01745 PF01507 Phosphoadenosine phosphosulfate reductase family AFK25_01755 PF06569 Protein of unknown function (DUF1128) AFK25_01760 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFK25_01770 PF03631 Virulence factor BrkB AFK25_01780 PF07690 Major Facilitator Superfamily AFK25_01785 PF01699 Sodium/calcium exchanger protein AFK25_01790 PF14167 YfkD-like protein AFK25_01795 PF04055 Radical SAM superfamily AFK25_01795 PF08756 YfkB-like domain AFK25_01805 PF05681 Fumarate hydratase (Fumerase) AFK25_01805 PF05683 Fumarase C-terminus AFK25_01810 PF01522 Polysaccharide deacetylase AFK25_01815 PF00730 HhH-GPD superfamily base excision DNA repair protein AFK25_01820 PF01938 TRAM domain AFK25_01820 PF05958 tRNA (Uracil-5-)-methyltransferase AFK25_01835 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AFK25_01850 PF00107 Zinc-binding dehydrogenase AFK25_01850 PF08240 Alcohol dehydrogenase GroES-like domain AFK25_01855 PF12729 Four helix bundle sensory module for signal transduction AFK25_01855 PF00672 HAMP domain AFK25_01855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_01870 PF01979 Amidohydrolase family AFK25_01875 PF01370 NAD dependent epimerase/dehydratase family AFK25_01875 PF08338 Domain of unknown function (DUF1731) AFK25_01880 PF02631 RecX family AFK25_01885 PF00106 short chain dehydrogenase AFK25_01890 PF02652 L-lactate permease AFK25_01895 PF08838 Protein of unknown function (DUF1811) AFK25_01900 PF08176 Small acid-soluble spore protein K family AFK25_01905 PF04307 LexA-binding, inner membrane-associated putative hydrolase AFK25_01910 PF14815 NUDIX domain AFK25_01910 PF00730 HhH-GPD superfamily base excision DNA repair protein AFK25_01910 PF00633 Helix-hairpin-helix motif AFK25_01925 PF04167 Protein of unknown function (DUF402) AFK25_01930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFK25_01930 PF00005 ABC transporter AFK25_01935 PF00005 ABC transporter AFK25_01935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFK25_01940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFK25_01955 PF06081 Aromatic acid exporter family member 1 AFK25_01960 PF01493 GXGXG motif AFK25_01960 PF04898 Glutamate synthase central domain AFK25_01960 PF00310 Glutamine amidotransferases class-II AFK25_01960 PF01645 Conserved region in glutamate synthase AFK25_01965 PF00202 Aminotransferase class-III AFK25_01970 PF00005 ABC transporter AFK25_01985 PF07885 Ion channel AFK25_01990 PF00578 AhpC/TSA family AFK25_01995 PF01475 Ferric uptake regulator family AFK25_02000 PF11023 Zinc-ribbon containing domain AFK25_02005 PF14540 Nucleotidyltransferase-like AFK25_02005 PF18576 Helix-turn-helix domain AFK25_02145 PF01695 IstB-like ATP binding protein AFK25_02150 PF02796 Helix-turn-helix domain of resolvase AFK25_02150 PF00665 Integrase core domain AFK25_02200 PF08331 Domain of unknown function (DUF1730) AFK25_02205 PF12671 Putative amidase domain AFK25_02210 PF00588 SpoU rRNA Methylase family AFK25_02215 PF06798 PrkA serine protein kinase C-terminal domain AFK25_02215 PF08298 PrkA AAA domain AFK25_02220 PF04285 Protein of unknown function (DUF444) AFK25_02255 PF01381 Helix-turn-helix AFK25_02260 PF01381 Helix-turn-helix AFK25_02350 PF00589 Phage integrase family AFK25_02390 PF00574 Clp protease AFK25_02510 PF05105 Bacteriophage holin family AFK25_02515 PF01510 N-acetylmuramoyl-L-alanine amidase AFK25_02550 PF00581 Rhodanese-like domain AFK25_02555 PF01206 Sulfurtransferase TusA AFK25_02555 PF00581 Rhodanese-like domain AFK25_02560 PF13686 DsrE/DsrF/DrsH-like family AFK25_02565 PF01206 Sulfurtransferase TusA AFK25_02570 PF01925 Sulfite exporter TauE/SafE AFK25_02580 PF00753 Metallo-beta-lactamase superfamily AFK25_02580 PF00581 Rhodanese-like domain AFK25_02585 PF04298 Putative neutral zinc metallopeptidase AFK25_02590 PF03471 Transporter associated domain AFK25_02590 PF00571 CBS domain AFK25_02590 PF01595 Cyclin M transmembrane N-terminal domain AFK25_02595 PF01479 S4 domain AFK25_02595 PF00849 RNA pseudouridylate synthase AFK25_02600 PF17326 Family of unknown function (DUF5365) AFK25_02605 PF00085 Thioredoxin AFK25_02610 PF02600 Disulfide bond formation protein DsbB AFK25_02615 PF00571 CBS domain AFK25_02620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFK25_02620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFK25_02620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFK25_02620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFK25_02625 PF00106 short chain dehydrogenase AFK25_02630 PF14148 YhdB-like protein AFK25_02635 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFK25_02635 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFK25_02640 PF01145 SPFH domain / Band 7 family AFK25_02645 PF12221 Bacterial membrane protein N terminal AFK25_02645 PF01145 SPFH domain / Band 7 family AFK25_02650 PF04293 SpoVR like protein AFK25_02655 PF01047 MarR family AFK25_02660 PF07690 Major Facilitator Superfamily AFK25_02665 PF16657 Maltogenic Amylase, C-terminal domain AFK25_02665 PF00128 Alpha amylase, catalytic domain AFK25_02675 PF10672 S-adenosylmethionine-dependent methyltransferase AFK25_02675 PF17785 PUA-like domain AFK25_02680 PF03070 TENA/THI-4/PQQC family AFK25_02685 PF09819 ABC-type cobalt transport system, permease component AFK25_02690 PF00005 ABC transporter AFK25_02695 PF02361 Cobalt transport protein AFK25_02700 PF02581 Thiamine monophosphate synthase AFK25_02705 PF01266 FAD dependent oxidoreductase AFK25_02710 PF05690 Thiazole biosynthesis protein ThiG AFK25_02710 PF02597 ThiS family AFK25_02715 PF05690 Thiazole biosynthesis protein ThiG AFK25_02720 PF00899 ThiF family AFK25_02725 PF08543 Phosphomethylpyrimidine kinase AFK25_02730 PF01595 Cyclin M transmembrane N-terminal domain AFK25_02730 PF00571 CBS domain AFK25_02730 PF03471 Transporter associated domain AFK25_02735 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFK25_02740 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_02745 PF00005 ABC transporter AFK25_02750 PF00269 Small, acid-soluble spore proteins, alpha/beta type AFK25_02760 PF17912 MalK OB fold domain AFK25_02760 PF03459 TOBE domain AFK25_02760 PF00005 ABC transporter AFK25_02765 PF13556 PucR C-terminal helix-turn-helix domain AFK25_02775 PF04286 Protein of unknown function (DUF445) AFK25_02780 PF06133 Control of competence regulator ComK, YlbF/YmcA AFK25_02790 PF04055 Radical SAM superfamily AFK25_02795 PF14120 YhzD-like protein AFK25_02800 PF14147 Sporulation protein YhaL AFK25_02805 PF00266 Aminotransferase class-V AFK25_02810 PF17099 Tryptophan transporter TrpP AFK25_02820 PF01047 MarR family AFK25_02825 PF08963 Protein of unknown function (DUF1878) AFK25_02835 PF09680 Family of unknown function AFK25_02840 PF05698 Bacterial trigger factor protein (TF) C-terminus AFK25_02845 PF01230 HIT domain AFK25_02850 PF00005 ABC transporter AFK25_02855 PF05975 Bacterial ABC transporter protein EcsB AFK25_02860 PF07687 Peptidase dimerisation domain AFK25_02860 PF01546 Peptidase family M20/M25/M40 AFK25_02865 PF00581 Rhodanese-like domain AFK25_02870 PF03992 Antibiotic biosynthesis monooxygenase AFK25_02875 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFK25_02890 PF17932 Tetracyclin repressor-like, C-terminal domain AFK25_02890 PF00440 Bacterial regulatory proteins, tetR family AFK25_02900 PF00356 Bacterial regulatory proteins, lacI family AFK25_02905 PF01547 Bacterial extracellular solute-binding protein AFK25_02910 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_02910 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_02915 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_02925 PF12706 Beta-lactamase superfamily domain AFK25_02940 PF00474 Sodium:solute symporter family AFK25_02965 PF00501 AMP-binding enzyme AFK25_02965 PF13193 AMP-binding enzyme C-terminal domain AFK25_02975 PF02653 Branched-chain amino acid transport system / permease component AFK25_02980 PF00005 ABC transporter AFK25_02985 PF00990 Diguanylate cyclase, GGDEF domain AFK25_02985 PF00563 EAL domain AFK25_02985 PF03707 Bacterial signalling protein N terminal repeat AFK25_03000 PF00563 EAL domain AFK25_03000 PF08668 HDOD domain AFK25_03005 PF02630 SCO1/SenC AFK25_03010 PF16491 CAAX prenyl protease N-terminal, five membrane helices AFK25_03010 PF01435 Peptidase family M48 AFK25_03015 PF00463 Isocitrate lyase family AFK25_03020 PF06338 ComK protein AFK25_03025 PF09335 SNARE associated Golgi protein AFK25_03030 PF12705 PD-(D/E)XK nuclease superfamily AFK25_03030 PF13361 UvrD-like helicase C-terminal domain AFK25_03035 PF12705 PD-(D/E)XK nuclease superfamily AFK25_03035 PF13361 UvrD-like helicase C-terminal domain AFK25_03035 PF00580 UvrD/REP helicase N-terminal domain AFK25_03040 PF00149 Calcineurin-like phosphoesterase AFK25_03040 PF12320 Type 5 capsule protein repressor C-terminal domain AFK25_03045 PF13476 AAA domain AFK25_03070 PF10737 Spore germination protein GerPC AFK25_03075 PF10803 Spore germination GerPB AFK25_03080 PF10676 Spore germination protein gerPA/gerPF AFK25_03090 PF13193 AMP-binding enzyme C-terminal domain AFK25_03090 PF00501 AMP-binding enzyme AFK25_03095 PF04235 Protein of unknown function (DUF418) AFK25_03100 PF09388 Spo0E like sporulation regulatory protein AFK25_03105 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFK25_03110 PF00202 Aminotransferase class-III AFK25_03115 PF07457 Protein of unknown function (DUF1516) AFK25_03120 PF03707 Bacterial signalling protein N terminal repeat AFK25_03120 PF00563 EAL domain AFK25_03120 PF00990 Diguanylate cyclase, GGDEF domain AFK25_03130 PF00733 Asparagine synthase AFK25_03130 PF13537 Glutamine amidotransferase domain AFK25_03135 PF01593 Flavin containing amine oxidoreductase AFK25_03160 PF00535 Glycosyl transferase family 2 AFK25_03165 PF01593 Flavin containing amine oxidoreductase AFK25_03170 PF01554 MatE AFK25_03175 PF02311 AraC-like ligand binding domain AFK25_03175 PF12833 Helix-turn-helix domain AFK25_03180 PF02903 Alpha amylase, N-terminal ig-like domain AFK25_03180 PF00128 Alpha amylase, catalytic domain AFK25_03180 PF16657 Maltogenic Amylase, C-terminal domain AFK25_03185 PF13416 Bacterial extracellular solute-binding protein AFK25_03190 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_03195 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_03200 PF00128 Alpha amylase, catalytic domain AFK25_03200 PF03423 Carbohydrate binding domain (family 25) AFK25_03200 PF01373 Glycosyl hydrolase family 14 AFK25_03205 PF01055 Glycosyl hydrolases family 31 AFK25_03205 PF13802 Galactose mutarotase-like AFK25_03205 PF17137 Domain of unknown function (DUF5110) AFK25_03205 PF16338 Domain of unknown function (DUF4968) AFK25_03210 PF00356 Bacterial regulatory proteins, lacI family AFK25_03220 PF01891 Cobalt uptake substrate-specific transmembrane region AFK25_03225 PF02553 Cobalt transport protein component CbiN AFK25_03235 PF00005 ABC transporter AFK25_03240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFK25_03240 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFK25_03245 PF01903 CbiX AFK25_03250 PF02571 Precorrin-6x reductase CbiJ/CobK AFK25_03255 PF02570 Precorrin-8X methylmutase AFK25_03260 PF01888 CbiD AFK25_03265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFK25_03270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFK25_03275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFK25_03280 PF01890 Cobalamin synthesis G C-terminus AFK25_03280 PF11761 Cobalamin biosynthesis central region AFK25_03280 PF11760 Cobalamin synthesis G N-terminal AFK25_03285 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFK25_03285 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFK25_03290 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFK25_03290 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFK25_03295 PF02277 Phosphoribosyltransferase AFK25_03300 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFK25_03305 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AFK25_03305 PF12557 Cob(I)alamin adenosyltransferase N terminal AFK25_03310 PF02310 B12 binding domain AFK25_03310 PF02607 B12 binding domain AFK25_03310 PF02965 Vitamin B12 dependent methionine synthase, activation domain AFK25_03310 PF00809 Pterin binding enzyme AFK25_03310 PF02574 Homocysteine S-methyltransferase AFK25_03315 PF02574 Homocysteine S-methyltransferase AFK25_03315 PF02219 Methylenetetrahydrofolate reductase AFK25_03320 PF04461 Protein of unknown function (DUF520) AFK25_03330 PF02743 Cache domain AFK25_03330 PF00672 HAMP domain AFK25_03330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_03335 PF02645 Uncharacterised protein, DegV family COG1307 AFK25_03340 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AFK25_03340 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AFK25_03350 PF00326 Prolyl oligopeptidase family AFK25_03355 PF14256 YwiC-like protein AFK25_03360 PF00325 Bacterial regulatory proteins, crp family AFK25_03360 PF00027 Cyclic nucleotide-binding domain AFK25_03365 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFK25_03365 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFK25_03370 PF01960 ArgJ family AFK25_03375 PF00696 Amino acid kinase family AFK25_03380 PF00202 Aminotransferase class-III AFK25_03385 PF00117 Glutamine amidotransferase class-I AFK25_03385 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFK25_03390 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFK25_03390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFK25_03395 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFK25_03395 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFK25_03400 PF14168 YjzC-like protein AFK25_03405 PF00004 ATPase family associated with various cellular activities (AAA) AFK25_03405 PF07724 AAA domain (Cdc48 subfamily) AFK25_03405 PF17871 AAA lid domain AFK25_03405 PF02861 Clp amino terminal domain, pathogenicity island component AFK25_03405 PF10431 C-terminal, D2-small domain, of ClpB protein AFK25_03425 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFK25_03425 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFK25_03430 PF02801 Beta-ketoacyl synthase, C-terminal domain AFK25_03430 PF00109 Beta-ketoacyl synthase, N-terminal domain AFK25_03435 PF10026 Predicted Zn-dependent protease (DUF2268) AFK25_03445 PF12227 Protein of unknown function (DUF3603) AFK25_03450 PF00579 tRNA synthetases class I (W and Y) AFK25_03460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFK25_03465 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_03470 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_03470 PF12911 N-terminal TM domain of oligopeptide transport permease C AFK25_03475 PF00005 ABC transporter AFK25_03475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFK25_03480 PF00005 ABC transporter AFK25_03480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFK25_03490 PF03960 ArsC family AFK25_03495 PF13396 Phospholipase_D-nuclease N-terminal AFK25_03495 PF13091 PLD-like domain AFK25_03500 PF05389 Negative regulator of genetic competence (MecA) AFK25_03510 PF01432 Peptidase family M3 AFK25_03510 PF08439 Oligopeptidase F AFK25_03525 PF01152 Bacterial-like globin AFK25_03530 PF01464 Transglycosylase SLT domain AFK25_03535 PF01928 CYTH domain AFK25_03545 PF04607 Region found in RelA / SpoT proteins AFK25_03550 PF01513 ATP-NAD kinase AFK25_03555 PF00849 RNA pseudouridylate synthase AFK25_03560 PF00149 Calcineurin-like phosphoesterase AFK25_03575 PF01098 Cell cycle protein AFK25_03580 PF01769 Divalent cation transporter AFK25_03580 PF03448 MgtE intracellular N domain AFK25_03580 PF00571 CBS domain AFK25_03595 PF13439 Glycosyltransferase Family 4 AFK25_03595 PF00534 Glycosyl transferases group 1 AFK25_03600 PF01370 NAD dependent epimerase/dehydratase family AFK25_03605 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFK25_03605 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFK25_03605 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFK25_03615 PF07098 Protein of unknown function (DUF1360) AFK25_03655 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AFK25_03660 PF07451 Stage V sporulation protein AD (SpoVAD) AFK25_03665 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AFK25_03675 PF04239 Protein of unknown function (DUF421) AFK25_03685 PF00085 Thioredoxin AFK25_03695 PF14069 Stage VI sporulation protein F AFK25_03700 PF00580 UvrD/REP helicase N-terminal domain AFK25_03700 PF13361 UvrD-like helicase C-terminal domain AFK25_03715 PF01385 Probable transposase AFK25_03715 PF07282 Putative transposase DNA-binding domain AFK25_03715 PF12323 Helix-turn-helix domain AFK25_03720 PF04239 Protein of unknown function (DUF421) AFK25_03725 PF13673 Acetyltransferase (GNAT) domain AFK25_03735 PF00756 Putative esterase AFK25_03740 PF04608 Phosphatidylglycerophosphatase A AFK25_03745 PF01741 Large-conductance mechanosensitive channel, MscL AFK25_03750 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFK25_03755 PF07883 Cupin domain AFK25_03760 PF01053 Cys/Met metabolism PLP-dependent enzyme AFK25_03765 PF01053 Cys/Met metabolism PLP-dependent enzyme AFK25_03770 PF01966 HD domain AFK25_03785 PF00589 Phage integrase family AFK25_03785 PF02899 Phage integrase, N-terminal SAM-like domain AFK25_03880 PF00589 Phage integrase family AFK25_03880 PF14659 Phage integrase, N-terminal SAM-like domain AFK25_03890 PF07995 Glucose / Sorbosone dehydrogenase AFK25_03920 PF00872 Transposase, Mutator family AFK25_03930 PF12161 HsdM N-terminal domain AFK25_03930 PF02384 N-6 DNA Methylase AFK25_03945 PF11867 Domain of unknown function (DUF3387) AFK25_03945 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFK25_03945 PF18766 SWI2/SNF2 ATPase AFK25_03965 PF13411 MerR HTH family regulatory protein AFK25_03970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFK25_03970 PF00403 Heavy-metal-associated domain AFK25_03970 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_04000 PF13358 DDE superfamily endonuclease AFK25_04005 PF00293 NUDIX domain AFK25_04020 PF13358 DDE superfamily endonuclease AFK25_04030 PF00005 ABC transporter AFK25_04030 PF00664 ABC transporter transmembrane region AFK25_04035 PF00005 ABC transporter AFK25_04035 PF00664 ABC transporter transmembrane region AFK25_04040 PF05726 Pirin C-terminal cupin domain AFK25_04040 PF02678 Pirin AFK25_04050 PF01966 HD domain AFK25_04055 PF00005 ABC transporter AFK25_04055 PF16326 ABC transporter C-terminal domain AFK25_04055 PF12848 ABC transporter AFK25_04060 PF08712 Scaffold protein Nfu/NifU N terminal AFK25_04060 PF13769 Virulence factor AFK25_04070 PF01022 Bacterial regulatory protein, arsR family AFK25_04080 PF00465 Iron-containing alcohol dehydrogenase AFK25_04085 PF03180 NLPA lipoprotein AFK25_04090 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_04095 PF09383 NIL domain AFK25_04095 PF00005 ABC transporter AFK25_04105 PF01256 Carbohydrate kinase AFK25_04105 PF03853 YjeF-related protein N-terminus AFK25_04115 PF13276 HTH-like domain AFK25_04115 PF00665 Integrase core domain AFK25_04115 PF13333 Integrase core domain AFK25_04135 PF02954 Bacterial regulatory protein, Fis family AFK25_04135 PF00989 PAS fold AFK25_04135 PF00158 Sigma-54 interaction domain AFK25_04145 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AFK25_04150 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AFK25_04155 PF00892 EamA-like transporter family AFK25_04170 PF00069 Protein kinase domain AFK25_04175 PF01381 Helix-turn-helix AFK25_04180 PF00710 Asparaginase, N-terminal AFK25_04180 PF17763 Glutaminase/Asparaginase C-terminal domain AFK25_04185 PF00206 Lyase AFK25_04185 PF10415 Fumarase C C-terminus AFK25_04190 PF00390 Malic enzyme, N-terminal domain AFK25_04190 PF03949 Malic enzyme, NAD binding domain AFK25_04195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_04195 PF00512 His Kinase A (phospho-acceptor) domain AFK25_04195 PF00989 PAS fold AFK25_04205 PF01168 Alanine racemase, N-terminal domain AFK25_04210 PF02525 Flavodoxin-like fold AFK25_04215 PF08241 Methyltransferase domain AFK25_04225 PF00535 Glycosyl transferase family 2 AFK25_04230 PF07690 Major Facilitator Superfamily AFK25_04235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_04235 PF00512 His Kinase A (phospho-acceptor) domain AFK25_04240 PF13520 Amino acid permease AFK25_04245 PF03741 Integral membrane protein TerC family AFK25_04250 PF00210 Ferritin-like domain AFK25_04260 PF13183 4Fe-4S dicluster domain AFK25_04260 PF02754 Cysteine-rich domain AFK25_04265 PF02913 FAD linked oxidases, C-terminal domain AFK25_04265 PF01565 FAD binding domain AFK25_04270 PF05651 Putative sugar diacid recognition AFK25_04270 PF17853 GGDEF-like domain AFK25_04270 PF13556 PucR C-terminal helix-turn-helix domain AFK25_04275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_04275 PF00672 HAMP domain AFK25_04275 PF02743 Cache domain AFK25_04280 PF00356 Bacterial regulatory proteins, lacI family AFK25_04285 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFK25_04285 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFK25_04285 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFK25_04290 PF13419 Haloacid dehalogenase-like hydrolase AFK25_04295 PF01547 Bacterial extracellular solute-binding protein AFK25_04300 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_04305 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_04330 PF02652 L-lactate permease AFK25_04335 PF00392 Bacterial regulatory proteins, gntR family AFK25_04335 PF07729 FCD domain AFK25_04340 PF02754 Cysteine-rich domain AFK25_04345 PF13183 4Fe-4S dicluster domain AFK25_04345 PF02589 LUD domain AFK25_04345 PF11870 Domain of unknown function (DUF3390) AFK25_04350 PF02589 LUD domain AFK25_04355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_04355 PF00989 PAS fold AFK25_04355 PF13188 PAS domain AFK25_04355 PF00512 His Kinase A (phospho-acceptor) domain AFK25_04355 PF13426 PAS domain AFK25_04360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_04365 PF02653 Branched-chain amino acid transport system / permease component AFK25_04370 PF00005 ABC transporter AFK25_04375 PF13407 Periplasmic binding protein domain AFK25_04380 PF01008 Initiation factor 2 subunit family AFK25_04385 PF01636 Phosphotransferase enzyme family AFK25_04390 PF00795 Carbon-nitrogen hydrolase AFK25_04395 PF00155 Aminotransferase class I and II AFK25_04400 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AFK25_04400 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AFK25_04410 PF00596 Class II Aldolase and Adducin N-terminal domain AFK25_04415 PF03079 ARD/ARD' family AFK25_04425 PF02535 ZIP Zinc transporter AFK25_04430 PF02743 Cache domain AFK25_04430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_04430 PF00512 His Kinase A (phospho-acceptor) domain AFK25_04435 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AFK25_04440 PF13520 Amino acid permease AFK25_04445 PF00005 ABC transporter AFK25_04455 PF00440 Bacterial regulatory proteins, tetR family AFK25_04460 PF00004 ATPase family associated with various cellular activities (AAA) AFK25_04460 PF07724 AAA domain (Cdc48 subfamily) AFK25_04460 PF10431 C-terminal, D2-small domain, of ClpB protein AFK25_04460 PF17871 AAA lid domain AFK25_04465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_04465 PF13426 PAS domain AFK25_04465 PF08447 PAS fold AFK25_04470 PF00989 PAS fold AFK25_04470 PF00512 His Kinase A (phospho-acceptor) domain AFK25_04470 PF18698 Histidine kinase sensor domain AFK25_04470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_04470 PF00672 HAMP domain AFK25_04475 PF00072 Response regulator receiver domain AFK25_04475 PF00486 Transcriptional regulatory protein, C terminal AFK25_04485 PF13115 YtkA-like AFK25_04500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_04500 PF00672 HAMP domain AFK25_04500 PF05227 CHASE3 domain AFK25_04510 PF01895 PhoU domain AFK25_04515 PF06508 Queuosine biosynthesis protein QueC AFK25_04520 PF01242 6-pyruvoyl tetrahydropterin synthase AFK25_04525 PF04055 Radical SAM superfamily AFK25_04535 PF13460 NAD(P)H-binding AFK25_04555 PF14166 YueH-like protein AFK25_04560 PF00512 His Kinase A (phospho-acceptor) domain AFK25_04560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_04560 PF00989 PAS fold AFK25_04560 PF08447 PAS fold AFK25_04565 PF00881 Nitroreductase family AFK25_04570 PF01638 HxlR-like helix-turn-helix AFK25_04585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_04590 PF13244 Domain of unknown function (DUF4040) AFK25_04590 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFK25_04590 PF00361 Proton-conducting membrane transporter AFK25_04595 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AFK25_04600 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFK25_04605 PF00361 Proton-conducting membrane transporter AFK25_04610 PF01899 Na+/H+ ion antiporter subunit AFK25_04615 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AFK25_04620 PF03334 Na+/H+ antiporter subunit AFK25_04625 PF12697 Alpha/beta hydrolase family AFK25_04630 PF01476 LysM domain AFK25_04630 PF05257 CHAP domain AFK25_04640 PF03123 CAT RNA binding domain AFK25_04640 PF00874 PRD domain AFK25_04650 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AFK25_04650 PF00367 phosphotransferase system, EIIB AFK25_04650 PF02378 Phosphotransferase system, EIIC AFK25_04655 PF00381 PTS HPr component phosphorylation site AFK25_04660 PF00391 PEP-utilising enzyme, mobile domain AFK25_04660 PF05524 PEP-utilising enzyme, N-terminal AFK25_04660 PF02896 PEP-utilising enzyme, TIM barrel domain AFK25_04665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_04665 PF00672 HAMP domain AFK25_04665 PF02743 Cache domain AFK25_04670 PF00106 short chain dehydrogenase AFK25_04675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFK25_04675 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFK25_04680 PF00155 Aminotransferase class I and II AFK25_04685 PF08864 UPF0302 domain AFK25_04685 PF08858 IDEAL domain AFK25_04695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_04695 PF00512 His Kinase A (phospho-acceptor) domain AFK25_04710 PF01584 CheW-like domain AFK25_04710 PF00072 Response regulator receiver domain AFK25_04715 PF00072 Response regulator receiver domain AFK25_04715 PF00990 Diguanylate cyclase, GGDEF domain AFK25_04725 PF00535 Glycosyl transferase family 2 AFK25_04735 PF00072 Response regulator receiver domain AFK25_04735 PF00486 Transcriptional regulatory protein, C terminal AFK25_04740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_04740 PF00989 PAS fold AFK25_04740 PF16736 Single Cache-like AFK25_04740 PF00512 His Kinase A (phospho-acceptor) domain AFK25_04745 PF03323 Bacillus/Clostridium GerA spore germination protein AFK25_04750 PF03845 Spore germination protein AFK25_04755 PF05504 Spore germination B3/ GerAC like, C-terminal AFK25_04760 PF03707 Bacterial signalling protein N terminal repeat AFK25_04760 PF00990 Diguanylate cyclase, GGDEF domain AFK25_04760 PF00563 EAL domain AFK25_04765 PF14177 YkyB-like protein AFK25_04770 PF02541 Ppx/GppA phosphatase family AFK25_04775 PF13090 Polyphosphate kinase C-terminal domain 2 AFK25_04775 PF02503 Polyphosphate kinase middle domain AFK25_04775 PF13089 Polyphosphate kinase N-terminal domain AFK25_04775 PF17941 Polyphosphate kinase C-terminal domain 1 AFK25_04780 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFK25_04785 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFK25_04790 PF10518 TAT (twin-arginine translocation) pathway signal sequence AFK25_04790 PF00149 Calcineurin-like phosphoesterase AFK25_04800 PF00563 EAL domain AFK25_04800 PF10388 EAL-domain associated signalling protein domain AFK25_04810 PF08796 Protein of unknown function (DUF1797) AFK25_04820 PF14602 Hexapeptide repeat of succinyl-transferase AFK25_04820 PF00132 Bacterial transferase hexapeptide (six repeats) AFK25_04820 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AFK25_04825 PF07687 Peptidase dimerisation domain AFK25_04825 PF01546 Peptidase family M20/M25/M40 AFK25_04830 PF00578 AhpC/TSA family AFK25_04835 PF02080 TrkA-C domain AFK25_04835 PF02254 TrkA-N domain AFK25_04840 PF17770 Ribonuclease J C-terminal domain AFK25_04840 PF00753 Metallo-beta-lactamase superfamily AFK25_04840 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AFK25_04855 PF01327 Polypeptide deformylase AFK25_04860 PF00676 Dehydrogenase E1 component AFK25_04865 PF02779 Transketolase, pyrimidine binding domain AFK25_04865 PF02780 Transketolase, C-terminal domain AFK25_04870 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFK25_04870 PF00364 Biotin-requiring enzyme AFK25_04870 PF02817 e3 binding domain AFK25_04875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFK25_04875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_04900 PF01276 Orn/Lys/Arg decarboxylase, major domain AFK25_04900 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AFK25_04920 PF00005 ABC transporter AFK25_04925 PF03060 Nitronate monooxygenase AFK25_04930 PF05256 Uncharacterised protein family (UPF0223) AFK25_04940 PF00459 Inositol monophosphatase family AFK25_04950 PF14036 YlaH-like protein AFK25_04965 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) AFK25_04975 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AFK25_04980 PF13638 PIN domain AFK25_04980 PF02562 PhoH-like protein AFK25_04990 PF07408 Protein of unknown function (DUF1507) AFK25_04995 PF01098 Cell cycle protein AFK25_05000 PF02785 Biotin carboxylase C-terminal domain AFK25_05000 PF02436 Conserved carboxylase domain AFK25_05000 PF00289 Biotin carboxylase, N-terminal domain AFK25_05000 PF00364 Biotin-requiring enzyme AFK25_05000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFK25_05000 PF00682 HMGL-like AFK25_05005 PF13333 Integrase core domain AFK25_05005 PF13276 HTH-like domain AFK25_05005 PF00665 Integrase core domain AFK25_05010 PF02628 Cytochrome oxidase assembly protein AFK25_05015 PF01040 UbiA prenyltransferase family AFK25_05020 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFK25_05020 PF00034 Cytochrome c AFK25_05020 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AFK25_05025 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFK25_05030 PF00510 Cytochrome c oxidase subunit III AFK25_05035 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AFK25_05040 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AFK25_05055 PF13333 Integrase core domain AFK25_05055 PF00665 Integrase core domain AFK25_05055 PF13276 HTH-like domain AFK25_05070 PF08868 YugN-like family AFK25_05075 PF00571 CBS domain AFK25_05080 PF00188 Cysteine-rich secretory protein family AFK25_05080 PF14504 CAP-associated N-terminal AFK25_05085 PF14071 Putative coat protein AFK25_05090 PF14003 YlbE-like protein AFK25_05100 PF06133 Control of competence regulator ComK, YlbF/YmcA AFK25_05105 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) AFK25_05125 PF01467 Cytidylyltransferase-like AFK25_05130 PF07670 Nucleoside recognition AFK25_05135 PF01734 Patatin-like phospholipase AFK25_05140 PF13180 PDZ domain AFK25_05140 PF05362 Lon protease (S16) C-terminal proteolytic domain AFK25_05145 PF05636 HIGH Nucleotidyl Transferase AFK25_05150 PF02620 Large ribosomal RNA subunit accumulation protein YceD AFK25_05155 PF01783 Ribosomal L32p protein family AFK25_05160 PF00378 Enoyl-CoA hydratase/isomerase AFK25_05170 PF08546 Ketopantoate reductase PanE/ApbA C terminal AFK25_05170 PF02558 Ketopantoate reductase PanE/ApbA AFK25_05180 PF10079 Bacillithiol biosynthesis BshC AFK25_05185 PF01795 MraW methylase family AFK25_05190 PF04977 Septum formation initiator AFK25_05200 PF00905 Penicillin binding protein transpeptidase domain AFK25_05200 PF03717 Penicillin-binding Protein dimerisation domain AFK25_05200 PF03793 PASTA domain AFK25_05205 PF08245 Mur ligase middle domain AFK25_05205 PF02875 Mur ligase family, glutamate ligase domain AFK25_05205 PF01225 Mur ligase family, catalytic domain AFK25_05210 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFK25_05210 PF00953 Glycosyl transferase family 4 AFK25_05215 PF08245 Mur ligase middle domain AFK25_05215 PF02875 Mur ligase family, glutamate ligase domain AFK25_05220 PF01098 Cell cycle protein AFK25_05225 PF03033 Glycosyltransferase family 28 N-terminal domain AFK25_05225 PF04101 Glycosyltransferase family 28 C-terminal domain AFK25_05230 PF01565 FAD binding domain AFK25_05230 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFK25_05235 PF08478 POTRA domain, FtsQ-type AFK25_05240 PF05949 Bacterial protein of unknown function (DUF881) AFK25_05245 PF05949 Bacterial protein of unknown function (DUF881) AFK25_05250 PF06947 Protein of unknown function (DUF1290) AFK25_05255 PF02491 SHS2 domain inserted in FTSA AFK25_05260 PF12327 FtsZ family, C-terminal domain AFK25_05260 PF00091 Tubulin/FtsZ family, GTPase domain AFK25_05265 PF03419 Sporulation factor SpoIIGA AFK25_05270 PF04542 Sigma-70 region 2 AFK25_05270 PF04545 Sigma-70, region 4 AFK25_05275 PF04545 Sigma-70, region 4 AFK25_05275 PF04539 Sigma-70 region 3 AFK25_05275 PF04542 Sigma-70 region 2 AFK25_05280 PF05239 PRC-barrel domain AFK25_05290 PF01168 Alanine racemase, N-terminal domain AFK25_05295 PF04472 Cell division protein SepF AFK25_05300 PF02325 YGGT family AFK25_05305 PF17774 Putative RNA-binding domain in YlmH AFK25_05305 PF01479 S4 domain AFK25_05310 PF05103 DivIVA protein AFK25_05315 PF08264 Anticodon-binding domain of tRNA AFK25_05315 PF00133 tRNA synthetases class I (I, L, M and V) AFK25_05315 PF06827 Zinc finger found in FPG and IleRS AFK25_05320 PF01252 Signal peptidase (SPase) II AFK25_05325 PF00849 RNA pseudouridylate synthase AFK25_05325 PF01479 S4 domain AFK25_05330 PF00156 Phosphoribosyl transferase domain AFK25_05335 PF00860 Permease family AFK25_05340 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFK25_05340 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFK25_05345 PF01979 Amidohydrolase family AFK25_05350 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFK25_05350 PF00117 Glutamine amidotransferase class-I AFK25_05355 PF02142 MGS-like domain AFK25_05355 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFK25_05355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFK25_05360 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AFK25_05360 PF00175 Oxidoreductase NAD-binding domain AFK25_05365 PF01180 Dihydroorotate dehydrogenase AFK25_05370 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFK25_05375 PF00156 Phosphoribosyl transferase domain AFK25_05390 PF00690 Cation transporter/ATPase, N-terminus AFK25_05390 PF00689 Cation transporting ATPase, C-terminus AFK25_05395 PF03755 YicC-like family, N-terminal region AFK25_05395 PF08340 Domain of unknown function (DUF1732) AFK25_05400 PF00625 Guanylate kinase AFK25_05405 PF01192 RNA polymerase Rpb6 AFK25_05410 PF04127 DNA / pantothenate metabolism flavoprotein AFK25_05410 PF02441 Flavoprotein AFK25_05415 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AFK25_05415 PF00271 Helicase conserved C-terminal domain AFK25_05415 PF17764 3′ DNA-binding domain (3′BD) AFK25_05415 PF04851 Type III restriction enzyme, res subunit AFK25_05415 PF18074 Primosomal protein N C-terminal domain AFK25_05420 PF01327 Polypeptide deformylase AFK25_05425 PF00551 Formyl transferase AFK25_05425 PF02911 Formyl transferase, C-terminal domain AFK25_05430 PF01189 16S rRNA methyltransferase RsmB/F AFK25_05430 PF01029 NusB family AFK25_05435 PF04055 Radical SAM superfamily AFK25_05445 PF03793 PASTA domain AFK25_05445 PF00069 Protein kinase domain AFK25_05450 PF16745 RsgA N-terminal domain AFK25_05450 PF03193 RsgA GTPase AFK25_05455 PF00834 Ribulose-phosphate 3 epimerase family AFK25_05460 PF04263 Thiamin pyrophosphokinase, catalytic domain AFK25_05460 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain AFK25_05465 PF08183 Stage V sporulation protein family AFK25_05470 PF00830 Ribosomal L28 family AFK25_05475 PF03780 Asp23 family, cell envelope-related function AFK25_05480 PF13684 Dihydroxyacetone kinase family AFK25_05480 PF02734 DAK2 domain AFK25_05485 PF01842 ACT domain AFK25_05485 PF03315 Serine dehydratase beta chain AFK25_05490 PF03313 Serine dehydratase alpha chain AFK25_05495 PF17191 RecG wedge domain AFK25_05495 PF00271 Helicase conserved C-terminal domain AFK25_05495 PF00270 DEAD/DEAH box helicase AFK25_05500 PF01575 MaoC like domain AFK25_05500 PF08279 HTH domain AFK25_05505 PF02504 Fatty acid synthesis protein AFK25_05510 PF00698 Acyl transferase domain AFK25_05520 PF00550 Phosphopantetheine attachment site AFK25_05525 PF14622 Ribonuclease-III-like AFK25_05525 PF00035 Double-stranded RNA binding motif AFK25_05530 PF06470 SMC proteins Flexible Hinge Domain AFK25_05530 PF02463 RecF/RecN/SMC N terminal domain AFK25_05535 PF00448 SRP54-type protein, GTPase domain AFK25_05535 PF02881 SRP54-type protein, helical bundle domain AFK25_05540 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AFK25_05545 PF02978 Signal peptide binding domain AFK25_05545 PF00448 SRP54-type protein, GTPase domain AFK25_05545 PF02881 SRP54-type protein, helical bundle domain AFK25_05550 PF00886 Ribosomal protein S16 AFK25_05560 PF11068 YlqD protein AFK25_05565 PF01782 RimM N-terminal domain AFK25_05565 PF05239 PRC-barrel domain AFK25_05570 PF01746 tRNA (Guanine-1)-methyltransferase AFK25_05575 PF01245 Ribosomal protein L19 AFK25_05580 PF10502 Signal peptidase, peptidase S26 AFK25_05585 PF01926 50S ribosome-binding GTPase AFK25_05590 PF01351 Ribonuclease HII AFK25_05600 PF01312 FlhB HrpN YscU SpaS Family AFK25_05605 PF00549 CoA-ligase AFK25_05605 PF08442 ATP-grasp domain AFK25_05610 PF00549 CoA-ligase AFK25_05610 PF02629 CoA binding domain AFK25_05615 PF02481 DNA recombination-mediator protein A AFK25_05620 PF01396 Topoisomerase DNA binding C4 zinc finger AFK25_05620 PF01751 Toprim domain AFK25_05620 PF01131 DNA topoisomerase AFK25_05625 PF01134 Glucose inhibited division protein A AFK25_05630 PF00589 Phage integrase family AFK25_05630 PF02899 Phage integrase, N-terminal SAM-like domain AFK25_05635 PF00227 Proteasome subunit AFK25_05640 PF07724 AAA domain (Cdc48 subfamily) AFK25_05640 PF00004 ATPase family associated with various cellular activities (AAA) AFK25_05640 PF10431 C-terminal, D2-small domain, of ClpB protein AFK25_05645 PF06018 CodY GAF-like domain AFK25_05645 PF08222 CodY helix-turn-helix domain AFK25_05650 PF00460 Flagella basal body rod protein AFK25_05655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFK25_05655 PF00460 Flagella basal body rod protein AFK25_05660 PF02049 Flagellar hook-basal body complex protein FliE AFK25_05665 PF08345 Flagellar M-ring protein C-terminal AFK25_05665 PF01514 Secretory protein of YscJ/FliF family AFK25_05670 PF14841 FliG middle domain AFK25_05670 PF01706 FliG C-terminal domain AFK25_05670 PF14842 FliG N-terminal domain AFK25_05675 PF02108 Flagellar assembly protein FliH AFK25_05680 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFK25_05680 PF18269 T3SS EscN ATPase C-terminal domain AFK25_05680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFK25_05685 PF02050 Flagellar FliJ protein AFK25_05695 PF02120 Flagellar hook-length control protein FliK AFK25_05700 PF03963 Flagellar hook capping protein - N-terminal region AFK25_05705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFK25_05705 PF00460 Flagella basal body rod protein AFK25_05710 PF06289 Flagellar and Swarming motility proteins AFK25_05715 PF03748 Flagellar basal body-associated protein FliL AFK25_05720 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFK25_05720 PF02154 Flagellar motor switch protein FliM AFK25_05725 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFK25_05725 PF04509 CheC-like family AFK25_05730 PF00072 Response regulator receiver domain AFK25_05735 PF04347 Flagellar biosynthesis protein, FliO AFK25_05740 PF00813 FliP family AFK25_05745 PF01313 Bacterial export proteins, family 3 AFK25_05750 PF01311 Bacterial export proteins, family 1 AFK25_05755 PF01312 FlhB HrpN YscU SpaS Family AFK25_05760 PF00771 FHIPEP family AFK25_05765 PF00448 SRP54-type protein, GTPase domain AFK25_05770 PF10609 NUBPL iron-transfer P-loop NTPase AFK25_05775 PF01339 CheB methylesterase AFK25_05775 PF00072 Response regulator receiver domain AFK25_05780 PF07194 P2 response regulator binding domain AFK25_05780 PF01584 CheW-like domain AFK25_05780 PF02895 Signal transducing histidine kinase, homodimeric domain AFK25_05780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_05780 PF01627 Hpt domain AFK25_05785 PF01584 CheW-like domain AFK25_05790 PF04509 CheC-like family AFK25_05795 PF03975 CheD chemotactic sensory transduction AFK25_05805 PF04542 Sigma-70 region 2 AFK25_05805 PF04545 Sigma-70, region 4 AFK25_05805 PF04539 Sigma-70 region 3 AFK25_05820 PF00318 Ribosomal protein S2 AFK25_05825 PF00889 Elongation factor TS AFK25_05830 PF00696 Amino acid kinase family AFK25_05835 PF01765 Ribosome recycling factor AFK25_05840 PF01255 Putative undecaprenyl diphosphate synthase AFK25_05850 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AFK25_05850 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFK25_05850 PF13288 DXP reductoisomerase C-terminal domain AFK25_05855 PF02163 Peptidase family M50 AFK25_05855 PF13180 PDZ domain AFK25_05860 PF03129 Anticodon binding domain AFK25_05860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFK25_05860 PF04073 Aminoacyl-tRNA editing domain AFK25_05865 PF02811 PHP domain AFK25_05865 PF14579 Helix-hairpin-helix motif AFK25_05865 PF11490 DNA polymerase III polC-type N-terminus II AFK25_05865 PF00929 Exonuclease AFK25_05865 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFK25_05865 PF14480 DNA polymerase III polC-type N-terminus I AFK25_05865 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFK25_05870 PF17384 RimP C-terminal SH3 domain AFK25_05870 PF02576 RimP N-terminal domain AFK25_05875 PF13184 NusA-like KH domain AFK25_05875 PF00575 S1 RNA binding domain AFK25_05875 PF08529 NusA N-terminal domain AFK25_05880 PF04296 Protein of unknown function (DUF448) AFK25_05885 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AFK25_05890 PF00009 Elongation factor Tu GTP binding domain AFK25_05890 PF11987 Translation-initiation factor 2 AFK25_05890 PF04760 Translation initiation factor IF-2, N-terminal region AFK25_05895 PF04456 Protein of unknown function (DUF503) AFK25_05900 PF02033 Ribosome-binding factor A AFK25_05905 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFK25_05905 PF16198 tRNA pseudouridylate synthase B C-terminal domain AFK25_05910 PF01687 Riboflavin kinase AFK25_05910 PF06574 FAD synthetase AFK25_05915 PF00312 Ribosomal protein S15 AFK25_05920 PF00013 KH domain AFK25_05920 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFK25_05920 PF01138 3' exoribonuclease family, domain 1 AFK25_05920 PF03725 3' exoribonuclease family, domain 2 AFK25_05920 PF00575 S1 RNA binding domain AFK25_05925 PF01522 Polysaccharide deacetylase AFK25_05930 PF00675 Insulinase (Peptidase family M16) AFK25_05930 PF05193 Peptidase M16 inactive domain AFK25_05935 PF05239 PRC-barrel domain AFK25_05940 PF16924 Dipicolinate synthase subunit A N-terminal domain AFK25_05940 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AFK25_05945 PF02441 Flavoprotein AFK25_05950 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFK25_05950 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFK25_05955 PF00696 Amino acid kinase family AFK25_05955 PF13840 ACT domain AFK25_05960 PF00701 Dihydrodipicolinate synthetase family AFK25_05965 PF00753 Metallo-beta-lactamase superfamily AFK25_05965 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AFK25_05965 PF17770 Ribonuclease J C-terminal domain AFK25_05970 PF00574 Clp protease AFK25_05980 PF01580 FtsK/SpoIIIE family AFK25_05980 PF17854 FtsK alpha domain AFK25_05980 PF09397 Ftsk gamma domain AFK25_05985 PF07702 UTRA domain AFK25_05985 PF00392 Bacterial regulatory proteins, gntR family AFK25_06010 PF13556 PucR C-terminal helix-turn-helix domain AFK25_06010 PF17853 GGDEF-like domain AFK25_06015 PF00171 Aldehyde dehydrogenase family AFK25_06020 PF01619 Proline dehydrogenase AFK25_06025 PF00474 Sodium:solute symporter family AFK25_06030 PF02447 GntP family permease AFK25_06035 PF09587 Bacterial capsule synthesis protein PGA_cap AFK25_06040 PF00582 Universal stress protein family AFK25_06045 PF00916 Sulfate permease family AFK25_06045 PF01740 STAS domain AFK25_06060 PF06039 Malate:quinone oxidoreductase (Mqo) AFK25_06075 PF00271 Helicase conserved C-terminal domain AFK25_06075 PF00176 SNF2 family N-terminal domain AFK25_06080 PF01555 DNA methylase AFK25_06090 PF04471 Restriction endonuclease AFK25_06090 PF14338 Mrr N-terminal domain AFK25_06130 PF00293 NUDIX domain AFK25_06130 PF09297 NADH pyrophosphatase zinc ribbon domain AFK25_06150 PF01614 Bacterial transcriptional regulator AFK25_06150 PF09339 IclR helix-turn-helix domain AFK25_06155 PF02682 Carboxyltransferase domain, subdomain C and D AFK25_06160 PF02626 Carboxyltransferase domain, subdomain A and B AFK25_06165 PF03746 LamB/YcsF family AFK25_06170 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AFK25_06180 PF12323 Helix-turn-helix domain AFK25_06180 PF07282 Putative transposase DNA-binding domain AFK25_06180 PF01385 Probable transposase AFK25_06185 PF08712 Scaffold protein Nfu/NifU N terminal AFK25_06185 PF13769 Virulence factor AFK25_06195 PF00293 NUDIX domain AFK25_06200 PF00004 ATPase family associated with various cellular activities (AAA) AFK25_06200 PF17862 AAA+ lid domain AFK25_06200 PF01434 Peptidase family M41 AFK25_06230 PF04134 Protein of unknown function, DUF393 AFK25_06235 PF00578 AhpC/TSA family AFK25_06240 PF01323 DSBA-like thioredoxin domain AFK25_06245 PF00392 Bacterial regulatory proteins, gntR family AFK25_06245 PF00155 Aminotransferase class I and II AFK25_06250 PF04299 Putative FMN-binding domain AFK25_06255 PF01810 LysE type translocator AFK25_06265 PF13614 AAA domain AFK25_06295 PF00171 Aldehyde dehydrogenase family AFK25_06305 PF01964 Radical SAM ThiC family AFK25_06305 PF13667 ThiC-associated domain AFK25_06310 PF03703 Bacterial PH domain AFK25_06315 PF03703 Bacterial PH domain AFK25_06340 PF08141 Small acid-soluble spore protein H family AFK25_06345 PF03466 LysR substrate binding domain AFK25_06345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFK25_06350 PF00258 Flavodoxin AFK25_06350 PF00667 FAD binding domain AFK25_06350 PF00175 Oxidoreductase NAD-binding domain AFK25_06355 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFK25_06355 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFK25_06360 PF01906 Putative heavy-metal-binding AFK25_06370 PF01022 Bacterial regulatory protein, arsR family AFK25_06380 PF10086 YhfC intramembrane metalloprotease AFK25_06385 PF00248 Aldo/keto reductase family AFK25_06395 PF01268 Formate--tetrahydrofolate ligase AFK25_06400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFK25_06405 PF07690 Major Facilitator Superfamily AFK25_06410 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AFK25_06410 PF00356 Bacterial regulatory proteins, lacI family AFK25_06415 PF02678 Pirin AFK25_06415 PF17954 Quercetinase C-terminal cupin domain AFK25_06420 PF07681 DoxX AFK25_06425 PF01047 MarR family AFK25_06430 PF01814 Hemerythrin HHE cation binding domain AFK25_06430 PF04405 Domain of Unknown function (DUF542) AFK25_06435 PF07486 Cell Wall Hydrolase AFK25_06440 PF13732 Domain of unknown function (DUF4162) AFK25_06440 PF00005 ABC transporter AFK25_06450 PF00440 Bacterial regulatory proteins, tetR family AFK25_06450 PF13977 BetI-type transcriptional repressor, C-terminal AFK25_06455 PF01274 Malate synthase AFK25_06460 PF09339 IclR helix-turn-helix domain AFK25_06460 PF01614 Bacterial transcriptional regulator AFK25_06470 PF00188 Cysteine-rich secretory protein family AFK25_06475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFK25_06475 PF02378 Phosphotransferase system, EIIC AFK25_06480 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFK25_06480 PF05043 Mga helix-turn-helix domain AFK25_06480 PF00874 PRD domain AFK25_06480 PF08279 HTH domain AFK25_06480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFK25_06485 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFK25_06490 PF01232 Mannitol dehydrogenase Rossmann domain AFK25_06490 PF08125 Mannitol dehydrogenase C-terminal domain AFK25_06500 PF00989 PAS fold AFK25_06500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_06500 PF00512 His Kinase A (phospho-acceptor) domain AFK25_06505 PF00072 Response regulator receiver domain AFK25_06505 PF08664 YcbB domain AFK25_06510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_06515 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_06520 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_06525 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFK25_06530 PF00005 ABC transporter AFK25_06540 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AFK25_06545 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AFK25_06550 PF00535 Glycosyl transferase family 2 AFK25_06555 PF04138 GtrA-like protein AFK25_06560 PF01022 Bacterial regulatory protein, arsR family AFK25_06575 PF09021 HutP AFK25_06580 PF00221 Aromatic amino acid lyase AFK25_06585 PF01175 Urocanase Rossmann-like domain AFK25_06585 PF17392 Urocanase C-terminal domain AFK25_06585 PF17391 Urocanase N-terminal domain AFK25_06590 PF07969 Amidohydrolase family AFK25_06595 PF00491 Arginase family AFK25_06600 PF00665 Integrase core domain AFK25_06600 PF13333 Integrase core domain AFK25_06600 PF13276 HTH-like domain AFK25_06615 PF13685 Iron-containing alcohol dehydrogenase AFK25_06625 PF01266 FAD dependent oxidoreductase AFK25_06640 PF10057 Uncharacterized conserved protein (DUF2294) AFK25_06645 PF00781 Diacylglycerol kinase catalytic domain AFK25_06650 PF03773 Predicted permease AFK25_06660 PF13411 MerR HTH family regulatory protein AFK25_06670 PF02096 60Kd inner membrane protein AFK25_06685 PF00291 Pyridoxal-phosphate dependent enzyme AFK25_06690 PF05193 Peptidase M16 inactive domain AFK25_06695 PF05193 Peptidase M16 inactive domain AFK25_06695 PF00675 Insulinase (Peptidase family M16) AFK25_06705 PF11588 Protein of unknown function (DUF3243) AFK25_06710 PF11868 Protein of unknown function (DUF3388) AFK25_06715 PF13464 Domain of unknown function (DUF4115) AFK25_06720 PF01066 CDP-alcohol phosphatidyltransferase AFK25_06725 PF02464 Competence-damaged protein AFK25_06725 PF00994 Probable molybdopterin binding domain AFK25_06725 PF18146 Damage-inducible protein CinA KH domain AFK25_06730 PF00154 recA bacterial DNA recombination protein AFK25_06735 PF00013 KH domain AFK25_06735 PF01966 HD domain AFK25_06735 PF12072 Domain of unknown function (DUF3552) AFK25_06745 PF04232 Stage V sporulation protein S (SpoVS) AFK25_06750 PF01244 Membrane dipeptidase (Peptidase family M19) AFK25_06755 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFK25_06755 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AFK25_06755 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AFK25_06760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFK25_06765 PF00665 Integrase core domain AFK25_06765 PF13276 HTH-like domain AFK25_06765 PF13333 Integrase core domain AFK25_06770 PF00919 Uncharacterized protein family UPF0004 AFK25_06770 PF01938 TRAM domain AFK25_06770 PF04055 Radical SAM superfamily AFK25_06775 PF06133 Control of competence regulator ComK, YlbF/YmcA AFK25_06780 PF10628 Outer spore coat protein E (CotE) AFK25_06785 PF05190 MutS family domain IV AFK25_06785 PF00488 MutS domain V AFK25_06785 PF01624 MutS domain I AFK25_06785 PF05188 MutS domain II AFK25_06785 PF05192 MutS domain III AFK25_06790 PF08676 MutL C terminal dimerisation domain AFK25_06790 PF01119 DNA mismatch repair protein, C-terminal domain AFK25_06800 PF17209 Hfq protein AFK25_06805 PF00004 ATPase family associated with various cellular activities (AAA) AFK25_06805 PF17866 AAA lid domain AFK25_06810 PF13193 AMP-binding enzyme C-terminal domain AFK25_06810 PF00501 AMP-binding enzyme AFK25_06820 PF02515 CoA-transferase family III AFK25_06825 PF00501 AMP-binding enzyme AFK25_06825 PF13193 AMP-binding enzyme C-terminal domain AFK25_06830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFK25_06830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFK25_06835 PF02803 Thiolase, C-terminal domain AFK25_06835 PF00108 Thiolase, N-terminal domain AFK25_06840 PF03458 UPF0126 domain AFK25_06845 PF01926 50S ribosome-binding GTPase AFK25_06845 PF16360 GTP-binding GTPase Middle Region AFK25_06845 PF13167 GTP-binding GTPase N-terminal AFK25_06850 PF06838 Methionine gamma-lyase AFK25_06855 PF13411 MerR HTH family regulatory protein AFK25_06860 PF00120 Glutamine synthetase, catalytic domain AFK25_06860 PF03951 Glutamine synthetase, beta-Grasp domain AFK25_06865 PF00717 Peptidase S24-like AFK25_06865 PF01726 LexA DNA binding domain AFK25_06870 PF01476 LysM domain AFK25_06875 PF00239 Resolvase, N terminal domain AFK25_06880 PF05979 Bacterial protein of unknown function (DUF896) AFK25_06885 PF02779 Transketolase, pyrimidine binding domain AFK25_06885 PF02780 Transketolase, C-terminal domain AFK25_06885 PF00456 Transketolase, thiamine diphosphate binding domain AFK25_06890 PF03672 Uncharacterised protein family (UPF0154) AFK25_06895 PF02683 Cytochrome C biogenesis protein transmembrane region AFK25_06900 PF00072 Response regulator receiver domain AFK25_06905 PF07301 Protein of unknown function (DUF1453) AFK25_06910 PF11084 Protein of unknown function (DUF2621) AFK25_06915 PF08179 Small acid-soluble spore protein P family AFK25_06930 PF00694 Aconitase C-terminal domain AFK25_06930 PF00330 Aconitase family (aconitate hydratase) AFK25_06950 PF02592 Putative vitamin uptake transporter AFK25_06960 PF10782 Zinc-finger AFK25_06970 PF00313 'Cold-shock' DNA-binding domain AFK25_06980 PF01894 Uncharacterised protein family UPF0047 AFK25_06985 PF04309 Glycerol-3-phosphate responsive antiterminator AFK25_06990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFK25_06990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFK25_06995 PF17248 Family of unknown function (DUF5317) AFK25_07000 PF01966 HD domain AFK25_07005 PF08220 DeoR-like helix-turn-helix domain AFK25_07005 PF00455 DeoR C terminal sensor domain AFK25_07010 PF00294 pfkB family carbohydrate kinase AFK25_07015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFK25_07015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFK25_07020 PF00258 Flavodoxin AFK25_07025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_07025 PF00512 His Kinase A (phospho-acceptor) domain AFK25_07025 PF00989 PAS fold AFK25_07025 PF13188 PAS domain AFK25_07025 PF13426 PAS domain AFK25_07030 PF02602 Uroporphyrinogen-III synthase HemD AFK25_07035 PF02743 Cache domain AFK25_07035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_07035 PF00672 HAMP domain AFK25_07045 PF04307 LexA-binding, inner membrane-associated putative hydrolase AFK25_07050 PF03737 Aldolase/RraA AFK25_07055 PF01209 ubiE/COQ5 methyltransferase family AFK25_07065 PF07690 Major Facilitator Superfamily AFK25_07070 PF04204 Homoserine O-succinyltransferase AFK25_07075 PF06491 Disulphide isomerase AFK25_07080 PF04445 Putative SAM-dependent methyltransferase AFK25_07085 PF00375 Sodium:dicarboxylate symporter family AFK25_07095 PF02416 mttA/Hcf106 family AFK25_07100 PF00902 Sec-independent protein translocase protein (TatC) AFK25_07105 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFK25_07105 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AFK25_07110 PF00374 Nickel-dependent hydrogenase AFK25_07115 PF01292 Prokaryotic cytochrome b561 AFK25_07120 PF01750 Hydrogenase maturation protease AFK25_07130 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AFK25_07135 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFK25_07140 PF01300 Telomere recombination AFK25_07140 PF07503 HypF finger AFK25_07140 PF00708 Acylphosphatase AFK25_07140 PF17788 HypF Kae1-like domain AFK25_07145 PF01455 HupF/HypC family AFK25_07150 PF01924 Hydrogenase formation hypA family AFK25_07155 PF00586 AIR synthase related protein, N-terminal domain AFK25_07155 PF02769 AIR synthase related protein, C-terminal domain AFK25_07160 PF00303 Thymidylate synthase AFK25_07165 PF00186 Dihydrofolate reductase AFK25_07170 PF00291 Pyridoxal-phosphate dependent enzyme AFK25_07170 PF00585 C-terminal regulatory domain of Threonine dehydratase AFK25_07175 PF10751 Protein of unknown function (DUF2535) AFK25_07180 PF02645 Uncharacterised protein, DegV family COG1307 AFK25_07185 PF02630 SCO1/SenC AFK25_07190 PF13472 GDSL-like Lipase/Acylhydrolase family AFK25_07200 PF17126 RsmF rRNA methyltransferase first C-terminal domain AFK25_07200 PF01189 16S rRNA methyltransferase RsmB/F AFK25_07200 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AFK25_07205 PF02660 Glycerol-3-phosphate acyltransferase AFK25_07210 PF13380 CoA binding domain AFK25_07215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_07215 PF00986 DNA gyrase B subunit, carboxyl terminus AFK25_07215 PF01751 Toprim domain AFK25_07215 PF00204 DNA gyrase B AFK25_07220 PF00521 DNA gyrase/topoisomerase IV, subunit A AFK25_07220 PF03989 DNA gyrase C-terminal domain, beta-propeller AFK25_07230 PF00367 phosphotransferase system, EIIB AFK25_07230 PF02378 Phosphotransferase system, EIIC AFK25_07235 PF00128 Alpha amylase, catalytic domain AFK25_07235 PF16657 Maltogenic Amylase, C-terminal domain AFK25_07240 PF07702 UTRA domain AFK25_07240 PF00392 Bacterial regulatory proteins, gntR family AFK25_07245 PF00471 Ribosomal protein L33 AFK25_07250 PF17284 Spermidine synthase tetramerisation domain AFK25_07255 PF01226 Formate/nitrite transporter AFK25_07260 PF01842 ACT domain AFK25_07260 PF00551 Formyl transferase AFK25_07265 PF02334 Replication terminator protein AFK25_07270 PF02583 Metal-sensitive transcriptional repressor AFK25_07275 PF07728 AAA domain (dynein-related subfamily) AFK25_07280 PF00092 von Willebrand factor type A domain AFK25_07285 PF01235 Sodium:alanine symporter family AFK25_07305 PF01751 Toprim domain AFK25_07305 PF01131 DNA topoisomerase AFK25_07315 PF13419 Haloacid dehalogenase-like hydrolase AFK25_07335 PF00027 Cyclic nucleotide-binding domain AFK25_07335 PF13545 Crp-like helix-turn-helix domain AFK25_07340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFK25_07340 PF00403 Heavy-metal-associated domain AFK25_07340 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_07350 PF09335 SNARE associated Golgi protein AFK25_07370 PF13416 Bacterial extracellular solute-binding protein AFK25_07380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFK25_07380 PF00403 Heavy-metal-associated domain AFK25_07380 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_07395 PF13411 MerR HTH family regulatory protein AFK25_07415 PF00005 ABC transporter AFK25_07425 PF00106 short chain dehydrogenase AFK25_07435 PF00892 EamA-like transporter family AFK25_07440 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFK25_07445 PF02040 Arsenical pump membrane protein AFK25_07450 PF01022 Bacterial regulatory protein, arsR family AFK25_07455 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFK25_07455 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFK25_07460 PF01693 Caulimovirus viroplasmin AFK25_07480 PF12679 ABC-2 family transporter protein AFK25_07485 PF00005 ABC transporter AFK25_07490 PF13472 GDSL-like Lipase/Acylhydrolase family AFK25_07495 PF03951 Glutamine synthetase, beta-Grasp domain AFK25_07495 PF00120 Glutamine synthetase, catalytic domain AFK25_07500 PF00313 'Cold-shock' DNA-binding domain AFK25_07510 PF01136 Peptidase family U32 AFK25_07510 PF12392 Collagenase AFK25_07520 PF00005 ABC transporter AFK25_07525 PF00392 Bacterial regulatory proteins, gntR family AFK25_07545 PF00291 Pyridoxal-phosphate dependent enzyme AFK25_07545 PF13291 ACT domain AFK25_07550 PF05067 Manganese containing catalase AFK25_07555 PF10842 Protein of unknown function (DUF2642) AFK25_07560 PF00989 PAS fold AFK25_07560 PF00512 His Kinase A (phospho-acceptor) domain AFK25_07560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_07565 PF01235 Sodium:alanine symporter family AFK25_07570 PF01554 MatE AFK25_07575 PF00892 EamA-like transporter family AFK25_07580 PF16916 Dimerisation domain of Zinc Transporter AFK25_07580 PF01545 Cation efflux family AFK25_07585 PF13726 Na+-H+ antiporter family AFK25_07585 PF03553 Na+/H+ antiporter family AFK25_07595 PF02557 D-alanyl-D-alanine carboxypeptidase AFK25_07600 PF01048 Phosphorylase superfamily AFK25_07610 PF14191 YodL-like AFK25_07615 PF07070 SpoOM protein AFK25_07625 PF04055 Radical SAM superfamily AFK25_07625 PF06968 Biotin and Thiamin Synthesis associated domain AFK25_07630 PF01494 FAD binding domain AFK25_07645 PF01521 Iron-sulphur cluster biosynthesis AFK25_07650 PF03061 Thioesterase superfamily AFK25_07660 PF08177 Small acid-soluble spore protein N family AFK25_07665 PF13040 Fur-regulated basic protein B AFK25_07670 PF00578 AhpC/TSA family AFK25_07675 PF10752 Protein of unknown function (DUF2533) AFK25_07680 PF00350 Dynamin family AFK25_07685 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AFK25_07690 PF00195 Chalcone and stilbene synthases, N-terminal domain AFK25_07690 PF02797 Chalcone and stilbene synthases, C-terminal domain AFK25_07705 PF09125 Cytochrome C oxidase subunit II, transmembrane AFK25_07705 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFK25_07710 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFK25_07715 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AFK25_07720 PF13307 Helicase C-terminal domain AFK25_07725 PF02926 THUMP domain AFK25_07725 PF01170 Putative RNA methylase family UPF0020 AFK25_07730 PF00990 Diguanylate cyclase, GGDEF domain AFK25_07730 PF00563 EAL domain AFK25_07730 PF03707 Bacterial signalling protein N terminal repeat AFK25_07735 PF05103 DivIVA protein AFK25_07740 PF11122 Inner spore coat protein D AFK25_07745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_07765 PF13426 PAS domain AFK25_07765 PF07228 Stage II sporulation protein E (SpoIIE) AFK25_07770 PF00378 Enoyl-CoA hydratase/isomerase AFK25_07775 PF02581 Thiamine monophosphate synthase AFK25_07780 PF02110 Hydroxyethylthiazole kinase family AFK25_07785 PF03063 Prismane/CO dehydrogenase family AFK25_07790 PF01695 IstB-like ATP binding protein AFK25_07795 PF02796 Helix-turn-helix domain of resolvase AFK25_07795 PF00665 Integrase core domain AFK25_07805 PF00565 Staphylococcal nuclease homologue AFK25_07805 PF05901 Excalibur calcium-binding domain AFK25_07810 PF00300 Histidine phosphatase superfamily (branch 1) AFK25_07815 PF00005 ABC transporter AFK25_07835 PF03707 Bacterial signalling protein N terminal repeat AFK25_07835 PF00990 Diguanylate cyclase, GGDEF domain AFK25_07835 PF00563 EAL domain AFK25_07840 PF00403 Heavy-metal-associated domain AFK25_07845 PF01022 Bacterial regulatory protein, arsR family AFK25_07850 PF04851 Type III restriction enzyme, res subunit AFK25_07850 PF13307 Helicase C-terminal domain AFK25_07850 PF00929 Exonuclease AFK25_07860 PF00909 Ammonium Transporter Family AFK25_07875 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AFK25_07875 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AFK25_07880 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFK25_07885 PF12706 Beta-lactamase superfamily domain AFK25_07890 PF00664 ABC transporter transmembrane region AFK25_07890 PF00005 ABC transporter AFK25_07895 PF00005 ABC transporter AFK25_07895 PF00664 ABC transporter transmembrane region AFK25_07905 PF13439 Glycosyltransferase Family 4 AFK25_07905 PF00534 Glycosyl transferases group 1 AFK25_07910 PF01636 Phosphotransferase enzyme family AFK25_07915 PF00255 Glutathione peroxidase AFK25_07920 PF00583 Acetyltransferase (GNAT) family AFK25_07920 PF00795 Carbon-nitrogen hydrolase AFK25_07925 PF00583 Acetyltransferase (GNAT) family AFK25_07945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFK25_07945 PF13378 Enolase C-terminal domain-like AFK25_07950 PF02653 Branched-chain amino acid transport system / permease component AFK25_07955 PF00005 ABC transporter AFK25_07960 PF13407 Periplasmic binding protein domain AFK25_07965 PF04397 LytTr DNA-binding domain AFK25_07965 PF00072 Response regulator receiver domain AFK25_07970 PF06580 Histidine kinase AFK25_07970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_07970 PF00672 HAMP domain AFK25_07970 PF02743 Cache domain AFK25_07980 PF17202 Single cache domain 3 AFK25_07980 PF00672 HAMP domain AFK25_07980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_07985 PF02386 Cation transport protein AFK25_07990 PF07690 Major Facilitator Superfamily AFK25_08000 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_08000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFK25_08010 PF05816 Toxic anion resistance protein (TelA) AFK25_08030 PF07690 Major Facilitator Superfamily AFK25_08035 PF00950 ABC 3 transport family AFK25_08040 PF00950 ABC 3 transport family AFK25_08045 PF00005 ABC transporter AFK25_08050 PF01297 Zinc-uptake complex component A periplasmic AFK25_08055 PF13520 Amino acid permease AFK25_08080 PF00291 Pyridoxal-phosphate dependent enzyme AFK25_08090 PF03006 Haemolysin-III related AFK25_08095 PF02770 Acyl-CoA dehydrogenase, middle domain AFK25_08095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFK25_08095 PF18158 Adaptive response protein AidB N-terminal domain AFK25_08100 PF13193 AMP-binding enzyme C-terminal domain AFK25_08100 PF00501 AMP-binding enzyme AFK25_08105 PF09278 MerR, DNA binding AFK25_08105 PF00376 MerR family regulatory protein AFK25_08110 PF13193 AMP-binding enzyme C-terminal domain AFK25_08110 PF00501 AMP-binding enzyme AFK25_08130 PF13732 Domain of unknown function (DUF4162) AFK25_08130 PF00005 ABC transporter AFK25_08140 PF00696 Amino acid kinase family AFK25_08140 PF01472 PUA domain AFK25_08145 PF00171 Aldehyde dehydrogenase family AFK25_08155 PF00005 ABC transporter AFK25_08160 PF01032 FecCD transport family AFK25_08165 PF01032 FecCD transport family AFK25_08170 PF01497 Periplasmic binding protein AFK25_08185 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFK25_08185 PF01367 5'-3' exonuclease, C-terminal SAM fold AFK25_08190 PF01609 Transposase DDE domain AFK25_08195 PF07690 Major Facilitator Superfamily AFK25_08265 PF01012 Electron transfer flavoprotein domain AFK25_08265 PF00766 Electron transfer flavoprotein FAD-binding domain AFK25_08270 PF01012 Electron transfer flavoprotein domain AFK25_08275 PF16653 Saccharopine dehydrogenase C-terminal domain AFK25_08275 PF03435 Saccharopine dehydrogenase NADP binding domain AFK25_08280 PF00171 Aldehyde dehydrogenase family AFK25_08285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFK25_08285 PF00205 Thiamine pyrophosphate enzyme, central domain AFK25_08285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFK25_08290 PF13520 Amino acid permease AFK25_08295 PF00171 Aldehyde dehydrogenase family AFK25_08300 PF00202 Aminotransferase class-III AFK25_08305 PF02515 CoA-transferase family III AFK25_08310 PF02770 Acyl-CoA dehydrogenase, middle domain AFK25_08310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFK25_08310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFK25_08320 PF00920 Dehydratase family AFK25_08325 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_08325 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFK25_08330 PF04898 Glutamate synthase central domain AFK25_08330 PF01493 GXGXG motif AFK25_08330 PF00310 Glutamine amidotransferases class-II AFK25_08330 PF01645 Conserved region in glutamate synthase AFK25_08335 PF03466 LysR substrate binding domain AFK25_08335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFK25_08340 PF00672 HAMP domain AFK25_08340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_08360 PF00171 Aldehyde dehydrogenase family AFK25_08380 PF00733 Asparagine synthase AFK25_08380 PF13537 Glutamine amidotransferase domain AFK25_08385 PF00394 Multicopper oxidase AFK25_08385 PF07731 Multicopper oxidase AFK25_08385 PF07732 Multicopper oxidase AFK25_08390 PF00403 Heavy-metal-associated domain AFK25_08395 PF00403 Heavy-metal-associated domain AFK25_08400 PF02583 Metal-sensitive transcriptional repressor AFK25_08425 PF00486 Transcriptional regulatory protein, C terminal AFK25_08425 PF00072 Response regulator receiver domain AFK25_08430 PF00672 HAMP domain AFK25_08430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_08430 PF00512 His Kinase A (phospho-acceptor) domain AFK25_08450 PF00251 Glycosyl hydrolases family 32 N-terminal domain AFK25_08450 PF08244 Glycosyl hydrolases family 32 C terminal AFK25_08465 PF01522 Polysaccharide deacetylase AFK25_08470 PF00248 Aldo/keto reductase family AFK25_08475 PF13186 Iron-sulfur cluster-binding domain AFK25_08475 PF04055 Radical SAM superfamily AFK25_08480 PF14602 Hexapeptide repeat of succinyl-transferase AFK25_08480 PF12464 Maltose acetyltransferase AFK25_08485 PF02673 Bacitracin resistance protein BacA AFK25_08500 PF00141 Peroxidase AFK25_08540 PF13361 UvrD-like helicase C-terminal domain AFK25_08540 PF00580 UvrD/REP helicase N-terminal domain AFK25_08555 PF00271 Helicase conserved C-terminal domain AFK25_08555 PF04851 Type III restriction enzyme, res subunit AFK25_08565 PF05504 Spore germination B3/ GerAC like, C-terminal AFK25_08575 PF03845 Spore germination protein AFK25_08580 PF00999 Sodium/hydrogen exchanger family AFK25_08580 PF02254 TrkA-N domain AFK25_08580 PF02080 TrkA-C domain AFK25_08585 PF02675 S-adenosylmethionine decarboxylase AFK25_08590 PF13847 Methyltransferase domain AFK25_08595 PF00561 alpha/beta hydrolase fold AFK25_08600 PF00155 Aminotransferase class I and II AFK25_08605 PF01032 FecCD transport family AFK25_08610 PF01032 FecCD transport family AFK25_08615 PF01497 Periplasmic binding protein AFK25_08620 PF00005 ABC transporter AFK25_08625 PF00563 EAL domain AFK25_08625 PF00990 Diguanylate cyclase, GGDEF domain AFK25_08625 PF03707 Bacterial signalling protein N terminal repeat AFK25_08630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_08635 PF02595 Glycerate kinase family AFK25_08645 PF02073 Thermophilic metalloprotease (M29) AFK25_08650 PF07694 5TMR of 5TMR-LYT AFK25_08650 PF00990 Diguanylate cyclase, GGDEF domain AFK25_08665 PF00011 Hsp20/alpha crystallin family AFK25_08670 PF12787 EcsC protein family AFK25_08675 PF01266 FAD dependent oxidoreductase AFK25_08675 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AFK25_08700 PF03838 Recombination protein U AFK25_08705 PF00912 Transglycosylase AFK25_08705 PF00905 Penicillin binding protein transpeptidase domain AFK25_08715 PF00730 HhH-GPD superfamily base excision DNA repair protein AFK25_08715 PF00633 Helix-hairpin-helix motif AFK25_08715 PF10576 Iron-sulfur binding domain of endonuclease III AFK25_08720 PF07261 Replication initiation and membrane attachment AFK25_08725 PF00152 tRNA synthetases class II (D, K and N) AFK25_08725 PF01336 OB-fold nucleic acid binding domain AFK25_08750 PF00155 Aminotransferase class I and II AFK25_08765 PF13307 Helicase C-terminal domain AFK25_08765 PF04851 Type III restriction enzyme, res subunit AFK25_08765 PF00929 Exonuclease AFK25_08770 PF02261 Aspartate decarboxylase AFK25_08775 PF02569 Pantoate-beta-alanine ligase AFK25_08780 PF02548 Ketopantoate hydroxymethyltransferase AFK25_08785 PF02237 Biotin protein ligase C terminal domain AFK25_08785 PF03099 Biotin/lipoate A/B protein ligase family AFK25_08785 PF08279 HTH domain AFK25_08790 PF13735 tRNA nucleotidyltransferase domain 2 putative AFK25_08790 PF01743 Poly A polymerase head domain AFK25_08790 PF12627 Probable RNA and SrmB- binding site of polymerase A AFK25_08795 PF00534 Glycosyl transferases group 1 AFK25_08795 PF13439 Glycosyltransferase Family 4 AFK25_08800 PF02585 GlcNAc-PI de-N-acetylase AFK25_08805 PF02142 MGS-like domain AFK25_08810 PF05173 Dihydrodipicolinate reductase, C-terminus AFK25_08810 PF01113 Dihydrodipicolinate reductase, N-terminus AFK25_08815 PF03819 MazG nucleotide pyrophosphohydrolase domain AFK25_08820 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AFK25_08820 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AFK25_08825 PF09577 Sporulation protein YpjB (SpoYpjB) AFK25_08830 PF07187 Protein of unknown function (DUF1405) AFK25_08835 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFK25_08835 PF00032 Cytochrome b(C-terminal)/b6/petD AFK25_08840 PF00033 Cytochrome b/b6/petB AFK25_08845 PF00355 Rieske [2Fe-2S] domain AFK25_08850 PF10673 Protein of unknown function (DUF2487) AFK25_08855 PF08858 IDEAL domain AFK25_08855 PF08864 UPF0302 domain AFK25_08865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFK25_08870 PF02153 Prephenate dehydrogenase AFK25_08870 PF01842 ACT domain AFK25_08875 PF00155 Aminotransferase class I and II AFK25_08880 PF00290 Tryptophan synthase alpha chain AFK25_08885 PF00291 Pyridoxal-phosphate dependent enzyme AFK25_08890 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFK25_08895 PF00218 Indole-3-glycerol phosphate synthase AFK25_08900 PF02885 Glycosyl transferase family, helical bundle domain AFK25_08900 PF00591 Glycosyl transferase family, a/b domain AFK25_08905 PF00425 chorismate binding enzyme AFK25_08905 PF04715 Anthranilate synthase component I, N terminal region AFK25_08910 PF07736 Chorismate mutase type I AFK25_08915 PF01761 3-dehydroquinate synthase AFK25_08920 PF01264 Chorismate synthase AFK25_08925 PF03705 CheR methyltransferase, all-alpha domain AFK25_08925 PF01739 CheR methyltransferase, SAM binding domain AFK25_08930 PF00334 Nucleoside diphosphate kinase AFK25_08935 PF00348 Polyprenyl synthetase AFK25_08940 PF01209 ubiE/COQ5 methyltransferase family AFK25_08945 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 AFK25_08950 PF02081 Tryptophan RNA-binding attenuator protein AFK25_08955 PF01227 GTP cyclohydrolase I AFK25_08960 PF00216 Bacterial DNA-binding protein AFK25_08965 PF09547 Stage IV sporulation protein A (spore_IV_A) AFK25_08975 PF10966 Protein of unknown function (DUF2768) AFK25_08980 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFK25_08980 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFK25_08985 PF01926 50S ribosome-binding GTPase AFK25_08985 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFK25_08995 PF14045 YIEGIA protein AFK25_09005 PF01070 FMN-dependent dehydrogenase AFK25_09010 PF00575 S1 RNA binding domain AFK25_09015 PF01553 Acyltransferase AFK25_09020 PF02224 Cytidylate kinase AFK25_09030 PF07238 PilZ domain AFK25_09030 PF12945 Flagellar protein YcgR AFK25_09035 PF13367 PrsW family intramembrane metalloprotease AFK25_09040 PF07486 Cell Wall Hydrolase AFK25_09040 PF01471 Putative peptidoglycan binding domain AFK25_09045 PF14620 YpeB sporulation AFK25_09045 PF03413 Peptidase propeptide and YPEB domain AFK25_09050 PF00202 Aminotransferase class-III AFK25_09065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFK25_09065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFK25_09070 PF02585 GlcNAc-PI de-N-acetylase AFK25_09075 PF05389 Negative regulator of genetic competence (MecA) AFK25_09080 PF13411 MerR HTH family regulatory protein AFK25_09085 PF00149 Calcineurin-like phosphoesterase AFK25_09095 PF11007 Spore coat associated protein JA (CotJA) AFK25_09100 PF12652 CotJB protein AFK25_09105 PF05067 Manganese containing catalase AFK25_09110 PF10864 Protein of unknown function (DUF2663) AFK25_09120 PF02517 CPBP intramembrane metalloprotease AFK25_09125 PF00271 Helicase conserved C-terminal domain AFK25_09125 PF00270 DEAD/DEAH box helicase AFK25_09130 PF14493 Helix-turn-helix domain AFK25_09140 PF00719 Inorganic pyrophosphatase AFK25_09145 PF01842 ACT domain AFK25_09145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFK25_09145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFK25_09150 PF02811 PHP domain AFK25_09165 PF01923 Cobalamin adenosyltransferase AFK25_09180 PF02654 Cobalamin-5-phosphate synthase AFK25_09190 PF00155 Aminotransferase class I and II AFK25_09195 PF03186 CobD/Cbib protein AFK25_09200 PF00005 ABC transporter AFK25_09205 PF01032 FecCD transport family AFK25_09210 PF01497 Periplasmic binding protein AFK25_09215 PF00512 His Kinase A (phospho-acceptor) domain AFK25_09215 PF00989 PAS fold AFK25_09215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_09215 PF18698 Histidine kinase sensor domain AFK25_09215 PF00672 HAMP domain AFK25_09220 PF00072 Response regulator receiver domain AFK25_09220 PF00486 Transcriptional regulatory protein, C terminal AFK25_09225 PF01578 Cytochrome C assembly protein AFK25_09230 PF05140 ResB-like family AFK25_09235 PF00578 AhpC/TSA family AFK25_09240 PF00849 RNA pseudouridylate synthase AFK25_09240 PF01479 S4 domain AFK25_09245 PF07670 Nucleoside recognition AFK25_09250 PF07670 Nucleoside recognition AFK25_09255 PF07943 Penicillin-binding protein 5, C-terminal domain AFK25_09255 PF00768 D-alanyl-D-alanine carboxypeptidase AFK25_09260 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFK25_09260 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFK25_09280 PF13411 MerR HTH family regulatory protein AFK25_09285 PF01022 Bacterial regulatory protein, arsR family AFK25_09295 PF18603 L-amino acid ligase C-terminal domain 2 AFK25_09295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFK25_09305 PF01212 Beta-eliminating lyase AFK25_09315 PF04079 Segregation and condensation complex subunit ScpB AFK25_09320 PF02616 Segregation and condensation protein ScpA AFK25_09325 PF03745 Domain of unknown function (DUF309) AFK25_09330 PF00583 Acetyltransferase (GNAT) family AFK25_09335 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFK25_09340 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFK25_09340 PF00925 GTP cyclohydrolase II AFK25_09345 PF00677 Lumazine binding domain AFK25_09350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFK25_09350 PF01872 RibD C-terminal domain AFK25_09355 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFK25_09360 PF06207 Protein of unknown function (DUF1002) AFK25_09365 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFK25_09365 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFK25_09370 PF03323 Bacillus/Clostridium GerA spore germination protein AFK25_09375 PF14097 Stage V sporulation protein AE1 AFK25_09380 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AFK25_09385 PF07451 Stage V sporulation protein AD (SpoVAD) AFK25_09395 PF13782 Stage V sporulation protein AB AFK25_09400 PF12164 Stage V sporulation protein AA AFK25_09405 PF04539 Sigma-70 region 3 AFK25_09405 PF04542 Sigma-70 region 2 AFK25_09405 PF04545 Sigma-70, region 4 AFK25_09410 PF13581 Histidine kinase-like ATPase domain AFK25_09415 PF01740 STAS domain AFK25_09420 PF07943 Penicillin-binding protein 5, C-terminal domain AFK25_09420 PF00768 D-alanyl-D-alanine carboxypeptidase AFK25_09425 PF02885 Glycosyl transferase family, helical bundle domain AFK25_09425 PF00591 Glycosyl transferase family, a/b domain AFK25_09425 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AFK25_09430 PF01048 Phosphorylase superfamily AFK25_09435 PF01676 Metalloenzyme superfamily AFK25_09440 PF00589 Phage integrase family AFK25_09440 PF02899 Phage integrase, N-terminal SAM-like domain AFK25_09445 PF14004 Protein of unknown function (DUF4227) AFK25_09450 PF01475 Ferric uptake regulator family AFK25_09455 PF01944 Stage II sporulation protein M AFK25_09460 PF00293 NUDIX domain AFK25_09465 PF00248 Aldo/keto reductase family AFK25_09475 PF10827 Protein of unknown function (DUF2552) AFK25_09480 PF02665 Nitrate reductase gamma subunit AFK25_09485 PF02613 Nitrate reductase delta subunit AFK25_09490 PF13247 4Fe-4S dicluster domain AFK25_09490 PF14711 Respiratory nitrate reductase beta C-terminal AFK25_09495 PF14710 Respiratory nitrate reductase alpha N-terminal AFK25_09495 PF01568 Molydopterin dinucleotide binding domain AFK25_09495 PF00384 Molybdopterin oxidoreductase AFK25_09500 PF01814 Hemerythrin HHE cation binding domain AFK25_09500 PF04405 Domain of Unknown function (DUF542) AFK25_09505 PF00325 Bacterial regulatory proteins, crp family AFK25_09505 PF00027 Cyclic nucleotide-binding domain AFK25_09510 PF00899 ThiF family AFK25_09515 PF01967 MoaC family AFK25_09525 PF02391 MoaE protein AFK25_09530 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AFK25_09535 PF03454 MoeA C-terminal region (domain IV) AFK25_09535 PF03453 MoeA N-terminal region (domain I and II) AFK25_09535 PF00994 Probable molybdopterin binding domain AFK25_09540 PF12804 MobA-like NTP transferase domain AFK25_09545 PF00994 Probable molybdopterin binding domain AFK25_09550 PF04055 Radical SAM superfamily AFK25_09550 PF06463 Molybdenum Cofactor Synthesis C AFK25_09555 PF00005 ABC transporter AFK25_09555 PF17850 CysA C-terminal regulatory domain AFK25_09555 PF12857 TOBE-like domain AFK25_09560 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_09570 PF07690 Major Facilitator Superfamily AFK25_09575 PF07690 Major Facilitator Superfamily AFK25_09580 PF02335 Cytochrome c552 AFK25_09590 PF00578 AhpC/TSA family AFK25_09595 PF01578 Cytochrome C assembly protein AFK25_09605 PF00005 ABC transporter AFK25_09615 PF01578 Cytochrome C assembly protein AFK25_09615 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AFK25_09635 PF04055 Radical SAM superfamily AFK25_09635 PF13186 Iron-sulfur cluster-binding domain AFK25_09655 PF00106 short chain dehydrogenase AFK25_09660 PF00753 Metallo-beta-lactamase superfamily AFK25_09665 PF03807 NADP oxidoreductase coenzyme F420-dependent AFK25_09665 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFK25_09670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFK25_09680 PF00753 Metallo-beta-lactamase superfamily AFK25_09680 PF12706 Beta-lactamase superfamily domain AFK25_09685 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFK25_09685 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFK25_09690 PF04199 Putative cyclase AFK25_09695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFK25_09695 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFK25_09700 PF01584 CheW-like domain AFK25_09705 PF01546 Peptidase family M20/M25/M40 AFK25_09705 PF07687 Peptidase dimerisation domain AFK25_09710 PF01039 Carboxyl transferase domain AFK25_09720 PF03734 L,D-transpeptidase catalytic domain AFK25_09725 PF11728 Putative aromatic acid exporter C-terminal domain AFK25_09725 PF06081 Aromatic acid exporter family member 1 AFK25_09735 PF01642 Methylmalonyl-CoA mutase AFK25_09735 PF02310 B12 binding domain AFK25_09740 PF01642 Methylmalonyl-CoA mutase AFK25_09745 PF02817 e3 binding domain AFK25_09745 PF00364 Biotin-requiring enzyme AFK25_09745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFK25_09750 PF02779 Transketolase, pyrimidine binding domain AFK25_09750 PF02780 Transketolase, C-terminal domain AFK25_09755 PF00676 Dehydrogenase E1 component AFK25_09760 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_09760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFK25_09765 PF00871 Acetokinase family AFK25_09770 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFK25_09770 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFK25_09775 PF01515 Phosphate acetyl/butaryl transferase AFK25_09780 PF00989 PAS fold AFK25_09780 PF02954 Bacterial regulatory protein, Fis family AFK25_09780 PF00158 Sigma-54 interaction domain AFK25_09785 PF11118 Protein of unknown function (DUF2627) AFK25_09790 PF03009 Glycerophosphoryl diester phosphodiesterase family AFK25_09795 PF00072 Response regulator receiver domain AFK25_09795 PF08769 Sporulation initiation factor Spo0A C terminal AFK25_09800 PF05580 SpoIVB peptidase S55 AFK25_09800 PF17820 PDZ domain AFK25_09805 PF13476 AAA domain AFK25_09810 PF01316 Arginine repressor, DNA binding domain AFK25_09810 PF02863 Arginine repressor, C-terminal domain AFK25_09815 PF01479 S4 domain AFK25_09815 PF01728 FtsJ-like methyltransferase AFK25_09820 PF02779 Transketolase, pyrimidine binding domain AFK25_09820 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFK25_09820 PF02780 Transketolase, C-terminal domain AFK25_09825 PF00348 Polyprenyl synthetase AFK25_09830 PF02609 Exonuclease VII small subunit AFK25_09835 PF02601 Exonuclease VII, large subunit AFK25_09835 PF13742 OB-fold nucleic acid binding domain AFK25_09840 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFK25_09840 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFK25_09845 PF01029 NusB family AFK25_09850 PF03780 Asp23 family, cell envelope-related function AFK25_09855 PF02785 Biotin carboxylase C-terminal domain AFK25_09855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFK25_09855 PF00289 Biotin carboxylase, N-terminal domain AFK25_09860 PF00364 Biotin-requiring enzyme AFK25_09865 PF12685 SpoIIIAH-like protein AFK25_09875 PF09581 Stage III sporulation protein AF (Spore_III_AF) AFK25_09880 PF09546 Stage III sporulation protein AE (spore_III_AE) AFK25_09885 PF06686 Stage III sporulation protein AC/AD protein family AFK25_09890 PF06686 Stage III sporulation protein AC/AD protein family AFK25_09895 PF09548 Stage III sporulation protein AB (spore_III_AB) AFK25_09905 PF10942 Protein of unknown function (DUF2619) AFK25_09910 PF01132 Elongation factor P (EF-P) OB domain AFK25_09910 PF08207 Elongation factor P (EF-P) KOW-like domain AFK25_09910 PF09285 Elongation factor P, C-terminal AFK25_09915 PF01321 Creatinase/Prolidase N-terminal domain AFK25_09915 PF00557 Metallopeptidase family M24 AFK25_09920 PF01220 Dehydroquinase class II AFK25_09925 PF11085 Conserved membrane protein YqhR AFK25_09930 PF07136 Protein of unknown function (DUF1385) AFK25_09940 PF01734 Patatin-like phospholipase AFK25_09945 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFK25_09945 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFK25_09955 PF00317 Ribonucleotide reductase, all-alpha domain AFK25_09955 PF03477 ATP cone domain AFK25_09955 PF02867 Ribonucleotide reductase, barrel domain AFK25_09960 PF03099 Biotin/lipoate A/B protein ligase family AFK25_09965 PF00581 Rhodanese-like domain AFK25_09975 PF02347 Glycine cleavage system P-protein AFK25_09980 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFK25_09980 PF01571 Aminomethyltransferase folate-binding domain AFK25_09985 PF00271 Helicase conserved C-terminal domain AFK25_09985 PF00176 SNF2 family N-terminal domain AFK25_09990 PF11079 Bacterial protein YqhG of unknown function AFK25_09995 PF14038 YqzE-like protein AFK25_10000 PF01202 Shikimate kinase AFK25_10020 PF07963 Prokaryotic N-terminal methylation motif AFK25_10025 PF07963 Prokaryotic N-terminal methylation motif AFK25_10030 PF00482 Type II secretion system (T2SS), protein F AFK25_10035 PF00437 Type II/IV secretion system protein AFK25_10040 PF03960 ArsC family AFK25_10050 PF11117 Protein of unknown function (DUF2626) AFK25_10060 PF00753 Metallo-beta-lactamase superfamily AFK25_10070 PF01476 LysM domain AFK25_10070 PF00246 Zinc carboxypeptidase AFK25_10075 PF00884 Sulfatase AFK25_10080 PF00480 ROK family AFK25_10085 PF06014 Bacterial protein of unknown function (DUF910) AFK25_10090 PF03323 Bacillus/Clostridium GerA spore germination protein AFK25_10100 PF01694 Rhomboid family AFK25_10110 PF00056 lactate/malate dehydrogenase, NAD binding domain AFK25_10110 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFK25_10115 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFK25_10120 PF00471 Ribosomal protein L33 AFK25_10125 PF00483 Nucleotidyl transferase AFK25_10140 PF01895 PhoU domain AFK25_10145 PF00005 ABC transporter AFK25_10150 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_10155 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_10160 PF12849 PBP superfamily domain AFK25_10170 PF07690 Major Facilitator Superfamily AFK25_10175 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFK25_10175 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFK25_10185 PF06691 Protein of unknown function (DUF1189) AFK25_10190 PF02743 Cache domain AFK25_10190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_10190 PF00672 HAMP domain AFK25_10200 PF04551 GcpE protein AFK25_10215 PF01475 Ferric uptake regulator family AFK25_10220 PF00950 ABC 3 transport family AFK25_10225 PF00005 ABC transporter AFK25_10230 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AFK25_10230 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AFK25_10240 PF01261 Xylose isomerase-like TIM barrel AFK25_10245 PF00271 Helicase conserved C-terminal domain AFK25_10245 PF00270 DEAD/DEAH box helicase AFK25_10255 PF02401 LytB protein AFK25_10260 PF01784 NIF3 (NGG1p interacting factor 3) AFK25_10265 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AFK25_10270 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFK25_10280 PF04539 Sigma-70 region 3 AFK25_10280 PF00140 Sigma-70 factor, region 1.2 AFK25_10280 PF04545 Sigma-70, region 4 AFK25_10280 PF03979 Sigma-70 factor, region 1.1 AFK25_10280 PF04542 Sigma-70 region 2 AFK25_10285 PF01807 CHC2 zinc finger AFK25_10285 PF08275 DNA primase catalytic core, N-terminal domain AFK25_10285 PF10410 DnaB-helicase binding domain of primase AFK25_10290 PF03618 Kinase/pyrophosphorylase AFK25_10295 PF08279 HTH domain AFK25_10295 PF00571 CBS domain AFK25_10300 PF11967 Recombination protein O N terminal AFK25_10300 PF02565 Recombination protein O C terminal AFK25_10305 PF07650 KH domain AFK25_10305 PF01926 50S ribosome-binding GTPase AFK25_10310 PF01219 Prokaryotic diacylglycerol kinase AFK25_10315 PF02130 Uncharacterized protein family UPF0054 AFK25_10320 PF02562 PhoH-like protein AFK25_10325 PF06898 Putative stage IV sporulation protein YqfD AFK25_10330 PF07873 YabP family AFK25_10340 PF12127 SigmaW regulon antibacterial AFK25_10345 PF01972 Serine dehydrogenase proteinase AFK25_10345 PF01957 NfeD-like C-terminal, partner-binding AFK25_10350 PF09424 Yqey-like protein AFK25_10355 PF01165 Ribosomal protein S21 AFK25_10360 PF00919 Uncharacterized protein family UPF0004 AFK25_10360 PF04055 Radical SAM superfamily AFK25_10360 PF01938 TRAM domain AFK25_10365 PF04452 RNA methyltransferase AFK25_10375 PF00684 DnaJ central domain AFK25_10375 PF00226 DnaJ domain AFK25_10375 PF01556 DnaJ C terminal domain AFK25_10380 PF00012 Hsp70 protein AFK25_10385 PF01025 GrpE AFK25_10390 PF01628 HrcA protein C terminal domain AFK25_10395 PF06969 HemN C-terminal domain AFK25_10395 PF04055 Radical SAM superfamily AFK25_10400 PF00009 Elongation factor Tu GTP binding domain AFK25_10400 PF03144 Elongation factor Tu domain 2 AFK25_10400 PF06421 GTP-binding protein LepA C-terminus AFK25_10400 PF00679 Elongation factor G C-terminus AFK25_10410 PF07454 Stage II sporulation protein P (SpoIIP) AFK25_10415 PF03418 Germination protease AFK25_10420 PF01649 Ribosomal protein S20 AFK25_10425 PF13545 Crp-like helix-turn-helix domain AFK25_10425 PF00027 Cyclic nucleotide-binding domain AFK25_10430 PF06144 DNA polymerase III, delta subunit AFK25_10435 PF14141 YqzM-like protein AFK25_10440 PF13567 Domain of unknown function (DUF4131) AFK25_10440 PF03772 Competence protein AFK25_10440 PF00753 Metallo-beta-lactamase superfamily AFK25_10445 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFK25_10450 PF10531 SLBB domain AFK25_10455 PF03807 NADP oxidoreductase coenzyme F420-dependent AFK25_10455 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFK25_10460 PF13649 Methyltransferase domain AFK25_10470 PF01966 HD domain AFK25_10475 PF01467 Cytidylyltransferase-like AFK25_10480 PF01985 CRS1 / YhbY (CRM) domain AFK25_10485 PF08501 Shikimate dehydrogenase substrate binding domain AFK25_10485 PF01488 Shikimate / quinate 5-dehydrogenase AFK25_10485 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFK25_10490 PF01926 50S ribosome-binding GTPase AFK25_10500 PF08970 Sporulation inhibitor A AFK25_10505 PF02666 Phosphatidylserine decarboxylase AFK25_10510 PF01066 CDP-alcohol phosphatidyltransferase AFK25_10515 PF01618 MotA/TolQ/ExbB proton channel family AFK25_10520 PF00691 OmpA family AFK25_10520 PF13677 Membrane MotB of proton-channel complex MotA/MotB AFK25_10525 PF02386 Cation transport protein AFK25_10530 PF04545 Sigma-70, region 4 AFK25_10530 PF04542 Sigma-70 region 2 AFK25_10540 PF09827 CRISPR associated protein Cas2 AFK25_10545 PF01867 CRISPR associated protein Cas1 AFK25_10555 PF00270 DEAD/DEAH box helicase AFK25_10555 PF18019 HD domain AFK25_10555 PF18395 Cas3 C-terminal domain AFK25_10580 PF01695 IstB-like ATP binding protein AFK25_10585 PF00665 Integrase core domain AFK25_10585 PF02796 Helix-turn-helix domain of resolvase AFK25_10595 PF00565 Staphylococcal nuclease homologue AFK25_10605 PF01053 Cys/Met metabolism PLP-dependent enzyme AFK25_10610 PF00291 Pyridoxal-phosphate dependent enzyme AFK25_10615 PF01048 Phosphorylase superfamily AFK25_10620 PF13649 Methyltransferase domain AFK25_10625 PF10750 Protein of unknown function (DUF2536) AFK25_10630 PF07423 Domain of unknown function (DUF1510) AFK25_10635 PF00905 Penicillin binding protein transpeptidase domain AFK25_10635 PF03717 Penicillin-binding Protein dimerisation domain AFK25_10640 PF03449 Transcription elongation factor, N-terminal AFK25_10640 PF01272 Transcription elongation factor, GreA/GreB, C-term AFK25_10645 PF00485 Phosphoribulokinase / Uridine kinase family AFK25_10665 PF02618 YceG-like family AFK25_10670 PF06949 Protein of unknown function (DUF1292) AFK25_10675 PF03652 Holliday junction resolvase AFK25_10680 PF06135 IreB regulatory phosphoprotein AFK25_10685 PF01411 tRNA synthetases class II (A) AFK25_10685 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFK25_10685 PF02272 DHHA1 domain AFK25_10690 PF01594 AI-2E family transporter AFK25_10700 PF14490 Helix-hairpin-helix containing domain AFK25_10700 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AFK25_10700 PF13538 UvrD-like helicase C-terminal domain AFK25_10715 PF00266 Aminotransferase class-V AFK25_10720 PF02082 Transcriptional regulator AFK25_10725 PF12002 MgsA AAA+ ATPase C terminal AFK25_10725 PF16193 AAA C-terminal domain AFK25_10725 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFK25_10730 PF00440 Bacterial regulatory proteins, tetR family AFK25_10735 PF00873 AcrB/AcrD/AcrF family AFK25_10740 PF00899 ThiF family AFK25_10745 PF01336 OB-fold nucleic acid binding domain AFK25_10745 PF02938 GAD domain AFK25_10745 PF00152 tRNA synthetases class II (D, K and N) AFK25_10750 PF03129 Anticodon binding domain AFK25_10750 PF13393 Histidyl-tRNA synthetase AFK25_10755 PF01520 N-acetylmuramoyl-L-alanine amidase AFK25_10755 PF08239 Bacterial SH3 domain AFK25_10765 PF02580 D-Tyr-tRNA(Tyr) deacylase AFK25_10770 PF04607 Region found in RelA / SpoT proteins AFK25_10770 PF02824 TGS domain AFK25_10770 PF13291 ACT domain AFK25_10775 PF00156 Phosphoribosyl transferase domain AFK25_10780 PF17768 RecJ OB domain AFK25_10780 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AFK25_10780 PF02272 DHHA1 domain AFK25_10780 PF01368 DHH family AFK25_10785 PF01545 Cation efflux family AFK25_10785 PF16916 Dimerisation domain of Zinc Transporter AFK25_10790 PF07549 SecD/SecF GG Motif AFK25_10790 PF02355 Protein export membrane protein AFK25_10795 PF13797 Post-transcriptional regulator AFK25_10800 PF01943 Polysaccharide biosynthesis protein AFK25_10800 PF14667 Polysaccharide biosynthesis C-terminal domain AFK25_10805 PF04239 Protein of unknown function (DUF421) AFK25_10810 PF12670 Protein of unknown function (DUF3792) AFK25_10815 PF02699 Preprotein translocase subunit AFK25_10820 PF01702 Queuine tRNA-ribosyltransferase AFK25_10825 PF02547 Queuosine biosynthesis protein AFK25_10830 PF11146 Protein of unknown function (DUF2905) AFK25_10835 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFK25_10835 PF17864 RuvB AAA lid domain AFK25_10835 PF05491 RuvB C-terminal winged helix domain AFK25_10840 PF07499 RuvA, C-terminal domain AFK25_10840 PF01330 RuvA N terminal domain AFK25_10845 PF08977 Bypass of Forespore C, N terminal AFK25_10845 PF08955 BofC C-terminal domain AFK25_10850 PF01709 Transcriptional regulator AFK25_10855 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AFK25_10860 PF02540 NAD synthase AFK25_10865 PF13333 Integrase core domain AFK25_10865 PF00665 Integrase core domain AFK25_10865 PF13276 HTH-like domain AFK25_10870 PF01476 LysM domain AFK25_10875 PF02445 Quinolinate synthetase A protein AFK25_10880 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFK25_10880 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFK25_10885 PF02910 Fumarate reductase flavoprotein C-term AFK25_10885 PF00890 FAD binding domain AFK25_10890 PF00266 Aminotransferase class-V AFK25_10895 PF08279 HTH domain AFK25_10895 PF02829 3H domain AFK25_10900 PF00800 Prephenate dehydratase AFK25_10900 PF01842 ACT domain AFK25_10905 PF01842 ACT domain AFK25_10910 PF01926 50S ribosome-binding GTPase AFK25_10910 PF09269 Domain of unknown function (DUF1967) AFK25_10910 PF01018 GTP1/OBG AFK25_10915 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFK25_10915 PF14682 Sporulation initiation phospho-transferase B, C-terminal AFK25_10920 PF01016 Ribosomal L27 protein AFK25_10925 PF04327 Cysteine protease Prp AFK25_10930 PF00829 Ribosomal prokaryotic L21 protein AFK25_10935 PF02163 Peptidase family M50 AFK25_10940 PF01551 Peptidase family M23 AFK25_10945 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFK25_10950 PF03775 Septum formation inhibitor MinC, C-terminal domain AFK25_10960 PF04085 rod shape-determining protein MreC AFK25_10970 PF04002 RadC-like JAB domain AFK25_10975 PF02545 Maf-like protein AFK25_11005 PF06750 Bacterial Peptidase A24 N-terminal domain AFK25_11005 PF01478 Type IV leader peptidase family AFK25_11010 PF00114 Pilin (bacterial filament) AFK25_11010 PF07963 Prokaryotic N-terminal methylation motif AFK25_11015 PF00482 Type II secretion system (T2SS), protein F AFK25_11020 PF00437 Type II/IV secretion system protein AFK25_11025 PF00437 Type II/IV secretion system protein AFK25_11065 PF02368 Bacterial Ig-like domain (group 2) AFK25_11070 PF08245 Mur ligase middle domain AFK25_11070 PF02875 Mur ligase family, glutamate ligase domain AFK25_11075 PF08264 Anticodon-binding domain of tRNA AFK25_11075 PF00133 tRNA synthetases class I (I, L, M and V) AFK25_11075 PF10458 Valyl tRNA synthetase tRNA binding arm AFK25_11090 PF01476 LysM domain AFK25_11090 PF01476 LysM domain AFK25_11095 PF00202 Aminotransferase class-III AFK25_11100 PF00490 Delta-aminolevulinic acid dehydratase AFK25_11105 PF02602 Uroporphyrinogen-III synthase HemD AFK25_11110 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFK25_11110 PF03900 Porphobilinogen deaminase, C-terminal domain AFK25_11115 PF01578 Cytochrome C assembly protein AFK25_11120 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFK25_11120 PF01488 Shikimate / quinate 5-dehydrogenase AFK25_11120 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFK25_11130 PF01926 50S ribosome-binding GTPase AFK25_11135 PF05362 Lon protease (S16) C-terminal proteolytic domain AFK25_11135 PF02190 ATP-dependent protease La (LON) substrate-binding domain AFK25_11135 PF00004 ATPase family associated with various cellular activities (AAA) AFK25_11140 PF00004 ATPase family associated with various cellular activities (AAA) AFK25_11140 PF05362 Lon protease (S16) C-terminal proteolytic domain AFK25_11145 PF10431 C-terminal, D2-small domain, of ClpB protein AFK25_11145 PF06689 ClpX C4-type zinc finger AFK25_11145 PF07724 AAA domain (Cdc48 subfamily) AFK25_11150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFK25_11150 PF05698 Bacterial trigger factor protein (TF) C-terminus AFK25_11150 PF05697 Bacterial trigger factor protein (TF) AFK25_11160 PF00694 Aconitase C-terminal domain AFK25_11165 PF00330 Aconitase family (aconitate hydratase) AFK25_11170 PF00180 Isocitrate/isopropylmalate dehydrogenase AFK25_11175 PF00682 HMGL-like AFK25_11175 PF08502 LeuA allosteric (dimerisation) domain AFK25_11180 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AFK25_11180 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFK25_11185 PF10369 Small subunit of acetolactate synthase AFK25_11185 PF01842 ACT domain AFK25_11190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFK25_11190 PF00205 Thiamine pyrophosphate enzyme, central domain AFK25_11190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFK25_11195 PF01063 Amino-transferase class IV AFK25_11205 PF12850 Calcineurin-like phosphoesterase superfamily domain AFK25_11210 PF01725 Ham1 family AFK25_11215 PF03725 3' exoribonuclease family, domain 2 AFK25_11215 PF01138 3' exoribonuclease family, domain 1 AFK25_11220 PF10646 Sporulation and spore germination AFK25_11225 PF01177 Asp/Glu/Hydantoin racemase AFK25_11230 PF00196 Bacterial regulatory proteins, luxR family AFK25_11235 PF03061 Thioesterase superfamily AFK25_11240 PF13085 2Fe-2S iron-sulfur cluster binding domain AFK25_11240 PF13183 4Fe-4S dicluster domain AFK25_11245 PF00890 FAD binding domain AFK25_11245 PF02910 Fumarate reductase flavoprotein C-term AFK25_11250 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFK25_11255 PF10702 Protein of unknown function (DUF2507) AFK25_11260 PF08459 UvrC Helix-hairpin-helix N-terminal AFK25_11260 PF02151 UvrB/uvrC motif AFK25_11260 PF01541 GIY-YIG catalytic domain AFK25_11280 PF00535 Glycosyl transferase family 2 AFK25_11295 PF01370 NAD dependent epimerase/dehydratase family AFK25_11305 PF00085 Thioredoxin AFK25_11310 PF01012 Electron transfer flavoprotein domain AFK25_11310 PF00766 Electron transfer flavoprotein FAD-binding domain AFK25_11315 PF01012 Electron transfer flavoprotein domain AFK25_11320 PF00378 Enoyl-CoA hydratase/isomerase AFK25_11325 PF00440 Bacterial regulatory proteins, tetR family AFK25_11325 PF08359 YsiA-like protein, C-terminal region AFK25_11330 PF13193 AMP-binding enzyme C-terminal domain AFK25_11330 PF00501 AMP-binding enzyme AFK25_11335 PF03994 Domain of Unknown Function (DUF350) AFK25_11340 PF01713 Smr domain AFK25_11340 PF00488 MutS domain V AFK25_11345 PF02811 PHP domain AFK25_11345 PF14716 Helix-hairpin-helix domain AFK25_11345 PF14791 DNA polymerase beta thumb AFK25_11350 PF02674 Colicin V production protein AFK25_11355 PF05164 Cell division protein ZapA AFK25_11360 PF03176 MMPL family AFK25_11370 PF01588 Putative tRNA binding domain AFK25_11370 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AFK25_11370 PF03484 tRNA synthetase B5 domain AFK25_11370 PF03147 Ferredoxin-fold anticodon binding domain AFK25_11370 PF03483 B3/4 domain AFK25_11375 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFK25_11375 PF01409 tRNA synthetases class II core domain (F) AFK25_11380 PF00588 SpoU rRNA Methylase family AFK25_11380 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFK25_11385 PF01625 Peptide methionine sulfoxide reductase AFK25_11390 PF14098 Small, acid-soluble spore protein I AFK25_11395 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFK25_11395 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFK25_11400 PF01261 Xylose isomerase-like TIM barrel AFK25_11405 PF04854 Protein of unknown function, DUF624 AFK25_11410 PF03512 Glycosyl hydrolase family 52 AFK25_11415 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_11420 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_11425 PF01547 Bacterial extracellular solute-binding protein AFK25_11430 PF12833 Helix-turn-helix domain AFK25_11430 PF17853 GGDEF-like domain AFK25_11435 PF02743 Cache domain AFK25_11435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_11435 PF06580 Histidine kinase AFK25_11435 PF00672 HAMP domain AFK25_11440 PF00480 ROK family AFK25_11445 PF00248 Aldo/keto reductase family AFK25_11450 PF01263 Aldose 1-epimerase AFK25_11455 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFK25_11455 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFK25_11465 PF02449 Beta-galactosidase AFK25_11465 PF08533 Beta-galactosidase C-terminal domain AFK25_11465 PF08532 Beta-galactosidase trimerisation domain AFK25_11470 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AFK25_11470 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AFK25_11475 PF16363 GDP-mannose 4,6 dehydratase AFK25_11480 PF10509 Galactokinase galactose-binding signature AFK25_11480 PF00288 GHMP kinases N terminal domain AFK25_11480 PF08544 GHMP kinases C terminal AFK25_11485 PF16875 Glycosyl hydrolase family 36 N-terminal domain AFK25_11485 PF16874 Glycosyl hydrolase family 36 C-terminal domain AFK25_11490 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_11495 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_11500 PF13416 Bacterial extracellular solute-binding protein AFK25_11505 PF05343 M42 glutamyl aminopeptidase AFK25_11515 PF00453 Ribosomal protein L20 AFK25_11520 PF01632 Ribosomal protein L35 AFK25_11525 PF05198 Translation initiation factor IF-3, N-terminal domain AFK25_11525 PF00707 Translation initiation factor IF-3, C-terminal domain AFK25_11530 PF03129 Anticodon binding domain AFK25_11530 PF02824 TGS domain AFK25_11530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFK25_11530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFK25_11535 PF08812 YtxC-like family AFK25_11540 PF07319 Primosomal protein DnaI N-terminus AFK25_11540 PF01695 IstB-like ATP binding protein AFK25_11545 PF07261 Replication initiation and membrane attachment AFK25_11550 PF03477 ATP cone domain AFK25_11560 PF02675 S-adenosylmethionine decarboxylase AFK25_11565 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFK25_11565 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFK25_11570 PF01121 Dephospho-CoA kinase AFK25_11575 PF02659 Putative manganese efflux pump AFK25_11580 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFK25_11580 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFK25_11580 PF06827 Zinc finger found in FPG and IleRS AFK25_11585 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFK25_11585 PF00476 DNA polymerase family A AFK25_11585 PF01367 5'-3' exonuclease, C-terminal SAM fold AFK25_11590 PF00512 His Kinase A (phospho-acceptor) domain AFK25_11590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_11590 PF00989 PAS fold AFK25_11590 PF16736 Single Cache-like AFK25_11595 PF00486 Transcriptional regulatory protein, C terminal AFK25_11595 PF00072 Response regulator receiver domain AFK25_11605 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFK25_11605 PF00056 lactate/malate dehydrogenase, NAD binding domain AFK25_11610 PF00180 Isocitrate/isopropylmalate dehydrogenase AFK25_11615 PF00285 Citrate synthase, C-terminal domain AFK25_11620 PF04284 Protein of unknown function (DUF441) AFK25_11625 PF01594 AI-2E family transporter AFK25_11630 PF04186 FxsA cytoplasmic membrane protein AFK25_11635 PF00391 PEP-utilising enzyme, mobile domain AFK25_11635 PF02887 Pyruvate kinase, alpha/beta domain AFK25_11635 PF00224 Pyruvate kinase, barrel domain AFK25_11640 PF00365 Phosphofructokinase AFK25_11645 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AFK25_11650 PF17848 Acetyl-coA carboxylase zinc finger domain AFK25_11650 PF01039 Carboxyl transferase domain AFK25_11655 PF00392 Bacterial regulatory proteins, gntR family AFK25_11660 PF03949 Malic enzyme, NAD binding domain AFK25_11660 PF00390 Malic enzyme, N-terminal domain AFK25_11665 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFK25_11665 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFK25_11665 PF14579 Helix-hairpin-helix motif AFK25_11665 PF02811 PHP domain AFK25_11665 PF01336 OB-fold nucleic acid binding domain AFK25_11670 PF14034 Sporulation protein YtrH AFK25_11680 PF01368 DHH family AFK25_11680 PF02272 DHHA1 domain AFK25_11685 PF14007 YtpI-like protein AFK25_11690 PF07085 DRTGG domain AFK25_11690 PF00392 Bacterial regulatory proteins, gntR family AFK25_11690 PF03061 Thioesterase superfamily AFK25_11690 PF00571 CBS domain AFK25_11700 PF01321 Creatinase/Prolidase N-terminal domain AFK25_11700 PF00557 Metallopeptidase family M24 AFK25_11710 PF00582 Universal stress protein family AFK25_11715 PF00206 Lyase AFK25_11715 PF14698 Argininosuccinate lyase C-terminal AFK25_11720 PF00764 Arginosuccinate synthase AFK25_11730 PF00871 Acetokinase family AFK25_11735 PF02384 N-6 DNA Methylase AFK25_11740 PF08534 Redoxin AFK25_11745 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AFK25_11755 PF01513 ATP-NAD kinase AFK25_11765 PF00005 ABC transporter AFK25_11770 PF13458 Periplasmic binding protein AFK25_11780 PF02653 Branched-chain amino acid transport system / permease component AFK25_11785 PF00501 AMP-binding enzyme AFK25_11790 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFK25_11790 PF00005 ABC transporter AFK25_11795 PF13193 AMP-binding enzyme C-terminal domain AFK25_11795 PF00501 AMP-binding enzyme AFK25_11800 PF00269 Small, acid-soluble spore proteins, alpha/beta type AFK25_11805 PF02568 Thiamine biosynthesis protein (ThiI) AFK25_11805 PF02926 THUMP domain AFK25_11810 PF00266 Aminotransferase class-V AFK25_11815 PF05525 Branched-chain amino acid transport protein AFK25_11820 PF06160 Septation ring formation regulator, EzrA AFK25_11825 PF02811 PHP domain AFK25_11830 PF13185 GAF domain AFK25_11835 PF00990 Diguanylate cyclase, GGDEF domain AFK25_11840 PF00163 Ribosomal protein S4/S9 N-terminal domain AFK25_11840 PF01479 S4 domain AFK25_11845 PF00579 tRNA synthetases class I (W and Y) AFK25_11845 PF01479 S4 domain AFK25_11850 PF00912 Transglycosylase AFK25_11850 PF00905 Penicillin binding protein transpeptidase domain AFK25_11855 PF13193 AMP-binding enzyme C-terminal domain AFK25_11855 PF00501 AMP-binding enzyme AFK25_11860 PF00583 Acetyltransferase (GNAT) family AFK25_11865 PF00571 CBS domain AFK25_11870 PF00850 Histone deacetylase domain AFK25_11875 PF00356 Bacterial regulatory proteins, lacI family AFK25_11880 PF01817 Chorismate mutase type II AFK25_11880 PF00793 DAHP synthetase I family AFK25_11885 PF02491 SHS2 domain inserted in FTSA AFK25_11890 PF02073 Thermophilic metalloprotease (M29) AFK25_11895 PF06103 Bacterial protein of unknown function (DUF948) AFK25_11910 PF01225 Mur ligase family, catalytic domain AFK25_11910 PF08245 Mur ligase middle domain AFK25_11910 PF02875 Mur ligase family, glutamate ligase domain AFK25_11920 PF09397 Ftsk gamma domain AFK25_11920 PF17854 FtsK alpha domain AFK25_11920 PF01580 FtsK/SpoIIIE family AFK25_11920 PF09397 Ftsk gamma domain AFK25_11920 PF01580 FtsK/SpoIIIE family AFK25_11920 PF17854 FtsK alpha domain AFK25_11925 PF14794 Domain of unknown function (DUF4479) AFK25_11925 PF01588 Putative tRNA binding domain AFK25_11930 PF07285 Protein of unknown function (DUF1444) AFK25_11935 PF00085 Thioredoxin AFK25_11940 PF01931 Protein of unknown function DUF84 AFK25_11945 PF05343 M42 glutamyl aminopeptidase AFK25_11955 PF00753 Metallo-beta-lactamase superfamily AFK25_11960 PF02390 Putative methyltransferase AFK25_11965 PF14165 YtzH-like protein AFK25_11970 PF01636 Phosphotransferase enzyme family AFK25_11975 PF17999 Pullulanase N1-terminal domain AFK25_11975 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFK25_11975 PF00128 Alpha amylase, catalytic domain AFK25_11990 PF04172 LrgB-like family AFK25_11995 PF03788 LrgA family AFK25_12000 PF02834 LigT like Phosphoesterase AFK25_12005 PF12832 MFS_1 like family AFK25_12010 PF01546 Peptidase family M20/M25/M40 AFK25_12015 PF08220 DeoR-like helix-turn-helix domain AFK25_12020 PF00849 RNA pseudouridylate synthase AFK25_12020 PF01479 S4 domain AFK25_12030 PF14667 Polysaccharide biosynthesis C-terminal domain AFK25_12030 PF01943 Polysaccharide biosynthesis protein AFK25_12040 PF00581 Rhodanese-like domain AFK25_12045 PF00133 tRNA synthetases class I (I, L, M and V) AFK25_12045 PF13603 Leucyl-tRNA synthetase, Domain 2 AFK25_12045 PF08264 Anticodon-binding domain of tRNA AFK25_12045 PF09334 tRNA synthetases class I (M) AFK25_12050 PF10732 Protein of unknown function (DUF2524) AFK25_12055 PF04055 Radical SAM superfamily AFK25_12055 PF16199 Radical_SAM C-terminal domain AFK25_12060 PF06962 Putative rRNA methylase AFK25_12070 PF10776 Protein of unknown function (DUF2600) AFK25_12075 PF12146 Serine aminopeptidase, S33 AFK25_12080 PF00132 Bacterial transferase hexapeptide (six repeats) AFK25_12085 PF01569 PAP2 superfamily AFK25_12090 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFK25_12090 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFK25_12090 PF02772 S-adenosylmethionine synthetase, central domain AFK25_12095 PF01293 Phosphoenolpyruvate carboxykinase AFK25_12130 PF01891 Cobalt uptake substrate-specific transmembrane region AFK25_12130 PF13190 PDGLE domain AFK25_12135 PF02361 Cobalt transport protein AFK25_12140 PF00005 ABC transporter AFK25_12150 PF10763 Protein of unknown function (DUF2584) AFK25_12160 PF00005 ABC transporter AFK25_12165 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_12170 PF00293 NUDIX domain AFK25_12180 PF00210 Ferritin-like domain AFK25_12185 PF02664 S-Ribosylhomocysteinase (LuxS) AFK25_12190 PF01809 Putative membrane protein insertion efficiency factor AFK25_12195 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFK25_12195 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFK25_12200 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AFK25_12200 PF01297 Zinc-uptake complex component A periplasmic AFK25_12205 PF01654 Cytochrome bd terminal oxidase subunit I AFK25_12210 PF02322 Cytochrome bd terminal oxidase subunit II AFK25_12215 PF02867 Ribonucleotide reductase, barrel domain AFK25_12215 PF00317 Ribonucleotide reductase, all-alpha domain AFK25_12215 PF03477 ATP cone domain AFK25_12220 PF00258 Flavodoxin AFK25_12225 PF00268 Ribonucleotide reductase, small chain AFK25_12250 PF01654 Cytochrome bd terminal oxidase subunit I AFK25_12255 PF02322 Cytochrome bd terminal oxidase subunit II AFK25_12260 PF13193 AMP-binding enzyme C-terminal domain AFK25_12260 PF00501 AMP-binding enzyme AFK25_12265 PF00378 Enoyl-CoA hydratase/isomerase AFK25_12270 PF00561 alpha/beta hydrolase fold AFK25_12275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFK25_12275 PF16582 Middle domain of thiamine pyrophosphate AFK25_12275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFK25_12280 PF00425 chorismate binding enzyme AFK25_12285 PF01040 UbiA prenyltransferase family AFK25_12290 PF01258 Prokaryotic dksA/traR C4-type zinc finger AFK25_12295 PF00343 Carbohydrate phosphorylase AFK25_12300 PF00534 Glycosyl transferases group 1 AFK25_12300 PF08323 Starch synthase catalytic domain AFK25_12305 PF00483 Nucleotidyl transferase AFK25_12310 PF00483 Nucleotidyl transferase AFK25_12315 PF00128 Alpha amylase, catalytic domain AFK25_12315 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFK25_12315 PF02806 Alpha amylase, C-terminal all-beta domain AFK25_12320 PF16916 Dimerisation domain of Zinc Transporter AFK25_12320 PF01545 Cation efflux family AFK25_12400 PF05698 Bacterial trigger factor protein (TF) C-terminus AFK25_12400 PF05697 Bacterial trigger factor protein (TF) AFK25_12455 PF02308 MgtC family AFK25_12470 PF08141 Small acid-soluble spore protein H family AFK25_12475 PF07885 Ion channel AFK25_12475 PF02254 TrkA-N domain AFK25_12480 PF08868 YugN-like family AFK25_12485 PF00342 Phosphoglucose isomerase AFK25_12490 PF00465 Iron-containing alcohol dehydrogenase AFK25_12495 PF04070 Domain of unknown function (DUF378) AFK25_12500 PF00575 S1 RNA binding domain AFK25_12510 PF00155 Aminotransferase class I and II AFK25_12515 PF01037 Lrp/AsnC ligand binding domain AFK25_12520 PF00080 Copper/zinc superoxide dismutase (SODC) AFK25_12535 PF03600 Citrate transporter AFK25_12545 PF02632 BioY family AFK25_12550 PF06725 3D domain AFK25_12555 PF14068 Putative membrane protein AFK25_12560 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_12565 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_12570 PF13276 HTH-like domain AFK25_12570 PF00665 Integrase core domain AFK25_12570 PF13333 Integrase core domain AFK25_12575 PF01521 Iron-sulphur cluster biosynthesis AFK25_12580 PF01678 Diaminopimelate epimerase AFK25_12590 PF07293 Protein of unknown function (DUF1450) AFK25_12595 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_12605 PF07315 Protein of unknown function (DUF1462) AFK25_12610 PF01106 NifU-like domain AFK25_12615 PF00288 GHMP kinases N terminal domain AFK25_12615 PF08544 GHMP kinases C terminal AFK25_12620 PF00291 Pyridoxal-phosphate dependent enzyme AFK25_12625 PF00742 Homoserine dehydrogenase AFK25_12625 PF03447 Homoserine dehydrogenase, NAD binding domain AFK25_12625 PF01842 ACT domain AFK25_12630 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFK25_12630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFK25_12640 PF04608 Phosphatidylglycerophosphatase A AFK25_12645 PF13344 Haloacid dehalogenase-like hydrolase AFK25_12655 PF01934 Protein of unknown function DUF86 AFK25_12670 PF06265 Protein of unknown function (DUF1027) AFK25_12675 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AFK25_12680 PF04055 Radical SAM superfamily AFK25_12680 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AFK25_12685 PF01551 Peptidase family M23 AFK25_12690 PF00209 Sodium:neurotransmitter symporter family AFK25_12695 PF09560 Sporulation protein YunB (Spo_YunB) AFK25_12700 PF08827 Domain of unknown function (DUF1805) AFK25_12705 PF02872 5'-nucleotidase, C-terminal domain AFK25_12710 PF01925 Sulfite exporter TauE/SafE AFK25_12715 PF01904 Protein of unknown function DUF72 AFK25_12720 PF01458 Uncharacterized protein family (UPF0051) AFK25_12725 PF01592 NifU-like N terminal domain AFK25_12730 PF00266 Aminotransferase class-V AFK25_12735 PF01458 Uncharacterized protein family (UPF0051) AFK25_12740 PF00005 ABC transporter AFK25_12745 PF02627 Carboxymuconolactone decarboxylase family AFK25_12750 PF03180 NLPA lipoprotein AFK25_12755 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_12760 PF00005 ABC transporter AFK25_12760 PF09383 NIL domain AFK25_12765 PF01053 Cys/Met metabolism PLP-dependent enzyme AFK25_12775 PF00085 Thioredoxin AFK25_12780 PF01751 Toprim domain AFK25_12790 PF01597 Glycine cleavage H-protein AFK25_12795 PF03960 ArsC family AFK25_12800 PF02770 Acyl-CoA dehydrogenase, middle domain AFK25_12800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFK25_12800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFK25_12805 PF02803 Thiolase, C-terminal domain AFK25_12805 PF00108 Thiolase, N-terminal domain AFK25_12810 PF00378 Enoyl-CoA hydratase/isomerase AFK25_12810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFK25_12810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFK25_12815 PF01619 Proline dehydrogenase AFK25_12825 PF07875 Coat F domain AFK25_12830 PF03992 Antibiotic biosynthesis monooxygenase AFK25_12840 PF10615 Protein of unknown function (DUF2470) AFK25_12840 PF01243 Pyridoxamine 5'-phosphate oxidase AFK25_12845 PF00005 ABC transporter AFK25_12850 PF01032 FecCD transport family AFK25_12855 PF01497 Periplasmic binding protein AFK25_12860 PF01668 SmpB protein AFK25_12865 PF08206 Ribonuclease B OB domain AFK25_12865 PF00575 S1 RNA binding domain AFK25_12865 PF00773 RNB domain AFK25_12865 PF17876 Cold shock domain AFK25_12870 PF12146 Serine aminopeptidase, S33 AFK25_12875 PF03840 Preprotein translocase SecG subunit AFK25_12880 PF00113 Enolase, C-terminal TIM barrel domain AFK25_12880 PF03952 Enolase, N-terminal domain AFK25_12895 PF00113 Enolase, C-terminal TIM barrel domain AFK25_12895 PF03952 Enolase, N-terminal domain AFK25_12900 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AFK25_12900 PF01676 Metalloenzyme superfamily AFK25_12905 PF00121 Triosephosphate isomerase AFK25_12910 PF00162 Phosphoglycerate kinase AFK25_12915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFK25_12915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFK25_12920 PF04198 Putative sugar-binding domain AFK25_12930 PF04963 Sigma-54 factor, core binding domain AFK25_12930 PF00309 Sigma-54 factor, Activator interacting domain (AID) AFK25_12930 PF04552 Sigma-54, DNA binding domain AFK25_12940 PF00574 Clp protease AFK25_12945 PF00381 PTS HPr component phosphorylation site AFK25_12950 PF14527 WhiA LAGLIDADG-like domain AFK25_12950 PF02650 WhiA C-terminal HTH domain AFK25_12950 PF10298 WhiA N-terminal LAGLIDADG-like domain AFK25_12955 PF01933 Uncharacterised protein family UPF0052 AFK25_12960 PF03668 P-loop ATPase protein family AFK25_12965 PF00293 NUDIX domain AFK25_12970 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_12980 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFK25_12980 PF01502 Phosphoribosyl-AMP cyclohydrolase AFK25_12985 PF00977 Histidine biosynthesis protein AFK25_12990 PF00977 Histidine biosynthesis protein AFK25_12995 PF00117 Glutamine amidotransferase class-I AFK25_13000 PF00475 Imidazoleglycerol-phosphate dehydratase AFK25_13005 PF00815 Histidinol dehydrogenase AFK25_13010 PF01634 ATP phosphoribosyltransferase AFK25_13015 PF13393 Histidyl-tRNA synthetase AFK25_13020 PF14602 Hexapeptide repeat of succinyl-transferase AFK25_13025 PF13419 Haloacid dehalogenase-like hydrolase AFK25_13030 PF07670 Nucleoside recognition AFK25_13035 PF01790 Prolipoprotein diacylglyceryl transferase AFK25_13040 PF07475 HPr Serine kinase C-terminal domain AFK25_13040 PF02603 HPr Serine kinase N terminus AFK25_13045 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AFK25_13060 PF00005 ABC transporter AFK25_13060 PF17755 UvrA DNA-binding domain AFK25_13060 PF17760 UvrA interaction domain AFK25_13065 PF12344 Ultra-violet resistance protein B AFK25_13065 PF02151 UvrB/uvrC motif AFK25_13065 PF04851 Type III restriction enzyme, res subunit AFK25_13065 PF00271 Helicase conserved C-terminal domain AFK25_13065 PF17757 UvrB interaction domain AFK25_13070 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) AFK25_13075 PF17820 PDZ domain AFK25_13080 PF13411 MerR HTH family regulatory protein AFK25_13085 PF17820 PDZ domain AFK25_13085 PF03572 Peptidase family S41 AFK25_13085 PF01471 Putative peptidoglycan binding domain AFK25_13090 PF01551 Peptidase family M23 AFK25_13090 PF08525 Opacity-associated protein A N-terminal motif AFK25_13090 PF01476 LysM domain AFK25_13095 PF18075 FtsX extracellular domain AFK25_13095 PF02687 FtsX-like permease family AFK25_13100 PF00005 ABC transporter AFK25_13105 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFK25_13110 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AFK25_13110 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AFK25_13125 PF00472 RF-1 domain AFK25_13125 PF03462 PCRF domain AFK25_13130 PF07516 SecA Wing and Scaffold domain AFK25_13130 PF01043 SecA preprotein cross-linking domain AFK25_13130 PF07517 SecA DEAD-like domain AFK25_13130 PF02810 SEC-C motif AFK25_13140 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AFK25_13140 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFK25_13150 PF02561 Flagellar protein FliS AFK25_13155 PF07196 Flagellin hook IN motif AFK25_13155 PF02465 Flagellar hook-associated protein 2 N-terminus AFK25_13155 PF07195 Flagellar hook-associated protein 2 C-terminus AFK25_13165 PF00700 Bacterial flagellin C-terminal helical region AFK25_13165 PF00669 Bacterial flagellin N-terminal helical region AFK25_13170 PF03102 NeuB family AFK25_13170 PF08666 SAF domain AFK25_13195 PF02348 Cytidylyltransferase AFK25_13200 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFK25_13205 PF02719 Polysaccharide biosynthesis protein AFK25_13220 PF00669 Bacterial flagellin N-terminal helical region AFK25_13220 PF00700 Bacterial flagellin C-terminal helical region AFK25_13225 PF02599 Global regulator protein family AFK25_13230 PF02623 FliW protein AFK25_13240 PF00700 Bacterial flagellin C-terminal helical region AFK25_13240 PF00669 Bacterial flagellin N-terminal helical region AFK25_13245 PF00460 Flagella basal body rod protein AFK25_13245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFK25_13285 PF00271 Helicase conserved C-terminal domain AFK25_13285 PF04851 Type III restriction enzyme, res subunit AFK25_13290 PF02645 Uncharacterised protein, DegV family COG1307 AFK25_13295 PF00072 Response regulator receiver domain AFK25_13295 PF00196 Bacterial regulatory proteins, luxR family AFK25_13300 PF05384 Sensor protein DegS AFK25_13300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_13300 PF07730 Histidine kinase AFK25_13305 PF01205 Uncharacterized protein family UPF0029 AFK25_13305 PF09186 Domain of unknown function (DUF1949) AFK25_13310 PF03816 Cell envelope-related transcriptional attenuator domain AFK25_13315 PF00953 Glycosyl transferase family 4 AFK25_13325 PF04122 Putative cell wall binding repeat 2 AFK25_13325 PF08486 Stage II sporulation protein AFK25_13335 PF00395 S-layer homology domain AFK25_13335 PF01520 N-acetylmuramoyl-L-alanine amidase AFK25_13340 PF00082 Subtilase family AFK25_13345 PF02872 5'-nucleotidase, C-terminal domain AFK25_13345 PF00149 Calcineurin-like phosphoesterase AFK25_13350 PF07833 Copper amine oxidase N-terminal domain AFK25_13355 PF02903 Alpha amylase, N-terminal ig-like domain AFK25_13355 PF00395 S-layer homology domain AFK25_13355 PF00128 Alpha amylase, catalytic domain AFK25_13375 PF03412 Peptidase C39 family AFK25_13375 PF00664 ABC transporter transmembrane region AFK25_13375 PF00005 ABC transporter AFK25_13430 PF00072 Response regulator receiver domain AFK25_13430 PF00196 Bacterial regulatory proteins, luxR family AFK25_13500 PF00877 NlpC/P60 family AFK25_13500 PF01476 LysM domain AFK25_13505 PF00395 S-layer homology domain AFK25_13510 PF00082 Subtilase family AFK25_13515 PF07516 SecA Wing and Scaffold domain AFK25_13515 PF01043 SecA preprotein cross-linking domain AFK25_13515 PF07517 SecA DEAD-like domain AFK25_13530 PF01381 Helix-turn-helix AFK25_13545 PF14183 YwpF-like protein AFK25_13560 PF13840 ACT domain AFK25_13560 PF00696 Amino acid kinase family AFK25_13575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_13575 PF02743 Cache domain AFK25_13575 PF00672 HAMP domain AFK25_13590 PF01943 Polysaccharide biosynthesis protein AFK25_13590 PF14667 Polysaccharide biosynthesis C-terminal domain AFK25_13595 PF03808 Glycosyl transferase WecB/TagA/CpsF family AFK25_13605 PF02810 SEC-C motif AFK25_13605 PF05225 helix-turn-helix, Psq domain AFK25_13610 PF17783 CvfB-like winged helix domain AFK25_13610 PF13509 S1 domain AFK25_13615 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFK25_13615 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFK25_13630 PF12419 SNF2 Helicase protein AFK25_13630 PF00176 SNF2 family N-terminal domain AFK25_13630 PF00271 Helicase conserved C-terminal domain AFK25_13635 PF00873 AcrB/AcrD/AcrF family AFK25_13640 PF02028 BCCT, betaine/carnitine/choline family transporter AFK25_13645 PF16363 GDP-mannose 4,6 dehydratase AFK25_13650 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFK25_13650 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFK25_13650 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFK25_13655 PF07929 Plasmid pRiA4b ORF-3-like protein AFK25_13660 PF02447 GntP family permease AFK25_13665 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFK25_13665 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFK25_13670 PF00356 Bacterial regulatory proteins, lacI family AFK25_13680 PF01695 IstB-like ATP binding protein AFK25_13685 PF00665 Integrase core domain AFK25_13685 PF02796 Helix-turn-helix domain of resolvase AFK25_13700 PF02397 Bacterial sugar transferase AFK25_13705 PF00483 Nucleotidyl transferase AFK25_13720 PF07977 FabA-like domain AFK25_13730 PF00460 Flagella basal body rod protein AFK25_13730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFK25_13735 PF00460 Flagella basal body rod protein AFK25_13735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFK25_13745 PF12116 Stage III sporulation protein D AFK25_13750 PF01551 Peptidase family M23 AFK25_13755 PF08486 Stage II sporulation protein AFK25_13760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFK25_13770 PF06612 Protein of unknown function (DUF1146) AFK25_13775 PF00361 Proton-conducting membrane transporter AFK25_13780 PF00361 Proton-conducting membrane transporter AFK25_13785 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AFK25_13785 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFK25_13785 PF00361 Proton-conducting membrane transporter AFK25_13790 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFK25_13795 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFK25_13800 PF00037 4Fe-4S binding domain AFK25_13805 PF00146 NADH dehydrogenase AFK25_13810 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFK25_13815 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFK25_13820 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFK25_13825 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFK25_13830 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFK25_13830 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AFK25_13835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFK25_13835 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFK25_13840 PF00231 ATP synthase AFK25_13845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFK25_13845 PF00306 ATP synthase alpha/beta chain, C terminal domain AFK25_13845 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFK25_13850 PF00213 ATP synthase delta (OSCP) subunit AFK25_13855 PF00430 ATP synthase B/B' CF(0) AFK25_13860 PF00137 ATP synthase subunit C AFK25_13865 PF00119 ATP synthase A chain AFK25_13870 PF03899 ATP synthase I chain AFK25_13880 PF02350 UDP-N-acetylglucosamine 2-epimerase AFK25_13890 PF00464 Serine hydroxymethyltransferase AFK25_13895 PF04260 Protein of unknown function (DUF436) AFK25_13900 PF02502 Ribose/Galactose Isomerase AFK25_13905 PF02743 Cache domain AFK25_13905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFK25_13905 PF00672 HAMP domain AFK25_13910 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFK25_13915 PF02659 Putative manganese efflux pump AFK25_13920 PF01300 Telomere recombination AFK25_13920 PF03481 Putative GTP-binding controlling metal-binding AFK25_13925 PF09551 Stage II sporulation protein R (spore_II_R) AFK25_13930 PF17827 PrmC N-terminal domain AFK25_13930 PF13847 Methyltransferase domain AFK25_13935 PF00472 RF-1 domain AFK25_13935 PF03462 PCRF domain AFK25_13940 PF00265 Thymidine kinase AFK25_13945 PF01197 Ribosomal protein L31 AFK25_13950 PF07497 Rho termination factor, RNA-binding domain AFK25_13950 PF07498 Rho termination factor, N-terminal domain AFK25_13950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFK25_13955 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AFK25_13960 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFK25_13965 PF00923 Transaldolase/Fructose-6-phosphate aldolase AFK25_13970 PF01116 Fructose-bisphosphate aldolase class-II AFK25_13975 PF00072 Response regulator receiver domain AFK25_13985 PF00117 Glutamine amidotransferase class-I AFK25_13985 PF06418 CTP synthase N-terminus AFK25_13990 PF05066 HB1, ASXL, restriction endonuclease HTH domain AFK25_13995 PF02310 B12 binding domain AFK25_13995 PF01642 Methylmalonyl-CoA mutase AFK25_14005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFK25_14005 PF02770 Acyl-CoA dehydrogenase, middle domain AFK25_14005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFK25_14010 PF02770 Acyl-CoA dehydrogenase, middle domain AFK25_14010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFK25_14010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFK25_14015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFK25_14015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFK25_14020 PF00108 Thiolase, N-terminal domain AFK25_14020 PF02803 Thiolase, C-terminal domain AFK25_14025 PF02754 Cysteine-rich domain AFK25_14025 PF13183 4Fe-4S dicluster domain AFK25_14030 PF13091 PLD-like domain AFK25_14035 PF05746 DALR anticodon binding domain AFK25_14035 PF00750 tRNA synthetases class I (R) AFK25_14035 PF03485 Arginyl tRNA synthetase N terminal domain AFK25_14050 PF00491 Arginase family AFK25_14055 PF17284 Spermidine synthase tetramerisation domain AFK25_14060 PF00912 Transglycosylase AFK25_14060 PF00905 Penicillin binding protein transpeptidase domain AFK25_14065 PF08741 YwhD family AFK25_14070 PF02163 Peptidase family M50 AFK25_14075 PF01361 Tautomerase enzyme AFK25_14085 PF01966 HD domain AFK25_14090 PF07293 Protein of unknown function (DUF1450) AFK25_14110 PF03099 Biotin/lipoate A/B protein ligase family AFK25_14115 PF01515 Phosphate acetyl/butaryl transferase AFK25_14120 PF09335 SNARE associated Golgi protein AFK25_14130 PF07486 Cell Wall Hydrolase AFK25_14135 PF09671 Spore coat protein (Spore_GerQ) AFK25_14140 PF04241 Protein of unknown function (DUF423) AFK25_14145 PF17261 Family of unknown function (DUF5327) AFK25_14155 PF00999 Sodium/hydrogen exchanger family AFK25_14155 PF02254 TrkA-N domain AFK25_14165 PF03167 Uracil DNA glycosylase superfamily AFK25_14170 PF03129 Anticodon binding domain AFK25_14170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFK25_14175 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFK25_14175 PF13192 Thioredoxin domain AFK25_14180 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFK25_14180 PF00578 AhpC/TSA family AFK25_14190 PF00535 Glycosyl transferase family 2 AFK25_14195 PF07690 Major Facilitator Superfamily AFK25_14200 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFK25_14210 PF01791 DeoC/LacD family aldolase AFK25_14215 PF01773 Na+ dependent nucleoside transporter N-terminus AFK25_14215 PF07662 Na+ dependent nucleoside transporter C-terminus AFK25_14220 PF04198 Putative sugar-binding domain AFK25_14225 PF08244 Glycosyl hydrolases family 32 C terminal AFK25_14225 PF00251 Glycosyl hydrolases family 32 N-terminal domain AFK25_14230 PF00294 pfkB family carbohydrate kinase AFK25_14235 PF02378 Phosphotransferase system, EIIC AFK25_14235 PF00367 phosphotransferase system, EIIB AFK25_14240 PF03123 CAT RNA binding domain AFK25_14240 PF00874 PRD domain AFK25_14245 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AFK25_14250 PF13556 PucR C-terminal helix-turn-helix domain AFK25_14250 PF06018 CodY GAF-like domain AFK25_14250 PF17853 GGDEF-like domain AFK25_14255 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AFK25_14255 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AFK25_14260 PF00005 ABC transporter AFK25_14270 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFK25_14275 PF02901 Pyruvate formate lyase-like AFK25_14275 PF01228 Glycine radical AFK25_14280 PF04055 Radical SAM superfamily AFK25_14285 PF13419 Haloacid dehalogenase-like hydrolase AFK25_14290 PF00588 SpoU rRNA Methylase family AFK25_14290 PF12105 SpoU, rRNA methylase, C-terminal AFK25_14295 PF04073 Aminoacyl-tRNA editing domain AFK25_14300 PF11738 Protein of unknown function (DUF3298) AFK25_14300 PF13739 Deacetylase PdaC AFK25_14305 PF08281 Sigma-70, region 4 AFK25_14305 PF04542 Sigma-70 region 2 AFK25_14315 PF12704 MacB-like periplasmic core domain AFK25_14315 PF02687 FtsX-like permease family AFK25_14315 PF00005 ABC transporter AFK25_14335 PF00005 ABC transporter AFK25_14340 PF10920 Protein of unknown function (DUF2705) AFK25_14350 PF10920 Protein of unknown function (DUF2705) AFK25_14355 PF10916 Protein of unknown function (DUF2712) AFK25_14365 PF07730 Histidine kinase AFK25_14365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_14370 PF00072 Response regulator receiver domain AFK25_14370 PF00196 Bacterial regulatory proteins, luxR family AFK25_14375 PF00005 ABC transporter AFK25_14395 PF00171 Aldehyde dehydrogenase family AFK25_14395 PF00465 Iron-containing alcohol dehydrogenase AFK25_14410 PF00355 Rieske [2Fe-2S] domain AFK25_14410 PF01266 FAD dependent oxidoreductase AFK25_14415 PF03323 Bacillus/Clostridium GerA spore germination protein AFK25_14420 PF03845 Spore germination protein AFK25_14430 PF00005 ABC transporter AFK25_14430 PF08402 TOBE domain AFK25_14435 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_14440 PF00528 Binding-protein-dependent transport system inner membrane component AFK25_14445 PF13416 Bacterial extracellular solute-binding protein AFK25_14450 PF00854 POT family AFK25_14455 PF04002 RadC-like JAB domain AFK25_14460 PF07508 Recombinase AFK25_14460 PF00239 Resolvase, N terminal domain AFK25_14495 PF01170 Putative RNA methylase family UPF0020 AFK25_14495 PF10672 S-adenosylmethionine-dependent methyltransferase AFK25_14495 PF02926 THUMP domain AFK25_14510 PF02590 Predicted SPOUT methyltransferase AFK25_14515 PF13180 PDZ domain AFK25_14520 PF00753 Metallo-beta-lactamase superfamily AFK25_14525 PF09648 YycH protein AFK25_14535 PF00672 HAMP domain AFK25_14535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFK25_14535 PF13426 PAS domain AFK25_14535 PF00512 His Kinase A (phospho-acceptor) domain AFK25_14540 PF00072 Response regulator receiver domain AFK25_14540 PF00486 Transcriptional regulatory protein, C terminal AFK25_14555 PF00709 Adenylosuccinate synthetase AFK25_14560 PF03796 DnaB-like helicase C terminal domain AFK25_14560 PF00772 DnaB-like helicase N terminal domain AFK25_14565 PF03948 Ribosomal protein L9, C-terminal domain AFK25_14565 PF01281 Ribosomal protein L9, N-terminal domain AFK25_14570 PF02272 DHHA1 domain AFK25_14570 PF01368 DHH family AFK25_14575 PF09991 Predicted membrane protein (DUF2232) AFK25_14580 PF01084 Ribosomal protein S18 AFK25_14585 PF00436 Single-strand binding protein family AFK25_14590 PF01250 Ribosomal protein S6 AFK25_14595 PF06071 Protein of unknown function (DUF933) AFK25_14595 PF01926 50S ribosome-binding GTPase AFK25_14600 PF06107 Bacterial protein of unknown function (DUF951) AFK25_14605 PF00924 Mechanosensitive ion channel AFK25_14610 PF06866 Protein of unknown function (DUF1256) AFK25_14620 PF17762 HTH domain found in ParB protein AFK25_14620 PF02195 ParB-like nuclease domain AFK25_14625 PF13614 AAA domain AFK25_14630 PF17762 HTH domain found in ParB protein AFK25_14630 PF02195 ParB-like nuclease domain AFK25_14635 PF02527 rRNA small subunit methyltransferase G AFK25_14640 PF01134 Glucose inhibited division protein A AFK25_14640 PF13932 GidA associated domain AFK25_14645 PF10396 GTP-binding protein TrmE N-terminus AFK25_14645 PF12631 MnmE helical domain AFK25_14645 PF01926 50S ribosome-binding GTPase AFK25_14650 PF01424 R3H domain AFK25_14650 PF14804 Jag N-terminus AFK25_14655 PF02096 60Kd inner membrane protein AFK25_14660 PF00825 Ribonuclease P AFK25_14665 PF00468 Ribosomal protein L34