locus-tag class description DKK66_00005 PF01027 Inhibitor of apoptosis-promoting Bax1 DKK66_00010 PF01171 PP-loop family DKK66_00010 PF09179 TilS substrate binding domain DKK66_00010 PF11734 TilS substrate C-terminal domain DKK66_00015 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DKK66_00040 PF02600 Disulfide bond formation protein DsbB DKK66_00050 PF01523 Putative modulator of DNA gyrase DKK66_00055 PF04751 Protein of unknown function (DUF615) DKK66_00060 PF00994 Probable molybdopterin binding domain DKK66_00065 PF00561 alpha/beta hydrolase fold DKK66_00070 PF00218 Indole-3-glycerol phosphate synthase DKK66_00075 PF01734 Patatin-like phospholipase DKK66_00085 PF00108 Thiolase, N-terminal domain DKK66_00085 PF02803 Thiolase, C-terminal domain DKK66_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DKK66_00090 PF00378 Enoyl-CoA hydratase/isomerase DKK66_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DKK66_00095 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DKK66_00105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKK66_00105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKK66_00105 PF02770 Acyl-CoA dehydrogenase, middle domain DKK66_00105 PF09317 Domain of unknown function (DUF1974) DKK66_00115 PF01053 Cys/Met metabolism PLP-dependent enzyme DKK66_00120 PF00156 Phosphoribosyl transferase domain DKK66_00125 PF02674 Colicin V production protein DKK66_00130 PF05036 Sporulation related domain DKK66_00135 PF08245 Mur ligase middle domain DKK66_00135 PF02875 Mur ligase family, glutamate ligase domain DKK66_00155 PF00877 NlpC/P60 family DKK66_00165 PF00155 Aminotransferase class I and II DKK66_00190 PF07724 AAA domain (Cdc48 subfamily) DKK66_00190 PF10431 C-terminal, D2-small domain, of ClpB protein DKK66_00190 PF00004 ATPase family associated with various cellular activities (AAA) DKK66_00190 PF02861 Clp amino terminal domain, pathogenicity island component DKK66_00190 PF17871 AAA lid domain DKK66_00195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_00195 PF17200 Single Cache domain 2 DKK66_00195 PF00672 HAMP domain DKK66_00200 PF00586 AIR synthase related protein, N-terminal domain DKK66_00200 PF02769 AIR synthase related protein, C-terminal domain DKK66_00205 PF00581 Rhodanese-like domain DKK66_00210 PF01266 FAD dependent oxidoreductase DKK66_00210 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DKK66_00220 PF01925 Sulfite exporter TauE/SafE DKK66_00235 PF03814 Potassium-transporting ATPase A subunit DKK66_00245 PF02669 K+-transporting ATPase, c chain DKK66_00250 PF02702 Osmosensitive K+ channel His kinase sensor domain DKK66_00250 PF00512 His Kinase A (phospho-acceptor) domain DKK66_00250 PF13493 Domain of unknown function (DUF4118) DKK66_00250 PF13492 GAF domain DKK66_00250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_00255 PF00486 Transcriptional regulatory protein, C terminal DKK66_00255 PF00072 Response regulator receiver domain DKK66_00260 PF00795 Carbon-nitrogen hydrolase DKK66_00265 PF01820 D-ala D-ala ligase N-terminus DKK66_00265 PF07478 D-ala D-ala ligase C-terminus DKK66_00280 PF04231 Endonuclease I DKK66_00285 PF00356 Bacterial regulatory proteins, lacI family DKK66_00285 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DKK66_00290 PF01202 Shikimate kinase DKK66_00295 PF07690 Major Facilitator Superfamily DKK66_00305 PF00108 Thiolase, N-terminal domain DKK66_00305 PF02803 Thiolase, C-terminal domain DKK66_00320 PF08220 DeoR-like helix-turn-helix domain DKK66_00320 PF00455 DeoR C terminal sensor domain DKK66_00325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_00325 PF03466 LysR substrate binding domain DKK66_00335 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP DKK66_00345 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKK66_00350 PF01730 UreF DKK66_00355 PF05194 UreE urease accessory protein, C-terminal domain DKK66_00355 PF02814 UreE urease accessory protein, N-terminal domain DKK66_00360 PF00449 Urease alpha-subunit, N-terminal domain DKK66_00360 PF01979 Amidohydrolase family DKK66_00365 PF00699 Urease beta subunit DKK66_00370 PF00547 Urease, gamma subunit DKK66_00375 PF01774 UreD urease accessory protein DKK66_00380 PF00005 ABC transporter DKK66_00385 PF00005 ABC transporter DKK66_00385 PF12399 Branched-chain amino acid ATP-binding cassette transporter DKK66_00395 PF02653 Branched-chain amino acid transport system / permease component DKK66_00415 PF13411 MerR HTH family regulatory protein DKK66_00420 PF02627 Carboxymuconolactone decarboxylase family DKK66_00425 PF00072 Response regulator receiver domain DKK66_00430 PF18415 Histidine kinase receptor ArcB trans-membrane domain DKK66_00430 PF00512 His Kinase A (phospho-acceptor) domain DKK66_00430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_00430 PF01627 Hpt domain DKK66_00430 PF00989 PAS fold DKK66_00430 PF00072 Response regulator receiver domain DKK66_00440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_00440 PF03466 LysR substrate binding domain DKK66_00445 PF07690 Major Facilitator Superfamily DKK66_00450 PF02611 CDP-diacylglycerol pyrophosphatase DKK66_00465 PF05199 GMC oxidoreductase DKK66_00465 PF00732 GMC oxidoreductase DKK66_00470 PF13378 Enolase C-terminal domain-like DKK66_00470 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DKK66_00475 PF07690 Major Facilitator Superfamily DKK66_00480 PF00171 Aldehyde dehydrogenase family DKK66_00485 PF00654 Voltage gated chloride channel DKK66_00490 PF03741 Integral membrane protein TerC family DKK66_00495 PF01435 Peptidase family M48 DKK66_00500 PF03466 LysR substrate binding domain DKK66_00500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_00510 PF00563 EAL domain DKK66_00510 PF00990 Diguanylate cyclase, GGDEF domain DKK66_00510 PF03707 Bacterial signalling protein N terminal repeat DKK66_00515 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DKK66_00515 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DKK66_00530 PF10411 Disulfide bond isomerase protein N-terminus DKK66_00530 PF13098 Thioredoxin-like domain DKK66_00535 PF01494 FAD binding domain DKK66_00540 PF01494 FAD binding domain DKK66_00545 PF00557 Metallopeptidase family M24 DKK66_00545 PF05195 Aminopeptidase P, N-terminal domain DKK66_00550 PF01709 Transcriptional regulator DKK66_00555 PF01311 Bacterial export proteins, family 1 DKK66_00560 PF01313 Bacterial export proteins, family 3 DKK66_00570 PF00813 FliP family DKK66_00575 PF04347 Flagellar biosynthesis protein, FliO DKK66_00580 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DKK66_00580 PF16973 Flagellar motor switch protein FliN N-terminal DKK66_00585 PF02154 Flagellar motor switch protein FliM DKK66_00585 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DKK66_00590 PF03748 Flagellar basal body-associated protein FliL DKK66_00605 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_00610 PF08402 TOBE domain DKK66_00610 PF00005 ABC transporter DKK66_00620 PF18269 T3SS EscN ATPase C-terminal domain DKK66_00620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DKK66_00630 PF01706 FliG C-terminal domain DKK66_00630 PF14841 FliG middle domain DKK66_00630 PF14842 FliG N-terminal domain DKK66_00635 PF01514 Secretory protein of YscJ/FliF family DKK66_00635 PF08345 Flagellar M-ring protein C-terminal DKK66_00640 PF02049 Flagellar hook-basal body complex protein FliE DKK66_00645 PF00158 Sigma-54 interaction domain DKK66_00645 PF00072 Response regulator receiver domain DKK66_00645 PF02954 Bacterial regulatory protein, Fis family DKK66_00650 PF00072 Response regulator receiver domain DKK66_00650 PF01339 CheB methylesterase DKK66_00655 PF01451 Low molecular weight phosphotyrosine protein phosphatase DKK66_00660 PF05971 RNA methyltransferase DKK66_00670 PF00563 EAL domain DKK66_00670 PF00990 Diguanylate cyclase, GGDEF domain DKK66_00670 PF03707 Bacterial signalling protein N terminal repeat DKK66_00675 PF00672 HAMP domain DKK66_00675 PF02743 Cache domain DKK66_00675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_00680 PF03692 Putative zinc- or iron-chelating domain DKK66_00690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_00690 PF03466 LysR substrate binding domain DKK66_00695 PF13593 SBF-like CPA transporter family (DUF4137) DKK66_00700 PF17757 UvrB interaction domain DKK66_00700 PF00271 Helicase conserved C-terminal domain DKK66_00700 PF04851 Type III restriction enzyme, res subunit DKK66_00700 PF02151 UvrB/uvrC motif DKK66_00700 PF12344 Ultra-violet resistance protein B DKK66_00705 PF00768 D-alanyl-D-alanine carboxypeptidase DKK66_00730 PF00892 EamA-like transporter family DKK66_00745 PF00155 Aminotransferase class I and II DKK66_00745 PF00392 Bacterial regulatory proteins, gntR family DKK66_00750 PF12833 Helix-turn-helix domain DKK66_00750 PF14525 AraC-binding-like domain DKK66_00755 PF13520 Amino acid permease DKK66_00760 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DKK66_00765 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DKK66_00770 PF00563 EAL domain DKK66_00770 PF03707 Bacterial signalling protein N terminal repeat DKK66_00770 PF00990 Diguanylate cyclase, GGDEF domain DKK66_00780 PF00072 Response regulator receiver domain DKK66_00780 PF01584 CheW-like domain DKK66_00785 PF00072 Response regulator receiver domain DKK66_00785 PF01584 CheW-like domain DKK66_00790 PF00072 Response regulator receiver domain DKK66_00795 PF04344 Chemotaxis phosphatase, CheZ DKK66_00800 PF13458 Periplasmic binding protein DKK66_00805 PF01266 FAD dependent oxidoreductase DKK66_00810 PF00171 Aldehyde dehydrogenase family DKK66_00815 PF00701 Dihydrodipicolinate synthetase family DKK66_00820 PF05544 Proline racemase DKK66_00825 PF12833 Helix-turn-helix domain DKK66_00825 PF06445 GyrI-like small molecule binding domain DKK66_00830 PF00403 Heavy-metal-associated domain DKK66_00835 PF00175 Oxidoreductase NAD-binding domain DKK66_00835 PF00111 2Fe-2S iron-sulfur cluster binding domain DKK66_00835 PF00970 Oxidoreductase FAD-binding domain DKK66_00855 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DKK66_00860 PF00919 Uncharacterized protein family UPF0004 DKK66_00860 PF01938 TRAM domain DKK66_00860 PF04055 Radical SAM superfamily DKK66_00870 PF02472 Biopolymer transport protein ExbD/TolR DKK66_00875 PF01618 MotA/TolQ/ExbB proton channel family DKK66_00910 PF00005 ABC transporter DKK66_00910 PF08402 TOBE domain DKK66_00915 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_00920 PF00266 Aminotransferase class-V DKK66_00930 PF01266 FAD dependent oxidoreductase DKK66_00935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_00935 PF03466 LysR substrate binding domain DKK66_00940 PF00180 Isocitrate/isopropylmalate dehydrogenase DKK66_00945 PF01925 Sulfite exporter TauE/SafE DKK66_00950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_00950 PF08447 PAS fold DKK66_00950 PF13426 PAS domain DKK66_00965 PF00581 Rhodanese-like domain DKK66_00985 PF02321 Outer membrane efflux protein DKK66_00995 PF00873 AcrB/AcrD/AcrF family DKK66_01005 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKK66_01020 PF00873 AcrB/AcrD/AcrF family DKK66_01025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKK66_01030 PF02321 Outer membrane efflux protein DKK66_01040 PF05088 Bacterial NAD-glutamate dehydrogenase DKK66_01045 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKK66_01050 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKK66_01055 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_01060 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_01065 PF00005 ABC transporter DKK66_01070 PF12833 Helix-turn-helix domain DKK66_01075 PF00512 His Kinase A (phospho-acceptor) domain DKK66_01075 PF00989 PAS fold DKK66_01075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_01105 PF00890 FAD binding domain DKK66_01105 PF02910 Fumarate reductase flavoprotein C-term DKK66_01110 PF00512 His Kinase A (phospho-acceptor) domain DKK66_01110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_01110 PF00989 PAS fold DKK66_01115 PF03480 Bacterial extracellular solute-binding protein, family 7 DKK66_01120 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DKK66_01125 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DKK66_01130 PF00390 Malic enzyme, N-terminal domain DKK66_01130 PF03949 Malic enzyme, NAD binding domain DKK66_01130 PF01515 Phosphate acetyl/butaryl transferase DKK66_01140 PF04393 Protein of unknown function (DUF535) DKK66_01145 PF01613 Flavin reductase like domain DKK66_01150 PF01336 OB-fold nucleic acid binding domain DKK66_01150 PF02811 PHP domain DKK66_01150 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DKK66_01150 PF14579 Helix-hairpin-helix motif DKK66_01150 PF07733 Bacterial DNA polymerase III alpha NTPase domain DKK66_01155 PF06472 ABC transporter transmembrane region 2 DKK66_01155 PF00005 ABC transporter DKK66_01160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_01160 PF17200 Single Cache domain 2 DKK66_01160 PF00672 HAMP domain DKK66_01165 PF00294 pfkB family carbohydrate kinase DKK66_01170 PF04227 Indigoidine synthase A like protein DKK66_01175 PF01966 HD domain DKK66_01185 PF03180 NLPA lipoprotein DKK66_01190 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_01195 PF00005 ABC transporter DKK66_01195 PF09383 NIL domain DKK66_01205 PF02583 Metal-sensitive transcriptional repressor DKK66_01210 PF03824 High-affinity nickel-transport protein DKK66_01215 PF01569 PAP2 superfamily DKK66_01220 PF02417 Chromate transporter DKK66_01230 PF00072 Response regulator receiver domain DKK66_01230 PF00196 Bacterial regulatory proteins, luxR family DKK66_01235 PF12795 Mechanosensitive ion channel porin domain DKK66_01235 PF12794 Mechanosensitive ion channel inner membrane domain 1 DKK66_01235 PF00924 Mechanosensitive ion channel DKK66_01240 PF00005 ABC transporter DKK66_01245 PF12704 MacB-like periplasmic core domain DKK66_01245 PF02687 FtsX-like permease family DKK66_01255 PF00877 NlpC/P60 family DKK66_01260 PF03109 ABC1 family DKK66_01280 PF08281 Sigma-70, region 4 DKK66_01280 PF04542 Sigma-70 region 2 DKK66_01285 PF18073 Rubredoxin metal binding domain DKK66_01295 PF00106 short chain dehydrogenase DKK66_01300 PF01593 Flavin containing amine oxidoreductase DKK66_01345 PF00925 GTP cyclohydrolase II DKK66_01360 PF13416 Bacterial extracellular solute-binding protein DKK66_01365 PF01430 Hsp33 protein DKK66_01370 PF00227 Proteasome subunit DKK66_01375 PF01476 LysM domain DKK66_01375 PF03734 L,D-transpeptidase catalytic domain DKK66_01380 PF05958 tRNA (Uracil-5-)-methyltransferase DKK66_01425 PF03981 Ubiquinol-cytochrome C chaperone DKK66_01425 PF13099 Domain of unknown function (DUF3944) DKK66_01460 PF05958 tRNA (Uracil-5-)-methyltransferase DKK66_01485 PF02321 Outer membrane efflux protein DKK66_01490 PF00529 HlyD membrane-fusion protein of T1SS DKK66_01495 PF00005 ABC transporter DKK66_01495 PF00664 ABC transporter transmembrane region DKK66_01505 PF00171 Aldehyde dehydrogenase family DKK66_01510 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_01515 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_01520 PF08402 TOBE domain DKK66_01520 PF00005 ABC transporter DKK66_01525 PF13416 Bacterial extracellular solute-binding protein DKK66_01530 PF03466 LysR substrate binding domain DKK66_01530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_01540 PF00575 S1 RNA binding domain DKK66_01540 PF10150 Ribonuclease E/G family DKK66_01540 PF12111 Polyribonucleotide phosphorylase C terminal DKK66_01545 PF00849 RNA pseudouridylate synthase DKK66_01545 PF01479 S4 domain DKK66_01550 PF13419 Haloacid dehalogenase-like hydrolase DKK66_01560 PF01343 Peptidase family S49 DKK66_01560 PF06965 Na+/H+ antiporter 1 DKK66_01565 PF13677 Membrane MotB of proton-channel complex MotA/MotB DKK66_01565 PF00691 OmpA family DKK66_01570 PF00881 Nitroreductase family DKK66_01575 PF01180 Dihydroorotate dehydrogenase DKK66_01585 PF04377 Arginine-tRNA-protein transferase, C terminus DKK66_01585 PF04376 Arginine-tRNA-protein transferase, N terminus DKK66_01590 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DKK66_01595 PF01475 Ferric uptake regulator family DKK66_01600 PF04355 SmpA / OmlA family DKK66_01605 PF05173 Dihydrodipicolinate reductase, C-terminus DKK66_01605 PF01113 Dihydrodipicolinate reductase, N-terminus DKK66_01610 PF01032 FecCD transport family DKK66_01615 PF00005 ABC transporter DKK66_01620 PF04293 SpoVR like protein DKK66_01625 PF04285 Protein of unknown function (DUF444) DKK66_01630 PF06798 PrkA serine protein kinase C-terminal domain DKK66_01630 PF08298 PrkA AAA domain DKK66_01650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKK66_01650 PF12806 Acetyl-CoA dehydrogenase C-terminal like DKK66_01650 PF02770 Acyl-CoA dehydrogenase, middle domain DKK66_01650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKK66_01655 PF00171 Aldehyde dehydrogenase family DKK66_01660 PF03328 HpcH/HpaI aldolase/citrate lyase family DKK66_01670 PF06379 L-rhamnose-proton symport protein (RhaT) DKK66_01675 PF04909 Amidohydrolase DKK66_01680 PF05336 L-rhamnose mutarotase DKK66_01685 PF13378 Enolase C-terminal domain-like DKK66_01685 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DKK66_01690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_01690 PF03466 LysR substrate binding domain DKK66_01695 PF02810 SEC-C motif DKK66_01695 PF03695 Uncharacterised protein family (UPF0149) DKK66_01700 PF13193 AMP-binding enzyme C-terminal domain DKK66_01700 PF00501 AMP-binding enzyme DKK66_01705 PF00376 MerR family regulatory protein DKK66_01705 PF09278 MerR, DNA binding DKK66_01710 PF02770 Acyl-CoA dehydrogenase, middle domain DKK66_01710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKK66_01710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKK66_01715 PF01039 Carboxyl transferase domain DKK66_01725 PF00364 Biotin-requiring enzyme DKK66_01725 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKK66_01725 PF00289 Biotin carboxylase, N-terminal domain DKK66_01725 PF02785 Biotin carboxylase C-terminal domain DKK66_01730 PF00682 HMGL-like DKK66_01740 PF13193 AMP-binding enzyme C-terminal domain DKK66_01740 PF00501 AMP-binding enzyme DKK66_01755 PF01197 Ribosomal protein L31 DKK66_01760 PF09190 DALR domain DKK66_01760 PF01406 tRNA synthetases class I (C) catalytic domain DKK66_01765 PF00365 Phosphofructokinase DKK66_01770 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DKK66_01770 PF00749 tRNA synthetases class I (E and Q), catalytic domain DKK66_01780 PF08497 Radical SAM N-terminal DKK66_01780 PF11842 Domain of unknown function (DUF3362) DKK66_01780 PF04055 Radical SAM superfamily DKK66_01790 PF01740 STAS domain DKK66_01790 PF00916 Sulfate permease family DKK66_01795 PF03976 Polyphosphate kinase 2 (PPK2) DKK66_01800 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DKK66_01805 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DKK66_01810 PF00149 Calcineurin-like phosphoesterase DKK66_01815 PF00672 HAMP domain DKK66_01815 PF02743 Cache domain DKK66_01815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_01820 PF02652 L-lactate permease DKK66_01825 PF01232 Mannitol dehydrogenase Rossmann domain DKK66_01825 PF08125 Mannitol dehydrogenase C-terminal domain DKK66_01830 PF00083 Sugar (and other) transporter DKK66_01830 PF07690 Major Facilitator Superfamily DKK66_01835 PF00107 Zinc-binding dehydrogenase DKK66_01835 PF08240 Alcohol dehydrogenase GroES-like domain DKK66_01840 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DKK66_01850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_01850 PF03466 LysR substrate binding domain DKK66_01855 PF04341 Protein of unknown function, DUF485 DKK66_01860 PF00474 Sodium:solute symporter family DKK66_01865 PF16177 Acetyl-coenzyme A synthetase N-terminus DKK66_01865 PF00501 AMP-binding enzyme DKK66_01865 PF13193 AMP-binding enzyme C-terminal domain DKK66_01870 PF01062 Bestrophin, RFP-TM, chloride channel DKK66_01890 PF04060 Putative Fe-S cluster DKK66_01895 PF13375 RnfC Barrel sandwich hybrid domain DKK66_01895 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DKK66_01895 PF10531 SLBB domain DKK66_01895 PF12838 4Fe-4S dicluster domain DKK66_01900 PF03116 NQR2, RnfD, RnfE family DKK66_01905 PF10576 Iron-sulfur binding domain of endonuclease III DKK66_01905 PF00730 HhH-GPD superfamily base excision DNA repair protein DKK66_01905 PF00633 Helix-hairpin-helix motif DKK66_01910 PF13180 PDZ domain DKK66_01915 PF03737 Aldolase/RraA DKK66_01925 PF02261 Aspartate decarboxylase DKK66_01930 PF02569 Pantoate-beta-alanine ligase DKK66_01935 PF02548 Ketopantoate hydroxymethyltransferase DKK66_01945 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DKK66_01950 PF12627 Probable RNA and SrmB- binding site of polymerase A DKK66_01950 PF01743 Poly A polymerase head domain DKK66_01950 PF12626 Polymerase A arginine-rich C-terminus DKK66_01965 PF01554 MatE DKK66_01970 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DKK66_01970 PF01565 FAD binding domain DKK66_01990 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DKK66_01990 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DKK66_01995 PF00072 Response regulator receiver domain DKK66_01995 PF00990 Diguanylate cyclase, GGDEF domain DKK66_02000 PF00293 NUDIX domain DKK66_02005 PF03458 UPF0126 domain DKK66_02010 PF07498 Rho termination factor, N-terminal domain DKK66_02010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DKK66_02010 PF07497 Rho termination factor, RNA-binding domain DKK66_02015 PF00085 Thioredoxin DKK66_02020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DKK66_02020 PF00005 ABC transporter DKK66_02025 PF12911 N-terminal TM domain of oligopeptide transport permease C DKK66_02025 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_02030 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_02035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DKK66_02045 PF17409 MoaF C-terminal domain DKK66_02045 PF10703 MoaF N-terminal domain DKK66_02060 PF01047 MarR family DKK66_02070 PF00324 Amino acid permease DKK66_02075 PF00196 Bacterial regulatory proteins, luxR family DKK66_02080 PF00202 Aminotransferase class-III DKK66_02085 PF00171 Aldehyde dehydrogenase family DKK66_02090 PF12833 Helix-turn-helix domain DKK66_02100 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKK66_02105 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKK66_02110 PF00171 Aldehyde dehydrogenase family DKK66_02115 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DKK66_02120 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase DKK66_02125 PF07690 Major Facilitator Superfamily DKK66_02130 PF00171 Aldehyde dehydrogenase family DKK66_02135 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKK66_02140 PF03328 HpcH/HpaI aldolase/citrate lyase family DKK66_02145 PF07690 Major Facilitator Superfamily DKK66_02150 PF00267 Gram-negative porin DKK66_02155 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DKK66_02160 PF01613 Flavin reductase like domain DKK66_02180 PF00149 Calcineurin-like phosphoesterase DKK66_02190 PF00171 Aldehyde dehydrogenase family DKK66_02190 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DKK66_02190 PF01619 Proline dehydrogenase DKK66_02190 PF14850 DNA-binding domain of Proline dehydrogenase DKK66_02195 PF02635 DsrE/DsrF-like family DKK66_02205 PF00158 Sigma-54 interaction domain DKK66_02205 PF00072 Response regulator receiver domain DKK66_02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_02215 PF00512 His Kinase A (phospho-acceptor) domain DKK66_02245 PF00773 RNB domain DKK66_02245 PF17876 Cold shock domain DKK66_02245 PF08206 Ribonuclease B OB domain DKK66_02245 PF08461 Ribonuclease R winged-helix domain DKK66_02245 PF00575 S1 RNA binding domain DKK66_02265 PF07690 Major Facilitator Superfamily DKK66_02270 PF04185 Phosphoesterase family DKK66_02275 PF03150 Di-haem cytochrome c peroxidase DKK66_02275 PF00034 Cytochrome c DKK66_02285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DKK66_02285 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DKK66_02290 PF00709 Adenylosuccinate synthetase DKK66_02295 PF13393 Histidyl-tRNA synthetase DKK66_02300 PF01145 SPFH domain / Band 7 family DKK66_02305 PF01145 SPFH domain / Band 7 family DKK66_02305 PF12221 Bacterial membrane protein N terminal DKK66_02310 PF13167 GTP-binding GTPase N-terminal DKK66_02310 PF16360 GTP-binding GTPase Middle Region DKK66_02310 PF01926 50S ribosome-binding GTPase DKK66_02315 PF17209 Hfq protein DKK66_02320 PF01926 50S ribosome-binding GTPase DKK66_02320 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DKK66_02325 PF13360 PQQ-like domain DKK66_02335 PF03129 Anticodon binding domain DKK66_02335 PF13393 Histidyl-tRNA synthetase DKK66_02340 PF04551 GcpE protein DKK66_02345 PF13464 Domain of unknown function (DUF4115) DKK66_02355 PF04055 Radical SAM superfamily DKK66_02360 PF00334 Nucleoside diphosphate kinase DKK66_02370 PF00171 Aldehyde dehydrogenase family DKK66_02375 PF04962 KduI/IolB family DKK66_02380 PF01261 Xylose isomerase-like TIM barrel DKK66_02385 PF00294 pfkB family carbohydrate kinase DKK66_02390 PF01418 Helix-turn-helix domain, rpiR family DKK66_02390 PF01380 SIS domain DKK66_02400 PF02653 Branched-chain amino acid transport system / permease component DKK66_02405 PF00005 ABC transporter DKK66_02410 PF13407 Periplasmic binding protein domain DKK66_02415 PF01261 Xylose isomerase-like TIM barrel DKK66_02420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DKK66_02420 PF00205 Thiamine pyrophosphate enzyme, central domain DKK66_02420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DKK66_02425 PF00356 Bacterial regulatory proteins, lacI family DKK66_02430 PF01261 Xylose isomerase-like TIM barrel DKK66_02440 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DKK66_02440 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DKK66_02455 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DKK66_02455 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DKK66_02460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DKK66_02460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DKK66_02465 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DKK66_02465 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DKK66_02470 PF00440 Bacterial regulatory proteins, tetR family DKK66_02475 PF02321 Outer membrane efflux protein DKK66_02480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKK66_02485 PF00873 AcrB/AcrD/AcrF family DKK66_02510 PF04381 Putative exonuclease, RdgC DKK66_02515 PF00141 Peroxidase DKK66_02520 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DKK66_02525 PF01180 Dihydroorotate dehydrogenase DKK66_02530 PF07664 Ferrous iron transport protein B C terminus DKK66_02530 PF02421 Ferrous iron transport protein B DKK66_02530 PF07670 Nucleoside recognition DKK66_02540 PF00692 dUTPase DKK66_02560 PF00291 Pyridoxal-phosphate dependent enzyme DKK66_02565 PF00027 Cyclic nucleotide-binding domain DKK66_02565 PF00520 Ion transport protein DKK66_02570 PF02595 Glycerate kinase family DKK66_02585 PF00155 Aminotransferase class I and II DKK66_02595 PF16970 Type-1 fimbrial protein, A DKK66_02600 PF16970 Type-1 fimbrial protein, A DKK66_02605 PF02753 Pili assembly chaperone PapD, C-terminal domain DKK66_02605 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DKK66_02610 PF00577 Outer membrane usher protein DKK66_02610 PF13953 PapC C-terminal domain DKK66_02610 PF13954 PapC N-terminal domain DKK66_02645 PF01066 CDP-alcohol phosphatidyltransferase DKK66_02650 PF02151 UvrB/uvrC motif DKK66_02650 PF08459 UvrC Helix-hairpin-helix N-terminal DKK66_02650 PF01541 GIY-YIG catalytic domain DKK66_02660 PF00478 IMP dehydrogenase / GMP reductase domain DKK66_02660 PF00571 CBS domain DKK66_02670 PF00561 alpha/beta hydrolase fold DKK66_02680 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DKK66_02690 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DKK66_02690 PF01872 RibD C-terminal domain DKK66_02695 PF03477 ATP cone domain DKK66_02700 PF00464 Serine hydroxymethyltransferase DKK66_02710 PF14834 Glutathione S-transferase, C-terminal domain DKK66_02710 PF02798 Glutathione S-transferase, N-terminal domain DKK66_02715 PF00920 Dehydratase family DKK66_02720 PF01790 Prolipoprotein diacylglyceryl transferase DKK66_02730 PF00005 ABC transporter DKK66_02735 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_02740 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKK66_02745 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_02750 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_02770 PF00403 Heavy-metal-associated domain DKK66_02775 PF01544 CorA-like Mg2+ transporter protein DKK66_02780 PF02541 Ppx/GppA phosphatase family DKK66_02785 PF01895 PhoU domain DKK66_02790 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DKK66_02795 PF02542 YgbB family DKK66_02800 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DKK66_02805 PF00929 Exonuclease DKK66_02810 PF00075 RNase H DKK66_02815 PF08241 Methyltransferase domain DKK66_02820 PF16123 Hydroxyacylglutathione hydrolase C-terminus DKK66_02820 PF00753 Metallo-beta-lactamase superfamily DKK66_02825 PF01464 Transglycosylase SLT domain DKK66_02825 PF01476 LysM domain DKK66_02830 PF02580 D-Tyr-tRNA(Tyr) deacylase DKK66_02835 PF02567 Phenazine biosynthesis-like protein DKK66_02840 PF03883 Peroxide stress protein YaaA DKK66_02845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKK66_02845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DKK66_02865 PF09334 tRNA synthetases class I (M) DKK66_02865 PF01588 Putative tRNA binding domain DKK66_02865 PF08264 Anticodon-binding domain of tRNA DKK66_02870 PF07690 Major Facilitator Superfamily DKK66_02875 PF10609 NUBPL iron-transfer P-loop NTPase DKK66_02880 PF01177 Asp/Glu/Hydantoin racemase DKK66_02890 PF01337 Barstar (barnase inhibitor) DKK66_02895 PF00155 Aminotransferase class I and II DKK66_02905 PF00267 Gram-negative porin DKK66_02910 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DKK66_02910 PF12833 Helix-turn-helix domain DKK66_02910 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKK66_02910 PF02805 Metal binding domain of Ada DKK66_02915 PF13532 2OG-Fe(II) oxygenase superfamily DKK66_02920 PF02801 Beta-ketoacyl synthase, C-terminal domain DKK66_02920 PF00109 Beta-ketoacyl synthase, N-terminal domain DKK66_02925 PF00550 Phosphopantetheine attachment site DKK66_02935 PF01264 Chorismate synthase DKK66_02950 PF11940 Domain of unknown function (DUF3458) Ig-like fold DKK66_02950 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DKK66_02950 PF01433 Peptidase family M1 domain DKK66_02960 PF00115 Cytochrome C and Quinol oxidase polypeptide I DKK66_02975 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP DKK66_02975 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DKK66_02980 PF12801 4Fe-4S binding domain DKK66_02980 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase DKK66_02980 PF13746 4Fe-4S dicluster domain DKK66_02995 PF01212 Beta-eliminating lyase DKK66_03000 PF00854 POT family DKK66_03005 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DKK66_03010 PF00535 Glycosyl transferase family 2 DKK66_03025 PF00849 RNA pseudouridylate synthase DKK66_03030 PF03061 Thioesterase superfamily DKK66_03040 PF04172 LrgB-like family DKK66_03045 PF03788 LrgA family DKK66_03050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_03050 PF03466 LysR substrate binding domain DKK66_03065 PF02629 CoA binding domain DKK66_03065 PF00549 CoA-ligase DKK66_03070 PF00549 CoA-ligase DKK66_03070 PF08442 ATP-grasp domain DKK66_03075 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKK66_03075 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DKK66_03085 PF02817 e3 binding domain DKK66_03085 PF00364 Biotin-requiring enzyme DKK66_03085 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKK66_03090 PF16078 2-oxoglutarate dehydrogenase N-terminus DKK66_03090 PF02779 Transketolase, pyrimidine binding domain DKK66_03090 PF00676 Dehydrogenase E1 component DKK66_03090 PF16870 2-oxoglutarate dehydrogenase C-terminal DKK66_03095 PF00285 Citrate synthase, C-terminal domain DKK66_03100 PF03937 Flavinator of succinate dehydrogenase DKK66_03105 PF13085 2Fe-2S iron-sulfur cluster binding domain DKK66_03110 PF02910 Fumarate reductase flavoprotein C-term DKK66_03110 PF00890 FAD binding domain DKK66_03120 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DKK66_03125 PF00392 Bacterial regulatory proteins, gntR family DKK66_03125 PF07702 UTRA domain DKK66_03130 PF00056 lactate/malate dehydrogenase, NAD binding domain DKK66_03130 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DKK66_03140 PF01336 OB-fold nucleic acid binding domain DKK66_03140 PF00152 tRNA synthetases class II (D, K and N) DKK66_03145 PF00990 Diguanylate cyclase, GGDEF domain DKK66_03145 PF00563 EAL domain DKK66_03145 PF03707 Bacterial signalling protein N terminal repeat DKK66_03150 PF01979 Amidohydrolase family DKK66_03160 PF00392 Bacterial regulatory proteins, gntR family DKK66_03160 PF07729 FCD domain DKK66_03165 PF00186 Dihydrofolate reductase DKK66_03170 PF00303 Thymidylate synthase DKK66_03175 PF01312 FlhB HrpN YscU SpaS Family DKK66_03180 PF00771 FHIPEP family DKK66_03185 PF00448 SRP54-type protein, GTPase domain DKK66_03195 PF04545 Sigma-70, region 4 DKK66_03195 PF04539 Sigma-70 region 3 DKK66_03195 PF04542 Sigma-70 region 2 DKK66_03200 PF01618 MotA/TolQ/ExbB proton channel family DKK66_03205 PF13307 Helicase C-terminal domain DKK66_03205 PF04851 Type III restriction enzyme, res subunit DKK66_03205 PF00929 Exonuclease DKK66_03230 PF03232 Ubiquinone biosynthesis protein COQ7 DKK66_03235 PF00719 Inorganic pyrophosphatase DKK66_03245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_03245 PF03466 LysR substrate binding domain DKK66_03260 PF05209 Septum formation inhibitor MinC, N-terminal domain DKK66_03260 PF03775 Septum formation inhibitor MinC, C-terminal domain DKK66_03265 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DKK66_03270 PF03776 Septum formation topological specificity factor MinE DKK66_03275 PF03466 LysR substrate binding domain DKK66_03275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_03280 PF00155 Aminotransferase class I and II DKK66_03290 PF03449 Transcription elongation factor, N-terminal DKK66_03290 PF01272 Transcription elongation factor, GreA/GreB, C-term DKK66_03300 PF01479 S4 domain DKK66_03300 PF00849 RNA pseudouridylate synthase DKK66_03305 PF04079 Segregation and condensation complex subunit ScpB DKK66_03310 PF02616 Segregation and condensation protein ScpA DKK66_03315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_03315 PF03466 LysR substrate binding domain DKK66_03330 PF00579 tRNA synthetases class I (W and Y) DKK66_03335 PF02163 Peptidase family M50 DKK66_03340 PF01300 Telomere recombination DKK66_03345 PF02811 PHP domain DKK66_03365 PF17763 Glutaminase/Asparaginase C-terminal domain DKK66_03365 PF00710 Asparaginase, N-terminal DKK66_03380 PF07702 UTRA domain DKK66_03380 PF00392 Bacterial regulatory proteins, gntR family DKK66_03400 PF00005 ABC transporter DKK66_03400 PF08402 TOBE domain DKK66_03410 PF07759 Protein of unknown function (DUF1615) DKK66_03415 PF03741 Integral membrane protein TerC family DKK66_03420 PF01566 Natural resistance-associated macrophage protein DKK66_03425 PF01145 SPFH domain / Band 7 family DKK66_03430 PF01145 SPFH domain / Band 7 family DKK66_03445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_03445 PF03466 LysR substrate binding domain DKK66_03465 PF13416 Bacterial extracellular solute-binding protein DKK66_03480 PF01425 Amidase DKK66_03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_03485 PF03466 LysR substrate binding domain DKK66_03490 PF04371 Porphyromonas-type peptidyl-arginine deiminase DKK66_03505 PF02080 TrkA-C domain DKK66_03505 PF02254 TrkA-N domain DKK66_03505 PF00999 Sodium/hydrogen exchanger family DKK66_03510 PF01380 SIS domain DKK66_03510 PF00571 CBS domain DKK66_03525 PF03968 OstA-like protein DKK66_03530 PF12399 Branched-chain amino acid ATP-binding cassette transporter DKK66_03530 PF00005 ABC transporter DKK66_03535 PF00309 Sigma-54 factor, Activator interacting domain (AID) DKK66_03535 PF04963 Sigma-54 factor, core binding domain DKK66_03535 PF04552 Sigma-54, DNA binding domain DKK66_03540 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DKK66_03545 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DKK66_03550 PF07475 HPr Serine kinase C-terminal domain DKK66_03550 PF02603 HPr Serine kinase N terminus DKK66_03555 PF03668 P-loop ATPase protein family DKK66_03560 PF02441 Flavoprotein DKK66_03565 PF01256 Carbohydrate kinase DKK66_03565 PF03853 YjeF-related protein N-terminus DKK66_03575 PF00512 His Kinase A (phospho-acceptor) domain DKK66_03575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_03575 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKK66_03580 PF11849 Domain of unknown function (DUF3369) DKK66_03585 PF03006 Haemolysin-III related DKK66_03590 PF05191 Adenylate kinase, active site lid DKK66_03595 PF02348 Cytidylyltransferase DKK66_03600 PF03966 Trm112p-like protein DKK66_03605 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DKK66_03610 PF02472 Biopolymer transport protein ExbD/TolR DKK66_03615 PF01618 MotA/TolQ/ExbB proton channel family DKK66_03620 PF13742 OB-fold nucleic acid binding domain DKK66_03620 PF02601 Exonuclease VII, large subunit DKK66_03635 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DKK66_03635 PF01676 Metalloenzyme superfamily DKK66_03640 PF01551 Peptidase family M23 DKK66_03645 PF03572 Peptidase family S41 DKK66_03645 PF13180 PDZ domain DKK66_03650 PF00696 Amino acid kinase family DKK66_03650 PF00583 Acetyltransferase (GNAT) family DKK66_03655 PF04362 Bacterial Fe(2+) trafficking DKK66_03660 PF02503 Polyphosphate kinase middle domain DKK66_03660 PF13089 Polyphosphate kinase N-terminal domain DKK66_03660 PF17941 Polyphosphate kinase C-terminal domain 1 DKK66_03660 PF13090 Polyphosphate kinase C-terminal domain 2 DKK66_03670 PF00005 ABC transporter DKK66_03670 PF12848 ABC transporter DKK66_03680 PF01551 Peptidase family M23 DKK66_03680 PF01476 LysM domain DKK66_03685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKK66_03690 PF07759 Protein of unknown function (DUF1615) DKK66_03715 PF00696 Amino acid kinase family DKK66_03715 PF01842 ACT domain DKK66_03715 PF13840 ACT domain DKK66_03720 PF02634 FdhD/NarQ family DKK66_03725 PF00384 Molybdopterin oxidoreductase DKK66_03725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DKK66_03725 PF01568 Molydopterin dinucleotide binding domain DKK66_03730 PF00384 Molybdopterin oxidoreductase DKK66_03730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DKK66_03730 PF01568 Molydopterin dinucleotide binding domain DKK66_03735 PF12800 4Fe-4S binding domain DKK66_03735 PF09163 Formate dehydrogenase N, transmembrane DKK66_03735 PF13247 4Fe-4S dicluster domain DKK66_03740 PF01292 Prokaryotic cytochrome b561 DKK66_03745 PF04216 Protein involved in formate dehydrogenase formation DKK66_03750 PF00072 Response regulator receiver domain DKK66_03760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_03760 PF02895 Signal transducing histidine kinase, homodimeric domain DKK66_03760 PF09078 CheY binding DKK66_03760 PF01584 CheW-like domain DKK66_03760 PF01627 Hpt domain DKK66_03770 PF01584 CheW-like domain DKK66_03775 PF01584 CheW-like domain DKK66_03780 PF03975 CheD chemotactic sensory transduction DKK66_03785 PF01339 CheB methylesterase DKK66_03785 PF00072 Response regulator receiver domain DKK66_03790 PF00990 Diguanylate cyclase, GGDEF domain DKK66_03790 PF01590 GAF domain DKK66_03790 PF00360 Phytochrome region DKK66_03790 PF00563 EAL domain DKK66_03795 PF01636 Phosphotransferase enzyme family DKK66_03805 PF12390 Selenocysteine synthase N terminal DKK66_03805 PF03841 L-seryl-tRNA selenium transferase DKK66_03810 PF06942 GlpM protein DKK66_03820 PF09107 Elongation factor SelB, winged helix DKK66_03820 PF09106 Elongation factor SelB, winged helix DKK66_03820 PF03144 Elongation factor Tu domain 2 DKK66_03820 PF00009 Elongation factor Tu GTP binding domain DKK66_03835 PF08447 PAS fold DKK66_03835 PF13426 PAS domain DKK66_03835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_03840 PF02754 Cysteine-rich domain DKK66_03845 PF11870 Domain of unknown function (DUF3390) DKK66_03845 PF02589 LUD domain DKK66_03845 PF13183 4Fe-4S dicluster domain DKK66_03855 PF00271 Helicase conserved C-terminal domain DKK66_03855 PF00270 DEAD/DEAH box helicase DKK66_03860 PF03186 CobD/Cbib protein DKK66_03860 PF17113 Regulatory signalling modulator protein AmpE DKK66_03880 PF00291 Pyridoxal-phosphate dependent enzyme DKK66_03880 PF14821 Threonine synthase N terminus DKK66_03890 PF03447 Homoserine dehydrogenase, NAD binding domain DKK66_03890 PF00742 Homoserine dehydrogenase DKK66_03890 PF01842 ACT domain DKK66_03895 PF00155 Aminotransferase class I and II DKK66_03900 PF04430 Protein of unknown function (DUF498/DUF598) DKK66_03905 PF02627 Carboxymuconolactone decarboxylase family DKK66_03910 PF00158 Sigma-54 interaction domain DKK66_03910 PF00072 Response regulator receiver domain DKK66_03910 PF02954 Bacterial regulatory protein, Fis family DKK66_03920 PF00106 short chain dehydrogenase DKK66_03925 PF01144 Coenzyme A transferase DKK66_03930 PF01144 Coenzyme A transferase DKK66_03935 PF03109 ABC1 family DKK66_03950 PF01209 ubiE/COQ5 methyltransferase family DKK66_03960 PF02547 Queuosine biosynthesis protein DKK66_03965 PF01220 Dehydroquinase class II DKK66_03970 PF00364 Biotin-requiring enzyme DKK66_03975 PF02785 Biotin carboxylase C-terminal domain DKK66_03975 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKK66_03975 PF00289 Biotin carboxylase, N-terminal domain DKK66_04000 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DKK66_04000 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DKK66_04010 PF02556 Preprotein translocase subunit SecB DKK66_04015 PF00462 Glutaredoxin DKK66_04025 PF00270 DEAD/DEAH box helicase DKK66_04025 PF00271 Helicase conserved C-terminal domain DKK66_04025 PF17764 3′ DNA-binding domain (3′BD) DKK66_04025 PF18074 Primosomal protein N C-terminal domain DKK66_04025 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DKK66_04030 PF01208 Uroporphyrinogen decarboxylase (URO-D) DKK66_04045 PF02417 Chromate transporter DKK66_04050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_04050 PF03466 LysR substrate binding domain DKK66_04060 PF00873 AcrB/AcrD/AcrF family DKK66_04065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKK66_04070 PF06725 3D domain DKK66_04070 PF03562 MltA specific insert domain DKK66_04080 PF00267 Gram-negative porin DKK66_04085 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DKK66_04085 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DKK66_04090 PF03466 LysR substrate binding domain DKK66_04090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_04095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_04095 PF08447 PAS fold DKK66_04100 PF02743 Cache domain DKK66_04100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_04100 PF00512 His Kinase A (phospho-acceptor) domain DKK66_04105 PF02954 Bacterial regulatory protein, Fis family DKK66_04105 PF00072 Response regulator receiver domain DKK66_04105 PF00158 Sigma-54 interaction domain DKK66_04110 PF00710 Asparaginase, N-terminal DKK66_04110 PF17763 Glutaminase/Asparaginase C-terminal domain DKK66_04115 PF00375 Sodium:dicarboxylate symporter family DKK66_04120 PF03979 Sigma-70 factor, region 1.1 DKK66_04120 PF04545 Sigma-70, region 4 DKK66_04120 PF04542 Sigma-70 region 2 DKK66_04120 PF00140 Sigma-70 factor, region 1.2 DKK66_04120 PF04546 Sigma-70, non-essential region DKK66_04120 PF04539 Sigma-70 region 3 DKK66_04125 PF08275 DNA primase catalytic core, N-terminal domain DKK66_04125 PF10410 DnaB-helicase binding domain of primase DKK66_04125 PF01807 CHC2 zinc finger DKK66_04125 PF08278 DNA primase DnaG DnaB-binding DKK66_04135 PF01165 Ribosomal protein S21 DKK66_04140 PF05690 Thiazole biosynthesis protein ThiG DKK66_04145 PF02597 ThiS family DKK66_04145 PF05690 Thiazole biosynthesis protein ThiG DKK66_04150 PF13291 ACT domain DKK66_04150 PF04607 Region found in RelA / SpoT proteins DKK66_04150 PF02824 TGS domain DKK66_04155 PF01192 RNA polymerase Rpb6 DKK66_04160 PF00625 Guanylate kinase DKK66_04165 PF00860 Permease family DKK66_04170 PF00156 Phosphoribosyl transferase domain DKK66_04180 PF03551 Transcriptional regulator PadR-like family DKK66_04190 PF00696 Amino acid kinase family DKK66_04195 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DKK66_04195 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DKK66_04205 PF13520 Amino acid permease DKK66_04215 PF00970 Oxidoreductase FAD-binding domain DKK66_04215 PF00175 Oxidoreductase NAD-binding domain DKK66_04215 PF00111 2Fe-2S iron-sulfur cluster binding domain DKK66_04225 PF02390 Putative methyltransferase DKK66_04230 PF00255 Glutathione peroxidase DKK66_04240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKK66_04240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DKK66_04250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKK66_04255 PF09335 SNARE associated Golgi protein DKK66_04260 PF00842 Alanine racemase, C-terminal domain DKK66_04260 PF01168 Alanine racemase, N-terminal domain DKK66_04265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DKK66_04265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DKK66_04265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DKK66_04265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DKK66_04270 PF00809 Pterin binding enzyme DKK66_04275 PF01434 Peptidase family M41 DKK66_04275 PF17862 AAA+ lid domain DKK66_04275 PF00004 ATPase family associated with various cellular activities (AAA) DKK66_04275 PF06480 FtsH Extracellular DKK66_04280 PF01728 FtsJ-like methyltransferase DKK66_04285 PF01985 CRS1 / YhbY (CRM) domain DKK66_04295 PF01272 Transcription elongation factor, GreA/GreB, C-term DKK66_04295 PF03449 Transcription elongation factor, N-terminal DKK66_04300 PF02142 MGS-like domain DKK66_04300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKK66_04300 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DKK66_04305 PF01810 LysE type translocator DKK66_04310 PF00117 Glutamine amidotransferase class-I DKK66_04310 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DKK66_04315 PF02770 Acyl-CoA dehydrogenase, middle domain DKK66_04315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKK66_04315 PF12806 Acetyl-CoA dehydrogenase C-terminal like DKK66_04315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKK66_04320 PF01012 Electron transfer flavoprotein domain DKK66_04320 PF00766 Electron transfer flavoprotein FAD-binding domain DKK66_04325 PF01012 Electron transfer flavoprotein domain DKK66_04330 PF01575 MaoC like domain DKK66_04340 PF08331 Domain of unknown function (DUF1730) DKK66_04345 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DKK66_04350 PF11741 AMIN domain DKK66_04350 PF01520 N-acetylmuramoyl-L-alanine amidase DKK66_04355 PF03884 DNA gyrase inhibitor YacG DKK66_04360 PF07072 Cell division protein DKK66_04365 PF01121 Dephospho-CoA kinase DKK66_04370 PF01478 Type IV leader peptidase family DKK66_04370 PF06750 Bacterial Peptidase A24 N-terminal domain DKK66_04375 PF00482 Type II secretion system (T2SS), protein F DKK66_04380 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DKK66_04380 PF00437 Type II/IV secretion system protein DKK66_04385 PF00267 Gram-negative porin DKK66_04390 PF03441 FAD binding domain of DNA photolyase DKK66_04390 PF00875 DNA photolyase DKK66_04395 PF10531 SLBB domain DKK66_04400 PF01578 Cytochrome C assembly protein DKK66_04405 PF02881 SRP54-type protein, helical bundle domain DKK66_04405 PF02978 Signal peptide binding domain DKK66_04405 PF00448 SRP54-type protein, GTPase domain DKK66_04415 PF00206 Lyase DKK66_04415 PF08328 Adenylosuccinate lyase C-terminal DKK66_04425 PF01323 DSBA-like thioredoxin domain DKK66_04425 PF00085 Thioredoxin DKK66_04435 PF01078 Magnesium chelatase, subunit ChlI DKK66_04435 PF13335 Magnesium chelatase, subunit ChlI C-terminal DKK66_04440 PF04380 Membrane fusogenic activity DKK66_04445 PF00543 Nitrogen regulatory protein P-II DKK66_04450 PF00909 Ammonium Transporter Family DKK66_04455 PF02773 S-adenosylmethionine synthetase, C-terminal domain DKK66_04455 PF00438 S-adenosylmethionine synthetase, N-terminal domain DKK66_04455 PF02772 S-adenosylmethionine synthetase, central domain DKK66_04465 PF03279 Bacterial lipid A biosynthesis acyltransferase DKK66_04475 PF00361 Proton-conducting membrane transporter DKK66_04480 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus DKK66_04480 PF00361 Proton-conducting membrane transporter DKK66_04485 PF00361 Proton-conducting membrane transporter DKK66_04485 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DKK66_04490 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DKK66_04495 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DKK66_04500 PF12838 4Fe-4S dicluster domain DKK66_04505 PF00146 NADH dehydrogenase DKK66_04510 PF00384 Molybdopterin oxidoreductase DKK66_04510 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DKK66_04510 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal DKK66_04515 PF10531 SLBB domain DKK66_04515 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DKK66_04515 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DKK66_04525 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DKK66_04530 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DKK66_04535 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DKK66_04540 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DKK66_04550 PF03840 Preprotein translocase SecG subunit DKK66_04555 PF00121 Triosephosphate isomerase DKK66_04560 PF12849 PBP superfamily domain DKK66_04565 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_04570 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_04575 PF00005 ABC transporter DKK66_04580 PF01384 Phosphate transporter family DKK66_04585 PF17191 RecG wedge domain DKK66_04585 PF00270 DEAD/DEAH box helicase DKK66_04585 PF00271 Helicase conserved C-terminal domain DKK66_04595 PF02567 Phenazine biosynthesis-like protein DKK66_04610 PF01725 Ham1 family DKK66_04615 PF01207 Dihydrouridine synthase (Dus) DKK66_04620 PF01040 UbiA prenyltransferase family DKK66_04625 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DKK66_04630 PF00510 Cytochrome c oxidase subunit III DKK66_04635 PF00115 Cytochrome C and Quinol oxidase polypeptide I DKK66_04640 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DKK66_04640 PF06481 COX Aromatic Rich Motif DKK66_04645 PF00672 HAMP domain DKK66_04645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_04650 PF00486 Transcriptional regulatory protein, C terminal DKK66_04650 PF00072 Response regulator receiver domain DKK66_04655 PF00512 His Kinase A (phospho-acceptor) domain DKK66_04655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_04655 PF00672 HAMP domain DKK66_04665 PF00089 Trypsin DKK66_04670 PF01138 3' exoribonuclease family, domain 1 DKK66_04670 PF03725 3' exoribonuclease family, domain 2 DKK66_04680 PF00805 Pentapeptide repeats (8 copies) DKK66_04680 PF00069 Protein kinase domain DKK66_04685 PF08340 Domain of unknown function (DUF1732) DKK66_04685 PF03755 YicC-like family, N-terminal region DKK66_04705 PF06906 Protein of unknown function (DUF1272) DKK66_04710 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKK66_04710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKK66_04715 PF01312 FlhB HrpN YscU SpaS Family DKK66_04750 PF00700 Bacterial flagellin C-terminal helical region DKK66_04750 PF00669 Bacterial flagellin N-terminal helical region DKK66_04755 PF00535 Glycosyl transferase family 2 DKK66_04760 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DKK66_04780 PF00171 Aldehyde dehydrogenase family DKK66_04785 PF13193 AMP-binding enzyme C-terminal domain DKK66_04785 PF00501 AMP-binding enzyme DKK66_04790 PF01048 Phosphorylase superfamily DKK66_04805 PF03652 Holliday junction resolvase DKK66_04810 PF02622 Uncharacterized ACR, COG1678 DKK66_04815 PF06470 SMC proteins Flexible Hinge Domain DKK66_04815 PF02463 RecF/RecN/SMC N terminal domain DKK66_04820 PF07690 Major Facilitator Superfamily DKK66_04835 PF00483 Nucleotidyl transferase DKK66_04845 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DKK66_04845 PF12826 Helix-hairpin-helix motif DKK66_04845 PF03120 NAD-dependent DNA ligase OB-fold domain DKK66_04845 PF01653 NAD-dependent DNA ligase adenylation domain DKK66_04845 PF00533 BRCA1 C Terminus (BRCT) domain DKK66_04855 PF04055 Radical SAM superfamily DKK66_04855 PF06463 Molybdenum Cofactor Synthesis C DKK66_04860 PF01047 MarR family DKK66_04865 PF01292 Prokaryotic cytochrome b561 DKK66_04870 PF04264 YceI-like domain DKK66_04875 PF04264 YceI-like domain DKK66_04880 PF01425 Amidase DKK66_04885 PF07690 Major Facilitator Superfamily DKK66_04890 PF01926 50S ribosome-binding GTPase DKK66_04915 PF02515 CoA-transferase family III DKK66_04920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKK66_04920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKK66_04920 PF02770 Acyl-CoA dehydrogenase, middle domain DKK66_04925 PF01614 Bacterial transcriptional regulator DKK66_04925 PF09339 IclR helix-turn-helix domain DKK66_04935 PF00696 Amino acid kinase family DKK66_04940 PF00440 Bacterial regulatory proteins, tetR family DKK66_04940 PF08361 MAATS-type transcriptional repressor, C-terminal region DKK66_04945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKK66_04950 PF00873 AcrB/AcrD/AcrF family DKK66_04955 PF02321 Outer membrane efflux protein DKK66_04960 PF00202 Aminotransferase class-III DKK66_04965 PF00171 Aldehyde dehydrogenase family DKK66_04985 PF00155 Aminotransferase class I and II DKK66_04985 PF00392 Bacterial regulatory proteins, gntR family DKK66_05025 PF01960 ArgJ family DKK66_05030 PF00570 HRDC domain DKK66_05030 PF00270 DEAD/DEAH box helicase DKK66_05030 PF00271 Helicase conserved C-terminal domain DKK66_05030 PF16124 RecQ zinc-binding DKK66_05030 PF09382 RQC domain DKK66_05040 PF13614 AAA domain DKK66_05045 PF00512 His Kinase A (phospho-acceptor) domain DKK66_05045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_05050 PF00072 Response regulator receiver domain DKK66_05050 PF00990 Diguanylate cyclase, GGDEF domain DKK66_05055 PF03772 Competence protein DKK66_05055 PF00753 Metallo-beta-lactamase superfamily DKK66_05060 PF04445 Putative SAM-dependent methyltransferase DKK66_05065 PF02308 MgtC family DKK66_05075 PF04102 SlyX DKK66_05090 PF00155 Aminotransferase class I and II DKK66_05095 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DKK66_05095 PF14602 Hexapeptide repeat of succinyl-transferase DKK66_05095 PF00132 Bacterial transferase hexapeptide (six repeats) DKK66_05100 PF00005 ABC transporter DKK66_05105 PF02405 Permease MlaE DKK66_05110 PF02470 MlaD protein DKK66_05125 PF04333 MlaA lipoprotein DKK66_05130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DKK66_05140 PF01061 ABC-2 type transporter DKK66_05145 PF00005 ABC transporter DKK66_05180 PF00291 Pyridoxal-phosphate dependent enzyme DKK66_05185 PF03922 OmpW family DKK66_05190 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DKK66_05195 PF04320 Protein with unknown function (DUF469) DKK66_05215 PF00206 Lyase DKK66_05215 PF10415 Fumarase C C-terminus DKK66_05220 PF00300 Histidine phosphatase superfamily (branch 1) DKK66_05225 PF03466 LysR substrate binding domain DKK66_05225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_05230 PF00990 Diguanylate cyclase, GGDEF domain DKK66_05230 PF17158 Membrane-associated sensor, integral membrane domain DKK66_05235 PF02719 Polysaccharide biosynthesis protein DKK66_05240 PF02397 Bacterial sugar transferase DKK66_05245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DKK66_05260 PF00534 Glycosyl transferases group 1 DKK66_05260 PF13579 Glycosyl transferase 4-like domain DKK66_05270 PF13439 Glycosyltransferase Family 4 DKK66_05270 PF00534 Glycosyl transferases group 1 DKK66_05290 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DKK66_05295 PF00132 Bacterial transferase hexapeptide (six repeats) DKK66_05305 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DKK66_05305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DKK66_05310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DKK66_05310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DKK66_05310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DKK66_05320 PF01171 PP-loop family DKK66_05345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_05350 PF01966 HD domain DKK66_05355 PF01479 S4 domain DKK66_05355 PF00849 RNA pseudouridylate synthase DKK66_05365 PF03707 Bacterial signalling protein N terminal repeat DKK66_05365 PF00563 EAL domain DKK66_05365 PF00990 Diguanylate cyclase, GGDEF domain DKK66_05370 PF00356 Bacterial regulatory proteins, lacI family DKK66_05370 PF13407 Periplasmic binding protein domain DKK66_05375 PF13407 Periplasmic binding protein domain DKK66_05380 PF02653 Branched-chain amino acid transport system / permease component DKK66_05385 PF00005 ABC transporter DKK66_05390 PF05025 RbsD / FucU transport protein family DKK66_05395 PF00294 pfkB family carbohydrate kinase DKK66_05410 PF01938 TRAM domain DKK66_05410 PF00919 Uncharacterized protein family UPF0004 DKK66_05410 PF04055 Radical SAM superfamily DKK66_05425 PF02562 PhoH-like protein DKK66_05430 PF02130 Uncharacterized protein family UPF0054 DKK66_05435 PF00571 CBS domain DKK66_05435 PF03471 Transporter associated domain DKK66_05440 PF00795 Carbon-nitrogen hydrolase DKK66_05445 PF00672 HAMP domain DKK66_05445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_05445 PF17200 Single Cache domain 2 DKK66_05450 PF03476 MOSC N-terminal beta barrel domain DKK66_05450 PF03473 MOSC domain DKK66_05450 PF00111 2Fe-2S iron-sulfur cluster binding domain DKK66_05455 PF01196 Ribosomal protein L17 DKK66_05460 PF01000 RNA polymerase Rpb3/RpoA insert domain DKK66_05460 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DKK66_05460 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DKK66_05465 PF00163 Ribosomal protein S4/S9 N-terminal domain DKK66_05465 PF01479 S4 domain DKK66_05470 PF00411 Ribosomal protein S11 DKK66_05475 PF00416 Ribosomal protein S13/S18 DKK66_05480 PF00444 Ribosomal protein L36 DKK66_05485 PF00344 SecY translocase DKK66_05490 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DKK66_05495 PF00327 Ribosomal protein L30p/L7e DKK66_05500 PF03719 Ribosomal protein S5, C-terminal domain DKK66_05500 PF00333 Ribosomal protein S5, N-terminal domain DKK66_05505 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DKK66_05510 PF00347 Ribosomal protein L6 DKK66_05515 PF00410 Ribosomal protein S8 DKK66_05520 PF00253 Ribosomal protein S14p/S29e DKK66_05525 PF00281 Ribosomal protein L5 DKK66_05525 PF00673 ribosomal L5P family C-terminus DKK66_05530 PF00467 KOW motif DKK66_05530 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DKK66_05535 PF00238 Ribosomal protein L14p/L23e DKK66_05540 PF00366 Ribosomal protein S17 DKK66_05545 PF00831 Ribosomal L29 protein DKK66_05550 PF00252 Ribosomal protein L16p/L10e DKK66_05555 PF07650 KH domain DKK66_05555 PF00189 Ribosomal protein S3, C-terminal domain DKK66_05560 PF00237 Ribosomal protein L22p/L17e DKK66_05565 PF00203 Ribosomal protein S19 DKK66_05570 PF03947 Ribosomal Proteins L2, C-terminal domain DKK66_05570 PF00181 Ribosomal Proteins L2, RNA binding domain DKK66_05575 PF00276 Ribosomal protein L23 DKK66_05580 PF00573 Ribosomal protein L4/L1 family DKK66_05585 PF00297 Ribosomal protein L3 DKK66_05590 PF00338 Ribosomal protein S10p/S20e DKK66_05595 PF03144 Elongation factor Tu domain 2 DKK66_05595 PF00009 Elongation factor Tu GTP binding domain DKK66_05595 PF03143 Elongation factor Tu C-terminal domain DKK66_05600 PF00679 Elongation factor G C-terminus DKK66_05600 PF03764 Elongation factor G, domain IV DKK66_05600 PF14492 Elongation Factor G, domain II DKK66_05600 PF00009 Elongation factor Tu GTP binding domain DKK66_05600 PF03144 Elongation factor Tu domain 2 DKK66_05605 PF00177 Ribosomal protein S7p/S5e DKK66_05610 PF00164 Ribosomal protein S12/S23 DKK66_05615 PF05000 RNA polymerase Rpb1, domain 4 DKK66_05615 PF00623 RNA polymerase Rpb1, domain 2 DKK66_05615 PF04997 RNA polymerase Rpb1, domain 1 DKK66_05615 PF04983 RNA polymerase Rpb1, domain 3 DKK66_05615 PF04998 RNA polymerase Rpb1, domain 5 DKK66_05620 PF04560 RNA polymerase Rpb2, domain 7 DKK66_05620 PF04565 RNA polymerase Rpb2, domain 3 DKK66_05620 PF04561 RNA polymerase Rpb2, domain 2 DKK66_05620 PF04563 RNA polymerase beta subunit DKK66_05620 PF00562 RNA polymerase Rpb2, domain 6 DKK66_05620 PF10385 RNA polymerase beta subunit external 1 domain DKK66_05625 PF00542 Ribosomal protein L7/L12 C-terminal domain DKK66_05625 PF16320 Ribosomal protein L7/L12 dimerisation domain DKK66_05630 PF00466 Ribosomal protein L10 DKK66_05640 PF00687 Ribosomal protein L1p/L10e family DKK66_05645 PF03946 Ribosomal protein L11, N-terminal domain DKK66_05645 PF00298 Ribosomal protein L11, RNA binding domain DKK66_05650 PF00467 KOW motif DKK66_05650 PF02357 Transcription termination factor nusG DKK66_05665 PF00009 Elongation factor Tu GTP binding domain DKK66_05665 PF03144 Elongation factor Tu domain 2 DKK66_05665 PF03143 Elongation factor Tu C-terminal domain DKK66_05685 PF00037 4Fe-4S binding domain DKK66_05700 PF00675 Insulinase (Peptidase family M16) DKK66_05700 PF05193 Peptidase M16 inactive domain DKK66_05705 PF00448 SRP54-type protein, GTPase domain DKK66_05705 PF02881 SRP54-type protein, helical bundle domain DKK66_05710 PF00005 ABC transporter DKK66_05715 PF18075 FtsX extracellular domain DKK66_05720 PF04545 Sigma-70, region 4 DKK66_05720 PF04542 Sigma-70 region 2 DKK66_05720 PF00140 Sigma-70 factor, region 1.2 DKK66_05725 PF04932 O-Antigen ligase DKK66_05725 PF11846 Virulence factor membrane-bound polymerase, C-terminal DKK66_05725 PF15864 Protein glycosylation ligase DKK66_05735 PF00114 Pilin (bacterial filament) DKK66_05735 PF07963 Prokaryotic N-terminal methylation motif DKK66_05740 PF00114 Pilin (bacterial filament) DKK66_05740 PF07963 Prokaryotic N-terminal methylation motif DKK66_05745 PF00202 Aminotransferase class-III DKK66_05755 PF00696 Amino acid kinase family DKK66_05755 PF01472 PUA domain DKK66_05770 PF00958 GMP synthase C terminal domain DKK66_05770 PF02540 NAD synthase DKK66_05770 PF00117 Glutamine amidotransferase class-I DKK66_05775 PF17864 RuvB AAA lid domain DKK66_05775 PF05491 RuvB C-terminal winged helix domain DKK66_05775 PF05496 Holliday junction DNA helicase RuvB P-loop domain DKK66_05780 PF07499 RuvA, C-terminal domain DKK66_05780 PF01330 RuvA N terminal domain DKK66_05790 PF02075 Crossover junction endodeoxyribonuclease RuvC DKK66_05795 PF00483 Nucleotidyl transferase DKK66_05800 PF01636 Phosphotransferase enzyme family DKK66_05805 PF04453 LPS transport system D DKK66_05810 PF09312 SurA N-terminal domain DKK66_05815 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DKK66_05825 PF14497 Glutathione S-transferase, C-terminal domain DKK66_05825 PF02798 Glutathione S-transferase, N-terminal domain DKK66_05835 PF03471 Transporter associated domain DKK66_05835 PF00571 CBS domain DKK66_05835 PF01595 Cyclin M transmembrane N-terminal domain DKK66_05845 PF00581 Rhodanese-like domain DKK66_05860 PF03372 Endonuclease/Exonuclease/phosphatase family DKK66_05865 PF00156 Phosphoribosyl transferase domain DKK66_05900 PF03091 CutA1 divalent ion tolerance protein DKK66_05910 PF02594 Uncharacterised ACR, YggU family COG1872 DKK66_05915 PF00210 Ferritin-like domain DKK66_05935 PF00578 AhpC/TSA family DKK66_05940 PF00899 ThiF family DKK66_05945 PF02954 Bacterial regulatory protein, Fis family DKK66_05945 PF00158 Sigma-54 interaction domain DKK66_05945 PF00072 Response regulator receiver domain DKK66_05950 PF00672 HAMP domain DKK66_05950 PF00512 His Kinase A (phospho-acceptor) domain DKK66_05950 PF00989 PAS fold DKK66_05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_05960 PF01189 16S rRNA methyltransferase RsmB/F DKK66_05960 PF01029 NusB family DKK66_05965 PF01435 Peptidase family M48 DKK66_05970 PF00551 Formyl transferase DKK66_05970 PF02911 Formyl transferase, C-terminal domain DKK66_05975 PF01327 Polypeptide deformylase DKK66_05985 PF17782 DprA winged helix domain DKK66_05985 PF02481 DNA recombination-mediator protein A DKK66_05990 PF04361 Protein of unknown function (DUF494) DKK66_05995 PF01751 Toprim domain DKK66_05995 PF13368 Topoisomerase C-terminal repeat DKK66_05995 PF01131 DNA topoisomerase DKK66_06015 PF01219 Prokaryotic diacylglycerol kinase DKK66_06020 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DKK66_06020 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DKK66_06035 PF00294 pfkB family carbohydrate kinase DKK66_06040 PF00578 AhpC/TSA family DKK66_06045 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKK66_06045 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKK66_06055 PF12146 Serine aminopeptidase, S33 DKK66_06060 PF13302 Acetyltransferase (GNAT) domain DKK66_06065 PF01259 SAICAR synthetase DKK66_06070 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DKK66_06070 PF02222 ATP-grasp domain DKK66_06075 PF00731 AIR carboxylase DKK66_06085 PF16331 TolA binding protein trimerisation DKK66_06085 PF13525 Outer membrane lipoprotein DKK66_06090 PF00691 OmpA family DKK66_06095 PF04052 TolB amino-terminal domain DKK66_06095 PF07676 WD40-like Beta Propeller Repeat DKK66_06110 PF01596 O-methyltransferase DKK66_06120 PF00990 Diguanylate cyclase, GGDEF domain DKK66_06120 PF03707 Bacterial signalling protein N terminal repeat DKK66_06120 PF00563 EAL domain DKK66_06125 PF00072 Response regulator receiver domain DKK66_06125 PF04397 LytTr DNA-binding domain DKK66_06130 PF00072 Response regulator receiver domain DKK66_06135 PF13361 UvrD-like helicase C-terminal domain DKK66_06135 PF00580 UvrD/REP helicase N-terminal domain DKK66_06150 PF02107 Flagellar L-ring protein DKK66_06170 PF06426 Serine acetyltransferase, N-terminal DKK66_06170 PF00132 Bacterial transferase hexapeptide (six repeats) DKK66_06175 PF10150 Ribonuclease E/G family DKK66_06175 PF00575 S1 RNA binding domain DKK66_06180 PF02545 Maf-like protein DKK66_06185 PF07517 SecA DEAD-like domain DKK66_06185 PF01043 SecA preprotein cross-linking domain DKK66_06185 PF02810 SEC-C motif DKK66_06185 PF07516 SecA Wing and Scaffold domain DKK66_06195 PF00005 ABC transporter DKK66_06210 PF12857 TOBE-like domain DKK66_06210 PF17850 CysA C-terminal regulatory domain DKK66_06210 PF00005 ABC transporter DKK66_06215 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_06220 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_06235 PF13426 PAS domain DKK66_06235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_06235 PF00672 HAMP domain DKK66_06240 PF00501 AMP-binding enzyme DKK66_06240 PF16177 Acetyl-coenzyme A synthetase N-terminus DKK66_06240 PF13193 AMP-binding enzyme C-terminal domain DKK66_06260 PF00171 Aldehyde dehydrogenase family DKK66_06285 PF12729 Four helix bundle sensory module for signal transduction DKK66_06285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_06285 PF00672 HAMP domain DKK66_06290 PF00120 Glutamine synthetase, catalytic domain DKK66_06305 PF00582 Universal stress protein family DKK66_06310 PF01728 FtsJ-like methyltransferase DKK66_06310 PF01479 S4 domain DKK66_06315 PF04337 Protein of unknown function, DUF480 DKK66_06335 PF00326 Prolyl oligopeptidase family DKK66_06335 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DKK66_06350 PF01212 Beta-eliminating lyase DKK66_06360 PF00899 ThiF family DKK66_06365 PF01435 Peptidase family M48 DKK66_06370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DKK66_06370 PF00005 ABC transporter DKK66_06375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DKK66_06375 PF00005 ABC transporter DKK66_06380 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_06380 PF12911 N-terminal TM domain of oligopeptide transport permease C DKK66_06385 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_06390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DKK66_06395 PF01979 Amidohydrolase family DKK66_06400 PF01206 Sulfurtransferase TusA DKK66_06425 PF01967 MoaC family DKK66_06435 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DKK66_06440 PF12327 FtsZ family, C-terminal domain DKK66_06440 PF00091 Tubulin/FtsZ family, GTPase domain DKK66_06445 PF02491 SHS2 domain inserted in FTSA DKK66_06450 PF08478 POTRA domain, FtsQ-type DKK66_06450 PF03799 Cell division protein FtsQ DKK66_06455 PF01820 D-ala D-ala ligase N-terminus DKK66_06455 PF07478 D-ala D-ala ligase C-terminus DKK66_06460 PF02875 Mur ligase family, glutamate ligase domain DKK66_06460 PF08245 Mur ligase middle domain DKK66_06460 PF01225 Mur ligase family, catalytic domain DKK66_06465 PF03033 Glycosyltransferase family 28 N-terminal domain DKK66_06465 PF04101 Glycosyltransferase family 28 C-terminal domain DKK66_06470 PF01098 Cell cycle protein DKK66_06475 PF02875 Mur ligase family, glutamate ligase domain DKK66_06475 PF08245 Mur ligase middle domain DKK66_06480 PF00953 Glycosyl transferase family 4 DKK66_06485 PF08245 Mur ligase middle domain DKK66_06485 PF02875 Mur ligase family, glutamate ligase domain DKK66_06485 PF01225 Mur ligase family, catalytic domain DKK66_06490 PF01225 Mur ligase family, catalytic domain DKK66_06490 PF02875 Mur ligase family, glutamate ligase domain DKK66_06490 PF08245 Mur ligase middle domain DKK66_06495 PF00905 Penicillin binding protein transpeptidase domain DKK66_06495 PF03717 Penicillin-binding Protein dimerisation domain DKK66_06500 PF04999 Cell division protein FtsL DKK66_06505 PF01795 MraW methylase family DKK66_06510 PF02381 MraZ protein, putative antitoxin-like DKK66_06515 PF02637 GatB domain DKK66_06515 PF02934 GatB/GatE catalytic domain DKK66_06520 PF01425 Amidase DKK66_06525 PF02686 Glu-tRNAGln amidotransferase C subunit DKK66_06535 PF04085 rod shape-determining protein MreC DKK66_06540 PF04093 rod shape-determining protein MreD DKK66_06545 PF00905 Penicillin binding protein transpeptidase domain DKK66_06545 PF03717 Penicillin-binding Protein dimerisation domain DKK66_06550 PF01098 Cell cycle protein DKK66_06565 PF04828 Glutathione-dependent formaldehyde-activating enzyme DKK66_06575 PF01914 MarC family integral membrane protein DKK66_06580 PF04314 Copper chaperone PCu(A)C DKK66_06590 PF00817 impB/mucB/samB family DKK66_06590 PF11799 impB/mucB/samB family C-terminal domain DKK66_06590 PF11798 IMS family HHH motif DKK66_06595 PF14497 Glutathione S-transferase, C-terminal domain DKK66_06595 PF13417 Glutathione S-transferase, N-terminal domain DKK66_06600 PF01734 Patatin-like phospholipase DKK66_06605 PF08241 Methyltransferase domain DKK66_06610 PF00561 alpha/beta hydrolase fold DKK66_06615 PF13188 PAS domain DKK66_06615 PF00563 EAL domain DKK66_06615 PF03707 Bacterial signalling protein N terminal repeat DKK66_06615 PF00990 Diguanylate cyclase, GGDEF domain DKK66_06620 PF00155 Aminotransferase class I and II DKK66_06625 PF06968 Biotin and Thiamin Synthesis associated domain DKK66_06625 PF04055 Radical SAM superfamily DKK66_06635 PF00588 SpoU rRNA Methylase family DKK66_06640 PF03330 Lytic transglycolase DKK66_06640 PF05036 Sporulation related domain DKK66_06645 PF01926 50S ribosome-binding GTPase DKK66_06650 PF00034 Cytochrome c DKK66_06655 PF05140 ResB-like family DKK66_06660 PF01578 Cytochrome C assembly protein DKK66_06665 PF00571 CBS domain DKK66_06665 PF03471 Transporter associated domain DKK66_06665 PF03741 Integral membrane protein TerC family DKK66_06680 PF00753 Metallo-beta-lactamase superfamily DKK66_06690 PF03502 Nucleoside-specific channel-forming protein, Tsx DKK66_06695 PF00342 Phosphoglucose isomerase DKK66_06700 PF01418 Helix-turn-helix domain, rpiR family DKK66_06700 PF02685 Glucokinase DKK66_06700 PF01380 SIS domain DKK66_06705 PF02685 Glucokinase DKK66_06710 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DKK66_06715 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DKK66_06715 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DKK66_06720 PF00920 Dehydratase family DKK66_06725 PF01081 KDPG and KHG aldolase DKK66_06730 PF00072 Response regulator receiver domain DKK66_06730 PF00486 Transcriptional regulatory protein, C terminal DKK66_06735 PF00512 His Kinase A (phospho-acceptor) domain DKK66_06735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_06740 PF01547 Bacterial extracellular solute-binding protein DKK66_06750 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_06755 PF00005 ABC transporter DKK66_06755 PF03459 TOBE domain DKK66_06755 PF17912 MalK OB fold domain DKK66_06760 PF00248 Aldo/keto reductase family DKK66_06770 PF08206 Ribonuclease B OB domain DKK66_06770 PF00773 RNB domain DKK66_06775 PF00990 Diguanylate cyclase, GGDEF domain DKK66_06775 PF00072 Response regulator receiver domain DKK66_06780 PF00455 DeoR C terminal sensor domain DKK66_06780 PF08220 DeoR-like helix-turn-helix domain DKK66_06785 PF01177 Asp/Glu/Hydantoin racemase DKK66_06790 PF12792 CSS motif domain associated with EAL DKK66_06790 PF00563 EAL domain DKK66_06795 PF00206 Lyase DKK66_06795 PF14698 Argininosuccinate lyase C-terminal DKK66_06800 PF03466 LysR substrate binding domain DKK66_06800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_06810 PF07694 5TMR of 5TMR-LYT DKK66_06810 PF06580 Histidine kinase DKK66_06810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_06815 PF06736 Protein of unknown function (DUF1211) DKK66_06825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKK66_06825 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKK66_06830 PF00034 Cytochrome c DKK66_06835 PF05199 GMC oxidoreductase DKK66_06835 PF00732 GMC oxidoreductase DKK66_06845 PF00205 Thiamine pyrophosphate enzyme, central domain DKK66_06845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DKK66_06845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DKK66_06850 PF00311 Phosphoenolpyruvate carboxylase DKK66_06855 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DKK66_06855 PF03900 Porphobilinogen deaminase, C-terminal domain DKK66_06860 PF02602 Uroporphyrinogen-III synthase HemD DKK66_06865 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase DKK66_06880 PF02233 NAD(P) transhydrogenase beta subunit DKK66_06885 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DKK66_06890 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DKK66_06890 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DKK66_06895 PF04116 Fatty acid hydroxylase superfamily DKK66_06900 PF01926 50S ribosome-binding GTPase DKK66_06900 PF10396 GTP-binding protein TrmE N-terminus DKK66_06900 PF12631 MnmE helical domain DKK66_06905 PF14849 YidC periplasmic domain DKK66_06905 PF02096 60Kd inner membrane protein DKK66_06910 PF01809 Putative membrane protein insertion efficiency factor DKK66_06915 PF00825 Ribonuclease P DKK66_06920 PF00468 Ribosomal protein L34 DKK66_06925 PF11638 DnaA N-terminal domain DKK66_06925 PF08299 Bacterial dnaA protein helix-turn-helix DKK66_06925 PF00308 Bacterial dnaA protein DKK66_06930 PF00712 DNA polymerase III beta subunit, N-terminal domain DKK66_06930 PF02767 DNA polymerase III beta subunit, central domain DKK66_06930 PF02768 DNA polymerase III beta subunit, C-terminal domain DKK66_06935 PF01751 Toprim domain DKK66_06935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_06935 PF00986 DNA gyrase B subunit, carboxyl terminus DKK66_06935 PF00204 DNA gyrase B DKK66_06935 PF18053 DNA gyrase B subunit insert domain DKK66_06940 PF00512 His Kinase A (phospho-acceptor) domain DKK66_06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_06940 PF00672 HAMP domain DKK66_06940 PF13426 PAS domain DKK66_06970 PF06594 Haemolysin-type calcium binding protein related domain DKK66_06970 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DKK66_06980 PF00196 Bacterial regulatory proteins, luxR family DKK66_06990 PF03412 Peptidase C39 family DKK66_06990 PF00005 ABC transporter DKK66_06990 PF00664 ABC transporter transmembrane region DKK66_06995 PF13439 Glycosyltransferase Family 4 DKK66_06995 PF00534 Glycosyl transferases group 1 DKK66_07005 PF12728 Helix-turn-helix domain DKK66_07005 PF02661 Fic/DOC family DKK66_07010 PF13784 Fic/DOC family N-terminal DKK66_07010 PF02661 Fic/DOC family DKK66_07060 PF04555 Restriction endonuclease XhoI DKK66_07065 PF07669 Eco57I restriction-modification methylase DKK66_07065 PF12950 TaqI-like C-terminal specificity domain DKK66_07080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_07080 PF00672 HAMP domain DKK66_07080 PF12729 Four helix bundle sensory module for signal transduction DKK66_07085 PF04960 Glutaminase DKK66_07105 PF03150 Di-haem cytochrome c peroxidase DKK66_07105 PF00034 Cytochrome c DKK66_07110 PF13458 Periplasmic binding protein DKK66_07115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_07115 PF08447 PAS fold DKK66_07115 PF13426 PAS domain DKK66_07125 PF07687 Peptidase dimerisation domain DKK66_07125 PF01546 Peptidase family M20/M25/M40 DKK66_07130 PF00990 Diguanylate cyclase, GGDEF domain DKK66_07130 PF01590 GAF domain DKK66_07130 PF00563 EAL domain DKK66_07130 PF00360 Phytochrome region DKK66_07140 PF01266 FAD dependent oxidoreductase DKK66_07150 PF03466 LysR substrate binding domain DKK66_07150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_07155 PF00291 Pyridoxal-phosphate dependent enzyme DKK66_07160 PF00005 ABC transporter DKK66_07160 PF00664 ABC transporter transmembrane region DKK66_07180 PF01914 MarC family integral membrane protein DKK66_07200 PF01042 Endoribonuclease L-PSP DKK66_07205 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKK66_07210 PF00682 HMGL-like DKK66_07210 PF07836 DmpG-like communication domain DKK66_07215 PF01118 Semialdehyde dehydrogenase, NAD binding domain DKK66_07215 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation DKK66_07220 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKK66_07225 PF03466 LysR substrate binding domain DKK66_07225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_07230 PF00171 Aldehyde dehydrogenase family DKK66_07235 PF07690 Major Facilitator Superfamily DKK66_07240 PF03466 LysR substrate binding domain DKK66_07240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_07245 PF00107 Zinc-binding dehydrogenase DKK66_07245 PF08240 Alcohol dehydrogenase GroES-like domain DKK66_07250 PF00756 Putative esterase DKK66_07265 PF00491 Arginase family DKK66_07270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_07270 PF03466 LysR substrate binding domain DKK66_07275 PF01243 Pyridoxamine 5'-phosphate oxidase DKK66_07275 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DKK66_07280 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DKK66_07280 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DKK66_07280 PF01488 Shikimate / quinate 5-dehydrogenase DKK66_07285 PF00472 RF-1 domain DKK66_07285 PF03462 PCRF domain DKK66_07290 PF03466 LysR substrate binding domain DKK66_07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_07295 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKK66_07295 PF00989 PAS fold DKK66_07295 PF01627 Hpt domain DKK66_07295 PF00512 His Kinase A (phospho-acceptor) domain DKK66_07295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_07295 PF00072 Response regulator receiver domain DKK66_07300 PF01339 CheB methylesterase DKK66_07300 PF00072 Response regulator receiver domain DKK66_07305 PF00512 His Kinase A (phospho-acceptor) domain DKK66_07305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_07305 PF00072 Response regulator receiver domain DKK66_07305 PF01627 Hpt domain DKK66_07340 PF02954 Bacterial regulatory protein, Fis family DKK66_07340 PF00072 Response regulator receiver domain DKK66_07340 PF00158 Sigma-54 interaction domain DKK66_07345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_07345 PF00512 His Kinase A (phospho-acceptor) domain DKK66_07350 PF00521 DNA gyrase/topoisomerase IV, subunit A DKK66_07355 PF13673 Acetyltransferase (GNAT) domain DKK66_07365 PF00456 Transketolase, thiamine diphosphate binding domain DKK66_07365 PF02780 Transketolase, C-terminal domain DKK66_07365 PF02779 Transketolase, pyrimidine binding domain DKK66_07370 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DKK66_07370 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DKK66_07375 PF00162 Phosphoglycerate kinase DKK66_07380 PF01810 LysE type translocator DKK66_07385 PF01116 Fructose-bisphosphate aldolase class-II DKK66_07390 PF02597 ThiS family DKK66_07395 PF02391 MoaE protein DKK66_07400 PF12804 MobA-like NTP transferase domain DKK66_07405 PF03466 LysR substrate binding domain DKK66_07405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_07415 PF00793 DAHP synthetase I family DKK66_07420 PF01258 Prokaryotic dksA/traR C4-type zinc finger DKK66_07425 PF00034 Cytochrome c DKK66_07430 PF02325 YGGT family DKK66_07435 PF14748 Pyrroline-5-carboxylate reductase dimerisation DKK66_07435 PF03807 NADP oxidoreductase coenzyme F420-dependent DKK66_07440 PF01168 Alanine racemase, N-terminal domain DKK66_07445 PF00437 Type II/IV secretion system protein DKK66_07450 PF00437 Type II/IV secretion system protein DKK66_07460 PF08668 HDOD domain DKK66_07460 PF00563 EAL domain DKK66_07465 PF00005 ABC transporter DKK66_07470 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_07475 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_07480 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKK66_07485 PF00398 Ribosomal RNA adenine dimethylase DKK66_07490 PF09335 SNARE associated Golgi protein DKK66_07495 PF01491 Frataxin-like domain DKK66_07500 PF00155 Aminotransferase class I and II DKK66_07515 PF12419 SNF2 Helicase protein DKK66_07515 PF00176 SNF2 family N-terminal domain DKK66_07515 PF00271 Helicase conserved C-terminal domain DKK66_07520 PF00202 Aminotransferase class-III DKK66_07535 PF07720 Tetratricopeptide repeat DKK66_07535 PF01435 Peptidase family M48 DKK66_07540 PF00301 Rubredoxin DKK66_07545 PF08543 Phosphomethylpyrimidine kinase DKK66_07550 PF02581 Thiamine monophosphate synthase DKK66_07560 PF02321 Outer membrane efflux protein DKK66_07575 PF00005 ABC transporter DKK66_07580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKK66_07590 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DKK66_07595 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DKK66_07600 PF00535 Glycosyl transferase family 2 DKK66_07615 PF00999 Sodium/hydrogen exchanger family DKK66_07615 PF02254 TrkA-N domain DKK66_07620 PF01595 Cyclin M transmembrane N-terminal domain DKK66_07620 PF03471 Transporter associated domain DKK66_07620 PF00571 CBS domain DKK66_07625 PF03167 Uracil DNA glycosylase superfamily DKK66_07630 PF00899 ThiF family DKK66_07630 PF00581 Rhodanese-like domain DKK66_07640 PF01964 Radical SAM ThiC family DKK66_07640 PF13667 ThiC-associated domain DKK66_07655 PF06224 Winged helix DNA-binding domain DKK66_07665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_07665 PF00672 HAMP domain DKK66_07665 PF02743 Cache domain DKK66_07670 PF01136 Peptidase family U32 DKK66_07670 PF12392 Collagenase DKK66_07700 PF09905 DNA-binding protein VF530 DKK66_07705 PF02798 Glutathione S-transferase, N-terminal domain DKK66_07705 PF00043 Glutathione S-transferase, C-terminal domain DKK66_07715 PF02146 Sir2 family DKK66_07720 PF05552 Conserved TM helix DKK66_07720 PF00924 Mechanosensitive ion channel DKK66_07725 PF11871 Domain of unknown function (DUF3391) DKK66_07725 PF01966 HD domain DKK66_07730 PF03692 Putative zinc- or iron-chelating domain DKK66_07735 PF02743 Cache domain DKK66_07735 PF00672 HAMP domain DKK66_07735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_07740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DKK66_07740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DKK66_07745 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DKK66_07745 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DKK66_07750 PF00583 Acetyltransferase (GNAT) family DKK66_07770 PF00892 EamA-like transporter family DKK66_07790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DKK66_07790 PF01411 tRNA synthetases class II (A) DKK66_07790 PF02272 DHHA1 domain DKK66_07805 PF13580 SIS domain DKK66_07810 PF00459 Inositol monophosphatase family DKK66_07815 PF04452 RNA methyltransferase DKK66_07825 PF01263 Aldose 1-epimerase DKK66_07830 PF07702 UTRA domain DKK66_07830 PF00392 Bacterial regulatory proteins, gntR family DKK66_07835 PF02673 Bacitracin resistance protein BacA DKK66_07840 PF01979 Amidohydrolase family DKK66_07845 PF00491 Arginase family DKK66_07850 PF01175 Urocanase Rossmann-like domain DKK66_07850 PF17391 Urocanase N-terminal domain DKK66_07850 PF17392 Urocanase C-terminal domain DKK66_07855 PF00221 Aromatic amino acid lyase DKK66_07860 PF03600 Citrate transporter DKK66_07900 PF00561 alpha/beta hydrolase fold DKK66_07900 PF08386 TAP-like protein DKK66_07910 PF02887 Pyruvate kinase, alpha/beta domain DKK66_07910 PF00224 Pyruvate kinase, barrel domain DKK66_07915 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DKK66_07915 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DKK66_07920 PF00230 Major intrinsic protein DKK66_07925 PF01266 FAD dependent oxidoreductase DKK66_07925 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DKK66_07940 PF00578 AhpC/TSA family DKK66_07945 PF08220 DeoR-like helix-turn-helix domain DKK66_07945 PF00455 DeoR C terminal sensor domain DKK66_07955 PF01266 FAD dependent oxidoreductase DKK66_07960 PF00155 Aminotransferase class I and II DKK66_07960 PF00392 Bacterial regulatory proteins, gntR family DKK66_07965 PF03594 Benzoate membrane transport protein DKK66_07975 PF04284 Protein of unknown function (DUF441) DKK66_07980 PF00557 Metallopeptidase family M24 DKK66_07980 PF05195 Aminopeptidase P, N-terminal domain DKK66_07990 PF01037 Lrp/AsnC ligand binding domain DKK66_07995 PF00892 EamA-like transporter family DKK66_08015 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKK66_08015 PF12833 Helix-turn-helix domain DKK66_08025 PF00005 ABC transporter DKK66_08025 PF08402 TOBE domain DKK66_08030 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_08035 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_08040 PF13416 Bacterial extracellular solute-binding protein DKK66_08045 PF00850 Histone deacetylase domain DKK66_08050 PF01645 Conserved region in glutamate synthase DKK66_08065 PF00512 His Kinase A (phospho-acceptor) domain DKK66_08065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_08065 PF00672 HAMP domain DKK66_08070 PF00072 Response regulator receiver domain DKK66_08070 PF00486 Transcriptional regulatory protein, C terminal DKK66_08090 PF00107 Zinc-binding dehydrogenase DKK66_08090 PF08240 Alcohol dehydrogenase GroES-like domain DKK66_08100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_08100 PF00672 HAMP domain DKK66_08100 PF01627 Hpt domain DKK66_08100 PF00072 Response regulator receiver domain DKK66_08100 PF17149 Periplasmic sensor domain found in signal transduction proteins DKK66_08100 PF00512 His Kinase A (phospho-acceptor) domain DKK66_08105 PF05728 Uncharacterised protein family (UPF0227) DKK66_08115 PF02310 B12 binding domain DKK66_08115 PF02965 Vitamin B12 dependent methionine synthase, activation domain DKK66_08115 PF00809 Pterin binding enzyme DKK66_08115 PF02574 Homocysteine S-methyltransferase DKK66_08115 PF02607 B12 binding domain DKK66_08120 PF00990 Diguanylate cyclase, GGDEF domain DKK66_08125 PF04325 Protein of unknown function (DUF465) DKK66_08130 PF00005 ABC transporter DKK66_08130 PF00664 ABC transporter transmembrane region DKK66_08135 PF10672 S-adenosylmethionine-dependent methyltransferase DKK66_08135 PF17785 PUA-like domain DKK66_08140 PF01966 HD domain DKK66_08155 PF01863 Protein of unknown function DUF45 DKK66_08165 PF01037 Lrp/AsnC ligand binding domain DKK66_08175 PF02627 Carboxymuconolactone decarboxylase family DKK66_08185 PF07152 YaeQ protein DKK66_08195 PF00271 Helicase conserved C-terminal domain DKK66_08195 PF00270 DEAD/DEAH box helicase DKK66_08210 PF00990 Diguanylate cyclase, GGDEF domain DKK66_08210 PF17151 Periplasmic sensor domain DKK66_08215 PF00990 Diguanylate cyclase, GGDEF domain DKK66_08215 PF00072 Response regulator receiver domain DKK66_08225 PF00849 RNA pseudouridylate synthase DKK66_08225 PF01479 S4 domain DKK66_08240 PF00210 Ferritin-like domain DKK66_08245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_08245 PF00672 HAMP domain DKK66_08245 PF02743 Cache domain DKK66_08250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_08250 PF08447 PAS fold DKK66_08255 PF13640 2OG-Fe(II) oxygenase superfamily DKK66_08255 PF18331 PKHD-type hydroxylase C-terminal domain DKK66_08260 PF07715 TonB-dependent Receptor Plug Domain DKK66_08260 PF00593 TonB dependent receptor DKK66_08265 PF02472 Biopolymer transport protein ExbD/TolR DKK66_08270 PF01618 MotA/TolQ/ExbB proton channel family DKK66_08280 PF00227 Proteasome subunit DKK66_08285 PF07724 AAA domain (Cdc48 subfamily) DKK66_08285 PF00004 ATPase family associated with various cellular activities (AAA) DKK66_08335 PF05567 Neisseria PilC beta-propeller domain DKK66_08340 PF07963 Prokaryotic N-terminal methylation motif DKK66_08340 PF14245 Type IV pilin PilA DKK66_08345 PF01467 Cytidylyltransferase-like DKK66_08350 PF03099 Biotin/lipoate A/B protein ligase family DKK66_08350 PF02237 Biotin protein ligase C terminal domain DKK66_08350 PF03309 Type III pantothenate kinase DKK66_08355 PF03309 Type III pantothenate kinase DKK66_08385 PF02654 Cobalamin-5-phosphate synthase DKK66_08395 PF02277 Phosphoribosyltransferase DKK66_08400 PF00593 TonB dependent receptor DKK66_08400 PF07715 TonB-dependent Receptor Plug Domain DKK66_08405 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DKK66_08410 PF01497 Periplasmic binding protein DKK66_08420 PF05164 Cell division protein ZapA DKK66_08425 PF01812 5-formyltetrahydrofolate cyclo-ligase family DKK66_08435 PF00561 alpha/beta hydrolase fold DKK66_08440 PF08264 Anticodon-binding domain of tRNA DKK66_08440 PF00133 tRNA synthetases class I (I, L, M and V) DKK66_08440 PF13603 Leucyl-tRNA synthetase, Domain 2 DKK66_08440 PF09334 tRNA synthetases class I (M) DKK66_08450 PF06144 DNA polymerase III, delta subunit DKK66_08450 PF14840 Processivity clamp loader gamma complex DNA pol III C-term DKK66_08460 PF10145 Phage-related minor tail protein DKK66_08460 PF01551 Peptidase family M23 DKK66_08460 PF01464 Transglycosylase SLT domain DKK66_08465 PF06078 Bacterial protein of unknown function (DUF937) DKK66_08470 PF10417 C-terminal domain of 1-Cys peroxiredoxin DKK66_08470 PF00578 AhpC/TSA family DKK66_08475 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKK66_08475 PF13192 Thioredoxin domain DKK66_08490 PF02590 Predicted SPOUT methyltransferase DKK66_08500 PF01467 Cytidylyltransferase-like DKK66_08505 PF00484 Carbonic anhydrase DKK66_08520 PF00753 Metallo-beta-lactamase superfamily DKK66_08530 PF04143 Sulphur transport DKK66_08540 PF01740 STAS domain DKK66_08540 PF00916 Sulfate permease family DKK66_08545 PF13181 Tetratricopeptide repeat DKK66_08545 PF01435 Peptidase family M48 DKK66_08550 PF00456 Transketolase, thiamine diphosphate binding domain DKK66_08550 PF17831 Pyruvate dehydrogenase E1 component middle domain DKK66_08555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKK66_08555 PF02817 e3 binding domain DKK66_08555 PF00364 Biotin-requiring enzyme DKK66_08560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DKK66_08560 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKK66_08575 PF01546 Peptidase family M20/M25/M40 DKK66_08575 PF07687 Peptidase dimerisation domain DKK66_08580 PF01156 Inosine-uridine preferring nucleoside hydrolase DKK66_08585 PF07690 Major Facilitator Superfamily DKK66_08590 PF00990 Diguanylate cyclase, GGDEF domain DKK66_08590 PF00563 EAL domain DKK66_08590 PF03707 Bacterial signalling protein N terminal repeat DKK66_08600 PF01207 Dihydrouridine synthase (Dus) DKK66_08605 PF02954 Bacterial regulatory protein, Fis family DKK66_08610 PF02142 MGS-like domain DKK66_08610 PF01808 AICARFT/IMPCHase bienzyme DKK66_08620 PF02844 Phosphoribosylglycinamide synthetase, N domain DKK66_08620 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DKK66_08620 PF02843 Phosphoribosylglycinamide synthetase, C domain DKK66_08630 PF01300 Telomere recombination DKK66_08635 PF01618 MotA/TolQ/ExbB proton channel family DKK66_08640 PF00892 EamA-like transporter family DKK66_08645 PF07702 UTRA domain DKK66_08645 PF00392 Bacterial regulatory proteins, gntR family DKK66_08650 PF01979 Amidohydrolase family DKK66_08655 PF01380 SIS domain DKK66_08660 PF02378 Phosphotransferase system, EIIC DKK66_08660 PF00367 phosphotransferase system, EIIB DKK66_08660 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DKK66_08665 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DKK66_08665 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DKK66_08670 PF01037 Lrp/AsnC ligand binding domain DKK66_08675 PF00486 Transcriptional regulatory protein, C terminal DKK66_08675 PF00072 Response regulator receiver domain DKK66_08680 PF00989 PAS fold DKK66_08680 PF11808 Phosphate regulon sensor protein PhoR DKK66_08680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_08680 PF00512 His Kinase A (phospho-acceptor) domain DKK66_08690 PF00923 Transaldolase/Fructose-6-phosphate aldolase DKK66_08695 PF01814 Hemerythrin HHE cation binding domain DKK66_08700 PF01510 N-acetylmuramoyl-L-alanine amidase DKK66_08705 PF02705 K+ potassium transporter DKK66_08710 PF04073 Aminoacyl-tRNA editing domain DKK66_08710 PF03129 Anticodon binding domain DKK66_08710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DKK66_08715 PF01464 Transglycosylase SLT domain DKK66_08715 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DKK66_08720 PF01566 Natural resistance-associated macrophage protein DKK66_08725 PF12802 MarR family DKK66_08745 PF08281 Sigma-70, region 4 DKK66_08745 PF04542 Sigma-70 region 2 DKK66_08750 PF00205 Thiamine pyrophosphate enzyme, central domain DKK66_08750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DKK66_08750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DKK66_08755 PF10369 Small subunit of acetolactate synthase DKK66_08760 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DKK66_08760 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DKK66_08765 PF01066 CDP-alcohol phosphatidyltransferase DKK66_08770 PF00682 HMGL-like DKK66_08770 PF08502 LeuA allosteric (dimerisation) domain DKK66_08780 PF00072 Response regulator receiver domain DKK66_08780 PF01966 HD domain DKK66_08785 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DKK66_08785 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DKK66_08790 PF00115 Cytochrome C and Quinol oxidase polypeptide I DKK66_08805 PF00510 Cytochrome c oxidase subunit III DKK66_08830 PF02630 SCO1/SenC DKK66_08835 PF07317 Flagellar regulator YcgR DKK66_08835 PF07238 PilZ domain DKK66_08840 PF01634 ATP phosphoribosyltransferase DKK66_08845 PF00815 Histidinol dehydrogenase DKK66_08850 PF00155 Aminotransferase class I and II DKK66_08855 PF00475 Imidazoleglycerol-phosphate dehydratase DKK66_08860 PF00117 Glutamine amidotransferase class-I DKK66_08865 PF00977 Histidine biosynthesis protein DKK66_08870 PF00977 Histidine biosynthesis protein DKK66_08875 PF01502 Phosphoribosyl-AMP cyclohydrolase DKK66_08880 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DKK66_08890 PF02416 mttA/Hcf106 family DKK66_08895 PF02416 mttA/Hcf106 family DKK66_08900 PF00902 Sec-independent protein translocase protein (TatC) DKK66_08910 PF03412 Peptidase C39 family DKK66_08910 PF00005 ABC transporter DKK66_08910 PF00664 ABC transporter transmembrane region DKK66_08915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKK66_08915 PF00529 HlyD membrane-fusion protein of T1SS DKK66_08920 PF00196 Bacterial regulatory proteins, luxR family DKK66_08940 PF02321 Outer membrane efflux protein DKK66_08945 PF00672 HAMP domain DKK66_08945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_08945 PF02743 Cache domain DKK66_08950 PF01026 TatD related DNase DKK66_08955 PF03707 Bacterial signalling protein N terminal repeat DKK66_08955 PF00990 Diguanylate cyclase, GGDEF domain DKK66_08955 PF00563 EAL domain DKK66_08980 PF06114 IrrE N-terminal-like domain DKK66_09025 PF13356 Arm DNA-binding domain DKK66_09025 PF00589 Phage integrase family DKK66_09035 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DKK66_09045 PF02021 Uncharacterised protein family UPF0102 DKK66_09050 PF13580 SIS domain DKK66_09055 PF04972 BON domain DKK66_09060 PF00563 EAL domain DKK66_09060 PF12792 CSS motif domain associated with EAL DKK66_09070 PF18389 TrmO C-terminal domain DKK66_09070 PF01980 tRNA-methyltransferase O DKK66_09080 PF13932 GidA associated domain DKK66_09080 PF01134 Glucose inhibited division protein A DKK66_09085 PF02527 rRNA small subunit methyltransferase G DKK66_09090 PF13614 AAA domain DKK66_09095 PF17762 HTH domain found in ParB protein DKK66_09095 PF02195 ParB-like nuclease domain DKK66_09105 PF00119 ATP synthase A chain DKK66_09110 PF00137 ATP synthase subunit C DKK66_09115 PF00430 ATP synthase B/B' CF(0) DKK66_09120 PF00213 ATP synthase delta (OSCP) subunit DKK66_09125 PF00306 ATP synthase alpha/beta chain, C terminal domain DKK66_09125 PF02874 ATP synthase alpha/beta family, beta-barrel domain DKK66_09125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DKK66_09130 PF00231 ATP synthase DKK66_09135 PF02874 ATP synthase alpha/beta family, beta-barrel domain DKK66_09135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DKK66_09140 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DKK66_09140 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DKK66_09145 PF00132 Bacterial transferase hexapeptide (six repeats) DKK66_09145 PF12804 MobA-like NTP transferase domain DKK66_09145 PF14602 Hexapeptide repeat of succinyl-transferase DKK66_09150 PF08220 DeoR-like helix-turn-helix domain DKK66_09150 PF00455 DeoR C terminal sensor domain DKK66_09155 PF01380 SIS domain DKK66_09185 PF00083 Sugar (and other) transporter DKK66_09190 PF00989 PAS fold DKK66_09190 PF00512 His Kinase A (phospho-acceptor) domain DKK66_09190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_09195 PF00196 Bacterial regulatory proteins, luxR family DKK66_09195 PF00072 Response regulator receiver domain DKK66_09205 PF03707 Bacterial signalling protein N terminal repeat DKK66_09205 PF00990 Diguanylate cyclase, GGDEF domain DKK66_09205 PF00563 EAL domain DKK66_09210 PF03466 LysR substrate binding domain DKK66_09210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_09215 PF02525 Flavodoxin-like fold DKK66_09220 PF08447 PAS fold DKK66_09220 PF13426 PAS domain DKK66_09220 PF05231 MASE1 DKK66_09220 PF08448 PAS fold DKK66_09220 PF00563 EAL domain DKK66_09220 PF00990 Diguanylate cyclase, GGDEF domain DKK66_09225 PF01218 Coproporphyrinogen III oxidase DKK66_09235 PF00672 HAMP domain DKK66_09235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_09235 PF00512 His Kinase A (phospho-acceptor) domain DKK66_09240 PF00072 Response regulator receiver domain DKK66_09240 PF00486 Transcriptional regulatory protein, C terminal DKK66_09245 PF13722 5TM C-terminal transporter carbon starvation CstA DKK66_09245 PF02554 Carbon starvation protein CstA DKK66_09250 PF04328 Selenoprotein, putative DKK66_09255 PF03601 Conserved hypothetical protein 698 DKK66_09260 PF03466 LysR substrate binding domain DKK66_09260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_09265 PF01636 Phosphotransferase enzyme family DKK66_09275 PF03641 Possible lysine decarboxylase DKK66_09280 PF01612 3'-5' exonuclease DKK66_09280 PF00476 DNA polymerase family A DKK66_09280 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DKK66_09280 PF01367 5'-3' exonuclease, C-terminal SAM fold DKK66_09340 PF07690 Major Facilitator Superfamily DKK66_09345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKK66_09345 PF00529 HlyD membrane-fusion protein of T1SS DKK66_09350 PF02321 Outer membrane efflux protein DKK66_09355 PF01047 MarR family DKK66_09360 PF03960 ArsC family DKK66_09365 PF07690 Major Facilitator Superfamily DKK66_09370 PF10634 Fe2+ transport protein DKK66_09385 PF04205 FMN-binding domain DKK66_09385 PF12801 4Fe-4S binding domain DKK66_09395 PF03992 Antibiotic biosynthesis monooxygenase DKK66_09400 PF01794 Ferric reductase like transmembrane component DKK66_09405 PF00174 Oxidoreductase molybdopterin binding domain DKK66_09410 PF04055 Radical SAM superfamily DKK66_09410 PF16199 Radical_SAM C-terminal domain DKK66_09420 PF00561 alpha/beta hydrolase fold DKK66_09425 PF07021 Methionine biosynthesis protein MetW DKK66_09425 PF00561 alpha/beta hydrolase fold DKK66_09430 PF07690 Major Facilitator Superfamily DKK66_09435 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme DKK66_09440 PF07690 Major Facilitator Superfamily DKK66_09445 PF12833 Helix-turn-helix domain DKK66_09450 PF00733 Asparagine synthase DKK66_09450 PF13537 Glutamine amidotransferase domain DKK66_09455 PF03358 NADPH-dependent FMN reductase DKK66_09460 PF03631 Virulence factor BrkB DKK66_09470 PF17151 Periplasmic sensor domain DKK66_09470 PF00990 Diguanylate cyclase, GGDEF domain DKK66_09475 PF10414 Sirohaem synthase dimerisation region DKK66_09475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DKK66_09480 PF03830 PTS system sorbose subfamily IIB component DKK66_09480 PF03610 PTS system fructose IIA component DKK66_09485 PF00381 PTS HPr component phosphorylation site DKK66_09490 PF02896 PEP-utilising enzyme, TIM barrel domain DKK66_09490 PF05524 PEP-utilising enzyme, N-terminal DKK66_09490 PF00391 PEP-utilising enzyme, mobile domain DKK66_09495 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DKK66_09500 PF00534 Glycosyl transferases group 1 DKK66_09500 PF13439 Glycosyltransferase Family 4 DKK66_09510 PF13439 Glycosyltransferase Family 4 DKK66_09510 PF00534 Glycosyl transferases group 1 DKK66_09515 PF00664 ABC transporter transmembrane region DKK66_09515 PF00005 ABC transporter DKK66_09525 PF01761 3-dehydroquinate synthase DKK66_09530 PF01202 Shikimate kinase DKK66_09535 PF00263 Bacterial type II and III secretion system protein DKK66_09535 PF03958 Bacterial type II/III secretion system short domain DKK66_09535 PF07660 Secretin and TonB N terminus short domain DKK66_09535 PF11741 AMIN domain DKK66_09560 PF00905 Penicillin binding protein transpeptidase domain DKK66_09560 PF00912 Transglycosylase DKK66_09560 PF17092 Penicillin-binding protein OB-like domain DKK66_09565 PF13533 Biotin-lipoyl like DKK66_09570 PF00873 AcrB/AcrD/AcrF family DKK66_09575 PF00873 AcrB/AcrD/AcrF family DKK66_09580 PF02321 Outer membrane efflux protein DKK66_09585 PF02911 Formyl transferase, C-terminal domain DKK66_09585 PF00551 Formyl transferase DKK66_09590 PF02690 Na+/Pi-cotransporter DKK66_09595 PF01757 Acyltransferase family DKK66_09610 PF00348 Polyprenyl synthetase DKK66_09615 PF00829 Ribosomal prokaryotic L21 protein DKK66_09620 PF01016 Ribosomal L27 protein DKK66_09625 PF01018 GTP1/OBG DKK66_09625 PF01926 50S ribosome-binding GTPase DKK66_09630 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKK66_09635 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_09640 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_09645 PF00005 ABC transporter DKK66_09660 PF07690 Major Facilitator Superfamily DKK66_09675 PF02463 RecF/RecN/SMC N terminal domain DKK66_09675 PF06470 SMC proteins Flexible Hinge Domain DKK66_09685 PF00753 Metallo-beta-lactamase superfamily DKK66_09695 PF00155 Aminotransferase class I and II DKK66_09700 PF02627 Carboxymuconolactone decarboxylase family DKK66_09705 PF08534 Redoxin DKK66_09710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_09725 PF04717 Type VI secretion system, phage-baseplate injector DKK66_09725 PF16671 Actin cross-linking domain DKK66_09745 PF00132 Bacterial transferase hexapeptide (six repeats) DKK66_09750 PF01432 Peptidase family M3 DKK66_09760 PF00884 Sulfatase DKK66_09760 PF08019 Phosphoethanolamine transferase EptA/EptB DKK66_09765 PF03372 Endonuclease/Exonuclease/phosphatase family DKK66_09770 PF01209 ubiE/COQ5 methyltransferase family DKK66_09780 PF00175 Oxidoreductase NAD-binding domain DKK66_09780 PF00970 Oxidoreductase FAD-binding domain DKK66_09785 PF00180 Isocitrate/isopropylmalate dehydrogenase DKK66_09790 PF13439 Glycosyltransferase Family 4 DKK66_09790 PF00534 Glycosyl transferases group 1 DKK66_09800 PF00486 Transcriptional regulatory protein, C terminal DKK66_09800 PF00072 Response regulator receiver domain DKK66_09805 PF00512 His Kinase A (phospho-acceptor) domain DKK66_09805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_09805 PF08521 Two-component sensor kinase N-terminal DKK66_09820 PF00072 Response regulator receiver domain DKK66_09825 PF13193 AMP-binding enzyme C-terminal domain DKK66_09825 PF00501 AMP-binding enzyme DKK66_09830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_09830 PF00672 HAMP domain DKK66_09830 PF02743 Cache domain DKK66_09855 PF00474 Sodium:solute symporter family DKK66_09865 PF00171 Aldehyde dehydrogenase family DKK66_09870 PF00196 Bacterial regulatory proteins, luxR family DKK66_09870 PF03472 Autoinducer binding domain DKK66_09875 PF03466 LysR substrate binding domain DKK66_09875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_09900 PF17946 RecC C-terminal domain DKK66_09905 PF13361 UvrD-like helicase C-terminal domain DKK66_09905 PF00580 UvrD/REP helicase N-terminal domain DKK66_09905 PF12705 PD-(D/E)XK nuclease superfamily DKK66_09910 PF03976 Polyphosphate kinase 2 (PPK2) DKK66_09920 PF13538 UvrD-like helicase C-terminal domain DKK66_09935 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKK66_09935 PF00072 Response regulator receiver domain DKK66_09935 PF00989 PAS fold DKK66_09935 PF01627 Hpt domain DKK66_09935 PF00512 His Kinase A (phospho-acceptor) domain DKK66_09935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_09940 PF00210 Ferritin-like domain DKK66_09945 PF00210 Ferritin-like domain DKK66_09955 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DKK66_09955 PF11867 Domain of unknown function (DUF3387) DKK66_09955 PF18766 SWI2/SNF2 ATPase DKK66_09975 PF01420 Type I restriction modification DNA specificity domain DKK66_09980 PF12161 HsdM N-terminal domain DKK66_09980 PF02384 N-6 DNA Methylase DKK66_09995 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DKK66_10000 PF00580 UvrD/REP helicase N-terminal domain DKK66_10000 PF13361 UvrD-like helicase C-terminal domain DKK66_10005 PF00149 Calcineurin-like phosphoesterase DKK66_10010 PF01553 Acyltransferase DKK66_10015 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DKK66_10015 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DKK66_10015 PF06827 Zinc finger found in FPG and IleRS DKK66_10025 PF03550 Outer membrane lipoprotein LolB DKK66_10030 PF08544 GHMP kinases C terminal DKK66_10030 PF00288 GHMP kinases N terminal domain DKK66_10040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DKK66_10040 PF14572 Phosphoribosyl synthetase-associated domain DKK66_10045 PF01386 Ribosomal L25p family DKK66_10045 PF14693 Ribosomal protein TL5, C-terminal domain DKK66_10050 PF01195 Peptidyl-tRNA hydrolase DKK66_10055 PF01926 50S ribosome-binding GTPase DKK66_10055 PF06071 Protein of unknown function (DUF933) DKK66_10080 PF00501 AMP-binding enzyme DKK66_10085 PF01053 Cys/Met metabolism PLP-dependent enzyme DKK66_10090 PF00970 Oxidoreductase FAD-binding domain DKK66_10090 PF00175 Oxidoreductase NAD-binding domain DKK66_10095 PF01276 Orn/Lys/Arg decarboxylase, major domain DKK66_10095 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DKK66_10095 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DKK66_10105 PF13091 PLD-like domain DKK66_10105 PF13396 Phospholipase_D-nuclease N-terminal DKK66_10110 PF01493 GXGXG motif DKK66_10110 PF01645 Conserved region in glutamate synthase DKK66_10110 PF04898 Glutamate synthase central domain DKK66_10110 PF00310 Glutamine amidotransferases class-II DKK66_10120 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKK66_10120 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DKK66_10130 PF01040 UbiA prenyltransferase family DKK66_10135 PF04030 D-arabinono-1,4-lactone oxidase DKK66_10135 PF01565 FAD binding domain DKK66_10140 PF00106 short chain dehydrogenase DKK66_10150 PF16363 GDP-mannose 4,6 dehydratase DKK66_10155 PF01593 Flavin containing amine oxidoreductase DKK66_10175 PF00535 Glycosyl transferase family 2 DKK66_10185 PF00535 Glycosyl transferase family 2 DKK66_10195 PF01370 NAD dependent epimerase/dehydratase family DKK66_10200 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DKK66_10205 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DKK66_10210 PF16363 GDP-mannose 4,6 dehydratase DKK66_10215 PF00483 Nucleotidyl transferase DKK66_10220 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DKK66_10225 PF00483 Nucleotidyl transferase DKK66_10230 PF04321 RmlD substrate binding domain DKK66_10235 PF16363 GDP-mannose 4,6 dehydratase DKK66_10240 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DKK66_10240 PF00953 Glycosyl transferase family 4 DKK66_10245 PF00166 Chaperonin 10 Kd subunit DKK66_10250 PF00118 TCP-1/cpn60 chaperonin family DKK66_10255 PF01784 NIF3 (NGG1p interacting factor 3) DKK66_10260 PF00355 Rieske [2Fe-2S] domain DKK66_10260 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DKK66_10265 PF00033 Cytochrome b/b6/petB DKK66_10265 PF00032 Cytochrome b(C-terminal)/b6/petD DKK66_10270 PF02167 Cytochrome C1 family DKK66_10275 PF02798 Glutathione S-transferase, N-terminal domain DKK66_10275 PF00043 Glutathione S-transferase, C-terminal domain DKK66_10280 PF04386 Stringent starvation protein B DKK66_10285 PF17151 Periplasmic sensor domain DKK66_10285 PF00990 Diguanylate cyclase, GGDEF domain DKK66_10290 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DKK66_10290 PF05221 S-adenosyl-L-homocysteine hydrolase DKK66_10295 PF02219 Methylenetetrahydrofolate reductase DKK66_10300 PF00563 EAL domain DKK66_10300 PF01590 GAF domain DKK66_10300 PF00990 Diguanylate cyclase, GGDEF domain DKK66_10300 PF00360 Phytochrome region DKK66_10305 PF13407 Periplasmic binding protein domain DKK66_10310 PF01037 Lrp/AsnC ligand binding domain DKK66_10315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKK66_10320 PF04209 homogentisate 1,2-dioxygenase DKK66_10330 PF02798 Glutathione S-transferase, N-terminal domain DKK66_10330 PF14497 Glutathione S-transferase, C-terminal domain DKK66_10350 PF02378 Phosphotransferase system, EIIC DKK66_10350 PF00367 phosphotransferase system, EIIB DKK66_10355 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DKK66_10355 PF05524 PEP-utilising enzyme, N-terminal DKK66_10355 PF02896 PEP-utilising enzyme, TIM barrel domain DKK66_10355 PF00391 PEP-utilising enzyme, mobile domain DKK66_10355 PF00381 PTS HPr component phosphorylation site DKK66_10365 PF03466 LysR substrate binding domain DKK66_10365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_10370 PF00375 Sodium:dicarboxylate symporter family DKK66_10380 PF01914 MarC family integral membrane protein DKK66_10385 PF02926 THUMP domain DKK66_10385 PF01170 Putative RNA methylase family UPF0020 DKK66_10390 PF00633 Helix-hairpin-helix motif DKK66_10390 PF14815 NUDIX domain DKK66_10390 PF10576 Iron-sulfur binding domain of endonuclease III DKK66_10390 PF00730 HhH-GPD superfamily base excision DNA repair protein DKK66_10395 PF02824 TGS domain DKK66_10395 PF04607 Region found in RelA / SpoT proteins DKK66_10395 PF13291 ACT domain DKK66_10405 PF01791 DeoC/LacD family aldolase DKK66_10410 PF02885 Glycosyl transferase family, helical bundle domain DKK66_10410 PF00591 Glycosyl transferase family, a/b domain DKK66_10410 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DKK66_10415 PF01676 Metalloenzyme superfamily DKK66_10420 PF01048 Phosphorylase superfamily DKK66_10425 PF00572 Ribosomal protein L13 DKK66_10430 PF00380 Ribosomal protein S9/S16 DKK66_10435 PF02743 Cache domain DKK66_10435 PF00672 HAMP domain DKK66_10435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_10440 PF02774 Semialdehyde dehydrogenase, dimerisation domain DKK66_10440 PF01118 Semialdehyde dehydrogenase, NAD binding domain DKK66_10445 PF01521 Iron-sulphur cluster biosynthesis DKK66_10450 PF03705 CheR methyltransferase, all-alpha domain DKK66_10450 PF01739 CheR methyltransferase, SAM binding domain DKK66_10455 PF01266 FAD dependent oxidoreductase DKK66_10460 PF02222 ATP-grasp domain DKK66_10460 PF01370 NAD dependent epimerase/dehydratase family DKK66_10475 PF02152 Dihydroneopterin aldolase DKK66_10480 PF02660 Glycerol-3-phosphate acyltransferase DKK66_10485 PF00850 Histone deacetylase domain DKK66_10490 PF07726 ATPase family associated with various cellular activities (AAA) DKK66_10490 PF17863 AAA lid domain DKK66_10500 PF01841 Transglutaminase-like superfamily DKK66_10500 PF13559 Domain of unknown function (DUF4129) DKK66_10500 PF11992 Domain of unknown function (DUF3488) DKK66_10505 PF00140 Sigma-70 factor, region 1.2 DKK66_10505 PF04542 Sigma-70 region 2 DKK66_10505 PF04539 Sigma-70 region 3 DKK66_10505 PF04545 Sigma-70, region 4 DKK66_10510 PF01476 LysM domain DKK66_10510 PF01551 Peptidase family M23 DKK66_10520 PF01975 Survival protein SurE DKK66_10525 PF02445 Quinolinate synthetase A protein DKK66_10530 PF00583 Acetyltransferase (GNAT) family DKK66_10530 PF13380 CoA binding domain DKK66_10530 PF13607 Succinyl-CoA ligase like flavodoxin domain DKK66_10535 PF00886 Ribosomal protein S16 DKK66_10540 PF01782 RimM N-terminal domain DKK66_10540 PF05239 PRC-barrel domain DKK66_10545 PF01746 tRNA (Guanine-1)-methyltransferase DKK66_10550 PF01245 Ribosomal protein L19 DKK66_10555 PF00589 Phage integrase family DKK66_10555 PF02899 Phage integrase, N-terminal SAM-like domain DKK66_10560 PF17871 AAA lid domain DKK66_10560 PF07724 AAA domain (Cdc48 subfamily) DKK66_10560 PF10431 C-terminal, D2-small domain, of ClpB protein DKK66_10560 PF00004 ATPase family associated with various cellular activities (AAA) DKK66_10560 PF02861 Clp amino terminal domain, pathogenicity island component DKK66_10565 PF02617 ATP-dependent Clp protease adaptor protein ClpS DKK66_10570 PF00313 'Cold-shock' DNA-binding domain DKK66_10575 PF07690 Major Facilitator Superfamily DKK66_10585 PF00180 Isocitrate/isopropylmalate dehydrogenase DKK66_10590 PF03971 Monomeric isocitrate dehydrogenase DKK66_10595 PF00849 RNA pseudouridylate synthase DKK66_10600 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) DKK66_10615 PF00488 MutS domain V DKK66_10615 PF01624 MutS domain I DKK66_10615 PF05188 MutS domain II DKK66_10615 PF05192 MutS domain III DKK66_10615 PF05190 MutS family domain IV DKK66_10625 PF01654 Cytochrome bd terminal oxidase subunit I DKK66_10630 PF02322 Cytochrome bd terminal oxidase subunit II DKK66_10635 PF03009 Glycerophosphoryl diester phosphodiesterase family DKK66_10640 PF04193 PQ loop repeat DKK66_10655 PF07690 Major Facilitator Superfamily DKK66_10660 PF00459 Inositol monophosphatase family DKK66_10665 PF00588 SpoU rRNA Methylase family DKK66_10680 PF00027 Cyclic nucleotide-binding domain DKK66_10680 PF00325 Bacterial regulatory proteins, crp family DKK66_10685 PF04055 Radical SAM superfamily DKK66_10685 PF06969 HemN C-terminal domain DKK66_10690 PF02082 Transcriptional regulator DKK66_10695 PF00970 Oxidoreductase FAD-binding domain DKK66_10695 PF00042 Globin DKK66_10695 PF00175 Oxidoreductase NAD-binding domain DKK66_10700 PF00672 HAMP domain DKK66_10700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_10710 PF00732 GMC oxidoreductase DKK66_10710 PF05199 GMC oxidoreductase DKK66_10715 PF00171 Aldehyde dehydrogenase family DKK66_10735 PF03551 Transcriptional regulator PadR-like family DKK66_10735 PF13847 Methyltransferase domain DKK66_10755 PF00551 Formyl transferase DKK66_10760 PF01266 FAD dependent oxidoreductase DKK66_10770 PF08669 Glycine cleavage T-protein C-terminal barrel domain DKK66_10770 PF01571 Aminomethyltransferase folate-binding domain DKK66_10770 PF17806 Sarcosine oxidase A3 domain DKK66_10770 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKK66_10780 PF08946 Osmosensory transporter coiled coil DKK66_10780 PF00083 Sugar (and other) transporter DKK66_10790 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DKK66_10805 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKK66_10810 PF02754 Cysteine-rich domain DKK66_10810 PF13183 4Fe-4S dicluster domain DKK66_10810 PF02665 Nitrate reductase gamma subunit DKK66_10815 PF01012 Electron transfer flavoprotein domain DKK66_10815 PF00766 Electron transfer flavoprotein FAD-binding domain DKK66_10825 PF00355 Rieske [2Fe-2S] domain DKK66_10825 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DKK66_10830 PF00175 Oxidoreductase NAD-binding domain DKK66_10830 PF00970 Oxidoreductase FAD-binding domain DKK66_10830 PF00111 2Fe-2S iron-sulfur cluster binding domain DKK66_10835 PF00571 CBS domain DKK66_10835 PF00005 ABC transporter DKK66_10840 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_10845 PF01965 DJ-1/PfpI family DKK66_10845 PF12833 Helix-turn-helix domain DKK66_10850 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DKK66_10870 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DKK66_10870 PF08240 Alcohol dehydrogenase GroES-like domain DKK66_10880 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DKK66_10880 PF00037 4Fe-4S binding domain DKK66_10880 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DKK66_10885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DKK66_10885 PF12838 4Fe-4S dicluster domain DKK66_10885 PF00384 Molybdopterin oxidoreductase DKK66_10885 PF01568 Molydopterin dinucleotide binding domain DKK66_10885 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DKK66_10920 PF00294 pfkB family carbohydrate kinase DKK66_10925 PF01042 Endoribonuclease L-PSP DKK66_10930 PF07969 Amidohydrolase family DKK66_10935 PF02447 GntP family permease DKK66_10945 PF00485 Phosphoribulokinase / Uridine kinase family DKK66_10950 PF02798 Glutathione S-transferase, N-terminal domain DKK66_10950 PF14497 Glutathione S-transferase, C-terminal domain DKK66_10955 PF04384 Iron-sulphur cluster assembly DKK66_10960 PF00111 2Fe-2S iron-sulfur cluster binding domain DKK66_10965 PF00012 Hsp70 protein DKK66_10970 PF07743 HSCB C-terminal oligomerisation domain DKK66_10975 PF01521 Iron-sulphur cluster biosynthesis DKK66_10980 PF01592 NifU-like N terminal domain DKK66_10985 PF00266 Aminotransferase class-V DKK66_10990 PF02082 Transcriptional regulator DKK66_10995 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DKK66_10995 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DKK66_11000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DKK66_11005 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_11010 PF12911 N-terminal TM domain of oligopeptide transport permease C DKK66_11010 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_11015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DKK66_11015 PF00005 ABC transporter DKK66_11020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DKK66_11020 PF00005 ABC transporter DKK66_11025 PF01467 Cytidylyltransferase-like DKK66_11030 PF10672 S-adenosylmethionine-dependent methyltransferase DKK66_11040 PF00085 Thioredoxin DKK66_11070 PF13091 PLD-like domain DKK66_11075 PF01266 FAD dependent oxidoreductase DKK66_11080 PF00120 Glutamine synthetase, catalytic domain DKK66_11085 PF00293 NUDIX domain DKK66_11090 PF00204 DNA gyrase B DKK66_11090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_11090 PF01751 Toprim domain DKK66_11090 PF00986 DNA gyrase B subunit, carboxyl terminus DKK66_11095 PF01411 tRNA synthetases class II (A) DKK66_11095 PF02272 DHHA1 domain DKK66_11095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DKK66_11100 PF00849 RNA pseudouridylate synthase DKK66_11105 PF14489 QueF-like protein DKK66_11105 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DKK66_11110 PF03023 Lipid II flippase MurJ DKK66_11115 PF01649 Ribosomal protein S20 DKK66_11120 PF00871 Acetokinase family DKK66_11125 PF01515 Phosphate acetyl/butaryl transferase DKK66_11145 PF00152 tRNA synthetases class II (D, K and N) DKK66_11145 PF01336 OB-fold nucleic acid binding domain DKK66_11145 PF02938 GAD domain DKK66_11150 PF00578 AhpC/TSA family DKK66_11150 PF10417 C-terminal domain of 1-Cys peroxiredoxin DKK66_11155 PF00990 Diguanylate cyclase, GGDEF domain DKK66_11160 PF00990 Diguanylate cyclase, GGDEF domain DKK66_11165 PF13472 GDSL-like Lipase/Acylhydrolase family DKK66_11170 PF00005 ABC transporter DKK66_11185 PF07690 Major Facilitator Superfamily DKK66_11190 PF07729 FCD domain DKK66_11190 PF00392 Bacterial regulatory proteins, gntR family DKK66_11200 PF00398 Ribosomal RNA adenine dimethylase DKK66_11205 PF02618 YceG-like family DKK66_11210 PF02223 Thymidylate kinase DKK66_11215 PF09115 DNA polymerase III, delta subunit, C terminal DKK66_11225 PF01026 TatD related DNase DKK66_11230 PF12706 Beta-lactamase superfamily domain DKK66_11230 PF03099 Biotin/lipoate A/B protein ligase family DKK66_11240 PF00698 Acyl transferase domain DKK66_11240 PF00109 Beta-ketoacyl synthase, N-terminal domain DKK66_11240 PF08990 Erythronolide synthase docking DKK66_11240 PF02801 Beta-ketoacyl synthase, C-terminal domain DKK66_11240 PF00550 Phosphopantetheine attachment site DKK66_11240 PF16197 Ketoacyl-synthetase C-terminal extension DKK66_11240 PF14765 Polyketide synthase dehydratase DKK66_11240 PF08240 Alcohol dehydrogenase GroES-like domain DKK66_11240 PF08659 KR domain DKK66_11240 PF09277 Erythronolide synthase, docking DKK66_11245 PF00155 Aminotransferase class I and II DKK66_11250 PF02563 Polysaccharide biosynthesis/export protein DKK66_11255 PF01061 ABC-2 type transporter DKK66_11260 PF00005 ABC transporter DKK66_11280 PF02350 UDP-N-acetylglucosamine 2-epimerase DKK66_11285 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DKK66_11285 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DKK66_11285 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DKK66_11295 PF00535 Glycosyl transferase family 2 DKK66_11335 PF00106 short chain dehydrogenase DKK66_11340 PF00884 Sulfatase DKK66_11350 PF05981 CreA protein DKK66_11360 PF00579 tRNA synthetases class I (W and Y) DKK66_11365 PF03618 Kinase/pyrophosphorylase DKK66_11370 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DKK66_11370 PF00391 PEP-utilising enzyme, mobile domain DKK66_11370 PF02896 PEP-utilising enzyme, TIM barrel domain DKK66_11375 PF02321 Outer membrane efflux protein DKK66_11380 PF13533 Biotin-lipoyl like DKK66_11385 PF00005 ABC transporter DKK66_11385 PF00664 ABC transporter transmembrane region DKK66_11385 PF03412 Peptidase C39 family DKK66_11390 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DKK66_11390 PF03497 Anthrax toxin LF subunit DKK66_11390 PF06594 Haemolysin-type calcium binding protein related domain DKK66_11390 PF02382 N-terminal domain in RTX protein DKK66_11405 PF01494 FAD binding domain DKK66_11410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_11410 PF03466 LysR substrate binding domain DKK66_11425 PF00484 Carbonic anhydrase DKK66_11430 PF00171 Aldehyde dehydrogenase family DKK66_11430 PF00465 Iron-containing alcohol dehydrogenase DKK66_11445 PF17757 UvrB interaction domain DKK66_11445 PF02559 CarD-like/TRCF domain DKK66_11445 PF00270 DEAD/DEAH box helicase DKK66_11445 PF03461 TRCF domain DKK66_11445 PF00271 Helicase conserved C-terminal domain DKK66_11450 PF00990 Diguanylate cyclase, GGDEF domain DKK66_11450 PF03707 Bacterial signalling protein N terminal repeat DKK66_11450 PF00563 EAL domain DKK66_11455 PF08032 RNA 2'-O ribose methyltransferase substrate binding DKK66_11455 PF00588 SpoU rRNA Methylase family DKK66_11460 PF07731 Multicopper oxidase DKK66_11460 PF07732 Multicopper oxidase DKK66_11465 PF02583 Metal-sensitive transcriptional repressor DKK66_11475 PF01250 Ribosomal protein S6 DKK66_11485 PF01084 Ribosomal protein S18 DKK66_11490 PF01281 Ribosomal protein L9, N-terminal domain DKK66_11490 PF03948 Ribosomal protein L9, C-terminal domain DKK66_11500 PF01266 FAD dependent oxidoreductase DKK66_11520 PF00857 Isochorismatase family DKK66_11525 PF01565 FAD binding domain DKK66_11525 PF02913 FAD linked oxidases, C-terminal domain DKK66_11525 PF13183 4Fe-4S dicluster domain DKK66_11530 PF13673 Acetyltransferase (GNAT) domain DKK66_11530 PF00583 Acetyltransferase (GNAT) family DKK66_11535 PF00583 Acetyltransferase (GNAT) family DKK66_11540 PF00860 Permease family DKK66_11555 PF00498 FHA domain DKK66_11555 PF00563 EAL domain DKK66_11555 PF00990 Diguanylate cyclase, GGDEF domain DKK66_11560 PF00462 Glutaredoxin DKK66_11565 PF00654 Voltage gated chloride channel DKK66_11570 PF01189 16S rRNA methyltransferase RsmB/F DKK66_11570 PF01029 NusB family DKK66_11580 PF00551 Formyl transferase DKK66_11585 PF00586 AIR synthase related protein, N-terminal domain DKK66_11585 PF02769 AIR synthase related protein, C-terminal domain DKK66_11590 PF00308 Bacterial dnaA protein DKK66_11605 PF00892 EamA-like transporter family DKK66_11610 PF00293 NUDIX domain DKK66_11620 PF01040 UbiA prenyltransferase family DKK66_11625 PF04345 Chorismate lyase DKK66_11635 PF04172 LrgB-like family DKK66_11645 PF08267 Cobalamin-independent synthase, N-terminal domain DKK66_11645 PF01717 Cobalamin-independent synthase, Catalytic domain DKK66_11650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_11650 PF03466 LysR substrate binding domain DKK66_11655 PF00158 Sigma-54 interaction domain DKK66_11655 PF02954 Bacterial regulatory protein, Fis family DKK66_11655 PF00072 Response regulator receiver domain DKK66_11660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_11660 PF00512 His Kinase A (phospho-acceptor) domain DKK66_11660 PF00989 PAS fold DKK66_11685 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DKK66_11685 PF08501 Shikimate dehydrogenase substrate binding domain DKK66_11685 PF01488 Shikimate / quinate 5-dehydrogenase DKK66_11690 PF00912 Transglycosylase DKK66_11695 PF03448 MgtE intracellular N domain DKK66_11695 PF00571 CBS domain DKK66_11695 PF01769 Divalent cation transporter DKK66_11700 PF17827 PrmC N-terminal domain DKK66_11700 PF05175 Methyltransferase small domain DKK66_11710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKK66_11715 PF08007 Cupin superfamily protein DKK66_11725 PF06804 NlpB/DapX lipoprotein DKK66_11730 PF00701 Dihydrodipicolinate synthetase family DKK66_11735 PF00005 ABC transporter DKK66_11735 PF12848 ABC transporter DKK66_11745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_11745 PF03466 LysR substrate binding domain DKK66_11750 PF01507 Phosphoadenosine phosphosulfate reductase family DKK66_11765 PF00691 OmpA family DKK66_11770 PF06574 FAD synthetase DKK66_11770 PF01687 Riboflavin kinase DKK66_11775 PF08264 Anticodon-binding domain of tRNA DKK66_11775 PF00133 tRNA synthetases class I (I, L, M and V) DKK66_11775 PF06827 Zinc finger found in FPG and IleRS DKK66_11780 PF01252 Signal peptidase (SPase) II DKK66_11785 PF02401 LytB protein DKK66_11790 PF09339 IclR helix-turn-helix domain DKK66_11790 PF01614 Bacterial transcriptional regulator DKK66_11795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DKK66_11795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DKK66_11795 PF00205 Thiamine pyrophosphate enzyme, central domain DKK66_11800 PF01261 Xylose isomerase-like TIM barrel DKK66_11805 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKK66_11805 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKK66_11815 PF00576 HIUase/Transthyretin family DKK66_11825 PF01014 Uricase DKK66_11825 PF09349 OHCU decarboxylase DKK66_11830 PF01810 LysE type translocator DKK66_11835 PF03561 Allantoicase repeat DKK66_11840 PF04115 Ureidoglycolate lyase DKK66_11845 PF00860 Permease family DKK66_11855 PF00183 Hsp90 protein DKK66_11855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_11860 PF13417 Glutathione S-transferase, N-terminal domain DKK66_11870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_11870 PF03466 LysR substrate binding domain DKK66_11875 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DKK66_11880 PF13417 Glutathione S-transferase, N-terminal domain DKK66_11880 PF00043 Glutathione S-transferase, C-terminal domain DKK66_11905 PF01274 Malate synthase DKK66_11910 PF03466 LysR substrate binding domain DKK66_11910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_11915 PF13520 Amino acid permease DKK66_11920 PF03358 NADPH-dependent FMN reductase DKK66_11925 PF00463 Isocitrate lyase family DKK66_11930 PF01025 GrpE DKK66_11935 PF00012 Hsp70 protein DKK66_11940 PF00684 DnaJ central domain DKK66_11940 PF01556 DnaJ C terminal domain DKK66_11940 PF00226 DnaJ domain DKK66_11945 PF00267 Gram-negative porin DKK66_11950 PF00490 Delta-aminolevulinic acid dehydratase DKK66_11960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_11960 PF03466 LysR substrate binding domain DKK66_11965 PF02028 BCCT, betaine/carnitine/choline family transporter DKK66_11970 PF07859 alpha/beta hydrolase fold DKK66_11975 PF00355 Rieske [2Fe-2S] domain DKK66_11975 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DKK66_11980 PF00970 Oxidoreductase FAD-binding domain DKK66_11980 PF00175 Oxidoreductase NAD-binding domain DKK66_11980 PF00111 2Fe-2S iron-sulfur cluster binding domain DKK66_11985 PF00155 Aminotransferase class I and II DKK66_11990 PF08240 Alcohol dehydrogenase GroES-like domain DKK66_11990 PF00107 Zinc-binding dehydrogenase DKK66_12000 PF02091 Glycyl-tRNA synthetase alpha subunit DKK66_12010 PF05746 DALR anticodon binding domain DKK66_12010 PF02092 Glycyl-tRNA synthetase beta subunit DKK66_12030 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKK66_12040 PF02230 Phospholipase/Carboxylesterase DKK66_12045 PF08245 Mur ligase middle domain DKK66_12045 PF02875 Mur ligase family, glutamate ligase domain DKK66_12045 PF01225 Mur ligase family, catalytic domain DKK66_12075 PF05114 Protein of unknown function (DUF692) DKK66_12095 PF01242 6-pyruvoyl tetrahydropterin synthase DKK66_12100 PF06508 Queuosine biosynthesis protein QueC DKK66_12105 PF00781 Diacylglycerol kinase catalytic domain DKK66_12115 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKK66_12120 PF00881 Nitroreductase family DKK66_12125 PF00440 Bacterial regulatory proteins, tetR family DKK66_12125 PF16925 Tetracyclin repressor-like, C-terminal domain DKK66_12150 PF05567 Neisseria PilC beta-propeller domain DKK66_12155 PF07963 Prokaryotic N-terminal methylation motif DKK66_12155 PF00114 Pilin (bacterial filament) DKK66_12160 PF00465 Iron-containing alcohol dehydrogenase DKK66_12165 PF00202 Aminotransferase class-III DKK66_12170 PF00324 Amino acid permease DKK66_12175 PF13488 Glycine zipper DKK66_12175 PF00691 OmpA family DKK66_12180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_12180 PF03466 LysR substrate binding domain DKK66_12185 PF01266 FAD dependent oxidoreductase DKK66_12200 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DKK66_12200 PF01627 Hpt domain DKK66_12200 PF00072 Response regulator receiver domain DKK66_12200 PF00512 His Kinase A (phospho-acceptor) domain DKK66_12200 PF00672 HAMP domain DKK66_12200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_12210 PF08753 NikR C terminal nickel binding domain DKK66_12210 PF01402 Ribbon-helix-helix protein, copG family DKK66_12215 PF00005 ABC transporter DKK66_12220 PF02361 Cobalt transport protein DKK66_12225 PF01891 Cobalt uptake substrate-specific transmembrane region DKK66_12225 PF13190 PDGLE domain DKK66_12240 PF00550 Phosphopantetheine attachment site DKK66_12250 PF00501 AMP-binding enzyme DKK66_12250 PF13193 AMP-binding enzyme C-terminal domain DKK66_12255 PF07977 FabA-like domain DKK66_12280 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain DKK66_12280 PF01522 Polysaccharide deacetylase DKK66_12285 PF02801 Beta-ketoacyl synthase, C-terminal domain DKK66_12285 PF00109 Beta-ketoacyl synthase, N-terminal domain DKK66_12305 PF07977 FabA-like domain DKK66_12310 PF00109 Beta-ketoacyl synthase, N-terminal domain DKK66_12310 PF02801 Beta-ketoacyl synthase, C-terminal domain DKK66_12315 PF00550 Phosphopantetheine attachment site DKK66_12330 PF10119 Predicted methyltransferase regulatory domain DKK66_12330 PF13847 Methyltransferase domain DKK66_12335 PF00881 Nitroreductase family DKK66_12340 PF00563 EAL domain DKK66_12340 PF03707 Bacterial signalling protein N terminal repeat DKK66_12340 PF00990 Diguanylate cyclase, GGDEF domain DKK66_12345 PF00962 Adenosine/AMP deaminase DKK66_12350 PF03060 Nitronate monooxygenase DKK66_12355 PF00563 EAL domain DKK66_12355 PF00990 Diguanylate cyclase, GGDEF domain DKK66_12355 PF03707 Bacterial signalling protein N terminal repeat DKK66_12360 PF00990 Diguanylate cyclase, GGDEF domain DKK66_12360 PF00563 EAL domain DKK66_12360 PF03707 Bacterial signalling protein N terminal repeat DKK66_12365 PF00909 Ammonium Transporter Family DKK66_12370 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKK66_12375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_12375 PF03466 LysR substrate binding domain DKK66_12385 PF03707 Bacterial signalling protein N terminal repeat DKK66_12385 PF00990 Diguanylate cyclase, GGDEF domain DKK66_12385 PF00563 EAL domain DKK66_12395 PF05681 Fumarate hydratase (Fumerase) DKK66_12395 PF05683 Fumarase C-terminus DKK66_12400 PF00857 Isochorismatase family DKK66_12405 PF01965 DJ-1/PfpI family DKK66_12410 PF03466 LysR substrate binding domain DKK66_12410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_12415 PF00990 Diguanylate cyclase, GGDEF domain DKK66_12415 PF01590 GAF domain DKK66_12415 PF00563 EAL domain DKK66_12415 PF00360 Phytochrome region DKK66_12430 PF00486 Transcriptional regulatory protein, C terminal DKK66_12430 PF00072 Response regulator receiver domain DKK66_12435 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DKK66_12455 PF14437 MafB19-like deaminase DKK66_12480 PF00535 Glycosyl transferase family 2 DKK66_12490 PF02540 NAD synthase DKK66_12490 PF00958 GMP synthase C terminal domain DKK66_12490 PF00117 Glutamine amidotransferase class-I DKK66_12500 PF01668 SmpB protein DKK66_12505 PF03364 Polyketide cyclase / dehydrase and lipid transport DKK66_12510 PF03658 RnfH family Ubiquitin DKK66_12515 PF00990 Diguanylate cyclase, GGDEF domain DKK66_12520 PF04977 Septum formation initiator DKK66_12525 PF00113 Enolase, C-terminal TIM barrel domain DKK66_12525 PF03952 Enolase, N-terminal domain DKK66_12530 PF00793 DAHP synthetase I family DKK66_12535 PF00117 Glutamine amidotransferase class-I DKK66_12535 PF06418 CTP synthase N-terminus DKK66_12540 PF00830 Ribosomal L28 family DKK66_12545 PF00471 Ribosomal protein L33 DKK66_12550 PF00117 Glutamine amidotransferase class-I DKK66_12550 PF00958 GMP synthase C terminal domain DKK66_12555 PF03167 Uracil DNA glycosylase superfamily DKK66_12560 PF00583 Acetyltransferase (GNAT) family DKK66_12565 PF00814 Glycoprotease family DKK66_12570 PF08668 HDOD domain DKK66_12570 PF00563 EAL domain DKK66_12575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_12575 PF07194 P2 response regulator binding domain DKK66_12575 PF01627 Hpt domain DKK66_12575 PF02895 Signal transducing histidine kinase, homodimeric domain DKK66_12575 PF01584 CheW-like domain DKK66_12580 PF04344 Chemotaxis phosphatase, CheZ DKK66_12585 PF00072 Response regulator receiver domain DKK66_12590 PF01584 CheW-like domain DKK66_12590 PF00072 Response regulator receiver domain DKK66_12595 PF01584 CheW-like domain DKK66_12595 PF00072 Response regulator receiver domain DKK66_12600 PF00989 PAS fold DKK66_12600 PF00512 His Kinase A (phospho-acceptor) domain DKK66_12600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_12605 PF13466 STAS domain DKK66_12610 PF02743 Cache domain DKK66_12610 PF00672 HAMP domain DKK66_12610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_12615 PF00072 Response regulator receiver domain DKK66_12620 PF01627 Hpt domain DKK66_12620 PF09078 CheY binding DKK66_12620 PF02895 Signal transducing histidine kinase, homodimeric domain DKK66_12620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_12620 PF01584 CheW-like domain DKK66_12625 PF01584 CheW-like domain DKK66_12630 PF00672 HAMP domain DKK66_12630 PF02203 Tar ligand binding domain homologue DKK66_12630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_12635 PF01739 CheR methyltransferase, SAM binding domain DKK66_12635 PF03705 CheR methyltransferase, all-alpha domain DKK66_12640 PF01339 CheB methylesterase DKK66_12640 PF00072 Response regulator receiver domain DKK66_12645 PF03975 CheD chemotactic sensory transduction DKK66_12650 PF11953 Domain of unknown function (DUF3470) DKK66_12650 PF00037 4Fe-4S binding domain DKK66_12655 PF00749 tRNA synthetases class I (E and Q), catalytic domain DKK66_12660 PF13520 Amino acid permease DKK66_12670 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DKK66_12670 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DKK66_12675 PF00696 Amino acid kinase family DKK66_12680 PF08669 Glycine cleavage T-protein C-terminal barrel domain DKK66_12680 PF01571 Aminomethyltransferase folate-binding domain DKK66_12685 PF01597 Glycine cleavage H-protein DKK66_12695 PF02347 Glycine cleavage system P-protein DKK66_12700 PF00990 Diguanylate cyclase, GGDEF domain DKK66_12700 PF00563 EAL domain DKK66_12700 PF03707 Bacterial signalling protein N terminal repeat DKK66_12705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DKK66_12715 PF01053 Cys/Met metabolism PLP-dependent enzyme DKK66_12730 PF04011 LemA family DKK66_12740 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DKK66_12740 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DKK66_12745 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DKK66_12750 PF02545 Maf-like protein DKK66_12755 PF02620 Large ribosomal RNA subunit accumulation protein YceD DKK66_12760 PF01783 Ribosomal L32p protein family DKK66_12765 PF02504 Fatty acid synthesis protein DKK66_12770 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DKK66_12770 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DKK66_12775 PF00698 Acyl transferase domain DKK66_12785 PF00550 Phosphopantetheine attachment site DKK66_12790 PF00109 Beta-ketoacyl synthase, N-terminal domain DKK66_12790 PF02801 Beta-ketoacyl synthase, C-terminal domain DKK66_12795 PF00425 chorismate binding enzyme DKK66_12795 PF04715 Anthranilate synthase component I, N terminal region DKK66_12800 PF01063 Amino-transferase class IV DKK66_12805 PF05231 MASE1 DKK66_12805 PF00563 EAL domain DKK66_12815 PF02153 Prephenate dehydrogenase DKK66_12860 PF13091 PLD-like domain DKK66_12860 PF13396 Phospholipase_D-nuclease N-terminal DKK66_12870 PF16671 Actin cross-linking domain DKK66_12870 PF04717 Type VI secretion system, phage-baseplate injector DKK66_12880 PF13505 Outer membrane protein beta-barrel domain DKK66_12880 PF00691 OmpA family DKK66_12930 PF01266 FAD dependent oxidoreductase DKK66_12940 PF01253 Translation initiation factor SUI1 DKK66_12955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DKK66_12960 PF00294 pfkB family carbohydrate kinase DKK66_12965 PF05524 PEP-utilising enzyme, N-terminal DKK66_12965 PF02896 PEP-utilising enzyme, TIM barrel domain DKK66_12965 PF00381 PTS HPr component phosphorylation site DKK66_12965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DKK66_12965 PF00391 PEP-utilising enzyme, mobile domain DKK66_12970 PF00356 Bacterial regulatory proteins, lacI family DKK66_12975 PF03466 LysR substrate binding domain DKK66_12975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_12980 PF07690 Major Facilitator Superfamily DKK66_12985 PF01292 Prokaryotic cytochrome b561 DKK66_12995 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DKK66_13000 PF02224 Cytidylate kinase DKK66_13005 PF00575 S1 RNA binding domain DKK66_13010 PF00216 Bacterial DNA-binding protein DKK66_13020 PF18073 Rubredoxin metal binding domain DKK66_13025 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DKK66_13030 PF00294 pfkB family carbohydrate kinase DKK66_13030 PF01467 Cytidylyltransferase-like DKK66_13035 PF01370 NAD dependent epimerase/dehydratase family DKK66_13040 PF00291 Pyridoxal-phosphate dependent enzyme DKK66_13055 PF06314 Acetoacetate decarboxylase (ADC) DKK66_13060 PF03969 AFG1-like ATPase DKK66_13070 PF09285 Elongation factor P, C-terminal DKK66_13070 PF01132 Elongation factor P (EF-P) OB domain DKK66_13070 PF08207 Elongation factor P (EF-P) KOW-like domain DKK66_13085 PF02867 Ribonucleotide reductase, barrel domain DKK66_13085 PF03477 ATP cone domain DKK66_13085 PF00317 Ribonucleotide reductase, all-alpha domain DKK66_13095 PF00392 Bacterial regulatory proteins, gntR family DKK66_13095 PF07729 FCD domain DKK66_13100 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_13115 PF00005 ABC transporter DKK66_13115 PF17912 MalK OB fold domain DKK66_13120 PF13378 Enolase C-terminal domain-like DKK66_13120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DKK66_13130 PF00072 Response regulator receiver domain DKK66_13130 PF00196 Bacterial regulatory proteins, luxR family DKK66_13135 PF00563 EAL domain DKK66_13135 PF03707 Bacterial signalling protein N terminal repeat DKK66_13135 PF00990 Diguanylate cyclase, GGDEF domain DKK66_13140 PF07690 Major Facilitator Superfamily DKK66_13155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKK66_13200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DKK66_13200 PF10414 Sirohaem synthase dimerisation region DKK66_13205 PF00034 Cytochrome c DKK66_13210 PF00115 Cytochrome C and Quinol oxidase polypeptide I DKK66_13215 PF00510 Cytochrome c oxidase subunit III DKK66_13225 PF07728 AAA domain (dynein-related subfamily) DKK66_13225 PF08406 CbbQ/NirQ/NorQ C-terminal DKK66_13250 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DKK66_13255 PF00034 Cytochrome c DKK66_13260 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DKK66_13275 PF17805 AsnC-like ligand binding domain DKK66_13280 PF13186 Iron-sulfur cluster-binding domain DKK66_13280 PF04055 Radical SAM superfamily DKK66_13290 PF00027 Cyclic nucleotide-binding domain DKK66_13290 PF13545 Crp-like helix-turn-helix domain DKK66_13295 PF07715 TonB-dependent Receptor Plug Domain DKK66_13295 PF00593 TonB dependent receptor DKK66_13300 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DKK66_13315 PF06276 Ferric iron reductase FhuF-like transporter DKK66_13315 PF04183 IucA / IucC family DKK66_13325 PF00005 ABC transporter DKK66_13330 PF01032 FecCD transport family DKK66_13335 PF01497 Periplasmic binding protein DKK66_13340 PF06463 Molybdenum Cofactor Synthesis C DKK66_13340 PF04055 Radical SAM superfamily DKK66_13345 PF00990 Diguanylate cyclase, GGDEF domain DKK66_13345 PF08448 PAS fold DKK66_13350 PF00196 Bacterial regulatory proteins, luxR family DKK66_13350 PF00072 Response regulator receiver domain DKK66_13355 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DKK66_13355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_13355 PF00672 HAMP domain DKK66_13355 PF07730 Histidine kinase DKK66_13360 PF07690 Major Facilitator Superfamily DKK66_13365 PF07690 Major Facilitator Superfamily DKK66_13370 PF08447 PAS fold DKK66_13370 PF13426 PAS domain DKK66_13370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_13380 PF14710 Respiratory nitrate reductase alpha N-terminal DKK66_13380 PF01568 Molydopterin dinucleotide binding domain DKK66_13380 PF00384 Molybdopterin oxidoreductase DKK66_13385 PF14711 Respiratory nitrate reductase beta C-terminal DKK66_13385 PF13247 4Fe-4S dicluster domain DKK66_13390 PF02613 Nitrate reductase delta subunit DKK66_13395 PF02665 Nitrate reductase gamma subunit DKK66_13400 PF00990 Diguanylate cyclase, GGDEF domain DKK66_13400 PF17151 Periplasmic sensor domain DKK66_13405 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain DKK66_13405 PF00730 HhH-GPD superfamily base excision DNA repair protein DKK66_13410 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKK66_13410 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DKK66_13415 PF13396 Phospholipase_D-nuclease N-terminal DKK66_13415 PF13091 PLD-like domain DKK66_13420 PF17655 Inward rectifier potassium channel C-terminal domain DKK66_13420 PF07885 Ion channel DKK66_13425 PF05661 Protein of unknown function (DUF808) DKK66_13435 PF00351 Biopterin-dependent aromatic amino acid hydroxylase DKK66_13440 PF00072 Response regulator receiver domain DKK66_13440 PF00990 Diguanylate cyclase, GGDEF domain DKK66_13445 PF00072 Response regulator receiver domain DKK66_13450 PF00072 Response regulator receiver domain DKK66_13450 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DKK66_13450 PF00512 His Kinase A (phospho-acceptor) domain DKK66_13450 PF01627 Hpt domain DKK66_13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_13450 PF00672 HAMP domain DKK66_13455 PF00486 Transcriptional regulatory protein, C terminal DKK66_13455 PF00072 Response regulator receiver domain DKK66_13460 PF00512 His Kinase A (phospho-acceptor) domain DKK66_13460 PF00072 Response regulator receiver domain DKK66_13460 PF09308 LuxQ, periplasmic DKK66_13460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_13470 PF08448 PAS fold DKK66_13470 PF00563 EAL domain DKK66_13470 PF00990 Diguanylate cyclase, GGDEF domain DKK66_13470 PF08447 PAS fold DKK66_13515 PF00005 ABC transporter DKK66_13515 PF08402 TOBE domain DKK66_13520 PF04073 Aminoacyl-tRNA editing domain DKK66_13525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_13525 PF00672 HAMP domain DKK66_13530 PF01037 Lrp/AsnC ligand binding domain DKK66_13535 PF01266 FAD dependent oxidoreductase DKK66_13540 PF00842 Alanine racemase, C-terminal domain DKK66_13540 PF01168 Alanine racemase, N-terminal domain DKK66_13550 PF00072 Response regulator receiver domain DKK66_13550 PF00196 Bacterial regulatory proteins, luxR family DKK66_13555 PF00512 His Kinase A (phospho-acceptor) domain DKK66_13555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_13555 PF00989 PAS fold DKK66_13565 PF05726 Pirin C-terminal cupin domain DKK66_13565 PF02678 Pirin DKK66_13570 PF02678 Pirin DKK66_13570 PF05726 Pirin C-terminal cupin domain DKK66_13575 PF03466 LysR substrate binding domain DKK66_13575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_13580 PF00392 Bacterial regulatory proteins, gntR family DKK66_13580 PF07729 FCD domain DKK66_13605 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DKK66_13605 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DKK66_13610 PF00551 Formyl transferase DKK66_13610 PF01842 ACT domain DKK66_13625 PF13344 Haloacid dehalogenase-like hydrolase DKK66_13625 PF00293 NUDIX domain DKK66_13630 PF02673 Bacitracin resistance protein BacA DKK66_13660 PF14403 Circularly permuted ATP-grasp type 2 DKK66_13700 PF01411 tRNA synthetases class II (A) DKK66_13700 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DKK66_13700 PF02272 DHHA1 domain DKK66_13705 PF02631 RecX family DKK66_13710 PF00154 recA bacterial DNA recombination protein DKK66_13715 PF01628 HrcA protein C terminal domain DKK66_13715 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DKK66_13720 PF13406 Transglycosylase SLT domain DKK66_13725 PF12170 DNA polymerase III tau subunit V interacting with alpha DKK66_13725 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DKK66_13725 PF12169 DNA polymerase III subunits gamma and tau domain III DKK66_13730 PF02575 YbaB/EbfC DNA-binding family DKK66_13740 PF02132 RecR protein DKK66_13740 PF13662 Toprim domain DKK66_13745 PF00392 Bacterial regulatory proteins, gntR family DKK66_13745 PF00155 Aminotransferase class I and II DKK66_13750 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase DKK66_13750 PF12801 4Fe-4S binding domain DKK66_13750 PF13746 4Fe-4S dicluster domain DKK66_13755 PF01914 MarC family integral membrane protein DKK66_13785 PF07687 Peptidase dimerisation domain DKK66_13785 PF01546 Peptidase family M20/M25/M40 DKK66_13790 PF03960 ArsC family DKK66_13795 PF00437 Type II/IV secretion system protein DKK66_13800 PF13193 AMP-binding enzyme C-terminal domain DKK66_13800 PF00501 AMP-binding enzyme DKK66_13805 PF17384 RimP C-terminal SH3 domain DKK66_13805 PF02576 RimP N-terminal domain DKK66_13810 PF13184 NusA-like KH domain DKK66_13810 PF08529 NusA N-terminal domain DKK66_13815 PF11987 Translation-initiation factor 2 DKK66_13815 PF08364 Bacterial translation initiation factor IF-2 associated region DKK66_13815 PF04760 Translation initiation factor IF-2, N-terminal region DKK66_13815 PF00009 Elongation factor Tu GTP binding domain DKK66_13820 PF02033 Ribosome-binding factor A DKK66_13825 PF16198 tRNA pseudouridylate synthase B C-terminal domain DKK66_13825 PF01509 TruB family pseudouridylate synthase (N terminal domain) DKK66_13825 PF09157 Pseudouridine synthase II TruB, C-terminal DKK66_13830 PF00312 Ribosomal protein S15 DKK66_13835 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DKK66_13835 PF01138 3' exoribonuclease family, domain 1 DKK66_13835 PF03725 3' exoribonuclease family, domain 2 DKK66_13835 PF00575 S1 RNA binding domain DKK66_13835 PF00013 KH domain DKK66_13840 PF00202 Aminotransferase class-III DKK66_13845 PF04958 Arginine N-succinyltransferase beta subunit DKK66_13850 PF04958 Arginine N-succinyltransferase beta subunit DKK66_13855 PF00171 Aldehyde dehydrogenase family DKK66_13860 PF04996 Succinylarginine dihydrolase DKK66_13865 PF02653 Branched-chain amino acid transport system / permease component DKK66_13870 PF11862 Domain of unknown function (DUF3382) DKK66_13870 PF02653 Branched-chain amino acid transport system / permease component DKK66_13875 PF00005 ABC transporter DKK66_13875 PF12399 Branched-chain amino acid ATP-binding cassette transporter DKK66_13880 PF00005 ABC transporter DKK66_13890 PF18146 Damage-inducible protein CinA KH domain DKK66_13890 PF02464 Competence-damaged protein DKK66_13890 PF00994 Probable molybdopterin binding domain DKK66_13895 PF13416 Bacterial extracellular solute-binding protein DKK66_13900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKK66_13900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKK66_13905 PF00378 Enoyl-CoA hydratase/isomerase DKK66_13910 PF00378 Enoyl-CoA hydratase/isomerase DKK66_13915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKK66_13915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKK66_13915 PF02770 Acyl-CoA dehydrogenase, middle domain DKK66_13920 PF00171 Aldehyde dehydrogenase family DKK66_13925 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DKK66_13925 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DKK66_13930 PF13411 MerR HTH family regulatory protein DKK66_13935 PF00108 Thiolase, N-terminal domain DKK66_13935 PF02803 Thiolase, C-terminal domain DKK66_13940 PF01594 AI-2E family transporter DKK66_13945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_13945 PF08447 PAS fold DKK66_13945 PF13426 PAS domain DKK66_13950 PF00085 Thioredoxin DKK66_13950 PF02683 Cytochrome C biogenesis protein transmembrane region DKK66_13950 PF11412 Disulphide bond corrector protein DsbC DKK66_13965 PF13194 Domain of unknown function (DUF4010) DKK66_13970 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DKK66_13970 PF02779 Transketolase, pyrimidine binding domain DKK66_13970 PF02780 Transketolase, C-terminal domain DKK66_13975 PF00348 Polyprenyl synthetase DKK66_13980 PF02609 Exonuclease VII small subunit DKK66_13985 PF00106 short chain dehydrogenase DKK66_13990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_13990 PF08447 PAS fold DKK66_13990 PF13426 PAS domain DKK66_14015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_14015 PF12729 Four helix bundle sensory module for signal transduction DKK66_14015 PF00672 HAMP domain DKK66_14020 PF08264 Anticodon-binding domain of tRNA DKK66_14020 PF10458 Valyl tRNA synthetase tRNA binding arm DKK66_14020 PF00133 tRNA synthetases class I (I, L, M and V) DKK66_14025 PF00072 Response regulator receiver domain DKK66_14025 PF00990 Diguanylate cyclase, GGDEF domain DKK66_14030 PF00893 Small Multidrug Resistance protein DKK66_14040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_14040 PF03466 LysR substrate binding domain DKK66_14060 PF02798 Glutathione S-transferase, N-terminal domain DKK66_14080 PF00990 Diguanylate cyclase, GGDEF domain DKK66_14085 PF00692 dUTPase DKK66_14090 PF04127 DNA / pantothenate metabolism flavoprotein DKK66_14090 PF02441 Flavoprotein DKK66_14095 PF04002 RadC-like JAB domain DKK66_14120 PF13230 Glutamine amidotransferases class-II DKK66_14125 PF00392 Bacterial regulatory proteins, gntR family DKK66_14125 PF00155 Aminotransferase class I and II DKK66_14135 PF00749 tRNA synthetases class I (E and Q), catalytic domain DKK66_14140 PF00266 Aminotransferase class-V DKK66_14145 PF01037 Lrp/AsnC ligand binding domain DKK66_14150 PF03060 Nitronate monooxygenase DKK66_14155 PF00857 Isochorismatase family DKK66_14160 PF00472 RF-1 domain DKK66_14165 PF03707 Bacterial signalling protein N terminal repeat DKK66_14165 PF00990 Diguanylate cyclase, GGDEF domain DKK66_14165 PF00563 EAL domain DKK66_14170 PF01176 Translation initiation factor 1A / IF-1 DKK66_14175 PF00324 Amino acid permease DKK66_14180 PF01914 MarC family integral membrane protein DKK66_14190 PF05962 HutD DKK66_14195 PF00465 Iron-containing alcohol dehydrogenase DKK66_14200 PF03466 LysR substrate binding domain DKK66_14200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_14205 PF01925 Sulfite exporter TauE/SafE DKK66_14225 PF04403 Paraquat-inducible protein A DKK66_14230 PF02470 MlaD protein DKK66_14240 PF00892 EamA-like transporter family DKK66_14245 PF00849 RNA pseudouridylate synthase DKK66_14245 PF01479 S4 domain DKK66_14250 PF12697 Alpha/beta hydrolase family DKK66_14275 PF02803 Thiolase, C-terminal domain DKK66_14275 PF00108 Thiolase, N-terminal domain DKK66_14280 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DKK66_14285 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKK66_14290 PF01479 S4 domain DKK66_14295 PF12832 MFS_1 like family DKK66_14305 PF00330 Aconitase family (aconitate hydratase) DKK66_14315 PF00694 Aconitase C-terminal domain DKK66_14320 PF08241 Methyltransferase domain DKK66_14325 PF00180 Isocitrate/isopropylmalate dehydrogenase DKK66_14330 PF01118 Semialdehyde dehydrogenase, NAD binding domain DKK66_14330 PF02774 Semialdehyde dehydrogenase, dimerisation domain DKK66_14335 PF01118 Semialdehyde dehydrogenase, NAD binding domain DKK66_14335 PF02774 Semialdehyde dehydrogenase, dimerisation domain DKK66_14350 PF01416 tRNA pseudouridine synthase DKK66_14355 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DKK66_14360 PF00291 Pyridoxal-phosphate dependent enzyme DKK66_14365 PF00290 Tryptophan synthase alpha chain DKK66_14370 PF01039 Carboxyl transferase domain DKK66_14370 PF17848 Acetyl-coA carboxylase zinc finger domain DKK66_14375 PF01565 FAD binding domain DKK66_14375 PF02913 FAD linked oxidases, C-terminal domain DKK66_14380 PF00005 ABC transporter DKK66_14380 PF12848 ABC transporter DKK66_14385 PF00814 Glycoprotease family DKK66_14390 PF02566 OsmC-like protein DKK66_14395 PF00460 Flagella basal body rod protein DKK66_14400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DKK66_14400 PF00460 Flagella basal body rod protein DKK66_14405 PF13861 FlgD Tudor-like domain DKK66_14405 PF13860 FlgD Ig-like domain DKK66_14405 PF03963 Flagellar hook capping protein - N-terminal region DKK66_14410 PF00460 Flagella basal body rod protein DKK66_14410 PF07559 Flagellar basal body protein FlaE DKK66_14410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DKK66_14415 PF00460 Flagella basal body rod protein DKK66_14415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DKK66_14420 PF00460 Flagella basal body rod protein DKK66_14420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DKK66_14425 PF02107 Flagellar L-ring protein DKK66_14430 PF02119 Flagellar P-ring protein DKK66_14435 PF10135 Rod binding protein DKK66_14435 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DKK66_14440 PF00460 Flagella basal body rod protein DKK66_14440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DKK66_14450 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DKK66_14455 PF00378 Enoyl-CoA hydratase/isomerase DKK66_14460 PF00561 alpha/beta hydrolase fold DKK66_14465 PF00563 EAL domain DKK66_14465 PF12792 CSS motif domain associated with EAL DKK66_14470 PF08402 TOBE domain DKK66_14470 PF00005 ABC transporter DKK66_14475 PF01266 FAD dependent oxidoreductase DKK66_14480 PF17810 Arginine decarboxylase helical bundle domain DKK66_14480 PF17944 Arginine decarboxylase C-terminal helical extension DKK66_14480 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DKK66_14485 PF00324 Amino acid permease DKK66_14490 PF00795 Carbon-nitrogen hydrolase DKK66_14495 PF00196 Bacterial regulatory proteins, luxR family DKK66_14510 PF13344 Haloacid dehalogenase-like hydrolase DKK66_14510 PF00293 NUDIX domain DKK66_14515 PF04324 BFD-like [2Fe-2S] binding domain DKK66_14530 PF02308 MgtC family DKK66_14535 PF01566 Natural resistance-associated macrophage protein DKK66_14545 PF01042 Endoribonuclease L-PSP DKK66_14555 PF08411 Exonuclease C-terminal DKK66_14555 PF00929 Exonuclease DKK66_14560 PF00265 Thymidine kinase DKK66_14565 PF08676 MutL C terminal dimerisation domain DKK66_14565 PF01119 DNA mismatch repair protein, C-terminal domain DKK66_14570 PF09335 SNARE associated Golgi protein DKK66_14575 PF07549 SecD/SecF GG Motif DKK66_14575 PF02355 Protein export membrane protein DKK66_14580 PF02355 Protein export membrane protein DKK66_14580 PF13721 SecD export protein N-terminal TM region DKK66_14580 PF07549 SecD/SecF GG Motif DKK66_14585 PF02699 Preprotein translocase subunit DKK66_14590 PF01702 Queuine tRNA-ribosyltransferase DKK66_14600 PF02824 TGS domain DKK66_14600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DKK66_14600 PF03129 Anticodon binding domain DKK66_14600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DKK66_14605 PF00707 Translation initiation factor IF-3, C-terminal domain DKK66_14605 PF05198 Translation initiation factor IF-3, N-terminal domain DKK66_14610 PF01632 Ribosomal protein L35 DKK66_14615 PF00453 Ribosomal protein L20 DKK66_14620 PF01409 tRNA synthetases class II core domain (F) DKK66_14620 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DKK66_14625 PF03484 tRNA synthetase B5 domain DKK66_14625 PF03483 B3/4 domain DKK66_14625 PF01588 Putative tRNA binding domain DKK66_14625 PF03147 Ferredoxin-fold anticodon binding domain DKK66_14625 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DKK66_14630 PF00216 Bacterial DNA-binding protein DKK66_14650 PF00072 Response regulator receiver domain DKK66_14650 PF00196 Bacterial regulatory proteins, luxR family DKK66_14660 PF00072 Response regulator receiver domain DKK66_14660 PF00512 His Kinase A (phospho-acceptor) domain DKK66_14660 PF01627 Hpt domain DKK66_14660 PF00672 HAMP domain DKK66_14660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_14665 PF00171 Aldehyde dehydrogenase family DKK66_14690 PF00672 HAMP domain DKK66_14690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_14690 PF02743 Cache domain DKK66_14695 PF01741 Large-conductance mechanosensitive channel, MscL DKK66_14715 PF01571 Aminomethyltransferase folate-binding domain DKK66_14720 PF00816 H-NS histone family DKK66_14730 PF00246 Zinc carboxypeptidase DKK66_14730 PF18027 Cytosolic carboxypeptidase N-terminal domain DKK66_14740 PF05233 PHB accumulation regulatory domain DKK66_14740 PF07879 PHB/PHA accumulation regulator DNA-binding domain DKK66_14750 PF00171 Aldehyde dehydrogenase family DKK66_14755 PF00202 Aminotransferase class-III DKK66_14760 PF12833 Helix-turn-helix domain DKK66_14760 PF02311 AraC-like ligand binding domain DKK66_14765 PF02566 OsmC-like protein DKK66_14775 PF04055 Radical SAM superfamily DKK66_14775 PF18693 TRAM domain DKK66_14775 PF00919 Uncharacterized protein family UPF0004 DKK66_14780 PF08447 PAS fold DKK66_14780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_14780 PF00512 His Kinase A (phospho-acceptor) domain DKK66_14780 PF00989 PAS fold DKK66_14785 PF05163 DinB family DKK66_14795 PF00374 Nickel-dependent hydrogenase DKK66_14800 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DKK66_14800 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DKK66_14805 PF00158 Sigma-54 interaction domain DKK66_14805 PF00072 Response regulator receiver domain DKK66_14805 PF02954 Bacterial regulatory protein, Fis family DKK66_14810 PF02769 AIR synthase related protein, C-terminal domain DKK66_14810 PF00586 AIR synthase related protein, N-terminal domain DKK66_14815 PF01924 Hydrogenase formation hypA family DKK66_14820 PF01455 HupF/HypC family DKK66_14825 PF17788 HypF Kae1-like domain DKK66_14825 PF01300 Telomere recombination DKK66_14825 PF00708 Acylphosphatase DKK66_14825 PF07503 HypF finger DKK66_14830 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKK66_14835 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DKK66_14840 PF00374 Nickel-dependent hydrogenase DKK66_14845 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE DKK66_14850 PF00301 Rubredoxin DKK66_14855 PF04809 HupH hydrogenase expression protein, C-terminal conserved region DKK66_14860 PF07449 Hydrogenase-1 expression protein HyaE DKK66_14865 PF01455 HupF/HypC family DKK66_14870 PF01750 Hydrogenase maturation protease DKK66_14900 PF01381 Helix-turn-helix DKK66_14905 PF01292 Prokaryotic cytochrome b561 DKK66_14910 PF00374 Nickel-dependent hydrogenase DKK66_14915 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DKK66_14915 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DKK66_14920 PF03707 Bacterial signalling protein N terminal repeat DKK66_14920 PF00990 Diguanylate cyclase, GGDEF domain DKK66_14920 PF00563 EAL domain DKK66_14925 PF12833 Helix-turn-helix domain DKK66_14930 PF01810 LysE type translocator DKK66_14945 PF01722 BolA-like protein DKK66_14950 PF03795 YCII-related domain DKK66_14955 PF04279 Intracellular septation protein A DKK66_14960 PF01145 SPFH domain / Band 7 family DKK66_14970 PF09186 Domain of unknown function (DUF1949) DKK66_14970 PF01205 Uncharacterized protein family UPF0029 DKK66_14980 PF13419 Haloacid dehalogenase-like hydrolase DKK66_14990 PF00478 IMP dehydrogenase / GMP reductase domain DKK66_14995 PF08447 PAS fold DKK66_14995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_15005 PF08335 GlnD PII-uridylyltransferase DKK66_15005 PF01966 HD domain DKK66_15005 PF01842 ACT domain DKK66_15005 PF01909 Nucleotidyltransferase domain DKK66_15020 PF00883 Cytosol aminopeptidase family, catalytic domain DKK66_15020 PF02789 Cytosol aminopeptidase family, N-terminal domain DKK66_15035 PF01923 Cobalamin adenosyltransferase DKK66_15045 PF13638 PIN domain DKK66_15045 PF02562 PhoH-like protein DKK66_15050 PF00578 AhpC/TSA family DKK66_15060 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKK66_15080 PF00440 Bacterial regulatory proteins, tetR family DKK66_15080 PF17932 Tetracyclin repressor-like, C-terminal domain DKK66_15085 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DKK66_15095 PF01063 Amino-transferase class IV DKK66_15100 PF08335 GlnD PII-uridylyltransferase DKK66_15100 PF03710 Glutamate-ammonia ligase adenylyltransferase DKK66_15110 PF00795 Carbon-nitrogen hydrolase DKK66_15115 PF01523 Putative modulator of DNA gyrase DKK66_15125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_15125 PF03466 LysR substrate binding domain DKK66_15135 PF00486 Transcriptional regulatory protein, C terminal DKK66_15135 PF00072 Response regulator receiver domain DKK66_15140 PF16750 Sensor domain of 2-component histidine kinase DKK66_15140 PF00512 His Kinase A (phospho-acceptor) domain DKK66_15140 PF00672 HAMP domain DKK66_15140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_15150 PF01227 GTP cyclohydrolase I DKK66_15160 PF00990 Diguanylate cyclase, GGDEF domain DKK66_15160 PF00072 Response regulator receiver domain DKK66_15165 PF01641 SelR domain DKK66_15170 PF00300 Histidine phosphatase superfamily (branch 1) DKK66_15175 PF01966 HD domain DKK66_15195 PF02901 Pyruvate formate lyase-like DKK66_15195 PF01228 Glycine radical DKK66_15200 PF04055 Radical SAM superfamily DKK66_15225 PF00313 'Cold-shock' DNA-binding domain DKK66_15240 PF01738 Dienelactone hydrolase family DKK66_15255 PF06865 Pyrimidine/purine nucleoside phosphorylase DKK66_15260 PF00563 EAL domain DKK66_15260 PF00196 Bacterial regulatory proteins, luxR family DKK66_15265 PF07885 Ion channel DKK66_15265 PF02254 TrkA-N domain DKK66_15280 PF04632 Fusaric acid resistance protein family DKK66_15290 PF13533 Biotin-lipoyl like DKK66_15295 PF02321 Outer membrane efflux protein DKK66_15300 PF17158 Membrane-associated sensor, integral membrane domain DKK66_15300 PF00990 Diguanylate cyclase, GGDEF domain DKK66_15310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKK66_15310 PF02785 Biotin carboxylase C-terminal domain DKK66_15310 PF00289 Biotin carboxylase, N-terminal domain DKK66_15315 PF00364 Biotin-requiring enzyme DKK66_15320 PF03746 LamB/YcsF family DKK66_15325 PF16671 Actin cross-linking domain DKK66_15325 PF04717 Type VI secretion system, phage-baseplate injector DKK66_15330 PF13091 PLD-like domain DKK66_15330 PF13396 Phospholipase_D-nuclease N-terminal DKK66_15340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_15340 PF03466 LysR substrate binding domain DKK66_15345 PF00881 Nitroreductase family DKK66_15350 PF07685 CobB/CobQ-like glutamine amidotransferase domain DKK66_15350 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DKK66_15355 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DKK66_15360 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKK66_15360 PF07683 Cobalamin synthesis protein cobW C-terminal domain DKK66_15365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DKK66_15365 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DKK66_15380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DKK66_15385 PF10414 Sirohaem synthase dimerisation region DKK66_15385 PF14824 Sirohaem biosynthesis protein central DKK66_15385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DKK66_15390 PF01888 CbiD DKK66_15395 PF01903 CbiX DKK66_15405 PF07728 AAA domain (dynein-related subfamily) DKK66_15405 PF13519 von Willebrand factor type A domain DKK66_15405 PF17863 AAA lid domain DKK66_15410 PF02514 CobN/Magnesium Chelatase DKK66_15420 PF03824 High-affinity nickel-transport protein DKK66_15425 PF00155 Aminotransferase class I and II DKK66_15430 PF03186 CobD/Cbib protein DKK66_15435 PF07685 CobB/CobQ-like glutamine amidotransferase domain DKK66_15440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_15440 PF00672 HAMP domain DKK66_15440 PF00072 Response regulator receiver domain DKK66_15440 PF01627 Hpt domain DKK66_15440 PF00512 His Kinase A (phospho-acceptor) domain DKK66_15440 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DKK66_15455 PF01042 Endoribonuclease L-PSP DKK66_15465 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKK66_15470 PF00795 Carbon-nitrogen hydrolase DKK66_15475 PF00155 Aminotransferase class I and II DKK66_15480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_15480 PF03466 LysR substrate binding domain DKK66_15485 PF00436 Single-strand binding protein family DKK66_15490 PF07690 Major Facilitator Superfamily DKK66_15495 PF17760 UvrA interaction domain DKK66_15495 PF17755 UvrA DNA-binding domain DKK66_15510 PF00850 Histone deacetylase domain DKK66_15525 PF00196 Bacterial regulatory proteins, luxR family DKK66_15530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_15530 PF03466 LysR substrate binding domain DKK66_15535 PF07690 Major Facilitator Superfamily DKK66_15540 PF03315 Serine dehydratase beta chain DKK66_15540 PF03313 Serine dehydratase alpha chain DKK66_15550 PF03466 LysR substrate binding domain DKK66_15550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_15555 PF02574 Homocysteine S-methyltransferase DKK66_15560 PF00672 HAMP domain DKK66_15560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_15560 PF17200 Single Cache domain 2 DKK66_15565 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DKK66_15570 PF00005 ABC transporter DKK66_15575 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_15580 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DKK66_15585 PF00271 Helicase conserved C-terminal domain DKK66_15585 PF00270 DEAD/DEAH box helicase DKK66_15585 PF03880 DbpA RNA binding domain DKK66_15590 PF00672 HAMP domain DKK66_15590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_15605 PF03466 LysR substrate binding domain DKK66_15605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_15610 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DKK66_15610 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DKK66_15615 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKK66_15625 PF03358 NADPH-dependent FMN reductase DKK66_15630 PF02666 Phosphatidylserine decarboxylase DKK66_15635 PF00990 Diguanylate cyclase, GGDEF domain DKK66_15635 PF05230 MASE2 domain DKK66_15640 PF04303 PrpF protein DKK66_15645 PF00694 Aconitase C-terminal domain DKK66_15645 PF00330 Aconitase family (aconitate hydratase) DKK66_15650 PF00285 Citrate synthase, C-terminal domain DKK66_15660 PF04542 Sigma-70 region 2 DKK66_15660 PF08281 Sigma-70, region 4 DKK66_15675 PF13180 PDZ domain DKK66_15685 PF03144 Elongation factor Tu domain 2 DKK66_15685 PF06421 GTP-binding protein LepA C-terminus DKK66_15685 PF00009 Elongation factor Tu GTP binding domain DKK66_15685 PF00679 Elongation factor G C-terminus DKK66_15690 PF10502 Signal peptidase, peptidase S26 DKK66_15700 PF00035 Double-stranded RNA binding motif DKK66_15700 PF14622 Ribonuclease-III-like DKK66_15705 PF07650 KH domain DKK66_15705 PF01926 50S ribosome-binding GTPase DKK66_15715 PF11967 Recombination protein O N terminal DKK66_15715 PF02565 Recombination protein O C terminal DKK66_15720 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DKK66_15725 PF04307 LexA-binding, inner membrane-associated putative hydrolase DKK66_15730 PF01648 4'-phosphopantetheinyl transferase superfamily DKK66_15735 PF00933 Glycosyl hydrolase family 3 N terminal domain DKK66_15750 PF00270 DEAD/DEAH box helicase DKK66_15750 PF04408 Helicase associated domain (HA2) DKK66_15750 PF11898 Domain of unknown function (DUF3418) DKK66_15750 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DKK66_15750 PF00271 Helicase conserved C-terminal domain DKK66_15755 PF08447 PAS fold DKK66_15755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_15755 PF13426 PAS domain DKK66_15770 PF01757 Acyltransferase family DKK66_15780 PF02397 Bacterial sugar transferase DKK66_15825 PF01757 Acyltransferase family DKK66_15830 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DKK66_15830 PF00722 Glycosyl hydrolases family 16 DKK66_15855 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DKK66_15855 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DKK66_15855 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DKK66_15860 PF00483 Nucleotidyl transferase DKK66_15865 PF01050 Mannose-6-phosphate isomerase DKK66_15865 PF00483 Nucleotidyl transferase DKK66_15875 PF01370 NAD dependent epimerase/dehydratase family DKK66_15880 PF01515 Phosphate acetyl/butaryl transferase DKK66_15880 PF07085 DRTGG domain DKK66_15885 PF00871 Acetokinase family DKK66_15910 PF17674 HHH domain DKK66_15910 PF00575 S1 RNA binding domain DKK66_15910 PF09371 Tex-like protein N-terminal domain DKK66_15910 PF16921 Tex protein YqgF-like domain DKK66_15945 PF17676 LD-carboxypeptidase C-terminal domain DKK66_15945 PF02016 LD-carboxypeptidase N-terminal domain DKK66_15955 PF01507 Phosphoadenosine phosphosulfate reductase family DKK66_15960 PF00009 Elongation factor Tu GTP binding domain DKK66_15965 PF02743 Cache domain DKK66_15965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_15965 PF00672 HAMP domain DKK66_15970 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DKK66_15975 PF00849 RNA pseudouridylate synthase DKK66_16010 PF01569 PAP2 superfamily DKK66_16030 PF00158 Sigma-54 interaction domain DKK66_16030 PF02954 Bacterial regulatory protein, Fis family DKK66_16030 PF00072 Response regulator receiver domain DKK66_16040 PF01654 Cytochrome bd terminal oxidase subunit I DKK66_16045 PF02322 Cytochrome bd terminal oxidase subunit II DKK66_16070 PF03466 LysR substrate binding domain DKK66_16070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16075 PF00106 short chain dehydrogenase DKK66_16080 PF12706 Beta-lactamase superfamily domain DKK66_16085 PF00248 Aldo/keto reductase family DKK66_16095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16095 PF03466 LysR substrate binding domain DKK66_16100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKK66_16105 PF00873 AcrB/AcrD/AcrF family DKK66_16110 PF02321 Outer membrane efflux protein DKK66_16125 PF08244 Glycosyl hydrolases family 32 C terminal DKK66_16125 PF00251 Glycosyl hydrolases family 32 N-terminal domain DKK66_16130 PF00367 phosphotransferase system, EIIB DKK66_16130 PF02378 Phosphotransferase system, EIIC DKK66_16135 PF00356 Bacterial regulatory proteins, lacI family DKK66_16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16140 PF03466 LysR substrate binding domain DKK66_16155 PF03466 LysR substrate binding domain DKK66_16155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16170 PF02743 Cache domain DKK66_16170 PF00672 HAMP domain DKK66_16170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_16175 PF00561 alpha/beta hydrolase fold DKK66_16175 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DKK66_16180 PF03956 Lysine exporter LysO DKK66_16190 PF07690 Major Facilitator Superfamily DKK66_16195 PF03466 LysR substrate binding domain DKK66_16195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16205 PF02798 Glutathione S-transferase, N-terminal domain DKK66_16210 PF13280 WYL domain DKK66_16210 PF08279 HTH domain DKK66_16215 PF03466 LysR substrate binding domain DKK66_16215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16235 PF00817 impB/mucB/samB family DKK66_16235 PF13438 Domain of unknown function (DUF4113) DKK66_16235 PF11799 impB/mucB/samB family C-terminal domain DKK66_16240 PF00717 Peptidase S24-like DKK66_16265 PF02463 RecF/RecN/SMC N terminal domain DKK66_16270 PF01513 ATP-NAD kinase DKK66_16275 PF00072 Response regulator receiver domain DKK66_16275 PF00196 Bacterial regulatory proteins, luxR family DKK66_16285 PF01625 Peptide methionine sulfoxide reductase DKK66_16290 PF00850 Histone deacetylase domain DKK66_16305 PF01207 Dihydrouridine synthase (Dus) DKK66_16310 PF00717 Peptidase S24-like DKK66_16315 PF00196 Bacterial regulatory proteins, luxR family DKK66_16315 PF00072 Response regulator receiver domain DKK66_16320 PF00171 Aldehyde dehydrogenase family DKK66_16325 PF00202 Aminotransferase class-III DKK66_16330 PF13416 Bacterial extracellular solute-binding protein DKK66_16350 PF07687 Peptidase dimerisation domain DKK66_16350 PF01546 Peptidase family M20/M25/M40 DKK66_16355 PF03466 LysR substrate binding domain DKK66_16355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16365 PF01169 Uncharacterized protein family UPF0016 DKK66_16375 PF07195 Flagellar hook-associated protein 2 C-terminus DKK66_16375 PF02465 Flagellar hook-associated protein 2 N-terminus DKK66_16375 PF07196 Flagellin hook IN motif DKK66_16380 PF01266 FAD dependent oxidoreductase DKK66_16400 PF08274 PhnA Zinc-Ribbon DKK66_16400 PF03831 PhnA domain DKK66_16405 PF01554 MatE DKK66_16425 PF00892 EamA-like transporter family DKK66_16435 PF00875 DNA photolyase DKK66_16435 PF03441 FAD binding domain of DNA photolyase DKK66_16440 PF01593 Flavin containing amine oxidoreductase DKK66_16450 PF08212 Lipocalin-like domain DKK66_16455 PF04244 Deoxyribodipyrimidine photo-lyase-related protein DKK66_16460 PF00875 DNA photolyase DKK66_16460 PF03441 FAD binding domain of DNA photolyase DKK66_16475 PF00106 short chain dehydrogenase DKK66_16495 PF01593 Flavin containing amine oxidoreductase DKK66_16500 PF00440 Bacterial regulatory proteins, tetR family DKK66_16505 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_16510 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKK66_16515 PF02965 Vitamin B12 dependent methionine synthase, activation domain DKK66_16515 PF02607 B12 binding domain DKK66_16515 PF00809 Pterin binding enzyme DKK66_16515 PF02310 B12 binding domain DKK66_16515 PF02574 Homocysteine S-methyltransferase DKK66_16530 PF17151 Periplasmic sensor domain DKK66_16530 PF00990 Diguanylate cyclase, GGDEF domain DKK66_16535 PF00563 EAL domain DKK66_16535 PF00990 Diguanylate cyclase, GGDEF domain DKK66_16535 PF03707 Bacterial signalling protein N terminal repeat DKK66_16540 PF07690 Major Facilitator Superfamily DKK66_16550 PF00890 FAD binding domain DKK66_16550 PF03358 NADPH-dependent FMN reductase DKK66_16550 PF04205 FMN-binding domain DKK66_16555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16555 PF03466 LysR substrate binding domain DKK66_16570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16570 PF03466 LysR substrate binding domain DKK66_16575 PF00563 EAL domain DKK66_16575 PF08495 FIST N domain DKK66_16575 PF10442 FIST C domain DKK66_16575 PF00990 Diguanylate cyclase, GGDEF domain DKK66_16580 PF03481 Putative GTP-binding controlling metal-binding DKK66_16580 PF01300 Telomere recombination DKK66_16585 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) DKK66_16590 PF00361 Proton-conducting membrane transporter DKK66_16590 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DKK66_16595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16595 PF03466 LysR substrate binding domain DKK66_16605 PF01590 GAF domain DKK66_16605 PF02954 Bacterial regulatory protein, Fis family DKK66_16605 PF00158 Sigma-54 interaction domain DKK66_16610 PF05378 Hydantoinase/oxoprolinase N-terminal region DKK66_16610 PF01968 Hydantoinase/oxoprolinase DKK66_16615 PF02538 Hydantoinase B/oxoprolinase DKK66_16620 PF08882 Acetone carboxylase gamma subunit DKK66_16625 PF03861 ANTAR domain DKK66_16625 PF08376 Nitrate and nitrite sensing DKK66_16630 PF00005 ABC transporter DKK66_16635 PF07690 Major Facilitator Superfamily DKK66_16640 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DKK66_16640 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DKK66_16640 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKK66_16640 PF18267 Rubredoxin NAD+ reductase C-terminal domain DKK66_16640 PF04324 BFD-like [2Fe-2S] binding domain DKK66_16645 PF00355 Rieske [2Fe-2S] domain DKK66_16650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DKK66_16650 PF01568 Molydopterin dinucleotide binding domain DKK66_16650 PF04324 BFD-like [2Fe-2S] binding domain DKK66_16650 PF00384 Molybdopterin oxidoreductase DKK66_16655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DKK66_16670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16670 PF03466 LysR substrate binding domain DKK66_16680 PF00155 Aminotransferase class I and II DKK66_16680 PF00392 Bacterial regulatory proteins, gntR family DKK66_16685 PF01042 Endoribonuclease L-PSP DKK66_16690 PF00581 Rhodanese-like domain DKK66_16690 PF11127 Protein of unknown function (DUF2892) DKK66_16695 PF01053 Cys/Met metabolism PLP-dependent enzyme DKK66_16700 PF00850 Histone deacetylase domain DKK66_16705 PF01037 Lrp/AsnC ligand binding domain DKK66_16710 PF02743 Cache domain DKK66_16710 PF00672 HAMP domain DKK66_16710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_16790 PF13148 Protein of unknown function (DUF3987) DKK66_16845 PF00589 Phage integrase family DKK66_16845 PF13356 Arm DNA-binding domain DKK66_16865 PF11008 Protein of unknown function (DUF2846) DKK66_16870 PF07804 HipA-like C-terminal domain DKK66_16900 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system DKK66_16905 PF01966 HD domain DKK66_16905 PF13286 Phosphohydrolase-associated domain DKK66_16910 PF00268 Ribonucleotide reductase, small chain DKK66_16925 PF00317 Ribonucleotide reductase, all-alpha domain DKK66_16925 PF02867 Ribonucleotide reductase, barrel domain DKK66_16925 PF03477 ATP cone domain DKK66_16935 PF00849 RNA pseudouridylate synthase DKK66_16935 PF01479 S4 domain DKK66_16940 PF13525 Outer membrane lipoprotein DKK66_16945 PF00543 Nitrogen regulatory protein P-II DKK66_16950 PF02769 AIR synthase related protein, C-terminal domain DKK66_16950 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DKK66_16950 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DKK66_16955 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DKK66_16960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16960 PF03466 LysR substrate binding domain DKK66_16970 PF02678 Pirin DKK66_16970 PF05726 Pirin C-terminal cupin domain DKK66_16985 PF00857 Isochorismatase family DKK66_16990 PF00857 Isochorismatase family DKK66_16995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_16995 PF03466 LysR substrate binding domain DKK66_17005 PF05175 Methyltransferase small domain DKK66_17010 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DKK66_17010 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DKK66_17010 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DKK66_17010 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DKK66_17015 PF02885 Glycosyl transferase family, helical bundle domain DKK66_17015 PF00591 Glycosyl transferase family, a/b domain DKK66_17020 PF00117 Glutamine amidotransferase class-I DKK66_17030 PF01966 HD domain DKK66_17060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_17060 PF00672 HAMP domain DKK66_17065 PF00563 EAL domain DKK66_17065 PF00990 Diguanylate cyclase, GGDEF domain DKK66_17065 PF03707 Bacterial signalling protein N terminal repeat DKK66_17070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKK66_17075 PF07690 Major Facilitator Superfamily DKK66_17085 PF00403 Heavy-metal-associated domain DKK66_17090 PF02801 Beta-ketoacyl synthase, C-terminal domain DKK66_17090 PF00698 Acyl transferase domain DKK66_17090 PF08240 Alcohol dehydrogenase GroES-like domain DKK66_17090 PF08990 Erythronolide synthase docking DKK66_17090 PF09277 Erythronolide synthase, docking DKK66_17090 PF00550 Phosphopantetheine attachment site DKK66_17090 PF14765 Polyketide synthase dehydratase DKK66_17090 PF16197 Ketoacyl-synthetase C-terminal extension DKK66_17090 PF00109 Beta-ketoacyl synthase, N-terminal domain DKK66_17090 PF08659 KR domain DKK66_17105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DKK66_17110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKK66_17110 PF00529 HlyD membrane-fusion protein of T1SS DKK66_17115 PF00873 AcrB/AcrD/AcrF family DKK66_17120 PF02321 Outer membrane efflux protein DKK66_17125 PF00440 Bacterial regulatory proteins, tetR family DKK66_17125 PF08361 MAATS-type transcriptional repressor, C-terminal region DKK66_17135 PF00248 Aldo/keto reductase family DKK66_17145 PF02646 RmuC family DKK66_17150 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DKK66_17150 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DKK66_17160 PF01368 DHH family DKK66_17160 PF17768 RecJ OB domain DKK66_17160 PF02272 DHHA1 domain DKK66_17170 PF03702 Anhydro-N-acetylmuramic acid kinase DKK66_17175 PF17854 FtsK alpha domain DKK66_17175 PF01580 FtsK/SpoIIIE family DKK66_17175 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DKK66_17175 PF09397 Ftsk gamma domain DKK66_17180 PF00762 Ferrochelatase DKK66_17185 PF13458 Periplasmic binding protein DKK66_17190 PF13458 Periplasmic binding protein DKK66_17195 PF00378 Enoyl-CoA hydratase/isomerase DKK66_17210 PF01678 Diaminopimelate epimerase DKK66_17225 PF18152 DAHP synthase ferredoxin-like domain DKK66_17225 PF00793 DAHP synthetase I family DKK66_17235 PF03641 Possible lysine decarboxylase DKK66_17240 PF01842 ACT domain DKK66_17240 PF01817 Chorismate mutase type II DKK66_17240 PF00800 Prephenate dehydratase DKK66_17255 PF00266 Aminotransferase class-V DKK66_17270 PF03989 DNA gyrase C-terminal domain, beta-propeller DKK66_17270 PF00521 DNA gyrase/topoisomerase IV, subunit A DKK66_17305 PF02350 UDP-N-acetylglucosamine 2-epimerase DKK66_17315 PF17200 Single Cache domain 2 DKK66_17315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_17315 PF00672 HAMP domain DKK66_17320 PF00155 Aminotransferase class I and II DKK66_17325 PF01037 Lrp/AsnC ligand binding domain DKK66_17335 PF04198 Putative sugar-binding domain DKK66_17350 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_17355 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_17365 PF00005 ABC transporter DKK66_17365 PF17912 MalK OB fold domain DKK66_17370 PF08125 Mannitol dehydrogenase C-terminal domain DKK66_17370 PF01232 Mannitol dehydrogenase Rossmann domain DKK66_17375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DKK66_17375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DKK66_17380 PF00923 Transaldolase/Fructose-6-phosphate aldolase DKK66_17385 PF00294 pfkB family carbohydrate kinase DKK66_17395 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_17400 PF00005 ABC transporter DKK66_17400 PF03459 TOBE domain DKK66_17410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_17410 PF03459 TOBE domain DKK66_17415 PF16360 GTP-binding GTPase Middle Region DKK66_17415 PF13167 GTP-binding GTPase N-terminal DKK66_17415 PF01926 50S ribosome-binding GTPase DKK66_17420 PF00271 Helicase conserved C-terminal domain DKK66_17420 PF00270 DEAD/DEAH box helicase DKK66_17425 PF01627 Hpt domain DKK66_17425 PF00672 HAMP domain DKK66_17425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_17425 PF00512 His Kinase A (phospho-acceptor) domain DKK66_17425 PF00072 Response regulator receiver domain DKK66_17425 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DKK66_17430 PF00072 Response regulator receiver domain DKK66_17435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_17435 PF00672 HAMP domain DKK66_17435 PF02743 Cache domain DKK66_17440 PF00216 Bacterial DNA-binding protein DKK66_17445 PF01726 LexA DNA binding domain DKK66_17445 PF00717 Peptidase S24-like DKK66_17450 PF00672 HAMP domain DKK66_17450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_17455 PF13411 MerR HTH family regulatory protein DKK66_17475 PF00072 Response regulator receiver domain DKK66_17480 PF01966 HD domain DKK66_17500 PF01613 Flavin reductase like domain DKK66_17505 PF00202 Aminotransferase class-III DKK66_17510 PF00120 Glutamine synthetase, catalytic domain DKK66_17515 PF00392 Bacterial regulatory proteins, gntR family DKK66_17515 PF07729 FCD domain DKK66_17525 PF02321 Outer membrane efflux protein DKK66_17530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKK66_17530 PF00529 HlyD membrane-fusion protein of T1SS DKK66_17535 PF07690 Major Facilitator Superfamily DKK66_17540 PF02321 Outer membrane efflux protein DKK66_17545 PF00005 ABC transporter DKK66_17545 PF02687 FtsX-like permease family DKK66_17545 PF12704 MacB-like periplasmic core domain DKK66_17550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKK66_17555 PF07730 Histidine kinase DKK66_17555 PF05231 MASE1 DKK66_17555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_17560 PF00072 Response regulator receiver domain DKK66_17560 PF00196 Bacterial regulatory proteins, luxR family DKK66_17565 PF04055 Radical SAM superfamily DKK66_17575 PF06628 Catalase-related immune-responsive DKK66_17575 PF00199 Catalase DKK66_17590 PF13476 AAA domain DKK66_17595 PF12320 Type 5 capsule protein repressor C-terminal domain DKK66_17595 PF00149 Calcineurin-like phosphoesterase DKK66_17605 PF13091 PLD-like domain DKK66_17615 PF00313 'Cold-shock' DNA-binding domain DKK66_17640 PF04055 Radical SAM superfamily DKK66_17640 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DKK66_17645 PF03099 Biotin/lipoate A/B protein ligase family DKK66_17650 PF04359 Protein of unknown function (DUF493) DKK66_17655 PF00768 D-alanyl-D-alanine carboxypeptidase DKK66_17655 PF07943 Penicillin-binding protein 5, C-terminal domain DKK66_17660 PF00585 C-terminal regulatory domain of Threonine dehydratase DKK66_17660 PF00291 Pyridoxal-phosphate dependent enzyme DKK66_17665 PF13419 Haloacid dehalogenase-like hydrolase DKK66_17695 PF03466 LysR substrate binding domain DKK66_17695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_17700 PF16957 Malonate decarboxylase, alpha subunit, transporter DKK66_17705 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DKK66_17710 PF06857 Malonate decarboxylase delta subunit (MdcD) DKK66_17715 PF01039 Carboxyl transferase domain DKK66_17725 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DKK66_17730 PF00698 Acyl transferase domain DKK66_17735 PF00202 Aminotransferase class-III DKK66_17750 PF00392 Bacterial regulatory proteins, gntR family DKK66_17750 PF07729 FCD domain DKK66_17760 PF03547 Membrane transport protein DKK66_17770 PF02910 Fumarate reductase flavoprotein C-term DKK66_17770 PF00890 FAD binding domain DKK66_17775 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DKK66_17775 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DKK66_17775 PF10531 SLBB domain DKK66_17780 PF04073 Aminoacyl-tRNA editing domain DKK66_17800 PF00005 ABC transporter DKK66_17800 PF02687 FtsX-like permease family DKK66_17800 PF12704 MacB-like periplasmic core domain DKK66_17805 PF00698 Acyl transferase domain DKK66_17805 PF08240 Alcohol dehydrogenase GroES-like domain DKK66_17805 PF16197 Ketoacyl-synthetase C-terminal extension DKK66_17805 PF00109 Beta-ketoacyl synthase, N-terminal domain DKK66_17805 PF00550 Phosphopantetheine attachment site DKK66_17805 PF00107 Zinc-binding dehydrogenase DKK66_17805 PF08659 KR domain DKK66_17805 PF02801 Beta-ketoacyl synthase, C-terminal domain DKK66_17805 PF14765 Polyketide synthase dehydratase DKK66_17815 PF00909 Ammonium Transporter Family DKK66_17840 PF00072 Response regulator receiver domain DKK66_17840 PF02954 Bacterial regulatory protein, Fis family DKK66_17840 PF00158 Sigma-54 interaction domain DKK66_17845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_17845 PF00512 His Kinase A (phospho-acceptor) domain DKK66_17850 PF06826 Predicted Permease Membrane Region DKK66_17855 PF00390 Malic enzyme, N-terminal domain DKK66_17855 PF03949 Malic enzyme, NAD binding domain DKK66_17945 PF00512 His Kinase A (phospho-acceptor) domain DKK66_17945 PF00672 HAMP domain DKK66_17945 PF01627 Hpt domain DKK66_17945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_17945 PF00072 Response regulator receiver domain DKK66_17950 PF13332 Hemagglutinin repeat DKK66_17950 PF05860 haemagglutination activity domain DKK66_17950 PF04829 Pre-toxin domain with VENN motif DKK66_17955 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DKK66_17955 PF08479 POTRA domain, ShlB-type DKK66_17955 PF17287 POTRA domain DKK66_17960 PF00196 Bacterial regulatory proteins, luxR family DKK66_17960 PF00072 Response regulator receiver domain DKK66_17965 PF00072 Response regulator receiver domain DKK66_17965 PF00672 HAMP domain DKK66_17965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_17965 PF01627 Hpt domain DKK66_17965 PF00512 His Kinase A (phospho-acceptor) domain DKK66_17965 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DKK66_17970 PF08402 TOBE domain DKK66_17970 PF00005 ABC transporter DKK66_17980 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_17985 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_17995 PF00990 Diguanylate cyclase, GGDEF domain DKK66_18005 PF03454 MoeA C-terminal region (domain IV) DKK66_18005 PF00994 Probable molybdopterin binding domain DKK66_18005 PF03453 MoeA N-terminal region (domain I and II) DKK66_18010 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DKK66_18030 PF01351 Ribonuclease HII DKK66_18035 PF02684 Lipid-A-disaccharide synthetase DKK66_18040 PF00132 Bacterial transferase hexapeptide (six repeats) DKK66_18040 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DKK66_18045 PF07977 FabA-like domain DKK66_18050 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DKK66_18050 PF00132 Bacterial transferase hexapeptide (six repeats) DKK66_18060 PF01103 Surface antigen DKK66_18060 PF07244 Surface antigen variable number repeat DKK66_18065 PF17820 PDZ domain DKK66_18065 PF02163 Peptidase family M50 DKK66_18070 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DKK66_18070 PF13288 DXP reductoisomerase C-terminal domain DKK66_18070 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DKK66_18080 PF01255 Putative undecaprenyl diphosphate synthase DKK66_18085 PF01765 Ribosome recycling factor DKK66_18090 PF00696 Amino acid kinase family DKK66_18095 PF00889 Elongation factor TS DKK66_18100 PF00318 Ribosomal protein S2 DKK66_18110 PF03060 Nitronate monooxygenase DKK66_18115 PF07690 Major Facilitator Superfamily DKK66_18125 PF04107 Glutamate-cysteine ligase family 2(GCS2) DKK66_18130 PF09297 NADH pyrophosphatase zinc ribbon domain DKK66_18130 PF00293 NUDIX domain DKK66_18135 PF02464 Competence-damaged protein DKK66_18140 PF00342 Phosphoglucose isomerase DKK66_18145 PF00929 Exonuclease DKK66_18150 PF01435 Peptidase family M48 DKK66_18155 PF01329 Pterin 4 alpha carbinolamine dehydratase DKK66_18160 PF03193 RsgA GTPase DKK66_18165 PF00106 short chain dehydrogenase DKK66_18170 PF13185 GAF domain DKK66_18180 PF00072 Response regulator receiver domain DKK66_18180 PF00486 Transcriptional regulatory protein, C terminal DKK66_18190 PF02899 Phage integrase, N-terminal SAM-like domain DKK66_18190 PF00589 Phage integrase family DKK66_18195 PF00012 Hsp70 protein DKK66_18205 PF04228 Putative neutral zinc metallopeptidase DKK66_18210 PF04608 Phosphatidylglycerophosphatase A DKK66_18215 PF02769 AIR synthase related protein, C-terminal domain DKK66_18215 PF00586 AIR synthase related protein, N-terminal domain DKK66_18220 PF01029 NusB family DKK66_18225 PF00885 6,7-dimethyl-8-ribityllumazine synthase DKK66_18230 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DKK66_18230 PF00925 GTP cyclohydrolase II DKK66_18235 PF00677 Lumazine binding domain DKK66_18240 PF16658 Class II release factor RF3, C-terminal domain DKK66_18240 PF03144 Elongation factor Tu domain 2 DKK66_18240 PF00009 Elongation factor Tu GTP binding domain DKK66_18250 PF00440 Bacterial regulatory proteins, tetR family DKK66_18250 PF08360 QacR-like protein, C-terminal region DKK66_18260 PF00005 ABC transporter DKK66_18265 PF00005 ABC transporter DKK66_18270 PF13533 Biotin-lipoyl like DKK66_18280 PF05199 GMC oxidoreductase DKK66_18290 PF00171 Aldehyde dehydrogenase family DKK66_18300 PF13426 PAS domain DKK66_18300 PF08448 PAS fold DKK66_18300 PF08447 PAS fold DKK66_18300 PF05231 MASE1 DKK66_18300 PF00990 Diguanylate cyclase, GGDEF domain DKK66_18300 PF00563 EAL domain DKK66_18305 PF09397 Ftsk gamma domain DKK66_18305 PF01580 FtsK/SpoIIIE family DKK66_18305 PF17854 FtsK alpha domain DKK66_18310 PF11791 Aconitate B N-terminal domain DKK66_18310 PF06434 Aconitate hydratase 2 N-terminus DKK66_18310 PF00330 Aconitase family (aconitate hydratase) DKK66_18315 PF03466 LysR substrate binding domain DKK66_18315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_18325 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DKK66_18330 PF00072 Response regulator receiver domain DKK66_18345 PF00266 Aminotransferase class-V DKK66_18355 PF00132 Bacterial transferase hexapeptide (six repeats) DKK66_18365 PF03180 NLPA lipoprotein DKK66_18370 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_18375 PF09383 NIL domain DKK66_18375 PF00005 ABC transporter DKK66_18385 PF00005 ABC transporter DKK66_18390 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_18395 PF00296 Luciferase-like monooxygenase DKK66_18400 PF09084 NMT1/THI5 like DKK66_18405 PF03358 NADPH-dependent FMN reductase DKK66_18415 PF00324 Amino acid permease DKK66_18420 PF00989 PAS fold DKK66_18420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_18420 PF00512 His Kinase A (phospho-acceptor) domain DKK66_18425 PF00563 EAL domain DKK66_18425 PF03707 Bacterial signalling protein N terminal repeat DKK66_18425 PF00990 Diguanylate cyclase, GGDEF domain DKK66_18435 PF01220 Dehydroquinase class II DKK66_18440 PF08501 Shikimate dehydrogenase substrate binding domain DKK66_18440 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DKK66_18440 PF01488 Shikimate / quinate 5-dehydrogenase DKK66_18445 PF04261 Dyp-type peroxidase family DKK66_18450 PF13473 Cupredoxin-like domain DKK66_18450 PF09375 Imelysin DKK66_18455 PF13473 Cupredoxin-like domain DKK66_18455 PF09375 Imelysin DKK66_18460 PF03239 Iron permease FTR1 family DKK66_18465 PF00593 TonB dependent receptor DKK66_18465 PF07715 TonB-dependent Receptor Plug Domain DKK66_18475 PF13185 GAF domain DKK66_18475 PF00990 Diguanylate cyclase, GGDEF domain DKK66_18480 PF04234 CopC domain DKK66_18485 PF05425 Copper resistance protein D DKK66_18490 PF07690 Major Facilitator Superfamily DKK66_18500 PF02525 Flavodoxin-like fold DKK66_18510 PF00465 Iron-containing alcohol dehydrogenase DKK66_18515 PF03466 LysR substrate binding domain DKK66_18515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_18520 PF12833 Helix-turn-helix domain DKK66_18520 PF06719 AraC-type transcriptional regulator N-terminus DKK66_18525 PF12801 4Fe-4S binding domain DKK66_18525 PF13746 4Fe-4S dicluster domain DKK66_18525 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase DKK66_18530 PF07715 TonB-dependent Receptor Plug Domain DKK66_18530 PF00593 TonB dependent receptor DKK66_18545 PF10417 C-terminal domain of 1-Cys peroxiredoxin DKK66_18545 PF00578 AhpC/TSA family DKK66_18550 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DKK66_18555 PF03547 Membrane transport protein DKK66_18560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_18560 PF03466 LysR substrate binding domain DKK66_18565 PF07690 Major Facilitator Superfamily DKK66_18570 PF00267 Gram-negative porin DKK66_18575 PF00440 Bacterial regulatory proteins, tetR family DKK66_18575 PF08360 QacR-like protein, C-terminal region DKK66_18580 PF07690 Major Facilitator Superfamily DKK66_18600 PF01488 Shikimate / quinate 5-dehydrogenase DKK66_18600 PF08501 Shikimate dehydrogenase substrate binding domain DKK66_18600 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DKK66_18615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKK66_18620 PF08501 Shikimate dehydrogenase substrate binding domain DKK66_18620 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DKK66_18625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKK66_18630 PF01261 Xylose isomerase-like TIM barrel DKK66_18635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_18635 PF03466 LysR substrate binding domain DKK66_18645 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DKK66_18650 PF00248 Aldo/keto reductase family DKK66_18660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DKK66_18665 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DKK66_18670 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DKK66_18675 PF04909 Amidohydrolase DKK66_18680 PF03737 Aldolase/RraA DKK66_18685 PF04909 Amidohydrolase DKK66_18690 PF04303 PrpF protein DKK66_18695 PF09339 IclR helix-turn-helix domain DKK66_18695 PF01614 Bacterial transcriptional regulator DKK66_18700 PF00672 HAMP domain DKK66_18700 PF17202 Single cache domain 3 DKK66_18700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_18705 PF13419 Haloacid dehalogenase-like hydrolase DKK66_18710 PF16671 Actin cross-linking domain DKK66_18710 PF04717 Type VI secretion system, phage-baseplate injector DKK66_18765 PF01546 Peptidase family M20/M25/M40 DKK66_18765 PF07687 Peptidase dimerisation domain DKK66_18770 PF00296 Luciferase-like monooxygenase DKK66_18775 PF00296 Luciferase-like monooxygenase DKK66_18780 PF00267 Gram-negative porin DKK66_18795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKK66_18800 PF00072 Response regulator receiver domain DKK66_18805 PF00072 Response regulator receiver domain DKK66_18805 PF01627 Hpt domain DKK66_18805 PF00512 His Kinase A (phospho-acceptor) domain DKK66_18805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKK66_18810 PF13188 PAS domain DKK66_18810 PF00563 EAL domain DKK66_18810 PF03707 Bacterial signalling protein N terminal repeat DKK66_18810 PF00990 Diguanylate cyclase, GGDEF domain DKK66_18820 PF00390 Malic enzyme, N-terminal domain DKK66_18820 PF03949 Malic enzyme, NAD binding domain DKK66_18820 PF01515 Phosphate acetyl/butaryl transferase DKK66_18825 PF00672 HAMP domain DKK66_18825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_18825 PF16591 Helical bimodular sensor domain DKK66_18830 PF17158 Membrane-associated sensor, integral membrane domain DKK66_18830 PF00990 Diguanylate cyclase, GGDEF domain DKK66_18835 PF03466 LysR substrate binding domain DKK66_18835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_18850 PF00990 Diguanylate cyclase, GGDEF domain DKK66_18850 PF00072 Response regulator receiver domain DKK66_18875 PF01037 Lrp/AsnC ligand binding domain DKK66_18880 PF08240 Alcohol dehydrogenase GroES-like domain DKK66_18880 PF00107 Zinc-binding dehydrogenase DKK66_18885 PF03466 LysR substrate binding domain DKK66_18885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_18895 PF12848 ABC transporter DKK66_18895 PF00005 ABC transporter DKK66_18910 PF00072 Response regulator receiver domain DKK66_18910 PF02954 Bacterial regulatory protein, Fis family DKK66_18910 PF00158 Sigma-54 interaction domain DKK66_18940 PF03150 Di-haem cytochrome c peroxidase DKK66_18940 PF00034 Cytochrome c DKK66_18950 PF07715 TonB-dependent Receptor Plug Domain DKK66_18950 PF00593 TonB dependent receptor DKK66_18960 PF04542 Sigma-70 region 2 DKK66_18960 PF08281 Sigma-70, region 4 DKK66_18965 PF00072 Response regulator receiver domain DKK66_18970 PF08173 Membrane bound YbgT-like protein DKK66_18975 PF02322 Cytochrome bd terminal oxidase subunit II DKK66_18980 PF01654 Cytochrome bd terminal oxidase subunit I DKK66_18995 PF01497 Periplasmic binding protein DKK66_19000 PF01032 FecCD transport family DKK66_19005 PF00005 ABC transporter DKK66_19020 PF07702 UTRA domain DKK66_19020 PF00392 Bacterial regulatory proteins, gntR family DKK66_19030 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_19040 PF00005 ABC transporter DKK66_19045 PF03561 Allantoicase repeat DKK66_19050 PF04115 Ureidoglycolate lyase DKK66_19060 PF01451 Low molecular weight phosphotyrosine protein phosphatase DKK66_19065 PF01758 Sodium Bile acid symporter family DKK66_19070 PF06953 Arsenical resistance operon trans-acting repressor ArsD DKK66_19075 PF02374 Anion-transporting ATPase DKK66_19080 PF07883 Cupin domain DKK66_19080 PF12833 Helix-turn-helix domain DKK66_19085 PF01494 FAD binding domain DKK66_19115 PF01494 FAD binding domain DKK66_19140 PF03466 LysR substrate binding domain DKK66_19140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKK66_19145 PF00950 ABC 3 transport family DKK66_19150 PF00005 ABC transporter DKK66_19155 PF01297 Zinc-uptake complex component A periplasmic DKK66_19165 PF07683 Cobalamin synthesis protein cobW C-terminal domain DKK66_19165 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKK66_19170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_19175 PF00171 Aldehyde dehydrogenase family DKK66_19190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKK66_19190 PF02770 Acyl-CoA dehydrogenase, middle domain DKK66_19190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKK66_19195 PF01012 Electron transfer flavoprotein domain DKK66_19195 PF00766 Electron transfer flavoprotein FAD-binding domain DKK66_19200 PF01012 Electron transfer flavoprotein domain DKK66_19220 PF00145 C-5 cytosine-specific DNA methylase DKK66_19230 PF01810 LysE type translocator DKK66_19255 PF00795 Carbon-nitrogen hydrolase DKK66_19255 PF02540 NAD synthase DKK66_19265 PF03548 Outer membrane lipoprotein carrier protein LolA DKK66_19275 PF12002 MgsA AAA+ ATPase C terminal DKK66_19275 PF00004 ATPase family associated with various cellular activities (AAA) DKK66_19275 PF16193 AAA C-terminal domain DKK66_19280 PF02403 Seryl-tRNA synthetase N-terminal domain DKK66_19280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DKK66_19285 PF01510 N-acetylmuramoyl-L-alanine amidase DKK66_19290 PF00378 Enoyl-CoA hydratase/isomerase DKK66_19300 PF01297 Zinc-uptake complex component A periplasmic DKK66_19305 PF00950 ABC 3 transport family DKK66_19310 PF00005 ABC transporter DKK66_19315 PF07683 Cobalamin synthesis protein cobW C-terminal domain DKK66_19315 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKK66_19320 PF01475 Ferric uptake regulator family DKK66_19340 PF00579 tRNA synthetases class I (W and Y) DKK66_19340 PF01479 S4 domain DKK66_19345 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKK66_19345 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKK66_19350 PF01261 Xylose isomerase-like TIM barrel DKK66_19355 PF00271 Helicase conserved C-terminal domain DKK66_19355 PF00270 DEAD/DEAH box helicase DKK66_19360 PF00557 Metallopeptidase family M24 DKK66_19360 PF01321 Creatinase/Prolidase N-terminal domain DKK66_19365 PF03485 Arginyl tRNA synthetase N terminal domain DKK66_19365 PF05746 DALR anticodon binding domain DKK66_19365 PF00750 tRNA synthetases class I (R) DKK66_19375 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_19380 PF00528 Binding-protein-dependent transport system inner membrane component DKK66_19385 PF13416 Bacterial extracellular solute-binding protein DKK66_19405 PF04305 Protein of unknown function (DUF455) DKK66_19410 PF02623 FliW protein DKK66_19415 PF03352 Methyladenine glycosylase DKK66_19425 PF00209 Sodium:neurotransmitter symporter family DKK66_19430 PF07687 Peptidase dimerisation domain DKK66_19430 PF01546 Peptidase family M20/M25/M40 DKK66_19460 PF01434 Peptidase family M41 DKK66_19460 PF17862 AAA+ lid domain DKK66_19460 PF00004 ATPase family associated with various cellular activities (AAA) DKK66_19465 PF02899 Phage integrase, N-terminal SAM-like domain DKK66_19465 PF00589 Phage integrase family DKK66_19470 PF01546 Peptidase family M20/M25/M40 DKK66_19470 PF07687 Peptidase dimerisation domain DKK66_19480 PF00563 EAL domain DKK66_19480 PF08448 PAS fold DKK66_19480 PF00990 Diguanylate cyclase, GGDEF domain DKK66_19485 PF00664 ABC transporter transmembrane region DKK66_19485 PF00005 ABC transporter DKK66_19490 PF04379 ApaG domain DKK66_19495 PF00834 Ribulose-phosphate 3 epimerase family DKK66_19500 PF00106 short chain dehydrogenase DKK66_19505 PF13419 Haloacid dehalogenase-like hydrolase DKK66_19510 PF04715 Anthranilate synthase component I, N terminal region DKK66_19510 PF00425 chorismate binding enzyme DKK66_19525 PF10145 Phage-related minor tail protein DKK66_19525 PF01464 Transglycosylase SLT domain DKK66_19525 PF01551 Peptidase family M23 DKK66_19535 PF01966 HD domain DKK66_19535 PF01743 Poly A polymerase head domain DKK66_19535 PF12627 Probable RNA and SrmB- binding site of polymerase A DKK66_19550 PF08032 RNA 2'-O ribose methyltransferase substrate binding DKK66_19550 PF00588 SpoU rRNA Methylase family DKK66_19565 PF00691 OmpA family DKK66_19565 PF13677 Membrane MotB of proton-channel complex MotA/MotB DKK66_19570 PF01618 MotA/TolQ/ExbB proton channel family DKK66_19575 PF00202 Aminotransferase class-III DKK66_19580 PF00120 Glutamine synthetase, catalytic domain DKK66_19585 PF07722 Peptidase C26 DKK66_19590 PF01381 Helix-turn-helix DKK66_19590 PF07883 Cupin domain DKK66_19595 PF00171 Aldehyde dehydrogenase family DKK66_19600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DKK66_19600 PF00672 HAMP domain DKK66_19600 PF02743 Cache domain DKK66_19610 PF04461 Protein of unknown function (DUF520) DKK66_19615 PF01810 LysE type translocator DKK66_19625 PF00764 Arginosuccinate synthase DKK66_19630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DKK66_19630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DKK66_19635 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DKK66_19635 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DKK66_19635 PF01276 Orn/Lys/Arg decarboxylase, major domain DKK66_19640 PF13307 Helicase C-terminal domain DKK66_19640 PF06733 DEAD_2 DKK66_19650 PF00267 Gram-negative porin DKK66_19655 PF00557 Metallopeptidase family M24 DKK66_19660 PF00669 Bacterial flagellin N-terminal helical region DKK66_19660 PF00700 Bacterial flagellin C-terminal helical region DKK66_19665 PF01272 Transcription elongation factor, GreA/GreB, C-term DKK66_19665 PF14760 Rnk N-terminus DKK66_19670 PF00561 alpha/beta hydrolase fold DKK66_19680 PF00772 DnaB-like helicase N terminal domain DKK66_19680 PF03796 DnaB-like helicase C terminal domain DKK66_19690 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DKK66_19690 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DKK66_19695 PF05698 Bacterial trigger factor protein (TF) C-terminus DKK66_19710 PF00216 Bacterial DNA-binding protein DKK66_19715 PF00004 ATPase family associated with various cellular activities (AAA) DKK66_19715 PF02190 ATP-dependent protease La (LON) substrate-binding domain DKK66_19715 PF05362 Lon protease (S16) C-terminal proteolytic domain DKK66_19720 PF10431 C-terminal, D2-small domain, of ClpB protein DKK66_19720 PF07724 AAA domain (Cdc48 subfamily) DKK66_19720 PF06689 ClpX C4-type zinc finger DKK66_19725 PF00574 Clp protease DKK66_19730 PF05697 Bacterial trigger factor protein (TF) DKK66_19730 PF05698 Bacterial trigger factor protein (TF) C-terminus DKK66_19730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKK66_19780 PF05406 WGR domain DKK66_19785 PF00717 Peptidase S24-like DKK66_20005 PF05772 NinB protein DKK66_20010 PF03796 DnaB-like helicase C terminal domain DKK66_20010 PF00772 DnaB-like helicase N terminal domain DKK66_20140 PF00589 Phage integrase family