AFK25_00005 SM00382 ATPases associated with a variety of cellular activities AFK25_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AFK25_00010 SM00480 DNA polymerase III beta subunit AFK25_00025 SM00387 Histidine kinase-like ATPases AFK25_00025 SM00433 TopoisomeraseII AFK25_00030 SM00434 DNA Topoisomerase IV AFK25_00035 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFK25_00070 SM00116 Domain in cystathionine beta-synthase and other proteins. AFK25_00070 SM01240 AFK25_00070 AFK25_00075 SM00936 Penicillin-binding protein 5, C-terminal domain AFK25_00120 SM00382 ATPases associated with a variety of cellular activities AFK25_00130 SM00493 AFK25_00130 AFK25_00210 SM00966 SpoVT / AbrB like domain AFK25_00225 SM01208 AFK25_00225 AFK25_00230 SM00493 AFK25_00230 AFK25_00235 SM00650 Ribosomal RNA adenine dimethylases AFK25_00275 SM01400 AFK25_00275 AFK25_00295 SM00487 DEAD-like helicases superfamily AFK25_00295 SM00490 helicase superfamily c-terminal domain AFK25_00295 SM00982 AFK25_00295 AFK25_00295 SM01058 CarD-like/TRCF domain AFK25_00300 SM00966 SpoVT / AbrB like domain AFK25_00315 SM00363 S4 RNA-binding domain AFK25_00335 SM00316 Ribosomal protein S1-like RNA-binding domain AFK25_00350 SM00331 Sigma factor PP2C-like phosphatases AFK25_00350 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFK25_00360 SM00220 Serine/Threonine protein kinases, catalytic domain AFK25_00365 SM00977 TilS substrate C-terminal domain AFK25_00375 SM00382 ATPases associated with a variety of cellular activities AFK25_00415 SM00905 Dihydroneopterin aldolase AFK25_00465 SM00382 ATPases associated with a variety of cellular activities AFK25_00465 SM01086 C-terminal, D2-small domain, of ClpB protein AFK25_00470 SM00382 ATPases associated with a variety of cellular activities AFK25_00475 SM00670 Large family of predicted nucleotide-binding domains AFK25_00500 SM00840 AFK25_00500 AFK25_00505 SM00535 Ribonuclease III family AFK25_00510 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFK25_00535 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AFK25_00535 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFK25_00540 SM00649 Ribosomal protein L11/L12 AFK25_00570 SM00663 RNA polymerase I subunit A N-terminus AFK25_00590 SM00838 Elongation factor G C-terminus AFK25_00590 SM00889 Elongation factor G, domain IV AFK25_00600 SM01403 AFK25_00600 AFK25_00620 SM01382 AFK25_00620 AFK25_00620 SM01383 AFK25_00620 AFK25_00635 SM00322 K homology RNA-binding domain AFK25_00655 SM01374 AFK25_00655 AFK25_00660 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFK25_00720 SM00316 Ribosomal protein S1-like RNA-binding domain AFK25_00740 SM00662 RNA polymerases D AFK25_00750 SM00382 ATPases associated with a variety of cellular activities AFK25_00755 SM00382 ATPases associated with a variety of cellular activities AFK25_00785 SM00646 AFK25_00785 AFK25_00800 SM01251 AFK25_00800 AFK25_00935 SM00342 helix_turn_helix, arabinose operon control protein AFK25_00955 SM00387 Histidine kinase-like ATPases AFK25_00960 SM00421 helix_turn_helix, Lux Regulon AFK25_00960 SM00448 cheY-homologous receiver domain AFK25_00975 SM00422 helix_turn_helix, mercury resistance AFK25_01015 SM00878 Biotin carboxylase C-terminal domain AFK25_01080 SM00487 DEAD-like helicases superfamily AFK25_01080 SM00490 helicase superfamily c-terminal domain AFK25_01095 SM01005 Alanine racemase, C-terminal domain AFK25_01110 SM00316 Ribosomal protein S1-like RNA-binding domain AFK25_01110 SM00732 Likely ribonuclease with RNase H fold. AFK25_01115 SM00731 SprT homologues. AFK25_01220 SM00382 ATPases associated with a variety of cellular activities AFK25_01225 SM00881 CoA binding domain AFK25_01240 SM00883 Chaperonin 10 Kd subunit AFK25_01285 SM01001 AIR carboxylase AFK25_01295 SM00998 Adenylosuccinate lyase C-terminus AFK25_01310 SM01211 AFK25_01310 AFK25_01335 SM00798 AICARFT/IMPCHase bienzyme AFK25_01335 SM00851 MGS-like domain AFK25_01340 SM01209 AFK25_01340 AFK25_01340 SM01210 AFK25_01340 AFK25_01375 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFK25_01375 SM00292 breast cancer carboxy-terminal domain AFK25_01375 SM00532 Ligase N family AFK25_01415 SM00845 GatB domain AFK25_01425 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFK25_01425 SM00419 helix_turn_helix, cAMP Regulatory protein AFK25_01455 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFK25_01475 SM00387 Histidine kinase-like ATPases AFK25_01475 SM00388 His Kinase A (phosphoacceptor) domain AFK25_01480 SM00448 cheY-homologous receiver domain AFK25_01480 SM00862 Transcriptional regulatory protein, C terminal AFK25_01500 SM00046 Diacylglycerol kinase catalytic domain (presumed) AFK25_01510 SM00857 Resolvase, N terminal domain AFK25_01520 SM00857 Resolvase, N terminal domain AFK25_01540 SM00382 ATPases associated with a variety of cellular activities AFK25_01545 SM00857 Resolvase, N terminal domain AFK25_01575 SM00382 ATPases associated with a variety of cellular activities AFK25_01580 SM00448 cheY-homologous receiver domain AFK25_01580 SM00862 Transcriptional regulatory protein, C terminal AFK25_01585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_01585 SM00387 Histidine kinase-like ATPases AFK25_01585 SM00388 His Kinase A (phosphoacceptor) domain AFK25_01615 SM00382 ATPases associated with a variety of cellular activities AFK25_01625 SM00448 cheY-homologous receiver domain AFK25_01625 SM00862 Transcriptional regulatory protein, C terminal AFK25_01630 SM00387 Histidine kinase-like ATPases AFK25_01630 SM00388 His Kinase A (phosphoacceptor) domain AFK25_01655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_01660 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFK25_01665 SM00052 Putative diguanylate phosphodiesterase AFK25_01665 SM00267 diguanylate cyclase AFK25_01680 SM00450 Rhodanese Homology Domain AFK25_01690 SM00899 AFK25_01690 AFK25_01760 SM00226 Low molecular weight phosphatase family AFK25_01815 SM00478 endonuclease III AFK25_01830 SM00487 DEAD-like helicases superfamily AFK25_01830 SM00490 helicase superfamily c-terminal domain AFK25_01840 SM00100 Cyclic nucleotide-monophosphate binding domain AFK25_01840 SM00419 helix_turn_helix, cAMP Regulatory protein AFK25_01850 SM00829 Enoylreductase AFK25_01855 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_01855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_01885 SM00822 AFK25_01885 AFK25_01910 SM00478 endonuclease III AFK25_01930 SM00382 ATPases associated with a variety of cellular activities AFK25_01935 SM00382 ATPases associated with a variety of cellular activities AFK25_01970 SM00382 ATPases associated with a variety of cellular activities AFK25_02145 SM00382 ATPases associated with a variety of cellular activities AFK25_02175 SM00347 helix_turn_helix multiple antibiotic resistance protein AFK25_02195 SM00873 B3/4 domain AFK25_02200 SM00567 E-Z type HEAT repeats AFK25_02215 SM00763 PrkA AAA domain AFK25_02225 SM00857 Resolvase, N terminal domain AFK25_02255 SM00530 Helix-turn-helix XRE-family like proteins AFK25_02260 SM00530 Helix-turn-helix XRE-family like proteins AFK25_02335 SM01040 BRO family, N-terminal domain AFK25_02515 SM00257 Lysin motif AFK25_02515 SM00644 AFK25_02515 AFK25_02535 SM00530 Helix-turn-helix XRE-family like proteins AFK25_02550 SM00450 Rhodanese Homology Domain AFK25_02555 SM00450 Rhodanese Homology Domain AFK25_02580 SM00450 Rhodanese Homology Domain AFK25_02580 SM00849 Metallo-beta-lactamase superfamily AFK25_02590 SM01091 Transporter associated domain AFK25_02615 SM00116 Domain in cystathionine beta-synthase and other proteins. AFK25_02640 SM00244 prohibitin homologues AFK25_02645 SM00244 prohibitin homologues AFK25_02655 SM00347 helix_turn_helix multiple antibiotic resistance protein AFK25_02655 SM00529 Helix-turn-helix diphteria tox regulatory element AFK25_02665 SM00642 Alpha-amylase domain AFK25_02675 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFK25_02690 SM00382 ATPases associated with a variety of cellular activities AFK25_02730 SM00116 Domain in cystathionine beta-synthase and other proteins. AFK25_02730 SM01091 Transporter associated domain AFK25_02735 SM00062 Bacterial periplasmic substrate-binding proteins AFK25_02735 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AFK25_02745 SM00382 ATPases associated with a variety of cellular activities AFK25_02760 SM00382 ATPases associated with a variety of cellular activities AFK25_02790 SM00729 Elongator protein 3, MiaB family, Radical SAM AFK25_02820 SM00347 helix_turn_helix multiple antibiotic resistance protein AFK25_02850 SM00382 ATPases associated with a variety of cellular activities AFK25_02865 SM00450 Rhodanese Homology Domain AFK25_02900 SM00354 helix_turn _helix lactose operon repressor AFK25_02920 SM00642 Alpha-amylase domain AFK25_02925 SM00849 Metallo-beta-lactamase superfamily AFK25_02945 SM00100 Cyclic nucleotide-monophosphate binding domain AFK25_02945 SM00116 Domain in cystathionine beta-synthase and other proteins. AFK25_02950 SM00479 AFK25_02950 AFK25_02980 SM00382 ATPases associated with a variety of cellular activities AFK25_02985 SM00052 Putative diguanylate phosphodiesterase AFK25_02985 SM00091 PAS domain AFK25_02985 SM00267 diguanylate cyclase AFK25_02990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_03000 SM00052 Putative diguanylate phosphodiesterase AFK25_03120 SM00052 Putative diguanylate phosphodiesterase AFK25_03120 SM00091 PAS domain AFK25_03120 SM00267 diguanylate cyclase AFK25_03155 SM00563 Phosphate acyltransferases AFK25_03175 SM00342 helix_turn_helix, arabinose operon control protein AFK25_03180 SM00642 Alpha-amylase domain AFK25_03200 SM00642 Alpha-amylase domain AFK25_03210 SM00354 helix_turn _helix lactose operon repressor AFK25_03235 SM00382 ATPases associated with a variety of cellular activities AFK25_03310 SM01018 B12 binding domain AFK25_03330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_03330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_03360 SM00100 Cyclic nucleotide-monophosphate binding domain AFK25_03360 SM00419 helix_turn_helix, cAMP Regulatory protein AFK25_03365 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFK25_03385 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AFK25_03390 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFK25_03405 SM00382 ATPases associated with a variety of cellular activities AFK25_03405 SM01086 C-terminal, D2-small domain, of ClpB protein AFK25_03430 SM00825 Beta-ketoacyl synthase AFK25_03475 SM00382 ATPases associated with a variety of cellular activities AFK25_03480 SM00382 ATPases associated with a variety of cellular activities AFK25_03495 SM00155 Phospholipase D. Active site motifs. AFK25_03535 SM01118 AFK25_03535 AFK25_03545 SM00954 Region found in RelA / SpoT proteins AFK25_03580 SM00116 Domain in cystathionine beta-synthase and other proteins. AFK25_03580 SM00924 MgtE intracellular N domain AFK25_03605 SM00984 UDP binding domain AFK25_03710 SM01321 AFK25_03710 AFK25_03770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFK25_03905 SM01126 AFK25_03905 AFK25_03945 SM00487 DEAD-like helicases superfamily AFK25_03965 SM00422 helix_turn_helix, mercury resistance AFK25_04030 SM00382 ATPases associated with a variety of cellular activities AFK25_04035 SM00382 ATPases associated with a variety of cellular activities AFK25_04050 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFK25_04055 SM00382 ATPases associated with a variety of cellular activities AFK25_04060 SM00567 E-Z type HEAT repeats AFK25_04060 SM00932 Scaffold protein Nfu/NifU N terminal AFK25_04070 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFK25_04095 SM00382 ATPases associated with a variety of cellular activities AFK25_04095 SM00930 AFK25_04095 AFK25_04125 SM00822 AFK25_04125 AFK25_04135 SM00091 PAS domain AFK25_04135 SM00382 ATPases associated with a variety of cellular activities AFK25_04145 SM00966 SpoVT / AbrB like domain AFK25_04170 SM00219 Tyrosine kinase, catalytic domain AFK25_04175 SM00530 Helix-turn-helix XRE-family like proteins AFK25_04180 SM00870 AFK25_04180 AFK25_04190 SM00919 Malic enzyme, NAD binding domain AFK25_04190 SM01274 AFK25_04190 AFK25_04195 SM00387 Histidine kinase-like ATPases AFK25_04195 SM00388 His Kinase A (phosphoacceptor) domain AFK25_04235 SM00387 Histidine kinase-like ATPases AFK25_04235 SM00388 His Kinase A (phosphoacceptor) domain AFK25_04275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_04275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_04280 SM00354 helix_turn _helix lactose operon repressor AFK25_04325 SM00729 Elongator protein 3, MiaB family, Radical SAM AFK25_04335 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFK25_04335 SM00895 AFK25_04335 AFK25_04355 SM00091 PAS domain AFK25_04355 SM00387 Histidine kinase-like ATPases AFK25_04355 SM00388 His Kinase A (phosphoacceptor) domain AFK25_04360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_04370 SM00382 ATPases associated with a variety of cellular activities AFK25_04410 SM01007 Class II Aldolase and Adducin N-terminal domain AFK25_04430 SM00387 Histidine kinase-like ATPases AFK25_04430 SM00388 His Kinase A (phosphoacceptor) domain AFK25_04445 SM00382 ATPases associated with a variety of cellular activities AFK25_04460 SM00382 ATPases associated with a variety of cellular activities AFK25_04460 SM01086 C-terminal, D2-small domain, of ClpB protein AFK25_04465 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFK25_04465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_04470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_04470 SM00387 Histidine kinase-like ATPases AFK25_04470 SM00388 His Kinase A (phosphoacceptor) domain AFK25_04475 SM00448 cheY-homologous receiver domain AFK25_04475 SM00862 Transcriptional regulatory protein, C terminal AFK25_04500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_04560 SM00387 Histidine kinase-like ATPases AFK25_04560 SM00388 His Kinase A (phosphoacceptor) domain AFK25_04585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_04630 SM00257 Lysin motif AFK25_04640 SM01061 CAT RNA binding domain AFK25_04665 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_04665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_04685 SM00914 AFK25_04685 AFK25_04695 SM00387 Histidine kinase-like ATPases AFK25_04695 SM00388 His Kinase A (phosphoacceptor) domain AFK25_04710 SM00260 Two component signalling adaptor domain AFK25_04710 SM00448 cheY-homologous receiver domain AFK25_04715 SM00267 diguanylate cyclase AFK25_04715 SM00448 cheY-homologous receiver domain AFK25_04735 SM00448 cheY-homologous receiver domain AFK25_04740 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFK25_04740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_04740 SM00387 Histidine kinase-like ATPases AFK25_04740 SM00388 His Kinase A (phosphoacceptor) domain AFK25_04740 SM00448 cheY-homologous receiver domain AFK25_04760 SM00052 Putative diguanylate phosphodiesterase AFK25_04760 SM00267 diguanylate cyclase AFK25_04800 SM00052 Putative diguanylate phosphodiesterase AFK25_04840 SM00849 Metallo-beta-lactamase superfamily AFK25_04865 SM00861 Transketolase, pyrimidine binding domain AFK25_04920 SM00382 ATPases associated with a variety of cellular activities AFK25_04945 SM00838 Elongation factor G C-terminus AFK25_04980 SM00670 Large family of predicted nucleotide-binding domains AFK25_05000 SM00878 Biotin carboxylase C-terminal domain AFK25_05075 SM00116 Domain in cystathionine beta-synthase and other proteins. AFK25_05140 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFK25_05195 SM00740 AFK25_05195 AFK25_05200 SM00740 AFK25_05200 AFK25_05255 SM00842 Cell division protein FtsA AFK25_05260 SM00864 Tubulin/FtsZ family, GTPase domain AFK25_05260 SM00865 Tubulin/FtsZ family, C-terminal domain AFK25_05305 SM00363 S4 RNA-binding domain AFK25_05325 SM00363 S4 RNA-binding domain AFK25_05350 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AFK25_05355 SM00851 MGS-like domain AFK25_05355 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFK25_05370 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AFK25_05390 SM00831 Cation transporter/ATPase, N-terminus AFK25_05400 SM00072 Guanylate kinase homologues. AFK25_05405 SM01409 AFK25_05405 AFK25_05415 SM00487 DEAD-like helicases superfamily AFK25_05415 SM00490 helicase superfamily c-terminal domain AFK25_05440 SM00331 Sigma factor PP2C-like phosphatases AFK25_05440 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFK25_05445 SM00220 Serine/Threonine protein kinases, catalytic domain AFK25_05445 SM00740 AFK25_05445 AFK25_05460 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AFK25_05480 SM01120 AFK25_05480 AFK25_05480 SM01121 AFK25_05480 AFK25_05495 SM00487 DEAD-like helicases superfamily AFK25_05495 SM00490 helicase superfamily c-terminal domain AFK25_05510 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFK25_05515 SM00822 AFK25_05515 AFK25_05525 SM00358 Double-stranded RNA binding motif AFK25_05525 SM00535 Ribonuclease III family AFK25_05530 SM00968 SMC proteins Flexible Hinge Domain AFK25_05535 SM00382 ATPases associated with a variety of cellular activities AFK25_05535 SM00962 SRP54-type protein, GTPase domain AFK25_05535 SM00963 SRP54-type protein, helical bundle domain AFK25_05545 SM00382 ATPases associated with a variety of cellular activities AFK25_05545 SM00962 SRP54-type protein, GTPase domain AFK25_05545 SM00963 SRP54-type protein, helical bundle domain AFK25_05610 SM00881 CoA binding domain AFK25_05620 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFK25_05620 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFK25_05620 SM00493 AFK25_05620 AFK25_05640 SM00382 ATPases associated with a variety of cellular activities AFK25_05640 SM01086 C-terminal, D2-small domain, of ClpB protein AFK25_05680 SM00382 ATPases associated with a variety of cellular activities AFK25_05730 SM00448 cheY-homologous receiver domain AFK25_05765 SM00382 ATPases associated with a variety of cellular activities AFK25_05765 SM00962 SRP54-type protein, GTPase domain AFK25_05775 SM00448 cheY-homologous receiver domain AFK25_05780 SM00073 Histidine Phosphotransfer domain AFK25_05780 SM00260 Two component signalling adaptor domain AFK25_05780 SM00387 Histidine kinase-like ATPases AFK25_05780 SM01231 AFK25_05780 AFK25_05785 SM00260 Two component signalling adaptor domain AFK25_05855 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFK25_05865 SM00479 AFK25_05865 AFK25_05865 SM00481 DNA polymerase alpha chain like domain AFK25_05875 SM00316 Ribosomal protein S1-like RNA-binding domain AFK25_05875 SM00322 K homology RNA-binding domain AFK25_05910 SM00904 Riboflavin kinase AFK25_05915 SM01387 AFK25_05915 AFK25_05920 SM00316 Ribosomal protein S1-like RNA-binding domain AFK25_05920 SM00322 K homology RNA-binding domain AFK25_05940 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFK25_05950 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFK25_05960 SM01130 AFK25_05960 AFK25_05965 SM00849 Metallo-beta-lactamase superfamily AFK25_05980 SM00382 ATPases associated with a variety of cellular activities AFK25_05980 SM00843 AFK25_05980 AFK25_05985 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFK25_05985 SM00866 AFK25_05985 AFK25_05995 SM00382 ATPases associated with a variety of cellular activities AFK25_06035 SM00854 Bacterial capsule synthesis protein PGA_cap AFK25_06065 SM00347 helix_turn_helix multiple antibiotic resistance protein AFK25_06075 SM00487 DEAD-like helicases superfamily AFK25_06075 SM00490 helicase superfamily c-terminal domain AFK25_06125 SM00950 AFK25_06125 AFK25_06150 SM00346 helix_turn_helix isocitrate lyase regulation AFK25_06155 SM00796 Allophanate hydrolase subunit 1 AFK25_06160 SM00797 Allophanate hydrolase subunit 2 AFK25_06175 SM01321 AFK25_06175 AFK25_06185 SM00567 E-Z type HEAT repeats AFK25_06185 SM00932 Scaffold protein Nfu/NifU N terminal AFK25_06200 SM00382 ATPases associated with a variety of cellular activities AFK25_06245 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFK25_06275 SM00966 SpoVT / AbrB like domain AFK25_06370 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFK25_06410 SM00354 helix_turn _helix lactose operon repressor AFK25_06425 SM00347 helix_turn_helix multiple antibiotic resistance protein AFK25_06435 SM00257 Lysin motif AFK25_06440 SM00382 ATPases associated with a variety of cellular activities AFK25_06460 SM00346 helix_turn_helix isocitrate lyase regulation AFK25_06500 SM00387 Histidine kinase-like ATPases AFK25_06500 SM00388 His Kinase A (phosphoacceptor) domain AFK25_06505 SM00448 cheY-homologous receiver domain AFK25_06510 SM00387 Histidine kinase-like ATPases AFK25_06525 SM00062 Bacterial periplasmic substrate-binding proteins AFK25_06525 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AFK25_06530 SM00382 ATPases associated with a variety of cellular activities AFK25_06560 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFK25_06645 SM00045 Diacylglycerol kinase accessory domain (presumed) AFK25_06645 SM00046 Diacylglycerol kinase catalytic domain (presumed) AFK25_06660 SM00422 helix_turn_helix, mercury resistance AFK25_06675 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFK25_06675 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFK25_06675 SM00493 AFK25_06675 AFK25_06680 SM00450 Rhodanese Homology Domain AFK25_06715 SM00530 Helix-turn-helix XRE-family like proteins AFK25_06725 SM00852 Probable molybdopterin binding domain AFK25_06730 SM00382 ATPases associated with a variety of cellular activities AFK25_06735 SM00322 K homology RNA-binding domain AFK25_06735 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFK25_06770 SM00729 Elongator protein 3, MiaB family, Radical SAM AFK25_06785 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFK25_06785 SM00534 ATPase domain of DNA mismatch repair MUTS family AFK25_06790 SM00853 MutL C terminal dimerisation domain AFK25_06790 SM01340 AFK25_06790 AFK25_06805 SM00382 ATPases associated with a variety of cellular activities AFK25_06855 SM00422 helix_turn_helix, mercury resistance AFK25_06860 SM01230 AFK25_06860 AFK25_06870 SM00257 Lysin motif AFK25_06875 SM00857 Resolvase, N terminal domain AFK25_06885 SM00861 Transketolase, pyrimidine binding domain AFK25_06900 SM00448 cheY-homologous receiver domain AFK25_06970 SM00357 Cold shock protein domain AFK25_07000 SM00267 diguanylate cyclase AFK25_07000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFK25_07005 SM00420 helix_turn_helix, Deoxyribose operon repressor AFK25_07005 SM01134 AFK25_07005 AFK25_07025 SM00387 Histidine kinase-like ATPases AFK25_07025 SM00388 His Kinase A (phosphoacceptor) domain AFK25_07035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_07035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_07205 SM01207 AFK25_07205 AFK25_07210 SM00881 CoA binding domain AFK25_07215 SM00387 Histidine kinase-like ATPases AFK25_07215 SM00433 TopoisomeraseII AFK25_07220 SM00434 DNA Topoisomerase IV AFK25_07235 SM00642 Alpha-amylase domain AFK25_07240 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFK25_07240 SM00866 AFK25_07240 AFK25_07275 SM00382 ATPases associated with a variety of cellular activities AFK25_07280 SM00327 von Willebrand factor (vWF) type A domain AFK25_07305 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFK25_07305 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFK25_07305 SM00493 AFK25_07305 AFK25_07335 SM00100 Cyclic nucleotide-monophosphate binding domain AFK25_07335 SM00419 helix_turn_helix, cAMP Regulatory protein AFK25_07395 SM00422 helix_turn_helix, mercury resistance AFK25_07425 SM00822 AFK25_07425 AFK25_07440 SM00226 Low molecular weight phosphatase family AFK25_07450 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFK25_07455 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFK25_07470 SM00849 Metallo-beta-lactamase superfamily AFK25_07485 SM00382 ATPases associated with a variety of cellular activities AFK25_07495 SM01230 AFK25_07495 AFK25_07500 SM00357 Cold shock protein domain AFK25_07520 SM00382 ATPases associated with a variety of cellular activities AFK25_07525 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFK25_07560 SM00091 PAS domain AFK25_07560 SM00387 Histidine kinase-like ATPases AFK25_07560 SM00388 His Kinase A (phosphoacceptor) domain AFK25_07625 SM00729 Elongator protein 3, MiaB family, Radical SAM AFK25_07625 SM00876 Biotin and Thiamin Synthesis associated domain AFK25_07720 SM00491 AFK25_07720 AFK25_07725 SM00981 AFK25_07725 AFK25_07730 SM00052 Putative diguanylate phosphodiesterase AFK25_07730 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFK25_07730 SM00091 PAS domain AFK25_07730 SM00267 diguanylate cyclase AFK25_07745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_07765 SM00331 Sigma factor PP2C-like phosphatases AFK25_07765 SM00448 cheY-homologous receiver domain AFK25_07790 SM00382 ATPases associated with a variety of cellular activities AFK25_07805 SM00318 Staphylococcal nuclease homologues AFK25_07810 SM00855 Phosphoglycerate mutase family AFK25_07815 SM00382 ATPases associated with a variety of cellular activities AFK25_07830 SM00710 Parallel beta-helix repeats AFK25_07830 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AFK25_07835 SM00052 Putative diguanylate phosphodiesterase AFK25_07835 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFK25_07835 SM00091 PAS domain AFK25_07835 SM00267 diguanylate cyclase AFK25_07845 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFK25_07850 SM00479 AFK25_07850 AFK25_07890 SM00382 ATPases associated with a variety of cellular activities AFK25_07895 SM00382 ATPases associated with a variety of cellular activities AFK25_07945 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFK25_07955 SM00382 ATPases associated with a variety of cellular activities AFK25_07965 SM00342 helix_turn_helix, arabinose operon control protein AFK25_07965 SM00448 cheY-homologous receiver domain AFK25_07970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_07970 SM00387 Histidine kinase-like ATPases AFK25_07980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_07980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_07995 SM00450 Rhodanese Homology Domain AFK25_08000 SM00450 Rhodanese Homology Domain AFK25_08045 SM00382 ATPases associated with a variety of cellular activities AFK25_08105 SM00422 helix_turn_helix, mercury resistance AFK25_08115 SM01245 AFK25_08115 AFK25_08130 SM00382 ATPases associated with a variety of cellular activities AFK25_08140 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFK25_08155 SM00382 ATPases associated with a variety of cellular activities AFK25_08185 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFK25_08185 SM00475 5'-3' exonuclease AFK25_08265 SM00893 Electron transfer flavoprotein domain AFK25_08270 SM00893 Electron transfer flavoprotein domain AFK25_08340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_08350 SM00871 Bacterial transcription activator, effector binding domain AFK25_08425 SM00448 cheY-homologous receiver domain AFK25_08425 SM00862 Transcriptional regulatory protein, C terminal AFK25_08430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_08430 SM00387 Histidine kinase-like ATPases AFK25_08430 SM00388 His Kinase A (phosphoacceptor) domain AFK25_08450 SM00640 Glycosyl hydrolases family 32 AFK25_08475 SM00729 Elongator protein 3, MiaB family, Radical SAM AFK25_08480 SM01266 AFK25_08480 AFK25_08535 SM00028 Tetratricopeptide repeats AFK25_08555 SM00487 DEAD-like helicases superfamily AFK25_08555 SM00490 helicase superfamily c-terminal domain AFK25_08620 SM00382 ATPases associated with a variety of cellular activities AFK25_08625 SM00052 Putative diguanylate phosphodiesterase AFK25_08625 SM00267 diguanylate cyclase AFK25_08630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_08650 SM00267 diguanylate cyclase AFK25_08715 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFK25_08715 SM00478 endonuclease III AFK25_08715 SM00525 AFK25_08715 AFK25_08765 SM00479 AFK25_08765 AFK25_08765 SM00487 DEAD-like helicases superfamily AFK25_08765 SM00491 AFK25_08765 AFK25_08805 SM00851 MGS-like domain AFK25_08855 SM00914 AFK25_08855 AFK25_08860 SM00028 Tetratricopeptide repeats AFK25_08925 SM00138 Methyltransferase, chemotaxis proteins AFK25_08930 SM00562 AFK25_08930 AFK25_08960 SM00411 bacterial (prokaryotic) histone like domain AFK25_09005 SM01240 AFK25_09005 AFK25_09010 SM00316 Ribosomal protein S1-like RNA-binding domain AFK25_09015 SM00563 Phosphate acyltransferases AFK25_09065 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFK25_09080 SM00422 helix_turn_helix, mercury resistance AFK25_09115 SM00257 Lysin motif AFK25_09125 SM00487 DEAD-like helicases superfamily AFK25_09125 SM00490 helicase superfamily c-terminal domain AFK25_09175 SM00855 Phosphoglycerate mutase family AFK25_09200 SM00382 ATPases associated with a variety of cellular activities AFK25_09215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_09215 SM00387 Histidine kinase-like ATPases AFK25_09215 SM00388 His Kinase A (phosphoacceptor) domain AFK25_09220 SM00448 cheY-homologous receiver domain AFK25_09220 SM00862 Transcriptional regulatory protein, C terminal AFK25_09240 SM00363 S4 RNA-binding domain AFK25_09280 SM00422 helix_turn_helix, mercury resistance AFK25_09280 SM00857 Resolvase, N terminal domain AFK25_09285 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFK25_09410 SM00387 Histidine kinase-like ATPases AFK25_09420 SM00936 Penicillin-binding protein 5, C-terminal domain AFK25_09425 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AFK25_09495 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFK25_09505 SM00100 Cyclic nucleotide-monophosphate binding domain AFK25_09505 SM00419 helix_turn_helix, cAMP Regulatory protein AFK25_09535 SM00852 Probable molybdopterin binding domain AFK25_09545 SM00852 Probable molybdopterin binding domain AFK25_09550 SM00729 Elongator protein 3, MiaB family, Radical SAM AFK25_09555 SM00382 ATPases associated with a variety of cellular activities AFK25_09605 SM00382 ATPases associated with a variety of cellular activities AFK25_09635 SM00729 Elongator protein 3, MiaB family, Radical SAM AFK25_09640 SM00704 CDGSH-type zinc finger. Function unknown. AFK25_09660 SM00849 Metallo-beta-lactamase superfamily AFK25_09695 SM01350 AFK25_09695 AFK25_09700 SM00260 Two component signalling adaptor domain AFK25_09750 SM00861 Transketolase, pyrimidine binding domain AFK25_09770 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFK25_09780 SM00091 PAS domain AFK25_09780 SM00382 ATPases associated with a variety of cellular activities AFK25_09795 SM00448 cheY-homologous receiver domain AFK25_09800 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFK25_09815 SM00363 S4 RNA-binding domain AFK25_09820 SM00861 Transketolase, pyrimidine binding domain AFK25_09855 SM00878 Biotin carboxylase C-terminal domain AFK25_09900 SM00382 ATPases associated with a variety of cellular activities AFK25_09910 SM00841 Elongation factor P, C-terminal AFK25_09910 SM01185 AFK25_09910 AFK25_09945 SM00529 Helix-turn-helix diphteria tox regulatory element AFK25_09965 SM00450 Rhodanese Homology Domain AFK25_09985 SM00487 DEAD-like helicases superfamily AFK25_09985 SM00490 helicase superfamily c-terminal domain AFK25_10035 SM00382 ATPases associated with a variety of cellular activities AFK25_10045 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFK25_10060 SM00849 Metallo-beta-lactamase superfamily AFK25_10070 SM00631 AFK25_10070 AFK25_10100 SM00028 Tetratricopeptide repeats AFK25_10145 SM00382 ATPases associated with a variety of cellular activities AFK25_10190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_10190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_10225 SM00382 ATPases associated with a variety of cellular activities AFK25_10240 SM00518 AP endonuclease family 2 AFK25_10245 SM00487 DEAD-like helicases superfamily AFK25_10245 SM00490 helicase superfamily c-terminal domain AFK25_10285 SM00400 zinc finger AFK25_10285 SM00493 AFK25_10285 AFK25_10295 SM00116 Domain in cystathionine beta-synthase and other proteins. AFK25_10360 SM00729 Elongator protein 3, MiaB family, Radical SAM AFK25_10375 SM00271 DnaJ molecular chaperone homology domain AFK25_10395 SM00729 Elongator protein 3, MiaB family, Radical SAM AFK25_10400 SM00838 Elongation factor G C-terminus AFK25_10425 SM00100 Cyclic nucleotide-monophosphate binding domain AFK25_10425 SM00419 helix_turn_helix, cAMP Regulatory protein AFK25_10440 SM00849 Metallo-beta-lactamase superfamily AFK25_10450 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFK25_10470 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFK25_10480 SM01103 AFK25_10480 AFK25_10555 SM00487 DEAD-like helicases superfamily AFK25_10555 SM00490 helicase superfamily c-terminal domain AFK25_10580 SM00382 ATPases associated with a variety of cellular activities AFK25_10595 SM00318 Staphylococcal nuclease homologues AFK25_10675 SM00732 Likely ribonuclease with RNase H fold. AFK25_10685 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFK25_10705 SM00028 Tetratricopeptide repeats AFK25_10705 SM00671 Sel1-like repeats. AFK25_10725 SM00382 ATPases associated with a variety of cellular activities AFK25_10755 SM00287 Bacterial SH3 domain homologues AFK25_10755 SM00646 AFK25_10755 AFK25_10770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFK25_10770 SM00954 Region found in RelA / SpoT proteins AFK25_10815 SM01323 AFK25_10815 AFK25_10835 SM00382 ATPases associated with a variety of cellular activities AFK25_10840 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFK25_10870 SM00257 Lysin motif AFK25_10915 SM01317 AFK25_10915 AFK25_11020 SM00382 ATPases associated with a variety of cellular activities AFK25_11025 SM00382 ATPases associated with a variety of cellular activities AFK25_11030 SM01208 AFK25_11030 AFK25_11060 SM00248 ankyrin repeats AFK25_11065 SM00635 Bacterial Ig-like domain 2 AFK25_11090 SM00257 Lysin motif AFK25_11100 SM01004 Delta-aminolevulinic acid dehydratase AFK25_11135 SM00382 ATPases associated with a variety of cellular activities AFK25_11135 SM00464 Found in ATP-dependent protease La (LON) AFK25_11140 SM00382 ATPases associated with a variety of cellular activities AFK25_11145 SM00382 ATPases associated with a variety of cellular activities AFK25_11145 SM00994 ClpX C4-type zinc finger AFK25_11145 SM01086 C-terminal, D2-small domain, of ClpB protein AFK25_11170 SM01329 AFK25_11170 AFK25_11175 SM00917 LeuA allosteric (dimerisation) domain AFK25_11220 SM00909 Sporulation and spore germination AFK25_11230 SM00421 helix_turn_helix, Lux Regulon AFK25_11260 SM00465 GIY-YIG type nucleases (URI domain) AFK25_11310 SM00893 Electron transfer flavoprotein domain AFK25_11315 SM00893 Electron transfer flavoprotein domain AFK25_11340 SM00463 Small MutS-related domain AFK25_11340 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFK25_11340 SM00534 ATPase domain of DNA mismatch repair MUTS family AFK25_11345 SM00481 DNA polymerase alpha chain like domain AFK25_11345 SM00483 DNA polymerase X family AFK25_11365 SM00347 helix_turn_helix multiple antibiotic resistance protein AFK25_11370 SM00873 B3/4 domain AFK25_11370 SM00874 tRNA synthetase B5 domain AFK25_11370 SM00896 Ferredoxin-fold anticodon binding domain AFK25_11380 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFK25_11430 SM00342 helix_turn_helix, arabinose operon control protein AFK25_11430 SM00448 cheY-homologous receiver domain AFK25_11435 SM00387 Histidine kinase-like ATPases AFK25_11460 SM00354 helix_turn _helix lactose operon repressor AFK25_11530 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFK25_11540 SM00382 ATPases associated with a variety of cellular activities AFK25_11565 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFK25_11580 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFK25_11580 SM01232 AFK25_11580 AFK25_11585 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFK25_11585 SM00474 3'-5' exonuclease AFK25_11585 SM00475 5'-3' exonuclease AFK25_11585 SM00482 DNA polymerase A domain AFK25_11590 SM00091 PAS domain AFK25_11590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_11590 SM00387 Histidine kinase-like ATPases AFK25_11590 SM00388 His Kinase A (phosphoacceptor) domain AFK25_11595 SM00448 cheY-homologous receiver domain AFK25_11595 SM00862 Transcriptional regulatory protein, C terminal AFK25_11610 SM01329 AFK25_11610 AFK25_11655 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFK25_11660 SM00919 Malic enzyme, NAD binding domain AFK25_11660 SM01274 AFK25_11660 AFK25_11665 SM00481 DNA polymerase alpha chain like domain AFK25_11690 SM00116 Domain in cystathionine beta-synthase and other proteins. AFK25_11695 SM00849 Metallo-beta-lactamase superfamily AFK25_11765 SM00382 ATPases associated with a variety of cellular activities AFK25_11790 SM00382 ATPases associated with a variety of cellular activities AFK25_11805 SM00981 AFK25_11805 AFK25_11830 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFK25_11835 SM00267 diguanylate cyclase AFK25_11840 SM00363 S4 RNA-binding domain AFK25_11840 SM01390 AFK25_11840 AFK25_11845 SM00363 S4 RNA-binding domain AFK25_11865 SM00116 Domain in cystathionine beta-synthase and other proteins. AFK25_11875 SM00354 helix_turn _helix lactose operon repressor AFK25_11880 SM00830 Chorismate mutase type II AFK25_11885 SM00842 Cell division protein FtsA AFK25_11920 SM00382 ATPases associated with a variety of cellular activities AFK25_11920 SM00843 AFK25_11920 AFK25_11955 SM00849 Metallo-beta-lactamase superfamily AFK25_11975 SM00642 Alpha-amylase domain AFK25_11980 SM00052 Putative diguanylate phosphodiesterase AFK25_12015 SM00420 helix_turn_helix, Deoxyribose operon repressor AFK25_12020 SM00363 S4 RNA-binding domain AFK25_12040 SM00450 Rhodanese Homology Domain AFK25_12055 SM00729 Elongator protein 3, MiaB family, Radical SAM AFK25_12085 SM00014 Acid phosphatase homologues AFK25_12125 SM00257 Lysin motif AFK25_12125 SM00644 AFK25_12125 AFK25_12125 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AFK25_12140 SM00382 ATPases associated with a variety of cellular activities AFK25_12160 SM00382 ATPases associated with a variety of cellular activities AFK25_12190 SM01234 AFK25_12190 AFK25_12195 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFK25_12315 SM00642 Alpha-amylase domain AFK25_12460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFK25_12500 SM00316 Ribosomal protein S1-like RNA-binding domain AFK25_12505 SM00530 Helix-turn-helix XRE-family like proteins AFK25_12515 SM00344 helix_turn_helix ASNC type AFK25_12680 SM00729 Elongator protein 3, MiaB family, Radical SAM AFK25_12740 SM00382 ATPases associated with a variety of cellular activities AFK25_12760 SM00382 ATPases associated with a variety of cellular activities AFK25_12760 SM00930 AFK25_12760 AFK25_12780 SM00493 AFK25_12780 AFK25_12845 SM00382 ATPases associated with a variety of cellular activities AFK25_12865 SM00316 Ribosomal protein S1-like RNA-binding domain AFK25_12865 SM00357 Cold shock protein domain AFK25_12865 SM00955 AFK25_12865 AFK25_12895 SM01192 AFK25_12895 AFK25_12895 SM01193 AFK25_12895 AFK25_12915 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFK25_12975 SM00028 Tetratricopeptide repeats AFK25_13060 SM00382 ATPases associated with a variety of cellular activities AFK25_13065 SM00487 DEAD-like helicases superfamily AFK25_13065 SM00490 helicase superfamily c-terminal domain AFK25_13075 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFK25_13085 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFK25_13085 SM00245 tail specific protease AFK25_13100 SM00382 ATPases associated with a variety of cellular activities AFK25_13125 SM00937 AFK25_13125 AFK25_13130 SM00957 SecA DEAD-like domain AFK25_13130 SM00958 SecA preprotein cross-linking domain AFK25_13170 SM00858 AFK25_13170 AFK25_13285 SM00487 DEAD-like helicases superfamily AFK25_13285 SM00490 helicase superfamily c-terminal domain AFK25_13295 SM00421 helix_turn_helix, Lux Regulon AFK25_13295 SM00448 cheY-homologous receiver domain AFK25_13300 SM00387 Histidine kinase-like ATPases AFK25_13335 SM00287 Bacterial SH3 domain homologues AFK25_13335 SM00646 AFK25_13335 AFK25_13355 SM00060 Fibronectin type 3 domain AFK25_13355 SM00632 AFK25_13355 AFK25_13355 SM00642 Alpha-amylase domain AFK25_13355 SM01065 Starch binding domain AFK25_13375 SM00382 ATPases associated with a variety of cellular activities AFK25_13430 SM00421 helix_turn_helix, Lux Regulon AFK25_13430 SM00448 cheY-homologous receiver domain AFK25_13515 SM00957 SecA DEAD-like domain AFK25_13515 SM00958 SecA preprotein cross-linking domain AFK25_13530 SM00530 Helix-turn-helix XRE-family like proteins AFK25_13575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_13575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_13630 SM00487 DEAD-like helicases superfamily AFK25_13630 SM00490 helicase superfamily c-terminal domain AFK25_13650 SM00984 UDP binding domain AFK25_13670 SM00354 helix_turn _helix lactose operon repressor AFK25_13680 SM00382 ATPases associated with a variety of cellular activities AFK25_13835 SM00382 ATPases associated with a variety of cellular activities AFK25_13905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFK25_13905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_13910 SM00226 Low molecular weight phosphatase family AFK25_13935 SM00937 AFK25_13935 AFK25_13950 SM00357 Cold shock protein domain AFK25_13950 SM00382 ATPases associated with a variety of cellular activities AFK25_13950 SM00959 Rho termination factor, N-terminal domain AFK25_13975 SM00448 cheY-homologous receiver domain AFK25_14030 SM00155 Phospholipase D. Active site motifs. AFK25_14035 SM00836 DALR anticodon binding domain AFK25_14035 SM01016 Arginyl tRNA synthetase N terminal dom AFK25_14085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFK25_14150 SM00642 Alpha-amylase domain AFK25_14165 SM00986 Uracil DNA glycosylase superfamily AFK25_14165 SM00987 UreE urease accessory protein, C-terminal domain AFK25_14210 SM01133 AFK25_14210 AFK25_14225 SM00640 Glycosyl hydrolases family 32 AFK25_14240 SM01061 CAT RNA binding domain AFK25_14255 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AFK25_14255 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AFK25_14260 SM00382 ATPases associated with a variety of cellular activities AFK25_14270 SM00062 Bacterial periplasmic substrate-binding proteins AFK25_14270 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AFK25_14315 SM00382 ATPases associated with a variety of cellular activities AFK25_14335 SM00382 ATPases associated with a variety of cellular activities AFK25_14365 SM00387 Histidine kinase-like ATPases AFK25_14370 SM00421 helix_turn_helix, Lux Regulon AFK25_14370 SM00448 cheY-homologous receiver domain AFK25_14375 SM00382 ATPases associated with a variety of cellular activities AFK25_14430 SM00382 ATPases associated with a variety of cellular activities AFK25_14460 SM00857 Resolvase, N terminal domain AFK25_14515 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFK25_14520 SM00849 Metallo-beta-lactamase superfamily AFK25_14535 SM00091 PAS domain AFK25_14535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFK25_14535 SM00387 Histidine kinase-like ATPases AFK25_14535 SM00388 His Kinase A (phosphoacceptor) domain AFK25_14540 SM00448 cheY-homologous receiver domain AFK25_14540 SM00862 Transcriptional regulatory protein, C terminal AFK25_14555 SM00788 Adenylosuccinate synthetase AFK25_14570 SM00267 diguanylate cyclase AFK25_14620 SM00470 ParB-like nuclease domain AFK25_14630 SM00470 ParB-like nuclease domain AFK25_14640 SM01228 AFK25_14640 AFK25_14650 SM00393 Putative single-stranded nucleic acids-binding domain AFK25_14650 SM01245 AFK25_14650