locus-tag class description APS55_00015 PF00005 ABC transporter APS55_00020 PF03180 NLPA lipoprotein APS55_00025 PF00528 Binding-protein-dependent transport system inner membrane component APS55_00030 PF09383 NIL domain APS55_00030 PF00005 ABC transporter APS55_00035 PF01098 Cell cycle protein APS55_00050 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APS55_00060 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APS55_00060 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain APS55_00065 PF02874 ATP synthase alpha/beta family, beta-barrel domain APS55_00065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APS55_00070 PF00231 ATP synthase APS55_00075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APS55_00075 PF00306 ATP synthase alpha/beta chain, C terminal domain APS55_00075 PF02874 ATP synthase alpha/beta family, beta-barrel domain APS55_00080 PF00213 ATP synthase delta (OSCP) subunit APS55_00085 PF00430 ATP synthase B/B' CF(0) APS55_00090 PF00137 ATP synthase subunit C APS55_00095 PF00119 ATP synthase A chain APS55_00105 PF00464 Serine hydroxymethyltransferase APS55_00110 PF01300 Telomere recombination APS55_00110 PF03481 Putative GTP-binding controlling metal-binding APS55_00115 PF05175 Methyltransferase small domain APS55_00115 PF17827 PrmC N-terminal domain APS55_00120 PF00472 RF-1 domain APS55_00120 PF03462 PCRF domain APS55_00125 PF00265 Thymidine kinase APS55_00130 PF08353 Domain of unknown function (DUF1727) APS55_00130 PF08245 Mur ligase middle domain APS55_00135 PF07685 CobB/CobQ-like glutamine amidotransferase domain APS55_00140 PF00144 Beta-lactamase APS55_00145 PF00005 ABC transporter APS55_00145 PF00664 ABC transporter transmembrane region APS55_00150 PF00005 ABC transporter APS55_00150 PF00664 ABC transporter transmembrane region APS55_00165 PF00857 Isochorismatase family APS55_00175 PF06993 Protein of unknown function (DUF1304) APS55_00350 PF01555 DNA methylase APS55_00400 PF01695 IstB-like ATP binding protein APS55_00410 PF00436 Single-strand binding protein family APS55_00465 PF00717 Peptidase S24-like APS55_00465 PF01726 LexA DNA binding domain APS55_00530 PF01464 Transglycosylase SLT domain APS55_00545 PF13333 Integrase core domain APS55_00545 PF00665 Integrase core domain APS55_00560 PF08659 KR domain APS55_00560 PF00698 Acyl transferase domain APS55_00560 PF08240 Alcohol dehydrogenase GroES-like domain APS55_00560 PF14765 Polyketide synthase dehydratase APS55_00560 PF00550 Phosphopantetheine attachment site APS55_00565 PF14552 Tautomerase enzyme APS55_00570 PF01336 OB-fold nucleic acid binding domain APS55_00570 PF00152 tRNA synthetases class II (D, K and N) APS55_00575 PF02525 Flavodoxin-like fold APS55_00580 PF13276 HTH-like domain APS55_00580 PF00665 Integrase core domain APS55_00580 PF13333 Integrase core domain APS55_00600 PF06800 Sugar transport protein APS55_00610 PF07690 Major Facilitator Superfamily APS55_00625 PF02705 K+ potassium transporter APS55_00630 PF00155 Aminotransferase class I and II APS55_00650 PF01476 LysM domain APS55_00650 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APS55_00655 PF01380 SIS domain APS55_00660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APS55_00660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APS55_00660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APS55_00660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APS55_00665 PF07949 YbbR-like protein APS55_00670 PF02457 DisA bacterial checkpoint controller nucleotide-binding APS55_00680 PF00999 Sodium/hydrogen exchanger family APS55_00685 PF01565 FAD binding domain APS55_00685 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APS55_00690 PF02811 PHP domain APS55_00690 PF14579 Helix-hairpin-helix motif APS55_00690 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APS55_00690 PF07733 Bacterial DNA polymerase III alpha NTPase domain APS55_00690 PF00929 Exonuclease APS55_00690 PF11490 DNA polymerase III polC-type N-terminus II APS55_00690 PF14480 DNA polymerase III polC-type N-terminus I APS55_00700 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APS55_00705 PF01515 Phosphate acetyl/butaryl transferase APS55_00710 PF03167 Uracil DNA glycosylase superfamily APS55_00715 PF01668 SmpB protein APS55_00720 PF00773 RNB domain APS55_00720 PF08206 Ribonuclease B OB domain APS55_00720 PF17876 Cold shock domain APS55_00720 PF00575 S1 RNA binding domain APS55_00725 PF03840 Preprotein translocase SecG subunit APS55_00730 PF00654 Voltage gated chloride channel APS55_00735 PF03952 Enolase, N-terminal domain APS55_00735 PF00113 Enolase, C-terminal TIM barrel domain APS55_00740 PF00121 Triosephosphate isomerase APS55_00745 PF00162 Phosphoglycerate kinase APS55_00750 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APS55_00750 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APS55_00760 PF00574 Clp protease APS55_00765 PF10298 WhiA N-terminal LAGLIDADG-like domain APS55_00765 PF14527 WhiA LAGLIDADG-like domain APS55_00765 PF02650 WhiA C-terminal HTH domain APS55_00770 PF01933 Uncharacterised protein family UPF0052 APS55_00775 PF17755 UvrA DNA-binding domain APS55_00775 PF00005 ABC transporter APS55_00775 PF17760 UvrA interaction domain APS55_00780 PF00271 Helicase conserved C-terminal domain APS55_00780 PF04851 Type III restriction enzyme, res subunit APS55_00780 PF02151 UvrB/uvrC motif APS55_00780 PF12344 Ultra-violet resistance protein B APS55_00780 PF17757 UvrB interaction domain APS55_00785 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS55_00790 PF00483 Nucleotidyl transferase APS55_00795 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APS55_00795 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APS55_00800 PF01790 Prolipoprotein diacylglyceryl transferase APS55_00805 PF02603 HPr Serine kinase N terminus APS55_00805 PF07475 HPr Serine kinase C-terminal domain APS55_00810 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV APS55_00815 PF04024 PspC domain APS55_00820 PF17820 PDZ domain APS55_00825 PF03462 PCRF domain APS55_00825 PF00472 RF-1 domain APS55_00830 PF01043 SecA preprotein cross-linking domain APS55_00830 PF07516 SecA Wing and Scaffold domain APS55_00830 PF07517 SecA DEAD-like domain APS55_00840 PF00271 Helicase conserved C-terminal domain APS55_00840 PF04851 Type III restriction enzyme, res subunit APS55_00845 PF01205 Uncharacterized protein family UPF0029 APS55_00845 PF09186 Domain of unknown function (DUF1949) APS55_00850 PF00953 Glycosyl transferase family 4 APS55_00855 PF00118 TCP-1/cpn60 chaperonin family APS55_00860 PF00166 Chaperonin 10 Kd subunit APS55_00865 PF06971 Putative DNA-binding protein N-terminus APS55_00865 PF02629 CoA binding domain APS55_00870 PF00005 ABC transporter APS55_00870 PF16326 ABC transporter C-terminal domain APS55_00870 PF12848 ABC transporter APS55_00875 PF00814 Glycoprotease family APS55_00885 PF00814 Glycoprotease family APS55_00895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APS55_00900 PF06156 Initiation control protein YabA APS55_00905 PF09115 DNA polymerase III, delta subunit, C terminal APS55_00910 PF06153 Cyclic-di-AMP receptor APS55_00915 PF02223 Thymidylate kinase APS55_00925 PF13662 Toprim domain APS55_00925 PF02132 RecR protein APS55_00930 PF02575 YbaB/EbfC DNA-binding family APS55_00935 PF12169 DNA polymerase III subunits gamma and tau domain III APS55_00940 PF14437 MafB19-like deaminase APS55_00945 PF05175 Methyltransferase small domain APS55_00950 PF00462 Glutaredoxin APS55_00955 PF02867 Ribonucleotide reductase, barrel domain APS55_00955 PF00317 Ribonucleotide reductase, all-alpha domain APS55_00955 PF08343 Ribonucleotide reductase N-terminal APS55_00960 PF00268 Ribonucleotide reductase, small chain APS55_00965 PF03706 Lysylphosphatidylglycerol synthase TM region APS55_00965 PF09924 Uncharacterised conserved protein (DUF2156) APS55_00970 PF16320 Ribosomal protein L7/L12 dimerisation domain APS55_00970 PF00542 Ribosomal protein L7/L12 C-terminal domain APS55_00975 PF00466 Ribosomal protein L10 APS55_00980 PF00687 Ribosomal protein L1p/L10e family APS55_00985 PF00298 Ribosomal protein L11, RNA binding domain APS55_00985 PF03946 Ribosomal protein L11, N-terminal domain APS55_00990 PF02357 Transcription termination factor nusG APS55_00990 PF00467 KOW motif APS55_00995 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APS55_01000 PF00471 Ribosomal protein L33 APS55_01010 PF05991 YacP-like NYN domain APS55_01015 PF08032 RNA 2'-O ribose methyltransferase substrate binding APS55_01015 PF00588 SpoU rRNA Methylase family APS55_01020 PF00636 Ribonuclease III domain APS55_01025 PF01406 tRNA synthetases class I (C) catalytic domain APS55_01025 PF09190 DALR domain APS55_01030 PF00749 tRNA synthetases class I (E and Q), catalytic domain APS55_01040 PF18073 Rubredoxin metal binding domain APS55_01045 PF00692 dUTPase APS55_01050 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APS55_01055 PF03051 Peptidase C1-like family APS55_01060 PF00300 Histidine phosphatase superfamily (branch 1) APS55_01065 PF00892 EamA-like transporter family APS55_01070 PF03816 Cell envelope-related transcriptional attenuator domain APS55_01090 PF08544 GHMP kinases C terminal APS55_01090 PF00288 GHMP kinases N terminal domain APS55_01095 PF10263 SprT-like family APS55_01100 PF00575 S1 RNA binding domain APS55_01100 PF16921 Tex protein YqgF-like domain APS55_01100 PF09371 Tex-like protein N-terminal domain APS55_01100 PF17674 HHH domain APS55_01110 PF02540 NAD synthase APS55_01115 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain APS55_01115 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain APS55_01115 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APS55_01120 PF03808 Glycosyl transferase WecB/TagA/CpsF family APS55_01125 PF00392 Bacterial regulatory proteins, gntR family APS55_01125 PF07702 UTRA domain APS55_01130 PF14748 Pyrroline-5-carboxylate reductase dimerisation APS55_01130 PF03807 NADP oxidoreductase coenzyme F420-dependent APS55_01145 PF00854 POT family APS55_01185 PF01336 OB-fold nucleic acid binding domain APS55_01185 PF00152 tRNA synthetases class II (D, K and N) APS55_01190 PF01207 Dihydrouridine synthase (Dus) APS55_01195 PF01430 Hsp33 protein APS55_01200 PF01434 Peptidase family M41 APS55_01200 PF00004 ATPase family associated with various cellular activities (AAA) APS55_01200 PF06480 FtsH Extracellular APS55_01200 PF17862 AAA+ lid domain APS55_01205 PF01171 PP-loop family APS55_01205 PF00156 Phosphoribosyl transferase domain APS55_01205 PF11734 TilS substrate C-terminal domain APS55_01210 PF01171 PP-loop family APS55_01210 PF11734 TilS substrate C-terminal domain APS55_01215 PF00575 S1 RNA binding domain APS55_01225 PF01479 S4 domain APS55_01230 PF14667 Polysaccharide biosynthesis C-terminal domain APS55_01230 PF01943 Polysaccharide biosynthesis protein APS55_01235 PF17757 UvrB interaction domain APS55_01235 PF00270 DEAD/DEAH box helicase APS55_01235 PF00271 Helicase conserved C-terminal domain APS55_01235 PF03461 TRCF domain APS55_01235 PF02559 CarD-like/TRCF domain APS55_01240 PF01195 Peptidyl-tRNA hydrolase APS55_01245 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APS55_01245 PF00056 lactate/malate dehydrogenase, NAD binding domain APS55_01255 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system APS55_01265 PF01168 Alanine racemase, N-terminal domain APS55_01265 PF00842 Alanine racemase, C-terminal domain APS55_01270 PF00270 DEAD/DEAH box helicase APS55_01270 PF00271 Helicase conserved C-terminal domain APS55_01275 PF02875 Mur ligase family, glutamate ligase domain APS55_01275 PF08245 Mur ligase middle domain APS55_01275 PF01225 Mur ligase family, catalytic domain APS55_01285 PF01197 Ribosomal protein L31 APS55_01290 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APS55_01295 PF06418 CTP synthase N-terminus APS55_01295 PF00117 Glutamine amidotransferase class-I APS55_01300 PF05066 HB1, ASXL, restriction endonuclease HTH domain APS55_01310 PF01966 HD domain APS55_01325 PF14572 Phosphoribosyl synthetase-associated domain APS55_01325 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APS55_01330 PF00483 Nucleotidyl transferase APS55_01330 PF00132 Bacterial transferase hexapeptide (six repeats) APS55_01335 PF00156 Phosphoribosyl transferase domain APS55_01335 PF09182 Bacterial purine repressor, N-terminal APS55_01340 PF00288 GHMP kinases N terminal domain APS55_01340 PF08544 GHMP kinases C terminal APS55_01345 PF06257 Biofilm formation stimulator VEG APS55_01350 PF00398 Ribosomal RNA adenine dimethylase APS55_01355 PF01751 Toprim domain APS55_01355 PF13331 Domain of unknown function (DUF4093) APS55_01360 PF01026 TatD related DNase APS55_01365 PF08264 Anticodon-binding domain of tRNA APS55_01365 PF09334 tRNA synthetases class I (M) APS55_01365 PF01588 Putative tRNA binding domain APS55_01370 PF01904 Protein of unknown function DUF72 APS55_01375 PF02146 Sir2 family APS55_01385 PF00368 Hydroxymethylglutaryl-coenzyme A reductase APS55_01390 PF02541 Ppx/GppA phosphatase family APS55_01395 PF00579 tRNA synthetases class I (W and Y) APS55_01400 PF13538 UvrD-like helicase C-terminal domain APS55_01405 PF13090 Polyphosphate kinase C-terminal domain 2 APS55_01405 PF02503 Polyphosphate kinase middle domain APS55_01405 PF17941 Polyphosphate kinase C-terminal domain 1 APS55_01405 PF13089 Polyphosphate kinase N-terminal domain APS55_01435 PF00579 tRNA synthetases class I (W and Y) APS55_01435 PF01479 S4 domain APS55_01445 PF07690 Major Facilitator Superfamily APS55_01455 PF00535 Glycosyl transferase family 2 APS55_01470 PF00300 Histidine phosphatase superfamily (branch 1) APS55_01475 PF01594 AI-2E family transporter APS55_01505 PF07943 Penicillin-binding protein 5, C-terminal domain APS55_01505 PF00768 D-alanyl-D-alanine carboxypeptidase APS55_01510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS55_01510 PF16736 Single Cache-like APS55_01510 PF00512 His Kinase A (phospho-acceptor) domain APS55_01510 PF00989 PAS fold APS55_01515 PF00486 Transcriptional regulatory protein, C terminal APS55_01515 PF00072 Response regulator receiver domain APS55_01520 PF00571 CBS domain APS55_01520 PF00478 IMP dehydrogenase / GMP reductase domain APS55_01530 PF06071 Protein of unknown function (DUF933) APS55_01530 PF01926 50S ribosome-binding GTPase APS55_01535 PF06107 Bacterial protein of unknown function (DUF951) APS55_01540 PF17762 HTH domain found in ParB protein APS55_01540 PF02195 ParB-like nuclease domain APS55_01545 PF13614 AAA domain APS55_01550 PF02527 rRNA small subunit methyltransferase G APS55_01555 PF00860 Permease family APS55_01560 PF01773 Na+ dependent nucleoside transporter N-terminus APS55_01560 PF07662 Na+ dependent nucleoside transporter C-terminus APS55_01565 PF01676 Metalloenzyme superfamily APS55_01595 PF13333 Integrase core domain APS55_01595 PF13276 HTH-like domain APS55_01595 PF00665 Integrase core domain APS55_01620 PF03466 LysR substrate binding domain APS55_01620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS55_01640 PF13673 Acetyltransferase (GNAT) domain APS55_01655 PF01938 TRAM domain APS55_01655 PF05958 tRNA (Uracil-5-)-methyltransferase APS55_01670 PF00534 Glycosyl transferases group 1 APS55_01675 PF13439 Glycosyltransferase Family 4 APS55_01675 PF00534 Glycosyl transferases group 1 APS55_01705 PF13350 Tyrosine phosphatase family APS55_01720 PF13333 Integrase core domain APS55_01720 PF00665 Integrase core domain APS55_01735 PF00206 Lyase APS55_01735 PF10397 Adenylosuccinate lyase C-terminus APS55_01740 PF00709 Adenylosuccinate synthetase APS55_01745 PF00478 IMP dehydrogenase / GMP reductase domain APS55_01750 PF04203 Sortase domain APS55_01755 PF01180 Dihydroorotate dehydrogenase APS55_01760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APS55_01760 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APS55_01760 PF02142 MGS-like domain APS55_01765 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APS55_01765 PF00117 Glutamine amidotransferase class-I APS55_01770 PF01979 Amidohydrolase family APS55_01775 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APS55_01775 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APS55_01780 PF01476 LysM domain APS55_01780 PF06725 3D domain APS55_01790 PF03553 Na+/H+ antiporter family APS55_01795 PF00085 Thioredoxin APS55_01800 PF03741 Integral membrane protein TerC family APS55_01805 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APS55_01805 PF13457 GW (Gly-Tryp) dipeptide domain APS55_01815 PF00877 NlpC/P60 family APS55_01815 PF08239 Bacterial SH3 domain APS55_01815 PF01476 LysM domain APS55_01820 PF00300 Histidine phosphatase superfamily (branch 1) APS55_01830 PF00884 Sulfatase APS55_01840 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS55_01850 PF01156 Inosine-uridine preferring nucleoside hydrolase APS55_01860 PF03960 ArsC family APS55_01865 PF02872 5'-nucleotidase, C-terminal domain APS55_01865 PF00149 Calcineurin-like phosphoesterase APS55_01870 PF01966 HD domain APS55_01870 PF00013 KH domain APS55_01870 PF12072 Domain of unknown function (DUF3552) APS55_01885 PF00909 Ammonium Transporter Family APS55_01905 PF00849 RNA pseudouridylate synthase APS55_01905 PF01479 S4 domain APS55_01910 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase APS55_01910 PF09363 XFP C-terminal domain APS55_01910 PF09364 XFP N-terminal domain APS55_01915 PF00392 Bacterial regulatory proteins, gntR family APS55_01915 PF07702 UTRA domain APS55_01930 PF04073 Aminoacyl-tRNA editing domain APS55_01935 PF01966 HD domain APS55_01950 PF00248 Aldo/keto reductase family APS55_01960 PF00464 Serine hydroxymethyltransferase APS55_01975 PF02632 BioY family APS55_01985 PF02627 Carboxymuconolactone decarboxylase family APS55_01995 PF13411 MerR HTH family regulatory protein APS55_02005 PF02237 Biotin protein ligase C terminal domain APS55_02005 PF03099 Biotin/lipoate A/B protein ligase family APS55_02005 PF08279 HTH domain APS55_02015 PF13411 MerR HTH family regulatory protein APS55_02020 PF00248 Aldo/keto reductase family APS55_02030 PF00005 ABC transporter APS55_02060 PF13520 Amino acid permease APS55_02065 PF00107 Zinc-binding dehydrogenase APS55_02065 PF13823 Alcohol dehydrogenase GroES-associated APS55_02065 PF08240 Alcohol dehydrogenase GroES-like domain APS55_02070 PF13333 Integrase core domain APS55_02070 PF00665 Integrase core domain APS55_02070 PF13276 HTH-like domain APS55_02110 PF03551 Transcriptional regulator PadR-like family APS55_02115 PF08244 Glycosyl hydrolases family 32 C terminal APS55_02115 PF00251 Glycosyl hydrolases family 32 N-terminal domain APS55_02120 PF00480 ROK family APS55_02125 PF00342 Phosphoglucose isomerase APS55_02130 PF00480 ROK family APS55_02150 PF13411 MerR HTH family regulatory protein APS55_02160 PF13302 Acetyltransferase (GNAT) domain APS55_02190 PF13333 Integrase core domain APS55_02190 PF00665 Integrase core domain APS55_02255 PF00011 Hsp20/alpha crystallin family APS55_02260 PF00011 Hsp20/alpha crystallin family APS55_02270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS55_02270 PF00512 His Kinase A (phospho-acceptor) domain APS55_02275 PF00486 Transcriptional regulatory protein, C terminal APS55_02275 PF00072 Response regulator receiver domain APS55_02285 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase APS55_02290 PF00535 Glycosyl transferase family 2 APS55_02310 PF03471 Transporter associated domain APS55_02310 PF00571 CBS domain APS55_02310 PF01595 Cyclin M transmembrane N-terminal domain APS55_02315 PF07972 NrdI Flavodoxin like APS55_02320 PF07690 Major Facilitator Superfamily APS55_02325 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APS55_02325 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APS55_02330 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APS55_02330 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APS55_02335 PF07731 Multicopper oxidase APS55_02335 PF07732 Multicopper oxidase APS55_02340 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APS55_02340 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APS55_02345 PF00202 Aminotransferase class-III APS55_02350 PF00696 Amino acid kinase family APS55_02355 PF01960 ArgJ family APS55_02360 PF02774 Semialdehyde dehydrogenase, dimerisation domain APS55_02360 PF01118 Semialdehyde dehydrogenase, NAD binding domain APS55_02365 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APS55_02365 PF00117 Glutamine amidotransferase class-I APS55_02370 PF02142 MGS-like domain APS55_02370 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APS55_02370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APS55_02375 PF00375 Sodium:dicarboxylate symporter family APS55_02395 PF00108 Thiolase, N-terminal domain APS55_02395 PF02803 Thiolase, C-terminal domain APS55_02410 PF03734 L,D-transpeptidase catalytic domain APS55_02425 PF03070 TENA/THI-4/PQQC family APS55_02430 PF08543 Phosphomethylpyrimidine kinase APS55_02435 PF02581 Thiamine monophosphate synthase APS55_02440 PF02110 Hydroxyethylthiazole kinase family APS55_02450 PF13419 Haloacid dehalogenase-like hydrolase APS55_02455 PF03636 Glycosyl hydrolase family 65, N-terminal domain APS55_02455 PF03632 Glycosyl hydrolase family 65 central catalytic domain APS55_02455 PF03633 Glycosyl hydrolase family 65, C-terminal domain APS55_02470 PF00106 short chain dehydrogenase APS55_02475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APS55_02475 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS55_02480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APS55_02480 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS55_02490 PF00582 Universal stress protein family APS55_02495 PF01566 Natural resistance-associated macrophage protein APS55_02500 PF13382 Adenine deaminase C-terminal domain APS55_02500 PF01979 Amidohydrolase family APS55_02525 PF13180 PDZ domain APS55_02530 PF00753 Metallo-beta-lactamase superfamily APS55_02545 PF13426 PAS domain APS55_02545 PF00672 HAMP domain APS55_02545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS55_02545 PF00512 His Kinase A (phospho-acceptor) domain APS55_02545 PF14827 Double sensory domain of two-component sensor kinase APS55_02550 PF00072 Response regulator receiver domain APS55_02550 PF00486 Transcriptional regulatory protein, C terminal APS55_02565 PF01555 DNA methylase APS55_02575 PF00999 Sodium/hydrogen exchanger family APS55_02595 PF00999 Sodium/hydrogen exchanger family APS55_02605 PF03477 ATP cone domain APS55_02605 PF13597 Anaerobic ribonucleoside-triphosphate reductase APS55_02615 PF00005 ABC transporter APS55_02620 PF01458 Uncharacterized protein family (UPF0051) APS55_02625 PF00266 Aminotransferase class-V APS55_02635 PF01458 Uncharacterized protein family (UPF0051) APS55_02640 PF10415 Fumarase C C-terminus APS55_02640 PF00206 Lyase APS55_02650 PF13673 Acetyltransferase (GNAT) domain APS55_02655 PF01047 MarR family APS55_02660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APS55_02660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APS55_02665 PF00155 Aminotransferase class I and II APS55_02670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APS55_02675 PF01979 Amidohydrolase family APS55_02685 PF00772 DnaB-like helicase N terminal domain APS55_02685 PF03796 DnaB-like helicase C terminal domain APS55_02690 PF03948 Ribosomal protein L9, C-terminal domain APS55_02690 PF01281 Ribosomal protein L9, N-terminal domain APS55_02695 PF01368 DHH family APS55_02695 PF02272 DHHA1 domain APS55_02700 PF01084 Ribosomal protein S18 APS55_02705 PF00436 Single-strand binding protein family APS55_02710 PF01250 Ribosomal protein S6 APS55_02725 PF00521 DNA gyrase/topoisomerase IV, subunit A APS55_02725 PF03989 DNA gyrase C-terminal domain, beta-propeller APS55_02730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS55_02730 PF00986 DNA gyrase B subunit, carboxyl terminus APS55_02730 PF00204 DNA gyrase B APS55_02730 PF01751 Toprim domain APS55_02735 PF02463 RecF/RecN/SMC N terminal domain APS55_02745 PF00557 Metallopeptidase family M24 APS55_02745 PF01321 Creatinase/Prolidase N-terminal domain APS55_02750 PF00712 DNA polymerase III beta subunit, N-terminal domain APS55_02750 PF02767 DNA polymerase III beta subunit, central domain APS55_02750 PF02768 DNA polymerase III beta subunit, C-terminal domain APS55_02755 PF11638 DnaA N-terminal domain APS55_02755 PF08299 Bacterial dnaA protein helix-turn-helix APS55_02755 PF00308 Bacterial dnaA protein APS55_02760 PF00468 Ribosomal protein L34 APS55_02765 PF00825 Ribonuclease P APS55_02770 PF02096 60Kd inner membrane protein APS55_02775 PF14804 Jag N-terminus APS55_02775 PF01424 R3H domain APS55_02780 PF01926 50S ribosome-binding GTPase APS55_02780 PF12631 MnmE helical domain APS55_02780 PF10396 GTP-binding protein TrmE N-terminus APS55_02785 PF01134 Glucose inhibited division protein A APS55_02785 PF13932 GidA associated domain APS55_02795 PF10502 Signal peptidase, peptidase S26 APS55_02810 PF00202 Aminotransferase class-III APS55_02815 PF03051 Peptidase C1-like family APS55_02820 PF03051 Peptidase C1-like family APS55_02825 PF00764 Arginosuccinate synthase APS55_02830 PF00206 Lyase APS55_02830 PF14698 Argininosuccinate lyase C-terminal APS55_02835 PF00528 Binding-protein-dependent transport system inner membrane component APS55_02840 PF00005 ABC transporter APS55_02860 PF08267 Cobalamin-independent synthase, N-terminal domain APS55_02860 PF01717 Cobalamin-independent synthase, Catalytic domain APS55_02865 PF04204 Homoserine O-succinyltransferase APS55_02870 PF01053 Cys/Met metabolism PLP-dependent enzyme APS55_02875 PF01053 Cys/Met metabolism PLP-dependent enzyme APS55_02880 PF01842 ACT domain APS55_02880 PF00742 Homoserine dehydrogenase APS55_02880 PF03447 Homoserine dehydrogenase, NAD binding domain APS55_02890 PF00665 Integrase core domain APS55_02890 PF13333 Integrase core domain APS55_02905 PF13091 PLD-like domain APS55_02905 PF13396 Phospholipase_D-nuclease N-terminal APS55_02910 PF00156 Phosphoribosyl transferase domain APS55_02915 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APS55_02920 PF07690 Major Facilitator Superfamily APS55_02930 PF00665 Integrase core domain APS55_02930 PF13276 HTH-like domain APS55_02930 PF13333 Integrase core domain APS55_02950 PF08239 Bacterial SH3 domain APS55_02950 PF01520 N-acetylmuramoyl-L-alanine amidase APS55_02955 PF00005 ABC transporter APS55_02960 PF00950 ABC 3 transport family APS55_02975 PF08359 YsiA-like protein, C-terminal region APS55_02975 PF00440 Bacterial regulatory proteins, tetR family APS55_02980 PF06421 GTP-binding protein LepA C-terminus APS55_02980 PF00009 Elongation factor Tu GTP binding domain APS55_02980 PF00679 Elongation factor G C-terminus APS55_02985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APS55_02990 PF08240 Alcohol dehydrogenase GroES-like domain APS55_02990 PF00107 Zinc-binding dehydrogenase APS55_02995 PF00480 ROK family APS55_03000 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APS55_03005 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APS55_03010 PF00075 RNase H APS55_03020 PF00860 Permease family APS55_03025 PF00248 Aldo/keto reductase family APS55_03040 PF00324 Amino acid permease APS55_03045 PF00324 Amino acid permease APS55_03065 PF05067 Manganese containing catalase APS55_03070 PF12705 PD-(D/E)XK nuclease superfamily APS55_03075 PF12705 PD-(D/E)XK nuclease superfamily APS55_03075 PF00580 UvrD/REP helicase N-terminal domain APS55_03075 PF13361 UvrD-like helicase C-terminal domain APS55_03085 PF13732 Domain of unknown function (DUF4162) APS55_03085 PF00005 ABC transporter APS55_03090 PF00171 Aldehyde dehydrogenase family APS55_03090 PF00465 Iron-containing alcohol dehydrogenase APS55_03100 PF03601 Conserved hypothetical protein 698 APS55_03110 PF07690 Major Facilitator Superfamily APS55_03120 PF00005 ABC transporter APS55_03125 PF00528 Binding-protein-dependent transport system inner membrane component APS55_03130 PF17871 AAA lid domain APS55_03130 PF10431 C-terminal, D2-small domain, of ClpB protein APS55_03130 PF07724 AAA domain (Cdc48 subfamily) APS55_03130 PF00004 ATPase family associated with various cellular activities (AAA) APS55_03150 PF03949 Malic enzyme, NAD binding domain APS55_03150 PF00390 Malic enzyme, N-terminal domain APS55_03155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS55_03155 PF03466 LysR substrate binding domain APS55_03170 PF00665 Integrase core domain APS55_03170 PF13333 Integrase core domain APS55_03180 PF00497 Bacterial extracellular solute-binding proteins, family 3 APS55_03185 PF00005 ABC transporter APS55_03190 PF00528 Binding-protein-dependent transport system inner membrane component APS55_03195 PF00924 Mechanosensitive ion channel APS55_03200 PF00924 Mechanosensitive ion channel APS55_03215 PF12704 MacB-like periplasmic core domain APS55_03215 PF00005 ABC transporter APS55_03215 PF02687 FtsX-like permease family APS55_03245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APS55_03245 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS55_03260 PF00005 ABC transporter APS55_03285 PF03009 Glycerophosphoryl diester phosphodiesterase family APS55_03300 PF00665 Integrase core domain APS55_03300 PF13333 Integrase core domain APS55_03325 PF08544 GHMP kinases C terminal APS55_03325 PF00288 GHMP kinases N terminal domain APS55_03330 PF00291 Pyridoxal-phosphate dependent enzyme APS55_03330 PF14821 Threonine synthase N terminus APS55_03335 PF00742 Homoserine dehydrogenase APS55_03335 PF03447 Homoserine dehydrogenase, NAD binding domain APS55_03335 PF01842 ACT domain APS55_03355 PF00199 Catalase APS55_03355 PF06628 Catalase-related immune-responsive APS55_03365 PF02590 Predicted SPOUT methyltransferase APS55_03370 PF01381 Helix-turn-helix APS55_03390 PF02324 Glycosyl hydrolase family 70 APS55_03390 PF01473 Putative cell wall binding repeat APS55_03400 PF11838 ERAP1-like C-terminal domain APS55_03400 PF01433 Peptidase family M1 domain APS55_03405 PF00768 D-alanyl-D-alanine carboxypeptidase APS55_03405 PF07943 Penicillin-binding protein 5, C-terminal domain APS55_03410 PF00731 AIR carboxylase APS55_03415 PF02222 ATP-grasp domain APS55_03415 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APS55_03420 PF01259 SAICAR synthetase APS55_03435 PF00586 AIR synthase related protein, N-terminal domain APS55_03435 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APS55_03435 PF02769 AIR synthase related protein, C-terminal domain APS55_03440 PF13537 Glutamine amidotransferase domain APS55_03440 PF00156 Phosphoribosyl transferase domain APS55_03445 PF02769 AIR synthase related protein, C-terminal domain APS55_03445 PF00586 AIR synthase related protein, N-terminal domain APS55_03450 PF00551 Formyl transferase APS55_03455 PF02142 MGS-like domain APS55_03455 PF01808 AICARFT/IMPCHase bienzyme APS55_03460 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APS55_03460 PF02844 Phosphoribosylglycinamide synthetase, N domain APS55_03460 PF02843 Phosphoribosylglycinamide synthetase, C domain APS55_03470 PF07690 Major Facilitator Superfamily APS55_03480 PF02082 Transcriptional regulator APS55_03485 PF05368 NmrA-like family APS55_03505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APS55_03505 PF00205 Thiamine pyrophosphate enzyme, central domain APS55_03505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APS55_03525 PF13333 Integrase core domain APS55_03525 PF00665 Integrase core domain APS55_03545 PF07690 Major Facilitator Superfamily APS55_03555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APS55_03570 PF01965 DJ-1/PfpI family APS55_03580 PF00665 Integrase core domain APS55_03580 PF13333 Integrase core domain APS55_03590 PF00230 Major intrinsic protein APS55_03595 PF03306 Alpha-acetolactate decarboxylase APS55_03605 PF07563 Protein of unknown function (DUF1541) APS55_03625 PF07722 Peptidase C26 APS55_03630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APS55_03635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APS55_03645 PF00005 ABC transporter APS55_03655 PF04397 LytTr DNA-binding domain APS55_03655 PF00072 Response regulator receiver domain APS55_03680 PF00206 Lyase APS55_03680 PF10415 Fumarase C C-terminus APS55_03705 PF04011 LemA family APS55_03715 PF05525 Branched-chain amino acid transport protein APS55_03725 PF05525 Branched-chain amino acid transport protein APS55_03735 PF00817 impB/mucB/samB family APS55_03735 PF11799 impB/mucB/samB family C-terminal domain APS55_03735 PF11798 IMS family HHH motif APS55_03755 PF01566 Natural resistance-associated macrophage protein APS55_03760 PF03816 Cell envelope-related transcriptional attenuator domain APS55_03765 PF02706 Chain length determinant protein APS55_03770 PF13614 AAA domain APS55_03780 PF02397 Bacterial sugar transferase APS55_03785 PF13439 Glycosyltransferase Family 4 APS55_03785 PF00534 Glycosyl transferases group 1 APS55_03790 PF00535 Glycosyl transferase family 2 APS55_03810 PF07690 Major Facilitator Superfamily APS55_03810 PF00083 Sugar (and other) transporter APS55_03825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APS55_03835 PF02324 Glycosyl hydrolase family 70 APS55_03835 PF01473 Putative cell wall binding repeat APS55_03840 PF01473 Putative cell wall binding repeat APS55_03840 PF02324 Glycosyl hydrolase family 70 APS55_03850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APS55_03850 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS55_03860 PF00665 Integrase core domain APS55_03860 PF13333 Integrase core domain APS55_03870 PF13520 Amino acid permease APS55_03875 PF00324 Amino acid permease APS55_03880 PF00324 Amino acid permease APS55_03885 PF01047 MarR family APS55_03900 PF00005 ABC transporter APS55_03910 PF03006 Haemolysin-III related APS55_03915 PF00893 Small Multidrug Resistance protein APS55_03930 PF00877 NlpC/P60 family APS55_03930 PF01476 LysM domain APS55_03930 PF08239 Bacterial SH3 domain APS55_03955 PF13460 NAD(P)H-binding APS55_03960 PF12848 ABC transporter APS55_03960 PF00005 ABC transporter APS55_03985 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APS55_03985 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APS55_03985 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APS55_03985 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APS55_03990 PF00881 Nitroreductase family APS55_03995 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APS55_03995 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APS55_04000 PF00550 Phosphopantetheine attachment site APS55_04005 PF00698 Acyl transferase domain APS55_04015 PF00364 Biotin-requiring enzyme APS55_04020 PF07977 FabA-like domain APS55_04025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APS55_04025 PF02785 Biotin carboxylase C-terminal domain APS55_04025 PF00289 Biotin carboxylase, N-terminal domain APS55_04030 PF01039 Carboxyl transferase domain APS55_04035 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APS55_04050 PF07977 FabA-like domain APS55_04055 PF02801 Beta-ketoacyl synthase, C-terminal domain APS55_04055 PF00109 Beta-ketoacyl synthase, N-terminal domain APS55_04060 PF16363 GDP-mannose 4,6 dehydratase APS55_04065 PF00248 Aldo/keto reductase family APS55_04070 PF00892 EamA-like transporter family APS55_04080 PF03176 MMPL family APS55_04090 PF13520 Amino acid permease APS55_04095 PF00892 EamA-like transporter family APS55_04140 PF00313 'Cold-shock' DNA-binding domain APS55_04145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APS55_04145 PF00005 ABC transporter APS55_04150 PF00005 ABC transporter APS55_04150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APS55_04155 PF00528 Binding-protein-dependent transport system inner membrane component APS55_04160 PF00528 Binding-protein-dependent transport system inner membrane component APS55_04165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APS55_04170 PF02525 Flavodoxin-like fold APS55_04185 PF13276 HTH-like domain APS55_04185 PF13333 Integrase core domain APS55_04185 PF00665 Integrase core domain APS55_04190 PF08543 Phosphomethylpyrimidine kinase APS55_04200 PF14602 Hexapeptide repeat of succinyl-transferase APS55_04200 PF12464 Maltose acetyltransferase APS55_04205 PF02028 BCCT, betaine/carnitine/choline family transporter APS55_04210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APS55_04210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APS55_04215 PF00557 Metallopeptidase family M24 APS55_04225 PF07690 Major Facilitator Superfamily APS55_04230 PF05649 Peptidase family M13 APS55_04230 PF01431 Peptidase family M13 APS55_04235 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APS55_04240 PF00528 Binding-protein-dependent transport system inner membrane component APS55_04245 PF00571 CBS domain APS55_04245 PF00005 ABC transporter APS55_04260 PF07676 WD40-like Beta Propeller Repeat APS55_04260 PF00326 Prolyl oligopeptidase family APS55_04270 PF03180 NLPA lipoprotein APS55_04275 PF00005 ABC transporter APS55_04275 PF09383 NIL domain APS55_04280 PF00528 Binding-protein-dependent transport system inner membrane component APS55_04285 PF07687 Peptidase dimerisation domain APS55_04285 PF01546 Peptidase family M20/M25/M40 APS55_04300 PF00155 Aminotransferase class I and II APS55_04305 PF14010 Phosphoenolpyruvate carboxylase APS55_04310 PF07690 Major Facilitator Superfamily APS55_04320 PF01678 Diaminopimelate epimerase APS55_04325 PF00696 Amino acid kinase family APS55_04325 PF13840 ACT domain APS55_04330 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APS55_04330 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APS55_04335 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal APS55_04335 PF14602 Hexapeptide repeat of succinyl-transferase APS55_04335 PF00132 Bacterial transferase hexapeptide (six repeats) APS55_04340 PF07687 Peptidase dimerisation domain APS55_04340 PF01546 Peptidase family M20/M25/M40 APS55_04345 PF00701 Dihydrodipicolinate synthetase family APS55_04350 PF01113 Dihydrodipicolinate reductase, N-terminus APS55_04350 PF05173 Dihydrodipicolinate reductase, C-terminus APS55_04355 PF00155 Aminotransferase class I and II APS55_04360 PF01118 Semialdehyde dehydrogenase, NAD binding domain APS55_04360 PF02774 Semialdehyde dehydrogenase, dimerisation domain APS55_04365 PF01475 Ferric uptake regulator family APS55_04375 PF02574 Homocysteine S-methyltransferase APS55_04380 PF00324 Amino acid permease APS55_04385 PF10282 Lactonase, 7-bladed beta-propeller APS55_04400 PF02645 Uncharacterised protein, DegV family COG1307 APS55_04405 PF00230 Major intrinsic protein APS55_04415 PF07690 Major Facilitator Superfamily APS55_04425 PF00860 Permease family APS55_04430 PF00710 Asparaginase, N-terminal APS55_04430 PF17763 Glutaminase/Asparaginase C-terminal domain APS55_04440 PF00005 ABC transporter APS55_04455 PF13333 Integrase core domain APS55_04455 PF00665 Integrase core domain APS55_04475 PF00005 ABC transporter APS55_04480 PF09819 ABC-type cobalt transport system, permease component APS55_04485 PF07943 Penicillin-binding protein 5, C-terminal domain APS55_04485 PF00768 D-alanyl-D-alanine carboxypeptidase APS55_04495 PF13520 Amino acid permease APS55_04500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS55_04500 PF03466 LysR substrate binding domain APS55_04510 PF13276 HTH-like domain APS55_04510 PF00665 Integrase core domain APS55_04510 PF13333 Integrase core domain APS55_04535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APS55_04535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APS55_04540 PF00005 ABC transporter APS55_04540 PF09383 NIL domain APS55_04545 PF02653 Branched-chain amino acid transport system / permease component APS55_04555 PF13520 Amino acid permease APS55_04560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APS55_04565 PF12848 ABC transporter APS55_04565 PF00005 ABC transporter APS55_04575 PF00561 alpha/beta hydrolase fold APS55_04580 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal APS55_04580 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APS55_04580 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain APS55_04585 PF13344 Haloacid dehalogenase-like hydrolase APS55_04585 PF00293 NUDIX domain APS55_04590 PF00625 Guanylate kinase APS55_04605 PF01926 50S ribosome-binding GTPase APS55_04605 PF13167 GTP-binding GTPase N-terminal APS55_04605 PF16360 GTP-binding GTPase Middle Region APS55_04610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APS55_04615 PF00528 Binding-protein-dependent transport system inner membrane component APS55_04620 PF00528 Binding-protein-dependent transport system inner membrane component APS55_04620 PF12911 N-terminal TM domain of oligopeptide transport permease C APS55_04625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APS55_04625 PF00005 ABC transporter APS55_04630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APS55_04630 PF00005 ABC transporter APS55_04635 PF00300 Histidine phosphatase superfamily (branch 1) APS55_04640 PF13538 UvrD-like helicase C-terminal domain APS55_04645 PF00485 Phosphoribulokinase / Uridine kinase family APS55_04650 PF00958 GMP synthase C terminal domain APS55_04650 PF00117 Glutamine amidotransferase class-I APS55_04650 PF02540 NAD synthase APS55_04655 PF00171 Aldehyde dehydrogenase family APS55_04660 PF00696 Amino acid kinase family APS55_04665 PF00892 EamA-like transporter family APS55_04670 PF08240 Alcohol dehydrogenase GroES-like domain APS55_04670 PF00107 Zinc-binding dehydrogenase APS55_04675 PF00005 ABC transporter APS55_04680 PF00890 FAD binding domain APS55_04680 PF14537 Cytochrome c3 APS55_04690 PF00194 Eukaryotic-type carbonic anhydrase APS55_04695 PF00849 RNA pseudouridylate synthase APS55_04715 PF01545 Cation efflux family APS55_04745 PF01925 Sulfite exporter TauE/SafE APS55_04765 PF00324 Amino acid permease APS55_04770 PF01712 Deoxynucleoside kinase APS55_04775 PF02403 Seryl-tRNA synthetase N-terminal domain APS55_04775 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APS55_04820 PF05848 CtsR N-terminal HTH domain APS55_04820 PF17727 CtsR C-terminal dimerization domain APS55_04825 PF07724 AAA domain (Cdc48 subfamily) APS55_04825 PF17871 AAA lid domain APS55_04825 PF02861 Clp amino terminal domain, pathogenicity island component APS55_04825 PF00004 ATPase family associated with various cellular activities (AAA) APS55_04825 PF10431 C-terminal, D2-small domain, of ClpB protein APS55_04830 PF10385 RNA polymerase beta subunit external 1 domain APS55_04830 PF04560 RNA polymerase Rpb2, domain 7 APS55_04830 PF00562 RNA polymerase Rpb2, domain 6 APS55_04830 PF04561 RNA polymerase Rpb2, domain 2 APS55_04830 PF04563 RNA polymerase beta subunit APS55_04830 PF04565 RNA polymerase Rpb2, domain 3 APS55_04835 PF05000 RNA polymerase Rpb1, domain 4 APS55_04835 PF04998 RNA polymerase Rpb1, domain 5 APS55_04835 PF04997 RNA polymerase Rpb1, domain 1 APS55_04835 PF00623 RNA polymerase Rpb1, domain 2 APS55_04835 PF04983 RNA polymerase Rpb1, domain 3 APS55_04845 PF00164 Ribosomal protein S12/S23 APS55_04850 PF00177 Ribosomal protein S7p/S5e APS55_04855 PF03764 Elongation factor G, domain IV APS55_04855 PF03144 Elongation factor Tu domain 2 APS55_04855 PF00679 Elongation factor G C-terminus APS55_04855 PF14492 Elongation Factor G, domain II APS55_04855 PF00009 Elongation factor Tu GTP binding domain APS55_04860 PF00338 Ribosomal protein S10p/S20e APS55_04865 PF00297 Ribosomal protein L3 APS55_04870 PF00573 Ribosomal protein L4/L1 family APS55_04875 PF00276 Ribosomal protein L23 APS55_04880 PF03947 Ribosomal Proteins L2, C-terminal domain APS55_04880 PF00181 Ribosomal Proteins L2, RNA binding domain APS55_04885 PF00203 Ribosomal protein S19 APS55_04890 PF00237 Ribosomal protein L22p/L17e APS55_04895 PF07650 KH domain APS55_04895 PF00189 Ribosomal protein S3, C-terminal domain APS55_04900 PF00252 Ribosomal protein L16p/L10e APS55_04905 PF00831 Ribosomal L29 protein APS55_04910 PF00366 Ribosomal protein S17 APS55_04915 PF00238 Ribosomal protein L14p/L23e APS55_04920 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APS55_04920 PF00467 KOW motif APS55_04925 PF00281 Ribosomal protein L5 APS55_04925 PF00673 ribosomal L5P family C-terminus APS55_04930 PF00253 Ribosomal protein S14p/S29e APS55_04935 PF00410 Ribosomal protein S8 APS55_04940 PF00347 Ribosomal protein L6 APS55_04945 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APS55_04950 PF00333 Ribosomal protein S5, N-terminal domain APS55_04950 PF03719 Ribosomal protein S5, C-terminal domain APS55_04955 PF00327 Ribosomal protein L30p/L7e APS55_04960 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APS55_04965 PF00344 SecY translocase APS55_04970 PF05191 Adenylate kinase, active site lid APS55_04975 PF01176 Translation initiation factor 1A / IF-1 APS55_04980 PF00444 Ribosomal protein L36 APS55_04985 PF00416 Ribosomal protein S13/S18 APS55_04990 PF00411 Ribosomal protein S11 APS55_04995 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APS55_04995 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APS55_04995 PF01000 RNA polymerase Rpb3/RpoA insert domain APS55_05000 PF01196 Ribosomal protein L17 APS55_05005 PF00005 ABC transporter APS55_05010 PF00005 ABC transporter APS55_05015 PF02361 Cobalt transport protein APS55_05020 PF01416 tRNA pseudouridine synthase APS55_05025 PF00572 Ribosomal protein L13 APS55_05030 PF00380 Ribosomal protein S9/S16 APS55_05035 PF12822 ECF transporter, substrate-specific component APS55_05045 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APS55_05045 PF13457 GW (Gly-Tryp) dipeptide domain APS55_05055 PF13361 UvrD-like helicase C-terminal domain APS55_05055 PF00580 UvrD/REP helicase N-terminal domain APS55_05060 PF00533 BRCA1 C Terminus (BRCT) domain APS55_05060 PF01653 NAD-dependent DNA ligase adenylation domain APS55_05060 PF03120 NAD-dependent DNA ligase OB-fold domain APS55_05060 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APS55_05060 PF12826 Helix-hairpin-helix motif APS55_05065 PF07537 CamS sex pheromone cAM373 precursor APS55_05070 PF02686 Glu-tRNAGln amidotransferase C subunit APS55_05075 PF01425 Amidase APS55_05080 PF02637 GatB domain APS55_05080 PF02934 GatB/GatE catalytic domain APS55_05085 PF00781 Diacylglycerol kinase catalytic domain APS55_05090 PF01938 TRAM domain APS55_05090 PF05958 tRNA (Uracil-5-)-methyltransferase APS55_05095 PF18273 Type III R-M EcoP15I C-terminal domain APS55_05095 PF01555 DNA methylase APS55_05100 PF08774 VRR-NUC domain APS55_05100 PF04851 Type III restriction enzyme, res subunit APS55_05125 PF13520 Amino acid permease APS55_05130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APS55_05130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APS55_05135 PF01471 Putative peptidoglycan binding domain APS55_05135 PF01183 Glycosyl hydrolases family 25 APS55_05140 PF00271 Helicase conserved C-terminal domain APS55_05140 PF00270 DEAD/DEAH box helicase APS55_05150 PF12849 PBP superfamily domain APS55_05155 PF12849 PBP superfamily domain APS55_05160 PF00528 Binding-protein-dependent transport system inner membrane component APS55_05165 PF00528 Binding-protein-dependent transport system inner membrane component APS55_05170 PF00005 ABC transporter APS55_05175 PF00005 ABC transporter APS55_05180 PF01895 PhoU domain APS55_05185 PF00486 Transcriptional regulatory protein, C terminal APS55_05185 PF00072 Response regulator receiver domain APS55_05190 PF06800 Sugar transport protein APS55_05195 PF02447 GntP family permease APS55_05200 PF04138 GtrA-like protein APS55_05205 PF00535 Glycosyl transferase family 2 APS55_05210 PF02350 UDP-N-acetylglucosamine 2-epimerase APS55_05215 PF03631 Virulence factor BrkB APS55_05220 PF00258 Flavodoxin APS55_05225 PF02631 RecX family APS55_05230 PF01594 AI-2E family transporter APS55_05235 PF01467 Cytidylyltransferase-like APS55_05240 PF16658 Class II release factor RF3, C-terminal domain APS55_05240 PF00009 Elongation factor Tu GTP binding domain APS55_05240 PF03144 Elongation factor Tu domain 2 APS55_05250 PF00004 ATPase family associated with various cellular activities (AAA) APS55_05250 PF07724 AAA domain (Cdc48 subfamily) APS55_05250 PF10431 C-terminal, D2-small domain, of ClpB protein APS55_05250 PF17871 AAA lid domain APS55_05255 PF00381 PTS HPr component phosphorylation site APS55_05260 PF13439 Glycosyltransferase Family 4 APS55_05260 PF00534 Glycosyl transferases group 1 APS55_05265 PF00534 Glycosyl transferases group 1 APS55_05265 PF13439 Glycosyltransferase Family 4 APS55_05275 PF00884 Sulfatase APS55_05410 PF03965 Penicillinase repressor APS55_05425 PF12706 Beta-lactamase superfamily domain APS55_05430 PF05389 Negative regulator of genetic competence (MecA) APS55_05440 PF01432 Peptidase family M3 APS55_05440 PF08439 Oligopeptidase F APS55_05450 PF04607 Region found in RelA / SpoT proteins APS55_05455 PF01513 ATP-NAD kinase APS55_05460 PF00849 RNA pseudouridylate synthase APS55_05465 PF08241 Methyltransferase domain APS55_05470 PF00588 SpoU rRNA Methylase family APS55_05475 PF01580 FtsK/SpoIIIE family APS55_05475 PF17854 FtsK alpha domain APS55_05475 PF09397 Ftsk gamma domain APS55_05480 PF02381 MraZ protein, putative antitoxin-like APS55_05485 PF01795 MraW methylase family APS55_05495 PF03793 PASTA domain APS55_05495 PF03717 Penicillin-binding Protein dimerisation domain APS55_05495 PF00905 Penicillin binding protein transpeptidase domain APS55_05500 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APS55_05500 PF00953 Glycosyl transferase family 4 APS55_05505 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APS55_05505 PF08245 Mur ligase middle domain APS55_05505 PF02875 Mur ligase family, glutamate ligase domain APS55_05510 PF04101 Glycosyltransferase family 28 C-terminal domain APS55_05510 PF03033 Glycosyltransferase family 28 N-terminal domain APS55_05515 PF03799 Cell division protein FtsQ APS55_05515 PF08478 POTRA domain, FtsQ-type APS55_05520 PF11983 Membrane-attachment and polymerisation-promoting switch APS55_05520 PF02491 SHS2 domain inserted in FTSA APS55_05525 PF00091 Tubulin/FtsZ family, GTPase domain APS55_05525 PF12327 FtsZ family, C-terminal domain APS55_05530 PF04472 Cell division protein SepF APS55_05540 PF05103 DivIVA protein APS55_05545 PF08264 Anticodon-binding domain of tRNA APS55_05545 PF00133 tRNA synthetases class I (I, L, M and V) APS55_05545 PF06827 Zinc finger found in FPG and IleRS APS55_05550 PF00313 'Cold-shock' DNA-binding domain APS55_05555 PF00293 NUDIX domain APS55_05565 PF01048 Phosphorylase superfamily APS55_05570 PF00266 Aminotransferase class-V APS55_05595 PF13538 UvrD-like helicase C-terminal domain APS55_05595 PF14490 Helix-hairpin-helix containing domain APS55_05595 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain APS55_05600 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APS55_05600 PF14572 Phosphoribosyl synthetase-associated domain APS55_05605 PF00248 Aldo/keto reductase family APS55_05610 PF13520 Amino acid permease APS55_05615 PF00781 Diacylglycerol kinase catalytic domain APS55_05620 PF17770 Ribonuclease J C-terminal domain APS55_05620 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APS55_05620 PF00753 Metallo-beta-lactamase superfamily APS55_05625 PF07288 Protein of unknown function (DUF1447) APS55_05635 PF01327 Polypeptide deformylase APS55_05640 PF00056 lactate/malate dehydrogenase, NAD binding domain APS55_05640 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APS55_05645 PF05256 Uncharacterised protein family (UPF0223) APS55_05650 PF00459 Inositol monophosphatase family APS55_05655 PF03144 Elongation factor Tu domain 2 APS55_05655 PF14492 Elongation Factor G, domain II APS55_05655 PF00679 Elongation factor G C-terminus APS55_05655 PF00009 Elongation factor Tu GTP binding domain APS55_05660 PF01098 Cell cycle protein APS55_05665 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) APS55_05675 PF01467 Cytidylyltransferase-like APS55_05680 PF05362 Lon protease (S16) C-terminal proteolytic domain APS55_05680 PF13180 PDZ domain APS55_05690 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APS55_05695 PF03772 Competence protein APS55_05695 PF13567 Domain of unknown function (DUF4131) APS55_05695 PF00753 Metallo-beta-lactamase superfamily APS55_05700 PF06144 DNA polymerase III, delta subunit APS55_05705 PF01649 Ribosomal protein S20 APS55_05710 PF00312 Ribosomal protein S15 APS55_05715 PF00753 Metallo-beta-lactamase superfamily APS55_05715 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APS55_05715 PF17770 Ribonuclease J C-terminal domain APS55_05725 PF00009 Elongation factor Tu GTP binding domain APS55_05725 PF03143 Elongation factor Tu C-terminal domain APS55_05725 PF03144 Elongation factor Tu domain 2 APS55_05730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APS55_05730 PF05698 Bacterial trigger factor protein (TF) C-terminus APS55_05730 PF05697 Bacterial trigger factor protein (TF) APS55_05735 PF06689 ClpX C4-type zinc finger APS55_05735 PF10431 C-terminal, D2-small domain, of ClpB protein APS55_05735 PF07724 AAA domain (Cdc48 subfamily) APS55_05740 PF01926 50S ribosome-binding GTPase APS55_05750 PF02151 UvrB/uvrC motif APS55_05750 PF01541 GIY-YIG catalytic domain APS55_05750 PF08459 UvrC Helix-hairpin-helix N-terminal APS55_05755 PF01926 50S ribosome-binding GTPase APS55_05755 PF01018 GTP1/OBG APS55_05755 PF09269 Domain of unknown function (DUF1967) APS55_05760 PF00753 Metallo-beta-lactamase superfamily APS55_05765 PF17768 RecJ OB domain APS55_05765 PF01368 DHH family APS55_05765 PF02272 DHHA1 domain APS55_05765 PF10141 Single-strand DNA-specific exonuclease, C terminal domain APS55_05770 PF00156 Phosphoribosyl transferase domain APS55_05790 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal APS55_05790 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal APS55_05800 PF00717 Peptidase S24-like APS55_05800 PF01726 LexA DNA binding domain APS55_05805 PF05979 Bacterial protein of unknown function (DUF896) APS55_05810 PF03672 Uncharacterised protein family (UPF0154) APS55_05815 PF01553 Acyltransferase APS55_05820 PF05175 Methyltransferase small domain APS55_05825 PF01541 GIY-YIG catalytic domain APS55_05830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APS55_05830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APS55_05835 PF00318 Ribosomal protein S2 APS55_05840 PF00889 Elongation factor TS APS55_05845 PF00696 Amino acid kinase family APS55_05850 PF01765 Ribosome recycling factor APS55_05860 PF01255 Putative undecaprenyl diphosphate synthase APS55_05870 PF17820 PDZ domain APS55_05870 PF02163 Peptidase family M50 APS55_05875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APS55_05875 PF04073 Aminoacyl-tRNA editing domain APS55_05875 PF03129 Anticodon binding domain APS55_05880 PF02811 PHP domain APS55_05880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APS55_05880 PF14579 Helix-hairpin-helix motif APS55_05880 PF11490 DNA polymerase III polC-type N-terminus II APS55_05880 PF14480 DNA polymerase III polC-type N-terminus I APS55_05880 PF07733 Bacterial DNA polymerase III alpha NTPase domain APS55_05880 PF00929 Exonuclease APS55_05885 PF02576 RimP N-terminal domain APS55_05885 PF17384 RimP C-terminal SH3 domain APS55_05890 PF08529 NusA N-terminal domain APS55_05890 PF13184 NusA-like KH domain APS55_05890 PF00575 S1 RNA binding domain APS55_05895 PF04296 Protein of unknown function (DUF448) APS55_05900 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family APS55_05905 PF04760 Translation initiation factor IF-2, N-terminal region APS55_05905 PF11987 Translation-initiation factor 2 APS55_05905 PF00009 Elongation factor Tu GTP binding domain APS55_05910 PF02033 Ribosome-binding factor A APS55_05915 PF01509 TruB family pseudouridylate synthase (N terminal domain) APS55_05915 PF16198 tRNA pseudouridylate synthase B C-terminal domain APS55_05920 PF06574 FAD synthetase APS55_05920 PF01687 Riboflavin kinase APS55_05925 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding APS55_05925 PF01628 HrcA protein C terminal domain APS55_05930 PF01025 GrpE APS55_05935 PF00012 Hsp70 protein APS55_05940 PF00684 DnaJ central domain APS55_05940 PF01556 DnaJ C terminal domain APS55_05940 PF00226 DnaJ domain APS55_05945 PF03144 Elongation factor Tu domain 2 APS55_05945 PF06421 GTP-binding protein LepA C-terminus APS55_05945 PF00009 Elongation factor Tu GTP binding domain APS55_05945 PF00679 Elongation factor G C-terminus APS55_05950 PF00860 Permease family APS55_05955 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase APS55_05975 PF04452 RNA methyltransferase APS55_05980 PF02824 TGS domain APS55_05980 PF13291 ACT domain APS55_05980 PF04607 Region found in RelA / SpoT proteins APS55_05985 PF02580 D-Tyr-tRNA(Tyr) deacylase APS55_05990 PF13419 Haloacid dehalogenase-like hydrolase APS55_05995 PF03881 Fructosamine kinase APS55_06000 PF13393 Histidyl-tRNA synthetase APS55_06000 PF03129 Anticodon binding domain APS55_06005 PF01336 OB-fold nucleic acid binding domain APS55_06005 PF02938 GAD domain APS55_06005 PF00152 tRNA synthetases class II (D, K and N) APS55_06010 PF13276 HTH-like domain APS55_06010 PF00665 Integrase core domain APS55_06010 PF13333 Integrase core domain APS55_06020 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 APS55_06020 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) APS55_06025 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase APS55_06030 PF01061 ABC-2 type transporter APS55_06035 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase APS55_06040 PF01261 Xylose isomerase-like TIM barrel APS55_06045 PF03618 Kinase/pyrophosphorylase APS55_06050 PF01165 Ribosomal protein S21 APS55_06055 PF09424 Yqey-like protein APS55_06060 PF02562 PhoH-like protein APS55_06065 PF02130 Uncharacterized protein family UPF0054 APS55_06070 PF01219 Prokaryotic diacylglycerol kinase APS55_06075 PF07650 KH domain APS55_06075 PF01926 50S ribosome-binding GTPase APS55_06080 PF02565 Recombination protein O C terminal APS55_06080 PF11967 Recombination protein O N terminal APS55_06085 PF02091 Glycyl-tRNA synthetase alpha subunit APS55_06090 PF02092 Glycyl-tRNA synthetase beta subunit APS55_06095 PF10410 DnaB-helicase binding domain of primase APS55_06095 PF08275 DNA primase catalytic core, N-terminal domain APS55_06095 PF01807 CHC2 zinc finger APS55_06100 PF04545 Sigma-70, region 4 APS55_06100 PF04539 Sigma-70 region 3 APS55_06100 PF04542 Sigma-70 region 2 APS55_06100 PF00140 Sigma-70 factor, region 1.2 APS55_06100 PF03979 Sigma-70 factor, region 1.1 APS55_06105 PF04816 tRNA (adenine(22)-N(1))-methyltransferase APS55_06110 PF01784 NIF3 (NGG1p interacting factor 3) APS55_06115 PF07687 Peptidase dimerisation domain APS55_06115 PF01546 Peptidase family M20/M25/M40 APS55_06120 PF02861 Clp amino terminal domain, pathogenicity island component APS55_06120 PF17871 AAA lid domain APS55_06120 PF00004 ATPase family associated with various cellular activities (AAA) APS55_06120 PF07724 AAA domain (Cdc48 subfamily) APS55_06120 PF10431 C-terminal, D2-small domain, of ClpB protein APS55_06130 PF07733 Bacterial DNA polymerase III alpha NTPase domain APS55_06130 PF01336 OB-fold nucleic acid binding domain APS55_06130 PF02811 PHP domain APS55_06130 PF14579 Helix-hairpin-helix motif APS55_06130 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APS55_06135 PF02887 Pyruvate kinase, alpha/beta domain APS55_06135 PF00224 Pyruvate kinase, barrel domain APS55_06135 PF00391 PEP-utilising enzyme, mobile domain APS55_06140 PF13509 S1 domain APS55_06140 PF17783 CvfB-like winged helix domain APS55_06145 PF02899 Phage integrase, N-terminal SAM-like domain APS55_06145 PF00589 Phage integrase family APS55_06150 PF00583 Acetyltransferase (GNAT) family APS55_06155 PF02616 Segregation and condensation protein ScpA APS55_06160 PF04079 Segregation and condensation complex subunit ScpB APS55_06165 PF01479 S4 domain APS55_06165 PF00849 RNA pseudouridylate synthase APS55_06170 PF12822 ECF transporter, substrate-specific component APS55_06180 PF00271 Helicase conserved C-terminal domain APS55_06180 PF00270 DEAD/DEAH box helicase APS55_06190 PF02224 Cytidylate kinase APS55_06195 PF00575 S1 RNA binding domain APS55_06200 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APS55_06200 PF01926 50S ribosome-binding GTPase APS55_06205 PF00216 Bacterial DNA-binding protein APS55_06220 PF13735 tRNA nucleotidyltransferase domain 2 putative APS55_06220 PF12627 Probable RNA and SrmB- binding site of polymerase A APS55_06220 PF01743 Poly A polymerase head domain APS55_06225 PF00005 ABC transporter APS55_06225 PF12848 ABC transporter APS55_06225 PF16326 ABC transporter C-terminal domain APS55_06230 PF00303 Thymidylate synthase APS55_06235 PF00186 Dihydrofolate reductase APS55_06240 PF13472 GDSL-like Lipase/Acylhydrolase family APS55_06250 PF06855 YozE SAM-like fold APS55_06255 PF01926 50S ribosome-binding GTPase APS55_06260 PF01351 Ribonuclease HII APS55_06265 PF02481 DNA recombination-mediator protein A APS55_06265 PF18255 DNA processing protein A sterile alpha motif domain APS55_06270 PF01131 DNA topoisomerase APS55_06270 PF01751 Toprim domain APS55_06270 PF01396 Topoisomerase DNA binding C4 zinc finger APS55_06275 PF02899 Phage integrase, N-terminal SAM-like domain APS55_06275 PF00589 Phage integrase family APS55_06280 PF01263 Aldose 1-epimerase APS55_06285 PF02096 60Kd inner membrane protein APS55_06290 PF00708 Acylphosphatase APS55_06295 PF00588 SpoU rRNA Methylase family APS55_06295 PF08032 RNA 2'-O ribose methyltransferase substrate binding APS55_06305 PF01638 HxlR-like helix-turn-helix APS55_06310 PF01409 tRNA synthetases class II core domain (F) APS55_06310 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APS55_06315 PF03483 B3/4 domain APS55_06315 PF03147 Ferredoxin-fold anticodon binding domain APS55_06315 PF01588 Putative tRNA binding domain APS55_06315 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APS55_06315 PF03484 tRNA synthetase B5 domain APS55_06320 PF02618 YceG-like family APS55_06325 PF00485 Phosphoribulokinase / Uridine kinase family APS55_06330 PF03449 Transcription elongation factor, N-terminal APS55_06330 PF01272 Transcription elongation factor, GreA/GreB, C-term APS55_06340 PF00665 Integrase core domain APS55_06340 PF13333 Integrase core domain APS55_06350 PF00905 Penicillin binding protein transpeptidase domain APS55_06350 PF03717 Penicillin-binding Protein dimerisation domain APS55_06355 PF00471 Ribosomal protein L33 APS55_06360 PF01812 5-formyltetrahydrofolate cyclo-ligase family APS55_06365 PF01694 Rhomboid family APS55_06375 PF00480 ROK family APS55_06390 PF13333 Integrase core domain APS55_06390 PF00665 Integrase core domain APS55_06400 PF13411 MerR HTH family regulatory protein APS55_06405 PF00120 Glutamine synthetase, catalytic domain APS55_06405 PF03951 Glutamine synthetase, beta-Grasp domain APS55_06420 PF00829 Ribosomal prokaryotic L21 protein APS55_06430 PF01016 Ribosomal L27 protein APS55_06435 PF09285 Elongation factor P, C-terminal APS55_06435 PF08207 Elongation factor P (EF-P) KOW-like domain APS55_06435 PF01132 Elongation factor P (EF-P) OB domain APS55_06440 PF03780 Asp23 family, cell envelope-related function APS55_06445 PF01029 NusB family APS55_06450 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APS55_06450 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APS55_06455 PF13742 OB-fold nucleic acid binding domain APS55_06455 PF02601 Exonuclease VII, large subunit APS55_06460 PF02609 Exonuclease VII small subunit APS55_06465 PF00348 Polyprenyl synthetase APS55_06470 PF01728 FtsJ-like methyltransferase APS55_06470 PF01479 S4 domain APS55_06475 PF13476 AAA domain APS55_06480 PF00625 Guanylate kinase APS55_06485 PF01192 RNA polymerase Rpb6 APS55_06490 PF02441 Flavoprotein APS55_06490 PF04127 DNA / pantothenate metabolism flavoprotein APS55_06495 PF04851 Type III restriction enzyme, res subunit APS55_06495 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APS55_06495 PF18074 Primosomal protein N C-terminal domain APS55_06495 PF17764 3′ DNA-binding domain (3′BD) APS55_06495 PF00271 Helicase conserved C-terminal domain APS55_06500 PF00551 Formyl transferase APS55_06500 PF02911 Formyl transferase, C-terminal domain APS55_06505 PF01189 16S rRNA methyltransferase RsmB/F APS55_06505 PF01029 NusB family APS55_06515 PF03793 PASTA domain APS55_06515 PF00069 Protein kinase domain APS55_06520 PF03193 RsgA GTPase APS55_06520 PF16745 RsgA N-terminal domain APS55_06525 PF00834 Ribulose-phosphate 3 epimerase family APS55_06530 PF04263 Thiamin pyrophosphokinase, catalytic domain APS55_06530 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain APS55_06535 PF00830 Ribosomal L28 family APS55_06540 PF03780 Asp23 family, cell envelope-related function APS55_06545 PF02734 DAK2 domain APS55_06545 PF13684 Dihydroxyacetone kinase family APS55_06550 PF17191 RecG wedge domain APS55_06550 PF00271 Helicase conserved C-terminal domain APS55_06550 PF00270 DEAD/DEAH box helicase APS55_06555 PF02504 Fatty acid synthesis protein APS55_06560 PF00550 Phosphopantetheine attachment site APS55_06565 PF14622 Ribonuclease-III-like APS55_06565 PF00035 Double-stranded RNA binding motif APS55_06570 PF02463 RecF/RecN/SMC N terminal domain APS55_06570 PF06470 SMC proteins Flexible Hinge Domain APS55_06575 PF02881 SRP54-type protein, helical bundle domain APS55_06575 PF00448 SRP54-type protein, GTPase domain APS55_06580 PF04297 Putative helix-turn-helix protein, YlxM / p13 like APS55_06585 PF00448 SRP54-type protein, GTPase domain APS55_06585 PF02881 SRP54-type protein, helical bundle domain APS55_06585 PF02978 Signal peptide binding domain APS55_06605 PF00886 Ribosomal protein S16 APS55_06615 PF01782 RimM N-terminal domain APS55_06615 PF05239 PRC-barrel domain APS55_06620 PF01746 tRNA (Guanine-1)-methyltransferase APS55_06625 PF01245 Ribosomal protein L19 APS55_06630 PF03577 Peptidase family C69 APS55_06635 PF01361 Tautomerase enzyme APS55_06640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APS55_06640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APS55_06650 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF APS55_06650 PF17126 RsmF rRNA methyltransferase first C-terminal domain APS55_06650 PF01189 16S rRNA methyltransferase RsmB/F APS55_06665 PF01070 FMN-dependent dehydrogenase APS55_06670 PF00288 GHMP kinases N terminal domain APS55_06670 PF08544 GHMP kinases C terminal APS55_06680 PF00288 GHMP kinases N terminal domain APS55_06680 PF08544 GHMP kinases C terminal APS55_06680 PF10509 Galactokinase galactose-binding signature APS55_06685 PF13307 Helicase C-terminal domain APS55_06685 PF00929 Exonuclease APS55_06700 PF00912 Transglycosylase APS55_06700 PF00905 Penicillin binding protein transpeptidase domain APS55_06705 PF03838 Recombination protein U APS55_06710 PF06908 YspA SLOG family APS55_06715 PF05103 DivIVA protein APS55_06720 PF01170 Putative RNA methylase family UPF0020 APS55_06720 PF02926 THUMP domain APS55_06725 PF01266 FAD dependent oxidoreductase APS55_06730 PF13456 Reverse transcriptase-like APS55_06740 PF01268 Formate--tetrahydrofolate ligase APS55_06745 PF01252 Signal peptidase (SPase) II APS55_06750 PF01479 S4 domain APS55_06750 PF00849 RNA pseudouridylate synthase APS55_06755 PF00156 Phosphoribosyl transferase domain APS55_06760 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APS55_06760 PF00117 Glutamine amidotransferase class-I APS55_06765 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APS55_06765 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APS55_06765 PF02142 MGS-like domain APS55_06785 PF00255 Glutathione peroxidase APS55_06800 PF02645 Uncharacterised protein, DegV family COG1307 APS55_06805 PF05670 NFACT protein RNA binding domain APS55_06820 PF01625 Peptide methionine sulfoxide reductase APS55_06825 PF01641 SelR domain APS55_06835 PF02833 DHHA2 domain APS55_06835 PF01368 DHH family APS55_06840 PF03466 LysR substrate binding domain APS55_06840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS55_06845 PF03989 DNA gyrase C-terminal domain, beta-propeller APS55_06845 PF00521 DNA gyrase/topoisomerase IV, subunit A APS55_06850 PF00986 DNA gyrase B subunit, carboxyl terminus APS55_06850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS55_06850 PF00204 DNA gyrase B APS55_06850 PF01751 Toprim domain APS55_06855 PF02660 Glycerol-3-phosphate acyltransferase APS55_06860 PF00512 His Kinase A (phospho-acceptor) domain APS55_06860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS55_06860 PF18719 ArlS sensor domain APS55_06865 PF00072 Response regulator receiver domain APS55_06865 PF00486 Transcriptional regulatory protein, C terminal APS55_06870 PF01783 Ribosomal L32p protein family APS55_06880 PF05636 HIGH Nucleotidyl Transferase APS55_06885 PF13649 Methyltransferase domain APS55_06895 PF01966 HD domain APS55_06900 PF01467 Cytidylyltransferase-like APS55_06910 PF01926 50S ribosome-binding GTPase APS55_06920 PF00453 Ribosomal protein L20 APS55_06925 PF01632 Ribosomal protein L35 APS55_06930 PF05198 Translation initiation factor IF-3, N-terminal domain APS55_06930 PF00707 Translation initiation factor IF-3, C-terminal domain APS55_06935 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APS55_06935 PF02824 TGS domain APS55_06935 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APS55_06935 PF03129 Anticodon binding domain APS55_06940 PF01695 IstB-like ATP binding protein APS55_06940 PF07319 Primosomal protein DnaI N-terminus APS55_06945 PF07261 Replication initiation and membrane attachment APS55_06950 PF03477 ATP cone domain APS55_06955 PF01121 Dephospho-CoA kinase APS55_06960 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APS55_06960 PF06827 Zinc finger found in FPG and IleRS APS55_06960 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APS55_06965 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APS55_06965 PF01367 5'-3' exonuclease, C-terminal SAM fold APS55_06965 PF00476 DNA polymerase family A APS55_06970 PF01027 Inhibitor of apoptosis-promoting Bax1 APS55_06975 PF01225 Mur ligase family, catalytic domain APS55_06975 PF08245 Mur ligase middle domain APS55_06975 PF02875 Mur ligase family, glutamate ligase domain APS55_06985 PF01588 Putative tRNA binding domain APS55_06985 PF14794 Domain of unknown function (DUF4479) APS55_06990 PF00085 Thioredoxin APS55_06995 PF02390 Putative methyltransferase APS55_07005 PF00005 ABC transporter APS55_07010 PF01230 HIT domain APS55_07025 PF13514 AAA domain APS55_07030 PF00149 Calcineurin-like phosphoesterase APS55_07035 PF00912 Transglycosylase APS55_07035 PF00905 Penicillin binding protein transpeptidase domain APS55_07040 PF03485 Arginyl tRNA synthetase N terminal domain APS55_07040 PF00750 tRNA synthetases class I (R) APS55_07040 PF05746 DALR anticodon binding domain APS55_07055 PF00056 lactate/malate dehydrogenase, NAD binding domain APS55_07055 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APS55_07065 PF01177 Asp/Glu/Hydantoin racemase APS55_07075 PF08245 Mur ligase middle domain APS55_07075 PF02875 Mur ligase family, glutamate ligase domain APS55_07080 PF00733 Asparagine synthase APS55_07080 PF13537 Glutamine amidotransferase domain APS55_07085 PF17760 UvrA interaction domain APS55_07085 PF17755 UvrA DNA-binding domain APS55_07085 PF00005 ABC transporter APS55_07100 PF01741 Large-conductance mechanosensitive channel, MscL APS55_07105 PF01712 Deoxynucleoside kinase APS55_07110 PF01546 Peptidase family M20/M25/M40 APS55_07115 PF01256 Carbohydrate kinase APS55_07125 PF14667 Polysaccharide biosynthesis C-terminal domain APS55_07125 PF01943 Polysaccharide biosynthesis protein APS55_07130 PF00133 tRNA synthetases class I (I, L, M and V) APS55_07130 PF13603 Leucyl-tRNA synthetase, Domain 2 APS55_07130 PF09334 tRNA synthetases class I (M) APS55_07130 PF08264 Anticodon-binding domain of tRNA APS55_07135 PF06962 Putative rRNA methylase APS55_07140 PF07690 Major Facilitator Superfamily APS55_07145 PF02773 S-adenosylmethionine synthetase, C-terminal domain APS55_07145 PF00438 S-adenosylmethionine synthetase, N-terminal domain APS55_07145 PF02772 S-adenosylmethionine synthetase, central domain APS55_07225 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APS55_07230 PF09335 SNARE associated Golgi protein APS55_07240 PF13333 Integrase core domain APS55_07240 PF00665 Integrase core domain APS55_07250 PF13344 Haloacid dehalogenase-like hydrolase APS55_07255 PF06265 Protein of unknown function (DUF1027) APS55_07260 PF02872 5'-nucleotidase, C-terminal domain APS55_07270 PF00324 Amino acid permease APS55_07275 PF00871 Acetokinase family APS55_07280 PF02384 N-6 DNA Methylase APS55_07300 PF07963 Prokaryotic N-terminal methylation motif APS55_07310 PF00437 Type II/IV secretion system protein APS55_07315 PF01709 Transcriptional regulator APS55_07320 PF00356 Bacterial regulatory proteins, lacI family APS55_07335 PF01725 Ham1 family APS55_07340 PF01177 Asp/Glu/Hydantoin racemase APS55_07345 PF10702 Protein of unknown function (DUF2507) APS55_07350 PF00085 Thioredoxin APS55_07355 PF00488 MutS domain V APS55_07355 PF01713 Smr domain APS55_07370 PF06949 Protein of unknown function (DUF1292) APS55_07375 PF03652 Holliday junction resolvase APS55_07380 PF06135 IreB regulatory phosphoprotein APS55_07385 PF02272 DHHA1 domain APS55_07385 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APS55_07385 PF01411 tRNA synthetases class II (A) APS55_07390 PF00270 DEAD/DEAH box helicase APS55_07390 PF00271 Helicase conserved C-terminal domain APS55_07395 PF02272 DHHA1 domain APS55_07395 PF01368 DHH family APS55_07400 PF02699 Preprotein translocase subunit APS55_07405 PF05496 Holliday junction DNA helicase RuvB P-loop domain APS55_07405 PF05491 RuvB C-terminal winged helix domain APS55_07405 PF17864 RuvB AAA lid domain APS55_07410 PF07499 RuvA, C-terminal domain APS55_07410 PF01330 RuvA N terminal domain APS55_07415 PF01119 DNA mismatch repair protein, C-terminal domain APS55_07415 PF08676 MutL C terminal dimerisation domain APS55_07420 PF01624 MutS domain I APS55_07420 PF00488 MutS domain V APS55_07420 PF05190 MutS family domain IV APS55_07420 PF05192 MutS domain III APS55_07420 PF05188 MutS domain II APS55_07425 PF13277 YmdB-like protein APS55_07430 PF01966 HD domain APS55_07430 PF12072 Domain of unknown function (DUF3552) APS55_07430 PF00013 KH domain APS55_07435 PF00154 recA bacterial DNA recombination protein APS55_07440 PF18146 Damage-inducible protein CinA KH domain APS55_07440 PF02464 Competence-damaged protein APS55_07440 PF00994 Probable molybdopterin binding domain APS55_07445 PF01066 CDP-alcohol phosphatidyltransferase APS55_07450 PF13464 Domain of unknown function (DUF4115) APS55_07455 PF00675 Insulinase (Peptidase family M16) APS55_07455 PF05193 Peptidase M16 inactive domain APS55_07465 PF00497 Bacterial extracellular solute-binding proteins, family 3 APS55_07470 PF00005 ABC transporter APS55_07475 PF00528 Binding-protein-dependent transport system inner membrane component APS55_07480 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APS55_07485 PF03775 Septum formation inhibitor MinC, C-terminal domain APS55_07495 PF04085 rod shape-determining protein MreC APS55_07505 PF08245 Mur ligase middle domain APS55_07505 PF02875 Mur ligase family, glutamate ligase domain APS55_07510 PF10458 Valyl tRNA synthetase tRNA binding arm APS55_07510 PF00133 tRNA synthetases class I (I, L, M and V) APS55_07510 PF08264 Anticodon-binding domain of tRNA APS55_07515 PF08534 Redoxin APS55_07520 PF02568 Thiamine biosynthesis protein (ThiI) APS55_07520 PF02926 THUMP domain APS55_07525 PF00266 Aminotransferase class-V APS55_07530 PF06160 Septation ring formation regulator, EzrA APS55_07535 PF13185 GAF domain APS55_07540 PF01479 S4 domain APS55_07540 PF00163 Ribosomal protein S4/S9 N-terminal domain APS55_07550 PF16193 AAA C-terminal domain APS55_07550 PF12002 MgsA AAA+ ATPase C terminal APS55_07550 PF05496 Holliday junction DNA helicase RuvB P-loop domain APS55_07560 PF00582 Universal stress protein family APS55_07570 PF13673 Acetyltransferase (GNAT) domain APS55_07570 PF00958 GMP synthase C terminal domain APS55_07570 PF03352 Methyladenine glycosylase APS55_07570 PF13302 Acetyltransferase (GNAT) domain APS55_07570 PF00117 Glutamine amidotransferase class-I APS55_07575 PF01820 D-ala D-ala ligase N-terminus APS55_07575 PF07478 D-ala D-ala ligase C-terminus APS55_07585 PF00005 ABC transporter APS55_07590 PF07702 UTRA domain APS55_07590 PF00392 Bacterial regulatory proteins, gntR family APS55_07595 PF03180 NLPA lipoprotein APS55_07600 PF00528 Binding-protein-dependent transport system inner membrane component APS55_07605 PF00005 ABC transporter APS55_07605 PF09383 NIL domain APS55_07610 PF01098 Cell cycle protein APS55_07625 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APS55_07635 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APS55_07635 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain APS55_07640 PF02874 ATP synthase alpha/beta family, beta-barrel domain APS55_07640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APS55_07645 PF00231 ATP synthase