locus-tag class description aq_001 PF03764 Elongation factor G, domain IV aq_001 PF00009 Elongation factor Tu GTP binding domain aq_001 PF03144 Elongation factor Tu domain 2 aq_001 PF00679 Elongation factor G C-terminus aq_001 PF14492 Elongation Factor G, domain II aq_005 PF03143 Elongation factor Tu C-terminal domain aq_005 PF03144 Elongation factor Tu domain 2 aq_005 PF00009 Elongation factor Tu GTP binding domain aq_008 PF00338 Ribosomal protein S10p/S20e aq_009 PF00297 Ribosomal protein L3 aq_011 PF00573 Ribosomal protein L4/L1 family aq_012 PF00276 Ribosomal protein L23 aq_013 PF00181 Ribosomal Proteins L2, RNA binding domain aq_013 PF03947 Ribosomal Proteins L2, C-terminal domain aq_015 PF00203 Ribosomal protein S19 aq_016a PF00237 Ribosomal protein L22p/L17e aq_017 PF07650 KH domain aq_017 PF00189 Ribosomal protein S3, C-terminal domain aq_018 PF00252 Ribosomal protein L16p/L10e aq_020 PF00366 Ribosomal protein S17 aq_021 PF01487 Type I 3-dehydroquinase aq_023 PF00202 Aminotransferase class-III aq_024 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain aq_024 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain aq_024 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain aq_025 PF01098 Cell cycle protein aq_027 PF00563 EAL domain aq_027 PF00990 Diguanylate cyclase, GGDEF domain aq_027 PF03707 Bacterial signalling protein N terminal repeat aq_030 PF03453 MoeA N-terminal region (domain I and II) aq_030 PF03454 MoeA C-terminal region (domain IV) aq_030 PF00994 Probable molybdopterin binding domain aq_031 PF00939 Sodium:sulfate symporter transmembrane region aq_032 PF01139 tRNA-splicing ligase RtcB aq_035 PF00990 Diguanylate cyclase, GGDEF domain aq_036 PF01467 Cytidylyltransferase-like aq_038 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase aq_038 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase aq_039 PF00475 Imidazoleglycerol-phosphate dehydratase aq_041 PF02021 Uncharacterised protein family UPF0102 aq_044 PF00033 Cytochrome b/b6/petB aq_044 PF00032 Cytochrome b(C-terminal)/b6/petD aq_045 PF00355 Rieske [2Fe-2S] domain aq_045 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal aq_046 PF01180 Dihydroorotate dehydrogenase aq_049 PF01329 Pterin 4 alpha carbinolamine dehydratase aq_052 PF01040 UbiA prenyltransferase family aq_053 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 aq_053 PF00953 Glycosyl transferase family 4 aq_054 PF09936 SAM-dependent RNA methyltransferase aq_056 PF07977 FabA-like domain aq_057 PF03749 Sugar fermentation stimulation protein RE domain aq_057 PF17746 SfsA N-terminal OB domain aq_059 PF01738 Dienelactone hydrolase family aq_059 PF00156 Phosphoribosyl transferase domain aq_061 PF00994 Probable molybdopterin binding domain aq_062 PF17284 Spermidine synthase tetramerisation domain aq_063 PF01250 Ribosomal protein S6 aq_064 PF00436 Single-strand binding protein family aq_064a PF01084 Ribosomal protein S18 aq_064b PF02416 mttA/Hcf106 family aq_064c PF02416 mttA/Hcf106 family aq_065 PF02390 Putative methyltransferase aq_066 PF01699 Sodium/calcium exchanger protein aq_067 PF12800 4Fe-4S binding domain aq_067 PF13247 4Fe-4S dicluster domain aq_069 PF01196 Ribosomal protein L17 aq_070 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain aq_070 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain aq_070 PF01000 RNA polymerase Rpb3/RpoA insert domain aq_072 PF01479 S4 domain aq_072 PF00163 Ribosomal protein S4/S9 N-terminal domain aq_073 PF00411 Ribosomal protein S11 aq_074 PF00416 Ribosomal protein S13/S18 aq_075 PF00444 Ribosomal protein L36 aq_075a PF01176 Translation initiation factor 1A / IF-1 aq_076 PF00557 Metallopeptidase family M24 aq_079 PF00344 SecY translocase aq_080 PF00830 Ribosomal L28 family aq_081 PF01264 Chorismate synthase aq_083 PF03707 Bacterial signalling protein N terminal repeat aq_083 PF00990 Diguanylate cyclase, GGDEF domain aq_083 PF00563 EAL domain aq_085 PF00793 DAHP synthetase I family aq_086 PF00528 Binding-protein-dependent transport system inner membrane component aq_091 PF02954 Bacterial regulatory protein, Fis family aq_091 PF00989 PAS fold aq_091 PF00158 Sigma-54 interaction domain aq_093 PF00158 Sigma-54 interaction domain aq_093 PF02954 Bacterial regulatory protein, Fis family aq_093 PF00072 Response regulator receiver domain aq_094 PF03477 ATP cone domain aq_094 PF02867 Ribonucleotide reductase, barrel domain aq_094 PF00317 Ribonucleotide reductase, all-alpha domain aq_098 PF03840 Preprotein translocase SecG subunit aq_099 PF17827 PrmC N-terminal domain aq_099 PF05175 Methyltransferase small domain aq_1001 PF00691 OmpA family aq_1001 PF13677 Membrane MotB of proton-channel complex MotA/MotB aq_1002 PF13677 Membrane MotB of proton-channel complex MotA/MotB aq_1002 PF00691 OmpA family aq_1003 PF01618 MotA/TolQ/ExbB proton channel family aq_1005 PF03091 CutA1 divalent ion tolerance protein aq_1008 PF14579 Helix-hairpin-helix motif aq_1008 PF07733 Bacterial DNA polymerase III alpha NTPase domain aq_1008 PF17657 Bacterial DNA polymerase III alpha subunit finger domain aq_1008 PF02811 PHP domain aq_101 PF03471 Transporter associated domain aq_101 PF00571 CBS domain aq_1013 PF12794 Mechanosensitive ion channel inner membrane domain 1 aq_1013 PF00924 Mechanosensitive ion channel aq_1013 PF12795 Mechanosensitive ion channel porin domain aq_1019 PF00586 AIR synthase related protein, N-terminal domain aq_1019 PF02769 AIR synthase related protein, C-terminal domain aq_1021 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA aq_1023 PF00850 Histone deacetylase domain aq_1024 PF00582 Universal stress protein family aq_1026 PF01751 Toprim domain aq_1026 PF00986 DNA gyrase B subunit, carboxyl terminus aq_1026 PF00204 DNA gyrase B aq_1026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase aq_103 PF00795 Carbon-nitrogen hydrolase aq_1030 PF00586 AIR synthase related protein, N-terminal domain aq_1030 PF02769 AIR synthase related protein, C-terminal domain aq_1031 PF03841 L-seryl-tRNA selenium transferase aq_1033 PF00009 Elongation factor Tu GTP binding domain aq_1033 PF03144 Elongation factor Tu domain 2 aq_1033 PF09106 Elongation factor SelB, winged helix aq_1033 PF09107 Elongation factor SelB, winged helix aq_1035 PF01841 Transglutaminase-like superfamily aq_1038 PF00005 ABC transporter aq_1038 PF03466 LysR substrate binding domain aq_1046 PF13247 4Fe-4S dicluster domain aq_1046 PF12800 4Fe-4S binding domain aq_1046 PF09163 Formate dehydrogenase N, transmembrane aq_1050 PF00080 Copper/zinc superoxide dismutase (SODC) aq_1051 PF04216 Protein involved in formate dehydrogenase formation aq_1052 PF01597 Glycine cleavage H-protein aq_1054 PF00149 Calcineurin-like phosphoesterase aq_1055 PF00005 ABC transporter aq_1056 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain aq_1056 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family aq_1057 PF05239 PRC-barrel domain aq_1057 PF01782 RimM N-terminal domain aq_1058 PF00440 Bacterial regulatory proteins, tetR family aq_1058 PF18665 Tetracyclin repressor-like, C-terminal domain aq_1059 PF02321 Outer membrane efflux protein aq_1060 PF13533 Biotin-lipoyl like aq_1062 PF07690 Major Facilitator Superfamily aq_1065 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain aq_1065 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain aq_1068 PF09190 DALR domain aq_1068 PF01406 tRNA synthetases class I (C) catalytic domain aq_1069 PF01370 NAD dependent epimerase/dehydratase family aq_1071 PF00171 Aldehyde dehydrogenase family aq_1073 PF01545 Cation efflux family aq_1073 PF16916 Dimerisation domain of Zinc Transporter aq_1081 PF01747 ATP-sulfurylase aq_1081 PF14306 PUA-like domain aq_1082 PF16363 GDP-mannose 4,6 dehydratase aq_1088 PF13181 Tetratricopeptide repeat aq_108b PF17209 Hfq protein aq_109 PF00543 Nitrogen regulatory protein P-II aq_1094 PF00005 ABC transporter aq_1097 PF00005 ABC transporter aq_1097 PF00664 ABC transporter transmembrane region aq_1099 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal aq_1099 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III aq_1101 PF02504 Fatty acid synthesis protein aq_1102 PF01783 Ribosomal L32p protein family aq_1103 PF02620 Large ribosomal RNA subunit accumulation protein YceD aq_1104 PF06144 DNA polymerase III, delta subunit aq_1108 PF01597 Glycine cleavage H-protein aq_1109 PF02347 Glycine cleavage system P-protein aq_111 PF00120 Glutamine synthetase, catalytic domain aq_111 PF03951 Glutamine synthetase, beta-Grasp domain aq_1111 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases aq_1115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase aq_1115 PF08447 PAS fold aq_1115 PF00989 PAS fold aq_1115 PF00512 His Kinase A (phospho-acceptor) domain aq_1117 PF00072 Response regulator receiver domain aq_1117 PF02954 Bacterial regulatory protein, Fis family aq_1117 PF00158 Sigma-54 interaction domain aq_112 PF00909 Ammonium Transporter Family aq_1122 PF00873 AcrB/AcrD/AcrF family aq_113 PF07642 Putative beta-barrel porin-2, OmpL-like. bbp2 aq_1130 PF07731 Multicopper oxidase aq_1130 PF00394 Multicopper oxidase aq_1130 PF07732 Multicopper oxidase aq_1134 PF00696 Amino acid kinase family aq_1134 PF01472 PUA domain aq_1138 PF02502 Ribose/Galactose Isomerase aq_1139 PF01098 Cell cycle protein aq_1140 PF00764 Arginosuccinate synthase aq_1143 PF00701 Dihydrodipicolinate synthetase family aq_1144 PF00425 chorismate binding enzyme aq_1144 PF04715 Anthranilate synthase component I, N terminal region aq_1145 PF00465 Iron-containing alcohol dehydrogenase aq_1151 PF00990 Diguanylate cyclase, GGDEF domain aq_1151 PF03707 Bacterial signalling protein N terminal repeat aq_1151 PF00563 EAL domain aq_1152 PF01842 ACT domain aq_1152 PF13840 ACT domain aq_1152 PF00696 Amino acid kinase family aq_1154 PF02773 S-adenosylmethionine synthetase, C-terminal domain aq_1154 PF00438 S-adenosylmethionine synthetase, N-terminal domain aq_1154 PF02772 S-adenosylmethionine synthetase, central domain aq_1155 PF13393 Histidyl-tRNA synthetase aq_1156 PF00551 Formyl transferase aq_1156 PF02911 Formyl transferase, C-terminal domain aq_1156 PF00378 Enoyl-CoA hydratase/isomerase aq_1157 PF01924 Hydrogenase formation hypA family aq_1159 PF01131 DNA topoisomerase aq_1159 PF01751 Toprim domain aq_1159 PF17915 Reverse gyrase zinc finger aq_1159 PF00270 DEAD/DEAH box helicase aq_116 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region aq_116 PF01568 Molydopterin dinucleotide binding domain aq_116 PF00384 Molybdopterin oxidoreductase aq_116 PF12838 4Fe-4S dicluster domain aq_116 PF04879 Molybdopterin oxidoreductase Fe4S4 domain aq_1168 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain aq_1172 PF02142 MGS-like domain aq_1172 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain aq_1173 PF00300 Histidine phosphatase superfamily (branch 1) aq_1174 PF03330 Lytic transglycolase aq_1175 PF00156 Phosphoribosyl transferase domain aq_1176 PF17269 Family of unknown function (DUF5335) aq_1177 PF04101 Glycosyltransferase family 28 C-terminal domain aq_1177 PF03033 Glycosyltransferase family 28 N-terminal domain aq_1178 PF00731 AIR carboxylase aq_118 PF00162 Phosphoglycerate kinase aq_1180 PF05221 S-adenosyl-L-homocysteine hydrolase aq_1180 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain aq_1182 PF08345 Flagellar M-ring protein C-terminal aq_1182 PF01514 Secretory protein of YscJ/FliF family aq_1182a PF02049 Flagellar hook-basal body complex protein FliE aq_1183 PF00460 Flagella basal body rod protein aq_1183 PF06429 Flagellar basal body rod FlgEFG protein C-terminal aq_1189 PF00905 Penicillin binding protein transpeptidase domain aq_1189 PF03717 Penicillin-binding Protein dimerisation domain aq_119 PF00923 Transaldolase/Fructose-6-phosphate aldolase aq_1191 PF02481 DNA recombination-mediator protein A aq_1191 PF17782 DprA winged helix domain aq_1192a PF12800 4Fe-4S binding domain aq_1195 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II aq_1195 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg aq_1196 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain aq_1202 PF00152 tRNA synthetases class II (D, K and N) aq_1202 PF01336 OB-fold nucleic acid binding domain aq_1204 PF01964 Radical SAM ThiC family aq_1206 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit aq_1207 PF01475 Ferric uptake regulator family aq_1208 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain aq_1208 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain aq_121 PF01494 FAD binding domain aq_1210 PF03649 Uncharacterised protein family (UPF0014) aq_1211 PF07238 PilZ domain aq_1212 PF00771 FHIPEP family aq_1214 PF00448 SRP54-type protein, GTPase domain aq_1217 PF10609 NUBPL iron-transfer P-loop NTPase aq_1218 PF04542 Sigma-70 region 2 aq_1218 PF04539 Sigma-70 region 3 aq_1218 PF04545 Sigma-70, region 4 aq_122 PF03129 Anticodon binding domain aq_122 PF13393 Histidyl-tRNA synthetase aq_1220 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase aq_1221 PF00749 tRNA synthetases class I (E and Q), catalytic domain aq_1222 PF03459 TOBE domain aq_1222 PF00005 ABC transporter aq_1226 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) aq_1229 PF07690 Major Facilitator Superfamily aq_123 PF00886 Ribosomal protein S16 aq_1231 PF04976 DMSO reductase anchor subunit (DmsC) aq_1232 PF12800 4Fe-4S binding domain aq_1232 PF13247 4Fe-4S dicluster domain aq_1234 PF04879 Molybdopterin oxidoreductase Fe4S4 domain aq_1234 PF00384 Molybdopterin oxidoreductase aq_1234 PF01568 Molydopterin dinucleotide binding domain aq_1237 PF14824 Sirohaem biosynthesis protein central aq_1237 PF10414 Sirohaem synthase dimerisation region aq_1237 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases aq_1240 PF00106 short chain dehydrogenase aq_1242 PF01713 Smr domain aq_1242 PF00488 MutS domain V aq_1245 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain aq_1245 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain aq_1248 PF01255 Putative undecaprenyl diphosphate synthase aq_125 PF13664 Domain of unknown function (DUF4149) aq_1250 PF01161 Phosphatidylethanolamine-binding protein aq_1254 PF02699 Preprotein translocase subunit aq_1255 PF04023 FeoA domain aq_1255 PF07664 Ferrous iron transport protein B C terminus aq_1255 PF17910 FeoB cytosolic helical domain aq_1255 PF02421 Ferrous iron transport protein B aq_1255 PF07670 Nucleoside recognition aq_1257 PF09334 tRNA synthetases class I (M) aq_1257 PF00133 tRNA synthetases class I (I, L, M and V) aq_1257 PF08264 Anticodon-binding domain of tRNA aq_1258 PF02424 ApbE family aq_1265 PF13722 5TM C-terminal transporter carbon starvation CstA aq_1265 PF02554 Carbon starvation protein CstA aq_1267 PF00902 Sec-independent protein translocase protein (TatC) aq_1268 PF01740 STAS domain aq_1268 PF00916 Sulfate permease family aq_1270 PF08241 Methyltransferase domain aq_1271 PF00675 Insulinase (Peptidase family M16) aq_1271 PF05193 Peptidase M16 inactive domain aq_1273 PF13525 Outer membrane lipoprotein aq_1275 PF10150 Ribonuclease E/G family aq_1275 PF00575 S1 RNA binding domain aq_1279 PF01488 Shikimate / quinate 5-dehydrogenase aq_1279 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain aq_128 PF01554 MatE aq_1281 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) aq_1283 PF00011 Hsp20/alpha crystallin family aq_1285 PF00482 Type II secretion system (T2SS), protein F aq_1288 PF00263 Bacterial type II and III secretion system protein aq_1288 PF03958 Bacterial type II/III secretion system short domain aq_1290 PF00709 Adenylosuccinate synthetase aq_1292 PF03266 NTPase aq_1293 PF02272 DHHA1 domain aq_1293 PF01411 tRNA synthetases class II (A) aq_1293 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain aq_1296 PF10431 C-terminal, D2-small domain, of ClpB protein aq_1296 PF00004 ATPase family associated with various cellular activities (AAA) aq_1296 PF17871 AAA lid domain aq_1296 PF07724 AAA domain (Cdc48 subfamily) aq_1296 PF02861 Clp amino terminal domain, pathogenicity island component aq_1300 PF07244 Surface antigen variable number repeat aq_1300 PF01103 Surface antigen aq_1303 PF00977 Histidine biosynthesis protein aq_1303a PF00313 'Cold-shock' DNA-binding domain aq_1305 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B aq_1306 PF08442 ATP-grasp domain aq_1306 PF00549 CoA-ligase aq_1308 PF01702 Queuine tRNA-ribosyltransferase aq_1309 PF00288 GHMP kinases N terminal domain aq_1309 PF08544 GHMP kinases C terminal aq_1310 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 aq_1312 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit aq_1314 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit aq_1314 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit aq_1315 PF00146 NADH dehydrogenase aq_1317 PF13237 4Fe-4S dicluster domain aq_1318 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 aq_1319 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L aq_132 PF00885 6,7-dimethyl-8-ribityllumazine synthase aq_1320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus aq_1320 PF00361 Proton-conducting membrane transporter aq_1321 PF00361 Proton-conducting membrane transporter aq_1322 PF00361 Proton-conducting membrane transporter aq_1323 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase aq_1329 PF00899 ThiF family aq_133 PF01029 NusB family aq_1330 PF00375 Sodium:dicarboxylate symporter family aq_1331 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion aq_1333 PF01171 PP-loop family aq_1334 PF00117 Glutamine amidotransferase class-I aq_1334 PF06418 CTP synthase N-terminus aq_1335 PF01370 NAD dependent epimerase/dehydratase family aq_1336 PF01875 Memo-like protein aq_1337 PF07724 AAA domain (Cdc48 subfamily) aq_1337 PF06689 ClpX C4-type zinc finger aq_1337 PF10431 C-terminal, D2-small domain, of ClpB protein aq_1339 PF00574 Clp protease aq_1340 PF05697 Bacterial trigger factor protein (TF) aq_1340 PF05698 Bacterial trigger factor protein (TF) C-terminus aq_1342 PF13419 Haloacid dehalogenase-like hydrolase aq_1345 PF04012 PspA/IM30 family aq_1347 PF13785 Domain of unknown function (DUF4178) aq_1349 PF03994 Domain of Unknown Function (DUF350) aq_135 PF13460 NAD(P)H-binding aq_1351 PF02562 PhoH-like protein aq_1354 PF02130 Uncharacterized protein family UPF0054 aq_1355 PF04055 Radical SAM superfamily aq_1357 PF01654 Cytochrome bd terminal oxidase subunit I aq_1358 PF02322 Cytochrome bd terminal oxidase subunit II aq_1359 PF00583 Acetyltransferase (GNAT) family aq_136 PF00034 Cytochrome c aq_136 PF03150 Di-haem cytochrome c peroxidase aq_1360 PF01225 Mur ligase family, catalytic domain aq_1360 PF08245 Mur ligase middle domain aq_1360 PF02875 Mur ligase family, glutamate ligase domain aq_1363 PF00364 Biotin-requiring enzyme aq_1364 PF09285 Elongation factor P, C-terminal aq_1364 PF08207 Elongation factor P (EF-P) KOW-like domain aq_1364 PF01132 Elongation factor P (EF-P) OB domain aq_1365 PF01256 Carbohydrate kinase aq_1365 PF03853 YjeF-related protein N-terminus aq_1366 PF02581 Thiamine monophosphate synthase aq_1367 PF01066 CDP-alcohol phosphatidyltransferase aq_1367 PF00483 Nucleotidyl transferase aq_1368 PF01467 Cytidylyltransferase-like aq_1370 PF03330 Lytic transglycolase aq_1370 PF05036 Sporulation related domain aq_1372 PF14698 Argininosuccinate lyase C-terminal aq_1372 PF00206 Lyase aq_1373 PF00146 NADH dehydrogenase aq_1374 PF00146 NADH dehydrogenase aq_1375 PF13237 4Fe-4S dicluster domain aq_1377 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 aq_1378 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L aq_1379 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus aq_1379 PF00361 Proton-conducting membrane transporter aq_138 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region aq_138 PF01872 RibD C-terminal domain aq_1382 PF00361 Proton-conducting membrane transporter aq_1383 PF00361 Proton-conducting membrane transporter aq_1385 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 aq_1386 PF01734 Patatin-like phospholipase aq_1387 PF01022 Bacterial regulatory protein, arsR family aq_139 PF06574 FAD synthetase aq_139 PF01687 Riboflavin kinase aq_1390 PF01116 Fructose-bisphosphate aldolase class-II aq_1391 PF01609 Transposase DDE domain aq_1394 PF01068 ATP dependent DNA ligase domain aq_1394 PF04675 DNA ligase N terminus aq_1394 PF04679 ATP dependent DNA ligase C terminal region aq_1398 PF00694 Aconitase C-terminal domain aq_1400 PF03170 Bacterial cellulose synthase subunit aq_1401 PF01270 Glycosyl hydrolases family 8 aq_1403 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) aq_1404 PF13614 AAA domain aq_1407 PF07238 PilZ domain aq_1407 PF00535 Glycosyl transferase family 2 aq_1407 PF03552 Cellulose synthase aq_141 PF01230 HIT domain aq_1410 PF00291 Pyridoxal-phosphate dependent enzyme aq_1413 PF00133 tRNA synthetases class I (I, L, M and V) aq_1413 PF10458 Valyl tRNA synthetase tRNA binding arm aq_1413 PF08264 Anticodon-binding domain of tRNA aq_1418 PF01475 Ferric uptake regulator family aq_1419 PF12804 MobA-like NTP transferase domain aq_142 PF12870 Domain of unknown function (DUF4878) aq_1420 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain aq_1420 PF01464 Transglycosylase SLT domain aq_1421 PF11823 Protein of unknown function (DUF3343) aq_1421 PF01206 Sulfurtransferase TusA aq_1422 PF02811 PHP domain aq_1422 PF14716 Helix-hairpin-helix domain aq_1422 PF14791 DNA polymerase beta thumb aq_1423 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ aq_1424 PF04055 Radical SAM superfamily aq_1427 PF02684 Lipid-A-disaccharide synthetase aq_1429 PF02219 Methylenetetrahydrofolate reductase aq_1434 PF07963 Prokaryotic N-terminal methylation motif aq_1436 PF07963 Prokaryotic N-terminal methylation motif aq_1441 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle aq_1442 PF03707 Bacterial signalling protein N terminal repeat aq_1442 PF00990 Diguanylate cyclase, GGDEF domain aq_1442 PF00563 EAL domain aq_1444 PF01871 AMMECR1 aq_1445 PF00403 Heavy-metal-associated domain aq_1449 PF13344 Haloacid dehalogenase-like hydrolase aq_1449 PF00293 NUDIX domain aq_145 PF01075 Glycosyltransferase family 9 (heptosyltransferase) aq_1450 PF13180 PDZ domain aq_1450 PF17820 PDZ domain aq_1452 PF03979 Sigma-70 factor, region 1.1 aq_1452 PF00140 Sigma-70 factor, region 1.2 aq_1452 PF04539 Sigma-70 region 3 aq_1452 PF04542 Sigma-70 region 2 aq_1452 PF04545 Sigma-70, region 4 aq_1453 PF08495 FIST N domain aq_1455 PF00990 Diguanylate cyclase, GGDEF domain aq_1455 PF07694 5TMR of 5TMR-LYT aq_1458 PF08669 Glycine cleavage T-protein C-terminal barrel domain aq_1458 PF01571 Aminomethyltransferase folate-binding domain aq_1464 PF00849 RNA pseudouridylate synthase aq_1464 PF01479 S4 domain aq_1467 PF02457 DisA bacterial checkpoint controller nucleotide-binding aq_1468 PF00809 Pterin binding enzyme aq_147 PF02492 CobW/HypB/UreG, nucleotide-binding domain aq_147 PF07683 Cobalamin synthesis protein cobW C-terminal domain aq_1470 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain aq_1470 PF02785 Biotin carboxylase C-terminal domain aq_1470 PF00289 Biotin carboxylase, N-terminal domain aq_1472 PF03796 DnaB-like helicase C terminal domain aq_1472 PF00772 DnaB-like helicase N terminal domain aq_1474 PF00437 Type II/IV secretion system protein aq_1478 PF02132 RecR protein aq_1478 PF13662 Toprim domain aq_148 PF01791 DeoC/LacD family aldolase aq_1480 PF01066 CDP-alcohol phosphatidyltransferase aq_1482 PF00583 Acetyltransferase (GNAT) family aq_1482 PF13673 Acetyltransferase (GNAT) domain aq_1483 PF03548 Outer membrane lipoprotein carrier protein LolA aq_1484a PF00216 Bacterial DNA-binding protein aq_1485 PF00575 S1 RNA binding domain aq_1489 PF01746 tRNA (Guanine-1)-methyltransferase aq_1490 PF04546 Sigma-70, non-essential region aq_1490 PF03979 Sigma-70 factor, region 1.1 aq_1490 PF00140 Sigma-70 factor, region 1.2 aq_1490 PF04542 Sigma-70 region 2 aq_1490 PF04539 Sigma-70 region 3 aq_1490 PF04545 Sigma-70, region 4 aq_1493 PF01807 CHC2 zinc finger aq_1493 PF08275 DNA primase catalytic core, N-terminal domain aq_1494 PF03061 Thioesterase superfamily aq_1498 PF03652 Holliday junction resolvase aq_1499 PF02777 Iron/manganese superoxide dismutases, C-terminal domain aq_1499 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain aq_150 PF00285 Citrate synthase, C-terminal domain aq_1503 PF02254 TrkA-N domain aq_1503 PF02080 TrkA-C domain aq_1504 PF02386 Cation transport protein aq_1505 PF00268 Ribonucleotide reductase, small chain aq_1507 PF01596 O-methyltransferase aq_1509 PF12911 N-terminal TM domain of oligopeptide transport permease C aq_1509 PF00528 Binding-protein-dependent transport system inner membrane component aq_1512 PF00180 Isocitrate/isopropylmalate dehydrogenase aq_1517 PF00289 Biotin carboxylase, N-terminal domain aq_1517 PF02785 Biotin carboxylase C-terminal domain aq_1517 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain aq_152 PF00578 AhpC/TSA family aq_1520 PF02436 Conserved carboxylase domain aq_1520 PF00682 HMGL-like aq_1520 PF00364 Biotin-requiring enzyme aq_1526 PF09115 DNA polymerase III, delta subunit, C terminal aq_1527 PF04468 PSP1 C-terminal conserved region aq_1528 PF04055 Radical SAM superfamily aq_1530 PF02405 Permease MlaE aq_1531 PF09383 NIL domain aq_1531 PF00005 ABC transporter aq_1535 PF00557 Metallopeptidase family M24 aq_1535 PF01321 Creatinase/Prolidase N-terminal domain aq_1536 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) aq_1539 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term aq_154 PF01040 UbiA prenyltransferase family aq_1540 PF04551 GcpE protein aq_1546 PF00571 CBS domain aq_1546 PF01380 SIS domain aq_1547 PF00719 Inorganic pyrophosphatase aq_1548 PF00290 Tryptophan synthase alpha chain aq_1554 PF01791 DeoC/LacD family aldolase aq_1556 PF00291 Pyridoxal-phosphate dependent enzyme aq_156 PF04238 Protein of unknown function (DUF420) aq_1560 PF00025 ADP-ribosylation factor family aq_1563 PF00664 ABC transporter transmembrane region aq_1563 PF00005 ABC transporter aq_1565 PF01493 GXGXG motif aq_1565 PF00310 Glutamine amidotransferases class-II aq_1565 PF04898 Glutamate synthase central domain aq_1565 PF01645 Conserved region in glutamate synthase aq_1569 PF07690 Major Facilitator Superfamily aq_157 PF03938 Outer membrane protein (OmpH-like) aq_1575 PF01709 Transcriptional regulator aq_1578 PF01119 DNA mismatch repair protein, C-terminal domain aq_1578 PF08676 MutL C terminal dimerisation domain aq_1579 PF01464 Transglycosylase SLT domain aq_158 PF00293 NUDIX domain aq_1580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family aq_1582 PF02527 rRNA small subunit methyltransferase G aq_1583 PF07238 PilZ domain aq_1585 PF12704 MacB-like periplasmic core domain aq_1585 PF02687 FtsX-like permease family aq_1587 PF00430 ATP synthase B/B' CF(0) aq_1588 PF00213 ATP synthase delta (OSCP) subunit aq_1590 PF00334 Nucleoside diphosphate kinase aq_1591 PF00266 Aminotransferase class-V aq_1593 PF00266 Aminotransferase class-V aq_1595 PF18269 T3SS EscN ATPase C-terminal domain aq_1595 PF02874 ATP synthase alpha/beta family, beta-barrel domain aq_1595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain aq_1598 PF01207 Dihydrouridine synthase (Dus) aq_1599 PF00581 Rhodanese-like domain aq_1601 PF06750 Bacterial Peptidase A24 N-terminal domain aq_1601 PF01478 Type IV leader peptidase family aq_1602 PF02355 Protein export membrane protein aq_1602 PF07549 SecD/SecF GG Motif aq_1603 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein aq_1603 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus aq_1606 PF01063 Amino-transferase class IV aq_1607 PF00692 dUTPase aq_1610 PF04002 RadC-like JAB domain aq_1612 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase aq_1613 PF01634 ATP phosphoribosyltransferase aq_1614 PF00682 HMGL-like aq_1614 PF02436 Conserved carboxylase domain aq_1614 PF00364 Biotin-requiring enzyme aq_1618 PF03772 Competence protein aq_162 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) aq_1620 PF00549 CoA-ligase aq_1620 PF08442 ATP-grasp domain aq_1622 PF00549 CoA-ligase aq_1622 PF02629 CoA binding domain aq_1628 PF01367 5'-3' exonuclease, C-terminal SAM fold aq_1628 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain aq_1629 PF01261 Xylose isomerase-like TIM barrel aq_1630 PF02272 DHHA1 domain aq_1630 PF01368 DHH family aq_1634 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus aq_1634 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus aq_1636 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase aq_1636 PF14572 Phosphoribosyl synthetase-associated domain aq_1638 PF10437 Bacterial lipoate protein ligase C-terminus aq_1638 PF03099 Biotin/lipoate A/B protein ligase family aq_1639 PF02754 Cysteine-rich domain aq_1639 PF13183 4Fe-4S dicluster domain aq_164 PF00072 Response regulator receiver domain aq_164 PF00158 Sigma-54 interaction domain aq_164 PF02954 Bacterial regulatory protein, Fis family aq_1640 PF01609 Transposase DDE domain aq_1641 PF13439 Glycosyltransferase Family 4 aq_1641 PF00534 Glycosyl transferases group 1 aq_1641a PF00829 Ribosomal prokaryotic L21 protein aq_1642 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A aq_1644 PF00327 Ribosomal protein L30p/L7e aq_1645 PF00333 Ribosomal protein S5, N-terminal domain aq_1645 PF03719 Ribosomal protein S5, C-terminal domain aq_1648 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast aq_1649 PF00347 Ribosomal protein L6 aq_165 PF04452 RNA methyltransferase aq_1651 PF00410 Ribosomal protein S8 aq_1651a PF00253 Ribosomal protein S14p/S29e aq_1652 PF00673 ribosomal L5P family C-terminus aq_1652 PF00281 Ribosomal protein L5 aq_1653 PF00467 KOW motif aq_1653 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 aq_1654 PF00238 Ribosomal protein L14p/L23e aq_1656 PF02606 Tetraacyldisaccharide-1-P 4'-kinase aq_1657 PF01597 Glycine cleavage H-protein aq_1659 PF03744 6-carboxyhexanoate--CoA ligase aq_166 PF03807 NADP oxidoreductase coenzyme F420-dependent aq_166 PF14748 Pyrroline-5-carboxylate reductase dimerisation aq_1660 PF00132 Bacterial transferase hexapeptide (six repeats) aq_1661 PF12105 SpoU, rRNA methylase, C-terminal aq_1661 PF00588 SpoU rRNA Methylase family aq_1664 PF00289 Biotin carboxylase, N-terminal domain aq_1664 PF02785 Biotin carboxylase C-terminal domain aq_1664 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain aq_1665 PF00056 lactate/malate dehydrogenase, NAD binding domain aq_1665 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain aq_1667 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain aq_1667 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) aq_1667 PF03129 Anticodon binding domain aq_1671 PF00227 Proteasome subunit aq_1672 PF00004 ATPase family associated with various cellular activities (AAA) aq_1672 PF02861 Clp amino terminal domain, pathogenicity island component aq_1672 PF10431 C-terminal, D2-small domain, of ClpB protein aq_1672 PF07724 AAA domain (Cdc48 subfamily) aq_1672 PF17871 AAA lid domain aq_1677 PF02938 GAD domain aq_1677 PF00152 tRNA synthetases class II (D, K and N) aq_1677 PF01336 OB-fold nucleic acid binding domain aq_1679 PF05683 Fumarase C-terminus aq_1679 PF05681 Fumarate hydratase (Fumerase) aq_168 PF03193 RsgA GTPase aq_1681 PF11741 AMIN domain aq_1681 PF01520 N-acetylmuramoyl-L-alanine amidase aq_169 PF03193 RsgA GTPase aq_1693 PF03167 Uracil DNA glycosylase superfamily aq_1694 PF09312 SurA N-terminal domain aq_1694 PF00639 PPIC-type PPIASE domain aq_1695a PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase aq_170 PF00202 Aminotransferase class-III aq_1705 PF00483 Nucleotidyl transferase aq_1706 PF01569 PAP2 superfamily aq_1707 PF00677 Lumazine binding domain aq_1708 PF00365 Phosphofructokinase aq_1710 PF01717 Cobalamin-independent synthase, Catalytic domain aq_1710 PF08267 Cobalamin-independent synthase, N-terminal domain aq_1711 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain aq_1711 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain aq_1713 PF02119 Flagellar P-ring protein aq_1714 PF02107 Flagellar L-ring protein aq_1717 PF02801 Beta-ketoacyl synthase, C-terminal domain aq_1717 PF00109 Beta-ketoacyl synthase, N-terminal domain aq_1717a PF00550 Phosphopantetheine attachment site aq_1718 PF02545 Maf-like protein aq_1719 PF01814 Hemerythrin HHE cation binding domain aq_172 PF10576 Iron-sulfur binding domain of endonuclease III aq_172 PF00730 HhH-GPD superfamily base excision DNA repair protein aq_172 PF00633 Helix-hairpin-helix motif aq_1720 PF00448 SRP54-type protein, GTPase domain aq_1720 PF02978 Signal peptide binding domain aq_1720 PF02881 SRP54-type protein, helical bundle domain aq_1723 PF01142 tRNA pseudouridine synthase D (TruD) aq_1724 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family aq_1725 PF00009 Elongation factor Tu GTP binding domain aq_1725 PF03144 Elongation factor Tu domain 2 aq_1725 PF06421 GTP-binding protein LepA C-terminus aq_1725 PF00679 Elongation factor G C-terminus aq_1727 PF02558 Ketopantoate reductase PanE/ApbA aq_1727 PF08546 Ketopantoate reductase PanE/ApbA C terminal aq_1730 PF03484 tRNA synthetase B5 domain aq_1730 PF01588 Putative tRNA binding domain aq_1730 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain aq_1730 PF03483 B3/4 domain aq_1730 PF03147 Ferredoxin-fold anticodon binding domain aq_1731 PF01812 5-formyltetrahydrofolate cyclo-ligase family aq_1732 PF12072 Domain of unknown function (DUF3552) aq_1732 PF01966 HD domain aq_1732 PF00013 KH domain aq_1735 PF01556 DnaJ C terminal domain aq_1735 PF00684 DnaJ central domain aq_1735 PF00226 DnaJ domain aq_1739 PF02401 LytB protein aq_1742 PF00535 Glycosyl transferase family 2 aq_1744 PF00300 Histidine phosphatase superfamily (branch 1) aq_1747 PF02875 Mur ligase family, glutamate ligase domain aq_1747 PF08245 Mur ligase middle domain aq_1747 PF01225 Mur ligase family, catalytic domain aq_175 PF02096 60Kd inner membrane protein aq_1751 PF00579 tRNA synthetases class I (W and Y) aq_1751 PF01479 S4 domain aq_1753 PF08460 Bacterial SH3 domain aq_1753 PF01551 Peptidase family M23 aq_1754 PF01861 Branched-chain polyamine synthase A C-terminal domain aq_1755 PF02153 Prephenate dehydrogenase aq_1755 PF01842 ACT domain aq_1757 PF01618 MotA/TolQ/ExbB proton channel family aq_1758 PF00849 RNA pseudouridylate synthase aq_1758 PF01479 S4 domain aq_176 PF00468 Ribosomal protein L34 aq_1763 PF01658 Myo-inositol-1-phosphate synthase aq_1765 PF02780 Transketolase, C-terminal domain aq_1765 PF00456 Transketolase, thiamine diphosphate binding domain aq_1765 PF02779 Transketolase, pyrimidine binding domain aq_1767 PF01649 Ribosomal protein S20 aq_1768 PF01351 Ribonuclease HII aq_1769 PF02913 FAD linked oxidases, C-terminal domain aq_1769 PF01565 FAD binding domain aq_177 PF00137 ATP synthase subunit C aq_1770 PF00133 tRNA synthetases class I (I, L, M and V) aq_1770 PF08264 Anticodon-binding domain of tRNA aq_1772 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase aq_1773a PF01016 Ribosomal L27 protein aq_1774 PF03710 Glutamate-ammonia ligase adenylyltransferase aq_1774 PF08335 GlnD PII-uridylyltransferase aq_1777 PF05198 Translation initiation factor IF-3, N-terminal domain aq_1777 PF00707 Translation initiation factor IF-3, C-terminal domain aq_1780 PF05681 Fumarate hydratase (Fumerase) aq_1780 PF05683 Fumarase C-terminus aq_1782 PF00056 lactate/malate dehydrogenase, NAD binding domain aq_1782 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain aq_1784 PF00330 Aconitase family (aconitate hydratase) aq_1787 PF00218 Indole-3-glycerol phosphate synthase aq_1789 PF03023 Lipid II flippase MurJ aq_179 PF00119 ATP synthase A chain aq_1790 PF01950 Fructose-1,6-bisphosphatase aq_1792 PF00158 Sigma-54 interaction domain aq_1792 PF02954 Bacterial regulatory protein, Fis family aq_1792 PF01590 GAF domain aq_1794 PF13277 YmdB-like protein aq_1796 PF01464 Transglycosylase SLT domain aq_1796 PF14718 Soluble lytic murein transglycosylase L domain aq_1799 PF00581 Rhodanese-like domain aq_1800 PF03625 Domain of unknown function DUF302 aq_1803 PF00149 Calcineurin-like phosphoesterase aq_1803 PF02872 5'-nucleotidase, C-terminal domain aq_181 PF00977 Histidine biosynthesis protein aq_1812 PF01842 ACT domain aq_1812 PF00742 Homoserine dehydrogenase aq_1812 PF03447 Homoserine dehydrogenase, NAD binding domain aq_1814 PF02535 ZIP Zinc transporter aq_1815 PF01926 50S ribosome-binding GTPase aq_1816 PF00398 Ribosomal RNA adenine dimethylase aq_1818 PF00551 Formyl transferase aq_1818 PF01842 ACT domain aq_1822 PF03259 Roadblock/LC7 domain aq_1825 PF00989 PAS fold aq_1825 PF00512 His Kinase A (phospho-acceptor) domain aq_1825 PF18698 Histidine kinase sensor domain aq_1825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase aq_1825 PF00672 HAMP domain aq_1827 PF00842 Alanine racemase, C-terminal domain aq_1827 PF01168 Alanine racemase, N-terminal domain aq_1827a PF13194 Domain of unknown function (DUF4010) aq_1832 PF00177 Ribosomal protein S7p/S5e aq_1834 PF00164 Ribosomal protein S12/S23 aq_1836 PF00586 AIR synthase related protein, N-terminal domain aq_1836 PF02769 AIR synthase related protein, C-terminal domain aq_1836 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain aq_1837 PF01252 Signal peptidase (SPase) II aq_1838 PF01678 Diaminopimelate epimerase aq_1839 PF02472 Biopolymer transport protein ExbD/TolR aq_183a PF01192 RNA polymerase Rpb6 aq_184 PF00625 Guanylate kinase aq_1840 PF03462 PCRF domain aq_1840 PF00472 RF-1 domain aq_1844 PF04760 Translation initiation factor IF-2, N-terminal region aq_1844 PF08364 Bacterial translation initiation factor IF-2 associated region aq_1844 PF00009 Elongation factor Tu GTP binding domain aq_1844 PF11987 Translation-initiation factor 2 aq_1845 PF14332 Domain of unknown function (DUF4388) aq_1845 PF01978 Sugar-specific transcriptional regulator TrmB aq_185 PF00294 pfkB family carbohydrate kinase aq_185 PF01467 Cytidylyltransferase-like aq_1851 PF01842 ACT domain aq_1851 PF10369 Small subunit of acetolactate synthase aq_1853 PF02163 Peptidase family M50 aq_1854 PF13442 Cytochrome C oxidase, cbb3-type, subunit III aq_1855 PF12169 DNA polymerase III subunits gamma and tau domain III aq_1856 PF02151 UvrB/uvrC motif aq_1856 PF12344 Ultra-violet resistance protein B aq_1856 PF17757 UvrB interaction domain aq_1856 PF04851 Type III restriction enzyme, res subunit aq_1856 PF00271 Helicase conserved C-terminal domain aq_1857 PF01521 Iron-sulphur cluster biosynthesis aq_1859 PF06429 Flagellar basal body rod FlgEFG protein C-terminal aq_1859 PF00460 Flagella basal body rod protein aq_1859 PF07559 Flagellar basal body protein FlaE aq_186 PF00171 Aldehyde dehydrogenase family aq_1860 PF03748 Flagellar basal body-associated protein FliL aq_1863 PF00027 Cyclic nucleotide-binding domain aq_1863 PF00520 Ion transport protein aq_1866 PF02774 Semialdehyde dehydrogenase, dimerisation domain aq_1866 PF01118 Semialdehyde dehydrogenase, NAD binding domain aq_1869 PF13380 CoA binding domain aq_1870 PF07517 SecA DEAD-like domain aq_1870 PF01043 SecA preprotein cross-linking domain aq_1870 PF07516 SecA Wing and Scaffold domain aq_1875 PF01795 MraW methylase family aq_1877 PF00572 Ribosomal protein L13 aq_1878 PF00380 Ribosomal protein S9/S16 aq_1879 PF01118 Semialdehyde dehydrogenase, NAD binding domain aq_1879 PF02774 Semialdehyde dehydrogenase, dimerisation domain aq_1882 PF02768 DNA polymerase III beta subunit, C-terminal domain aq_1882 PF02767 DNA polymerase III beta subunit, central domain aq_1882 PF00712 DNA polymerase III beta subunit, N-terminal domain aq_1884 PF03641 Possible lysine decarboxylase aq_1886 PF12320 Type 5 capsule protein repressor C-terminal domain aq_1886 PF00149 Calcineurin-like phosphoesterase aq_1887 PF01171 PP-loop family aq_1888 PF00549 CoA-ligase aq_1888 PF02629 CoA binding domain aq_1889 PF02445 Quinolinate synthetase A protein aq_1890 PF08032 RNA 2'-O ribose methyltransferase substrate binding aq_1890 PF00588 SpoU rRNA Methylase family aq_1893 PF01063 Amino-transferase class IV aq_1894 PF05036 Sporulation related domain aq_1898 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain aq_1898 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain aq_1899 PF00535 Glycosyl transferase family 2 aq_1899b PF01850 PIN domain aq_1903 PF00266 Aminotransferase class-V aq_1905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain aq_1905 PF01842 ACT domain aq_1905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain aq_1907 PF00156 Phosphoribosyl transferase domain aq_1908 PF01926 50S ribosome-binding GTPase aq_1908 PF13167 GTP-binding GTPase N-terminal aq_1908 PF16360 GTP-binding GTPase Middle Region aq_1910 PF01966 HD domain aq_1916 PF00085 Thioredoxin aq_1917 PF07238 PilZ domain aq_1919 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal aq_1919 PF01926 50S ribosome-binding GTPase aq_192 PF07724 AAA domain (Cdc48 subfamily) aq_192 PF10431 C-terminal, D2-small domain, of ClpB protein aq_1920 PF00813 FliP family aq_1922 PF01959 3-dehydroquinate synthase II aq_1924 PF03309 Type III pantothenate kinase aq_1925 PF02538 Hydantoinase B/oxoprolinase aq_1928 PF00009 Elongation factor Tu GTP binding domain aq_1928 PF03143 Elongation factor Tu C-terminal domain aq_1928 PF03144 Elongation factor Tu domain 2 aq_1930a PF00471 Ribosomal protein L33 aq_1931 PF07009 NusG domain II aq_1931 PF02357 Transcription termination factor nusG aq_1931 PF00467 KOW motif aq_1933 PF03946 Ribosomal protein L11, N-terminal domain aq_1933 PF00298 Ribosomal protein L11, RNA binding domain aq_1935 PF00687 Ribosomal protein L1p/L10e family aq_1936 PF00466 Ribosomal protein L10 aq_1937 PF00542 Ribosomal protein L7/L12 C-terminal domain aq_1937 PF16320 Ribosomal protein L7/L12 dimerisation domain aq_1939 PF04563 RNA polymerase beta subunit aq_1939 PF04561 RNA polymerase Rpb2, domain 2 aq_1939 PF04560 RNA polymerase Rpb2, domain 7 aq_1939 PF04565 RNA polymerase Rpb2, domain 3 aq_1939 PF10385 RNA polymerase beta subunit external 1 domain aq_1939 PF00562 RNA polymerase Rpb2, domain 6 aq_1945 PF04998 RNA polymerase Rpb1, domain 5 aq_1945 PF04997 RNA polymerase Rpb1, domain 1 aq_1945 PF00623 RNA polymerase Rpb1, domain 2 aq_1945 PF04983 RNA polymerase Rpb1, domain 3 aq_1945 PF05000 RNA polymerase Rpb1, domain 4 aq_1950 PF00082 Subtilase family aq_1952 PF03099 Biotin/lipoate A/B protein ligase family aq_1953 PF05866 Endodeoxyribonuclease RusA aq_1954 PF01245 Ribosomal protein L19 aq_1955 PF01351 Ribonuclease HII aq_1958 PF04055 Radical SAM superfamily aq_1958 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family aq_196 PF00591 Glycosyl transferase family, a/b domain aq_196 PF02885 Glycosyl transferase family, helical bundle domain aq_1960 PF08543 Phosphomethylpyrimidine kinase aq_1961 PF01311 Bacterial export proteins, family 1 aq_1962 PF01313 Bacterial export proteins, family 3 aq_1963 PF02142 MGS-like domain aq_1963 PF01808 AICARFT/IMPCHase bienzyme aq_1964 PF17820 PDZ domain aq_1964 PF02163 Peptidase family M50 aq_1965 PF01894 Uncharacterised protein family UPF0047 aq_1967 PF01612 3'-5' exonuclease aq_1967 PF00476 DNA polymerase family A aq_1968 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase aq_1968 PF01502 Phosphoribosyl-AMP cyclohydrolase aq_1971 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain aq_1971 PF00437 Type II/IV secretion system protein aq_1973 PF02548 Ketopantoate hydroxymethyltransferase aq_1975 PF03079 ARD/ARD' family aq_1978 PF07883 Cupin domain aq_1979 PF00596 Class II Aldolase and Adducin N-terminal domain aq_1983 PF00459 Inositol monophosphatase family aq_1985 PF01121 Dephospho-CoA kinase aq_1986 PF02698 DUF218 domain aq_1988 PF01618 MotA/TolQ/ExbB proton channel family aq_1990 PF00300 Histidine phosphatase superfamily (branch 1) aq_1991 PF01435 Peptidase family M48 aq_1994 PF01926 50S ribosome-binding GTPase aq_1994 PF07650 KH domain aq_1996 PF02464 Competence-damaged protein aq_1996 PF00994 Probable molybdopterin binding domain aq_1996 PF18146 Damage-inducible protein CinA KH domain aq_1997 PF01738 Dienelactone hydrolase family aq_1998 PF00669 Bacterial flagellin N-terminal helical region aq_1998 PF00700 Bacterial flagellin C-terminal helical region aq_2001 PF07196 Flagellin hook IN motif aq_2001 PF07195 Flagellar hook-associated protein 2 C-terminus aq_2001 PF02465 Flagellar hook-associated protein 2 N-terminus aq_2004 PF01571 Aminomethyltransferase folate-binding domain aq_2005 PF01571 Aminomethyltransferase folate-binding domain aq_2007 PF00318 Ribosomal protein S2 aq_2009 PF01430 Hsp33 protein aq_2013 PF01894 Uncharacterised protein family UPF0047 aq_2014 PF01312 FlhB HrpN YscU SpaS Family aq_2016 PF12849 PBP superfamily domain aq_2018 PF00528 Binding-protein-dependent transport system inner membrane component aq_2019 PF00528 Binding-protein-dependent transport system inner membrane component aq_202 PF01725 Ham1 family aq_2020 PF02635 DsrE/DsrF-like family aq_2021 PF01523 Putative modulator of DNA gyrase aq_2023 PF00571 CBS domain aq_2023 PF00478 IMP dehydrogenase / GMP reductase domain aq_2027 PF01966 HD domain aq_2032 PF00009 Elongation factor Tu GTP binding domain aq_2032 PF03144 Elongation factor Tu domain 2 aq_2032 PF11987 Translation-initiation factor 2 aq_2032 PF04760 Translation initiation factor IF-2, N-terminal region aq_2035 PF04055 Radical SAM superfamily aq_2036 PF07314 Protein of unknown function (DUF1461) aq_2038 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain aq_2038 PF02874 ATP synthase alpha/beta family, beta-barrel domain aq_2041 PF00231 ATP synthase aq_2042 PF01281 Ribosomal protein L9, N-terminal domain aq_2042 PF03948 Ribosomal protein L9, C-terminal domain aq_2043 PF01578 Cytochrome C assembly protein aq_2045 PF08245 Mur ligase middle domain aq_2045 PF02875 Mur ligase family, glutamate ligase domain aq_2046 PF08206 Ribonuclease B OB domain aq_2046 PF00773 RNB domain aq_2046 PF17876 Cold shock domain aq_2046 PF00575 S1 RNA binding domain aq_2051 PF00460 Flagella basal body rod protein aq_2051 PF06429 Flagellar basal body rod FlgEFG protein C-terminal aq_2053 PF17191 RecG wedge domain aq_2053 PF00271 Helicase conserved C-terminal domain aq_2053 PF00270 DEAD/DEAH box helicase aq_2054 PF04357 TamB, inner membrane protein subunit of TAM complex aq_2057 PF13195 Protein of unknown function (DUF4011) aq_2057 PF13086 AAA domain aq_2057 PF13087 AAA domain aq_2059 PF00156 Phosphoribosyl transferase domain aq_206 PF04324 BFD-like [2Fe-2S] binding domain aq_206 PF07992 Pyridine nucleotide-disulphide oxidoreductase aq_206 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain aq_206 PF01077 Nitrite and sulphite reductase 4Fe-4S domain aq_206 PF18267 Rubredoxin NAD+ reductase C-terminal domain aq_2060 PF01026 TatD related DNase aq_2064 PF07992 Pyridine nucleotide-disulphide oxidoreductase aq_2064 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster aq_2066 PF09335 SNARE associated Golgi protein aq_2068 PF00696 Amino acid kinase family aq_2069 PF01018 GTP1/OBG aq_2069 PF01926 50S ribosome-binding GTPase aq_207 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases aq_2071 PF10672 S-adenosylmethionine-dependent methyltransferase aq_2071 PF17785 PUA-like domain aq_2073 PF16916 Dimerisation domain of Zinc Transporter aq_2073 PF01545 Cation efflux family aq_2075 PF02875 Mur ligase family, glutamate ligase domain aq_2075 PF08245 Mur ligase middle domain aq_2076 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase aq_2077 PF00209 Sodium:neurotransmitter symporter family aq_2080 PF01343 Peptidase family S49 aq_2084 PF00155 Aminotransferase class I and II aq_2087 PF06146 Phosphate-starvation-inducible E aq_209 PF00591 Glycosyl transferase family, a/b domain aq_209 PF02885 Glycosyl transferase family, helical bundle domain aq_2090 PF08502 LeuA allosteric (dimerisation) domain aq_2090 PF00682 HMGL-like aq_2094 PF00155 Aminotransferase class I and II aq_2095 PF01258 Prokaryotic dksA/traR C4-type zinc finger aq_2096 PF00258 Flavodoxin aq_2099 PF00883 Cytosol aminopeptidase family, catalytic domain aq_2099 PF02789 Cytosol aminopeptidase family, N-terminal domain aq_2101 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain aq_2101 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain aq_2103 PF16177 Acetyl-coenzyme A synthetase N-terminus aq_2103 PF00501 AMP-binding enzyme aq_2103 PF13193 AMP-binding enzyme C-terminal domain aq_2104 PF13193 AMP-binding enzyme C-terminal domain aq_2104 PF16177 Acetyl-coenzyme A synthetase N-terminus aq_2104 PF00501 AMP-binding enzyme aq_2106 PF00474 Sodium:solute symporter family aq_2108 PF02811 PHP domain aq_2108 PF00929 Exonuclease aq_2108 PF14579 Helix-hairpin-helix motif aq_2108 PF17657 Bacterial DNA polymerase III alpha subunit finger domain aq_2108 PF07733 Bacterial DNA polymerase III alpha NTPase domain aq_2109 PF00490 Delta-aminolevulinic acid dehydratase aq_211 PF00042 Globin aq_2110 PF00850 Histone deacetylase domain aq_2113 PF01464 Transglycosylase SLT domain aq_2113 PF10145 Phage-related minor tail protein aq_2113 PF01551 Peptidase family M23 aq_2114 PF01008 Initiation factor 2 subunit family aq_2114 PF03061 Thioesterase superfamily aq_2115 PF00534 Glycosyl transferases group 1 aq_2115 PF13439 Glycosyltransferase Family 4 aq_2117 PF01259 SAICAR synthetase aq_2118 PF07963 Prokaryotic N-terminal methylation motif aq_2119 PF02769 AIR synthase related protein, C-terminal domain aq_2119 PF00586 AIR synthase related protein, N-terminal domain aq_212 PF02560 Cyanate lyase C-terminal domain aq_212 PF01381 Helix-turn-helix aq_2120 PF03471 Transporter associated domain aq_2120 PF00571 CBS domain aq_2122 PF08352 Oligopeptide/dipeptide transporter, C-terminal region aq_2122 PF00005 ABC transporter aq_2124 PF04055 Radical SAM superfamily aq_2124 PF06969 HemN C-terminal domain aq_2126 PF01541 GIY-YIG catalytic domain aq_2126 PF08459 UvrC Helix-hairpin-helix N-terminal aq_2129 PF01758 Sodium Bile acid symporter family aq_213 PF00543 Nitrogen regulatory protein P-II aq_2131 PF02911 Formyl transferase, C-terminal domain aq_2131 PF00551 Formyl transferase aq_2132 PF02569 Pantoate-beta-alanine ligase aq_2135 PF00753 Metallo-beta-lactamase superfamily aq_2137 PF00005 ABC transporter aq_2137 PF12857 TOBE-like domain aq_2138 PF00561 alpha/beta hydrolase fold aq_2139 PF08241 Methyltransferase domain aq_2141 PF05746 DALR anticodon binding domain aq_2141 PF02092 Glycyl-tRNA synthetase beta subunit aq_2142 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain aq_2142 PF02896 PEP-utilising enzyme, TIM barrel domain aq_2142 PF00391 PEP-utilising enzyme, mobile domain aq_2146 PF03190 Protein of unknown function, DUF255 aq_2147 PF00691 OmpA family aq_215 PF07690 Major Facilitator Superfamily aq_2150 PF00154 recA bacterial DNA recombination protein aq_2151 PF00437 Type II/IV secretion system protein aq_2153 PF02224 Cytidylate kinase aq_2154 PF01066 CDP-alcohol phosphatidyltransferase aq_2155 PF01368 DHH family aq_2155 PF17768 RecJ OB domain aq_2155 PF02272 DHHA1 domain aq_2155 PF10141 Single-strand DNA-specific exonuclease, C terminal domain aq_2157 PF09988 Uncharacterized metal-binding protein (DUF2227) aq_2158 PF01966 HD domain aq_2158 PF01743 Poly A polymerase head domain aq_2158 PF12627 Probable RNA and SrmB- binding site of polymerase A aq_2159 PF01230 HIT domain aq_2160 PF00005 ABC transporter aq_2160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region aq_217 PF00384 Molybdopterin oxidoreductase aq_217 PF04879 Molybdopterin oxidoreductase Fe4S4 domain aq_217 PF01568 Molydopterin dinucleotide binding domain aq_2170 PF02146 Sir2 family aq_2172 PF06835 Lipopolysaccharide-assembly, LptC-related aq_2174 PF00216 Bacterial DNA-binding protein aq_2175 PF03170 Bacterial cellulose synthase subunit aq_2177 PF01202 Shikimate kinase aq_2178 PF05690 Thiazole biosynthesis protein ThiG aq_2179 PF00440 Bacterial regulatory proteins, tetR family aq_218 PF02954 Bacterial regulatory protein, Fis family aq_218 PF00158 Sigma-54 interaction domain aq_218 PF01590 GAF domain aq_2181 PF02391 MoaE protein aq_2183 PF06463 Molybdenum Cofactor Synthesis C aq_2183 PF04055 Radical SAM superfamily aq_2185 PF00440 Bacterial regulatory proteins, tetR family aq_2186 PF07992 Pyridine nucleotide-disulphide oxidoreductase aq_2188 PF00510 Cytochrome c oxidase subunit III aq_2190 PF00116 Cytochrome C oxidase subunit II, periplasmic domain aq_2191 PF00510 Cytochrome c oxidase subunit III aq_2191 PF00115 Cytochrome C and Quinol oxidase polypeptide I aq_2192 PF00115 Cytochrome C and Quinol oxidase polypeptide I aq_2195 PF02673 Bacitracin resistance protein BacA aq_2199 PF00166 Chaperonin 10 Kd subunit aq_220 PF00692 dUTPase aq_2200 PF00118 TCP-1/cpn60 chaperonin family aq_2203 PF11967 Recombination protein O N terminal aq_2203 PF02565 Recombination protein O C terminal aq_221 PF00575 S1 RNA binding domain aq_221 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain aq_221 PF00013 KH domain aq_221 PF03725 3' exoribonuclease family, domain 2 aq_221 PF01138 3' exoribonuclease family, domain 1 aq_226a PF00312 Ribosomal protein S15 aq_227 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase aq_230 PF02954 Bacterial regulatory protein, Fis family aq_230 PF00072 Response regulator receiver domain aq_230 PF00158 Sigma-54 interaction domain aq_231 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase aq_231 PF00989 PAS fold aq_231 PF08447 PAS fold aq_231 PF00512 His Kinase A (phospho-acceptor) domain aq_232 PF10518 TAT (twin-arginine translocation) pathway signal sequence aq_232 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding aq_232 PF07992 Pyridine nucleotide-disulphide oxidoreductase aq_235 PF07992 Pyridine nucleotide-disulphide oxidoreductase aq_235 PF10518 TAT (twin-arginine translocation) pathway signal sequence aq_235 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding aq_236 PF02540 NAD synthase aq_236 PF00958 GMP synthase C terminal domain aq_236 PF00117 Glutamine amidotransferase class-I aq_238 PF00080 Copper/zinc superoxide dismutase (SODC) aq_239 PF01227 GTP cyclohydrolase I aq_240 PF07726 ATPase family associated with various cellular activities (AAA) aq_240 PF17863 AAA lid domain aq_242 PF00004 ATPase family associated with various cellular activities (AAA) aq_242 PF05362 Lon protease (S16) C-terminal proteolytic domain aq_242 PF02190 ATP-dependent protease La (LON) substrate-binding domain aq_244 PF00180 Isocitrate/isopropylmalate dehydrogenase aq_245 PF02222 ATP-grasp domain aq_245 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain aq_247 PF01425 Amidase aq_250 PF01258 Prokaryotic dksA/traR C4-type zinc finger aq_253 PF01467 Cytidylyltransferase-like aq_254 PF02675 S-adenosylmethionine decarboxylase aq_257 PF05958 tRNA (Uracil-5-)-methyltransferase aq_259 PF13184 NusA-like KH domain aq_259 PF08529 NusA N-terminal domain aq_259 PF00575 S1 RNA binding domain aq_260 PF17384 RimP C-terminal SH3 domain aq_260 PF02576 RimP N-terminal domain aq_262 PF05958 tRNA (Uracil-5-)-methyltransferase aq_262 PF01938 TRAM domain aq_263 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain aq_263 PF03900 Porphobilinogen deaminase, C-terminal domain aq_264 PF03099 Biotin/lipoate A/B protein ligase family aq_265 PF00990 Diguanylate cyclase, GGDEF domain aq_268 PF02082 Transcriptional regulator aq_269 PF01242 6-pyruvoyl tetrahydropterin synthase aq_270 PF01790 Prolipoprotein diacylglyceryl transferase aq_273 PF00155 Aminotransferase class I and II aq_274 PF01168 Alanine racemase, N-terminal domain aq_278 PF01869 BadF/BadG/BcrA/BcrD ATPase family aq_281 PF00440 Bacterial regulatory proteins, tetR family aq_282 PF00730 HhH-GPD superfamily base excision DNA repair protein aq_282 PF00633 Helix-hairpin-helix motif aq_282 PF10576 Iron-sulfur binding domain of endonuclease III aq_283 PF02577 Bifunctional nuclease aq_284 PF00919 Uncharacterized protein family UPF0004 aq_284 PF01938 TRAM domain aq_284 PF04055 Radical SAM superfamily aq_287 PF01668 SmpB protein aq_291 PF13335 Magnesium chelatase, subunit ChlI C-terminal aq_291 PF01078 Magnesium chelatase, subunit ChlI aq_293 PF06146 Phosphate-starvation-inducible E aq_296 PF12704 MacB-like periplasmic core domain aq_296 PF02687 FtsX-like permease family aq_297 PF00005 ABC transporter aq_298 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) aq_298 PF02403 Seryl-tRNA synthetase N-terminal domain aq_301 PF01380 SIS domain aq_305 PF08264 Anticodon-binding domain of tRNA aq_305 PF00133 tRNA synthetases class I (I, L, M and V) aq_308 PF05190 MutS family domain IV aq_308 PF00488 MutS domain V aq_308 PF05192 MutS domain III aq_308 PF05188 MutS domain II aq_308 PF01624 MutS domain I aq_313 PF02621 Menaquinone biosynthesis aq_314 PF04608 Phosphatidylglycerophosphatase A aq_316 PF00512 His Kinase A (phospho-acceptor) domain aq_316 PF16736 Single Cache-like aq_316 PF00989 PAS fold aq_316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase aq_319 PF00072 Response regulator receiver domain aq_319 PF00486 Transcriptional regulatory protein, C terminal aq_322 PF08299 Bacterial dnaA protein helix-turn-helix aq_322 PF00308 Bacterial dnaA protein aq_323 PF00248 Aldo/keto reductase family aq_324 PF02195 ParB-like nuclease domain aq_324 PF17762 HTH domain found in ParB protein aq_325 PF01177 Asp/Glu/Hydantoin racemase aq_326 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) aq_328 PF09123 Domain of unknown function (DUF1931) aq_334 PF01208 Uroporphyrinogen decarboxylase (URO-D) aq_337 PF00459 Inositol monophosphatase family aq_338 PF01209 ubiE/COQ5 methyltransferase family aq_341 PF00360 Phytochrome region aq_341 PF00990 Diguanylate cyclase, GGDEF domain aq_341 PF01590 GAF domain aq_341 PF00563 EAL domain aq_342 PF03819 MazG nucleotide pyrophosphohydrolase domain aq_343 PF02374 Anion-transporting ATPase aq_344 PF01370 NAD dependent epimerase/dehydratase family aq_346 PF01195 Peptidyl-tRNA hydrolase aq_348 PF14693 Ribosomal protein TL5, C-terminal domain aq_350 PF00925 GTP cyclohydrolase II aq_350 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase aq_351 PF13603 Leucyl-tRNA synthetase, Domain 2 aq_351 PF00133 tRNA synthetases class I (I, L, M and V) aq_355 PF02405 Permease MlaE aq_356 PF08502 LeuA allosteric (dimerisation) domain aq_356 PF00682 HMGL-like aq_358 PF06733 DEAD_2 aq_358 PF13307 Helicase C-terminal domain aq_359 PF03739 Lipopolysaccharide export system permease LptF/LptG aq_360 PF00121 Triosephosphate isomerase aq_364 PF01042 Endoribonuclease L-PSP aq_365 PF04073 Aminoacyl-tRNA editing domain aq_365 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) aq_365 PF03129 Anticodon binding domain aq_367 PF08448 PAS fold aq_367 PF00990 Diguanylate cyclase, GGDEF domain aq_367 PF00563 EAL domain aq_369 PF01867 CRISPR associated protein Cas1 aq_371 PF18019 HD domain aq_372 PF09706 CRISPR-associated protein (Cas_CXXC_CXXC) aq_377 PF09620 CRISPR-associated protein (Cas_csx3) aq_384 PF09701 CRISPR-associated protein (Cas_Cmr5) aq_389 PF13686 DsrE/DsrF/DrsH-like family aq_395 PF07992 Pyridine nucleotide-disulphide oxidoreductase aq_395 PF04324 BFD-like [2Fe-2S] binding domain aq_402 PF01597 Glycine cleavage H-protein aq_404 PF13288 DXP reductoisomerase C-terminal domain aq_404 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase aq_404 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain aq_407 PF00890 FAD binding domain aq_409 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain aq_409 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain aq_410 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain aq_410 PF00117 Glutamine amidotransferase class-I aq_411 PF12627 Probable RNA and SrmB- binding site of polymerase A aq_411 PF01966 HD domain aq_411 PF01743 Poly A polymerase head domain aq_413 PF00005 ABC transporter aq_413 PF12399 Branched-chain amino acid ATP-binding cassette transporter aq_415 PF02254 TrkA-N domain aq_415 PF02080 TrkA-C domain aq_415 PF00999 Sodium/hydrogen exchanger family aq_416 PF04055 Radical SAM superfamily aq_417 PF00005 ABC transporter aq_418 PF07963 Prokaryotic N-terminal methylation motif aq_418 PF08334 Type II secretion system (T2SS), protein G aq_421 PF00155 Aminotransferase class I and II aq_422 PF01588 Putative tRNA binding domain aq_422 PF09334 tRNA synthetases class I (M) aq_422 PF00133 tRNA synthetases class I (I, L, M and V) aq_423 PF02616 Segregation and condensation protein ScpA aq_425 PF00291 Pyridoxal-phosphate dependent enzyme aq_428 PF02580 D-Tyr-tRNA(Tyr) deacylase aq_429 PF00990 Diguanylate cyclase, GGDEF domain aq_433 PF01025 GrpE aq_434 PF02782 FGGY family of carbohydrate kinases, C-terminal domain aq_434 PF00370 FGGY family of carbohydrate kinases, N-terminal domain aq_436 PF01872 RibD C-terminal domain aq_437 PF00384 Molybdopterin oxidoreductase aq_437 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region aq_437 PF01568 Molydopterin dinucleotide binding domain aq_437 PF13237 4Fe-4S dicluster domain aq_437 PF04879 Molybdopterin oxidoreductase Fe4S4 domain aq_438 PF00571 CBS domain aq_445 PF17848 Acetyl-coA carboxylase zinc finger domain aq_445 PF01039 Carboxyl transferase domain aq_447 PF02308 MgtC family aq_448 PF02641 Uncharacterized ACR, COG1993 aq_449 PF02537 CrcB-like protein, Camphor Resistance (CrcB) aq_450 PF02641 Uncharacterized ACR, COG1993 aq_451 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain aq_451 PF00205 Thiamine pyrophosphate enzyme, central domain aq_451 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain aq_453 PF03631 Virulence factor BrkB aq_454 PF04055 Radical SAM superfamily aq_454 PF12544 Lysine-2,3-aminomutase aq_458 PF00578 AhpC/TSA family aq_461 PF02934 GatB/GatE catalytic domain aq_461 PF02637 GatB domain aq_468 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion aq_469 PF00873 AcrB/AcrD/AcrF family aq_474 PF04055 Radical SAM superfamily aq_474 PF00919 Uncharacterized protein family UPF0004 aq_476 PF02261 Aspartate decarboxylase aq_477 PF00581 Rhodanese-like domain aq_478 PF08668 HDOD domain aq_478 PF00563 EAL domain aq_479 PF00464 Serine hydroxymethyltransferase aq_481 PF00528 Binding-protein-dependent transport system inner membrane component aq_484 PF00113 Enolase, C-terminal TIM barrel domain aq_484 PF03952 Enolase, N-terminal domain aq_486 PF10417 C-terminal domain of 1-Cys peroxiredoxin aq_486 PF00578 AhpC/TSA family aq_488 PF08534 Redoxin aq_490 PF13545 Crp-like helix-turn-helix domain aq_490 PF00027 Cyclic nucleotide-binding domain aq_495 PF00578 AhpC/TSA family aq_496 PF00730 HhH-GPD superfamily base excision DNA repair protein aq_496 PF00633 Helix-hairpin-helix motif aq_496 PF10576 Iron-sulfur binding domain of endonuclease III aq_497 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain aq_497 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain aq_498 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase aq_498 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain aq_499 PF02195 ParB-like nuclease domain aq_499 PF17762 HTH domain found in ParB protein aq_500 PF07992 Pyridine nucleotide-disulphide oxidoreductase aq_501 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II aq_501 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III aq_501 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain aq_501 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I aq_507 PF01909 Nucleotidyltransferase domain aq_510 PF05175 Methyltransferase small domain aq_511 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain aq_511 PF01565 FAD binding domain aq_512 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain aq_512 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III aq_512 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II aq_512 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I aq_515 PF00534 Glycosyl transferases group 1 aq_515 PF13439 Glycosyltransferase Family 4 aq_516 PF13439 Glycosyltransferase Family 4 aq_518 PF04321 RmlD substrate binding domain aq_519 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 aq_519 PF00953 Glycosyl transferase family 4 aq_520 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain aq_520 PF01565 FAD binding domain aq_521 PF07478 D-ala D-ala ligase C-terminus aq_521 PF01820 D-ala D-ala ligase N-terminus aq_523 PF02491 SHS2 domain inserted in FTSA aq_525 PF00091 Tubulin/FtsZ family, GTPase domain aq_525 PF12327 FtsZ family, C-terminal domain aq_527 PF01967 MoaC family aq_528 PF02441 Flavoprotein aq_533 PF10672 S-adenosylmethionine-dependent methyltransferase aq_533 PF17785 PUA-like domain aq_538 PF14602 Hexapeptide repeat of succinyl-transferase aq_538 PF00132 Bacterial transferase hexapeptide (six repeats) aq_539 PF03739 Lipopolysaccharide export system permease LptF/LptG aq_540 PF01914 MarC family integral membrane protein aq_542 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase aq_542 PF01676 Metalloenzyme superfamily aq_547 PF07687 Peptidase dimerisation domain aq_547 PF01546 Peptidase family M20/M25/M40 aq_548 PF04493 Endonuclease V aq_549 PF00117 Glutamine amidotransferase class-I aq_551 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit aq_551 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit aq_552 PF18073 Rubredoxin metal binding domain aq_553 PF13085 2Fe-2S iron-sulfur cluster binding domain aq_553 PF13183 4Fe-4S dicluster domain aq_554 PF00849 RNA pseudouridylate synthase aq_554 PF01479 S4 domain aq_556 PF00905 Penicillin binding protein transpeptidase domain aq_556 PF03717 Penicillin-binding Protein dimerisation domain aq_558 PF02581 Thiamine monophosphate synthase aq_561 PF13175 AAA ATPase domain aq_563 PF00990 Diguanylate cyclase, GGDEF domain aq_565 PF00294 pfkB family carbohydrate kinase aq_566 PF03099 Biotin/lipoate A/B protein ligase family aq_566 PF08279 HTH domain aq_566 PF02237 Biotin protein ligase C terminal domain aq_568 PF01048 Phosphorylase superfamily aq_573 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region aq_573 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit aq_573 PF10531 SLBB domain aq_576 PF03793 PASTA domain aq_576 PF00069 Protein kinase domain aq_579 PF01327 Polypeptide deformylase aq_582 PF00425 chorismate binding enzyme aq_582 PF04715 Anthranilate synthase component I, N terminal region aq_585 PF00263 Bacterial type II and III secretion system protein aq_585 PF11741 AMIN domain aq_585 PF07660 Secretin and TonB N terminus short domain aq_585 PF03958 Bacterial type II/III secretion system short domain aq_587 PF01979 Amidohydrolase family aq_589 PF00483 Nucleotidyl transferase aq_589 PF01050 Mannose-6-phosphate isomerase aq_591 PF03745 Domain of unknown function (DUF309) aq_594 PF00890 FAD binding domain aq_594 PF02910 Fumarate reductase flavoprotein C-term aq_597 PF00206 Lyase aq_597 PF10397 Adenylosuccinate lyase C-terminus aq_599 PF04552 Sigma-54, DNA binding domain aq_599 PF00309 Sigma-54 factor, Activator interacting domain (AID) aq_599 PF04963 Sigma-54 factor, core binding domain aq_604 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 aq_604 PF00132 Bacterial transferase hexapeptide (six repeats) aq_607 PF00483 Nucleotidyl transferase aq_607 PF00132 Bacterial transferase hexapeptide (six repeats) aq_608 PF00291 Pyridoxal-phosphate dependent enzyme aq_609 PF01926 50S ribosome-binding GTPase aq_609 PF06071 Protein of unknown function (DUF933) aq_613 PF00271 Helicase conserved C-terminal domain aq_613 PF00270 DEAD/DEAH box helicase aq_615 PF05433 Glycine zipper 2TM domain aq_616 PF09123 Domain of unknown function (DUF1931) aq_618 PF01965 DJ-1/PfpI family aq_619 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment aq_619 PF01297 Zinc-uptake complex component A periplasmic aq_620 PF00005 ABC transporter aq_621 PF00950 ABC 3 transport family aq_624 PF00912 Transglycosylase aq_624 PF00905 Penicillin binding protein transpeptidase domain aq_626 PF00155 Aminotransferase class I and II aq_629 PF06470 SMC proteins Flexible Hinge Domain aq_629 PF02463 RecF/RecN/SMC N terminal domain aq_632 PF16199 Radical_SAM C-terminal domain aq_632 PF04055 Radical SAM superfamily aq_633 PF03119 NAD-dependent DNA ligase C4 zinc finger domain aq_633 PF03120 NAD-dependent DNA ligase OB-fold domain aq_633 PF00533 BRCA1 C Terminus (BRCT) domain aq_633 PF12826 Helix-hairpin-helix motif aq_633 PF01653 NAD-dependent DNA ligase adenylation domain aq_638 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family aq_638 PF03466 LysR substrate binding domain aq_640 PF02511 Thymidylate synthase complementing protein aq_642 PF01137 RNA 3'-terminal phosphate cyclase aq_642 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain aq_648 PF04055 Radical SAM superfamily aq_651 PF03481 Putative GTP-binding controlling metal-binding aq_651 PF01300 Telomere recombination aq_652 PF01476 LysM domain aq_652 PF01551 Peptidase family M23 aq_653 PF01706 FliG C-terminal domain aq_653 PF14842 FliG N-terminal domain aq_653 PF14841 FliG middle domain aq_655 PF13085 2Fe-2S iron-sulfur cluster binding domain aq_657 PF01131 DNA topoisomerase aq_657 PF01751 Toprim domain aq_660 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit aq_660 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal aq_662 PF00374 Nickel-dependent hydrogenase aq_665 PF01292 Prokaryotic cytochrome b561 aq_667 PF01750 Hydrogenase maturation protease aq_668 PF07449 Hydrogenase-1 expression protein HyaE aq_671 PF02492 CobW/HypB/UreG, nucleotide-binding domain aq_672 PF00708 Acylphosphatase aq_672 PF17788 HypF Kae1-like domain aq_672 PF01300 Telomere recombination aq_672 PF07503 HypF finger aq_673 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain aq_674 PF05175 Methyltransferase small domain aq_674 PF08468 Methyltransferase small domain N-terminal aq_676 PF02660 Glycerol-3-phosphate acyltransferase aq_679 PF00306 ATP synthase alpha/beta chain, C terminal domain aq_679 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain aq_679 PF02874 ATP synthase alpha/beta family, beta-barrel domain aq_682 PF17886 HSP20-like domain found in ArsA aq_682 PF02374 Anion-transporting ATPase aq_684 PF00149 Calcineurin-like phosphoesterase aq_685 PF01451 Low molecular weight phosphotyrosine protein phosphatase aq_686 PF00005 ABC transporter aq_686 PF17755 UvrA DNA-binding domain aq_686 PF17760 UvrA interaction domain aq_689 PF17151 Periplasmic sensor domain aq_689 PF00990 Diguanylate cyclase, GGDEF domain aq_691 PF01134 Glucose inhibited division protein A aq_692 PF02348 Cytidylyltransferase aq_693 PF07396 Phosphate-selective porin O and P aq_695 PF00873 AcrB/AcrD/AcrF family aq_698 PF13533 Biotin-lipoyl like aq_701 PF02677 Epoxyqueuosine reductase QueH aq_702 PF13411 MerR HTH family regulatory protein aq_703 PF00226 DnaJ domain aq_703 PF00684 DnaJ central domain aq_703 PF01556 DnaJ C terminal domain aq_705 PF09157 Pseudouridine synthase II TruB, C-terminal aq_705 PF01509 TruB family pseudouridylate synthase (N terminal domain) aq_705 PF16198 tRNA pseudouridylate synthase B C-terminal domain aq_706 PF00291 Pyridoxal-phosphate dependent enzyme aq_708 PF05378 Hydantoinase/oxoprolinase N-terminal region aq_708 PF01968 Hydantoinase/oxoprolinase aq_712 PF01765 Ribosome recycling factor aq_713 PF00696 Amino acid kinase family aq_715 PF00889 Elongation factor TS aq_717 PF11897 Protein of unknown function (DUF3417) aq_717 PF00343 Carbohydrate phosphorylase aq_718 PF00483 Nucleotidyl transferase aq_721 PF08323 Starch synthase catalytic domain aq_721 PF00534 Glycosyl transferases group 1 aq_722 PF02806 Alpha amylase, C-terminal all-beta domain aq_722 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) aq_722 PF00128 Alpha amylase, catalytic domain aq_723 PF02446 4-alpha-glucanotransferase aq_724 PF00689 Cation transporting ATPase, C-terminus aq_724 PF00690 Cation transporter/ATPase, N-terminus aq_727 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain aq_727 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain aq_728 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain aq_728 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain aq_731 PF02683 Cytochrome C biogenesis protein transmembrane region aq_732 PF00117 Glutamine amidotransferase class-I aq_734 PF00177 Ribosomal protein S7p/S5e aq_735 PF00164 Ribosomal protein S12/S23 aq_736 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain aq_736 PF07992 Pyridine nucleotide-disulphide oxidoreductase aq_737 PF10609 NUBPL iron-transfer P-loop NTPase aq_739 PF00266 Aminotransferase class-V aq_740 PF01594 AI-2E family transporter aq_742 PF02844 Phosphoribosylglycinamide synthetase, N domain aq_742 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain aq_742 PF02843 Phosphoribosylglycinamide synthetase, C domain aq_745 PF00437 Type II/IV secretion system protein aq_747 PF00482 Type II secretion system (T2SS), protein F aq_748 PF00348 Polyprenyl synthetase aq_749 PF01416 tRNA pseudouridine synthase aq_750 PF01380 SIS domain aq_750 PF10432 Bacterial phospho-glucose isomerase C-terminal SIS domain aq_754 PF01920 Prefoldin subunit aq_756 PF03673 Uncharacterised protein family (UPF0128) aq_759 PF02996 Prefoldin subunit aq_761 PF01134 Glucose inhibited division protein A aq_761 PF13932 GidA associated domain aq_763 PF00152 tRNA synthetases class II (D, K and N) aq_765 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase aq_768 PF02834 LigT like Phosphoesterase aq_769 PF02769 AIR synthase related protein, C-terminal domain aq_769 PF00586 AIR synthase related protein, N-terminal domain aq_771 PF03755 YicC-like family, N-terminal region aq_771 PF08340 Domain of unknown function (DUF1732) aq_773 PF01728 FtsJ-like methyltransferase aq_773 PF01479 S4 domain aq_775 PF02618 YceG-like family aq_777 PF02910 Fumarate reductase flavoprotein C-term aq_777 PF00890 FAD binding domain aq_778 PF01933 Uncharacterised protein family UPF0052 aq_782 PF00815 Histidinol dehydrogenase aq_786 PF00873 AcrB/AcrD/AcrF family aq_789 PF04055 Radical SAM superfamily aq_792a PF01632 Ribosomal protein L35 aq_793 PF13361 UvrD-like helicase C-terminal domain aq_793 PF00580 UvrD/REP helicase N-terminal domain aq_797 PF13180 PDZ domain aq_797 PF03572 Peptidase family S41 aq_801 PF00814 Glycoprotease family aq_804 PF00374 Nickel-dependent hydrogenase aq_806 PF01979 Amidohydrolase family aq_812 PF00924 Mechanosensitive ion channel aq_813 PF01648 4'-phosphopantetheinyl transferase superfamily aq_815 PF02441 Flavoprotein aq_815 PF04127 DNA / pantothenate metabolism flavoprotein aq_816 PF00202 Aminotransferase class-III aq_819 PF00795 Carbon-nitrogen hydrolase aq_821 PF08245 Mur ligase middle domain aq_821 PF02875 Mur ligase family, glutamate ligase domain aq_821 PF01225 Mur ligase family, catalytic domain aq_831 PF06508 Queuosine biosynthesis protein QueC aq_832 PF01975 Survival protein SurE aq_833 PF13144 Chaperone for flagella basal body P-ring formation aq_834 PF06429 Flagellar basal body rod FlgEFG protein C-terminal aq_834 PF00460 Flagella basal body rod protein aq_835 PF07992 Pyridine nucleotide-disulphide oxidoreductase aq_835 PF18113 Rubredoxin binding C-terminal domain aq_837 PF00920 Dehydratase family aq_841 PF02005 N2,N2-dimethylguanosine tRNA methyltransferase aq_843 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE aq_844 PF02824 TGS domain aq_844 PF13291 ACT domain aq_844 PF04607 Region found in RelA / SpoT proteins aq_849 PF04055 Radical SAM superfamily aq_849 PF00919 Uncharacterized protein family UPF0004 aq_849 PF18693 TRAM domain aq_851 PF01544 CorA-like Mg2+ transporter protein aq_852 PF04166 Pyridoxal phosphate biosynthetic protein PdxA aq_855 PF00582 Universal stress protein family aq_857 PF00551 Formyl transferase aq_858 PF00578 AhpC/TSA family aq_858 PF10417 C-terminal domain of 1-Cys peroxiredoxin aq_863 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) aq_866 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus aq_866 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus aq_866 PF00361 Proton-conducting membrane transporter aq_867a PF01165 Ribosomal protein S21 aq_869 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain aq_869 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain aq_871 PF10396 GTP-binding protein TrmE N-terminus aq_871 PF12631 MnmE helical domain aq_871 PF01926 50S ribosome-binding GTPase aq_873 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain aq_873 PF07498 Rho termination factor, N-terminal domain aq_873 PF07497 Rho termination factor, RNA-binding domain aq_876 PF00472 RF-1 domain aq_876 PF03462 PCRF domain aq_877 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain aq_878 PF03775 Septum formation inhibitor MinC, C-terminal domain aq_881 PF13292 1-deoxy-D-xylulose-5-phosphate synthase aq_881 PF02780 Transketolase, C-terminal domain aq_881 PF02779 Transketolase, pyrimidine binding domain aq_886 PF17915 Reverse gyrase zinc finger aq_886 PF01751 Toprim domain aq_886 PF00270 DEAD/DEAH box helicase aq_886 PF01131 DNA topoisomerase aq_890 PF01875 Memo-like protein aq_892 PF00698 Acyl transferase domain aq_894 PF02547 Queuosine biosynthesis protein aq_895 PF00348 Polyprenyl synthetase aq_896 PF01592 NifU-like N terminal domain aq_901 PF01488 Shikimate / quinate 5-dehydrogenase aq_901 PF18317 Shikimate 5'-dehydrogenase C-terminal domain aq_901 PF08501 Shikimate dehydrogenase substrate binding domain aq_903 PF14437 MafB19-like deaminase aq_905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase aq_905 PF00672 HAMP domain aq_905 PF00989 PAS fold aq_905 PF00512 His Kinase A (phospho-acceptor) domain aq_906 PF01895 PhoU domain aq_908 PF13580 SIS domain aq_909 PF01513 ATP-NAD kinase aq_910 PF01695 IstB-like ATP binding protein aq_911 PF01145 SPFH domain / Band 7 family aq_915 PF00288 GHMP kinases N terminal domain aq_916 PF05173 Dihydrodipicolinate reductase, C-terminus aq_916 PF01113 Dihydrodipicolinate reductase, N-terminus aq_919a PF00111 2Fe-2S iron-sulfur cluster binding domain aq_920 PF02881 SRP54-type protein, helical bundle domain aq_920 PF00448 SRP54-type protein, GTPase domain aq_923 PF00750 tRNA synthetases class I (R) aq_923 PF03485 Arginyl tRNA synthetase N terminal domain aq_923 PF05746 DALR anticodon binding domain aq_924 PF03725 3' exoribonuclease family, domain 2 aq_924 PF01138 3' exoribonuclease family, domain 1 aq_928 PF01613 Flavin reductase like domain aq_929 PF00999 Sodium/hydrogen exchanger family aq_931 PF14489 QueF-like protein aq_932 PF00929 Exonuclease aq_936 PF01434 Peptidase family M41 aq_936 PF17862 AAA+ lid domain aq_936 PF06480 FtsH Extracellular aq_936 PF00004 ATPase family associated with various cellular activities (AAA) aq_940 PF00330 Aconitase family (aconitate hydratase) aq_944 PF01597 Glycine cleavage H-protein aq_945 PF02091 Glycyl-tRNA synthetase alpha subunit aq_946 PF00035 Double-stranded RNA binding motif aq_946 PF14622 Ribonuclease-III-like aq_948 PF00762 Ferrochelatase aq_951 PF01842 ACT domain aq_951 PF01817 Chorismate mutase type II aq_951 PF00800 Prephenate dehydratase aq_952 PF00453 Ribosomal protein L20 aq_953 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain aq_953 PF01409 tRNA synthetases class II core domain (F) aq_955 PF10502 Signal peptidase, peptidase S26 aq_957 PF02542 YgbB family aq_958 PF01066 CDP-alcohol phosphatidyltransferase aq_959 PF00795 Carbon-nitrogen hydrolase aq_959 PF02540 NAD synthase aq_960 PF00374 Nickel-dependent hydrogenase aq_965 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal aq_965 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit aq_967 PF04453 LPS transport system D aq_967 PF03968 OstA-like protein aq_968 PF00834 Ribulose-phosphate 3 epimerase family aq_969 PF02223 Thymidylate kinase aq_970 PF01960 ArgJ family aq_972 PF01435 Peptidase family M48 aq_973 PF07549 SecD/SecF GG Motif aq_973 PF02355 Protein export membrane protein aq_975 PF04055 Radical SAM superfamily aq_975 PF06968 Biotin and Thiamin Synthesis associated domain aq_979 PF00174 Oxidoreductase molybdopterin binding domain aq_980 PF00521 DNA gyrase/topoisomerase IV, subunit A aq_980 PF03989 DNA gyrase C-terminal domain, beta-propeller aq_983 PF01156 Inosine-uridine preferring nucleoside hydrolase aq_987 PF01661 Macro domain aq_988 PF02630 SCO1/SenC aq_992 PF00579 tRNA synthetases class I (W and Y) aq_996 PF00012 Hsp70 protein aq_999 PF13193 AMP-binding enzyme C-terminal domain aq_999 PF00501 AMP-binding enzyme aq_aa03 PF01850 PIN domain aq_aa05 PF07282 Putative transposase DNA-binding domain aq_aa09 PF00589 Phage integrase family aq_aa15 PF05569 BlaR1 peptidase M56 aq_aa18 PF00082 Subtilase family aq_aa25 PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system aq_aa31 PF01935 Helicase HerA, central domain aq_aa31 PF09378 HAS barrel domain aq_aa35 PF13614 AAA domain aq_aa38 PF02661 Fic/DOC family aq_aa38 PF12728 Helix-turn-helix domain aq_aa40 PF01609 Transposase DDE domain aq_t20 PF05697 Bacterial trigger factor protein (TF) aq_t20 PF05698 Bacterial trigger factor protein (TF) C-terminus aq_t21 PF05698 Bacterial trigger factor protein (TF) C-terminus aq_t21 PF05697 Bacterial trigger factor protein (TF)