GFC28_1004 SM00354 helix_turn _helix lactose operon repressor GFC28_1005 SM00347 helix_turn_helix multiple antibiotic resistance protein GFC28_1007 SM00354 helix_turn _helix lactose operon repressor GFC28_1011 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GFC28_1017 SM00849 Metallo-beta-lactamase superfamily GFC28_1018 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_1022 SM00331 Sigma factor PP2C-like phosphatases GFC28_103 SM00487 DEAD-like helicases superfamily GFC28_103 SM00490 helicase superfamily c-terminal domain GFC28_105 SM00257 Lysin motif GFC28_1053 SM00382 ATPases associated with a variety of cellular activities GFC28_1054 SM00382 ATPases associated with a variety of cellular activities GFC28_1055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_1058 SM00382 ATPases associated with a variety of cellular activities GFC28_1060 SM00342 helix_turn_helix, arabinose operon control protein GFC28_1060 SM00448 cheY-homologous receiver domain GFC28_1061 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_1061 SM00387 Histidine kinase-like ATPases GFC28_1063 SM00052 Putative diguanylate phosphodiesterase GFC28_1063 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. GFC28_1063 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) GFC28_1063 SM00091 PAS domain GFC28_1063 SM00267 diguanylate cyclase GFC28_1067 SM00357 Cold shock protein domain GFC28_1079 SM00257 Lysin motif GFC28_1082 SM00448 cheY-homologous receiver domain GFC28_1087 SM00861 Transketolase, pyrimidine binding domain GFC28_1089 SM00857 Resolvase, N terminal domain GFC28_1090 SM00257 Lysin motif GFC28_1100 SM00257 Lysin motif GFC28_1101 SM00047 Lysozyme subfamily 2 GFC28_1104 SM01022 GFC28_1104 GFC28_1108 SM01230 GFC28_1108 GFC28_1109 SM00422 helix_turn_helix, mercury resistance GFC28_1119 SM00382 ATPases associated with a variety of cellular activities GFC28_1122 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_1122 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_113 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFC28_1139 SM00382 ATPases associated with a variety of cellular activities GFC28_1141 SM00835 Cupin GFC28_1142 SM00835 Cupin GFC28_1147 SM00853 MutL C terminal dimerisation domain GFC28_1147 SM01340 GFC28_1147 GFC28_1148 SM00533 DNA-binding domain of DNA mismatch repair MUTS family GFC28_1148 SM00534 ATPase domain of DNA mismatch repair MUTS family GFC28_115 SM00870 GFC28_115 GFC28_1152 SM00729 Elongator protein 3, MiaB family, Radical SAM GFC28_1158 SM00322 K homology RNA-binding domain GFC28_1158 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GFC28_116 SM01298 GFC28_116 GFC28_1160 SM00382 ATPases associated with a variety of cellular activities GFC28_1161 SM00852 Probable molybdopterin binding domain GFC28_1163 SM00530 Helix-turn-helix XRE-family like proteins GFC28_1171 SM00382 ATPases associated with a variety of cellular activities GFC28_1173 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_1173 SM00866 GFC28_1173 GFC28_1174 SM00382 ATPases associated with a variety of cellular activities GFC28_1174 SM00843 GFC28_1174 GFC28_1177 SM00849 Metallo-beta-lactamase superfamily GFC28_1178 SM01130 GFC28_1178 GFC28_1180 SM00859 Semialdehyde dehydrogenase, NAD binding domain GFC28_1186 SM00316 Ribosomal protein S1-like RNA-binding domain GFC28_1186 SM00322 K homology RNA-binding domain GFC28_1187 SM01387 GFC28_1187 GFC28_1188 SM00904 Riboflavin kinase GFC28_1195 SM00316 Ribosomal protein S1-like RNA-binding domain GFC28_1195 SM00322 K homology RNA-binding domain GFC28_1197 SM00479 GFC28_1197 GFC28_1197 SM00481 DNA polymerase alpha chain like domain GFC28_1199 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GFC28_1213 SM00260 Two component signalling adaptor domain GFC28_1214 SM00073 Histidine Phosphotransfer domain GFC28_1214 SM00260 Two component signalling adaptor domain GFC28_1214 SM00387 Histidine kinase-like ATPases GFC28_1214 SM01231 GFC28_1214 GFC28_1215 SM00448 cheY-homologous receiver domain GFC28_1217 SM00962 SRP54-type protein, GTPase domain GFC28_1224 SM00448 cheY-homologous receiver domain GFC28_1234 SM00382 ATPases associated with a variety of cellular activities GFC28_1242 SM00382 ATPases associated with a variety of cellular activities GFC28_1242 SM01086 C-terminal, D2-small domain, of ClpB protein GFC28_1246 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain GFC28_1246 SM00437 Bacterial DNA topoisomerase I DNA-binding domain GFC28_1246 SM00493 GFC28_1246 GFC28_1248 SM00881 CoA binding domain GFC28_1261 SM00382 ATPases associated with a variety of cellular activities GFC28_1261 SM00962 SRP54-type protein, GTPase domain GFC28_1261 SM00963 SRP54-type protein, helical bundle domain GFC28_1263 SM00382 ATPases associated with a variety of cellular activities GFC28_1263 SM00962 SRP54-type protein, GTPase domain GFC28_1263 SM00963 SRP54-type protein, helical bundle domain GFC28_1264 SM00968 SMC proteins Flexible Hinge Domain GFC28_1265 SM00358 Double-stranded RNA binding motif GFC28_1265 SM00535 Ribonuclease III family GFC28_1267 SM00822 GFC28_1267 GFC28_1268 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. GFC28_127 SM00563 Phosphate acyltransferases GFC28_1271 SM00487 DEAD-like helicases superfamily GFC28_1271 SM00490 helicase superfamily c-terminal domain GFC28_1274 SM01120 GFC28_1274 GFC28_1274 SM01121 GFC28_1274 GFC28_1277 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain GFC28_128 SM00316 Ribosomal protein S1-like RNA-binding domain GFC28_1280 SM00220 Serine/Threonine protein kinases, catalytic domain GFC28_1280 SM00740 GFC28_1280 GFC28_1281 SM00331 Sigma factor PP2C-like phosphatases GFC28_1281 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain GFC28_1286 SM00487 DEAD-like helicases superfamily GFC28_1286 SM00490 helicase superfamily c-terminal domain GFC28_1288 SM01409 GFC28_1288 GFC28_1289 SM00072 Guanylate kinase homologues. GFC28_129 SM01240 GFC28_129 GFC28_1292 SM00831 Cation transporter/ATPase, N-terminus GFC28_1296 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family GFC28_1299 SM00851 MGS-like domain GFC28_1299 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GFC28_13 SM00260 Two component signalling adaptor domain GFC28_1300 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain GFC28_1305 SM00363 S4 RNA-binding domain GFC28_1309 SM00363 S4 RNA-binding domain GFC28_1318 SM00864 Tubulin/FtsZ family, GTPase domain GFC28_1318 SM00865 Tubulin/FtsZ family, C-terminal domain GFC28_1319 SM00842 Cell division protein FtsA GFC28_1330 SM00740 GFC28_1330 GFC28_1331 SM00740 GFC28_1331 GFC28_1341 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GFC28_1354 SM00116 Domain in cystathionine beta-synthase and other proteins. GFC28_1366 SM00878 Biotin carboxylase C-terminal domain GFC28_1370 SM00670 Large family of predicted nucleotide-binding domains GFC28_1376 SM00838 Elongation factor G C-terminus GFC28_138 SM00411 bacterial (prokaryotic) histone like domain GFC28_1389 SM00861 Transketolase, pyrimidine binding domain GFC28_1396 SM00849 Metallo-beta-lactamase superfamily GFC28_1411 SM00052 Putative diguanylate phosphodiesterase GFC28_1418 SM00260 Two component signalling adaptor domain GFC28_1418 SM00448 cheY-homologous receiver domain GFC28_1420 SM00387 Histidine kinase-like ATPases GFC28_1420 SM00388 His Kinase A (phosphoacceptor) domain GFC28_1424 SM00914 GFC28_1424 GFC28_1429 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_1429 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_1433 SM01061 CAT RNA binding domain GFC28_1438 SM00052 Putative diguanylate phosphodiesterase GFC28_1438 SM00091 PAS domain GFC28_1438 SM00267 diguanylate cyclase GFC28_144 SM00562 GFC28_144 GFC28_1443 SM00387 Histidine kinase-like ATPases GFC28_1443 SM00388 His Kinase A (phosphoacceptor) domain GFC28_145 SM00138 Methyltransferase, chemotaxis proteins GFC28_1450 SM00257 Lysin motif GFC28_1461 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_1464 SM00382 ATPases associated with a variety of cellular activities GFC28_1464 SM01086 C-terminal, D2-small domain, of ClpB protein GFC28_1467 SM00382 ATPases associated with a variety of cellular activities GFC28_1468 SM00382 ATPases associated with a variety of cellular activities GFC28_1473 SM00382 ATPases associated with a variety of cellular activities GFC28_1476 SM00347 helix_turn_helix multiple antibiotic resistance protein GFC28_1478 SM01007 Class II Aldolase and Adducin N-terminal domain GFC28_1486 SM00382 ATPases associated with a variety of cellular activities GFC28_1490 SM00091 PAS domain GFC28_1490 SM00387 Histidine kinase-like ATPases GFC28_1490 SM00388 His Kinase A (phosphoacceptor) domain GFC28_1491 SM00729 Elongator protein 3, MiaB family, Radical SAM GFC28_1502 SM00354 helix_turn _helix lactose operon repressor GFC28_1509 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain GFC28_1516 SM00346 helix_turn_helix isocitrate lyase regulation GFC28_1522 SM00046 Diacylglycerol kinase catalytic domain (presumed) GFC28_1525 SM00342 helix_turn_helix, arabinose operon control protein GFC28_1525 SM00871 Bacterial transcription activator, effector binding domain GFC28_1542 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_1542 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_1543 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GFC28_1547 SM00387 Histidine kinase-like ATPases GFC28_1548 SM00421 helix_turn_helix, Lux Regulon GFC28_1548 SM00448 cheY-homologous receiver domain GFC28_1553 SM00919 Malic enzyme, NAD binding domain GFC28_1553 SM01274 GFC28_1553 GFC28_1555 SM00870 GFC28_1555 GFC28_1556 SM00530 Helix-turn-helix XRE-family like proteins GFC28_1561 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_1572 SM00903 Flavin reductase like domain GFC28_1576 SM01130 GFC28_1576 GFC28_159 SM00028 Tetratricopeptide repeats GFC28_1590 SM00382 ATPases associated with a variety of cellular activities GFC28_1592 SM00530 Helix-turn-helix XRE-family like proteins GFC28_160 SM00914 GFC28_160 GFC28_1613 SM00861 Transketolase, pyrimidine binding domain GFC28_1620 SM00858 GFC28_1620 GFC28_1640 SM00487 DEAD-like helicases superfamily GFC28_1640 SM00490 helicase superfamily c-terminal domain GFC28_1648 SM00220 Serine/Threonine protein kinases, catalytic domain GFC28_1656 SM00382 ATPases associated with a variety of cellular activities GFC28_1667 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_1667 SM00387 Histidine kinase-like ATPases GFC28_1667 SM00388 His Kinase A (phosphoacceptor) domain GFC28_1668 SM00448 cheY-homologous receiver domain GFC28_1668 SM00862 Transcriptional regulatory protein, C terminal GFC28_1676 SM00422 helix_turn_helix, mercury resistance GFC28_1681 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GFC28_17 SM01350 GFC28_17 GFC28_170 SM00851 MGS-like domain GFC28_1703 SM00448 cheY-homologous receiver domain GFC28_1703 SM00862 Transcriptional regulatory protein, C terminal GFC28_1704 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_1704 SM00387 Histidine kinase-like ATPases GFC28_1704 SM00388 His Kinase A (phosphoacceptor) domain GFC28_1713 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GFC28_1714 SM00382 ATPases associated with a variety of cellular activities GFC28_1716 SM00062 Bacterial periplasmic substrate-binding proteins GFC28_1716 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. GFC28_1740 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GFC28_1750 SM00091 PAS domain GFC28_1750 SM00382 ATPases associated with a variety of cellular activities GFC28_1754 SM00849 Metallo-beta-lactamase superfamily GFC28_1775 SM00984 UDP binding domain GFC28_178 SM00479 GFC28_178 GFC28_178 SM00487 DEAD-like helicases superfamily GFC28_178 SM00491 GFC28_178 GFC28_1786 SM00954 Region found in RelA / SpoT proteins GFC28_1788 SM01118 GFC28_1788 GFC28_1795 SM00155 Phospholipase D. Active site motifs. GFC28_1800 SM00382 ATPases associated with a variety of cellular activities GFC28_1801 SM00382 ATPases associated with a variety of cellular activities GFC28_1809 SM00825 Beta-ketoacyl synthase GFC28_1815 SM00382 ATPases associated with a variety of cellular activities GFC28_1815 SM01086 C-terminal, D2-small domain, of ClpB protein GFC28_1818 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GFC28_1818 SM01209 GFC28_1818 GFC28_1819 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain GFC28_1823 SM00859 Semialdehyde dehydrogenase, NAD binding domain GFC28_1827 SM00852 Probable molybdopterin binding domain GFC28_1828 SM00729 Elongator protein 3, MiaB family, Radical SAM GFC28_1836 SM00421 helix_turn_helix, Lux Regulon GFC28_1836 SM00448 cheY-homologous receiver domain GFC28_1838 SM00382 ATPases associated with a variety of cellular activities GFC28_184 SM00478 endonuclease III GFC28_184 SM00525 GFC28_184 GFC28_1841 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_1841 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_1843 SM00316 Ribosomal protein S1-like RNA-binding domain GFC28_1846 SM01018 B12 binding domain GFC28_1848 SM00354 helix_turn _helix lactose operon repressor GFC28_1850 SM00642 Alpha-amylase domain GFC28_1854 SM00642 Alpha-amylase domain GFC28_1855 SM00342 helix_turn_helix, arabinose operon control protein GFC28_186 SM00060 Fibronectin type 3 domain GFC28_1887 SM00849 Metallo-beta-lactamase superfamily GFC28_1892 SM00354 helix_turn _helix lactose operon repressor GFC28_1902 SM00382 ATPases associated with a variety of cellular activities GFC28_1906 SM00347 helix_turn_helix multiple antibiotic resistance protein GFC28_1912 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GFC28_1914 SM00382 ATPases associated with a variety of cellular activities GFC28_1916 SM00729 Elongator protein 3, MiaB family, Radical SAM GFC28_1923 SM00382 ATPases associated with a variety of cellular activities GFC28_1926 SM00382 ATPases associated with a variety of cellular activities GFC28_1928 SM00062 Bacterial periplasmic substrate-binding proteins GFC28_1928 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. GFC28_1929 SM00116 Domain in cystathionine beta-synthase and other proteins. GFC28_1929 SM01091 Transporter associated domain GFC28_1937 SM00382 ATPases associated with a variety of cellular activities GFC28_1940 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase GFC28_1942 SM00642 Alpha-amylase domain GFC28_195 SM00448 cheY-homologous receiver domain GFC28_195 SM00862 Transcriptional regulatory protein, C terminal GFC28_1954 SM00450 Rhodanese Homology Domain GFC28_1954 SM00849 Metallo-beta-lactamase superfamily GFC28_1955 SM00450 Rhodanese Homology Domain GFC28_1956 SM00450 Rhodanese Homology Domain GFC28_1957 SM00450 Rhodanese Homology Domain GFC28_196 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_196 SM00387 Histidine kinase-like ATPases GFC28_196 SM00388 His Kinase A (phosphoacceptor) domain GFC28_1972 SM00421 helix_turn_helix, Lux Regulon GFC28_1972 SM00448 cheY-homologous receiver domain GFC28_1973 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. GFC28_1973 SM00387 Histidine kinase-like ATPases GFC28_1976 SM00116 Domain in cystathionine beta-synthase and other proteins. GFC28_1977 SM00642 Alpha-amylase domain GFC28_1982 SM01091 Transporter associated domain GFC28_1985 SM01321 GFC28_1985 GFC28_1991 SM00091 PAS domain GFC28_1991 SM00387 Histidine kinase-like ATPases GFC28_1992 SM00448 cheY-homologous receiver domain GFC28_1994 SM00387 Histidine kinase-like ATPases GFC28_1996 SM00382 ATPases associated with a variety of cellular activities GFC28_2000 SM00763 PrkA AAA domain GFC28_2004 SM00567 E-Z type HEAT repeats GFC28_2005 SM00873 B3/4 domain GFC28_204 SM00354 helix_turn _helix lactose operon repressor GFC28_2042 SM00382 ATPases associated with a variety of cellular activities GFC28_2053 SM00382 ATPases associated with a variety of cellular activities GFC28_2054 SM00382 ATPases associated with a variety of cellular activities GFC28_206 SM00267 diguanylate cyclase GFC28_2060 SM00478 endonuclease III GFC28_207 SM00052 Putative diguanylate phosphodiesterase GFC28_2075 SM00421 helix_turn_helix, Lux Regulon GFC28_2076 SM00052 Putative diguanylate phosphodiesterase GFC28_2093 SM00347 helix_turn_helix multiple antibiotic resistance protein GFC28_2102 SM01260 GFC28_2102 GFC28_2105 SM00382 ATPases associated with a variety of cellular activities GFC28_2109 SM00478 endonuclease III GFC28_2122 SM00226 Low molecular weight phosphatase family GFC28_2140 SM00052 Putative diguanylate phosphodiesterase GFC28_2140 SM00091 PAS domain GFC28_2140 SM00267 diguanylate cyclase GFC28_2147 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_2147 SM00895 GFC28_2147 GFC28_2157 SM00244 prohibitin homologues GFC28_2161 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain GFC28_2162 SM01092 CO dehydrogenase flavoprotein C-terminal domain GFC28_2165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_2165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_2169 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GFC28_2175 SM00382 ATPases associated with a variety of cellular activities GFC28_2182 SM00382 ATPases associated with a variety of cellular activities GFC28_2190 SM00387 Histidine kinase-like ATPases GFC28_2190 SM00388 His Kinase A (phosphoacceptor) domain GFC28_2190 SM00448 cheY-homologous receiver domain GFC28_2191 SM00448 cheY-homologous receiver domain GFC28_2191 SM01043 Bacterial transcriptional activator domain GFC28_2195 SM00046 Diacylglycerol kinase catalytic domain (presumed) GFC28_2200 SM00244 prohibitin homologues GFC28_2202 SM00448 cheY-homologous receiver domain GFC28_2202 SM00862 Transcriptional regulatory protein, C terminal GFC28_2203 SM00387 Histidine kinase-like ATPases GFC28_2203 SM00388 His Kinase A (phosphoacceptor) domain GFC28_2210 SM00382 ATPases associated with a variety of cellular activities GFC28_2220 SM00490 helicase superfamily c-terminal domain GFC28_2226 SM00116 Domain in cystathionine beta-synthase and other proteins. GFC28_2226 SM00382 ATPases associated with a variety of cellular activities GFC28_2228 SM00845 GatB domain GFC28_223 SM00357 Cold shock protein domain GFC28_2240 SM00861 Transketolase, pyrimidine binding domain GFC28_2242 SM00382 ATPases associated with a variety of cellular activities GFC28_2245 SM00382 ATPases associated with a variety of cellular activities GFC28_2248 SM00421 helix_turn_helix, Lux Regulon GFC28_2248 SM00448 cheY-homologous receiver domain GFC28_2252 SM00278 Helix-hairpin-helix DNA-binding motif class 1 GFC28_2252 SM00292 breast cancer carboxy-terminal domain GFC28_2252 SM00532 Ligase N family GFC28_2258 SM01209 GFC28_2258 GFC28_2258 SM01210 GFC28_2258 GFC28_2260 SM00798 AICARFT/IMPCHase bienzyme GFC28_2260 SM00851 MGS-like domain GFC28_2265 SM01211 GFC28_2265 GFC28_2268 SM00998 Adenylosuccinate lyase C-terminus GFC28_227 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GFC28_2270 SM01001 AIR carboxylase GFC28_2281 SM00460 Transglutaminase/protease-like homologues GFC28_2293 SM00646 GFC28_2293 GFC28_23 SM00855 Phosphoglycerate mutase family GFC28_2305 SM00257 Lysin motif GFC28_2344 SM00530 Helix-turn-helix XRE-family like proteins GFC28_2345 SM00530 Helix-turn-helix XRE-family like proteins GFC28_2348 SM00530 Helix-turn-helix XRE-family like proteins GFC28_2349 SM00530 Helix-turn-helix XRE-family like proteins GFC28_2350 SM00513 Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation GFC28_2352 SM00220 Serine/Threonine protein kinases, catalytic domain GFC28_2359 SM00883 Chaperonin 10 Kd subunit GFC28_2364 SM00881 CoA binding domain GFC28_2366 SM00382 ATPases associated with a variety of cellular activities GFC28_2389 SM00731 SprT homologues. GFC28_2391 SM00316 Ribosomal protein S1-like RNA-binding domain GFC28_2391 SM00732 Likely ribonuclease with RNase H fold. GFC28_2394 SM01005 Alanine racemase, C-terminal domain GFC28_2398 SM00487 DEAD-like helicases superfamily GFC28_2398 SM00490 helicase superfamily c-terminal domain GFC28_240 SM00382 ATPases associated with a variety of cellular activities GFC28_2406 SM00387 Histidine kinase-like ATPases GFC28_2407 SM00421 helix_turn_helix, Lux Regulon GFC28_2407 SM00448 cheY-homologous receiver domain GFC28_2426 SM00422 helix_turn_helix, mercury resistance GFC28_2430 SM00382 ATPases associated with a variety of cellular activities GFC28_2440 SM00342 helix_turn_helix, arabinose operon control protein GFC28_2442 SM00923 MbtH-like protein GFC28_2443 SM00823 Phosphopantetheine attachment site GFC28_2443 SM00824 Thioesterase GFC28_2447 SM00822 GFC28_2447 GFC28_2453 SM00530 Helix-turn-helix XRE-family like proteins GFC28_2456 SM00342 helix_turn_helix, arabinose operon control protein GFC28_2501 SM01251 GFC28_2501 GFC28_2504 SM00646 GFC28_2504 GFC28_2506 SM00028 Tetratricopeptide repeats GFC28_2508 SM00028 Tetratricopeptide repeats GFC28_2516 SM00382 ATPases associated with a variety of cellular activities GFC28_2517 SM00382 ATPases associated with a variety of cellular activities GFC28_2519 SM00662 RNA polymerases D GFC28_252 SM00091 PAS domain GFC28_252 SM00382 ATPases associated with a variety of cellular activities GFC28_2523 SM00316 Ribosomal protein S1-like RNA-binding domain GFC28_253 SM00849 Metallo-beta-lactamase superfamily GFC28_2536 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. GFC28_2537 SM01374 GFC28_2537 GFC28_2541 SM00322 K homology RNA-binding domain GFC28_2544 SM01382 GFC28_2544 GFC28_2544 SM01383 GFC28_2544 GFC28_2548 SM01403 GFC28_2548 GFC28_255 SM00098 Alkaline phosphatase homologues GFC28_2550 SM00838 Elongation factor G C-terminus GFC28_2550 SM00889 Elongation factor G, domain IV GFC28_2554 SM00663 RNA polymerase I subunit A N-terminus GFC28_2561 SM00649 Ribosomal protein L11/L12 GFC28_2562 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. GFC28_2562 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. GFC28_2564 SM00421 helix_turn_helix, Lux Regulon GFC28_2566 SM00967 RNA 2'-O ribose methyltransferase substrate binding GFC28_2567 SM00535 Ribonuclease III family GFC28_2568 SM00840 GFC28_2568 GFC28_2573 SM00670 Large family of predicted nucleotide-binding domains GFC28_2574 SM00382 ATPases associated with a variety of cellular activities GFC28_2575 SM00382 ATPases associated with a variety of cellular activities GFC28_2575 SM01086 C-terminal, D2-small domain, of ClpB protein GFC28_259 SM00091 PAS domain GFC28_259 SM00387 Histidine kinase-like ATPases GFC28_26 SM00849 Metallo-beta-lactamase superfamily GFC28_260 SM00448 cheY-homologous receiver domain GFC28_2601 SM00530 Helix-turn-helix XRE-family like proteins GFC28_2603 SM00905 Dihydroneopterin aldolase GFC28_2611 SM00382 ATPases associated with a variety of cellular activities GFC28_2613 SM00977 TilS substrate C-terminal domain GFC28_2614 SM00220 Serine/Threonine protein kinases, catalytic domain GFC28_2616 SM00331 Sigma factor PP2C-like phosphatases GFC28_2616 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain GFC28_2619 SM00316 Ribosomal protein S1-like RNA-binding domain GFC28_2623 SM00363 S4 RNA-binding domain GFC28_2626 SM00966 SpoVT / AbrB like domain GFC28_2627 SM00487 DEAD-like helicases superfamily GFC28_2627 SM00490 helicase superfamily c-terminal domain GFC28_2627 SM00982 GFC28_2627 GFC28_2627 SM01058 CarD-like/TRCF domain GFC28_2631 SM01400 GFC28_2631 GFC28_2640 SM00650 Ribosomal RNA adenine dimethylases GFC28_2641 SM00493 GFC28_2641 GFC28_2642 SM01208 GFC28_2642 GFC28_2645 SM00966 SpoVT / AbrB like domain GFC28_2664 SM00493 GFC28_2664 GFC28_2666 SM00382 ATPases associated with a variety of cellular activities GFC28_2668 SM00257 Lysin motif GFC28_2668 SM00636 GFC28_2668 GFC28_2675 SM00936 Penicillin-binding protein 5, C-terminal domain GFC28_2676 SM00116 Domain in cystathionine beta-synthase and other proteins. GFC28_2676 SM01240 GFC28_2676 GFC28_2685 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GFC28_2686 SM00434 DNA Topoisomerase IV GFC28_2687 SM00387 Histidine kinase-like ATPases GFC28_2687 SM00433 TopoisomeraseII GFC28_269 SM00382 ATPases associated with a variety of cellular activities GFC28_2690 SM00480 DNA polymerase III beta subunit GFC28_2691 SM00382 ATPases associated with a variety of cellular activities GFC28_2691 SM00760 Bacterial dnaA protein helix-turn-helix domain GFC28_2695 SM00322 K homology RNA-binding domain GFC28_2695 SM00393 Putative single-stranded nucleic acids-binding domain GFC28_2695 SM01245 GFC28_2695 GFC28_2697 SM01228 GFC28_2697 GFC28_2699 SM00470 ParB-like nuclease domain GFC28_2701 SM00470 ParB-like nuclease domain GFC28_2706 SM00926 Molybdopterin oxidoreductase Fe4S4 domain GFC28_2712 SM00267 diguanylate cyclase GFC28_2715 SM00788 Adenylosuccinate synthetase GFC28_2716 SM00448 cheY-homologous receiver domain GFC28_2716 SM00862 Transcriptional regulatory protein, C terminal GFC28_2717 SM00091 PAS domain GFC28_2717 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_2717 SM00387 Histidine kinase-like ATPases GFC28_2717 SM00388 His Kinase A (phosphoacceptor) domain GFC28_272 SM00354 helix_turn _helix lactose operon repressor GFC28_2720 SM00849 Metallo-beta-lactamase superfamily GFC28_2721 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GFC28_2724 SM00530 Helix-turn-helix XRE-family like proteins GFC28_2725 SM00347 helix_turn_helix multiple antibiotic resistance protein GFC28_2727 SM00382 ATPases associated with a variety of cellular activities GFC28_2738 SM00382 ATPases associated with a variety of cellular activities GFC28_2739 SM00382 ATPases associated with a variety of cellular activities GFC28_2745 SM00382 ATPases associated with a variety of cellular activities GFC28_2747 SM00062 Bacterial periplasmic substrate-binding proteins GFC28_2747 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. GFC28_2749 SM01002 Alanine dehydrogenase/PNT, C-terminal domain GFC28_2749 SM01003 Alanine dehydrogenase/PNT, N-terminal domain GFC28_2757 SM00986 Uracil DNA glycosylase superfamily GFC28_2757 SM00987 UreE urease accessory protein, C-terminal domain GFC28_2758 SM00642 Alpha-amylase domain GFC28_2768 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GFC28_2779 SM00836 DALR anticodon binding domain GFC28_2779 SM01016 Arginyl tRNA synthetase N terminal dom GFC28_2781 SM00155 Phospholipase D. Active site motifs. GFC28_2792 SM00448 cheY-homologous receiver domain GFC28_2797 SM00357 Cold shock protein domain GFC28_2797 SM00382 ATPases associated with a variety of cellular activities GFC28_2797 SM00959 Rho termination factor, N-terminal domain GFC28_2802 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. GFC28_2802 SM00387 Histidine kinase-like ATPases GFC28_2802 SM00388 His Kinase A (phosphoacceptor) domain GFC28_2803 SM00382 ATPases associated with a variety of cellular activities GFC28_2803 SM00448 cheY-homologous receiver domain GFC28_2805 SM00829 Enoylreductase GFC28_2806 SM00937 GFC28_2806 GFC28_2811 SM00226 Low molecular weight phosphatase family GFC28_2812 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_2812 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_2825 SM00382 ATPases associated with a variety of cellular activities GFC28_285 SM00487 DEAD-like helicases superfamily GFC28_285 SM00490 helicase superfamily c-terminal domain GFC28_2853 SM00354 helix_turn _helix lactose operon repressor GFC28_2861 SM00354 helix_turn _helix lactose operon repressor GFC28_2864 SM00382 ATPases associated with a variety of cellular activities GFC28_2868 SM00052 Putative diguanylate phosphodiesterase GFC28_2875 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_2875 SM00866 GFC28_2875 GFC28_2898 SM00487 DEAD-like helicases superfamily GFC28_2898 SM00490 helicase superfamily c-terminal domain GFC28_2904 SM00984 UDP binding domain GFC28_2905 SM00984 UDP binding domain GFC28_2910 SM00957 SecA DEAD-like domain GFC28_2910 SM00958 SecA preprotein cross-linking domain GFC28_2919 SM00382 ATPases associated with a variety of cellular activities GFC28_2935 SM00966 SpoVT / AbrB like domain GFC28_294 SM00342 helix_turn_helix, arabinose operon control protein GFC28_294 SM00448 cheY-homologous receiver domain GFC28_2947 SM01120 GFC28_2947 GFC28_2949 SM00091 PAS domain GFC28_2949 SM00382 ATPases associated with a variety of cellular activities GFC28_2955 SM00448 cheY-homologous receiver domain GFC28_2955 SM00862 Transcriptional regulatory protein, C terminal GFC28_2956 SM00387 Histidine kinase-like ATPases GFC28_2957 SM00382 ATPases associated with a variety of cellular activities GFC28_297 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain GFC28_2971 SM00382 ATPases associated with a variety of cellular activities GFC28_2972 SM00382 ATPases associated with a variety of cellular activities GFC28_2982 SM00047 Lysozyme subfamily 2 GFC28_2982 SM00287 Bacterial SH3 domain homologues GFC28_2984 SM00287 Bacterial SH3 domain homologues GFC28_2984 SM00646 GFC28_2984 GFC28_299 SM01092 CO dehydrogenase flavoprotein C-terminal domain GFC28_2993 SM00387 Histidine kinase-like ATPases GFC28_2994 SM00421 helix_turn_helix, Lux Regulon GFC28_2994 SM00448 cheY-homologous receiver domain GFC28_2996 SM00487 DEAD-like helicases superfamily GFC28_2996 SM00490 helicase superfamily c-terminal domain GFC28_3 SM00062 Bacterial periplasmic substrate-binding proteins GFC28_3 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. GFC28_30 SM00530 Helix-turn-helix XRE-family like proteins GFC28_3030 SM00957 SecA DEAD-like domain GFC28_3030 SM00958 SecA preprotein cross-linking domain GFC28_3031 SM00937 GFC28_3031 GFC28_3034 SM00382 ATPases associated with a variety of cellular activities GFC28_3039 SM00422 helix_turn_helix, mercury resistance GFC28_304 SM00382 ATPases associated with a variety of cellular activities GFC28_3041 SM01091 Transporter associated domain GFC28_3044 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GFC28_3046 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GFC28_3046 SM00245 tail specific protease GFC28_3056 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GFC28_3058 SM00487 DEAD-like helicases superfamily GFC28_3058 SM00490 helicase superfamily c-terminal domain GFC28_3059 SM00382 ATPases associated with a variety of cellular activities GFC28_3076 SM00028 Tetratricopeptide repeats GFC28_3089 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFC28_3093 SM01192 GFC28_3093 GFC28_3093 SM01193 GFC28_3093 GFC28_3097 SM00316 Ribosomal protein S1-like RNA-binding domain GFC28_3097 SM00357 Cold shock protein domain GFC28_3097 SM00955 GFC28_3097 GFC28_3099 SM00060 Fibronectin type 3 domain GFC28_310 SM00014 Acid phosphatase homologues GFC28_3100 SM00860 SMI1 / KNR4 family GFC28_3115 SM00382 ATPases associated with a variety of cellular activities GFC28_3122 SM00422 helix_turn_helix, mercury resistance GFC28_3124 SM00267 diguanylate cyclase GFC28_3125 SM00382 ATPases associated with a variety of cellular activities GFC28_3126 SM00382 ATPases associated with a variety of cellular activities GFC28_315 SM00382 ATPases associated with a variety of cellular activities GFC28_3159 SM00493 GFC28_3159 GFC28_3163 SM00382 ATPases associated with a variety of cellular activities GFC28_3163 SM00930 GFC28_3163 GFC28_3167 SM00382 ATPases associated with a variety of cellular activities GFC28_3178 SM00729 Elongator protein 3, MiaB family, Radical SAM GFC28_323 SM00382 ATPases associated with a variety of cellular activities GFC28_323 SM00930 GFC28_323 GFC28_3232 SM00479 GFC28_3232 GFC28_3238 SM00344 helix_turn_helix ASNC type GFC28_3240 SM00530 Helix-turn-helix XRE-family like proteins GFC28_3241 SM00316 Ribosomal protein S1-like RNA-binding domain GFC28_3246 SM00530 Helix-turn-helix XRE-family like proteins GFC28_3247 SM00530 Helix-turn-helix XRE-family like proteins GFC28_3258 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_3258 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_3281 SM00642 Alpha-amylase domain GFC28_329 SM00849 Metallo-beta-lactamase superfamily GFC28_3310 SM00382 ATPases associated with a variety of cellular activities GFC28_3324 SM00729 Elongator protein 3, MiaB family, Radical SAM GFC28_3328 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GFC28_3330 SM00450 Rhodanese Homology Domain GFC28_3332 SM00028 Tetratricopeptide repeats GFC28_3332 SM00530 Helix-turn-helix XRE-family like proteins GFC28_3338 SM00363 S4 RNA-binding domain GFC28_3339 SM00420 helix_turn_helix, Deoxyribose operon repressor GFC28_3346 SM00642 Alpha-amylase domain GFC28_3350 SM00849 Metallo-beta-lactamase superfamily GFC28_3357 SM00382 ATPases associated with a variety of cellular activities GFC28_3357 SM00843 GFC28_3357 GFC28_3364 SM00842 Cell division protein FtsA GFC28_3365 SM00830 Chorismate mutase type II GFC28_3366 SM00354 helix_turn _helix lactose operon repressor GFC28_3368 SM00116 Domain in cystathionine beta-synthase and other proteins. GFC28_3372 SM00363 S4 RNA-binding domain GFC28_3373 SM00363 S4 RNA-binding domain GFC28_3373 SM01390 GFC28_3373 GFC28_3374 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. GFC28_3374 SM00267 diguanylate cyclase GFC28_3375 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. GFC28_3379 SM00981 GFC28_3379 GFC28_3390 SM00852 Probable molybdopterin binding domain GFC28_3398 SM01002 Alanine dehydrogenase/PNT, C-terminal domain GFC28_3398 SM01003 Alanine dehydrogenase/PNT, N-terminal domain GFC28_3400 SM00849 Metallo-beta-lactamase superfamily GFC28_3401 SM00116 Domain in cystathionine beta-synthase and other proteins. GFC28_3406 SM00481 DNA polymerase alpha chain like domain GFC28_3408 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_3417 SM01329 GFC28_3417 GFC28_342 SM00382 ATPases associated with a variety of cellular activities GFC28_3420 SM00448 cheY-homologous receiver domain GFC28_3420 SM00862 Transcriptional regulatory protein, C terminal GFC28_3421 SM00091 PAS domain GFC28_3421 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_3421 SM00387 Histidine kinase-like ATPases GFC28_3421 SM00388 His Kinase A (phosphoacceptor) domain GFC28_3422 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs GFC28_3422 SM00474 3'-5' exonuclease GFC28_3422 SM00475 5'-3' exonuclease GFC28_3422 SM00482 DNA polymerase A domain GFC28_3423 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain GFC28_3423 SM01232 GFC28_3423 GFC28_3425 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFC28_3432 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain GFC28_3442 SM00967 RNA 2'-O ribose methyltransferase substrate binding GFC28_3445 SM00873 B3/4 domain GFC28_3445 SM00874 tRNA synthetase B5 domain GFC28_3445 SM00896 Ferredoxin-fold anticodon binding domain GFC28_3446 SM00382 ATPases associated with a variety of cellular activities GFC28_3448 SM00347 helix_turn_helix multiple antibiotic resistance protein GFC28_3453 SM00278 Helix-hairpin-helix DNA-binding motif class 1 GFC28_3453 SM00481 DNA polymerase alpha chain like domain GFC28_3453 SM00483 DNA polymerase X family GFC28_3454 SM00463 Small MutS-related domain GFC28_3454 SM00533 DNA-binding domain of DNA mismatch repair MUTS family GFC28_3454 SM00534 ATPase domain of DNA mismatch repair MUTS family GFC28_3459 SM00893 Electron transfer flavoprotein domain GFC28_346 SM01007 Class II Aldolase and Adducin N-terminal domain GFC28_3460 SM00893 Electron transfer flavoprotein domain GFC28_3469 SM00465 GIY-YIG type nucleases (URI domain) GFC28_3476 SM00421 helix_turn_helix, Lux Regulon GFC28_3477 SM00347 helix_turn_helix multiple antibiotic resistance protein GFC28_3479 SM00909 Sporulation and spore germination GFC28_3488 SM00917 LeuA allosteric (dimerisation) domain GFC28_3489 SM01329 GFC28_3489 GFC28_349 SM00420 helix_turn_helix, Deoxyribose operon repressor GFC28_349 SM01134 GFC28_349 GFC28_3494 SM00382 ATPases associated with a variety of cellular activities GFC28_3494 SM00994 ClpX C4-type zinc finger GFC28_3494 SM01086 C-terminal, D2-small domain, of ClpB protein GFC28_3495 SM00382 ATPases associated with a variety of cellular activities GFC28_3496 SM00382 ATPases associated with a variety of cellular activities GFC28_3496 SM00464 Found in ATP-dependent protease La (LON) GFC28_3503 SM01004 Delta-aminolevulinic acid dehydratase GFC28_3505 SM00257 Lysin motif GFC28_3510 SM00635 Bacterial Ig-like domain 2 GFC28_3511 SM00248 ankyrin repeats GFC28_3518 SM00382 ATPases associated with a variety of cellular activities GFC28_3519 SM00382 ATPases associated with a variety of cellular activities GFC28_352 SM00829 Enoylreductase GFC28_3540 SM01317 GFC28_3540 GFC28_3548 SM00422 helix_turn_helix, mercury resistance GFC28_355 SM00342 helix_turn_helix, arabinose operon control protein GFC28_3558 SM00257 Lysin motif GFC28_3565 SM00278 Helix-hairpin-helix DNA-binding motif class 1 GFC28_3566 SM00382 ATPases associated with a variety of cellular activities GFC28_3570 SM01323 GFC28_3570 GFC28_3578 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GFC28_3578 SM00954 Region found in RelA / SpoT proteins GFC28_3580 SM00287 Bacterial SH3 domain homologues GFC28_3580 SM00646 GFC28_3580 GFC28_3586 SM00382 ATPases associated with a variety of cellular activities GFC28_3591 SM00028 Tetratricopeptide repeats GFC28_3591 SM00671 Sel1-like repeats. GFC28_3596 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain GFC28_3598 SM00732 Likely ribonuclease with RNase H fold. GFC28_3614 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. GFC28_364 SM00267 diguanylate cyclase GFC28_3642 SM01103 GFC28_3642 GFC28_3644 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GFC28_3648 SM00278 Helix-hairpin-helix DNA-binding motif class 1 GFC28_365 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_365 SM00895 GFC28_365 GFC28_3650 SM00849 Metallo-beta-lactamase superfamily GFC28_3657 SM00838 Elongation factor G C-terminus GFC28_3658 SM00729 Elongator protein 3, MiaB family, Radical SAM GFC28_3662 SM00271 DnaJ molecular chaperone homology domain GFC28_3665 SM00729 Elongator protein 3, MiaB family, Radical SAM GFC28_3666 SM01133 GFC28_3666 GFC28_3679 SM00116 Domain in cystathionine beta-synthase and other proteins. GFC28_3679 SM00420 helix_turn_helix, Deoxyribose operon repressor GFC28_3683 SM00400 zinc finger GFC28_3683 SM00493 GFC28_3683 GFC28_3691 SM00487 DEAD-like helicases superfamily GFC28_3691 SM00490 helicase superfamily c-terminal domain GFC28_3692 SM00518 AP endonuclease family 2 GFC28_3694 SM00382 ATPases associated with a variety of cellular activities GFC28_3706 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_3706 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_3710 SM00382 ATPases associated with a variety of cellular activities GFC28_3727 SM00631 GFC28_3727 GFC28_373 SM00530 Helix-turn-helix XRE-family like proteins GFC28_3731 SM00849 Metallo-beta-lactamase superfamily GFC28_3735 SM00382 ATPases associated with a variety of cellular activities GFC28_3745 SM00487 DEAD-like helicases superfamily GFC28_3745 SM00490 helicase superfamily c-terminal domain GFC28_3749 SM00450 Rhodanese Homology Domain GFC28_375 SM00052 Putative diguanylate phosphodiesterase GFC28_3753 SM00507 HNH nucleases GFC28_3755 SM00257 Lysin motif GFC28_3755 SM00636 GFC28_3755 GFC28_3757 SM00529 Helix-turn-helix diphteria tox regulatory element GFC28_3764 SM00841 Elongation factor P, C-terminal GFC28_3764 SM01185 GFC28_3764 GFC28_3766 SM00382 ATPases associated with a variety of cellular activities GFC28_3775 SM00878 Biotin carboxylase C-terminal domain GFC28_3782 SM00861 Transketolase, pyrimidine binding domain GFC28_3783 SM00363 S4 RNA-binding domain GFC28_3786 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GFC28_3787 SM00448 cheY-homologous receiver domain GFC28_3793 SM00091 PAS domain GFC28_3793 SM00382 ATPases associated with a variety of cellular activities GFC28_3795 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFC28_3799 SM00861 Transketolase, pyrimidine binding domain GFC28_380 SM00829 Enoylreductase GFC28_3807 SM00530 Helix-turn-helix XRE-family like proteins GFC28_400 SM01245 GFC28_400 GFC28_402 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs GFC28_402 SM00475 5'-3' exonuclease GFC28_405 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_407 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase GFC28_410 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_427 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFC28_429 SM00861 Transketolase, pyrimidine binding domain GFC28_44 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain GFC28_443 SM00479 GFC28_443 GFC28_448 SM00382 ATPases associated with a variety of cellular activities GFC28_450 SM00052 Putative diguanylate phosphodiesterase GFC28_450 SM00091 PAS domain GFC28_450 SM00267 diguanylate cyclase GFC28_451 SM00855 Phosphoglycerate mutase family GFC28_454 SM00899 GFC28_454 GFC28_46 SM00936 Penicillin-binding protein 5, C-terminal domain GFC28_460 SM00422 helix_turn_helix, mercury resistance GFC28_470 SM01126 GFC28_470 GFC28_477 SM00257 Lysin motif GFC28_479 SM00796 Allophanate hydrolase subunit 1 GFC28_48 SM00387 Histidine kinase-like ATPases GFC28_480 SM00797 Allophanate hydrolase subunit 2 GFC28_493 SM00318 Staphylococcal nuclease homologues GFC28_494 SM00387 Histidine kinase-like ATPases GFC28_494 SM00388 His Kinase A (phosphoacceptor) domain GFC28_496 SM00448 cheY-homologous receiver domain GFC28_496 SM00862 Transcriptional regulatory protein, C terminal GFC28_497 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_497 SM00387 Histidine kinase-like ATPases GFC28_497 SM00388 His Kinase A (phosphoacceptor) domain GFC28_499 SM00487 DEAD-like helicases superfamily GFC28_499 SM00490 helicase superfamily c-terminal domain GFC28_5 SM00382 ATPases associated with a variety of cellular activities GFC28_509 SM00052 Putative diguanylate phosphodiesterase GFC28_509 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) GFC28_509 SM00091 PAS domain GFC28_509 SM00267 diguanylate cyclase GFC28_510 SM00981 GFC28_510 GFC28_529 SM00491 GFC28_529 GFC28_531 SM00060 Fibronectin type 3 domain GFC28_562 SM00450 Rhodanese Homology Domain GFC28_574 SM00729 Elongator protein 3, MiaB family, Radical SAM GFC28_574 SM00876 Biotin and Thiamin Synthesis associated domain GFC28_577 SM00882 Coenzyme A transferase GFC28_578 SM00882 Coenzyme A transferase GFC28_587 SM00219 Tyrosine kinase, catalytic domain GFC28_603 SM00387 Histidine kinase-like ATPases GFC28_603 SM00388 His Kinase A (phosphoacceptor) domain GFC28_604 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain GFC28_619 SM00878 Biotin carboxylase C-terminal domain GFC28_624 SM00347 helix_turn_helix multiple antibiotic resistance protein GFC28_635 SM00382 ATPases associated with a variety of cellular activities GFC28_638 SM00710 Parallel beta-helix repeats GFC28_638 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses GFC28_640 SM00387 Histidine kinase-like ATPases GFC28_640 SM00388 His Kinase A (phosphoacceptor) domain GFC28_641 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_645 SM00382 ATPases associated with a variety of cellular activities GFC28_647 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GFC28_650 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) GFC28_650 SM00091 PAS domain GFC28_650 SM00331 Sigma factor PP2C-like phosphatases GFC28_651 SM00382 ATPases associated with a variety of cellular activities GFC28_652 SM00382 ATPases associated with a variety of cellular activities GFC28_658 SM01230 GFC28_658 GFC28_661 SM00354 helix_turn _helix lactose operon repressor GFC28_662 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family GFC28_664 SM00849 Metallo-beta-lactamase superfamily GFC28_666 SM00382 ATPases associated with a variety of cellular activities GFC28_672 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GFC28_681 SM00422 helix_turn_helix, mercury resistance GFC28_684 SM00861 Transketolase, pyrimidine binding domain GFC28_689 SM01266 GFC28_689 GFC28_690 SM00646 GFC28_690 GFC28_696 SM00382 ATPases associated with a variety of cellular activities GFC28_697 SM00382 ATPases associated with a variety of cellular activities GFC28_701 SM00752 Horizontally Transferred TransMembrane Domain GFC28_711 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_711 SM00866 GFC28_711 GFC28_714 SM00052 Putative diguanylate phosphodiesterase GFC28_715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_719 SM00382 ATPases associated with a variety of cellular activities GFC28_722 SM00829 Enoylreductase GFC28_726 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain GFC28_726 SM00437 Bacterial DNA topoisomerase I DNA-binding domain GFC28_726 SM00493 GFC28_726 GFC28_74 SM00363 S4 RNA-binding domain GFC28_743 SM00861 Transketolase, pyrimidine binding domain GFC28_746 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_750 SM00382 ATPases associated with a variety of cellular activities GFC28_751 SM00382 ATPases associated with a variety of cellular activities GFC28_757 SM00422 helix_turn_helix, mercury resistance GFC28_759 SM00344 helix_turn_helix ASNC type GFC28_761 SM00382 ATPases associated with a variety of cellular activities GFC28_765 SM00926 Molybdopterin oxidoreductase Fe4S4 domain GFC28_776 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GFC28_778 SM00226 Low molecular weight phosphatase family GFC28_779 SM00347 helix_turn_helix multiple antibiotic resistance protein GFC28_78 SM00448 cheY-homologous receiver domain GFC28_78 SM00862 Transcriptional regulatory protein, C terminal GFC28_785 SM00632 GFC28_785 GFC28_785 SM00642 Alpha-amylase domain GFC28_785 SM01065 Starch binding domain GFC28_79 SM00091 PAS domain GFC28_79 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_79 SM00387 Histidine kinase-like ATPases GFC28_79 SM00388 His Kinase A (phosphoacceptor) domain GFC28_795 SM00327 von Willebrand factor (vWF) type A domain GFC28_796 SM00382 ATPases associated with a variety of cellular activities GFC28_80 SM00387 Histidine kinase-like ATPases GFC28_80 SM00388 His Kinase A (phosphoacceptor) domain GFC28_808 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_808 SM00866 GFC28_808 GFC28_809 SM00642 Alpha-amylase domain GFC28_81 SM00448 cheY-homologous receiver domain GFC28_81 SM00862 Transcriptional regulatory protein, C terminal GFC28_814 SM00434 DNA Topoisomerase IV GFC28_815 SM00387 Histidine kinase-like ATPases GFC28_815 SM00433 TopoisomeraseII GFC28_816 SM00881 CoA binding domain GFC28_82 SM00382 ATPases associated with a variety of cellular activities GFC28_821 SM00833 Cobalamin synthesis protein cobW C-terminal domain GFC28_830 SM00871 Bacterial transcription activator, effector binding domain GFC28_842 SM01207 GFC28_842 GFC28_86 SM00382 ATPases associated with a variety of cellular activities GFC28_860 SM00567 E-Z type HEAT repeats GFC28_860 SM00932 Scaffold protein Nfu/NifU N terminal GFC28_861 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GFC28_883 SM00382 ATPases associated with a variety of cellular activities GFC28_892 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain GFC28_892 SM00437 Bacterial DNA topoisomerase I DNA-binding domain GFC28_892 SM00493 GFC28_892 GFC28_900 SM00387 Histidine kinase-like ATPases GFC28_900 SM00388 His Kinase A (phosphoacceptor) domain GFC28_907 SM00420 helix_turn_helix, Deoxyribose operon repressor GFC28_907 SM01134 GFC28_907 GFC28_908 SM00267 diguanylate cyclase GFC28_908 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GFC28_91 SM00855 Phosphoglycerate mutase family GFC28_912 SM00422 helix_turn_helix, mercury resistance GFC28_915 SM00448 cheY-homologous receiver domain GFC28_915 SM00850 LytTr DNA-binding domain GFC28_916 SM00387 Histidine kinase-like ATPases GFC28_932 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_932 SM00895 GFC28_932 GFC28_939 SM00633 Glycosyl hydrolase family 10 GFC28_945 SM00342 helix_turn_helix, arabinose operon control protein GFC28_945 SM00448 cheY-homologous receiver domain GFC28_946 SM00387 Histidine kinase-like ATPases GFC28_952 SM00382 ATPases associated with a variety of cellular activities GFC28_957 SM01007 Class II Aldolase and Adducin N-terminal domain GFC28_958 SM00345 helix_turn_helix gluconate operon transcriptional repressor GFC28_960 SM00382 ATPases associated with a variety of cellular activities GFC28_962 SM00342 helix_turn_helix, arabinose operon control protein GFC28_962 SM00448 cheY-homologous receiver domain GFC28_963 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GFC28_963 SM00387 Histidine kinase-like ATPases GFC28_965 SM00342 helix_turn_helix, arabinose operon control protein GFC28_965 SM00871 Bacterial transcription activator, effector binding domain GFC28_968 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_969 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GFC28_973 SM00382 ATPases associated with a variety of cellular activities GFC28_974 SM00062 Bacterial periplasmic substrate-binding proteins GFC28_974 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. GFC28_977 SM00387 Histidine kinase-like ATPases GFC28_978 SM00448 cheY-homologous receiver domain