locus-tag class description APS55_00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00015 IPR017871 ABC transporter, conserved site APS55_00015 IPR003439 ABC transporter-like APS55_00015 IPR003593 AAA+ ATPase domain APS55_00020 IPR004872 Lipoprotein NlpA family APS55_00025 IPR035906 MetI-like superfamily APS55_00025 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_00030 IPR003593 AAA+ ATPase domain APS55_00030 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain APS55_00030 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal APS55_00030 IPR017871 ABC transporter, conserved site APS55_00030 IPR003439 ABC transporter-like APS55_00030 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00030 IPR018449 NIL domain APS55_00035 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA APS55_00035 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site APS55_00035 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB APS55_00045 IPR004753 Cell shape determining protein MreB APS55_00050 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase APS55_00050 IPR036968 Enolpyruvate transferase domain superfamily APS55_00050 IPR001986 Enolpyruvate transferase domain APS55_00050 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta APS55_00060 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal APS55_00060 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain APS55_00060 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily APS55_00060 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit APS55_00060 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal APS55_00065 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily APS55_00065 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain APS55_00065 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal APS55_00065 IPR003593 AAA+ ATPase domain APS55_00065 IPR005722 ATP synthase, F1 complex, beta subunit APS55_00065 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site APS55_00065 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain APS55_00065 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00070 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily APS55_00070 IPR000131 ATP synthase, F1 complex, gamma subunit APS55_00075 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain APS55_00075 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00075 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily APS55_00075 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily APS55_00075 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site APS55_00075 IPR000793 ATP synthase, alpha subunit, C-terminal APS55_00075 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily APS55_00075 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain APS55_00075 IPR005294 ATP synthase, F1 complex, alpha subunit APS55_00075 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain APS55_00080 IPR000711 ATPase, OSCP/delta subunit APS55_00080 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily APS55_00080 IPR020781 ATPase, OSCP/delta subunit, conserved site APS55_00085 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast APS55_00085 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily APS55_00085 IPR005864 ATP synthase, F0 complex, subunit b, bacterial APS55_00090 IPR000454 ATP synthase, F0 complex, subunit C APS55_00090 IPR038662 F1F0 ATP synthase subunit C superfamily APS55_00090 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast APS55_00090 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site APS55_00090 IPR002379 V-ATPase proteolipid subunit C-like domain APS55_00090 IPR035921 F/V-ATP synthase subunit C superfamily APS55_00095 IPR000568 ATP synthase, F0 complex, subunit A APS55_00095 IPR035908 ATP synthase, F0 complex, subunit A superfamily APS55_00100 IPR034332 Uracil phosphoribosyltransferase, bacterial-type APS55_00100 IPR005765 Uracil phosphoribosyl transferase APS55_00100 IPR000836 Phosphoribosyltransferase domain APS55_00100 IPR029057 Phosphoribosyltransferase-like APS55_00105 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_00105 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_00105 IPR001085 Serine hydroxymethyltransferase APS55_00105 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site APS55_00105 IPR039429 Serine hydroxymethyltransferase-like domain APS55_00105 IPR015424 Pyridoxal phosphate-dependent transferase APS55_00110 IPR006070 YrdC-like domain APS55_00110 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily APS55_00110 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily APS55_00110 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 APS55_00110 IPR005145 Putative GTP-binding controlling metal-binding domain APS55_00115 IPR007848 Methyltransferase small domain APS55_00115 IPR002052 DNA methylase, N-6 adenine-specific, conserved site APS55_00115 IPR004556 Methyltransferase HemK-like APS55_00115 IPR040758 Release factor glutamine methyltransferase, N-terminal domain APS55_00115 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_00115 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific APS55_00120 IPR005139 Peptide chain release factor APS55_00120 IPR000352 Peptide chain release factor class I APS55_00120 IPR004373 Peptide chain release factor 1 APS55_00125 IPR020633 Thymidine kinase, conserved site APS55_00125 IPR001267 Thymidine kinase APS55_00125 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00130 IPR036565 Mur-like, catalytic domain superfamily APS55_00130 IPR013221 Mur ligase, central APS55_00130 IPR013564 Domain of unknown function DUF1727 APS55_00135 IPR029062 Class I glutamine amidotransferase-like APS55_00135 IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 APS55_00135 IPR017929 CobB/CobQ glutamine amidotransferase APS55_00135 IPR011698 CobB/CobQ-like glutamine amidotransferase APS55_00140 IPR012338 Beta-lactamase/transpeptidase-like APS55_00140 IPR001466 Beta-lactamase-related APS55_00145 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00145 IPR003439 ABC transporter-like APS55_00145 IPR036640 ABC transporter type 1, transmembrane domain superfamily APS55_00145 IPR011527 ABC transporter type 1, transmembrane domain APS55_00145 IPR003593 AAA+ ATPase domain APS55_00145 IPR039421 Type I protein exporter APS55_00150 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00150 IPR039421 Type I protein exporter APS55_00150 IPR017871 ABC transporter, conserved site APS55_00150 IPR003439 ABC transporter-like APS55_00150 IPR036640 ABC transporter type 1, transmembrane domain superfamily APS55_00150 IPR011527 ABC transporter type 1, transmembrane domain APS55_00150 IPR003593 AAA+ ATPase domain APS55_00165 IPR000868 Isochorismatase-like APS55_00165 IPR036380 Isochorismatase-like superfamily APS55_00175 IPR009732 Protein of unknown function DUF1304 APS55_00350 IPR002052 DNA methylase, N-6 adenine-specific, conserved site APS55_00350 IPR001091 Restriction/modification DNA-methylase APS55_00350 IPR002941 DNA methylase N-4/N-6 APS55_00350 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_00400 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein APS55_00400 IPR002611 IstB-like ATP-binding protein APS55_00400 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00410 IPR000424 Primosome PriB/single-strand DNA-binding APS55_00410 IPR012340 Nucleic acid-binding, OB-fold APS55_00410 IPR011344 Single-stranded DNA-binding protein APS55_00465 IPR036390 Winged helix DNA-binding domain superfamily APS55_00465 IPR036286 LexA/Signal peptidase-like superfamily APS55_00465 IPR039418 LexA-like APS55_00465 IPR006200 Transcription regulator LexA APS55_00465 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_00465 IPR006197 Peptidase S24, LexA-like APS55_00465 IPR015927 Peptidase S24/S26A/S26B/S26C APS55_00465 IPR006199 LexA repressor, DNA-binding domain APS55_00530 IPR008258 Transglycosylase SLT domain 1 APS55_00530 IPR023346 Lysozyme-like domain superfamily APS55_00545 IPR036397 Ribonuclease H superfamily APS55_00545 IPR038965 Transposase InsF-like APS55_00545 IPR001584 Integrase, catalytic core APS55_00545 IPR012337 Ribonuclease H-like superfamily APS55_00560 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase APS55_00560 IPR014043 Acyl transferase APS55_00560 IPR036736 ACP-like superfamily APS55_00560 IPR001227 Acyl transferase domain superfamily APS55_00560 IPR011032 GroES-like superfamily APS55_00560 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding APS55_00560 IPR013154 Alcohol dehydrogenase, N-terminal APS55_00560 IPR020807 Polyketide synthase, dehydratase domain APS55_00560 IPR036291 NAD(P)-binding domain superfamily APS55_00560 IPR006162 Phosphopantetheine attachment site APS55_00560 IPR009081 Phosphopantetheine binding ACP domain APS55_00560 IPR020843 Polyketide synthase, enoylreductase domain APS55_00560 IPR013968 Polyketide synthase, ketoreductase domain APS55_00560 IPR020806 Polyketide synthase, phosphopantetheine-binding domain APS55_00560 IPR042104 Polyketide synthase, dehydratase domain superfamily APS55_00565 IPR037479 Tautomerase, MSAD family APS55_00565 IPR014347 Tautomerase/MIF superfamily APS55_00570 IPR012340 Nucleic acid-binding, OB-fold APS55_00570 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type APS55_00570 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) APS55_00570 IPR004522 Asparagine-tRNA ligase APS55_00570 IPR006195 Aminoacyl-tRNA synthetase, class II APS55_00570 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb APS55_00575 IPR029039 Flavoprotein-like superfamily APS55_00575 IPR003680 Flavodoxin-like fold APS55_00580 IPR036397 Ribonuclease H superfamily APS55_00580 IPR012337 Ribonuclease H-like superfamily APS55_00580 IPR001584 Integrase, catalytic core APS55_00580 IPR038965 Transposase InsF-like APS55_00580 IPR025948 HTH-like domain APS55_00600 IPR010651 Sugar transport protein APS55_00610 IPR020846 Major facilitator superfamily domain APS55_00610 IPR036259 MFS transporter superfamily APS55_00610 IPR023721 Multidrug resistance protein MdtD APS55_00610 IPR011701 Major facilitator superfamily APS55_00610 IPR004638 Drug resistance transporter EmrB-like APS55_00615 IPR002347 Short-chain dehydrogenase/reductase SDR APS55_00615 IPR036291 NAD(P)-binding domain superfamily APS55_00615 IPR020904 Short-chain dehydrogenase/reductase, conserved site APS55_00625 IPR003855 Potassium transporter APS55_00625 IPR023051 Potassium uptake protein, low affinity, Kup APS55_00630 IPR015424 Pyridoxal phosphate-dependent transferase APS55_00630 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_00630 IPR004839 Aminotransferase, class I/classII APS55_00630 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_00650 IPR036779 LysM domain superfamily APS55_00650 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain APS55_00650 IPR018392 LysM domain APS55_00655 IPR035466 GlmS/AgaS, SIS domain 1 APS55_00655 IPR029055 Nucleophile aminohydrolases, N-terminal APS55_00655 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising APS55_00655 IPR035490 GlmS/FrlB, SIS domain 2 APS55_00655 IPR017932 Glutamine amidotransferase type 2 domain APS55_00655 IPR001347 Sugar isomerase (SIS) APS55_00660 IPR006352 Phosphoglucosamine mutase, bacterial type APS55_00660 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily APS55_00660 IPR005843 Alpha-D-phosphohexomutase, C-terminal APS55_00660 IPR005841 Alpha-D-phosphohexomutase superfamily APS55_00660 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I APS55_00660 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III APS55_00660 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II APS55_00660 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III APS55_00660 IPR016066 Alpha-D-phosphohexomutase, conserved site APS55_00665 IPR012505 YbbR-like APS55_00670 IPR014046 Diadenylate cyclase APS55_00670 IPR034701 Diadenylate cyclase CdaA APS55_00670 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily APS55_00670 IPR003390 DNA integrity scanning protein, DisA, N-terminal APS55_00680 IPR006153 Cation/H+ exchanger APS55_00680 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria APS55_00680 IPR018422 Cation/H+ exchanger, CPA1 family APS55_00685 IPR016166 FAD-binding domain, PCMH-type APS55_00685 IPR036318 FAD-binding, type PCMH-like superfamily APS55_00685 IPR016167 FAD-binding, type PCMH, subdomain 1 APS55_00685 IPR006094 FAD linked oxidase, N-terminal APS55_00685 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily APS55_00685 IPR016169 FAD-binding, type PCMH, subdomain 2 APS55_00685 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase APS55_00685 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal APS55_00690 IPR012340 Nucleic acid-binding, OB-fold APS55_00690 IPR040982 DNA polymerase III alpha subunit finger domain APS55_00690 IPR029460 DNA polymerase, helix-hairpin-helix motif APS55_00690 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain APS55_00690 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type APS55_00690 IPR003141 Polymerase/histidinol phosphatase, N-terminal APS55_00690 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain APS55_00690 IPR028112 DNA polymerase III polC-type, N-terminal domain I APS55_00690 IPR013520 Exonuclease, RNase T/DNA polymerase III APS55_00690 IPR004013 PHP domain APS55_00690 IPR024754 DNA polymerase III polC-like, N-terminal domain II APS55_00690 IPR036397 Ribonuclease H superfamily APS55_00690 IPR012337 Ribonuclease H-like superfamily APS55_00700 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00700 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE APS55_00705 IPR042112 Phosphate acetyltransferase, domain 2 APS55_00705 IPR004614 Phosphate acetyltransferase APS55_00705 IPR012147 Phosphate acetyl/butyryltransferase APS55_00705 IPR002505 Phosphate acetyl/butaryl transferase APS55_00705 IPR042113 Phosphate acetyltransferase, domain 1 APS55_00710 IPR036895 Uracil-DNA glycosylase-like domain superfamily APS55_00710 IPR005122 Uracil-DNA glycosylase-like APS55_00710 IPR018085 Uracil-DNA glycosylase, active site APS55_00710 IPR002043 Uracil-DNA glycosylase family 1 APS55_00715 IPR020081 SsrA-binding protein, conserved site APS55_00715 IPR023620 Small protein B APS55_00715 IPR000037 SsrA-binding protein APS55_00720 IPR040476 RNase II/RNase R, cold shock domain APS55_00720 IPR012340 Nucleic acid-binding, OB-fold APS55_00720 IPR003029 S1 domain APS55_00720 IPR022967 RNA-binding domain, S1 APS55_00720 IPR011805 Ribonuclease R APS55_00720 IPR004476 Ribonuclease II/ribonuclease R APS55_00720 IPR001900 Ribonuclease II/R APS55_00720 IPR013223 Ribonuclease B, N-terminal OB domain APS55_00720 IPR022966 Ribonuclease II/R, conserved site APS55_00725 IPR004692 Preprotein translocase SecG subunit APS55_00730 IPR001807 Chloride channel, voltage gated APS55_00730 IPR014743 Chloride channel, core APS55_00730 IPR023861 Chloride channel, ClcA APS55_00735 IPR020811 Enolase, N-terminal APS55_00735 IPR000941 Enolase APS55_00735 IPR036849 Enolase-like, C-terminal domain superfamily APS55_00735 IPR029017 Enolase-like, N-terminal APS55_00735 IPR020810 Enolase, C-terminal TIM barrel domain APS55_00735 IPR020809 Enolase, conserved site APS55_00740 IPR013785 Aldolase-type TIM barrel APS55_00740 IPR035990 Triosephosphate isomerase superfamily APS55_00740 IPR020861 Triosephosphate isomerase, active site APS55_00740 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic APS55_00740 IPR000652 Triosephosphate isomerase APS55_00745 IPR036043 Phosphoglycerate kinase superfamily APS55_00745 IPR015824 Phosphoglycerate kinase, N-terminal APS55_00745 IPR015911 Phosphoglycerate kinase, conserved site APS55_00745 IPR001576 Phosphoglycerate kinase APS55_00750 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain APS55_00750 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I APS55_00750 IPR036291 NAD(P)-binding domain superfamily APS55_00750 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family APS55_00750 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain APS55_00760 IPR029045 ClpP/crotonase-like domain superfamily APS55_00760 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA APS55_00760 IPR033135 ClpP, histidine active site APS55_00760 IPR018215 ClpP, Ser active site APS55_00760 IPR001907 ATP-dependent Clp protease proteolytic subunit APS55_00765 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain APS55_00765 IPR039518 WhiA, LAGLIDADG-like domain APS55_00765 IPR023054 Sporulation regulator WhiA, C-terminal APS55_00765 IPR003802 Sporulation regulator WhiA APS55_00765 IPR027434 Homing endonuclease APS55_00765 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_00770 IPR038136 Gluconeogenesis factor superfamily APS55_00770 IPR010119 Gluconeogenesis factor APS55_00770 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 APS55_00775 IPR003593 AAA+ ATPase domain APS55_00775 IPR003439 ABC transporter-like APS55_00775 IPR017871 ABC transporter, conserved site APS55_00775 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00775 IPR004602 UvrABC system subunit A APS55_00775 IPR041552 UvrA DNA-binding domain APS55_00775 IPR041102 UvrA, interaction domain APS55_00780 IPR001943 UVR domain APS55_00780 IPR004807 UvrABC system, subunit B APS55_00780 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00780 IPR001650 Helicase, C-terminal APS55_00780 IPR014001 Helicase superfamily 1/2, ATP-binding domain APS55_00780 IPR006935 Helicase/UvrB, N-terminal APS55_00780 IPR024759 UvrB, YAD/RRR-motif-containing domain APS55_00780 IPR041471 UvrB, interaction domain APS55_00780 IPR036876 UVR domain superfamily APS55_00785 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site APS55_00785 IPR005982 Thioredoxin reductase APS55_00785 IPR023753 FAD/NAD(P)-binding domain APS55_00785 IPR036188 FAD/NAD(P)-binding domain superfamily APS55_00790 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type APS55_00790 IPR005835 Nucleotidyl transferase domain APS55_00790 IPR029044 Nucleotide-diphospho-sugar transferases APS55_00795 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal APS55_00795 IPR036291 NAD(P)-binding domain superfamily APS55_00795 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent APS55_00795 IPR013328 6-phosphogluconate dehydrogenase, domain 2 APS55_00795 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily APS55_00795 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal APS55_00800 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt APS55_00805 IPR003755 HPr(Ser) kinase/phosphorylase APS55_00805 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily APS55_00805 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal APS55_00805 IPR011104 HPr kinase/phosphorylase, C-terminal APS55_00810 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV APS55_00815 IPR007168 Phage shock protein, PspC, N-terminal APS55_00820 IPR001478 PDZ domain APS55_00820 IPR041489 PDZ domain 6 APS55_00820 IPR036034 PDZ superfamily APS55_00825 IPR005139 Peptide chain release factor APS55_00825 IPR004374 Peptide chain release factor 2 APS55_00825 IPR000352 Peptide chain release factor class I APS55_00830 IPR036266 SecA, Wing/Scaffold superfamily APS55_00830 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00830 IPR000185 Protein translocase subunit SecA APS55_00830 IPR036670 SecA, preprotein cross-linking domain superfamily APS55_00830 IPR011115 SecA DEAD-like, N-terminal APS55_00830 IPR014018 SecA motor DEAD APS55_00830 IPR011130 SecA, preprotein cross-linking domain APS55_00830 IPR011116 SecA Wing/Scaffold APS55_00830 IPR020937 SecA conserved site APS55_00840 IPR001650 Helicase, C-terminal APS55_00840 IPR014001 Helicase superfamily 1/2, ATP-binding domain APS55_00840 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00840 IPR006935 Helicase/UvrB, N-terminal APS55_00845 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site APS55_00845 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal APS55_00845 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_00845 IPR036956 Impact, N-terminal domain superfamily APS55_00845 IPR015796 Impact family, bacterial/archaeal APS55_00845 IPR023582 Impact family APS55_00845 IPR035647 EF-G domain III/V-like APS55_00845 IPR001498 Impact, N-terminal APS55_00850 IPR000715 Glycosyl transferase, family 4 APS55_00850 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site APS55_00855 IPR027410 TCP-1-like chaperonin intermediate domain superfamily APS55_00855 IPR027413 GroEL-like equatorial domain superfamily APS55_00855 IPR027409 GroEL-like apical domain superfamily APS55_00855 IPR002423 Chaperonin Cpn60/TCP-1 family APS55_00855 IPR001844 Chaperonin Cpn60 APS55_00855 IPR018370 Chaperonin Cpn60, conserved site APS55_00860 IPR018369 Chaperonin GroES, conserved site APS55_00860 IPR037124 GroES chaperonin superfamily APS55_00860 IPR020818 GroES chaperonin family APS55_00860 IPR011032 GroES-like superfamily APS55_00865 IPR036390 Winged helix DNA-binding domain superfamily APS55_00865 IPR009718 Rex DNA-binding, C-terminal domain APS55_00865 IPR036291 NAD(P)-binding domain superfamily APS55_00865 IPR022876 Redox-sensing transcriptional repressor Rex APS55_00865 IPR003781 CoA-binding APS55_00865 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_00870 IPR003593 AAA+ ATPase domain APS55_00870 IPR032524 ABC transporter Uup, C-terminal APS55_00870 IPR032781 ABC-transporter extension domain APS55_00870 IPR003439 ABC transporter-like APS55_00870 IPR017871 ABC transporter, conserved site APS55_00870 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00870 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily APS55_00875 IPR017861 Kae1/TsaD family APS55_00875 IPR017860 Peptidase M22, conserved site APS55_00875 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD APS55_00875 IPR000905 Gcp-like domain APS55_00885 IPR000905 Gcp-like domain APS55_00885 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB APS55_00895 IPR000878 Tetrapyrrole methylase APS55_00895 IPR035996 Tetrapyrrole methylase superfamily APS55_00895 IPR018063 SAM-dependent methyltransferase RsmI, conserved site APS55_00895 IPR014777 Tetrapyrrole methylase, subdomain 1 APS55_00895 IPR014776 Tetrapyrrole methylase, subdomain 2 APS55_00895 IPR008189 rRNA small subunit methyltransferase I APS55_00900 IPR010377 Initiation control protein YabA APS55_00905 IPR004622 DNA polymerase III, delta prime subunit APS55_00905 IPR015199 DNA polymerase III, delta subunit, C-terminal APS55_00905 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00910 IPR010375 Cyclic-di-AMP receptor APS55_00910 IPR011322 Nitrogen regulatory PII-like, alpha/beta APS55_00910 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal APS55_00915 IPR018094 Thymidylate kinase APS55_00915 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00915 IPR039430 Thymidylate kinase-like domain APS55_00915 IPR018095 Thymidylate kinase, conserved site APS55_00925 IPR023628 Recombination protein RecR, C4-type zinc finger APS55_00925 IPR034137 RecR, TOPRIM domain APS55_00925 IPR023627 Recombination protein RecR APS55_00925 IPR000093 DNA recombination protein RecR APS55_00925 IPR006171 TOPRIM domain APS55_00925 IPR015967 Recombination protein RecR, conserved site APS55_00930 IPR004401 Nucleoid-associated protein YbaB/EbfC family APS55_00930 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily APS55_00935 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_00935 IPR022754 DNA polymerase III, gamma subunit, domain III APS55_00935 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal APS55_00935 IPR001270 ClpA/B family APS55_00935 IPR003593 AAA+ ATPase domain APS55_00935 IPR012763 DNA polymerase III, subunit gamma/ tau APS55_00940 IPR028883 tRNA-specific adenosine deaminase APS55_00940 IPR002125 Cytidine and deoxycytidylate deaminase domain APS55_00940 IPR016193 Cytidine deaminase-like APS55_00940 IPR016192 APOBEC/CMP deaminase, zinc-binding APS55_00945 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_00945 IPR007848 Methyltransferase small domain APS55_00950 IPR002109 Glutaredoxin APS55_00950 IPR036249 Thioredoxin-like superfamily APS55_00950 IPR011909 Glutaredoxin-like protein NrdH APS55_00955 IPR013346 Ribonucleotide reductase, class I , alpha subunit APS55_00955 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE APS55_00955 IPR000788 Ribonucleotide reductase large subunit, C-terminal APS55_00955 IPR013509 Ribonucleotide reductase large subunit, N-terminal APS55_00955 IPR013554 Ribonucleotide reductase N-terminal APS55_00955 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal APS55_00955 IPR039718 Ribonucleoside-diphosphate reductase large subunit APS55_00960 IPR012348 Ribonucleotide reductase-like APS55_00960 IPR009078 Ferritin-like superfamily APS55_00960 IPR030475 Ribonucleotide reductase small subunit, acitve site APS55_00960 IPR000358 Ribonucleotide reductase small subunit family APS55_00960 IPR033909 Ribonucleotide reductase small subunit APS55_00960 IPR026494 Ribonucleoside reductase subunit beta, NrdF APS55_00965 IPR016181 Acyl-CoA N-acyltransferase APS55_00965 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD APS55_00965 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal APS55_00970 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily APS55_00970 IPR008932 Ribosomal protein L7/L12, oligomerisation APS55_00970 IPR013823 Ribosomal protein L7/L12, C-terminal APS55_00970 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APS55_00970 IPR000206 Ribosomal protein L7/L12 APS55_00975 IPR022973 Ribosomal protein L10 APS55_00975 IPR002363 Ribosomal protein L10, eubacterial, conserved site APS55_00975 IPR001790 Ribosomal protein L10P APS55_00980 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein APS55_00980 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich APS55_00980 IPR002143 Ribosomal protein L1 APS55_00980 IPR023673 Ribosomal protein L1, conserved site APS55_00980 IPR023674 Ribosomal protein L1-like APS55_00980 IPR005878 Ribosomal protein L1, bacterial-type APS55_00985 IPR020784 Ribosomal protein L11, N-terminal APS55_00985 IPR020785 Ribosomal protein L11, conserved site APS55_00985 IPR036769 Ribosomal protein L11, C-terminal domain superfamily APS55_00985 IPR020783 Ribosomal protein L11, C-terminal APS55_00985 IPR006519 Ribosomal protein L11, bacterial-type APS55_00985 IPR000911 Ribosomal protein L11/L12 APS55_00985 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily APS55_00990 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site APS55_00990 IPR008991 Translation protein SH3-like domain superfamily APS55_00990 IPR014722 Ribosomal protein L2, domain 2 APS55_00990 IPR036735 NusG, N-terminal domain superfamily APS55_00990 IPR006645 NusG, N-terminal APS55_00990 IPR001062 Transcription antitermination protein, NusG APS55_00990 IPR005824 KOW APS55_00995 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit APS55_00995 IPR038379 SecE superfamily APS55_00995 IPR005807 SecE subunit of protein translocation complex, bacterial-like APS55_01000 IPR001705 Ribosomal protein L33 APS55_01000 IPR038584 Ribosomal protein L33 superfamily APS55_01000 IPR011332 Zinc-binding ribosomal protein APS55_01010 IPR010298 Protein of unknown function DUF901 APS55_01015 IPR029028 Alpha/beta knot methyltransferases APS55_01015 IPR004441 RNA methyltransferase TrmH family APS55_01015 IPR001537 tRNA/rRNA methyltransferase, SpoU type APS55_01015 IPR013123 RNA 2-O ribose methyltransferase, substrate binding APS55_01015 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APS55_01015 IPR029064 50S ribosomal protein L30e-like APS55_01020 IPR036389 Ribonuclease III, endonuclease domain superfamily APS55_01020 IPR000999 Ribonuclease III domain APS55_01020 IPR008226 Mini-ribonuclease 3 family APS55_01025 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding APS55_01025 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR APS55_01025 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase APS55_01025 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_01025 IPR015803 Cysteine-tRNA ligase APS55_01025 IPR032678 tRNA synthetases class I, catalytic domain APS55_01030 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial APS55_01030 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding APS55_01030 IPR000924 Glutamyl/glutaminyl-tRNA synthetase APS55_01030 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain APS55_01030 IPR033910 Glutamyl-tRNA synthetase APS55_01030 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_01030 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 APS55_01030 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site APS55_01035 IPR002792 TRAM domain APS55_01035 IPR002716 PIN domain APS55_01035 IPR029060 PIN-like domain superfamily APS55_01040 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_01040 IPR003593 AAA+ ATPase domain APS55_01040 IPR004504 DNA repair protein RadA APS55_01040 IPR041166 LapB, rubredoxin metal binding domain APS55_01040 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_01040 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_01040 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain APS55_01045 IPR029054 dUTPase-like APS55_01045 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase APS55_01045 IPR036157 dUTPase-like superfamily APS55_01045 IPR033704 dUTPase, trimeric APS55_01050 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup APS55_01050 IPR004788 Ribose 5-phosphate isomerase, type A APS55_01050 IPR037171 NagB/RpiA transferase-like APS55_01055 IPR004134 Peptidase C1B, bleomycin hydrolase APS55_01055 IPR025660 Cysteine peptidase, histidine active site APS55_01055 IPR038765 Papain-like cysteine peptidase superfamily APS55_01055 IPR000169 Cysteine peptidase, cysteine active site APS55_01060 IPR029033 Histidine phosphatase superfamily APS55_01060 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site APS55_01060 IPR005952 Phosphoglycerate mutase 1 APS55_01060 IPR013078 Histidine phosphatase superfamily, clade-1 APS55_01065 IPR000620 EamA domain APS55_01070 IPR023734 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU APS55_01070 IPR004474 Cell envelope-related transcriptional attenuator domain APS55_01090 IPR006204 GHMP kinase N-terminal domain APS55_01090 IPR006203 GHMP kinase, ATP-binding, conserved site APS55_01090 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_01090 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_01090 IPR013750 GHMP kinase, C-terminal domain APS55_01090 IPR000870 Homoserine kinase APS55_01090 IPR036554 GHMP kinase, C-terminal domain superfamily APS55_01095 IPR006640 SprT-like APS55_01095 IPR023524 Uncharacterised protein family SprT-like APS55_01100 IPR023319 Tex-like protein, HTH domain superfamily APS55_01100 IPR003029 S1 domain APS55_01100 IPR022967 RNA-binding domain, S1 APS55_01100 IPR018974 Tex-like protein, N-terminal APS55_01100 IPR032639 Tex protein, YqgF-like domain APS55_01100 IPR006641 YqgF/RNase H-like domain APS55_01100 IPR037027 YqgF/RNase H-like domain superfamily APS55_01100 IPR010994 RuvA domain 2-like APS55_01100 IPR012337 Ribonuclease H-like superfamily APS55_01100 IPR012340 Nucleic acid-binding, OB-fold APS55_01100 IPR041692 HHH domain 9 APS55_01100 IPR023323 Tex-like domain superfamily APS55_01110 IPR022926 NH(3)-dependent NAD(+) synthetase APS55_01110 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_01110 IPR003694 NAD(+) synthetase APS55_01110 IPR022310 NAD/GMP synthase APS55_01115 IPR013785 Aldolase-type TIM barrel APS55_01115 IPR041619 Nicotinate phosphoribosyltransferase C-terminal domain APS55_01115 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain APS55_01115 IPR007229 Nicotinate phosphoribosyltransferase family APS55_01115 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal APS55_01115 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase APS55_01115 IPR006405 Nicotinate phosphoribosyltransferase pncB-type APS55_01120 IPR034714 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase APS55_01120 IPR004629 Glycosyl transferase WecB/TagA/CpsF APS55_01125 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_01125 IPR000524 Transcription regulator HTH, GntR APS55_01125 IPR011663 UbiC transcription regulator-associated APS55_01125 IPR036390 Winged helix DNA-binding domain superfamily APS55_01125 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APS55_01130 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal APS55_01130 IPR000304 Pyrroline-5-carboxylate reductase APS55_01130 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain APS55_01130 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily APS55_01130 IPR036291 NAD(P)-binding domain superfamily APS55_01145 IPR036259 MFS transporter superfamily APS55_01145 IPR005279 Dipeptide/tripeptide permease APS55_01145 IPR000109 Proton-dependent oligopeptide transporter family APS55_01145 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site APS55_01145 IPR020846 Major facilitator superfamily domain APS55_01185 IPR006195 Aminoacyl-tRNA synthetase, class II APS55_01185 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal APS55_01185 IPR002313 Lysine-tRNA ligase, class II APS55_01185 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type APS55_01185 IPR012340 Nucleic acid-binding, OB-fold APS55_01185 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) APS55_01190 IPR001269 tRNA-dihydrouridine synthase APS55_01190 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal APS55_01190 IPR013785 Aldolase-type TIM barrel APS55_01190 IPR035587 DUS-like, FMN-binding domain APS55_01190 IPR018517 tRNA-dihydrouridine synthase, conserved site APS55_01190 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 APS55_01195 IPR016154 Heat shock protein Hsp33, C-terminal APS55_01195 IPR000397 Heat shock protein Hsp33 APS55_01195 IPR016153 Heat shock protein Hsp33, N-terminal APS55_01200 IPR003593 AAA+ ATPase domain APS55_01200 IPR041569 AAA ATPase, AAA+ lid domain APS55_01200 IPR003959 ATPase, AAA-type, core APS55_01200 IPR003960 ATPase, AAA-type, conserved site APS55_01200 IPR005936 Peptidase, FtsH APS55_01200 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_01200 IPR011546 Peptidase M41, FtsH extracellular APS55_01200 IPR000642 Peptidase M41 APS55_01200 IPR037219 Peptidase M41-like APS55_01205 IPR000836 Phosphoribosyltransferase domain APS55_01205 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal APS55_01205 IPR005904 Hypoxanthine phosphoribosyl transferase APS55_01205 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_01205 IPR029057 Phosphoribosyltransferase-like APS55_01205 IPR012094 tRNA(Ile)-lysidine synthase APS55_01205 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal APS55_01205 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal APS55_01210 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal APS55_01210 IPR012094 tRNA(Ile)-lysidine synthase APS55_01210 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal APS55_01210 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal APS55_01210 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_01215 IPR022967 RNA-binding domain, S1 APS55_01215 IPR012340 Nucleic acid-binding, OB-fold APS55_01215 IPR003029 S1 domain APS55_01225 IPR002942 RNA-binding S4 domain APS55_01225 IPR025490 RNA-binding protein, HP1423 type APS55_01225 IPR036986 RNA-binding S4 domain superfamily APS55_01230 IPR002797 Polysaccharide biosynthesis protein APS55_01230 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain APS55_01230 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type APS55_01235 IPR037235 TRCF-like, C-terminal domain APS55_01235 IPR041471 UvrB, interaction domain APS55_01235 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_01235 IPR004576 Transcription-repair coupling factor APS55_01235 IPR003711 CarD-like/TRCF domain APS55_01235 IPR014001 Helicase superfamily 1/2, ATP-binding domain APS55_01235 IPR011545 DEAD/DEAH box helicase domain APS55_01235 IPR036101 CarD-like/TRCF domain superfamily APS55_01235 IPR001650 Helicase, C-terminal APS55_01235 IPR005118 Transcription-repair-coupling factor, C-terminal domain APS55_01240 IPR001328 Peptidyl-tRNA hydrolase APS55_01240 IPR018171 Peptidyl-tRNA hydrolase, conserved site APS55_01240 IPR036416 Peptidyl-tRNA hydrolase superfamily APS55_01245 IPR011304 L-lactate dehydrogenase APS55_01245 IPR036291 NAD(P)-binding domain superfamily APS55_01245 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal APS55_01245 IPR001236 Lactate/malate dehydrogenase, N-terminal APS55_01245 IPR022383 Lactate/malate dehydrogenase, C-terminal APS55_01245 IPR018177 L-lactate dehydrogenase, active site APS55_01245 IPR001557 L-lactate/malate dehydrogenase APS55_01255 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor APS55_01255 IPR003477 mRNA interferase PemK-like APS55_01265 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site APS55_01265 IPR001608 Alanine racemase, N-terminal APS55_01265 IPR011079 Alanine racemase, C-terminal APS55_01265 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal APS55_01265 IPR000821 Alanine racemase APS55_01265 IPR029066 PLP-binding barrel APS55_01270 IPR014014 RNA helicase, DEAD-box type, Q motif APS55_01270 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site APS55_01270 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_01270 IPR001650 Helicase, C-terminal APS55_01270 IPR014001 Helicase superfamily 1/2, ATP-binding domain APS55_01270 IPR011545 DEAD/DEAH box helicase domain APS55_01270 IPR030880 DEAD-box ATP-dependent RNA helicase CshA APS55_01275 IPR013221 Mur ligase, central APS55_01275 IPR036615 Mur ligase, C-terminal domain superfamily APS55_01275 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase APS55_01275 IPR004101 Mur ligase, C-terminal APS55_01275 IPR036565 Mur-like, catalytic domain superfamily APS55_01275 IPR000713 Mur ligase, N-terminal catalytic domain APS55_01275 IPR035911 MurE/MurF, N-terminal APS55_01285 IPR042105 Ribosomal protein L31 superfamily APS55_01285 IPR027493 Ribosomal protein L31 type B APS55_01285 IPR002150 Ribosomal protein L31 APS55_01285 IPR034704 L28p-like APS55_01290 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase APS55_01290 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta APS55_01290 IPR036968 Enolpyruvate transferase domain superfamily APS55_01290 IPR001986 Enolpyruvate transferase domain APS55_01295 IPR029062 Class I glutamine amidotransferase-like APS55_01295 IPR004468 CTP synthase APS55_01295 IPR017456 CTP synthase, N-terminal APS55_01295 IPR017926 Glutamine amidotransferase APS55_01295 IPR033828 CTP synthase GATase domain APS55_01295 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_01300 IPR038087 DNA-directed RNA polymerase subunit delta domain superfamily APS55_01300 IPR029757 DNA-directed RNA polymerase subunit delta APS55_01300 IPR007759 HB1/Asxl, restriction endonuclease HTH domain APS55_01310 IPR006674 HD domain APS55_01310 IPR003607 HD/PDEase domain APS55_01315 IPR000150 Cof family APS55_01315 IPR036412 HAD-like superfamily APS55_01315 IPR006379 HAD-superfamily hydrolase, subfamily IIB APS55_01315 IPR023214 HAD superfamily APS55_01325 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type APS55_01325 IPR005946 Ribose-phosphate pyrophosphokinase APS55_01325 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site APS55_01325 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain APS55_01325 IPR000836 Phosphoribosyltransferase domain APS55_01325 IPR029057 Phosphoribosyltransferase-like APS55_01330 IPR001451 Hexapeptide repeat APS55_01330 IPR038009 GlmU, C-terminal LbH domain APS55_01330 IPR029044 Nucleotide-diphospho-sugar transferases APS55_01330 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase APS55_01330 IPR005835 Nucleotidyl transferase domain APS55_01330 IPR011004 Trimeric LpxA-like superfamily APS55_01335 IPR010078 Pur operon repressor APS55_01335 IPR015265 Bacterial purine repressor, N-terminal APS55_01335 IPR029057 Phosphoribosyltransferase-like APS55_01335 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_01335 IPR000836 Phosphoribosyltransferase domain APS55_01335 IPR036390 Winged helix DNA-binding domain superfamily APS55_01340 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_01340 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase APS55_01340 IPR006204 GHMP kinase N-terminal domain APS55_01340 IPR036554 GHMP kinase, C-terminal domain superfamily APS55_01340 IPR013750 GHMP kinase, C-terminal domain APS55_01340 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_01345 IPR009366 Protein Veg APS55_01350 IPR023165 rRNA adenine dimethylase-like APS55_01350 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site APS55_01350 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal APS55_01350 IPR011530 Ribosomal RNA adenine dimethylase APS55_01350 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_01350 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm APS55_01355 IPR025156 Ribonuclease M5, C-terminal domain APS55_01355 IPR004466 Ribonuclease M5 APS55_01355 IPR034141 Ribonuclease M5-like, TOPRIM domain APS55_01355 IPR006171 TOPRIM domain APS55_01360 IPR032466 Metal-dependent hydrolase APS55_01360 IPR001130 TatD family APS55_01360 IPR018228 Deoxyribonuclease, TatD-related, conserved site APS55_01360 IPR015991 Uncharacterised hydrolase TatD-type APS55_01365 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal APS55_01365 IPR023457 Methionine-tRNA synthetase, type 2 APS55_01365 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site APS55_01365 IPR014758 Methionyl-tRNA synthetase APS55_01365 IPR033911 Methioninyl-tRNA synthetase core domain APS55_01365 IPR012340 Nucleic acid-binding, OB-fold APS55_01365 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_01365 IPR002547 tRNA-binding domain APS55_01365 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding APS55_01365 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain APS55_01365 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding APS55_01365 IPR015413 Methionyl/Leucyl tRNA synthetase APS55_01370 IPR036520 UPF0759 superfamily APS55_01370 IPR002763 Protein of unknown function DUF72 APS55_01375 IPR026591 Sirtuin, catalytic core small domain superfamily APS55_01375 IPR028628 Sirtuin, class U APS55_01375 IPR026590 Sirtuin family, catalytic core domain APS55_01375 IPR003000 Sirtuin family APS55_01375 IPR029035 DHS-like NAD/FAD-binding domain superfamily APS55_01385 IPR009029 Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamily APS55_01385 IPR004553 Hydroxymethylglutaryl-CoA reductase, bacterial-type APS55_01385 IPR023074 Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamily APS55_01385 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site APS55_01385 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily APS55_01385 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II APS55_01390 IPR030673 Pyrophosphatase, GppA/Ppx-type APS55_01390 IPR003695 Ppx/GppA phosphatase APS55_01390 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase APS55_01395 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_01395 IPR002306 Tryptophan-tRNA ligase APS55_01395 IPR024109 Tryptophan-tRNA ligase, bacterial-type APS55_01395 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site APS55_01395 IPR002305 Aminoacyl-tRNA synthetase, class Ic APS55_01400 IPR000212 DNA helicase, UvrD/REP type APS55_01400 IPR014016 UvrD-like helicase, ATP-binding domain APS55_01400 IPR027785 UvrD-like helicase C-terminal domain APS55_01400 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_01405 IPR025200 Polyphosphate kinase C-terminal domain 2 APS55_01405 IPR036832 Polyphosphate kinase N-terminal domain superfamily APS55_01405 IPR025198 Polyphosphate kinase N-terminal domain APS55_01405 IPR003414 Polyphosphate kinase APS55_01405 IPR036830 Polyphosphate kinase middle domain superfamily APS55_01405 IPR024953 Polyphosphate kinase middle domain APS55_01405 IPR041108 Polyphosphate kinase, C-terminal domain 1 APS55_01435 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 APS55_01435 IPR024088 Tyrosine-tRNA ligase, bacterial-type APS55_01435 IPR002307 Tyrosine-tRNA ligase APS55_01435 IPR036986 RNA-binding S4 domain superfamily APS55_01435 IPR002942 RNA-binding S4 domain APS55_01435 IPR002305 Aminoacyl-tRNA synthetase, class Ic APS55_01435 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_01435 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site APS55_01445 IPR036259 MFS transporter superfamily APS55_01445 IPR011701 Major facilitator superfamily APS55_01445 IPR004638 Drug resistance transporter EmrB-like APS55_01445 IPR020846 Major facilitator superfamily domain APS55_01455 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA APS55_01455 IPR029044 Nucleotide-diphospho-sugar transferases APS55_01455 IPR001173 Glycosyltransferase 2-like APS55_01470 IPR029033 Histidine phosphatase superfamily APS55_01470 IPR013078 Histidine phosphatase superfamily, clade-1 APS55_01470 IPR005952 Phosphoglycerate mutase 1 APS55_01470 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site APS55_01475 IPR002549 Transmembrane protein TqsA-like APS55_01480 IPR003333 Mycolic acid cyclopropane synthase APS55_01480 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_01505 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A APS55_01505 IPR012338 Beta-lactamase/transpeptidase-like APS55_01505 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal APS55_01505 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily APS55_01505 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal APS55_01505 IPR015956 Penicillin-binding protein, C-terminal domain superfamily APS55_01510 IPR003594 Histidine kinase/HSP90-like ATPase APS55_01510 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APS55_01510 IPR005467 Histidine kinase domain APS55_01510 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain APS55_01510 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily APS55_01510 IPR000014 PAS domain APS55_01510 IPR035965 PAS domain superfamily APS55_01510 IPR013767 PAS fold APS55_01510 IPR031967 PhoR, single Cache-like domain APS55_01510 IPR004358 Signal transduction histidine kinase-related protein, C-terminal APS55_01515 IPR039420 Transcriptional regulatory protein WalR-like APS55_01515 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_01515 IPR016032 Signal transduction response regulator, C-terminal effector APS55_01515 IPR001867 OmpR/PhoB-type DNA-binding domain APS55_01515 IPR011006 CheY-like superfamily APS55_01515 IPR001789 Signal transduction response regulator, receiver domain APS55_01520 IPR013785 Aldolase-type TIM barrel APS55_01520 IPR005990 Inosine-5'-monophosphate dehydrogenase APS55_01520 IPR015875 IMP dehydrogenase / GMP reductase, conserved site APS55_01520 IPR001093 IMP dehydrogenase/GMP reductase APS55_01520 IPR000644 CBS domain APS55_01530 IPR006073 GTP binding domain APS55_01530 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_01530 IPR041706 YchF, N-terminal APS55_01530 IPR031167 OBG-type guanine nucleotide-binding (G) domain APS55_01530 IPR012675 Beta-grasp domain superfamily APS55_01530 IPR004095 TGS APS55_01530 IPR013029 YchF, C-terminal domain APS55_01530 IPR023192 TGS-like domain superfamily APS55_01530 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 APS55_01530 IPR012676 TGS-like APS55_01535 IPR009296 Protein of unknown function DUF951 APS55_01540 IPR041468 ParB/Spo0J, HTH domain APS55_01540 IPR004437 ParB/RepB/Spo0J partition protein APS55_01540 IPR036086 ParB/Sulfiredoxin superfamily APS55_01540 IPR003115 ParB/Sulfiredoxin APS55_01545 IPR025669 AAA domain APS55_01545 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_01550 IPR003682 rRNA small subunit methyltransferase G APS55_01550 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_01555 IPR006043 Xanthine/uracil/vitamin C permease APS55_01560 IPR011657 Concentrative nucleoside transporter C-terminal domain APS55_01560 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial APS55_01560 IPR008276 Concentrative nucleoside transporter APS55_01560 IPR002668 Concentrative nucleoside transporter N-terminal domain APS55_01565 IPR006124 Metalloenzyme APS55_01565 IPR017850 Alkaline-phosphatase-like, core domain superfamily APS55_01565 IPR010045 Phosphopentomutase APS55_01565 IPR024052 Phosphopentomutase DeoB cap domain superfamily APS55_01595 IPR025948 HTH-like domain APS55_01595 IPR036397 Ribonuclease H superfamily APS55_01595 IPR001584 Integrase, catalytic core APS55_01595 IPR012337 Ribonuclease H-like superfamily APS55_01595 IPR038965 Transposase InsF-like APS55_01620 IPR000847 Transcription regulator HTH, LysR APS55_01620 IPR036390 Winged helix DNA-binding domain superfamily APS55_01620 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_01620 IPR005119 LysR, substrate-binding APS55_01640 IPR016181 Acyl-CoA N-acyltransferase APS55_01640 IPR000182 GNAT domain APS55_01655 IPR002792 TRAM domain APS55_01655 IPR030390 RNA methyltransferase TrmA, active site APS55_01655 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_01655 IPR012340 Nucleic acid-binding, OB-fold APS55_01655 IPR010280 (Uracil-5)-methyltransferase family APS55_01670 IPR001296 Glycosyl transferase, family 1 APS55_01670 IPR014267 Glycosyltransferase Gtf1 APS55_01675 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain APS55_01675 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA APS55_01675 IPR001296 Glycosyl transferase, family 1 APS55_01705 IPR016130 Protein-tyrosine phosphatase, active site APS55_01705 IPR026893 Tyrosine/serine-protein phosphatase IphP-type APS55_01705 IPR029021 Protein-tyrosine phosphatase-like APS55_01705 IPR000387 Tyrosine specific protein phosphatases domain APS55_01720 IPR038965 Transposase InsF-like APS55_01720 IPR001584 Integrase, catalytic core APS55_01720 IPR036397 Ribonuclease H superfamily APS55_01720 IPR012337 Ribonuclease H-like superfamily APS55_01735 IPR019468 Adenylosuccinate lyase C-terminal APS55_01735 IPR000362 Fumarate lyase family APS55_01735 IPR020557 Fumarate lyase, conserved site APS55_01735 IPR024083 Fumarase/histidase, N-terminal APS55_01735 IPR008948 L-Aspartase-like APS55_01735 IPR022761 Fumarate lyase, N-terminal APS55_01735 IPR004769 Adenylosuccinate lyase APS55_01740 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_01740 IPR042111 Adenylosuccinate synthetase, domain 3 APS55_01740 IPR042110 Adenylosuccinate synthetase, domain 2 APS55_01740 IPR042109 Adenylosuccinate synthetase, domain 1 APS55_01740 IPR018220 Adenylosuccinate synthase, GTP-binding site APS55_01740 IPR033128 Adenylosuccinate synthase, active site APS55_01740 IPR001114 Adenylosuccinate synthetase APS55_01745 IPR015875 IMP dehydrogenase / GMP reductase, conserved site APS55_01745 IPR005994 Guanosine monophosphate reductase, type2 APS55_01745 IPR001093 IMP dehydrogenase/GMP reductase APS55_01745 IPR013785 Aldolase-type TIM barrel APS55_01750 IPR005754 Sortase family APS55_01750 IPR042007 Sortase A APS55_01750 IPR023365 Sortase domain superfamily APS55_01755 IPR024920 Dihydroorotate dehydrogenase, class 1 APS55_01755 IPR001295 Dihydroorotate dehydrogenase, conserved site APS55_01755 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 APS55_01755 IPR005720 Dihydroorotate dehydrogenase domain APS55_01755 IPR023359 Dihydroorotate dehydrogenase A, chain A, domain 2 APS55_01755 IPR033886 Dihydroorotate dehydrogenase, class 1A APS55_01755 IPR013785 Aldolase-type TIM barrel APS55_01760 IPR036914 Methylglyoxal synthase-like domain superfamily APS55_01760 IPR011607 Methylglyoxal synthase-like domain APS55_01760 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain APS55_01760 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain APS55_01760 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily APS55_01760 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain APS55_01760 IPR011761 ATP-grasp fold APS55_01760 IPR016185 Pre-ATP-grasp domain superfamily APS55_01760 IPR006275 Carbamoyl-phosphate synthase, large subunit APS55_01760 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain APS55_01765 IPR017926 Glutamine amidotransferase APS55_01765 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain APS55_01765 IPR006274 Carbamoyl-phosphate synthase, small subunit APS55_01765 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain APS55_01765 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily APS55_01765 IPR029062 Class I glutamine amidotransferase-like APS55_01770 IPR032466 Metal-dependent hydrolase APS55_01770 IPR011059 Metal-dependent hydrolase, composite domain superfamily APS55_01770 IPR002195 Dihydroorotase, conserved site APS55_01770 IPR006680 Amidohydrolase-related APS55_01770 IPR004722 Dihydroorotase APS55_01775 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain APS55_01775 IPR002082 Aspartate carbamoyltransferase APS55_01775 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily APS55_01775 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding APS55_01775 IPR006130 Aspartate/ornithine carbamoyltransferase APS55_01780 IPR010611 3D domain APS55_01780 IPR036779 LysM domain superfamily APS55_01780 IPR036908 RlpA-like domain superfamily APS55_01780 IPR018392 LysM domain APS55_01790 IPR004770 Na+/H+ antiporter NhaC APS55_01790 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal APS55_01795 IPR036249 Thioredoxin-like superfamily APS55_01795 IPR013766 Thioredoxin domain APS55_01795 IPR017937 Thioredoxin, conserved site APS55_01795 IPR005746 Thioredoxin APS55_01800 IPR022493 Integral membrane YkoY APS55_01800 IPR005496 Integral membrane protein TerC APS55_01805 IPR038200 GW domain superfamily APS55_01805 IPR025987 GW domain APS55_01805 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain APS55_01815 IPR038765 Papain-like cysteine peptidase superfamily APS55_01815 IPR000064 Endopeptidase, NLPC/P60 domain APS55_01815 IPR018392 LysM domain APS55_01815 IPR036779 LysM domain superfamily APS55_01815 IPR003646 SH3-like domain, bacterial-type APS55_01820 IPR023086 Phosphoglycerate mutase, GpmB, probable APS55_01820 IPR029033 Histidine phosphatase superfamily APS55_01820 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site APS55_01820 IPR013078 Histidine phosphatase superfamily, clade-1 APS55_01830 IPR017850 Alkaline-phosphatase-like, core domain superfamily APS55_01830 IPR000917 Sulfatase, N-terminal APS55_01830 IPR012160 Lipoteichoic acid synthase-like APS55_01840 IPR036188 FAD/NAD(P)-binding domain superfamily APS55_01840 IPR023753 FAD/NAD(P)-binding domain APS55_01840 IPR022890 Ferredoxin--NADP reductase, type 2 APS55_01850 IPR022977 Pyrimidine-specific ribonucleoside hydrolase RihB APS55_01850 IPR036452 Ribonucleoside hydrolase-like APS55_01850 IPR023186 Inosine/uridine-preferring nucleoside hydrolase APS55_01850 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain APS55_01855 IPR006379 HAD-superfamily hydrolase, subfamily IIB APS55_01855 IPR036412 HAD-like superfamily APS55_01855 IPR000150 Cof family APS55_01860 IPR036249 Thioredoxin-like superfamily APS55_01860 IPR006504 Transcriptional regulator Spx/MgsR APS55_01860 IPR006660 Arsenate reductase-like APS55_01860 IPR023731 Regulatory protein Spx APS55_01865 IPR041827 CpdB, N-terminal metallophosphatase domain APS55_01865 IPR029052 Metallo-dependent phosphatase-like APS55_01865 IPR008334 5'-Nucleotidase, C-terminal APS55_01865 IPR036907 5'-Nucleotidase, C-terminal domain superfamily APS55_01865 IPR006146 5'-Nucleotidase, conserved site APS55_01865 IPR006179 5'-Nucleotidase/apyrase APS55_01865 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type APS55_01865 IPR019931 LPXTG cell wall anchor domain APS55_01870 IPR036612 K Homology domain, type 1 superfamily APS55_01870 IPR006675 HDIG domain APS55_01870 IPR017705 Ribonuclease Y APS55_01870 IPR004088 K Homology domain, type 1 APS55_01870 IPR004087 K Homology domain APS55_01870 IPR022711 Ribonuclease Y, N-terminal APS55_01870 IPR003607 HD/PDEase domain APS55_01870 IPR006674 HD domain APS55_01885 IPR018047 Ammonium transporter, conserved site APS55_01885 IPR001905 Ammonium transporter APS55_01885 IPR029020 Ammonium/urea transporter APS55_01885 IPR024041 Ammonium transporter AmtB-like domain APS55_01905 IPR020103 Pseudouridine synthase, catalytic domain superfamily APS55_01905 IPR006225 Pseudouridine synthase, RluC/RluD APS55_01905 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site APS55_01905 IPR036986 RNA-binding S4 domain superfamily APS55_01905 IPR002942 RNA-binding S4 domain APS55_01905 IPR006145 Pseudouridine synthase, RsuA/RluA APS55_01910 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II APS55_01910 IPR029061 Thiamin diphosphate-binding fold APS55_01910 IPR023962 Probable phosphoketolase APS55_01910 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site APS55_01910 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase APS55_01910 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal APS55_01910 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site APS55_01910 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal APS55_01915 IPR000524 Transcription regulator HTH, GntR APS55_01915 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_01915 IPR036390 Winged helix DNA-binding domain superfamily APS55_01915 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APS55_01915 IPR011663 UbiC transcription regulator-associated APS55_01930 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain APS55_01930 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily APS55_01930 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC APS55_01935 IPR006674 HD domain APS55_01935 IPR003607 HD/PDEase domain APS55_01945 IPR023214 HAD superfamily APS55_01945 IPR018303 P-type ATPase, phosphorylation site APS55_01945 IPR023298 P-type ATPase, transmembrane domain superfamily APS55_01945 IPR008250 P-type ATPase, A domain superfamily APS55_01945 IPR036412 HAD-like superfamily APS55_01945 IPR001757 P-type ATPase APS55_01945 IPR023299 P-type ATPase, cytoplasmic domain N APS55_01950 IPR036812 NADP-dependent oxidoreductase domain superfamily APS55_01950 IPR023210 NADP-dependent oxidoreductase domain APS55_01950 IPR020471 Aldo/keto reductase APS55_01950 IPR018170 Aldo/keto reductase, conserved site APS55_01960 IPR015424 Pyridoxal phosphate-dependent transferase APS55_01960 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_01960 IPR039429 Serine hydroxymethyltransferase-like domain APS55_01960 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site APS55_01960 IPR001085 Serine hydroxymethyltransferase APS55_01960 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_01975 IPR003784 BioY protein APS55_01985 IPR003779 Carboxymuconolactone decarboxylase-like APS55_01985 IPR012788 4-carboxymuconolactone decarboxylase APS55_01985 IPR029032 AhpD-like APS55_01995 IPR000551 MerR-type HTH domain APS55_01995 IPR009061 Putative DNA-binding domain superfamily APS55_02005 IPR030855 Bifunctional ligase/repressor BirA APS55_02005 IPR004408 Biotin--acetyl-CoA-carboxylase ligase APS55_02005 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain APS55_02005 IPR003142 Biotin protein ligase, C-terminal APS55_02005 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_02005 IPR004409 Biotin operon repressor, helix-turn-helix domain APS55_02005 IPR036390 Winged helix DNA-binding domain superfamily APS55_02005 IPR008988 Transcriptional repressor, C-terminal APS55_02005 IPR013196 Helix-turn-helix, type 11 APS55_02015 IPR000551 MerR-type HTH domain APS55_02015 IPR009061 Putative DNA-binding domain superfamily APS55_02020 IPR018170 Aldo/keto reductase, conserved site APS55_02020 IPR020471 Aldo/keto reductase APS55_02020 IPR023210 NADP-dependent oxidoreductase domain APS55_02020 IPR036812 NADP-dependent oxidoreductase domain superfamily APS55_02030 IPR017871 ABC transporter, conserved site APS55_02030 IPR003439 ABC transporter-like APS55_02030 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_02030 IPR003593 AAA+ ATPase domain APS55_02060 IPR002293 Amino acid/polyamine transporter I APS55_02065 IPR013149 Alcohol dehydrogenase, C-terminal APS55_02065 IPR013154 Alcohol dehydrogenase, N-terminal APS55_02065 IPR036291 NAD(P)-binding domain superfamily APS55_02065 IPR027399 Alcohol dehydrogenase GroES-associated APS55_02065 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site APS55_02065 IPR011032 GroES-like superfamily APS55_02070 IPR036397 Ribonuclease H superfamily APS55_02070 IPR012337 Ribonuclease H-like superfamily APS55_02070 IPR001584 Integrase, catalytic core APS55_02070 IPR038965 Transposase InsF-like APS55_02070 IPR025948 HTH-like domain APS55_02110 IPR036390 Winged helix DNA-binding domain superfamily APS55_02110 IPR005149 Transcription regulator PadR, N-terminal APS55_02110 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_02115 IPR006232 Sucrose-6-phosphate hydrolase APS55_02115 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily APS55_02115 IPR013189 Glycosyl hydrolase family 32, C-terminal APS55_02115 IPR013148 Glycosyl hydrolase family 32, N-terminal APS55_02115 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily APS55_02115 IPR001362 Glycoside hydrolase, family 32 APS55_02115 IPR018053 Glycoside hydrolase, family 32, active site APS55_02120 IPR000600 ROK family APS55_02125 IPR001672 Phosphoglucose isomerase (PGI) APS55_02125 IPR035482 Phosphoglucose isomerase, SIS domain 2 APS55_02125 IPR035476 Phosphoglucose isomerase, SIS domain 1 APS55_02125 IPR018189 Phosphoglucose isomerase, conserved site APS55_02130 IPR000600 ROK family APS55_02150 IPR000551 MerR-type HTH domain APS55_02150 IPR009061 Putative DNA-binding domain superfamily APS55_02160 IPR016181 Acyl-CoA N-acyltransferase APS55_02160 IPR000182 GNAT domain APS55_02190 IPR036397 Ribonuclease H superfamily APS55_02190 IPR038965 Transposase InsF-like APS55_02190 IPR001584 Integrase, catalytic core APS55_02190 IPR012337 Ribonuclease H-like superfamily APS55_02255 IPR008978 HSP20-like chaperone APS55_02255 IPR031107 Small heat shock protein HSP20 APS55_02255 IPR002068 Alpha crystallin/Hsp20 domain APS55_02260 IPR002068 Alpha crystallin/Hsp20 domain APS55_02260 IPR008978 HSP20-like chaperone APS55_02260 IPR031107 Small heat shock protein HSP20 APS55_02270 IPR003594 Histidine kinase/HSP90-like ATPase APS55_02270 IPR005467 Histidine kinase domain APS55_02270 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APS55_02270 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily APS55_02270 IPR004358 Signal transduction histidine kinase-related protein, C-terminal APS55_02270 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain APS55_02275 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_02275 IPR011006 CheY-like superfamily APS55_02275 IPR001867 OmpR/PhoB-type DNA-binding domain APS55_02275 IPR001789 Signal transduction response regulator, receiver domain APS55_02275 IPR039420 Transcriptional regulatory protein WalR-like APS55_02285 IPR038731 Glycosyltransferase RgtA/B/C/D-like APS55_02290 IPR029044 Nucleotide-diphospho-sugar transferases APS55_02290 IPR001173 Glycosyltransferase 2-like APS55_02310 IPR005170 Transporter-associated domain APS55_02310 IPR000644 CBS domain APS55_02310 IPR036318 FAD-binding, type PCMH-like superfamily APS55_02310 IPR016169 FAD-binding, type PCMH, subdomain 2 APS55_02310 IPR002550 CNNM, transmembrane domain APS55_02315 IPR029039 Flavoprotein-like superfamily APS55_02315 IPR004465 Ribonucleotide reductase Class Ib, NrdI APS55_02320 IPR036259 MFS transporter superfamily APS55_02320 IPR020846 Major facilitator superfamily domain APS55_02320 IPR011701 Major facilitator superfamily APS55_02325 IPR001282 Glucose-6-phosphate dehydrogenase APS55_02325 IPR019796 Glucose-6-phosphate dehydrogenase, active site APS55_02325 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal APS55_02325 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding APS55_02325 IPR036291 NAD(P)-binding domain superfamily APS55_02330 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily APS55_02330 IPR006114 6-phosphogluconate dehydrogenase, C-terminal APS55_02330 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating APS55_02330 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding APS55_02330 IPR013328 6-phosphogluconate dehydrogenase, domain 2 APS55_02330 IPR006184 6-phosphogluconate-binding site APS55_02330 IPR036291 NAD(P)-binding domain superfamily APS55_02330 IPR006183 6-phosphogluconate dehydrogenase APS55_02335 IPR011706 Multicopper oxidase, type 2 APS55_02335 IPR002355 Multicopper oxidase, copper-binding site APS55_02335 IPR008972 Cupredoxin APS55_02335 IPR011707 Multicopper oxidase, type 3 APS55_02335 IPR033138 Multicopper oxidases, conserved site APS55_02340 IPR006130 Aspartate/ornithine carbamoyltransferase APS55_02340 IPR024904 Ornithine carbamoyltransferase APS55_02340 IPR002292 Ornithine/putrescine carbamoyltransferase APS55_02340 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain APS55_02340 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily APS55_02340 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding APS55_02345 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_02345 IPR004636 Acetylornithine/Succinylornithine transaminase family APS55_02345 IPR005814 Aminotransferase class-III APS55_02345 IPR015424 Pyridoxal phosphate-dependent transferase APS55_02345 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_02350 IPR037528 Acetylglutamate kinase ArgB APS55_02350 IPR001048 Aspartate/glutamate/uridylate kinase APS55_02350 IPR004662 Acetylglutamate kinase family APS55_02350 IPR036393 Acetylglutamate kinase-like superfamily APS55_02355 IPR042195 ArgJ beta chain, C-terminal domain APS55_02355 IPR002813 Arginine biosynthesis protein ArgJ APS55_02355 IPR016117 ArgJ-like domain superfamily APS55_02360 IPR036291 NAD(P)-binding domain superfamily APS55_02360 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 APS55_02360 IPR012280 Semialdehyde dehydrogenase, dimerisation domain APS55_02360 IPR000534 Semialdehyde dehydrogenase, NAD-binding APS55_02360 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site APS55_02365 IPR017926 Glutamine amidotransferase APS55_02365 IPR006274 Carbamoyl-phosphate synthase, small subunit APS55_02365 IPR029062 Class I glutamine amidotransferase-like APS55_02365 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily APS55_02365 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain APS55_02365 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain APS55_02370 IPR016185 Pre-ATP-grasp domain superfamily APS55_02370 IPR011607 Methylglyoxal synthase-like domain APS55_02370 IPR006275 Carbamoyl-phosphate synthase, large subunit APS55_02370 IPR011761 ATP-grasp fold APS55_02370 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain APS55_02370 IPR036914 Methylglyoxal synthase-like domain superfamily APS55_02370 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain APS55_02370 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain APS55_02370 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain APS55_02370 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily APS55_02375 IPR036458 Sodium:dicarboxylate symporter superfamily APS55_02375 IPR018107 Sodium:dicarboxylate symporter, conserved site APS55_02375 IPR001991 Sodium:dicarboxylate symporter APS55_02375 IPR033380 Glutamate-aspartate symport protein GltP/GltT APS55_02395 IPR002155 Thiolase APS55_02395 IPR020615 Thiolase, acyl-enzyme intermediate active site APS55_02395 IPR020617 Thiolase, C-terminal APS55_02395 IPR020613 Thiolase, conserved site APS55_02395 IPR016039 Thiolase-like APS55_02395 IPR020616 Thiolase, N-terminal APS55_02410 IPR038063 L,D-transpeptidase catalytic domain-like APS55_02410 IPR005490 L,D-transpeptidase catalytic domain APS55_02425 IPR027574 Thiaminase II APS55_02425 IPR004305 Thiaminase-2/PQQC APS55_02425 IPR016084 Haem oxygenase-like, multi-helical APS55_02430 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase APS55_02430 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase APS55_02430 IPR029056 Ribokinase-like APS55_02435 IPR022998 Thiamine phosphate synthase/TenI APS55_02435 IPR034291 Thiamine phosphate synthase APS55_02435 IPR036206 Thiamin phosphate synthase superfamily APS55_02435 IPR013785 Aldolase-type TIM barrel APS55_02440 IPR000417 Hydroxyethylthiazole kinase APS55_02440 IPR029056 Ribokinase-like APS55_02450 IPR010972 Beta-phosphoglucomutase APS55_02450 IPR010976 Beta-phosphoglucomutase hydrolase APS55_02450 IPR023214 HAD superfamily APS55_02450 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APS55_02450 IPR041492 Haloacid dehalogenase-like hydrolase APS55_02450 IPR036412 HAD-like superfamily APS55_02450 IPR006439 HAD hydrolase, subfamily IA APS55_02455 IPR008928 Six-hairpin glycosidase superfamily APS55_02455 IPR005194 Glycoside hydrolase family 65, C-terminal APS55_02455 IPR005195 Glycoside hydrolase, family 65, central catalytic APS55_02455 IPR012341 Six-hairpin glycosidase-like superfamily APS55_02455 IPR005196 Glycoside hydrolase, family 65, N-terminal APS55_02455 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily APS55_02455 IPR011013 Galactose mutarotase-like domain superfamily APS55_02455 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase APS55_02460 IPR036259 MFS transporter superfamily APS55_02460 IPR018043 Sodium:galactoside symporter, conserved site APS55_02460 IPR001927 Sodium:galactoside symporter APS55_02460 IPR039672 Lactose permease-like APS55_02470 IPR002347 Short-chain dehydrogenase/reductase SDR APS55_02470 IPR036291 NAD(P)-binding domain superfamily APS55_02470 IPR020904 Short-chain dehydrogenase/reductase, conserved site APS55_02470 IPR014007 Acetoin reductase APS55_02475 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily APS55_02475 IPR006322 Glutathione reductase, eukaryote/bacterial APS55_02475 IPR036188 FAD/NAD(P)-binding domain superfamily APS55_02475 IPR023753 FAD/NAD(P)-binding domain APS55_02475 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APS55_02475 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site APS55_02475 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I APS55_02480 IPR006322 Glutathione reductase, eukaryote/bacterial APS55_02480 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APS55_02480 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I APS55_02480 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily APS55_02480 IPR023753 FAD/NAD(P)-binding domain APS55_02480 IPR036188 FAD/NAD(P)-binding domain superfamily APS55_02480 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site APS55_02490 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_02490 IPR006015 Universal stress protein A family APS55_02490 IPR006016 UspA APS55_02495 IPR001046 NRAMP family APS55_02500 IPR032466 Metal-dependent hydrolase APS55_02500 IPR026912 Adenine deaminase C-terminal domain APS55_02500 IPR011059 Metal-dependent hydrolase, composite domain superfamily APS55_02500 IPR006680 Amidohydrolase-related APS55_02500 IPR006679 Adenine deaminase APS55_02525 IPR001478 PDZ domain APS55_02525 IPR001940 Peptidase S1C APS55_02525 IPR009003 Peptidase S1, PA clan APS55_02525 IPR036034 PDZ superfamily APS55_02530 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APS55_02530 IPR001279 Metallo-beta-lactamase APS55_02545 IPR004358 Signal transduction histidine kinase-related protein, C-terminal APS55_02545 IPR029151 Periplasmic sensor-like domain superfamily APS55_02545 IPR035965 PAS domain superfamily APS55_02545 IPR003594 Histidine kinase/HSP90-like ATPase APS55_02545 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily APS55_02545 IPR005467 Histidine kinase domain APS55_02545 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain APS55_02545 IPR000700 PAS-associated, C-terminal APS55_02545 IPR029150 Double Cache domain 3 APS55_02545 IPR003660 HAMP domain APS55_02545 IPR000014 PAS domain APS55_02545 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APS55_02550 IPR039420 Transcriptional regulatory protein WalR-like APS55_02550 IPR016032 Signal transduction response regulator, C-terminal effector APS55_02550 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_02550 IPR001789 Signal transduction response regulator, receiver domain APS55_02550 IPR001867 OmpR/PhoB-type DNA-binding domain APS55_02550 IPR011006 CheY-like superfamily APS55_02565 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_02565 IPR002052 DNA methylase, N-6 adenine-specific, conserved site APS55_02565 IPR002941 DNA methylase N-4/N-6 APS55_02565 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class APS55_02565 IPR001091 Restriction/modification DNA-methylase APS55_02575 IPR038770 Sodium/solute symporter superfamily APS55_02575 IPR004771 K+/H+ exchanger APS55_02575 IPR006153 Cation/H+ exchanger APS55_02595 IPR038770 Sodium/solute symporter superfamily APS55_02595 IPR004771 K+/H+ exchanger APS55_02595 IPR006153 Cation/H+ exchanger APS55_02605 IPR005144 ATP-cone domain APS55_02605 IPR001150 Glycine radical domain APS55_02605 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic APS55_02605 IPR019777 Formate C-acetyltransferase glycine radical, conserved site APS55_02610 IPR001989 Radical-activating enzyme, conserved site APS55_02610 IPR034457 Organic radical-activating enzymes APS55_02610 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic APS55_02610 IPR013785 Aldolase-type TIM barrel APS55_02615 IPR017871 ABC transporter, conserved site APS55_02615 IPR003439 ABC transporter-like APS55_02615 IPR003593 AAA+ ATPase domain APS55_02615 IPR010230 FeS cluster assembly SUF system, ATPase SufC APS55_02615 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_02620 IPR011542 SUF system FeS cluster assembly, SufD APS55_02620 IPR000825 SUF system FeS cluster assembly, SufBD APS55_02620 IPR037284 SUF system FeS cluster assembly, SufBD superfamily APS55_02625 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APS55_02625 IPR010970 Cysteine desulfurase, SufS APS55_02625 IPR016454 Cysteine desulfurase APS55_02625 IPR015424 Pyridoxal phosphate-dependent transferase APS55_02625 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_02625 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_02625 IPR000192 Aminotransferase class V domain APS55_02635 IPR010231 SUF system FeS cluster assembly, SufB APS55_02635 IPR000825 SUF system FeS cluster assembly, SufBD APS55_02635 IPR037284 SUF system FeS cluster assembly, SufBD superfamily APS55_02640 IPR004708 Aspartate ammonia-lyase APS55_02640 IPR024083 Fumarase/histidase, N-terminal APS55_02640 IPR018951 Fumarase C, C-terminal APS55_02640 IPR022761 Fumarate lyase, N-terminal APS55_02640 IPR008948 L-Aspartase-like APS55_02640 IPR000362 Fumarate lyase family APS55_02640 IPR020557 Fumarate lyase, conserved site APS55_02650 IPR016181 Acyl-CoA N-acyltransferase APS55_02650 IPR000182 GNAT domain APS55_02655 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_02655 IPR036390 Winged helix DNA-binding domain superfamily APS55_02655 IPR000835 MarR-type HTH domain APS55_02655 IPR023187 Transcriptional regulator MarR-type, conserved site APS55_02660 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APS55_02660 IPR036291 NAD(P)-binding domain superfamily APS55_02660 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain APS55_02660 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 APS55_02660 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APS55_02665 IPR004839 Aminotransferase, class I/classII APS55_02665 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site APS55_02665 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_02665 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_02665 IPR015424 Pyridoxal phosphate-dependent transferase APS55_02670 IPR000914 Solute-binding protein family 5 domain APS55_02670 IPR023765 Solute-binding protein family 5, conserved site APS55_02670 IPR039424 Solute-binding protein family 5 APS55_02670 IPR030678 Peptide/nickel binding protein, MppA-type APS55_02675 IPR002195 Dihydroorotase, conserved site APS55_02675 IPR011059 Metal-dependent hydrolase, composite domain superfamily APS55_02675 IPR004722 Dihydroorotase APS55_02675 IPR006680 Amidohydrolase-related APS55_02675 IPR032466 Metal-dependent hydrolase APS55_02685 IPR007692 DNA helicase, DnaB type APS55_02685 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily APS55_02685 IPR003593 AAA+ ATPase domain APS55_02685 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal APS55_02685 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_02685 IPR007694 DNA helicase, DnaB-like, C-terminal APS55_02685 IPR007693 DNA helicase, DnaB-like, N-terminal APS55_02690 IPR036935 Ribosomal protein L9, N-terminal domain superfamily APS55_02690 IPR000244 Ribosomal protein L9 APS55_02690 IPR036791 Ribosomal protein L9, C-terminal domain superfamily APS55_02690 IPR020069 Ribosomal protein L9, C-terminal APS55_02690 IPR020594 Ribosomal protein L9, bacteria/chloroplast APS55_02690 IPR009027 Ribosomal protein L9/RNase H1, N-terminal APS55_02690 IPR020070 Ribosomal protein L9, N-terminal APS55_02695 IPR038763 DHH phosphoesterase superfamily APS55_02695 IPR003156 DHHA1 domain APS55_02695 IPR014528 Cyclic-di-AMP phosphodiesterase GdpP/PdeA APS55_02695 IPR000160 GGDEF domain APS55_02695 IPR001667 DDH domain APS55_02700 IPR001648 Ribosomal protein S18 APS55_02700 IPR036870 Ribosomal protein S18 superfamily APS55_02700 IPR018275 Ribosomal protein S18, conserved site APS55_02705 IPR012340 Nucleic acid-binding, OB-fold APS55_02705 IPR000424 Primosome PriB/single-strand DNA-binding APS55_02705 IPR011344 Single-stranded DNA-binding protein APS55_02710 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 APS55_02710 IPR035980 Ribosomal protein S6 superfamily APS55_02710 IPR020814 Ribosomal protein S6, plastid/chloroplast APS55_02710 IPR000529 Ribosomal protein S6 APS55_02725 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat APS55_02725 IPR013760 DNA topoisomerase, type IIA-like domain superfamily APS55_02725 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal APS55_02725 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta APS55_02725 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily APS55_02725 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal APS55_02725 IPR005743 DNA gyrase, subunit A APS55_02730 IPR013760 DNA topoisomerase, type IIA-like domain superfamily APS55_02730 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APS55_02730 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_02730 IPR001241 DNA topoisomerase, type IIA APS55_02730 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_02730 IPR003594 Histidine kinase/HSP90-like ATPase APS55_02730 IPR006171 TOPRIM domain APS55_02730 IPR018522 DNA topoisomerase, type IIA, conserved site APS55_02730 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 APS55_02730 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal APS55_02730 IPR011557 DNA gyrase, subunit B APS55_02730 IPR034160 DNA gyrase subunit B, TOPRIM domain APS55_02730 IPR002288 DNA gyrase B subunit, C-terminal APS55_02735 IPR001238 DNA-binding, RecF APS55_02735 IPR018078 DNA-binding, RecF, conserved site APS55_02735 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_02735 IPR003395 RecF/RecN/SMC, N-terminal APS55_02735 IPR042174 DNA-binding RecF, domain 2 APS55_02740 IPR014330 RNA-binding S4-related,YaaA APS55_02740 IPR002942 RNA-binding S4 domain APS55_02740 IPR036986 RNA-binding S4 domain superfamily APS55_02745 IPR036005 Creatinase/aminopeptidase-like APS55_02745 IPR000994 Peptidase M24 APS55_02745 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site APS55_02745 IPR000587 Creatinase, N-terminal APS55_02745 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APS55_02750 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal APS55_02750 IPR022637 DNA polymerase III, beta sliding clamp, central APS55_02750 IPR001001 DNA polymerase III, beta sliding clamp APS55_02750 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal APS55_02755 IPR013317 Chromosomal replication initiator protein DnaA APS55_02755 IPR010921 Trp repressor/replication initiator APS55_02755 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_02755 IPR013159 Chromosomal replication initiator, DnaA C-terminal APS55_02755 IPR038454 DnaA, N-terminal domain superfamily APS55_02755 IPR003593 AAA+ ATPase domain APS55_02755 IPR020591 Chromosomal replication control, initiator DnaA-like APS55_02755 IPR018312 Chromosomal replication control, initiator DnaA, conserved site APS55_02755 IPR024633 DnaA N-terminal domain APS55_02755 IPR001957 Chromosomal replication control, initiator DnaA APS55_02760 IPR000271 Ribosomal protein L34 APS55_02760 IPR020939 Ribosomal protein L34, conserved site APS55_02765 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_02765 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_02765 IPR000100 Ribonuclease P APS55_02770 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes APS55_02770 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 APS55_02770 IPR028055 Membrane insertase YidC/Oxa1, C-terminal APS55_02775 IPR032782 Jag, N-terminal APS55_02775 IPR015946 K homology domain-like, alpha/beta APS55_02775 IPR004087 K Homology domain APS55_02775 IPR038008 Jag, KH domain APS55_02775 IPR001374 R3H domain APS55_02775 IPR038247 Jag, N-terminal domain superfamily APS55_02775 IPR036867 R3H domain superfamily APS55_02775 IPR039247 Jag protein APS55_02775 IPR034079 Jag, R3H domain APS55_02780 IPR031168 TrmE-type guanine nucleotide-binding domain APS55_02780 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 APS55_02780 IPR025867 MnmE, helical domain APS55_02780 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_02780 IPR018948 GTP-binding protein TrmE, N-terminal APS55_02780 IPR006073 GTP binding domain APS55_02780 IPR004520 tRNA modification GTPase MnmE APS55_02780 IPR027368 tRNA modification GTPase MnmE domain 2 APS55_02780 IPR005225 Small GTP-binding protein domain APS55_02785 IPR036188 FAD/NAD(P)-binding domain superfamily APS55_02785 IPR020595 MnmG-related, conserved site APS55_02785 IPR026904 GidA associated domain 3 APS55_02785 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG APS55_02785 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related APS55_02795 IPR000223 Peptidase S26A, signal peptidase I APS55_02795 IPR019756 Peptidase S26A, signal peptidase I, serine active site APS55_02795 IPR019533 Peptidase S26 APS55_02795 IPR019757 Peptidase S26A, signal peptidase I, lysine active site APS55_02795 IPR036286 LexA/Signal peptidase-like superfamily APS55_02810 IPR005814 Aminotransferase class-III APS55_02810 IPR015424 Pyridoxal phosphate-dependent transferase APS55_02810 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_02810 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_02815 IPR038765 Papain-like cysteine peptidase superfamily APS55_02815 IPR000169 Cysteine peptidase, cysteine active site APS55_02815 IPR004134 Peptidase C1B, bleomycin hydrolase APS55_02815 IPR025660 Cysteine peptidase, histidine active site APS55_02820 IPR025660 Cysteine peptidase, histidine active site APS55_02820 IPR000169 Cysteine peptidase, cysteine active site APS55_02820 IPR004134 Peptidase C1B, bleomycin hydrolase APS55_02820 IPR038765 Papain-like cysteine peptidase superfamily APS55_02825 IPR001518 Argininosuccinate synthase APS55_02825 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_02825 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body APS55_02825 IPR023434 Argininosuccinate synthase, type 1 subfamily APS55_02825 IPR018223 Argininosuccinate synthase, conserved site APS55_02830 IPR024083 Fumarase/histidase, N-terminal APS55_02830 IPR029419 Argininosuccinate lyase, C-terminal APS55_02830 IPR009049 Argininosuccinate lyase APS55_02830 IPR008948 L-Aspartase-like APS55_02830 IPR020557 Fumarate lyase, conserved site APS55_02830 IPR022761 Fumarate lyase, N-terminal APS55_02830 IPR000362 Fumarate lyase family APS55_02835 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain APS55_02835 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_02835 IPR035906 MetI-like superfamily APS55_02840 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_02840 IPR017871 ABC transporter, conserved site APS55_02840 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type APS55_02840 IPR003593 AAA+ ATPase domain APS55_02840 IPR003439 ABC transporter-like APS55_02860 IPR006276 Cobalamin-independent methionine synthase APS55_02860 IPR038071 UROD/MetE-like superfamily APS55_02860 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal APS55_02860 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal APS55_02865 IPR033752 MetA family APS55_02865 IPR029062 Class I glutamine amidotransferase-like APS55_02870 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_02870 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme APS55_02870 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase APS55_02870 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_02870 IPR015424 Pyridoxal phosphate-dependent transferase APS55_02875 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme APS55_02875 IPR015424 Pyridoxal phosphate-dependent transferase APS55_02875 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_02875 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_02880 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding APS55_02880 IPR016204 Homoserine dehydrogenase APS55_02880 IPR001342 Homoserine dehydrogenase, catalytic APS55_02880 IPR019811 Homoserine dehydrogenase, conserved site APS55_02880 IPR036291 NAD(P)-binding domain superfamily APS55_02880 IPR002912 ACT domain APS55_02890 IPR038965 Transposase InsF-like APS55_02890 IPR001584 Integrase, catalytic core APS55_02890 IPR036397 Ribonuclease H superfamily APS55_02890 IPR012337 Ribonuclease H-like superfamily APS55_02905 IPR027379 Cardiolipin synthase N-terminal APS55_02905 IPR001736 Phospholipase D/Transphosphatidylase APS55_02905 IPR022924 Cardiolipin synthase APS55_02905 IPR030874 Cardiolipin synthase, Firmicutes-type APS55_02905 IPR025202 Phospholipase D-like domain APS55_02910 IPR029057 Phosphoribosyltransferase-like APS55_02910 IPR004467 Orotate phosphoribosyl transferase domain APS55_02910 IPR000836 Phosphoribosyltransferase domain APS55_02910 IPR023031 Orotate phosphoribosyltransferase APS55_02915 IPR013785 Aldolase-type TIM barrel APS55_02915 IPR018089 Orotidine 5'-phosphate decarboxylase, active site APS55_02915 IPR001754 Orotidine 5'-phosphate decarboxylase domain APS55_02915 IPR011060 Ribulose-phosphate binding barrel APS55_02915 IPR014732 Orotidine 5'-phosphate decarboxylase APS55_02920 IPR020846 Major facilitator superfamily domain APS55_02920 IPR011701 Major facilitator superfamily APS55_02920 IPR005829 Sugar transporter, conserved site APS55_02920 IPR036259 MFS transporter superfamily APS55_02930 IPR038965 Transposase InsF-like APS55_02930 IPR001584 Integrase, catalytic core APS55_02930 IPR012337 Ribonuclease H-like superfamily APS55_02930 IPR036397 Ribonuclease H superfamily APS55_02930 IPR025948 HTH-like domain APS55_02950 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted APS55_02950 IPR003646 SH3-like domain, bacterial-type APS55_02950 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain APS55_02955 IPR003439 ABC transporter-like APS55_02955 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_02955 IPR017882 Zinc import ATP-binding protein ZnuC APS55_02955 IPR003593 AAA+ ATPase domain APS55_02960 IPR037294 ABC transporter, BtuC-like APS55_02960 IPR001626 ABC transporter, TroCD-like APS55_02975 IPR013570 Transcription regulator YsiA, C-terminal APS55_02975 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APS55_02975 IPR001647 DNA-binding HTH domain, TetR-type APS55_02975 IPR009057 Homeobox-like domain superfamily APS55_02980 IPR013842 GTP-binding protein LepA, C-terminal APS55_02980 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_02980 IPR038363 LepA, C-terminal domain superfamily APS55_02980 IPR000640 Elongation factor EFG, domain V-like APS55_02980 IPR005225 Small GTP-binding protein domain APS55_02980 IPR035647 EF-G domain III/V-like APS55_02980 IPR006297 Elongation factor 4 APS55_02980 IPR009000 Translation protein, beta-barrel domain superfamily APS55_02980 IPR000795 Transcription factor, GTP-binding domain APS55_02980 IPR035654 Elongation factor 4, domain IV APS55_02985 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APS55_02985 IPR018146 Glyoxalase I, conserved site APS55_02985 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APS55_02985 IPR037523 Vicinal oxygen chelate (VOC) domain APS55_02990 IPR011032 GroES-like superfamily APS55_02990 IPR036291 NAD(P)-binding domain superfamily APS55_02990 IPR013149 Alcohol dehydrogenase, C-terminal APS55_02990 IPR013154 Alcohol dehydrogenase, N-terminal APS55_02990 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site APS55_02995 IPR000600 ROK family APS55_03000 IPR003691 Putative fluoride ion transporter CrcB APS55_03005 IPR003691 Putative fluoride ion transporter CrcB APS55_03010 IPR012337 Ribonuclease H-like superfamily APS55_03010 IPR002156 Ribonuclease H domain APS55_03010 IPR022892 Ribonuclease HI APS55_03010 IPR036397 Ribonuclease H superfamily APS55_03020 IPR006043 Xanthine/uracil/vitamin C permease APS55_03020 IPR026033 Azaguanine-like transporters APS55_03025 IPR020471 Aldo/keto reductase APS55_03025 IPR018170 Aldo/keto reductase, conserved site APS55_03025 IPR036812 NADP-dependent oxidoreductase domain superfamily APS55_03025 IPR023210 NADP-dependent oxidoreductase domain APS55_03040 IPR004841 Amino acid permease/ SLC12A domain APS55_03045 IPR004840 Amino acid permease, conserved site APS55_03045 IPR004841 Amino acid permease/ SLC12A domain APS55_03065 IPR009078 Ferritin-like superfamily APS55_03065 IPR012347 Ferritin-like APS55_03065 IPR039377 Manganese catalase, ferritin-like di-iron-binding domain APS55_03065 IPR007760 Manganese catalase APS55_03065 IPR027407 Manganese catalase, C-terminal APS55_03070 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type APS55_03070 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03070 IPR000212 DNA helicase, UvrD/REP type APS55_03070 IPR014141 DNA helicase subunit RexB APS55_03075 IPR011335 Restriction endonuclease type II-like APS55_03075 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03075 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type APS55_03075 IPR014016 UvrD-like helicase, ATP-binding domain APS55_03075 IPR000212 DNA helicase, UvrD/REP type APS55_03075 IPR014017 UvrD-like DNA helicase, C-terminal APS55_03075 IPR034739 UvrD/AddA helicase, N-terminal APS55_03075 IPR014152 DNA helicase subunit AddA APS55_03075 IPR011604 Exonuclease, phage-type/RecB, C-terminal APS55_03085 IPR017871 ABC transporter, conserved site APS55_03085 IPR003439 ABC transporter-like APS55_03085 IPR025302 Domain of unknown function DUF4162 APS55_03085 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03085 IPR003593 AAA+ ATPase domain APS55_03090 IPR018211 Alcohol dehydrogenase, iron-type, conserved site APS55_03090 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain APS55_03090 IPR016161 Aldehyde/histidinol dehydrogenase APS55_03090 IPR016163 Aldehyde dehydrogenase, C-terminal APS55_03090 IPR016162 Aldehyde dehydrogenase, N-terminal APS55_03090 IPR015590 Aldehyde dehydrogenase domain APS55_03090 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase APS55_03090 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA APS55_03090 IPR039697 Iron-type alcohol dehydrogenase-like APS55_03100 IPR018383 Uncharacterised protein family UPF0324, prokaryote APS55_03110 IPR004638 Drug resistance transporter EmrB-like APS55_03110 IPR011701 Major facilitator superfamily APS55_03110 IPR020846 Major facilitator superfamily domain APS55_03110 IPR036259 MFS transporter superfamily APS55_03120 IPR003439 ABC transporter-like APS55_03120 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type APS55_03120 IPR003593 AAA+ ATPase domain APS55_03120 IPR017871 ABC transporter, conserved site APS55_03120 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03125 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain APS55_03125 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_03125 IPR035906 MetI-like superfamily APS55_03130 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03130 IPR003593 AAA+ ATPase domain APS55_03130 IPR019489 Clp ATPase, C-terminal APS55_03130 IPR003959 ATPase, AAA-type, core APS55_03130 IPR041546 ClpA/ClpB, AAA lid domain APS55_03130 IPR001270 ClpA/B family APS55_03130 IPR028299 ClpA/B, conserved site 2 APS55_03150 IPR037062 Malic enzyme, N-terminal domain superfamily APS55_03150 IPR036291 NAD(P)-binding domain superfamily APS55_03150 IPR015884 Malic enzyme, conserved site APS55_03150 IPR012301 Malic enzyme, N-terminal domain APS55_03150 IPR001891 Malic oxidoreductase APS55_03150 IPR012302 Malic enzyme, NAD-binding APS55_03155 IPR005119 LysR, substrate-binding APS55_03155 IPR000847 Transcription regulator HTH, LysR APS55_03155 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_03155 IPR036390 Winged helix DNA-binding domain superfamily APS55_03170 IPR038965 Transposase InsF-like APS55_03170 IPR001584 Integrase, catalytic core APS55_03170 IPR012337 Ribonuclease H-like superfamily APS55_03170 IPR036397 Ribonuclease H superfamily APS55_03180 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APS55_03180 IPR018313 Solute-binding protein family 3, conserved site APS55_03185 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03185 IPR017871 ABC transporter, conserved site APS55_03185 IPR003593 AAA+ ATPase domain APS55_03185 IPR003439 ABC transporter-like APS55_03185 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type APS55_03190 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_03190 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain APS55_03190 IPR035906 MetI-like superfamily APS55_03195 IPR006685 Mechanosensitive ion channel MscS APS55_03195 IPR011066 Mechanosensitive ion channel MscS, C-terminal APS55_03195 IPR023408 Mechanosensitive ion channel MscS domain superfamily APS55_03195 IPR010920 LSM domain superfamily APS55_03195 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 APS55_03200 IPR010920 LSM domain superfamily APS55_03200 IPR023408 Mechanosensitive ion channel MscS domain superfamily APS55_03200 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 APS55_03200 IPR006685 Mechanosensitive ion channel MscS APS55_03200 IPR011066 Mechanosensitive ion channel MscS, C-terminal APS55_03215 IPR003439 ABC transporter-like APS55_03215 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03215 IPR025857 MacB-like periplasmic core domain APS55_03215 IPR003593 AAA+ ATPase domain APS55_03215 IPR017911 ABC transporter, macrolide export, ATP-binding domain APS55_03215 IPR017871 ABC transporter, conserved site APS55_03215 IPR003838 ABC transporter permease protein domain APS55_03245 IPR023753 FAD/NAD(P)-binding domain APS55_03245 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APS55_03245 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily APS55_03245 IPR036188 FAD/NAD(P)-binding domain superfamily APS55_03260 IPR003439 ABC transporter-like APS55_03260 IPR003593 AAA+ ATPase domain APS55_03260 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03285 IPR030395 Glycerophosphodiester phosphodiesterase domain APS55_03285 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily APS55_03300 IPR001584 Integrase, catalytic core APS55_03300 IPR012337 Ribonuclease H-like superfamily APS55_03300 IPR036397 Ribonuclease H superfamily APS55_03300 IPR038965 Transposase InsF-like APS55_03320 IPR002912 ACT domain APS55_03320 IPR008310 UPF0735 ACT domain-containing protein APS55_03325 IPR013750 GHMP kinase, C-terminal domain APS55_03325 IPR036554 GHMP kinase, C-terminal domain superfamily APS55_03325 IPR006204 GHMP kinase N-terminal domain APS55_03325 IPR006203 GHMP kinase, ATP-binding, conserved site APS55_03325 IPR000870 Homoserine kinase APS55_03325 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_03325 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_03330 IPR004450 Threonine synthase-like APS55_03330 IPR001926 Pyridoxal-phosphate dependent enzyme APS55_03330 IPR037158 Threonine synthase, N-terminal domain superfamily APS55_03330 IPR029144 Threonine synthase, N-terminal APS55_03330 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APS55_03330 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site APS55_03335 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding APS55_03335 IPR016204 Homoserine dehydrogenase APS55_03335 IPR002912 ACT domain APS55_03335 IPR036291 NAD(P)-binding domain superfamily APS55_03335 IPR019811 Homoserine dehydrogenase, conserved site APS55_03335 IPR001342 Homoserine dehydrogenase, catalytic APS55_03355 IPR010582 Catalase immune-responsive domain APS55_03355 IPR018028 Catalase, mono-functional, haem-containing APS55_03355 IPR040333 Catalase, clade 3 APS55_03355 IPR024708 Catalase active site APS55_03355 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 APS55_03355 IPR011614 Catalase core domain APS55_03355 IPR037060 Catalase core domain superfamily APS55_03355 IPR020835 Catalase superfamily APS55_03355 IPR002226 Catalase haem-binding site APS55_03365 IPR029028 Alpha/beta knot methyltransferases APS55_03365 IPR003742 RNA methyltransferase RlmH APS55_03365 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APS55_03370 IPR010982 Lambda repressor-like, DNA-binding domain superfamily APS55_03370 IPR001387 Cro/C1-type helix-turn-helix domain APS55_03390 IPR017853 Glycoside hydrolase superfamily APS55_03390 IPR018337 Cell wall/choline-binding repeat APS55_03390 IPR022263 KxYKxGKxW signal peptide APS55_03390 IPR027636 Glucan-binding repeat APS55_03390 IPR003318 Glycoside hydrolase, family 70, catalytic domain APS55_03400 IPR024571 ERAP1-like C-terminal domain APS55_03400 IPR034016 Aminopeptidase N-type APS55_03400 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase APS55_03400 IPR014782 Peptidase M1, membrane alanine aminopeptidase APS55_03400 IPR042097 Aminopeptidase N-like , N-terminal APS55_03405 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily APS55_03405 IPR012338 Beta-lactamase/transpeptidase-like APS55_03405 IPR015956 Penicillin-binding protein, C-terminal domain superfamily APS55_03405 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A APS55_03405 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal APS55_03405 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal APS55_03410 IPR033747 Class I PurE APS55_03410 IPR000031 PurE domain APS55_03410 IPR035893 PurE domain superfamily APS55_03410 IPR024694 PurE, prokaryotic type APS55_03415 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain APS55_03415 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit APS55_03415 IPR016185 Pre-ATP-grasp domain superfamily APS55_03415 IPR013815 ATP-grasp fold, subdomain 1 APS55_03415 IPR011761 ATP-grasp fold APS55_03415 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type APS55_03415 IPR011054 Rudiment single hybrid motif APS55_03420 IPR018236 SAICAR synthetase, conserved site APS55_03420 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase APS55_03420 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase APS55_03420 IPR028923 SAICAR synthetase/ADE2, N-terminal APS55_03430 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ APS55_03430 IPR029062 Class I glutamine amidotransferase-like APS55_03430 IPR017926 Glutamine amidotransferase APS55_03435 IPR010074 Phosphoribosylformylglycinamidine subunit PurL APS55_03435 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain APS55_03435 IPR036676 PurM-like, C-terminal domain superfamily APS55_03435 IPR010918 PurM-like, C-terminal domain APS55_03435 IPR016188 PurM-like, N-terminal domain APS55_03435 IPR036921 PurM-like, N-terminal domain superfamily APS55_03440 IPR029057 Phosphoribosyltransferase-like APS55_03440 IPR000836 Phosphoribosyltransferase domain APS55_03440 IPR017932 Glutamine amidotransferase type 2 domain APS55_03440 IPR005854 Amidophosphoribosyltransferase APS55_03440 IPR029055 Nucleophile aminohydrolases, N-terminal APS55_03440 IPR035584 Amidophosphoribosyltransferase, N-terminal APS55_03445 IPR036676 PurM-like, C-terminal domain superfamily APS55_03445 IPR010918 PurM-like, C-terminal domain APS55_03445 IPR036921 PurM-like, N-terminal domain superfamily APS55_03445 IPR016188 PurM-like, N-terminal domain APS55_03445 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase APS55_03450 IPR002376 Formyl transferase, N-terminal APS55_03450 IPR036477 Formyl transferase, N-terminal domain superfamily APS55_03450 IPR004607 Phosphoribosylglycinamide formyltransferase APS55_03450 IPR001555 Phosphoribosylglycinamide formyltransferase, active site APS55_03455 IPR002695 Bifunctional purine biosynthesis protein PurH-like APS55_03455 IPR016193 Cytidine deaminase-like APS55_03455 IPR011607 Methylglyoxal synthase-like domain APS55_03455 IPR036914 Methylglyoxal synthase-like domain superfamily APS55_03455 IPR024051 AICAR transformylase, duplicated domain superfamily APS55_03460 IPR013815 ATP-grasp fold, subdomain 1 APS55_03460 IPR011761 ATP-grasp fold APS55_03460 IPR011054 Rudiment single hybrid motif APS55_03460 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily APS55_03460 IPR020560 Phosphoribosylglycinamide synthetase, C-domain APS55_03460 IPR000115 Phosphoribosylglycinamide synthetase APS55_03460 IPR020559 Phosphoribosylglycinamide synthetase, conserved site APS55_03460 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APS55_03460 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal APS55_03460 IPR016185 Pre-ATP-grasp domain superfamily APS55_03470 IPR020846 Major facilitator superfamily domain APS55_03470 IPR011701 Major facilitator superfamily APS55_03470 IPR036259 MFS transporter superfamily APS55_03470 IPR005829 Sugar transporter, conserved site APS55_03480 IPR036390 Winged helix DNA-binding domain superfamily APS55_03480 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_03480 IPR000944 Transcription regulator Rrf2-type APS55_03485 IPR036291 NAD(P)-binding domain superfamily APS55_03485 IPR008030 NmrA-like domain APS55_03505 IPR029035 DHS-like NAD/FAD-binding domain superfamily APS55_03505 IPR012000 Thiamine pyrophosphate enzyme, central domain APS55_03505 IPR000399 TPP-binding enzyme, conserved site APS55_03505 IPR012782 Acetolactate synthase, catabolic APS55_03505 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain APS55_03505 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding APS55_03505 IPR029061 Thiamin diphosphate-binding fold APS55_03525 IPR012337 Ribonuclease H-like superfamily APS55_03525 IPR036397 Ribonuclease H superfamily APS55_03525 IPR038965 Transposase InsF-like APS55_03525 IPR001584 Integrase, catalytic core APS55_03545 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG APS55_03545 IPR023692 Multidrug resistance protein MdtG APS55_03545 IPR036259 MFS transporter superfamily APS55_03545 IPR011701 Major facilitator superfamily APS55_03545 IPR020846 Major facilitator superfamily domain APS55_03555 IPR023663 NADPH dehydrogenase APS55_03555 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal APS55_03555 IPR013785 Aldolase-type TIM barrel APS55_03570 IPR029062 Class I glutamine amidotransferase-like APS55_03570 IPR006286 Deglycase PfpI APS55_03570 IPR002818 DJ-1/PfpI APS55_03580 IPR036397 Ribonuclease H superfamily APS55_03580 IPR038965 Transposase InsF-like APS55_03580 IPR001584 Integrase, catalytic core APS55_03580 IPR012337 Ribonuclease H-like superfamily APS55_03590 IPR023271 Aquaporin-like APS55_03590 IPR000425 Major intrinsic protein APS55_03590 IPR022357 Major intrinsic protein, conserved site APS55_03595 IPR005128 Alpha-acetolactate decarboxylase APS55_03605 IPR011438 Domain of unknown function DUF1541 APS55_03625 IPR029062 Class I glutamine amidotransferase-like APS55_03625 IPR011697 Peptidase C26 APS55_03625 IPR017926 Glutamine amidotransferase APS55_03630 IPR039424 Solute-binding protein family 5 APS55_03630 IPR030678 Peptide/nickel binding protein, MppA-type APS55_03630 IPR000914 Solute-binding protein family 5 domain APS55_03630 IPR023765 Solute-binding protein family 5, conserved site APS55_03635 IPR023765 Solute-binding protein family 5, conserved site APS55_03635 IPR000914 Solute-binding protein family 5 domain APS55_03635 IPR030678 Peptide/nickel binding protein, MppA-type APS55_03635 IPR039424 Solute-binding protein family 5 APS55_03645 IPR003439 ABC transporter-like APS55_03645 IPR017871 ABC transporter, conserved site APS55_03645 IPR015851 ABC transporter, NodI APS55_03645 IPR005978 Nodulation ABC transporter, NodI APS55_03645 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03645 IPR003593 AAA+ ATPase domain APS55_03655 IPR011006 CheY-like superfamily APS55_03655 IPR001789 Signal transduction response regulator, receiver domain APS55_03655 IPR007492 LytTR DNA-binding domain APS55_03680 IPR022761 Fumarate lyase, N-terminal APS55_03680 IPR000362 Fumarate lyase family APS55_03680 IPR020557 Fumarate lyase, conserved site APS55_03680 IPR018951 Fumarase C, C-terminal APS55_03680 IPR024083 Fumarase/histidase, N-terminal APS55_03680 IPR005677 Fumarate hydratase, class II APS55_03680 IPR008948 L-Aspartase-like APS55_03705 IPR023353 LemA-like domain superfamily APS55_03705 IPR007156 LemA APS55_03715 IPR004685 Branched-chain amino acid transport system II carrier protein APS55_03725 IPR004685 Branched-chain amino acid transport system II carrier protein APS55_03735 IPR036775 DNA polymerase, Y-family, little finger domain superfamily APS55_03735 IPR001126 UmuC domain APS55_03735 IPR024728 DNA polymerase type-Y, HhH motif APS55_03735 IPR017961 DNA polymerase, Y-family, little finger domain APS55_03755 IPR001046 NRAMP family APS55_03760 IPR004474 Cell envelope-related transcriptional attenuator domain APS55_03760 IPR023734 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU APS55_03765 IPR003856 Polysaccharide chain length determinant N-terminal domain APS55_03765 IPR005701 Polysaccharide export protein MPA1-like APS55_03770 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03770 IPR005702 Exopolysaccharide synthesis protein APS55_03770 IPR025669 AAA domain APS55_03775 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC APS55_03775 IPR016195 Polymerase/histidinol phosphatase-like APS55_03780 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase APS55_03780 IPR003362 Bacterial sugar transferase APS55_03785 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain APS55_03785 IPR001296 Glycosyl transferase, family 1 APS55_03790 IPR029044 Nucleotide-diphospho-sugar transferases APS55_03790 IPR001173 Glycosyltransferase 2-like APS55_03810 IPR036259 MFS transporter superfamily APS55_03810 IPR023692 Multidrug resistance protein MdtG APS55_03810 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG APS55_03810 IPR020846 Major facilitator superfamily domain APS55_03810 IPR011701 Major facilitator superfamily APS55_03810 IPR005828 Major facilitator, sugar transporter-like APS55_03825 IPR039424 Solute-binding protein family 5 APS55_03825 IPR030678 Peptide/nickel binding protein, MppA-type APS55_03825 IPR000914 Solute-binding protein family 5 domain APS55_03825 IPR023765 Solute-binding protein family 5, conserved site APS55_03835 IPR022263 KxYKxGKxW signal peptide APS55_03835 IPR017853 Glycoside hydrolase superfamily APS55_03835 IPR003318 Glycoside hydrolase, family 70, catalytic domain APS55_03835 IPR027636 Glucan-binding repeat APS55_03835 IPR018337 Cell wall/choline-binding repeat APS55_03840 IPR018337 Cell wall/choline-binding repeat APS55_03840 IPR027636 Glucan-binding repeat APS55_03840 IPR003318 Glycoside hydrolase, family 70, catalytic domain APS55_03840 IPR017853 Glycoside hydrolase superfamily APS55_03840 IPR022263 KxYKxGKxW signal peptide APS55_03850 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily APS55_03850 IPR036188 FAD/NAD(P)-binding domain superfamily APS55_03850 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APS55_03850 IPR023753 FAD/NAD(P)-binding domain APS55_03860 IPR001584 Integrase, catalytic core APS55_03860 IPR038965 Transposase InsF-like APS55_03860 IPR012337 Ribonuclease H-like superfamily APS55_03860 IPR036397 Ribonuclease H superfamily APS55_03870 IPR002293 Amino acid/polyamine transporter I APS55_03870 IPR004758 Amino acid transporter APS55_03875 IPR004840 Amino acid permease, conserved site APS55_03875 IPR004841 Amino acid permease/ SLC12A domain APS55_03880 IPR004840 Amino acid permease, conserved site APS55_03880 IPR004841 Amino acid permease/ SLC12A domain APS55_03885 IPR000835 MarR-type HTH domain APS55_03885 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_03885 IPR036390 Winged helix DNA-binding domain superfamily APS55_03900 IPR003593 AAA+ ATPase domain APS55_03900 IPR022501 Gallidermin ABC transporter, ATP-binding subunit APS55_03900 IPR017871 ABC transporter, conserved site APS55_03900 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03900 IPR003439 ABC transporter-like APS55_03910 IPR005744 Hly-III APS55_03910 IPR004254 AdipoR/Haemolysin-III-related APS55_03915 IPR000390 Small multidrug resistance protein family APS55_03930 IPR038765 Papain-like cysteine peptidase superfamily APS55_03930 IPR018392 LysM domain APS55_03930 IPR036779 LysM domain superfamily APS55_03930 IPR000064 Endopeptidase, NLPC/P60 domain APS55_03930 IPR003646 SH3-like domain, bacterial-type APS55_03955 IPR016040 NAD(P)-binding domain APS55_03955 IPR036291 NAD(P)-binding domain superfamily APS55_03960 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_03960 IPR003593 AAA+ ATPase domain APS55_03960 IPR032781 ABC-transporter extension domain APS55_03960 IPR003439 ABC transporter-like APS55_03985 IPR005843 Alpha-D-phosphohexomutase, C-terminal APS55_03985 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III APS55_03985 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II APS55_03985 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily APS55_03985 IPR016066 Alpha-D-phosphohexomutase, conserved site APS55_03985 IPR005841 Alpha-D-phosphohexomutase superfamily APS55_03985 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I APS55_03985 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III APS55_03990 IPR000415 Nitroreductase-like APS55_03990 IPR029479 Nitroreductase APS55_03990 IPR033878 Nitroreductase NfsB-like APS55_03995 IPR016039 Thiolase-like APS55_03995 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal APS55_03995 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APS55_03995 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 APS55_04000 IPR009081 Phosphopantetheine binding ACP domain APS55_04000 IPR003231 Acyl carrier protein (ACP) APS55_04000 IPR036736 ACP-like superfamily APS55_04005 IPR001227 Acyl transferase domain superfamily APS55_04005 IPR014043 Acyl transferase APS55_04005 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase APS55_04005 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type APS55_04005 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding APS55_04005 IPR024925 Malonyl CoA-acyl carrier protein transacylase APS55_04010 IPR036291 NAD(P)-binding domain superfamily APS55_04010 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase APS55_04010 IPR020904 Short-chain dehydrogenase/reductase, conserved site APS55_04010 IPR002347 Short-chain dehydrogenase/reductase SDR APS55_04015 IPR011053 Single hybrid motif APS55_04015 IPR000089 Biotin/lipoyl attachment APS55_04015 IPR001882 Biotin-binding site APS55_04015 IPR001249 Acetyl-CoA biotin carboxyl carrier APS55_04020 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ APS55_04020 IPR029069 HotDog domain superfamily APS55_04020 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ APS55_04025 IPR016185 Pre-ATP-grasp domain superfamily APS55_04025 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase APS55_04025 IPR011761 ATP-grasp fold APS55_04025 IPR005481 Biotin carboxylase-like, N-terminal domain APS55_04025 IPR011764 Biotin carboxylation domain APS55_04025 IPR005482 Biotin carboxylase, C-terminal APS55_04025 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain APS55_04025 IPR011054 Rudiment single hybrid motif APS55_04030 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal APS55_04030 IPR034733 Acetyl-CoA carboxylase APS55_04030 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit APS55_04030 IPR029045 ClpP/crotonase-like domain superfamily APS55_04035 IPR029045 ClpP/crotonase-like domain superfamily APS55_04035 IPR001095 Acetyl-CoA carboxylase, alpha subunit APS55_04035 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal APS55_04040 IPR036291 NAD(P)-binding domain superfamily APS55_04040 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) APS55_04040 IPR002347 Short-chain dehydrogenase/reductase SDR APS55_04050 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ APS55_04050 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ APS55_04050 IPR029069 HotDog domain superfamily APS55_04055 IPR018201 Beta-ketoacyl synthase, active site APS55_04055 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 APS55_04055 IPR000794 Beta-ketoacyl synthase APS55_04055 IPR014031 Beta-ketoacyl synthase, C-terminal APS55_04055 IPR014030 Beta-ketoacyl synthase, N-terminal APS55_04055 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain APS55_04055 IPR016039 Thiolase-like APS55_04060 IPR005886 UDP-glucose 4-epimerase APS55_04060 IPR036291 NAD(P)-binding domain superfamily APS55_04060 IPR016040 NAD(P)-binding domain APS55_04065 IPR018170 Aldo/keto reductase, conserved site APS55_04065 IPR020471 Aldo/keto reductase APS55_04065 IPR023210 NADP-dependent oxidoreductase domain APS55_04065 IPR036812 NADP-dependent oxidoreductase domain superfamily APS55_04070 IPR000620 EamA domain APS55_04080 IPR000731 Sterol-sensing domain APS55_04080 IPR004869 Membrane transport protein MMPL domain APS55_04090 IPR002293 Amino acid/polyamine transporter I APS55_04095 IPR000620 EamA domain APS55_04140 IPR012156 Cold shock, CspA APS55_04140 IPR019844 Cold-shock (CSD) domain APS55_04140 IPR011129 Cold shock domain APS55_04140 IPR012340 Nucleic acid-binding, OB-fold APS55_04140 IPR002059 Cold-shock protein, DNA-binding APS55_04145 IPR017871 ABC transporter, conserved site APS55_04145 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04145 IPR003439 ABC transporter-like APS55_04145 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal APS55_04145 IPR003593 AAA+ ATPase domain APS55_04150 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04150 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal APS55_04150 IPR017871 ABC transporter, conserved site APS55_04150 IPR003439 ABC transporter-like APS55_04150 IPR003593 AAA+ ATPase domain APS55_04155 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_04155 IPR035906 MetI-like superfamily APS55_04160 IPR035906 MetI-like superfamily APS55_04160 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_04165 IPR000914 Solute-binding protein family 5 domain APS55_04165 IPR023765 Solute-binding protein family 5, conserved site APS55_04165 IPR039424 Solute-binding protein family 5 APS55_04165 IPR030678 Peptide/nickel binding protein, MppA-type APS55_04170 IPR003680 Flavodoxin-like fold APS55_04170 IPR029039 Flavoprotein-like superfamily APS55_04185 IPR025948 HTH-like domain APS55_04185 IPR036397 Ribonuclease H superfamily APS55_04185 IPR001584 Integrase, catalytic core APS55_04185 IPR012337 Ribonuclease H-like superfamily APS55_04185 IPR038965 Transposase InsF-like APS55_04190 IPR029056 Ribokinase-like APS55_04190 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase APS55_04190 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase APS55_04200 IPR018357 Hexapeptide transferase, conserved site APS55_04200 IPR011004 Trimeric LpxA-like superfamily APS55_04200 IPR001451 Hexapeptide repeat APS55_04200 IPR024688 Maltose/galactoside acetyltransferase APS55_04205 IPR023449 L-carnitine/gamma-butyrobetaine antiporter CaiT APS55_04205 IPR000060 BCCT transporter family APS55_04205 IPR018093 BCCT transporter, conserved site APS55_04210 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APS55_04210 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain APS55_04210 IPR036291 NAD(P)-binding domain superfamily APS55_04210 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APS55_04215 IPR036005 Creatinase/aminopeptidase-like APS55_04215 IPR000994 Peptidase M24 APS55_04215 IPR001714 Peptidase M24, methionine aminopeptidase APS55_04215 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 APS55_04225 IPR036259 MFS transporter superfamily APS55_04225 IPR011701 Major facilitator superfamily APS55_04225 IPR004638 Drug resistance transporter EmrB-like APS55_04225 IPR020846 Major facilitator superfamily domain APS55_04230 IPR024079 Metallopeptidase, catalytic domain superfamily APS55_04230 IPR000718 Peptidase M13 APS55_04230 IPR018497 Peptidase M13, C-terminal domain APS55_04230 IPR008753 Peptidase M13, N-terminal domain APS55_04230 IPR042089 Peptidase M13, domain 2 APS55_04235 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain APS55_04240 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_04240 IPR035906 MetI-like superfamily APS55_04245 IPR003439 ABC transporter-like APS55_04245 IPR017871 ABC transporter, conserved site APS55_04245 IPR003593 AAA+ ATPase domain APS55_04245 IPR000644 CBS domain APS55_04245 IPR005892 Glycine betaine transport ATP-binding subunit APS55_04245 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04260 IPR029058 Alpha/Beta hydrolase fold APS55_04260 IPR011659 WD40-like Beta Propeller APS55_04260 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain APS55_04260 IPR011042 Six-bladed beta-propeller, TolB-like APS55_04270 IPR004872 Lipoprotein NlpA family APS55_04275 IPR018449 NIL domain APS55_04275 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04275 IPR003439 ABC transporter-like APS55_04275 IPR026253 Methionine import ATP-binding protein MetN APS55_04275 IPR003593 AAA+ ATPase domain APS55_04275 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal APS55_04275 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain APS55_04275 IPR017871 ABC transporter, conserved site APS55_04280 IPR035906 MetI-like superfamily APS55_04280 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_04285 IPR011650 Peptidase M20, dimerisation domain APS55_04285 IPR002933 Peptidase M20 APS55_04285 IPR036264 Bacterial exopeptidase dimerisation domain APS55_04285 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site APS55_04285 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase APS55_04300 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site APS55_04300 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_04300 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_04300 IPR004839 Aminotransferase, class I/classII APS55_04300 IPR015424 Pyridoxal phosphate-dependent transferase APS55_04305 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily APS55_04305 IPR007566 Phosphoenolpyruvate carboxylase, archaeal-type APS55_04310 IPR011701 Major facilitator superfamily APS55_04310 IPR004638 Drug resistance transporter EmrB-like APS55_04310 IPR036259 MFS transporter superfamily APS55_04310 IPR020846 Major facilitator superfamily domain APS55_04320 IPR001653 Diaminopimelate epimerase, DapF APS55_04320 IPR018510 Diaminopimelate epimerase, active site APS55_04325 IPR027795 CASTOR, ACT domain APS55_04325 IPR018042 Aspartate kinase, conserved site APS55_04325 IPR001341 Aspartate kinase APS55_04325 IPR005260 Aspartate kinase, monofunctional class APS55_04325 IPR001048 Aspartate/glutamate/uridylate kinase APS55_04325 IPR035804 Aspartokinase 3, N-terminal APS55_04325 IPR036393 Acetylglutamate kinase-like superfamily APS55_04325 IPR002912 ACT domain APS55_04330 IPR002986 Diaminopimelate decarboxylase, LysA APS55_04330 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal APS55_04330 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site APS55_04330 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal APS55_04330 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site APS55_04330 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal APS55_04330 IPR000183 Ornithine/DAP/Arg decarboxylase APS55_04330 IPR029066 PLP-binding barrel APS55_04335 IPR001451 Hexapeptide repeat APS55_04335 IPR011004 Trimeric LpxA-like superfamily APS55_04335 IPR018357 Hexapeptide transferase, conserved site APS55_04335 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH APS55_04335 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal APS55_04340 IPR002933 Peptidase M20 APS55_04340 IPR036264 Bacterial exopeptidase dimerisation domain APS55_04340 IPR017439 Amidohydrolase APS55_04340 IPR023905 Acetyldiaminopimelate deacetylase APS55_04340 IPR011650 Peptidase M20, dimerisation domain APS55_04345 IPR002220 DapA-like APS55_04345 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA APS55_04345 IPR013785 Aldolase-type TIM barrel APS55_04345 IPR020625 Schiff base-forming aldolase, active site APS55_04350 IPR022663 Dihydrodipicolinate reductase, C-terminal APS55_04350 IPR036291 NAD(P)-binding domain superfamily APS55_04350 IPR023940 Dihydrodipicolinate reductase APS55_04350 IPR022664 Dihydrodipicolinate reductase, conserved site APS55_04350 IPR000846 Dihydrodipicolinate reductase, N-terminal APS55_04355 IPR004839 Aminotransferase, class I/classII APS55_04355 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site APS55_04355 IPR015424 Pyridoxal phosphate-dependent transferase APS55_04355 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_04355 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_04360 IPR000534 Semialdehyde dehydrogenase, NAD-binding APS55_04360 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site APS55_04360 IPR012080 Aspartate-semialdehyde dehydrogenase APS55_04360 IPR012280 Semialdehyde dehydrogenase, dimerisation domain APS55_04360 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type APS55_04360 IPR036291 NAD(P)-binding domain superfamily APS55_04365 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_04365 IPR036390 Winged helix DNA-binding domain superfamily APS55_04365 IPR002481 Ferric-uptake regulator APS55_04375 IPR036589 Homocysteine-binding domain superfamily APS55_04375 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT APS55_04375 IPR003726 Homocysteine-binding domain APS55_04380 IPR004840 Amino acid permease, conserved site APS55_04380 IPR004841 Amino acid permease/ SLC12A domain APS55_04385 IPR015943 WD40/YVTN repeat-like-containing domain superfamily APS55_04385 IPR019405 Lactonase, 7-bladed beta propeller APS55_04385 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily APS55_04400 IPR003797 DegV APS55_04405 IPR000425 Major intrinsic protein APS55_04405 IPR022357 Major intrinsic protein, conserved site APS55_04405 IPR023271 Aquaporin-like APS55_04415 IPR011701 Major facilitator superfamily APS55_04415 IPR020846 Major facilitator superfamily domain APS55_04415 IPR004638 Drug resistance transporter EmrB-like APS55_04415 IPR036259 MFS transporter superfamily APS55_04425 IPR017588 Uric acid permease UacT-like APS55_04425 IPR006043 Xanthine/uracil/vitamin C permease APS55_04425 IPR006042 Xanthine/uracil permease APS55_04430 IPR027475 Asparaginase/glutaminase, active site 2 APS55_04430 IPR037152 L-asparaginase, N-terminal domain superfamily APS55_04430 IPR004550 L-asparaginase, type II APS55_04430 IPR006034 Asparaginase/glutaminase-like APS55_04430 IPR020827 Asparaginase/glutaminase, active site 1 APS55_04430 IPR040919 Asparaginase/glutaminase, C-terminal APS55_04430 IPR027473 L-asparaginase, C-terminal APS55_04430 IPR027474 L-asparaginase, N-terminal APS55_04430 IPR036152 Asparaginase/glutaminase-like superfamily APS55_04440 IPR003439 ABC transporter-like APS55_04440 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04440 IPR022501 Gallidermin ABC transporter, ATP-binding subunit APS55_04440 IPR017871 ABC transporter, conserved site APS55_04440 IPR003593 AAA+ ATPase domain APS55_04455 IPR012337 Ribonuclease H-like superfamily APS55_04455 IPR001584 Integrase, catalytic core APS55_04455 IPR038965 Transposase InsF-like APS55_04455 IPR036397 Ribonuclease H superfamily APS55_04475 IPR003439 ABC transporter-like APS55_04475 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04475 IPR003593 AAA+ ATPase domain APS55_04475 IPR017871 ABC transporter, conserved site APS55_04480 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted APS55_04485 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A APS55_04485 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal APS55_04485 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily APS55_04485 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal APS55_04485 IPR012338 Beta-lactamase/transpeptidase-like APS55_04485 IPR015956 Penicillin-binding protein, C-terminal domain superfamily APS55_04495 IPR002293 Amino acid/polyamine transporter I APS55_04500 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_04500 IPR000847 Transcription regulator HTH, LysR APS55_04500 IPR005119 LysR, substrate-binding APS55_04500 IPR036390 Winged helix DNA-binding domain superfamily APS55_04510 IPR025948 HTH-like domain APS55_04510 IPR038965 Transposase InsF-like APS55_04510 IPR001584 Integrase, catalytic core APS55_04510 IPR012337 Ribonuclease H-like superfamily APS55_04510 IPR036397 Ribonuclease H superfamily APS55_04535 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site APS55_04535 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily APS55_04535 IPR013328 6-phosphogluconate dehydrogenase, domain 2 APS55_04535 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding APS55_04535 IPR015815 3-hydroxyisobutyrate dehydrogenase-related APS55_04535 IPR036291 NAD(P)-binding domain superfamily APS55_04535 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain APS55_04540 IPR003593 AAA+ ATPase domain APS55_04540 IPR026253 Methionine import ATP-binding protein MetN APS55_04540 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04540 IPR003439 ABC transporter-like APS55_04540 IPR017871 ABC transporter, conserved site APS55_04540 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal APS55_04540 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain APS55_04540 IPR018449 NIL domain APS55_04545 IPR001851 ABC transporter, permease APS55_04555 IPR002293 Amino acid/polyamine transporter I APS55_04560 IPR037523 Vicinal oxygen chelate (VOC) domain APS55_04560 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APS55_04560 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APS55_04565 IPR003439 ABC transporter-like APS55_04565 IPR032781 ABC-transporter extension domain APS55_04565 IPR003593 AAA+ ATPase domain APS55_04565 IPR017871 ABC transporter, conserved site APS55_04565 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04575 IPR005945 Proline-specific peptidase APS55_04575 IPR002410 Peptidase S33 APS55_04575 IPR000073 Alpha/beta hydrolase fold-1 APS55_04575 IPR029058 Alpha/Beta hydrolase fold APS55_04580 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain APS55_04580 IPR029058 Alpha/Beta hydrolase fold APS55_04580 IPR008979 Galactose-binding-like domain superfamily APS55_04580 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal APS55_04580 IPR008252 Peptidase S15, X-Pro dipeptidyl-peptidase APS55_04580 IPR015251 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain APS55_04580 IPR036313 PepX, N-terminal domain superfamily APS55_04585 IPR020476 NUDIX hydrolase APS55_04585 IPR015797 NUDIX hydrolase-like domain superfamily APS55_04585 IPR020084 NUDIX hydrolase, conserved site APS55_04585 IPR036412 HAD-like superfamily APS55_04585 IPR000086 NUDIX hydrolase domain APS55_04585 IPR023214 HAD superfamily APS55_04585 IPR006357 HAD-superfamily hydrolase, subfamily IIA APS55_04590 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04590 IPR020590 Guanylate kinase, conserved site APS55_04590 IPR017665 Guanylate kinase APS55_04590 IPR008144 Guanylate kinase-like domain APS55_04590 IPR008145 Guanylate kinase/L-type calcium channel beta subunit APS55_04605 IPR042108 GTPase HflX, N-terminal domain superfamily APS55_04605 IPR025121 GTPase HflX, N-terminal APS55_04605 IPR016496 GTPase HflX APS55_04605 IPR006073 GTP binding domain APS55_04605 IPR032305 GTP-binding protein, middle domain APS55_04605 IPR030394 HflX-type guanine nucleotide-binding (G) domain APS55_04605 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04610 IPR000914 Solute-binding protein family 5 domain APS55_04610 IPR030678 Peptide/nickel binding protein, MppA-type APS55_04610 IPR023765 Solute-binding protein family 5, conserved site APS55_04610 IPR039424 Solute-binding protein family 5 APS55_04615 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_04615 IPR035906 MetI-like superfamily APS55_04620 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APS55_04620 IPR035906 MetI-like superfamily APS55_04620 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_04625 IPR003439 ABC transporter-like APS55_04625 IPR003593 AAA+ ATPase domain APS55_04625 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal APS55_04625 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04625 IPR017871 ABC transporter, conserved site APS55_04630 IPR003593 AAA+ ATPase domain APS55_04630 IPR003439 ABC transporter-like APS55_04630 IPR017871 ABC transporter, conserved site APS55_04630 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal APS55_04630 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04635 IPR029033 Histidine phosphatase superfamily APS55_04635 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site APS55_04635 IPR023086 Phosphoglycerate mutase, GpmB, probable APS55_04635 IPR013078 Histidine phosphatase superfamily, clade-1 APS55_04640 IPR014016 UvrD-like helicase, ATP-binding domain APS55_04640 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04640 IPR000212 DNA helicase, UvrD/REP type APS55_04640 IPR027785 UvrD-like helicase C-terminal domain APS55_04645 IPR004566 Pantothenate kinase APS55_04645 IPR006083 Phosphoribulokinase/uridine kinase APS55_04645 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04650 IPR017926 Glutamine amidotransferase APS55_04650 IPR029062 Class I glutamine amidotransferase-like APS55_04650 IPR004739 GMP synthase, glutamine amidotransferase APS55_04650 IPR025777 GMP synthetase ATP pyrophosphatase domain APS55_04650 IPR022310 NAD/GMP synthase APS55_04650 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_04650 IPR001674 GMP synthase, C-terminal APS55_04650 IPR022955 GMP synthase APS55_04655 IPR016161 Aldehyde/histidinol dehydrogenase APS55_04655 IPR016163 Aldehyde dehydrogenase, C-terminal APS55_04655 IPR016162 Aldehyde dehydrogenase, N-terminal APS55_04655 IPR015590 Aldehyde dehydrogenase domain APS55_04655 IPR012134 Glutamate-5-semialdehyde dehydrogenase APS55_04655 IPR000965 GPR domain APS55_04655 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site APS55_04660 IPR001048 Aspartate/glutamate/uridylate kinase APS55_04660 IPR036393 Acetylglutamate kinase-like superfamily APS55_04660 IPR019797 Glutamate 5-kinase, conserved site APS55_04660 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase APS55_04660 IPR011529 Glutamate 5-kinase APS55_04660 IPR001057 Glutamate/acetylglutamate kinase APS55_04660 IPR041739 Glutamate-5-kinase domain APS55_04665 IPR000620 EamA domain APS55_04670 IPR020843 Polyketide synthase, enoylreductase domain APS55_04670 IPR011032 GroES-like superfamily APS55_04670 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site APS55_04670 IPR013154 Alcohol dehydrogenase, N-terminal APS55_04670 IPR013149 Alcohol dehydrogenase, C-terminal APS55_04670 IPR036291 NAD(P)-binding domain superfamily APS55_04675 IPR017871 ABC transporter, conserved site APS55_04675 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04675 IPR003593 AAA+ ATPase domain APS55_04675 IPR003439 ABC transporter-like APS55_04680 IPR036188 FAD/NAD(P)-binding domain superfamily APS55_04680 IPR011031 Multihaem cytochrome APS55_04680 IPR010960 Flavocytochrome c APS55_04680 IPR012286 Tetrahaem cytochrome domain APS55_04680 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain APS55_04680 IPR036280 Multiheme cytochrome superfamily APS55_04680 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily APS55_04690 IPR036398 Alpha carbonic anhydrase domain superfamily APS55_04690 IPR001148 Alpha carbonic anhydrase domain APS55_04690 IPR041891 Carbonic anhydrase, prokaryotic-like APS55_04690 IPR023561 Carbonic anhydrase, alpha-class APS55_04690 IPR018338 Carbonic anhydrase, alpha-class, conserved site APS55_04695 IPR002942 RNA-binding S4 domain APS55_04695 IPR020103 Pseudouridine synthase, catalytic domain superfamily APS55_04695 IPR006225 Pseudouridine synthase, RluC/RluD APS55_04695 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site APS55_04695 IPR006145 Pseudouridine synthase, RsuA/RluA APS55_04715 IPR002524 Cation efflux protein APS55_04715 IPR023500 Zinc transporter ZitB APS55_04715 IPR036837 Cation efflux protein, cytoplasmic domain superfamily APS55_04715 IPR027469 Cation efflux transmembrane domain superfamily APS55_04745 IPR002781 Transmembrane protein TauE-like APS55_04765 IPR004841 Amino acid permease/ SLC12A domain APS55_04770 IPR031314 Deoxynucleoside kinase domain APS55_04770 IPR002624 Deoxynucleoside kinase APS55_04770 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04775 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm APS55_04775 IPR006195 Aminoacyl-tRNA synthetase, class II APS55_04775 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) APS55_04775 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily APS55_04775 IPR033729 Serine-tRNA ligase catalytic core domain APS55_04775 IPR015866 Serine-tRNA synthetase, type1, N-terminal APS55_04775 IPR002317 Serine-tRNA ligase, type1 APS55_04820 IPR041902 CtsR, N-terminal domain superfamily APS55_04820 IPR008463 Transcriptional regulator CtsR APS55_04820 IPR040465 CtsR, N-terminal HTH domain APS55_04820 IPR041908 CtsR, C-terminal domain superfamily APS55_04820 IPR041473 CtsR, C-terminal dimerization domain APS55_04825 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04825 IPR041546 ClpA/ClpB, AAA lid domain APS55_04825 IPR028299 ClpA/B, conserved site 2 APS55_04825 IPR018368 ClpA/B, conserved site 1 APS55_04825 IPR001270 ClpA/B family APS55_04825 IPR004176 Clp, N-terminal APS55_04825 IPR036628 Clp, N-terminal domain superfamily APS55_04825 IPR019489 Clp ATPase, C-terminal APS55_04825 IPR003959 ATPase, AAA-type, core APS55_04825 IPR003593 AAA+ ATPase domain APS55_04825 IPR001943 UVR domain APS55_04830 IPR037034 RNA polymerase Rpb2, domain 2 superfamily APS55_04830 IPR007121 RNA polymerase, beta subunit, conserved site APS55_04830 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type APS55_04830 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain APS55_04830 IPR015712 DNA-directed RNA polymerase, subunit 2 APS55_04830 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain APS55_04830 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily APS55_04830 IPR007642 RNA polymerase Rpb2, domain 2 APS55_04830 IPR007644 RNA polymerase, beta subunit, protrusion APS55_04830 IPR007645 RNA polymerase Rpb2, domain 3 APS55_04830 IPR014724 RNA polymerase Rpb2, OB-fold APS55_04830 IPR007641 RNA polymerase Rpb2, domain 7 APS55_04835 IPR038120 RNA polymerase Rpb1, funnel domain superfamily APS55_04835 IPR007081 RNA polymerase Rpb1, domain 5 APS55_04835 IPR007083 RNA polymerase Rpb1, domain 4 APS55_04835 IPR042102 RNA polymerase Rpb1, domain 3 superfamily APS55_04835 IPR007066 RNA polymerase Rpb1, domain 3 APS55_04835 IPR000722 RNA polymerase, alpha subunit APS55_04835 IPR012754 DNA-directed RNA polymerase, subunit beta-prime APS55_04835 IPR007080 RNA polymerase Rpb1, domain 1 APS55_04835 IPR006592 RNA polymerase, N-terminal APS55_04845 IPR012340 Nucleic acid-binding, OB-fold APS55_04845 IPR005679 Ribosomal protein S12, bacterial-type APS55_04845 IPR006032 Ribosomal protein S12/S23 APS55_04850 IPR036823 Ribosomal protein S7 domain superfamily APS55_04850 IPR000235 Ribosomal protein S5/S7 APS55_04850 IPR005717 Ribosomal protein S7, bacterial/organellar-type APS55_04850 IPR020606 Ribosomal protein S7, conserved site APS55_04850 IPR023798 Ribosomal protein S7 domain APS55_04855 IPR004540 Translation elongation factor EFG/EF2 APS55_04855 IPR009022 Elongation factor G, domain III APS55_04855 IPR005517 Translation elongation factor EFG/EF2, domain IV APS55_04855 IPR009000 Translation protein, beta-barrel domain superfamily APS55_04855 IPR041095 Elongation Factor G, domain II APS55_04855 IPR005225 Small GTP-binding protein domain APS55_04855 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_04855 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_04855 IPR000795 Transcription factor, GTP-binding domain APS55_04855 IPR031157 Tr-type G domain, conserved site APS55_04855 IPR004161 Translation elongation factor EFTu-like, domain 2 APS55_04855 IPR000640 Elongation factor EFG, domain V-like APS55_04855 IPR035649 EFG, domain V APS55_04855 IPR035647 EF-G domain III/V-like APS55_04855 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04860 IPR001848 Ribosomal protein S10 APS55_04860 IPR018268 Ribosomal protein S10, conserved site APS55_04860 IPR027486 Ribosomal protein S10 domain APS55_04860 IPR036838 Ribosomal protein S10 domain superfamily APS55_04865 IPR000597 Ribosomal protein L3 APS55_04865 IPR019927 Ribosomal protein L3, bacterial/organelle-type APS55_04865 IPR009000 Translation protein, beta-barrel domain superfamily APS55_04870 IPR002136 Ribosomal protein L4/L1e APS55_04870 IPR013005 50S ribosomal protein uL4 APS55_04870 IPR023574 Ribosomal protein L4 domain superfamily APS55_04875 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily APS55_04875 IPR013025 Ribosomal protein L25/L23 APS55_04875 IPR012678 Ribosomal protein L23/L15e core domain superfamily APS55_04880 IPR008991 Translation protein SH3-like domain superfamily APS55_04880 IPR014726 Ribosomal protein L2, domain 3 APS55_04880 IPR022671 Ribosomal protein L2, conserved site APS55_04880 IPR022669 Ribosomal protein L2, C-terminal APS55_04880 IPR005880 Ribosomal protein L2, bacterial/organellar-type APS55_04880 IPR002171 Ribosomal protein L2 APS55_04880 IPR014722 Ribosomal protein L2, domain 2 APS55_04880 IPR012340 Nucleic acid-binding, OB-fold APS55_04880 IPR022666 Ribosomal Proteins L2, RNA binding domain APS55_04885 IPR002222 Ribosomal protein S19/S15 APS55_04885 IPR005732 Ribosomal protein S19, bacterial-type APS55_04885 IPR023575 Ribosomal protein S19, superfamily APS55_04885 IPR020934 Ribosomal protein S19 conserved site APS55_04890 IPR036394 Ribosomal protein L22/L17 superfamily APS55_04890 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type APS55_04890 IPR001063 Ribosomal protein L22/L17 APS55_04890 IPR018260 Ribosomal protein L22/L17, conserved site APS55_04895 IPR018280 Ribosomal protein S3, conserved site APS55_04895 IPR004087 K Homology domain APS55_04895 IPR036419 Ribosomal protein S3, C-terminal domain superfamily APS55_04895 IPR015946 K homology domain-like, alpha/beta APS55_04895 IPR004044 K Homology domain, type 2 APS55_04895 IPR009019 K homology domain superfamily, prokaryotic type APS55_04895 IPR005704 Ribosomal protein S3, bacterial-type APS55_04895 IPR001351 Ribosomal protein S3, C-terminal APS55_04900 IPR020798 Ribosomal protein L16, conserved site APS55_04900 IPR000114 Ribosomal protein L16 APS55_04900 IPR036920 Ribosomal protein L10e/L16 superfamily APS55_04900 IPR016180 Ribosomal protein L10e/L16 APS55_04905 IPR018254 Ribosomal protein L29, conserved site APS55_04905 IPR036049 Ribosomal protein L29/L35 superfamily APS55_04905 IPR001854 Ribosomal protein L29/L35 APS55_04910 IPR019979 Ribosomal protein S17, conserved site APS55_04910 IPR000266 Ribosomal protein S17/S11 APS55_04910 IPR019984 30S ribosomal protein S17 APS55_04910 IPR012340 Nucleic acid-binding, OB-fold APS55_04915 IPR019972 Ribosomal protein L14P, conserved site APS55_04915 IPR000218 Ribosomal protein L14P APS55_04915 IPR005745 Ribosomal protein L14P, bacterial-type APS55_04915 IPR036853 Ribosomal protein L14 superfamily APS55_04920 IPR005824 KOW APS55_04920 IPR041988 Ribosomal Protein L26/L24, KOW domain APS55_04920 IPR005825 Ribosomal protein L24/L26, conserved site APS55_04920 IPR014722 Ribosomal protein L2, domain 2 APS55_04920 IPR003256 Ribosomal protein L24 APS55_04920 IPR008991 Translation protein SH3-like domain superfamily APS55_04925 IPR022803 Ribosomal protein L5 domain superfamily APS55_04925 IPR031309 Ribosomal protein L5, C-terminal APS55_04925 IPR020930 Ribosomal protein L5, bacterial-type APS55_04925 IPR002132 Ribosomal protein L5 APS55_04925 IPR031310 Ribosomal protein L5, N-terminal APS55_04925 IPR020929 Ribosomal protein L5, conserved site APS55_04930 IPR001209 Ribosomal protein S14 APS55_04930 IPR018271 Ribosomal protein S14, conserved site APS55_04930 IPR023053 Ribosomal protein S14, type Z APS55_04935 IPR035987 Ribosomal protein S8 superfamily APS55_04935 IPR000630 Ribosomal protein S8 APS55_04940 IPR000702 Ribosomal protein L6 APS55_04940 IPR020040 Ribosomal protein L6, alpha-beta domain APS55_04940 IPR019906 Ribosomal protein L6, bacterial-type APS55_04940 IPR002358 Ribosomal protein L6, conserved site APS55_04940 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily APS55_04945 IPR004389 Ribosomal protein L18, bacterial-type APS55_04945 IPR005484 Ribosomal protein L18 APS55_04950 IPR018192 Ribosomal protein S5, N-terminal, conserved site APS55_04950 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_04950 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_04950 IPR005324 Ribosomal protein S5, C-terminal APS55_04950 IPR005712 Ribosomal protein S5, bacterial-type APS55_04950 IPR000851 Ribosomal protein S5 APS55_04950 IPR013810 Ribosomal protein S5, N-terminal APS55_04955 IPR005996 Ribosomal protein L30, bacterial-type APS55_04955 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain APS55_04955 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily APS55_04960 IPR001196 Ribosomal protein L15, conserved site APS55_04960 IPR021131 Ribosomal protein L18e/L15P APS55_04960 IPR005749 Ribosomal protein L15, bacterial-type APS55_04960 IPR030878 Ribosomal protein L15 APS55_04960 IPR036227 Ribosomal L18e/L15P superfamily APS55_04965 IPR023201 SecY domain superfamily APS55_04965 IPR030659 SecY conserved site APS55_04965 IPR002208 SecY/SEC61-alpha family APS55_04965 IPR026593 Protein translocase subunit SecY APS55_04970 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_04970 IPR007862 Adenylate kinase, active site lid domain APS55_04970 IPR000850 Adenylate kinase/UMP-CMP kinase APS55_04970 IPR006259 Adenylate kinase subfamily APS55_04970 IPR033690 Adenylate kinase, conserved site APS55_04975 IPR004368 Translation initiation factor IF-1 APS55_04975 IPR012340 Nucleic acid-binding, OB-fold APS55_04975 IPR006196 RNA-binding domain, S1, IF1 type APS55_04975 IPR022967 RNA-binding domain, S1 APS55_04980 IPR000473 Ribosomal protein L36 APS55_04980 IPR035977 Ribosomal protein L36 superfamily APS55_04985 IPR027437 30s ribosomal protein S13, C-terminal APS55_04985 IPR001892 Ribosomal protein S13 APS55_04985 IPR018269 Ribosomal protein S13, conserved site APS55_04985 IPR010979 Ribosomal protein S13-like, H2TH APS55_04985 IPR019980 Ribosomal protein S13, bacterial-type APS55_04990 IPR019981 Ribosomal protein S11, bacterial-type APS55_04990 IPR001971 Ribosomal protein S11 APS55_04990 IPR036967 Ribosomal protein S11 superfamily APS55_04990 IPR018102 Ribosomal S11, conserved site APS55_04995 IPR036603 RNA polymerase, RBP11-like subunit APS55_04995 IPR011773 DNA-directed RNA polymerase, alpha subunit APS55_04995 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type APS55_04995 IPR011260 RNA polymerase, alpha subunit, C-terminal APS55_04995 IPR036643 DNA-directed RNA polymerase, insert domain superfamily APS55_04995 IPR011262 DNA-directed RNA polymerase, insert domain APS55_05000 IPR000456 Ribosomal protein L17 APS55_05000 IPR036373 Ribosomal protein L17 superfamily APS55_05005 IPR015856 ABC transporter, CbiO/EcfA subunit APS55_05005 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 APS55_05005 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05005 IPR017871 ABC transporter, conserved site APS55_05005 IPR003593 AAA+ ATPase domain APS55_05005 IPR003439 ABC transporter-like APS55_05010 IPR015856 ABC transporter, CbiO/EcfA subunit APS55_05010 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 APS55_05010 IPR017871 ABC transporter, conserved site APS55_05010 IPR003439 ABC transporter-like APS55_05010 IPR003593 AAA+ ATPase domain APS55_05010 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05015 IPR024919 ECF transporter transmembrane protein EcfT APS55_05015 IPR003339 ABC/ECF transporter, transmembrane component APS55_05020 IPR020103 Pseudouridine synthase, catalytic domain superfamily APS55_05020 IPR001406 Pseudouridine synthase I, TruA APS55_05020 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain APS55_05020 IPR020095 Pseudouridine synthase I, TruA, C-terminal APS55_05025 IPR005822 Ribosomal protein L13 APS55_05025 IPR005823 Ribosomal protein L13, bacterial-type APS55_05025 IPR036899 Ribosomal protein L13 superfamily APS55_05030 IPR020574 Ribosomal protein S9, conserved site APS55_05030 IPR000754 Ribosomal protein S9 APS55_05030 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_05030 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_05030 IPR023035 Ribosomal protein S9, bacterial/plastid APS55_05035 IPR024529 ECF transporter, substrate-specific component APS55_05045 IPR025987 GW domain APS55_05045 IPR038200 GW domain superfamily APS55_05045 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain APS55_05050 IPR010079 Xanthine phosphoribosyltransferase APS55_05050 IPR029057 Phosphoribosyltransferase-like APS55_05050 IPR000836 Phosphoribosyltransferase domain APS55_05055 IPR000212 DNA helicase, UvrD/REP type APS55_05055 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05055 IPR005751 ATP-dependent DNA helicase PcrA APS55_05055 IPR034739 UvrD/AddA helicase, N-terminal APS55_05055 IPR014016 UvrD-like helicase, ATP-binding domain APS55_05055 IPR014017 UvrD-like DNA helicase, C-terminal APS55_05055 IPR013986 DExx box DNA helicase domain superfamily APS55_05060 IPR018239 NAD-dependent DNA ligase, active site APS55_05060 IPR004150 NAD-dependent DNA ligase, OB-fold APS55_05060 IPR012340 Nucleic acid-binding, OB-fold APS55_05060 IPR013840 NAD-dependent DNA ligase, N-terminal APS55_05060 IPR013839 NAD-dependent DNA ligase, adenylation APS55_05060 IPR001679 NAD-dependent DNA ligase APS55_05060 IPR033136 NAD-dependent DNA ligase, conserved site APS55_05060 IPR010994 RuvA domain 2-like APS55_05060 IPR041663 DisA/LigA, helix-hairpin-helix motif APS55_05060 IPR036420 BRCT domain superfamily APS55_05060 IPR001357 BRCT domain APS55_05060 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type APS55_05065 IPR011426 CamS sex pheromone cAM373 APS55_05070 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C APS55_05070 IPR003837 Glu-tRNAGln amidotransferase C subunit APS55_05075 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit APS55_05075 IPR000120 Amidase APS55_05075 IPR020556 Amidase, conserved site APS55_05075 IPR023631 Amidase signature domain APS55_05075 IPR036928 Amidase signature (AS) superfamily APS55_05080 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit APS55_05080 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E APS55_05080 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic APS55_05080 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like APS55_05080 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 APS55_05080 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 APS55_05080 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site APS55_05080 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain APS55_05080 IPR018027 Asn/Gln amidotransferase APS55_05085 IPR001206 Diacylglycerol kinase, catalytic domain APS55_05085 IPR005218 Diacylglycerol/lipid kinase APS55_05085 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal APS55_05085 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily APS55_05090 IPR030390 RNA methyltransferase TrmA, active site APS55_05090 IPR002792 TRAM domain APS55_05090 IPR010280 (Uracil-5)-methyltransferase family APS55_05090 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_05090 IPR012340 Nucleic acid-binding, OB-fold APS55_05090 IPR030391 RNA methyltransferase TrmA, conserved site APS55_05095 IPR041405 Type III R-M EcoP15I, C-terminal APS55_05095 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class APS55_05095 IPR002941 DNA methylase N-4/N-6 APS55_05095 IPR002052 DNA methylase, N-6 adenine-specific, conserved site APS55_05095 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_05100 IPR006935 Helicase/UvrB, N-terminal APS55_05100 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05100 IPR014883 VRR-NUC domain APS55_05125 IPR002293 Amino acid/polyamine transporter I APS55_05130 IPR018483 Carbohydrate kinase, FGGY, conserved site APS55_05130 IPR018484 Carbohydrate kinase, FGGY, N-terminal APS55_05130 IPR006002 Gluconate kinase APS55_05130 IPR000577 Carbohydrate kinase, FGGY APS55_05130 IPR018485 Carbohydrate kinase, FGGY, C-terminal APS55_05135 IPR036365 PGBD-like superfamily APS55_05135 IPR008270 Glycoside hydrolase, family 25, active site APS55_05135 IPR017853 Glycoside hydrolase superfamily APS55_05135 IPR036366 PGBD superfamily APS55_05135 IPR002053 Glycoside hydrolase, family 25 APS55_05135 IPR018077 Glycoside hydrolase, family 25 subgroup APS55_05135 IPR002477 Peptidoglycan binding-like APS55_05140 IPR011545 DEAD/DEAH box helicase domain APS55_05140 IPR014001 Helicase superfamily 1/2, ATP-binding domain APS55_05140 IPR014014 RNA helicase, DEAD-box type, Q motif APS55_05140 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05140 IPR001650 Helicase, C-terminal APS55_05150 IPR024370 PBP domain APS55_05150 IPR011862 Phosphate binding protein APS55_05155 IPR024370 PBP domain APS55_05155 IPR011862 Phosphate binding protein APS55_05160 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_05160 IPR035906 MetI-like superfamily APS55_05160 IPR011864 Phosphate ABC transporter, permease protein PstC APS55_05165 IPR035906 MetI-like superfamily APS55_05165 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_05165 IPR005672 Phosphate transport system permease protein PstA APS55_05170 IPR015850 ABC transporter, phosphate import, PstB APS55_05170 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05170 IPR005670 Phosphate transport system permease protein 1 APS55_05170 IPR003439 ABC transporter-like APS55_05170 IPR017871 ABC transporter, conserved site APS55_05170 IPR003593 AAA+ ATPase domain APS55_05175 IPR005670 Phosphate transport system permease protein 1 APS55_05175 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05175 IPR015850 ABC transporter, phosphate import, PstB APS55_05175 IPR003439 ABC transporter-like APS55_05175 IPR003593 AAA+ ATPase domain APS55_05175 IPR017871 ABC transporter, conserved site APS55_05180 IPR026022 PhoU domain APS55_05180 IPR038078 PhoU-like domain superfamily APS55_05180 IPR028366 Phosphate transport system protein PhoU APS55_05185 IPR001867 OmpR/PhoB-type DNA-binding domain APS55_05185 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_05185 IPR039420 Transcriptional regulatory protein WalR-like APS55_05185 IPR001789 Signal transduction response regulator, receiver domain APS55_05185 IPR016032 Signal transduction response regulator, C-terminal effector APS55_05185 IPR011006 CheY-like superfamily APS55_05190 IPR010651 Sugar transport protein APS55_05195 IPR003474 Gluconate transporter APS55_05200 IPR007267 GtrA-like protein APS55_05205 IPR001173 Glycosyltransferase 2-like APS55_05205 IPR029044 Nucleotide-diphospho-sugar transferases APS55_05210 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like APS55_05210 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain APS55_05215 IPR017039 Virulence factor BrkB APS55_05220 IPR001094 Flavodoxin-like APS55_05220 IPR010087 Flavodoxin, short chain APS55_05220 IPR029039 Flavoprotein-like superfamily APS55_05220 IPR008254 Flavodoxin/nitric oxide synthase APS55_05220 IPR001226 Flavodoxin, conserved site APS55_05225 IPR003783 Regulatory protein RecX APS55_05225 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_05230 IPR002549 Transmembrane protein TqsA-like APS55_05235 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_05235 IPR006409 Glycerol-3-phosphate cytidylyltransferase APS55_05235 IPR004821 Cytidyltransferase-like domain APS55_05240 IPR009000 Translation protein, beta-barrel domain superfamily APS55_05240 IPR005225 Small GTP-binding protein domain APS55_05240 IPR041732 Peptide chain release factor 3, GTP-binding domain APS55_05240 IPR032090 Peptide chain release factor 3, C-terminal APS55_05240 IPR000795 Transcription factor, GTP-binding domain APS55_05240 IPR004548 Peptide chain release factor 3 APS55_05240 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05240 IPR031157 Tr-type G domain, conserved site APS55_05240 IPR035647 EF-G domain III/V-like APS55_05240 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily APS55_05240 IPR004161 Translation elongation factor EFTu-like, domain 2 APS55_05250 IPR036876 UVR domain superfamily APS55_05250 IPR001943 UVR domain APS55_05250 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05250 IPR001270 ClpA/B family APS55_05250 IPR003959 ATPase, AAA-type, core APS55_05250 IPR041546 ClpA/ClpB, AAA lid domain APS55_05250 IPR018368 ClpA/B, conserved site 1 APS55_05250 IPR003593 AAA+ ATPase domain APS55_05250 IPR019489 Clp ATPase, C-terminal APS55_05250 IPR028299 ClpA/B, conserved site 2 APS55_05255 IPR002114 Phosphotransferase system, HPr serine phosphorylation site APS55_05255 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site APS55_05255 IPR035895 HPr-like superfamily APS55_05255 IPR000032 Phosphocarrier protein HPr-like APS55_05260 IPR001296 Glycosyl transferase, family 1 APS55_05260 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain APS55_05265 IPR001296 Glycosyl transferase, family 1 APS55_05265 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain APS55_05275 IPR000917 Sulfatase, N-terminal APS55_05275 IPR012160 Lipoteichoic acid synthase-like APS55_05275 IPR017850 Alkaline-phosphatase-like, core domain superfamily APS55_05410 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_05410 IPR014071 Copper transport repressor CopY/TcrY APS55_05410 IPR005650 BlaI transcriptional regulatory family APS55_05410 IPR036390 Winged helix DNA-binding domain superfamily APS55_05415 IPR001757 P-type ATPase APS55_05415 IPR023298 P-type ATPase, transmembrane domain superfamily APS55_05415 IPR023214 HAD superfamily APS55_05415 IPR027256 P-type ATPase, subfamily IB APS55_05415 IPR018303 P-type ATPase, phosphorylation site APS55_05415 IPR036412 HAD-like superfamily APS55_05415 IPR023299 P-type ATPase, cytoplasmic domain N APS55_05415 IPR008250 P-type ATPase, A domain superfamily APS55_05425 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APS55_05425 IPR001279 Metallo-beta-lactamase APS55_05430 IPR008681 Negative regulator of genetic competence, MecA APS55_05430 IPR038471 MecA, C-terminal domain superfamily APS55_05440 IPR013647 Oligopeptidase F, N-terminal domain APS55_05440 IPR042088 Oligoendopeptidase F, C-terminal domain APS55_05440 IPR001567 Peptidase M3A/M3B catalytic domain APS55_05440 IPR004438 Peptidase M3B, oligoendopeptidase F APS55_05450 IPR007685 RelA/SpoT APS55_05455 IPR002504 NAD kinase APS55_05455 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily APS55_05455 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal APS55_05455 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal APS55_05460 IPR020103 Pseudouridine synthase, catalytic domain superfamily APS55_05460 IPR006145 Pseudouridine synthase, RsuA/RluA APS55_05460 IPR002942 RNA-binding S4 domain APS55_05460 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site APS55_05460 IPR006225 Pseudouridine synthase, RluC/RluD APS55_05465 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted APS55_05465 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_05465 IPR013216 Methyltransferase type 11 APS55_05470 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APS55_05470 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase APS55_05470 IPR029028 Alpha/beta knot methyltransferases APS55_05470 IPR001537 tRNA/rRNA methyltransferase, SpoU type APS55_05475 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05475 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_05475 IPR018541 FtsK gamma domain APS55_05475 IPR002543 FtsK domain APS55_05475 IPR041027 FtsK alpha domain APS55_05475 IPR003593 AAA+ ATPase domain APS55_05475 IPR036390 Winged helix DNA-binding domain superfamily APS55_05480 IPR020603 MraZ domain APS55_05480 IPR038619 MraZ superfamily APS55_05480 IPR035642 MraZ, N-terminal APS55_05480 IPR035644 MraZ, C-terminal APS55_05480 IPR037914 SpoVT-AbrB domain superfamily APS55_05480 IPR003444 Transcriptional regulator MraZ APS55_05480 IPR007159 SpoVT-AbrB domain APS55_05485 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_05485 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily APS55_05485 IPR002903 Ribosomal RNA small subunit methyltransferase H APS55_05495 IPR012338 Beta-lactamase/transpeptidase-like APS55_05495 IPR005311 Penicillin-binding protein, dimerisation domain APS55_05495 IPR036138 Penicillin-binding protein, dimerisation domain superfamily APS55_05495 IPR001460 Penicillin-binding protein, transpeptidase APS55_05495 IPR005543 PASTA domain APS55_05500 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase APS55_05500 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site APS55_05500 IPR000715 Glycosyl transferase, family 4 APS55_05505 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain APS55_05505 IPR018109 Folylpolyglutamate synthetase, conserved site APS55_05505 IPR036565 Mur-like, catalytic domain superfamily APS55_05505 IPR004101 Mur ligase, C-terminal APS55_05505 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase APS55_05505 IPR013221 Mur ligase, central APS55_05505 IPR036615 Mur ligase, C-terminal domain superfamily APS55_05510 IPR004276 Glycosyltransferase family 28, N-terminal domain APS55_05510 IPR007235 Glycosyl transferase, family 28, C-terminal APS55_05510 IPR006009 N-acetylglucosaminyltransferase, MurG APS55_05515 IPR026580 Cell division protein DivIB APS55_05515 IPR013685 POTRA domain, FtsQ-type APS55_05515 IPR034746 POTRA domain APS55_05515 IPR005548 Cell division protein FtsQ/DivIB APS55_05520 IPR020823 Cell division protein FtsA APS55_05520 IPR021873 Cell division protein FtsA, C-terminal APS55_05520 IPR003494 SHS2 domain inserted in FtsA APS55_05525 IPR020805 Cell division protein FtsZ, conserved site APS55_05525 IPR024757 Cell division protein FtsZ, C-terminal APS55_05525 IPR036525 Tubulin/FtsZ, GTPase domain superfamily APS55_05525 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain APS55_05525 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily APS55_05525 IPR003008 Tubulin/FtsZ, GTPase domain APS55_05525 IPR008280 Tubulin/FtsZ, C-terminal APS55_05525 IPR000158 Cell division protein FtsZ APS55_05530 IPR007561 Cell division protein SepF/SepF-related APS55_05530 IPR038594 SepF-like superfamily APS55_05530 IPR023052 Cell division protein SepF APS55_05540 IPR007793 DivIVA family APS55_05540 IPR019933 DivIVA domain APS55_05545 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_05545 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding APS55_05545 IPR023585 Isoleucine-tRNA ligase, type 1 APS55_05545 IPR002301 Isoleucine-tRNA ligase APS55_05545 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain APS55_05545 IPR002300 Aminoacyl-tRNA synthetase, class Ia APS55_05545 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain APS55_05545 IPR010663 Zinc finger, FPG/IleRS-type APS55_05545 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site APS55_05545 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding APS55_05550 IPR012156 Cold shock, CspA APS55_05550 IPR011129 Cold shock domain APS55_05550 IPR019844 Cold-shock (CSD) domain APS55_05550 IPR002059 Cold-shock protein, DNA-binding APS55_05550 IPR012340 Nucleic acid-binding, OB-fold APS55_05555 IPR020476 NUDIX hydrolase APS55_05555 IPR000086 NUDIX hydrolase domain APS55_05555 IPR020084 NUDIX hydrolase, conserved site APS55_05555 IPR015797 NUDIX hydrolase-like domain superfamily APS55_05565 IPR010049 MTA/SAH nucleosidase APS55_05565 IPR000845 Nucleoside phosphorylase domain APS55_05565 IPR035994 Nucleoside phosphorylase superfamily APS55_05570 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_05570 IPR015424 Pyridoxal phosphate-dependent transferase APS55_05570 IPR016454 Cysteine desulfurase APS55_05570 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APS55_05570 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_05570 IPR000192 Aminotransferase class V domain APS55_05580 IPR023382 Adenine nucleotide alpha hydrolase-like domains APS55_05580 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_05580 IPR004506 tRNA-specific 2-thiouridylase APS55_05595 IPR006345 RecD-like DNA helicase APS55_05595 IPR003593 AAA+ ATPase domain APS55_05595 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05595 IPR029493 RecD helicase-like helix-hairpin-helix domain APS55_05595 IPR041451 RecD-like DNA helicase, SH3 domain APS55_05595 IPR027785 UvrD-like helicase C-terminal domain APS55_05600 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type APS55_05600 IPR000836 Phosphoribosyltransferase domain APS55_05600 IPR029057 Phosphoribosyltransferase-like APS55_05600 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain APS55_05600 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site APS55_05600 IPR005946 Ribose-phosphate pyrophosphokinase APS55_05605 IPR023210 NADP-dependent oxidoreductase domain APS55_05605 IPR036812 NADP-dependent oxidoreductase domain superfamily APS55_05610 IPR022461 Arginine/ornithine antiporter APS55_05610 IPR002293 Amino acid/polyamine transporter I APS55_05610 IPR004754 Amino acid antiporter APS55_05615 IPR001206 Diacylglycerol kinase, catalytic domain APS55_05615 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily APS55_05615 IPR005218 Diacylglycerol/lipid kinase APS55_05615 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal APS55_05620 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APS55_05620 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain APS55_05620 IPR004613 Ribonuclease J APS55_05620 IPR042173 Ribonuclease J, domain 2 APS55_05620 IPR030854 Ribonuclease J, bacteria APS55_05620 IPR041636 Ribonuclease J, C-terminal APS55_05620 IPR001279 Metallo-beta-lactamase APS55_05620 IPR001587 Ribonuclease J, conserved site APS55_05625 IPR009907 Protein of unknown function DUF1447 APS55_05635 IPR023635 Peptide deformylase APS55_05635 IPR036821 Peptide deformylase superfamily APS55_05640 IPR001557 L-lactate/malate dehydrogenase APS55_05640 IPR036291 NAD(P)-binding domain superfamily APS55_05640 IPR001236 Lactate/malate dehydrogenase, N-terminal APS55_05640 IPR022383 Lactate/malate dehydrogenase, C-terminal APS55_05640 IPR018177 L-lactate dehydrogenase, active site APS55_05640 IPR011304 L-lactate dehydrogenase APS55_05640 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal APS55_05645 IPR023324 BH2638-like superfamily APS55_05645 IPR007920 Protein of unknown function UPF0223 APS55_05650 IPR000760 Inositol monophosphatase-like APS55_05650 IPR020550 Inositol monophosphatase, conserved site APS55_05650 IPR020583 Inositol monophosphatase, metal-binding site APS55_05655 IPR006298 GTP-binding protein TypA APS55_05655 IPR005225 Small GTP-binding protein domain APS55_05655 IPR009000 Translation protein, beta-barrel domain superfamily APS55_05655 IPR000795 Transcription factor, GTP-binding domain APS55_05655 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05655 IPR042116 GTP-binding protein TypA/BipA, C-terminal APS55_05655 IPR004161 Translation elongation factor EFTu-like, domain 2 APS55_05655 IPR000640 Elongation factor EFG, domain V-like APS55_05655 IPR035647 EF-G domain III/V-like APS55_05655 IPR041095 Elongation Factor G, domain II APS55_05655 IPR035651 BipA, domain V APS55_05655 IPR031157 Tr-type G domain, conserved site APS55_05660 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site APS55_05660 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA APS55_05665 IPR016979 Protein of unknown function DUF2129 APS55_05670 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_05670 IPR004398 RNA methyltransferase, RsmD APS55_05675 IPR004821 Cytidyltransferase-like domain APS55_05675 IPR001980 Phosphopantetheine adenylyltransferase APS55_05675 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_05680 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_05680 IPR027065 Lon protease APS55_05680 IPR001478 PDZ domain APS55_05680 IPR036034 PDZ superfamily APS55_05680 IPR008269 Peptidase S16, Lon proteolytic domain APS55_05680 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_05680 IPR039381 Endopeptidase La, PDZ domain APS55_05690 IPR013404 Competence operon E, ComEB APS55_05690 IPR016193 Cytidine deaminase-like APS55_05690 IPR002125 Cytidine and deoxycytidylate deaminase domain APS55_05690 IPR035105 Deoxycytidylate deaminase domain APS55_05690 IPR016192 APOBEC/CMP deaminase, zinc-binding APS55_05690 IPR015517 Deoxycytidylate deaminase-related APS55_05695 IPR035681 ComA-like, MBL domain APS55_05695 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APS55_05695 IPR001279 Metallo-beta-lactamase APS55_05695 IPR025405 Domain of unknown function DUF4131 APS55_05695 IPR004797 Competence protein ComEC/Rec2 APS55_05695 IPR004477 ComEC/Rec2-related protein APS55_05700 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05700 IPR005790 DNA polymerase III, delta subunit APS55_05700 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal APS55_05700 IPR010372 DNA polymerase III delta, N-terminal APS55_05705 IPR036510 Ribosomal protein S20 superfamily APS55_05705 IPR002583 Ribosomal protein S20 APS55_05710 IPR009068 S15/NS1, RNA-binding APS55_05710 IPR005290 Ribosomal protein S15, bacterial-type APS55_05710 IPR000589 Ribosomal protein S15 APS55_05715 IPR041636 Ribonuclease J, C-terminal APS55_05715 IPR030854 Ribonuclease J, bacteria APS55_05715 IPR042173 Ribonuclease J, domain 2 APS55_05715 IPR004613 Ribonuclease J APS55_05715 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain APS55_05715 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APS55_05715 IPR001279 Metallo-beta-lactamase APS55_05725 IPR009000 Translation protein, beta-barrel domain superfamily APS55_05725 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05725 IPR005225 Small GTP-binding protein domain APS55_05725 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle APS55_05725 IPR000795 Transcription factor, GTP-binding domain APS55_05725 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal APS55_05725 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal APS55_05725 IPR033720 Elongation factor Tu, domain 2 APS55_05725 IPR004161 Translation elongation factor EFTu-like, domain 2 APS55_05725 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain APS55_05725 IPR031157 Tr-type G domain, conserved site APS55_05730 IPR036611 Trigger factor ribosome-binding domain superfamily APS55_05730 IPR027304 Trigger factor/SurA domain superfamily APS55_05730 IPR008881 Trigger factor, ribosome-binding, bacterial APS55_05730 IPR037041 Trigger factor, C-terminal domain superfamily APS55_05730 IPR008880 Trigger factor, C-terminal APS55_05730 IPR005215 Trigger factor APS55_05730 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain APS55_05735 IPR003593 AAA+ ATPase domain APS55_05735 IPR038366 Zinc finger, ClpX C4-type superfamily APS55_05735 IPR003959 ATPase, AAA-type, core APS55_05735 IPR010603 Zinc finger, ClpX C4-type APS55_05735 IPR004487 Clp protease, ATP-binding subunit ClpX APS55_05735 IPR019489 Clp ATPase, C-terminal APS55_05735 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05740 IPR030393 EngB-type guanine nucleotide-binding (G) domain APS55_05740 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC APS55_05740 IPR006073 GTP binding domain APS55_05740 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05740 IPR005225 Small GTP-binding protein domain APS55_05750 IPR038476 UvrC homology region 2 superfamily APS55_05750 IPR001162 UvrC family homology region APS55_05750 IPR036876 UVR domain superfamily APS55_05750 IPR001943 UVR domain APS55_05750 IPR000305 GIY-YIG endonuclease APS55_05750 IPR010994 RuvA domain 2-like APS55_05750 IPR004791 UvrABC system, subunit C APS55_05750 IPR035901 GIY-YIG endonuclease superfamily APS55_05755 IPR031167 OBG-type guanine nucleotide-binding (G) domain APS55_05755 IPR006169 GTP1/OBG domain APS55_05755 IPR035101 GTP-binding protein, Obg-type APS55_05755 IPR014100 GTP-binding protein Obg/CgtA APS55_05755 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily APS55_05755 IPR006074 GTP1/OBG, conserved site APS55_05755 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05755 IPR015349 GTP-binding protein OBG, C-terminal APS55_05755 IPR006073 GTP binding domain APS55_05755 IPR036726 GTP1/OBG domain superfamily APS55_05760 IPR001279 Metallo-beta-lactamase APS55_05760 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APS55_05760 IPR013471 Ribonuclease Z/BN APS55_05765 IPR041122 RecJ, OB domain APS55_05765 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal APS55_05765 IPR038763 DHH phosphoesterase superfamily APS55_05765 IPR003156 DHHA1 domain APS55_05765 IPR004610 Bacterial RecJ exonuclease APS55_05765 IPR001667 DDH domain APS55_05770 IPR005764 Adenine phosphoribosyl transferase APS55_05770 IPR000836 Phosphoribosyltransferase domain APS55_05770 IPR029057 Phosphoribosyltransferase-like APS55_05790 IPR016039 Thiolase-like APS55_05790 IPR011554 Hydroxymethylglutaryl-CoA synthase, prokaryotic APS55_05790 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal APS55_05790 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain APS55_05800 IPR011991 ArsR-like helix-turn-helix domain APS55_05800 IPR006200 Transcription regulator LexA APS55_05800 IPR036286 LexA/Signal peptidase-like superfamily APS55_05800 IPR006199 LexA repressor, DNA-binding domain APS55_05800 IPR006197 Peptidase S24, LexA-like APS55_05800 IPR015927 Peptidase S24/S26A/S26B/S26C APS55_05800 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_05800 IPR036390 Winged helix DNA-binding domain superfamily APS55_05800 IPR039418 LexA-like APS55_05805 IPR009242 Protein of unknown function DUF896 APS55_05810 IPR005359 Protein with unknown function UPF0154 APS55_05815 IPR002123 Phospholipid/glycerol acyltransferase APS55_05820 IPR007848 Methyltransferase small domain APS55_05820 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_05825 IPR000305 GIY-YIG endonuclease APS55_05825 IPR035901 GIY-YIG endonuclease superfamily APS55_05830 IPR036291 NAD(P)-binding domain superfamily APS55_05830 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain APS55_05830 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 APS55_05830 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APS55_05830 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APS55_05835 IPR018130 Ribosomal protein S2, conserved site APS55_05835 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily APS55_05835 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid APS55_05835 IPR001865 Ribosomal protein S2 APS55_05840 IPR009060 UBA-like superfamily APS55_05840 IPR001816 Translation elongation factor EFTs/EF1B APS55_05840 IPR018101 Translation elongation factor Ts, conserved site APS55_05840 IPR036402 Elongation factor Ts, dimerisation domain superfamily APS55_05840 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation APS55_05845 IPR015963 Uridylate kinase, bacteria APS55_05845 IPR011817 Uridylate kinase APS55_05845 IPR036393 Acetylglutamate kinase-like superfamily APS55_05845 IPR001048 Aspartate/glutamate/uridylate kinase APS55_05850 IPR036191 RRF superfamily APS55_05850 IPR023584 Ribosome recycling factor domain APS55_05850 IPR002661 Ribosome recycling factor APS55_05860 IPR001441 Decaprenyl diphosphate synthase-like APS55_05860 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site APS55_05860 IPR036424 Decaprenyl diphosphate synthase-like superfamily APS55_05865 IPR000374 Phosphatidate cytidylyltransferase APS55_05870 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase APS55_05870 IPR001478 PDZ domain APS55_05870 IPR008915 Peptidase M50 APS55_05870 IPR036034 PDZ superfamily APS55_05870 IPR041489 PDZ domain 6 APS55_05875 IPR033730 Prokaryote proline-tRNA ligase core domain APS55_05875 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily APS55_05875 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) APS55_05875 IPR006195 Aminoacyl-tRNA synthetase, class II APS55_05875 IPR004154 Anticodon-binding APS55_05875 IPR036621 Anticodon-binding domain superfamily APS55_05875 IPR002316 Proline-tRNA ligase, class IIa APS55_05875 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type APS55_05875 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 APS55_05875 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain APS55_05880 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain APS55_05880 IPR036397 Ribonuclease H superfamily APS55_05880 IPR040982 DNA polymerase III alpha subunit finger domain APS55_05880 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type APS55_05880 IPR003141 Polymerase/histidinol phosphatase, N-terminal APS55_05880 IPR004013 PHP domain APS55_05880 IPR012340 Nucleic acid-binding, OB-fold APS55_05880 IPR013520 Exonuclease, RNase T/DNA polymerase III APS55_05880 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain APS55_05880 IPR029460 DNA polymerase, helix-hairpin-helix motif APS55_05880 IPR028112 DNA polymerase III polC-type, N-terminal domain I APS55_05880 IPR024754 DNA polymerase III polC-like, N-terminal domain II APS55_05880 IPR012337 Ribonuclease H-like superfamily APS55_05885 IPR028998 Ribosome maturation factor RimP, C-terminal APS55_05885 IPR035956 RimP, N-terminal domain superfamily APS55_05885 IPR028989 Ribosome maturation factor RimP, N-terminal APS55_05885 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily APS55_05885 IPR003728 Ribosome maturation factor RimP APS55_05890 IPR004087 K Homology domain APS55_05890 IPR012340 Nucleic acid-binding, OB-fold APS55_05890 IPR010213 Transcription termination factor NusA APS55_05890 IPR013735 Transcription factor NusA, N-terminal APS55_05890 IPR003029 S1 domain APS55_05890 IPR022967 RNA-binding domain, S1 APS55_05890 IPR015946 K homology domain-like, alpha/beta APS55_05890 IPR025249 KH domain, NusA-like APS55_05890 IPR009019 K homology domain superfamily, prokaryotic type APS55_05890 IPR036555 NusA, N-terminal domain superfamily APS55_05890 IPR030842 Transcription termination/antitermination protein NusA, bacterial APS55_05895 IPR037465 Uncharacterized protein YlxR APS55_05895 IPR007393 Domain of unknown function DUF448 APS55_05895 IPR035931 YlxR-like superfamily APS55_05900 IPR039109 Ribosomal protein L30/YlxQ APS55_05900 IPR029064 50S ribosomal protein L30e-like APS55_05900 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 APS55_05900 IPR039107 Ribosomal protein YlxQ APS55_05905 IPR006847 Translation initiation factor IF-2, N-terminal APS55_05905 IPR009000 Translation protein, beta-barrel domain superfamily APS55_05905 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05905 IPR005225 Small GTP-binding protein domain APS55_05905 IPR000795 Transcription factor, GTP-binding domain APS55_05905 IPR000178 Translation initiation factor aIF-2, bacterial-like APS55_05905 IPR015760 Translation initiation factor IF- 2 APS55_05905 IPR036925 Translation initiation factor IF-2, domain 3 superfamily APS55_05905 IPR023115 Translation initiation factor IF- 2, domain 3 APS55_05910 IPR020053 Ribosome-binding factor A, conserved site APS55_05910 IPR023799 Ribosome-binding factor A domain superfamily APS55_05910 IPR000238 Ribosome-binding factor A APS55_05910 IPR015946 K homology domain-like, alpha/beta APS55_05915 IPR032819 tRNA pseudouridylate synthase B, C-terminal APS55_05915 IPR002501 Pseudouridine synthase II, N-terminal APS55_05915 IPR020103 Pseudouridine synthase, catalytic domain superfamily APS55_05915 IPR014780 tRNA pseudouridine synthase II, TruB APS55_05920 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_05920 IPR023468 Riboflavin kinase APS55_05920 IPR015864 FAD synthetase APS55_05920 IPR004821 Cytidyltransferase-like domain APS55_05920 IPR023465 Riboflavin kinase domain superfamily APS55_05920 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic APS55_05920 IPR002606 Riboflavin kinase, bacterial APS55_05925 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily APS55_05925 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain APS55_05925 IPR036390 Winged helix DNA-binding domain superfamily APS55_05925 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_05925 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal APS55_05925 IPR029016 GAF-like domain superfamily APS55_05925 IPR002571 Heat-inducible transcription repressor HrcA APS55_05930 IPR013805 GrpE nucleotide exchange factor, coiled-coil APS55_05930 IPR000740 GrpE nucleotide exchange factor APS55_05930 IPR009012 GrpE nucleotide exchange factor, head APS55_05935 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily APS55_05935 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily APS55_05935 IPR012725 Chaperone DnaK APS55_05935 IPR013126 Heat shock protein 70 family APS55_05935 IPR018181 Heat shock protein 70, conserved site APS55_05940 IPR036869 Chaperone J-domain superfamily APS55_05940 IPR012724 Chaperone DnaJ APS55_05940 IPR008971 HSP40/DnaJ peptide-binding APS55_05940 IPR002939 Chaperone DnaJ, C-terminal APS55_05940 IPR001623 DnaJ domain APS55_05940 IPR018253 DnaJ domain, conserved site APS55_05940 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily APS55_05940 IPR001305 Heat shock protein DnaJ, cysteine-rich domain APS55_05945 IPR009000 Translation protein, beta-barrel domain superfamily APS55_05945 IPR000795 Transcription factor, GTP-binding domain APS55_05945 IPR000640 Elongation factor EFG, domain V-like APS55_05945 IPR035647 EF-G domain III/V-like APS55_05945 IPR006297 Elongation factor 4 APS55_05945 IPR005225 Small GTP-binding protein domain APS55_05945 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_05945 IPR035654 Elongation factor 4, domain IV APS55_05945 IPR013842 GTP-binding protein LepA, C-terminal APS55_05945 IPR038363 LepA, C-terminal domain superfamily APS55_05945 IPR004161 Translation elongation factor EFTu-like, domain 2 APS55_05950 IPR029935 Uracil permease APS55_05950 IPR006043 Xanthine/uracil/vitamin C permease APS55_05950 IPR006042 Xanthine/uracil permease APS55_05955 IPR007554 CDP-glycerol glycerophosphotransferase APS55_05970 IPR004498 Ribosomal protein L11 methyltransferase APS55_05970 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_05975 IPR015947 PUA-like superfamily APS55_05975 IPR029028 Alpha/beta knot methyltransferases APS55_05975 IPR006700 Ribosomal RNA small subunit methyltransferase E APS55_05975 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APS55_05980 IPR004095 TGS APS55_05980 IPR012676 TGS-like APS55_05980 IPR002912 ACT domain APS55_05980 IPR012675 Beta-grasp domain superfamily APS55_05980 IPR003607 HD/PDEase domain APS55_05980 IPR033655 RelA, TGS domain APS55_05980 IPR007685 RelA/SpoT APS55_05980 IPR004811 RelA/SpoT family APS55_05985 IPR003732 D-aminoacyl-tRNA deacylase DTD APS55_05985 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily APS55_05990 IPR036412 HAD-like superfamily APS55_05990 IPR006439 HAD hydrolase, subfamily IA APS55_05990 IPR041492 Haloacid dehalogenase-like hydrolase APS55_05990 IPR023214 HAD superfamily APS55_05990 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APS55_05990 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic APS55_05990 IPR037512 Phosphoglycolate phosphatase, prokaryotic APS55_05995 IPR016477 Fructosamine/Ketosamine-3-kinase APS55_05995 IPR011009 Protein kinase-like domain superfamily APS55_06000 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain APS55_06000 IPR015807 Histidine-tRNA ligase APS55_06000 IPR033656 Histidyl-anticodon-binding APS55_06000 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit APS55_06000 IPR006195 Aminoacyl-tRNA synthetase, class II APS55_06000 IPR004154 Anticodon-binding APS55_06000 IPR036621 Anticodon-binding domain superfamily APS55_06005 IPR029351 GAD domain APS55_06005 IPR004115 GAD-like domain superfamily APS55_06005 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb APS55_06005 IPR012340 Nucleic acid-binding, OB-fold APS55_06005 IPR004524 Aspartate-tRNA ligase, type 1 APS55_06005 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) APS55_06005 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type APS55_06005 IPR006195 Aminoacyl-tRNA synthetase, class II APS55_06010 IPR012337 Ribonuclease H-like superfamily APS55_06010 IPR036397 Ribonuclease H superfamily APS55_06010 IPR001584 Integrase, catalytic core APS55_06010 IPR038965 Transposase InsF-like APS55_06010 IPR025948 HTH-like domain APS55_06020 IPR019264 Domain of unknown function DUF2179 APS55_06020 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal APS55_06020 IPR003740 Uncharacterised membrane protein YitT APS55_06025 IPR007554 CDP-glycerol glycerophosphotransferase APS55_06030 IPR013525 ABC-2 type transporter APS55_06030 IPR000412 ABC-2 transporter APS55_06035 IPR007554 CDP-glycerol glycerophosphotransferase APS55_06040 IPR036237 Xylose isomerase-like superfamily APS55_06040 IPR013022 Xylose isomerase-like, TIM barrel domain APS55_06040 IPR001719 AP endonuclease 2 APS55_06040 IPR018246 AP endonuclease 2, zinc binding site APS55_06045 IPR005177 Bifunctional kinase-pyrophosphorylase APS55_06045 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein APS55_06050 IPR001911 Ribosomal protein S21 APS55_06050 IPR018278 Ribosomal protein S21, conserved site APS55_06050 IPR038380 Ribosomal protein S21 superfamily APS55_06055 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like APS55_06055 IPR019004 Uncharacterised protein YqeY/Aim41 APS55_06055 IPR042184 YqeY/Aim41, N-terminal domain APS55_06055 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 APS55_06060 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06060 IPR003714 PhoH-like protein APS55_06065 IPR020549 Endoribonuclease YbeY, conserved site APS55_06065 IPR002036 Endoribonuclease YbeY APS55_06065 IPR023091 Metalloprotease catalytic domain superfamily, predicted APS55_06070 IPR033717 Undecaprenol kinase APS55_06070 IPR036945 Diacylglycerol kinase (DAGK) superfamily APS55_06070 IPR000829 DAGK family APS55_06075 IPR005662 GTP-binding protein Era APS55_06075 IPR006073 GTP binding domain APS55_06075 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06075 IPR004044 K Homology domain, type 2 APS55_06075 IPR015946 K homology domain-like, alpha/beta APS55_06075 IPR005225 Small GTP-binding protein domain APS55_06075 IPR009019 K homology domain superfamily, prokaryotic type APS55_06075 IPR030388 Era-type guanine nucleotide-binding (G) domain APS55_06080 IPR037278 ARFGAP/RecO-like zinc finger APS55_06080 IPR022572 DNA replication/recombination mediator RecO, N-terminal APS55_06080 IPR012340 Nucleic acid-binding, OB-fold APS55_06080 IPR003717 Recombination protein O, RecO APS55_06080 IPR042242 Recombination protein O, zinc-binding domain APS55_06085 IPR002310 Glycine-tRNA ligase, alpha subunit APS55_06085 IPR006194 Glycine-tRNA synthetase, heterodimeric APS55_06090 IPR006194 Glycine-tRNA synthetase, heterodimeric APS55_06090 IPR015944 Glycine-tRNA ligase, beta subunit APS55_06095 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal APS55_06095 IPR013264 DNA primase, catalytic core, N-terminal APS55_06095 IPR019475 DNA primase, DnaB-helicase binding domain APS55_06095 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily APS55_06095 IPR036977 DNA Primase, CHC2-type zinc finger APS55_06095 IPR030846 DNA primase DnaG, bacteria APS55_06095 IPR034151 Bacterial DnaG primase, TOPRIM domain APS55_06095 IPR006171 TOPRIM domain APS55_06095 IPR002694 Zinc finger, CHC2-type APS55_06095 IPR006295 DNA primase, DnaG APS55_06100 IPR013325 RNA polymerase sigma factor, region 2 APS55_06100 IPR007624 RNA polymerase sigma-70 region 3 APS55_06100 IPR014284 RNA polymerase sigma-70 like domain APS55_06100 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_06100 IPR028630 RNA polymerase sigma factor RpoD APS55_06100 IPR012760 RNA polymerase sigma factor RpoD, C-terminal APS55_06100 IPR013324 RNA polymerase sigma factor, region 3/4-like APS55_06100 IPR042189 Sigma-70 factor, region 1.1 superfamily APS55_06100 IPR007630 RNA polymerase sigma-70 region 4 APS55_06100 IPR007127 RNA polymerase sigma factor 70, region 1.1 APS55_06100 IPR007627 RNA polymerase sigma-70 region 2 APS55_06100 IPR000943 RNA polymerase sigma-70 APS55_06100 IPR009042 RNA polymerase sigma-70 region 1.2 APS55_06105 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_06105 IPR006901 tRNA methyltransferase TrmK APS55_06110 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 APS55_06110 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily APS55_06115 IPR036264 Bacterial exopeptidase dimerisation domain APS55_06115 IPR010161 Peptidase M20B, tripeptide aminopeptidase APS55_06115 IPR002933 Peptidase M20 APS55_06115 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site APS55_06115 IPR011650 Peptidase M20, dimerisation domain APS55_06120 IPR001270 ClpA/B family APS55_06120 IPR028299 ClpA/B, conserved site 2 APS55_06120 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06120 IPR041546 ClpA/ClpB, AAA lid domain APS55_06120 IPR018368 ClpA/B, conserved site 1 APS55_06120 IPR036628 Clp, N-terminal domain superfamily APS55_06120 IPR003593 AAA+ ATPase domain APS55_06120 IPR003959 ATPase, AAA-type, core APS55_06120 IPR017730 Chaperonin ClpB APS55_06120 IPR004176 Clp, N-terminal APS55_06120 IPR019489 Clp ATPase, C-terminal APS55_06130 IPR040982 DNA polymerase III alpha subunit finger domain APS55_06130 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain APS55_06130 IPR029460 DNA polymerase, helix-hairpin-helix motif APS55_06130 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain APS55_06130 IPR004805 DNA polymerase III, alpha subunit APS55_06130 IPR016195 Polymerase/histidinol phosphatase-like APS55_06130 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type APS55_06130 IPR003141 Polymerase/histidinol phosphatase, N-terminal APS55_06130 IPR004013 PHP domain APS55_06135 IPR008279 PEP-utilising enzyme, mobile domain APS55_06135 IPR001697 Pyruvate kinase APS55_06135 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily APS55_06135 IPR040442 Pyruvate kinase-like domain superfamily APS55_06135 IPR011037 Pyruvate kinase-like, insert domain superfamily APS55_06135 IPR015793 Pyruvate kinase, barrel APS55_06135 IPR015795 Pyruvate kinase, C-terminal APS55_06135 IPR036918 Pyruvate kinase, C-terminal domain superfamily APS55_06135 IPR015806 Pyruvate kinase, insert domain superfamily APS55_06140 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_06140 IPR039566 Conserved virulence factor B, S1 domain APS55_06140 IPR040764 Conserved virulence factor B-like, winged helix domain APS55_06140 IPR014464 Conserved virulence factor B APS55_06145 IPR010998 Integrase/recombinase, N-terminal APS55_06145 IPR011932 Tyrosine recombinase XerD APS55_06145 IPR023009 Tyrosine recombinase XerC/XerD APS55_06145 IPR004107 Integrase, SAM-like, N-terminal APS55_06145 IPR011010 DNA breaking-rejoining enzyme, catalytic core APS55_06145 IPR002104 Integrase, catalytic domain APS55_06145 IPR013762 Integrase-like, catalytic domain superfamily APS55_06150 IPR000182 GNAT domain APS55_06150 IPR016181 Acyl-CoA N-acyltransferase APS55_06155 IPR003768 Segregation and condensation protein A APS55_06160 IPR005234 Chromosome segregation/condensation protein ScpB APS55_06160 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_06160 IPR036390 Winged helix DNA-binding domain superfamily APS55_06165 IPR002942 RNA-binding S4 domain APS55_06165 IPR036986 RNA-binding S4 domain superfamily APS55_06165 IPR006145 Pseudouridine synthase, RsuA/RluA APS55_06165 IPR020103 Pseudouridine synthase, catalytic domain superfamily APS55_06165 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site APS55_06165 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain APS55_06165 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F APS55_06170 IPR024529 ECF transporter, substrate-specific component APS55_06170 IPR025720 ECF transporter, Riboflavin transporter RibU APS55_06180 IPR004589 DNA helicase, ATP-dependent, RecQ type APS55_06180 IPR014001 Helicase superfamily 1/2, ATP-binding domain APS55_06180 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site APS55_06180 IPR011545 DEAD/DEAH box helicase domain APS55_06180 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06180 IPR001650 Helicase, C-terminal APS55_06190 IPR011994 Cytidylate kinase domain APS55_06190 IPR003136 Cytidylate kinase APS55_06190 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06195 IPR022967 RNA-binding domain, S1 APS55_06195 IPR012340 Nucleic acid-binding, OB-fold APS55_06195 IPR003029 S1 domain APS55_06200 IPR032859 GTPase Der, C-terminal KH-domain-like APS55_06200 IPR005225 Small GTP-binding protein domain APS55_06200 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06200 IPR031166 EngA-type guanine nucleotide-binding (G) domain APS55_06200 IPR016484 GTP-binding protein EngA APS55_06200 IPR015946 K homology domain-like, alpha/beta APS55_06200 IPR006073 GTP binding domain APS55_06205 IPR020816 Histone-like DNA-binding protein, conserved site APS55_06205 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily APS55_06205 IPR000119 Histone-like DNA-binding protein APS55_06220 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain APS55_06220 IPR002646 Poly A polymerase, head domain APS55_06220 IPR023068 CCA-adding enzyme, firmicutes APS55_06220 IPR032810 CCA-adding enzyme, C-terminal APS55_06225 IPR003439 ABC transporter-like APS55_06225 IPR017871 ABC transporter, conserved site APS55_06225 IPR032524 ABC transporter Uup, C-terminal APS55_06225 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06225 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily APS55_06225 IPR032781 ABC-transporter extension domain APS55_06225 IPR003593 AAA+ ATPase domain APS55_06230 IPR000398 Thymidylate synthase APS55_06230 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain APS55_06230 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily APS55_06230 IPR020940 Thymidylate synthase, active site APS55_06235 IPR024072 Dihydrofolate reductase-like domain superfamily APS55_06235 IPR017925 Dihydrofolate reductase conserved site APS55_06235 IPR001796 Dihydrofolate reductase domain APS55_06235 IPR012259 Dihydrofolate reductase APS55_06240 IPR036514 SGNH hydrolase superfamily APS55_06240 IPR013830 SGNH hydrolase-type esterase domain APS55_06250 IPR010673 Protein of unknown function UPF0346 APS55_06250 IPR036806 YozE SAM-like superfamily APS55_06250 IPR023089 YozE SAM-like domain APS55_06255 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain APS55_06255 IPR019991 GTP-binding protein, ribosome biogenesis APS55_06255 IPR016478 GTPase, MTG1 APS55_06255 IPR006073 GTP binding domain APS55_06255 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily APS55_06255 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06260 IPR024567 Ribonuclease HII/HIII domain APS55_06260 IPR036397 Ribonuclease H superfamily APS55_06260 IPR012337 Ribonuclease H-like superfamily APS55_06260 IPR022898 Ribonuclease HII APS55_06260 IPR001352 Ribonuclease HII/HIII APS55_06265 IPR003488 DNA recombination-mediator protein A APS55_06265 IPR041104 DNA processing protein A, sterile alpha motif domain APS55_06270 IPR003602 DNA topoisomerase, type IA, DNA-binding domain APS55_06270 IPR000380 DNA topoisomerase, type IA APS55_06270 IPR034149 DNA topoisomerase 1, TOPRIM domain APS55_06270 IPR006171 TOPRIM domain APS55_06270 IPR028612 DNA topoisomerase I, type IA APS55_06270 IPR005733 DNA topoisomerase I, bacterial-type APS55_06270 IPR013498 DNA topoisomerase, type IA, zn finger APS55_06270 IPR023405 DNA topoisomerase, type IA, core domain APS55_06270 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 APS55_06270 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 APS55_06270 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 APS55_06270 IPR013497 DNA topoisomerase, type IA, central APS55_06270 IPR003601 DNA topoisomerase, type IA, domain 2 APS55_06270 IPR023406 DNA topoisomerase, type IA, active site APS55_06275 IPR013762 Integrase-like, catalytic domain superfamily APS55_06275 IPR011010 DNA breaking-rejoining enzyme, catalytic core APS55_06275 IPR010998 Integrase/recombinase, N-terminal APS55_06275 IPR004107 Integrase, SAM-like, N-terminal APS55_06275 IPR011931 Tyrosine recombinase XerC APS55_06275 IPR023009 Tyrosine recombinase XerC/XerD APS55_06275 IPR002104 Integrase, catalytic domain APS55_06280 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase APS55_06280 IPR011013 Galactose mutarotase-like domain superfamily APS55_06280 IPR014718 Glycoside hydrolase-type carbohydrate-binding APS55_06280 IPR037481 Protein LacX APS55_06285 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes APS55_06285 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 APS55_06285 IPR028055 Membrane insertase YidC/Oxa1, C-terminal APS55_06290 IPR017968 Acylphosphatase, conserved site APS55_06290 IPR036046 Acylphosphatase-like domain superfamily APS55_06290 IPR001792 Acylphosphatase-like domain APS55_06290 IPR020456 Acylphosphatase APS55_06295 IPR029028 Alpha/beta knot methyltransferases APS55_06295 IPR001537 tRNA/rRNA methyltransferase, SpoU type APS55_06295 IPR013123 RNA 2-O ribose methyltransferase, substrate binding APS55_06295 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APS55_06295 IPR029064 50S ribosomal protein L30e-like APS55_06305 IPR011991 ArsR-like helix-turn-helix domain APS55_06305 IPR002577 Helix-turn-helix, HxlR type APS55_06305 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_06305 IPR036390 Winged helix DNA-binding domain superfamily APS55_06310 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial APS55_06310 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal APS55_06310 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit APS55_06310 IPR006195 Aminoacyl-tRNA synthetase, class II APS55_06310 IPR002319 Phenylalanyl-tRNA synthetase APS55_06310 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm APS55_06315 IPR009061 Putative DNA-binding domain superfamily APS55_06315 IPR005121 Ferrodoxin-fold anticodon-binding domain APS55_06315 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily APS55_06315 IPR012340 Nucleic acid-binding, OB-fold APS55_06315 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit APS55_06315 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 APS55_06315 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain APS55_06315 IPR002547 tRNA-binding domain APS55_06315 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain APS55_06315 IPR005147 tRNA synthetase, B5-domain APS55_06315 IPR005146 B3/B4 tRNA-binding domain APS55_06320 IPR003770 Endolytic murein transglycosylase APS55_06325 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06325 IPR026008 Uridine kinase APS55_06325 IPR000764 Uridine kinase-like APS55_06325 IPR006083 Phosphoribulokinase/uridine kinase APS55_06330 IPR018151 Transcription elongation factor, GreA/GreB, conserved site APS55_06330 IPR006359 Transcription elongation factor GreA APS55_06330 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal APS55_06330 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal APS55_06330 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily APS55_06330 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily APS55_06330 IPR023459 Transcription elongation factor GreA/GreB family APS55_06330 IPR028624 Transcription elongation factor GreA/GreB APS55_06340 IPR038965 Transposase InsF-like APS55_06340 IPR001584 Integrase, catalytic core APS55_06340 IPR012337 Ribonuclease H-like superfamily APS55_06340 IPR036397 Ribonuclease H superfamily APS55_06350 IPR036138 Penicillin-binding protein, dimerisation domain superfamily APS55_06350 IPR005311 Penicillin-binding protein, dimerisation domain APS55_06350 IPR001460 Penicillin-binding protein, transpeptidase APS55_06350 IPR012338 Beta-lactamase/transpeptidase-like APS55_06355 IPR038584 Ribosomal protein L33 superfamily APS55_06355 IPR001705 Ribosomal protein L33 APS55_06355 IPR018264 Ribosomal protein L33, conserved site APS55_06355 IPR011332 Zinc-binding ribosomal protein APS55_06360 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily APS55_06360 IPR002698 5-formyltetrahydrofolate cyclo-ligase APS55_06360 IPR037171 NagB/RpiA transferase-like APS55_06365 IPR022764 Peptidase S54, rhomboid domain APS55_06365 IPR035952 Rhomboid-like superfamily APS55_06375 IPR000600 ROK family APS55_06375 IPR004654 Glucokinase ROK APS55_06390 IPR036397 Ribonuclease H superfamily APS55_06390 IPR012337 Ribonuclease H-like superfamily APS55_06390 IPR001584 Integrase, catalytic core APS55_06390 IPR038965 Transposase InsF-like APS55_06395 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06395 IPR018022 IPP transferase APS55_06395 IPR039657 Dimethylallyltransferase APS55_06400 IPR009061 Putative DNA-binding domain superfamily APS55_06400 IPR000551 MerR-type HTH domain APS55_06405 IPR004809 Glutamine synthetase type I APS55_06405 IPR027303 Glutamine synthetase, glycine-rich site APS55_06405 IPR027302 Glutamine synthetase, N-terminal conserved site APS55_06405 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain APS55_06405 IPR036651 Glutamine synthetase, N-terminal domain superfamily APS55_06405 IPR008147 Glutamine synthetase, beta-Grasp domain APS55_06405 IPR008146 Glutamine synthetase, catalytic domain APS55_06420 IPR028909 Ribosomal protein L21-like APS55_06420 IPR036164 L21-like superfamily APS55_06420 IPR018258 Ribosomal protein L21, conserved site APS55_06420 IPR001787 Ribosomal protein L21 APS55_06430 IPR018261 Ribosomal protein L27, conserved site APS55_06430 IPR001684 Ribosomal protein L27 APS55_06435 IPR013185 Translation elongation factor, KOW-like APS55_06435 IPR011768 Translation elongation factor P APS55_06435 IPR013852 Translation elongation factor P/YeiP, conserved site APS55_06435 IPR001059 Translation elongation factor P/YeiP, central APS55_06435 IPR012340 Nucleic acid-binding, OB-fold APS55_06435 IPR014722 Ribosomal protein L2, domain 2 APS55_06435 IPR020599 Translation elongation factor P/YeiP APS55_06435 IPR008991 Translation protein SH3-like domain superfamily APS55_06435 IPR015365 Elongation factor P, C-terminal APS55_06440 IPR005531 Alkaline shock protein Asp23 APS55_06445 IPR006027 NusB/RsmB/TIM44 APS55_06445 IPR011605 NusB antitermination factor APS55_06445 IPR035926 NusB-like superfamily APS55_06450 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APS55_06450 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase APS55_06450 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APS55_06450 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site APS55_06450 IPR036291 NAD(P)-binding domain superfamily APS55_06455 IPR003753 Exonuclease VII, large subunit APS55_06455 IPR020579 Exonuclease VII, large subunit, C-terminal APS55_06455 IPR025824 OB-fold nucleic acid binding domain APS55_06460 IPR037004 Exonuclease VII, small subunit superfamily APS55_06460 IPR003761 Exonuclease VII, small subunit APS55_06465 IPR008949 Isoprenoid synthase domain superfamily APS55_06465 IPR000092 Polyprenyl synthetase APS55_06465 IPR033749 Polyprenyl synthetase, conserved site APS55_06470 IPR002942 RNA-binding S4 domain APS55_06470 IPR036986 RNA-binding S4 domain superfamily APS55_06470 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_06470 IPR004538 Haemolysin A /rRNA methyltransferase TlyA APS55_06470 IPR002877 Ribosomal RNA methyltransferase FtsJ domain APS55_06475 IPR004604 DNA recombination/repair protein RecN APS55_06475 IPR038729 Rad50/SbcC-type AAA domain APS55_06475 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06480 IPR017665 Guanylate kinase APS55_06480 IPR008145 Guanylate kinase/L-type calcium channel beta subunit APS55_06480 IPR008144 Guanylate kinase-like domain APS55_06480 IPR020590 Guanylate kinase, conserved site APS55_06480 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06485 IPR036161 RPB6/omega subunit-like superfamily APS55_06485 IPR012293 RNA polymerase subunit, RPB6/omega APS55_06485 IPR006110 RNA polymerase, subunit omega/K/RPB6 APS55_06485 IPR003716 DNA-directed RNA polymerase, omega subunit APS55_06490 IPR003382 Flavoprotein APS55_06490 IPR036551 Flavin prenyltransferase-like APS55_06490 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal APS55_06490 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC APS55_06490 IPR035929 CoaB-like superfamily APS55_06495 IPR014001 Helicase superfamily 1/2, ATP-binding domain APS55_06495 IPR001650 Helicase, C-terminal APS55_06495 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06495 IPR041236 Primosomal protein N, C-terminal domain APS55_06495 IPR041222 Primosomal protein N', 3' DNA-binding domain APS55_06495 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily APS55_06495 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain APS55_06495 IPR005259 Primosomal protein N' APS55_06495 IPR006935 Helicase/UvrB, N-terminal APS55_06500 IPR005794 Methionyl-tRNA formyltransferase APS55_06500 IPR037022 Formyl transferase, C-terminal domain superfamily APS55_06500 IPR005793 Formyl transferase, C-terminal APS55_06500 IPR002376 Formyl transferase, N-terminal APS55_06500 IPR036477 Formyl transferase, N-terminal domain superfamily APS55_06500 IPR001555 Phosphoribosylglycinamide formyltransferase, active site APS55_06500 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain APS55_06500 IPR011034 Formyl transferase-like, C-terminal domain superfamily APS55_06505 IPR023267 RNA (C5-cytosine) methyltransferase APS55_06505 IPR006027 NusB/RsmB/TIM44 APS55_06505 IPR035926 NusB-like superfamily APS55_06505 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type APS55_06505 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site APS55_06505 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_06505 IPR004573 rRNA small subunit methyltransferase B APS55_06510 IPR036457 PPM-type phosphatase domain superfamily APS55_06510 IPR015655 Protein phosphatase 2C family APS55_06510 IPR001932 PPM-type phosphatase domain APS55_06515 IPR008271 Serine/threonine-protein kinase, active site APS55_06515 IPR017441 Protein kinase, ATP binding site APS55_06515 IPR011009 Protein kinase-like domain superfamily APS55_06515 IPR005543 PASTA domain APS55_06515 IPR000719 Protein kinase domain APS55_06520 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain APS55_06520 IPR012340 Nucleic acid-binding, OB-fold APS55_06520 IPR004881 Ribosome biogenesis GTPase RsgA APS55_06520 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06520 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal APS55_06520 IPR010914 RsgA GTPase domain APS55_06525 IPR026019 Ribulose-phosphate 3-epimerase APS55_06525 IPR000056 Ribulose-phosphate 3-epimerase-like APS55_06525 IPR011060 Ribulose-phosphate binding barrel APS55_06525 IPR013785 Aldolase-type TIM barrel APS55_06530 IPR007371 Thiamin pyrophosphokinase, catalytic domain APS55_06530 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily APS55_06530 IPR036371 Thiamin pyrophosphokinase, thiamin-binding domain superfamily APS55_06530 IPR006282 Thiamin pyrophosphokinase APS55_06530 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain APS55_06535 IPR034704 L28p-like APS55_06535 IPR037147 Ribosomal protein L28/L24 superfamily APS55_06535 IPR001383 Ribosomal protein L28 APS55_06535 IPR026569 Ribosomal protein L28/L24 APS55_06540 IPR005531 Alkaline shock protein Asp23 APS55_06545 IPR033470 Uncharacterised protein, DhaK domain APS55_06545 IPR036117 DhaL domain superfamily APS55_06545 IPR004007 DhaL domain APS55_06545 IPR019986 DAK2 domain-containing protein YloV APS55_06550 IPR012340 Nucleic acid-binding, OB-fold APS55_06550 IPR001650 Helicase, C-terminal APS55_06550 IPR033454 RecG, wedge domain APS55_06550 IPR011545 DEAD/DEAH box helicase domain APS55_06550 IPR004609 ATP-dependent DNA helicase RecG APS55_06550 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06550 IPR014001 Helicase superfamily 1/2, ATP-binding domain APS55_06555 IPR003664 Fatty acid synthesis PlsX protein APS55_06555 IPR012281 Phospholipid biosynthesis protein, PlsX-like APS55_06560 IPR009081 Phosphopantetheine binding ACP domain APS55_06560 IPR003231 Acyl carrier protein (ACP) APS55_06560 IPR036736 ACP-like superfamily APS55_06565 IPR036389 Ribonuclease III, endonuclease domain superfamily APS55_06565 IPR000999 Ribonuclease III domain APS55_06565 IPR014720 Double-stranded RNA-binding domain APS55_06565 IPR011907 Ribonuclease III APS55_06570 IPR036277 SMCs flexible hinge superfamily APS55_06570 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06570 IPR024704 Structural maintenance of chromosomes protein APS55_06570 IPR003395 RecF/RecN/SMC, N-terminal APS55_06570 IPR011890 Structural maintenance of chromosomes protein, prokaryotic APS55_06570 IPR010935 SMCs flexible hinge APS55_06575 IPR004390 Signal-recognition particle receptor FtsY APS55_06575 IPR003593 AAA+ ATPase domain APS55_06575 IPR036225 SRP/SRP receptor, N-terminal APS55_06575 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain APS55_06575 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily APS55_06575 IPR013822 Signal recognition particle SRP54, helical bundle APS55_06575 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06580 IPR013324 RNA polymerase sigma factor, region 3/4-like APS55_06580 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like APS55_06580 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_06585 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06585 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily APS55_06585 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain APS55_06585 IPR022941 Signal recognition particle, SRP54 subunit APS55_06585 IPR004780 Signal recognition particle protein APS55_06585 IPR004125 Signal recognition particle, SRP54 subunit, M-domain APS55_06585 IPR013822 Signal recognition particle SRP54, helical bundle APS55_06585 IPR003593 AAA+ ATPase domain APS55_06585 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily APS55_06605 IPR023803 Ribosomal protein S16 domain superfamily APS55_06605 IPR000307 Ribosomal protein S16 APS55_06610 IPR015946 K homology domain-like, alpha/beta APS55_06610 IPR009019 K homology domain superfamily, prokaryotic type APS55_06610 IPR020627 Uncharacterised protein family UPF0109 APS55_06615 IPR036976 RimM, N-terminal domain superfamily APS55_06615 IPR011033 PRC-barrel-like superfamily APS55_06615 IPR027275 PRC-barrel domain APS55_06615 IPR011961 16S rRNA processing protein RimM APS55_06615 IPR009000 Translation protein, beta-barrel domain superfamily APS55_06615 IPR002676 RimM, N-terminal APS55_06620 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain APS55_06620 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APS55_06620 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal APS55_06620 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria APS55_06620 IPR029028 Alpha/beta knot methyltransferases APS55_06625 IPR008991 Translation protein SH3-like domain superfamily APS55_06625 IPR038657 Ribosomal protein L19 superfamily APS55_06625 IPR001857 Ribosomal protein L19 APS55_06625 IPR018257 Ribosomal protein L19, conserved site APS55_06630 IPR005322 Peptidase C69, dipeptidase A APS55_06635 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type APS55_06635 IPR014347 Tautomerase/MIF superfamily APS55_06635 IPR004370 4-oxalocrotonate tautomerase APS55_06640 IPR000577 Carbohydrate kinase, FGGY APS55_06640 IPR005999 Glycerol kinase APS55_06640 IPR018485 Carbohydrate kinase, FGGY, C-terminal APS55_06640 IPR018484 Carbohydrate kinase, FGGY, N-terminal APS55_06640 IPR018483 Carbohydrate kinase, FGGY, conserved site APS55_06645 IPR000150 Cof family APS55_06645 IPR006379 HAD-superfamily hydrolase, subfamily IIB APS55_06645 IPR036412 HAD-like superfamily APS55_06645 IPR023214 HAD superfamily APS55_06650 IPR031340 Ribosomal RNA small subunit methyltransferase F, first C-terminal domain APS55_06650 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type APS55_06650 IPR023267 RNA (C5-cytosine) methyltransferase APS55_06650 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal APS55_06650 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_06665 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent APS55_06665 IPR013785 Aldolase-type TIM barrel APS55_06665 IPR000262 FMN-dependent dehydrogenase APS55_06670 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_06670 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_06670 IPR006204 GHMP kinase N-terminal domain APS55_06670 IPR035102 Phosphomevalonate kinase APS55_06670 IPR005917 Phosphomevalonate kinase, bacteria APS55_06670 IPR013750 GHMP kinase, C-terminal domain APS55_06670 IPR036554 GHMP kinase, C-terminal domain superfamily APS55_06680 IPR022963 Galactokinase, bacterial APS55_06680 IPR019539 Galactokinase galactose-binding domain APS55_06680 IPR013750 GHMP kinase, C-terminal domain APS55_06680 IPR036554 GHMP kinase, C-terminal domain superfamily APS55_06680 IPR006204 GHMP kinase N-terminal domain APS55_06680 IPR006203 GHMP kinase, ATP-binding, conserved site APS55_06680 IPR019741 Galactokinase, conserved site APS55_06680 IPR006206 Mevalonate/galactokinase APS55_06680 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_06680 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_06680 IPR000705 Galactokinase APS55_06685 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain APS55_06685 IPR036397 Ribonuclease H superfamily APS55_06685 IPR001650 Helicase, C-terminal APS55_06685 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type APS55_06685 IPR013520 Exonuclease, RNase T/DNA polymerase III APS55_06685 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06685 IPR006310 3'-5' exonuclease DinG APS55_06685 IPR006555 ATP-dependent helicase, C-terminal APS55_06685 IPR012337 Ribonuclease H-like superfamily APS55_06700 IPR012338 Beta-lactamase/transpeptidase-like APS55_06700 IPR001264 Glycosyl transferase, family 51 APS55_06700 IPR001460 Penicillin-binding protein, transpeptidase APS55_06700 IPR023346 Lysozyme-like domain superfamily APS55_06700 IPR036950 Penicillin binding protein transglycosylase domain APS55_06705 IPR004612 Holliday junction resolvase RecU APS55_06705 IPR011335 Restriction endonuclease type II-like APS55_06705 IPR011856 tRNA endonuclease-like domain superfamily APS55_06710 IPR010697 YspA SLOG family APS55_06715 IPR011229 Cell cycle protein GpsB APS55_06715 IPR007793 DivIVA family APS55_06715 IPR019933 DivIVA domain APS55_06720 IPR004114 THUMP domain APS55_06720 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_06720 IPR000241 Putative RNA methylase domain APS55_06720 IPR002052 DNA methylase, N-6 adenine-specific, conserved site APS55_06725 IPR006076 FAD dependent oxidoreductase APS55_06725 IPR036188 FAD/NAD(P)-binding domain superfamily APS55_06730 IPR036397 Ribonuclease H superfamily APS55_06730 IPR002156 Ribonuclease H domain APS55_06730 IPR012337 Ribonuclease H-like superfamily APS55_06740 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06740 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site APS55_06740 IPR000559 Formate-tetrahydrofolate ligase, FTHFS APS55_06745 IPR001872 Peptidase A8, signal peptidase II APS55_06750 IPR020103 Pseudouridine synthase, catalytic domain superfamily APS55_06750 IPR006145 Pseudouridine synthase, RsuA/RluA APS55_06750 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site APS55_06750 IPR002942 RNA-binding S4 domain APS55_06750 IPR036986 RNA-binding S4 domain superfamily APS55_06750 IPR006225 Pseudouridine synthase, RluC/RluD APS55_06755 IPR029057 Phosphoribosyltransferase-like APS55_06755 IPR023050 Bifunctional protein PyrR APS55_06755 IPR000836 Phosphoribosyltransferase domain APS55_06760 IPR006274 Carbamoyl-phosphate synthase, small subunit APS55_06760 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain APS55_06760 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily APS55_06760 IPR029062 Class I glutamine amidotransferase-like APS55_06760 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain APS55_06760 IPR017926 Glutamine amidotransferase APS55_06765 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain APS55_06765 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily APS55_06765 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain APS55_06765 IPR011607 Methylglyoxal synthase-like domain APS55_06765 IPR036914 Methylglyoxal synthase-like domain superfamily APS55_06765 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain APS55_06765 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain APS55_06765 IPR011761 ATP-grasp fold APS55_06765 IPR006275 Carbamoyl-phosphate synthase, large subunit APS55_06765 IPR016185 Pre-ATP-grasp domain superfamily APS55_06785 IPR029760 Glutathione peroxidase conserved site APS55_06785 IPR029759 Glutathione peroxidase active site APS55_06785 IPR000889 Glutathione peroxidase APS55_06785 IPR036249 Thioredoxin-like superfamily APS55_06800 IPR003797 DegV APS55_06805 IPR008532 NFACT, RNA-binding domain APS55_06820 IPR002569 Peptide methionine sulphoxide reductase MsrA APS55_06820 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily APS55_06825 IPR028427 Peptide methionine sulfoxide reductase APS55_06825 IPR011057 Mss4-like superfamily APS55_06825 IPR002579 Peptide methionine sulphoxide reductase MrsB APS55_06835 IPR038222 DHHA2 domain superfamily APS55_06835 IPR022934 Manganese-dependent inorganic pyrophosphatase, probable APS55_06835 IPR004097 DHHA2 domain APS55_06835 IPR038763 DHH phosphoesterase superfamily APS55_06835 IPR001667 DDH domain APS55_06840 IPR037403 HTH-type transcriptional regulator CynR, PBP2 domain APS55_06840 IPR005119 LysR, substrate-binding APS55_06840 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_06840 IPR000847 Transcription regulator HTH, LysR APS55_06840 IPR036390 Winged helix DNA-binding domain superfamily APS55_06845 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal APS55_06845 IPR013760 DNA topoisomerase, type IIA-like domain superfamily APS55_06845 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily APS55_06845 IPR005741 DNA topoisomerase IV subunit A, Gram-positive APS55_06845 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal APS55_06845 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat APS55_06845 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta APS55_06850 IPR018522 DNA topoisomerase, type IIA, conserved site APS55_06850 IPR006171 TOPRIM domain APS55_06850 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal APS55_06850 IPR002288 DNA gyrase B subunit, C-terminal APS55_06850 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes APS55_06850 IPR003594 Histidine kinase/HSP90-like ATPase APS55_06850 IPR013760 DNA topoisomerase, type IIA-like domain superfamily APS55_06850 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 APS55_06850 IPR001241 DNA topoisomerase, type IIA APS55_06850 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_06850 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_06850 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APS55_06855 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY APS55_06860 IPR003594 Histidine kinase/HSP90-like ATPase APS55_06860 IPR041610 ArlS, sensor domain APS55_06860 IPR003660 HAMP domain APS55_06860 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APS55_06860 IPR005467 Histidine kinase domain APS55_06860 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain APS55_06860 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily APS55_06860 IPR004358 Signal transduction histidine kinase-related protein, C-terminal APS55_06865 IPR011006 CheY-like superfamily APS55_06865 IPR016032 Signal transduction response regulator, C-terminal effector APS55_06865 IPR001789 Signal transduction response regulator, receiver domain APS55_06865 IPR039420 Transcriptional regulatory protein WalR-like APS55_06865 IPR001867 OmpR/PhoB-type DNA-binding domain APS55_06865 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_06870 IPR002677 Ribosomal protein L32p APS55_06870 IPR011332 Zinc-binding ribosomal protein APS55_06880 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_06880 IPR008513 tRNA(Met) cytidine acetate ligase APS55_06885 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_06885 IPR041698 Methyltransferase domain 25 APS55_06890 IPR004394 Protein Iojap/ribosomal silencing factor RsfS APS55_06895 IPR006674 HD domain APS55_06895 IPR005249 Conserved hypothetical protein CHP00488 APS55_06895 IPR003607 HD/PDEase domain APS55_06900 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase APS55_06900 IPR004821 Cytidyltransferase-like domain APS55_06900 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_06910 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain APS55_06910 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06910 IPR006073 GTP binding domain APS55_06910 IPR019988 GTP-binding protein, riobosome biogenesis, YqeH APS55_06920 IPR005813 Ribosomal protein L20 APS55_06920 IPR035566 Ribosomal protein L20, C-terminal APS55_06925 IPR001706 Ribosomal protein L35, non-mitochondrial APS55_06925 IPR037229 Ribosomal protein L35 superfamily APS55_06925 IPR021137 Ribosomal protein L35 APS55_06925 IPR018265 Ribosomal protein L35, conserved site APS55_06930 IPR019814 Translation initiation factor 3, N-terminal APS55_06930 IPR019815 Translation initiation factor 3, C-terminal APS55_06930 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily APS55_06930 IPR019813 Translation initiation factor 3, conserved site APS55_06930 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily APS55_06930 IPR001288 Translation initiation factor 3 APS55_06935 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) APS55_06935 IPR006195 Aminoacyl-tRNA synthetase, class II APS55_06935 IPR004154 Anticodon-binding APS55_06935 IPR036621 Anticodon-binding domain superfamily APS55_06935 IPR012675 Beta-grasp domain superfamily APS55_06935 IPR004095 TGS APS55_06935 IPR012676 TGS-like APS55_06935 IPR002320 Threonine-tRNA ligase, class IIa APS55_06935 IPR012947 Threonyl/alanyl tRNA synthetase, SAD APS55_06935 IPR033728 Threonine-tRNA ligase catalytic core domain APS55_06935 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily APS55_06940 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06940 IPR002611 IstB-like ATP-binding protein APS55_06940 IPR003593 AAA+ ATPase domain APS55_06940 IPR009928 Primosomal DnaI, N-terminal APS55_06945 IPR006343 DnaD domain APS55_06950 IPR005144 ATP-cone domain APS55_06950 IPR003796 Ribonucleotide reductase regulator NrdR-like APS55_06955 IPR001977 Dephospho-CoA kinase APS55_06955 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_06960 IPR020629 Formamidopyrimidine-DNA glycosylase APS55_06960 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding APS55_06960 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type APS55_06960 IPR010979 Ribosomal protein S13-like, H2TH APS55_06960 IPR035937 MutM-like, N-terminal APS55_06960 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain APS55_06960 IPR010663 Zinc finger, FPG/IleRS-type APS55_06965 IPR008918 Helix-hairpin-helix motif, class 2 APS55_06965 IPR002298 DNA polymerase A APS55_06965 IPR018320 DNA polymerase 1 APS55_06965 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal APS55_06965 IPR002562 3'-5' exonuclease domain APS55_06965 IPR029060 PIN-like domain superfamily APS55_06965 IPR002421 5'-3' exonuclease, N-terminal APS55_06965 IPR020045 DNA polymerase I-like, H3TH domain APS55_06965 IPR012337 Ribonuclease H-like superfamily APS55_06965 IPR001098 DNA-directed DNA polymerase, family A, palm domain APS55_06965 IPR019760 DNA-directed DNA polymerase, family A, conserved site APS55_06965 IPR036279 5'-3' exonuclease, C-terminal domain superfamily APS55_06965 IPR036397 Ribonuclease H superfamily APS55_06970 IPR006214 Bax inhibitor 1-related APS55_06975 IPR005758 UDP-N-acetylmuramate--L-alanine ligase APS55_06975 IPR000713 Mur ligase, N-terminal catalytic domain APS55_06975 IPR013221 Mur ligase, central APS55_06975 IPR036615 Mur ligase, C-terminal domain superfamily APS55_06975 IPR004101 Mur ligase, C-terminal APS55_06975 IPR036565 Mur-like, catalytic domain superfamily APS55_06985 IPR027855 Domain of unknown function DUF4479 APS55_06985 IPR012340 Nucleic acid-binding, OB-fold APS55_06985 IPR002547 tRNA-binding domain APS55_06985 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain APS55_06985 IPR037154 YtpR-like superfamily APS55_06990 IPR036249 Thioredoxin-like superfamily APS55_06990 IPR013766 Thioredoxin domain APS55_06995 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_06995 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type APS55_07005 IPR003593 AAA+ ATPase domain APS55_07005 IPR003439 ABC transporter-like APS55_07005 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07010 IPR019808 Histidine triad, conserved site APS55_07010 IPR001310 Histidine triad (HIT) protein APS55_07010 IPR036265 HIT-like superfamily APS55_07010 IPR039384 HINT family APS55_07010 IPR011146 HIT-like domain APS55_07020 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type APS55_07020 IPR027304 Trigger factor/SurA domain superfamily APS55_07020 IPR023059 Foldase protein PrsA APS55_07025 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07025 IPR038734 Uncharacterized protein YhaN, AAA domain APS55_07030 IPR014576 Predicted phosphoesterase, YhaO type APS55_07030 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain APS55_07030 IPR029052 Metallo-dependent phosphatase-like APS55_07030 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type APS55_07035 IPR001460 Penicillin-binding protein, transpeptidase APS55_07035 IPR012338 Beta-lactamase/transpeptidase-like APS55_07035 IPR001264 Glycosyl transferase, family 51 APS55_07035 IPR023346 Lysozyme-like domain superfamily APS55_07035 IPR036950 Penicillin binding protein transglycosylase domain APS55_07040 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding APS55_07040 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_07040 IPR008909 DALR anticodon binding APS55_07040 IPR001278 Arginine-tRNA ligase APS55_07040 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily APS55_07040 IPR005148 Arginyl tRNA synthetase N-terminal domain APS55_07040 IPR035684 Arginyl-tRNA synthetase, catalytic core domain APS55_07055 IPR018177 L-lactate dehydrogenase, active site APS55_07055 IPR022383 Lactate/malate dehydrogenase, C-terminal APS55_07055 IPR001557 L-lactate/malate dehydrogenase APS55_07055 IPR036291 NAD(P)-binding domain superfamily APS55_07055 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal APS55_07055 IPR001236 Lactate/malate dehydrogenase, N-terminal APS55_07065 IPR001920 Asp/Glu racemase APS55_07065 IPR018187 Asp/Glu racemase, active site 1 APS55_07065 IPR033134 Asp/Glu racemase, active site 2 APS55_07065 IPR004380 Aspartate racemase APS55_07065 IPR015942 Asp/Glu/hydantoin racemase APS55_07070 IPR011761 ATP-grasp fold APS55_07075 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase APS55_07075 IPR035911 MurE/MurF, N-terminal APS55_07075 IPR036615 Mur ligase, C-terminal domain superfamily APS55_07075 IPR013221 Mur ligase, central APS55_07075 IPR036565 Mur-like, catalytic domain superfamily APS55_07075 IPR004101 Mur ligase, C-terminal APS55_07080 IPR006426 Asparagine synthase, glutamine-hydrolyzing APS55_07080 IPR017932 Glutamine amidotransferase type 2 domain APS55_07080 IPR033738 Asparagine synthase, N-terminal domain APS55_07080 IPR001962 Asparagine synthase APS55_07080 IPR029055 Nucleophile aminohydrolases, N-terminal APS55_07085 IPR004602 UvrABC system subunit A APS55_07085 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07085 IPR017871 ABC transporter, conserved site APS55_07085 IPR041102 UvrA, interaction domain APS55_07085 IPR003439 ABC transporter-like APS55_07085 IPR041552 UvrA DNA-binding domain APS55_07100 IPR036019 Gated mechanosensitive channel APS55_07100 IPR019823 Large-conductance mechanosensitive channel, conserved site APS55_07100 IPR001185 Large-conductance mechanosensitive channel APS55_07100 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L APS55_07105 IPR002624 Deoxynucleoside kinase APS55_07105 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07105 IPR031314 Deoxynucleoside kinase domain APS55_07110 IPR011291 Peptidase M20A, peptidase V APS55_07110 IPR002933 Peptidase M20 APS55_07110 IPR010964 Peptidase M20A, peptidase V-related APS55_07110 IPR036264 Bacterial exopeptidase dimerisation domain APS55_07110 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site APS55_07115 IPR029056 Ribokinase-like APS55_07115 IPR017953 Carbohydrate kinase, predicted, conserved site APS55_07115 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase APS55_07125 IPR002797 Polysaccharide biosynthesis protein APS55_07125 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type APS55_07125 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain APS55_07130 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding APS55_07130 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_07130 IPR015413 Methionyl/Leucyl tRNA synthetase APS55_07130 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site APS55_07130 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding APS55_07130 IPR002302 Leucine-tRNA ligase APS55_07130 IPR025709 Leucyl-tRNA synthetase, editing domain APS55_07130 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain APS55_07130 IPR002300 Aminoacyl-tRNA synthetase, class Ia APS55_07135 IPR010719 Putative rRNA methylase APS55_07135 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_07140 IPR020846 Major facilitator superfamily domain APS55_07140 IPR011701 Major facilitator superfamily APS55_07140 IPR004638 Drug resistance transporter EmrB-like APS55_07140 IPR036259 MFS transporter superfamily APS55_07140 IPR005829 Sugar transporter, conserved site APS55_07145 IPR022636 S-adenosylmethionine synthetase superfamily APS55_07145 IPR002133 S-adenosylmethionine synthetase APS55_07145 IPR022628 S-adenosylmethionine synthetase, N-terminal APS55_07145 IPR022629 S-adenosylmethionine synthetase, central domain APS55_07145 IPR022630 S-adenosylmethionine synthetase, C-terminal APS55_07145 IPR022631 S-adenosylmethionine synthetase, conserved site APS55_07225 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase APS55_07225 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain APS55_07225 IPR029000 Cyclophilin-like domain superfamily APS55_07225 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site APS55_07230 IPR032816 SNARE associated Golgi protein APS55_07230 IPR032818 DedA family APS55_07240 IPR038965 Transposase InsF-like APS55_07240 IPR001584 Integrase, catalytic core APS55_07240 IPR012337 Ribonuclease H-like superfamily APS55_07240 IPR036397 Ribonuclease H superfamily APS55_07250 IPR023214 HAD superfamily APS55_07250 IPR006354 HAD-superfamily hydrolase, subfamily IIA, hypothetical 1 APS55_07250 IPR006357 HAD-superfamily hydrolase, subfamily IIA APS55_07250 IPR036412 HAD-like superfamily APS55_07255 IPR038141 YutD-like superfamily APS55_07255 IPR009370 Protein of unknown function DUF1027 APS55_07260 IPR008334 5'-Nucleotidase, C-terminal APS55_07260 IPR011240 Phosphoesterase-related protein YunD APS55_07260 IPR029052 Metallo-dependent phosphatase-like APS55_07260 IPR006179 5'-Nucleotidase/apyrase APS55_07260 IPR036907 5'-Nucleotidase, C-terminal domain superfamily APS55_07270 IPR004840 Amino acid permease, conserved site APS55_07270 IPR004841 Amino acid permease/ SLC12A domain APS55_07275 IPR023865 Aliphatic acid kinase, short-chain, conserved site APS55_07275 IPR004372 Acetate/propionate kinase APS55_07275 IPR000890 Aliphatic acid kinase, short-chain APS55_07280 IPR003356 DNA methylase, adenine-specific APS55_07280 IPR016843 S-adenosyl-L-methionine dependent adenine methyltransferase, bacteria, predicted APS55_07280 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APS55_07300 IPR000983 Bacterial general secretion pathway protein G-type pilin APS55_07300 IPR012902 Prokaryotic N-terminal methylation site APS55_07300 IPR016940 ComG operon protein C APS55_07310 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07310 IPR003593 AAA+ ATPase domain APS55_07310 IPR001482 Type II/IV secretion system protein APS55_07315 IPR017856 Integrase-like, N-terminal APS55_07315 IPR002876 Transcriptional regulator TACO1-like APS55_07315 IPR029072 YebC-like APS55_07315 IPR026564 Transcriptional regulator TACO1-like, domain 3 APS55_07320 IPR028082 Periplasmic binding protein-like I APS55_07320 IPR000843 LacI-type HTH domain APS55_07320 IPR010982 Lambda repressor-like, DNA-binding domain superfamily APS55_07320 IPR006377 Catabolite control protein A APS55_07335 IPR020922 dITP/XTP pyrophosphatase APS55_07335 IPR002637 Ham1-like protein APS55_07335 IPR029001 Inosine triphosphate pyrophosphatase-like APS55_07340 IPR001920 Asp/Glu racemase APS55_07340 IPR015942 Asp/Glu/hydantoin racemase APS55_07340 IPR018187 Asp/Glu racemase, active site 1 APS55_07340 IPR033134 Asp/Glu racemase, active site 2 APS55_07340 IPR004391 Glutamate racemase APS55_07345 IPR019642 Protein of unknown function DUF2507 APS55_07345 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily APS55_07350 IPR017937 Thioredoxin, conserved site APS55_07350 IPR005746 Thioredoxin APS55_07350 IPR036249 Thioredoxin-like superfamily APS55_07350 IPR013766 Thioredoxin domain APS55_07355 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07355 IPR002625 Smr domain APS55_07355 IPR036063 Smr domain superfamily APS55_07355 IPR036187 DNA mismatch repair protein MutS, core domain superfamily APS55_07355 IPR000432 DNA mismatch repair protein MutS, C-terminal APS55_07355 IPR007696 DNA mismatch repair protein MutS, core APS55_07355 IPR005747 Endonuclease MutS2 APS55_07370 IPR009711 Uncharacterised protein family UPF0473 APS55_07375 IPR012337 Ribonuclease H-like superfamily APS55_07375 IPR037027 YqgF/RNase H-like domain superfamily APS55_07375 IPR006641 YqgF/RNase H-like domain APS55_07375 IPR005227 Putative pre-16S rRNA nuclease APS55_07380 IPR009309 IreB regulatory phosphoprotein APS55_07385 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily APS55_07385 IPR009000 Translation protein, beta-barrel domain superfamily APS55_07385 IPR012947 Threonyl/alanyl tRNA synthetase, SAD APS55_07385 IPR003156 DHHA1 domain APS55_07385 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal APS55_07385 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain APS55_07385 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily APS55_07385 IPR002318 Alanine-tRNA ligase, class IIc APS55_07385 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria APS55_07390 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07390 IPR014014 RNA helicase, DEAD-box type, Q motif APS55_07390 IPR030881 DEAD-box ATP-dependent RNA helicase CshB APS55_07390 IPR001650 Helicase, C-terminal APS55_07390 IPR014001 Helicase superfamily 1/2, ATP-binding domain APS55_07390 IPR011545 DEAD/DEAH box helicase domain APS55_07395 IPR001667 DDH domain APS55_07395 IPR038763 DHH phosphoesterase superfamily APS55_07395 IPR003156 DHHA1 domain APS55_07400 IPR003849 Preprotein translocase YajC APS55_07405 IPR004605 DNA helicase, Holliday junction RuvB-type APS55_07405 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07405 IPR008824 RuvB-like P-loop domain APS55_07405 IPR008823 RuvB C-terminal winged helix domain APS55_07405 IPR041445 RuvB, AAA lid domain APS55_07405 IPR003593 AAA+ ATPase domain APS55_07405 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_07405 IPR036390 Winged helix DNA-binding domain superfamily APS55_07410 IPR011114 Holliday junction DNA helicase RuvA, C-terminal APS55_07410 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial APS55_07410 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 APS55_07410 IPR012340 Nucleic acid-binding, OB-fold APS55_07410 IPR000085 Bacterial DNA recombination protein RuvA APS55_07410 IPR010994 RuvA domain 2-like APS55_07410 IPR036267 RuvA, C-terminal domain superfamily APS55_07415 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APS55_07415 IPR020568 Ribosomal protein S5 domain 2-type fold APS55_07415 IPR037198 MutL, C-terminal domain superfamily APS55_07415 IPR042121 MutL, C-terminal domain, regulatory subdomain APS55_07415 IPR042120 MutL, C-terminal domain, dimerisation subdomain APS55_07415 IPR020667 DNA mismatch repair protein, MutL APS55_07415 IPR002099 DNA mismatch repair protein family, N-terminal APS55_07415 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms APS55_07415 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APS55_07415 IPR014762 DNA mismatch repair, conserved site APS55_07415 IPR014790 MutL, C-terminal, dimerisation APS55_07415 IPR013507 DNA mismatch repair protein, S5 domain 2-like APS55_07420 IPR036678 MutS, connector domain superfamily APS55_07420 IPR007695 DNA mismatch repair protein MutS-like, N-terminal APS55_07420 IPR017261 DNA mismatch repair protein MutS/MSH APS55_07420 IPR000432 DNA mismatch repair protein MutS, C-terminal APS55_07420 IPR007861 DNA mismatch repair protein MutS, clamp APS55_07420 IPR007696 DNA mismatch repair protein MutS, core APS55_07420 IPR016151 DNA mismatch repair protein MutS, N-terminal APS55_07420 IPR036187 DNA mismatch repair protein MutS, core domain superfamily APS55_07420 IPR007860 DNA mismatch repair protein MutS, connector domain APS55_07420 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07420 IPR005748 DNA mismatch repair protein MutS APS55_07425 IPR029052 Metallo-dependent phosphatase-like APS55_07425 IPR005235 Metallophosphoesterase, YmdB-like APS55_07430 IPR022711 Ribonuclease Y, N-terminal APS55_07430 IPR036612 K Homology domain, type 1 superfamily APS55_07430 IPR004088 K Homology domain, type 1 APS55_07430 IPR004087 K Homology domain APS55_07430 IPR006675 HDIG domain APS55_07430 IPR017705 Ribonuclease Y APS55_07430 IPR006674 HD domain APS55_07430 IPR003607 HD/PDEase domain APS55_07435 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface APS55_07435 IPR023400 DNA recombination and repair protein RecA, C-terminal APS55_07435 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain APS55_07435 IPR003593 AAA+ ATPase domain APS55_07435 IPR013765 DNA recombination and repair protein RecA APS55_07435 IPR020584 DNA recombination/repair protein RecA, conserved site APS55_07435 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07440 IPR008135 Competence-induced protein CinA APS55_07440 IPR001453 MoaB/Mog domain APS55_07440 IPR036425 MoaB/Mog-like domain superfamily APS55_07440 IPR041424 CinA, KH domain APS55_07440 IPR008136 CinA, C-terminal APS55_07440 IPR036653 CinA-like, C-terminal APS55_07445 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase APS55_07445 IPR000462 CDP-alcohol phosphatidyltransferase APS55_07450 IPR025194 Domain of unknown function DUF4115 APS55_07450 IPR010982 Lambda repressor-like, DNA-binding domain superfamily APS55_07455 IPR011765 Peptidase M16, N-terminal APS55_07455 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like APS55_07455 IPR007863 Peptidase M16, C-terminal APS55_07465 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APS55_07465 IPR018313 Solute-binding protein family 3, conserved site APS55_07470 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07470 IPR017871 ABC transporter, conserved site APS55_07470 IPR003439 ABC transporter-like APS55_07470 IPR003593 AAA+ ATPase domain APS55_07470 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type APS55_07475 IPR035906 MetI-like superfamily APS55_07475 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_07475 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain APS55_07480 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07480 IPR025501 ATP binding protein MinD APS55_07480 IPR010223 ATP binding protein MinD, bacterial-type APS55_07480 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APS55_07485 IPR013033 Septum formation inhibitor MinC APS55_07485 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily APS55_07485 IPR005526 Septum formation inhibitor MinC, C-terminal APS55_07485 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal APS55_07495 IPR007221 Rod shape-determining protein MreC APS55_07495 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 APS55_07495 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 APS55_07500 IPR004753 Cell shape determining protein MreB APS55_07505 IPR013221 Mur ligase, central APS55_07505 IPR018109 Folylpolyglutamate synthetase, conserved site APS55_07505 IPR036615 Mur ligase, C-terminal domain superfamily APS55_07505 IPR036565 Mur-like, catalytic domain superfamily APS55_07505 IPR004101 Mur ligase, C-terminal APS55_07505 IPR001645 Folylpolyglutamate synthetase APS55_07510 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site APS55_07510 IPR002300 Aminoacyl-tRNA synthetase, class Ia APS55_07510 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_07510 IPR002303 Valine-tRNA ligase APS55_07510 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding APS55_07510 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain APS55_07510 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily APS55_07510 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding APS55_07510 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm APS55_07510 IPR033705 Valyl tRNA synthetase, anticodon-binding domain APS55_07510 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm APS55_07515 IPR036249 Thioredoxin-like superfamily APS55_07515 IPR013740 Redoxin APS55_07515 IPR002065 Thiol peroxidase Tpx APS55_07515 IPR013766 Thioredoxin domain APS55_07515 IPR018219 Thiol peroxidase conserved site APS55_07520 IPR004114 THUMP domain APS55_07520 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_07520 IPR003720 tRNA sulfurtransferase ThiI APS55_07520 IPR020536 Thil, AANH domain APS55_07525 IPR015424 Pyridoxal phosphate-dependent transferase APS55_07525 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 APS55_07525 IPR015421 Pyridoxal phosphate-dependent transferase, major domain APS55_07525 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APS55_07525 IPR016454 Cysteine desulfurase APS55_07525 IPR000192 Aminotransferase class V domain APS55_07530 IPR010379 Septation ring formation regulator EzrA APS55_07535 IPR003018 GAF domain APS55_07535 IPR000614 Free Met sulfoxide reductase conserved site APS55_07535 IPR029016 GAF-like domain superfamily APS55_07540 IPR036986 RNA-binding S4 domain superfamily APS55_07540 IPR022801 Ribosomal protein S4/S9 APS55_07540 IPR002942 RNA-binding S4 domain APS55_07540 IPR001912 Ribosomal protein S4/S9, N-terminal APS55_07540 IPR005709 Ribosomal protein S4, bacterial-type APS55_07540 IPR018079 Ribosomal protein S4, conserved site APS55_07550 IPR003593 AAA+ ATPase domain APS55_07550 IPR008824 RuvB-like P-loop domain APS55_07550 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07550 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal APS55_07550 IPR032423 AAA C-terminal domain APS55_07550 IPR021886 MgsA AAA+ ATPase C-terminal APS55_07560 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_07560 IPR006015 Universal stress protein A family APS55_07560 IPR006016 UspA APS55_07570 IPR017926 Glutamine amidotransferase APS55_07570 IPR001674 GMP synthase, C-terminal APS55_07570 IPR025777 GMP synthetase ATP pyrophosphatase domain APS55_07570 IPR029062 Class I glutamine amidotransferase-like APS55_07570 IPR011257 DNA glycosylase APS55_07570 IPR000182 GNAT domain APS55_07570 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APS55_07570 IPR005019 Methyladenine glycosylase APS55_07570 IPR016181 Acyl-CoA N-acyltransferase APS55_07575 IPR005905 D-alanine--D-alanine ligase APS55_07575 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site APS55_07575 IPR011127 D-alanine--D-alanine ligase, N-terminal domain APS55_07575 IPR016185 Pre-ATP-grasp domain superfamily APS55_07575 IPR013815 ATP-grasp fold, subdomain 1 APS55_07575 IPR011761 ATP-grasp fold APS55_07575 IPR011095 D-alanine--D-alanine ligase, C-terminal APS55_07585 IPR003593 AAA+ ATPase domain APS55_07585 IPR003439 ABC transporter-like APS55_07585 IPR017871 ABC transporter, conserved site APS55_07585 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07590 IPR000524 Transcription regulator HTH, GntR APS55_07590 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APS55_07590 IPR011663 UbiC transcription regulator-associated APS55_07590 IPR036388 Winged helix-like DNA-binding domain superfamily APS55_07590 IPR036390 Winged helix DNA-binding domain superfamily APS55_07595 IPR004872 Lipoprotein NlpA family APS55_07600 IPR000515 ABC transporter type 1, transmembrane domain MetI-like APS55_07600 IPR035906 MetI-like superfamily APS55_07605 IPR017871 ABC transporter, conserved site APS55_07605 IPR018449 NIL domain APS55_07605 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain APS55_07605 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal APS55_07605 IPR003439 ABC transporter-like APS55_07605 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07605 IPR003593 AAA+ ATPase domain APS55_07610 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA APS55_07610 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB APS55_07610 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site APS55_07620 IPR004753 Cell shape determining protein MreB APS55_07625 IPR036968 Enolpyruvate transferase domain superfamily APS55_07625 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase APS55_07625 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta APS55_07625 IPR001986 Enolpyruvate transferase domain APS55_07635 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily APS55_07635 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal APS55_07635 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain APS55_07635 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit APS55_07635 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal APS55_07640 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain APS55_07640 IPR003593 AAA+ ATPase domain APS55_07640 IPR005722 ATP synthase, F1 complex, beta subunit APS55_07640 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site APS55_07640 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain APS55_07640 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily APS55_07640 IPR027417 P-loop containing nucleoside triphosphate hydrolase APS55_07640 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal APS55_07645 IPR000131 ATP synthase, F1 complex, gamma subunit APS55_07645 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily