locus-tag	class	description
J5A61_00010	COG1121	(ABC) transporter
J5A61_00015	COG0803	Belongs to the bacterial solute-binding protein 9 family
J5A61_00090	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
J5A61_00095	COG0205	6-phosphofructokinase activity
J5A61_00120	COG1131	(ABC) transporter
J5A61_00130	COG0667	Aldo Keto reductase
J5A61_00150	COG1131	(ABC) transporter
J5A61_00195	COG0316	Belongs to the HesB IscA family
J5A61_00195	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
J5A61_00215	COG0561	phosphatase activity
J5A61_00245	COG2814	Major facilitator Superfamily
J5A61_00250	COG0640	Transcriptional regulator
J5A61_00270	COG3739	integral membrane protein
J5A61_00275	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J5A61_00285	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
J5A61_00405	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
J5A61_00420	COG0617	tRNA 3'-terminal CCA addition
J5A61_00425	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J5A61_00430	COG1116	anion transmembrane transporter activity
J5A61_00455	COG1120	ATPase activity
J5A61_00460	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_00465	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5A61_00495	COG1309	transcriptional regulator
J5A61_00505	COG0667	Aldo Keto reductase
J5A61_00525	COG0673	inositol 2-dehydrogenase activity
J5A61_00530	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J5A61_00535	COG2197	response regulator
J5A61_00590	COG3718	enzyme involved in inositol metabolism
J5A61_00595	COG3962	Belongs to the TPP enzyme family
J5A61_00635	COG1175	transmembrane transport
J5A61_00640	COG0395	ABC-type sugar transport system, permease component
J5A61_00665	COG0456	acetyltransferase
J5A61_00680	COG1902	pentaerythritol trinitrate reductase activity
J5A61_00700	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5A61_00705	COG0673	inositol 2-dehydrogenase activity
J5A61_00720	COG1172	Belongs to the binding-protein-dependent transport system permease family
J5A61_00725	COG1879	ABC-type sugar transport system periplasmic component
J5A61_00730	COG1609	Transcriptional regulator
J5A61_00765	COG1172	Belongs to the binding-protein-dependent transport system permease family
J5A61_00780	COG3022	response to hydroperoxide
J5A61_00795	COG0438	transferase activity, transferring glycosyl groups
J5A61_00800	COG1132	(ABC) transporter
J5A61_00815	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
J5A61_00825	COG5002	protein histidine kinase activity
J5A61_00830	COG0745	RESPONSE REGULATOR receiver
J5A61_00855	COG1404	Belongs to the peptidase S8 family
J5A61_00860	COG3266	domain, Protein
J5A61_00890	COG1674	ftsk spoiiie
J5A61_00945	COG1136	(ABC) transporter
J5A61_00950	COG1131	(ABC) transporter
J5A61_00965	COG0673	inositol 2-dehydrogenase activity
J5A61_01040	COG0673	inositol 2-dehydrogenase activity
J5A61_01065	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
J5A61_01080	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
J5A61_01090	COG0577	efflux transmembrane transporter activity
J5A61_01090	COG1136	(ABC) transporter
J5A61_01105	COG1309	transcriptional regulator
J5A61_01115	COG1132	(ABC) transporter
J5A61_01115	COG2375	cellular response to nickel ion
J5A61_01120	COG1122	ATPase activity
J5A61_01130	COG1129	ABC transporter
J5A61_01140	COG0305	Participates in initiation and elongation during chromosome replication
J5A61_01150	COG1937	Protein conserved in bacteria
J5A61_01165	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J5A61_01170	COG0477	Major facilitator Superfamily
J5A61_01190	COG2197	response regulator
J5A61_01195	COG4585	Histidine kinase
J5A61_01200	COG1131	(ABC) transporter
J5A61_01210	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
J5A61_01215	COG4988	ABC transporter
J5A61_01240	COG1294	oxidase, subunit
J5A61_01245	COG1271	oxidase subunit
J5A61_01255	COG2801	Transposase and inactivated derivatives
J5A61_01295	COG0300	oxidoreductase activity
J5A61_01305	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
J5A61_01315	COG1027	Aspartate ammonia-lyase
J5A61_01320	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
J5A61_01325	COG1940	carbohydrate kinase activity
J5A61_01335	COG1175	transmembrane transport
J5A61_01340	COG0395	ABC-type sugar transport system, permease component
J5A61_01345	COG1940	carbohydrate kinase activity
J5A61_01375	COG0366	Alpha amylase catalytic
J5A61_01405	COG2205	protein histidine kinase activity
J5A61_01435	COG0022	dehydrogenase e1 component
J5A61_01440	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5A61_01450	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J5A61_01460	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
J5A61_01480	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
J5A61_01485	COG0561	phosphatase activity
J5A61_01580	COG0494	nUDIX hydrolase
J5A61_01630	COG2197	response regulator
J5A61_01635	COG0577	efflux transmembrane transporter activity
J5A61_01635	COG1136	(ABC) transporter
J5A61_01640	COG0577	efflux transmembrane transporter activity
J5A61_01640	COG1136	(ABC) transporter
J5A61_01695	COG2226	methyltransferase
J5A61_01730	COG2197	response regulator
J5A61_01750	COG1205	dead DEAH box helicase
J5A61_01750	COG1111	helicase
J5A61_01770	COG1648	precorrin-2 dehydrogenase activity
J5A61_01770	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J5A61_01825	COG1132	(ABC) transporter
J5A61_01860	COG0406	alpha-ribazole phosphatase activity
J5A61_01870	COG1595	DNA-templated transcription, initiation
J5A61_01875	COG1252	NADH dehydrogenase
J5A61_01885	COG0302	gtp cyclohydrolase
J5A61_01890	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
J5A61_01895	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
J5A61_01925	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
J5A61_01940	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
J5A61_01950	COG1082	Xylose isomerase domain protein TIM barrel
J5A61_01975	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
J5A61_01990	COG0406	alpha-ribazole phosphatase activity
J5A61_02000	COG1028	Short-chain dehydrogenase reductase Sdr
J5A61_02015	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J5A61_02030	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
J5A61_02045	COG1401	restriction endodeoxyribonuclease activity
J5A61_02060	COG0406	alpha-ribazole phosphatase activity
J5A61_02060	COG0494	nUDIX hydrolase
J5A61_02065	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
J5A61_02070	COG0456	acetyltransferase
J5A61_02075	COG0745	RESPONSE REGULATOR receiver
J5A61_02085	COG1490	D-aminoacyl-tRNA deacylase activity
J5A61_02090	COG3485	protocatechuate 3,4-dioxygenase
J5A61_02095	COG0354	folic acid binding
J5A61_02115	COG2326	polyphosphate kinase activity
J5A61_02130	COG0583	DNA-binding transcription factor activity
J5A61_02160	COG1217	gtp-binding protein TYPA
J5A61_02180	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J5A61_02185	COG1461	Dihydroxyacetone kinase
J5A61_02190	COG2376	Dihydroxyacetone kinase
J5A61_02195	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J5A61_02210	COG3189	MarR family transcriptional regulator
J5A61_02240	COG0151	Belongs to the GarS family
J5A61_02245	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
J5A61_02265	COG1668	transmembrane transport
J5A61_02270	COG4152	abc transporter atp-binding protein
J5A61_02275	COG2197	response regulator
J5A61_02280	COG4585	Histidine kinase
J5A61_02285	COG1136	(ABC) transporter
J5A61_02285	COG0577	efflux transmembrane transporter activity
J5A61_02295	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J5A61_02310	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J5A61_02315	COG0047	phosphoribosylformylglycinamidine synthase activity
J5A61_02325	COG1051	belongs to the nudix hydrolase family
J5A61_02335	COG0427	acetyl-CoA hydrolase
J5A61_02345	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J5A61_02350	COG4115	mRNA cleavage
J5A61_02370	COG4585	Histidine kinase
J5A61_02380	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
J5A61_02395	COG1331	Highly conserved protein containing a thioredoxin domain
J5A61_02405	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5A61_02410	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J5A61_02440	COG1012	belongs to the aldehyde dehydrogenase family
J5A61_02445	COG1028	Short-chain dehydrogenase reductase Sdr
J5A61_02465	COG2814	Major facilitator Superfamily
J5A61_02470	COG1309	transcriptional regulator
J5A61_02495	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5A61_02495	COG0785	Cytochrome C biogenesis protein
J5A61_02505	COG5002	protein histidine kinase activity
J5A61_02515	COG0133	tryptophan synthase activity
J5A61_02520	COG2233	PERMEase
J5A61_02550	COG0084	hydrolase, TatD family'
J5A61_02555	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J5A61_02560	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
J5A61_02575	COG0577	efflux transmembrane transporter activity
J5A61_02575	COG1136	(ABC) transporter
J5A61_02590	COG0519	Catalyzes the synthesis of GMP from XMP
J5A61_02610	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
J5A61_02615	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J5A61_02630	COG1136	(ABC) transporter
J5A61_02630	COG0577	efflux transmembrane transporter activity
J5A61_02635	COG0577	efflux transmembrane transporter activity
J5A61_02635	COG1136	(ABC) transporter
J5A61_02645	COG1131	(ABC) transporter
J5A61_02660	COG2094	Belongs to the DNA glycosylase MPG family
J5A61_02670	COG0583	DNA-binding transcription factor activity
J5A61_02690	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
J5A61_02695	COG0193	aminoacyl-tRNA hydrolase activity
J5A61_02720	COG2304	oxidoreductase activity
J5A61_02730	COG0148	phosphopyruvate hydratase activity
J5A61_02755	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
J5A61_02755	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
J5A61_02760	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J5A61_02765	COG3831	ATPase activity
J5A61_02790	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J5A61_02800	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
J5A61_02805	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J5A61_02810	COG2188	Transcriptional regulator
J5A61_02820	COG0095	Lipoate-protein ligase
J5A61_02835	COG0745	RESPONSE REGULATOR receiver
J5A61_02840	COG4191	Histidine kinase
J5A61_02860	COG0765	amino acid transport
J5A61_02875	COG1468	defense response to virus
J5A61_02875	COG1518	maintenance of DNA repeat elements
J5A61_02885	COG1203	CRISPR-associated helicase, Cas3
J5A61_02905	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
J5A61_02910	COG3591	Belongs to the peptidase S1B family
J5A61_02955	COG1349	DNA-binding transcription factor activity
J5A61_02960	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5A61_02965	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5A61_02970	COG0022	dehydrogenase e1 component
J5A61_02980	COG1028	Short-chain dehydrogenase reductase Sdr
J5A61_03005	COG1373	ATPase (AAA superfamily
J5A61_03010	COG2376	Dihydroxyacetone kinase
J5A61_03015	COG1063	alcohol dehydrogenase
J5A61_03030	COG1113	amino acid transport
J5A61_03035	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J5A61_03045	COG1472	Belongs to the glycosyl hydrolase 3 family
J5A61_03055	COG0657	acetylesterase activity
J5A61_03055	COG2755	lipolytic protein G-D-S-L family
J5A61_03060	COG0823	Involved in the tonB-independent uptake of proteins
J5A61_03060	COG4946	Tricorn protease homolog
J5A61_03060	COG1506	peptidase
J5A61_03115	COG0038	chloride channel
J5A61_03120	COG0588	phosphoglycerate mutase activity
J5A61_03125	COG0726	polysaccharide deacetylase
J5A61_03130	COG0704	Plays a role in the regulation of phosphate uptake
J5A61_03135	COG5002	protein histidine kinase activity
J5A61_03140	COG0745	RESPONSE REGULATOR receiver
J5A61_03145	COG1329	Transcriptional regulator
J5A61_03150	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
J5A61_03155	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
J5A61_03200	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J5A61_03210	COG2375	cellular response to nickel ion
J5A61_03210	COG1132	(ABC) transporter
J5A61_03220	COG0789	Transcriptional regulator
J5A61_03225	COG0698	ribose 5-phosphate isomerase
J5A61_03235	COG0215	cysteine-tRNA ligase activity
J5A61_03240	COG2226	methyltransferase
J5A61_03250	COG3541	Predicted nucleotidyltransferase
J5A61_03265	COG1882	Formate acetyltransferase
J5A61_03270	COG0626	cystathionine gamma-synthase activity
J5A61_03275	COG3842	ATPase activity
J5A61_03290	COG0275	rRNA processing
J5A61_03315	COG0454	-acetyltransferase
J5A61_03330	COG3142	Participates in the control of copper homeostasis
J5A61_03335	COG0494	nUDIX hydrolase
J5A61_03345	COG0363	glucosamine-6-phosphate deaminase activity
J5A61_03350	COG1278	Cold shock
J5A61_03360	COG2252	PERMEase
J5A61_03385	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
J5A61_03400	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
J5A61_03420	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5A61_03430	COG1013	pyruvate-flavodoxin oxidoreductase activity
J5A61_03430	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
J5A61_03430	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
J5A61_03430	COG0674	pyruvate-flavodoxin oxidoreductase activity
J5A61_03450	COG0517	IMP dehydrogenase activity
J5A61_03450	COG1125	glycine betaine transport
J5A61_03460	COG1174	glycine betaine transport
J5A61_03470	COG0477	Major facilitator Superfamily
J5A61_03480	COG0156	8-amino-7-oxononanoate synthase activity
J5A61_03490	COG0604	alcohol dehydrogenase
J5A61_03515	COG3048	D-serine ammonia-lyase activity
J5A61_03540	COG1304	FMN binding
J5A61_03560	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_03565	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_03570	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J5A61_03575	COG1120	ATPase activity
J5A61_03615	COG1140	nitrate reductase beta subunit
J5A61_03645	COG0315	cyclic pyranopterin monophosphate synthase activity
J5A61_03650	COG0746	molybdenum cofactor guanylyltransferase activity
J5A61_03660	COG1609	Transcriptional regulator
J5A61_03680	COG1172	Belongs to the binding-protein-dependent transport system permease family
J5A61_03720	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_03725	COG1120	ATPase activity
J5A61_03750	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
J5A61_03830	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
J5A61_03840	COG2986	histidine ammonia-lyase
J5A61_03850	COG0366	Alpha amylase catalytic
J5A61_03885	COG1131	(ABC) transporter
J5A61_03905	COG1846	Transcriptional regulator
J5A61_03920	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
J5A61_03925	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
J5A61_03940	COG4721	ABC-type cobalt transport system, permease component
J5A61_03945	COG3845	ABC transporter
J5A61_03990	COG1263	PTS System
J5A61_03990	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5A61_03990	COG2190	(PTS) system
J5A61_03995	COG1404	Belongs to the peptidase S8 family
J5A61_04005	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J5A61_04005	COG0574	Belongs to the PEP-utilizing enzyme family
J5A61_04015	COG1120	ATPase activity
J5A61_04020	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_04030	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J5A61_04030	COG0351	phosphomethylpyrimidine kinase
J5A61_04030	COG0352	thiamine-phosphate diphosphorylase activity
J5A61_04035	COG0351	phosphomethylpyrimidine kinase
J5A61_04040	COG0351	phosphomethylpyrimidine kinase
J5A61_04040	COG0352	thiamine-phosphate diphosphorylase activity
J5A61_04040	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J5A61_04050	COG1404	Belongs to the peptidase S8 family
J5A61_04110	COG0514	ATP-dependent DNA helicase (RecQ)
J5A61_04115	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
J5A61_04120	COG0542	response to heat
J5A61_04150	COG5012	cobalamin binding
J5A61_04165	COG1113	amino acid transport
J5A61_04170	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5A61_04175	COG0534	Mate efflux family protein
J5A61_04200	COG0714	Associated with various cellular activities
J5A61_04220	COG0515	serine threonine protein kinase
J5A61_04220	COG2815	serine threonine protein kinase
J5A61_04235	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
J5A61_04240	COG1704	LemA family
J5A61_04260	COG0191	fructose-bisphosphate aldolase activity
J5A61_04270	COG1172	Belongs to the binding-protein-dependent transport system permease family
J5A61_04285	COG1070	Carbohydrate kinase
J5A61_04290	COG1609	Transcriptional regulator
J5A61_04310	COG1045	serine acetyltransferase
J5A61_04315	COG4770	biotin carboxylase activity
J5A61_04360	COG0424	maF-like protein
J5A61_04370	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J5A61_04400	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
J5A61_04410	COG1316	TRANSCRIPTIONal
J5A61_04470	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5A61_04475	COG2835	tetraacyldisaccharide 4'-kinase activity
J5A61_04485	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
J5A61_04525	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
J5A61_04530	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
J5A61_04535	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
J5A61_04540	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
J5A61_04545	COG0714	Associated with various cellular activities
J5A61_04560	COG3552	Protein containing von Willebrand factor type A (VWA) domain
J5A61_04565	COG2425	protein containing a von Willebrand factor type A (vWA) domain
J5A61_04580	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J5A61_04600	COG0156	8-amino-7-oxononanoate synthase activity
J5A61_04605	COG1063	alcohol dehydrogenase
J5A61_04615	COG0259	pyridoxamine-phosphate oxidase activity
J5A61_04635	COG1739	Uncharacterized protein family UPF0029
J5A61_04665	COG1053	succinate dehydrogenase
J5A61_04675	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
J5A61_04695	COG0431	NADPH-dependent FMN reductase
J5A61_04710	COG0246	Mannitol dehydrogenase
J5A61_04715	COG0189	ligase activity
J5A61_04725	COG0189	ligase activity
J5A61_04735	COG1073	alpha beta
J5A61_04745	COG0789	Transcriptional regulator
J5A61_04755	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5A61_04760	COG3321	synthase
J5A61_04780	COG2070	2-Nitropropane dioxygenase
J5A61_04780	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J5A61_04785	COG1024	Enoyl-CoA hydratase
J5A61_04790	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5A61_04790	COG1028	Short-chain dehydrogenase reductase Sdr
J5A61_04790	COG3321	synthase
J5A61_04790	COG4221	oxidoreductase activity
J5A61_04795	COG1028	Short-chain dehydrogenase reductase Sdr
J5A61_04795	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5A61_04795	COG3321	synthase
J5A61_04795	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5A61_04795	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J5A61_04800	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5A61_04800	COG0300	oxidoreductase activity
J5A61_04800	COG3321	synthase
J5A61_04800	COG4221	oxidoreductase activity
J5A61_04805	COG4221	oxidoreductase activity
J5A61_04805	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5A61_04805	COG0300	oxidoreductase activity
J5A61_04805	COG3321	synthase
J5A61_04810	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5A61_04810	COG0300	oxidoreductase activity
J5A61_04810	COG4221	oxidoreductase activity
J5A61_04810	COG3321	synthase
J5A61_04815	COG0604	alcohol dehydrogenase
J5A61_04815	COG3321	synthase
J5A61_04820	COG3425	synthase
J5A61_04825	COG1024	Enoyl-CoA hydratase
J5A61_04840	COG1131	(ABC) transporter
J5A61_04880	COG0252	asparaginase activity
J5A61_04915	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
J5A61_04935	COG1160	GTP binding
J5A61_04945	COG0322	excinuclease ABC activity
J5A61_04950	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
J5A61_04960	COG1268	BioY protein
J5A61_04965	COG1122	ATPase activity
J5A61_04975	COG1660	Displays ATPase and GTPase activities
J5A61_04980	COG0391	Required for morphogenesis under gluconeogenic growth conditions
J5A61_04990	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J5A61_04995	COG0126	phosphoglycerate kinase activity
J5A61_05000	COG0149	triose-phosphate isomerase activity
J5A61_05005	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J5A61_05030	COG0363	glucosamine-6-phosphate deaminase activity
J5A61_05070	COG0396	ATPase activity
J5A61_05075	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J5A61_05080	COG0822	iron-sulfur transferase activity
J5A61_05090	COG2267	carboxylic ester hydrolase activity
J5A61_05110	COG0488	(ABC) transporter
J5A61_05115	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5A61_05135	COG1028	Short-chain dehydrogenase reductase Sdr
J5A61_05145	COG1119	ATPase activity
J5A61_05150	COG0114	fumarate hydratase activity
J5A61_05180	COG0242	peptide deformylase activity
J5A61_05185	COG4974	Belongs to the 'phage' integrase family
J5A61_05190	COG1196	nuclear chromosome segregation
J5A61_05190	COG0741	lytic transglycosylase activity
J5A61_05190	COG0739	heme binding
J5A61_05195	COG0052	Belongs to the universal ribosomal protein uS2 family
J5A61_05200	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
J5A61_05205	COG0528	UMP kinase activity
J5A61_05210	COG0233	cytoplasmic translational termination
J5A61_05215	COG0575	Belongs to the CDS family
J5A61_05220	COG0820	rRNA (adenine-C2-)-methyltransferase activity
J5A61_05225	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J5A61_05230	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
J5A61_05235	COG0750	zinc metalloprotease
J5A61_05240	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
J5A61_05250	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
J5A61_05255	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
J5A61_05260	COG1492	cobalamin metabolic process
J5A61_05265	COG2826	transposase and inactivated derivatives, IS30 family
J5A61_05275	COG1253	flavin adenine dinucleotide binding
J5A61_05285	COG1744	ABC transporter substrate-binding protein PnrA-like
J5A61_05290	COG3845	ABC transporter
J5A61_05295	COG4603	Belongs to the binding-protein-dependent transport system permease family
J5A61_05300	COG1079	Belongs to the binding-protein-dependent transport system permease family
J5A61_05310	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J5A61_05315	COG0328	RNA-DNA hybrid ribonuclease activity
J5A61_05325	COG0823	Involved in the tonB-independent uptake of proteins
J5A61_05325	COG1506	peptidase
J5A61_05325	COG4946	Tricorn protease homolog
J5A61_05330	COG1131	(ABC) transporter
J5A61_05340	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5A61_05355	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5A61_05370	COG0584	glycerophosphoryl diester phosphodiesterase
J5A61_05380	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
J5A61_05405	COG0714	Associated with various cellular activities
J5A61_05415	COG3552	Protein containing von Willebrand factor type A (VWA) domain
J5A61_05450	COG1342	Belongs to the UPF0251 family
J5A61_05460	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
J5A61_05475	COG0616	signal peptide processing
J5A61_05515	COG2171	N-acyltransferase activity
J5A61_05520	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J5A61_05540	COG0297	glycogen (starch) synthase activity
J5A61_05545	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J5A61_05560	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J5A61_05565	COG1595	DNA-templated transcription, initiation
J5A61_05575	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J5A61_05610	COG0006	proline dipeptidase activity
J5A61_05620	COG0557	exoribonuclease II activity
J5A61_05660	COG0174	glutamine synthetase
J5A61_05670	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
J5A61_05675	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J5A61_05680	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J5A61_05685	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J5A61_05690	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5A61_05700	COG1349	DNA-binding transcription factor activity
J5A61_05705	COG1063	alcohol dehydrogenase
J5A61_05710	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5A61_05710	COG2213	PTS system mannitol-specific
J5A61_05720	COG2409	Drug exporters of the RND superfamily
J5A61_05725	COG0174	glutamine synthetase
J5A61_05730	COG1131	(ABC) transporter
J5A61_05740	COG1476	TRANSCRIPTIONal
J5A61_05745	COG1309	transcriptional regulator
J5A61_05790	COG2188	Transcriptional regulator
J5A61_05795	COG0488	(ABC) transporter
J5A61_05805	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
J5A61_05810	COG0321	lipoyl(octanoyl) transferase activity
J5A61_05825	COG0310	cobalt ion transport
J5A61_05880	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
J5A61_05885	COG1797	cobyrinic acid a,c-diamide synthase activity
J5A61_05890	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J5A61_05890	COG1648	precorrin-2 dehydrogenase activity
J5A61_05905	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
J5A61_05910	COG0456	acetyltransferase
J5A61_05915	COG0442	prolyl-tRNA aminoacylation
J5A61_05925	COG0779	Required for maturation of 30S ribosomal subunits
J5A61_05930	COG0195	Participates in both transcription termination and antitermination
J5A61_05945	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
J5A61_05950	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J5A61_05955	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
J5A61_05960	COG2186	Transcriptional regulator
J5A61_05965	COG4139	cobalamin transport
J5A61_05980	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
J5A61_05985	COG4106	trans-aconitate 2-methyltransferase activity
J5A61_05990	COG1620	l-lactate permease
J5A61_05995	COG0247	lactate metabolic process
J5A61_06000	COG1139	Iron-sulfur cluster binding protein
J5A61_06005	COG1556	Lactate utilization protein
J5A61_06015	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J5A61_06020	COG1185	polyribonucleotide nucleotidyltransferase activity
J5A61_06025	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
J5A61_06035	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
J5A61_06040	COG0227	Belongs to the bacterial ribosomal protein bL28 family
J5A61_06055	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
J5A61_06060	COG1124	(ABC) transporter
J5A61_06065	COG4172	Belongs to the ABC transporter superfamily
J5A61_06070	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5A61_06075	COG0601	transmembrane transport
J5A61_06085	COG0003	Pfam Anion-transporting ATPase
J5A61_06095	COG0003	Pfam Anion-transporting ATPase
J5A61_06100	COG1846	Transcriptional regulator
J5A61_06110	COG0333	Belongs to the bacterial ribosomal protein bL32 family
J5A61_06115	COG0571	ribonuclease III activity
J5A61_06120	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
J5A61_06130	COG1196	nuclear chromosome segregation
J5A61_06140	COG0640	Transcriptional regulator
J5A61_06150	COG2197	response regulator
J5A61_06160	COG4585	Histidine kinase
J5A61_06175	COG0616	signal peptide processing
J5A61_06185	COG0228	four-way junction DNA binding
J5A61_06190	COG1837	Belongs to the UPF0109 family
J5A61_06195	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
J5A61_06200	COG0336	Belongs to the RNA methyltransferase TrmD family
J5A61_06210	COG1053	succinate dehydrogenase
J5A61_06215	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J5A61_06220	COG0335	large ribosomal subunit rRNA binding
J5A61_06230	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
J5A61_06240	COG0792	nuclease activity
J5A61_06270	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J5A61_06280	COG0440	acetolactate synthase activity
J5A61_06285	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
J5A61_06290	COG0477	Major facilitator Superfamily
J5A61_06295	COG1061	Type III restriction enzyme res subunit
J5A61_06310	COG0473	3-isopropylmalate dehydrogenase activity
J5A61_06315	COG0179	Fumarylacetoacetate (FAA) hydrolase
J5A61_06340	COG2197	response regulator
J5A61_06365	COG1414	Transcriptional regulator
J5A61_06370	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
J5A61_06375	COG0066	3-isopropylmalate dehydratase activity
J5A61_06405	COG1181	Belongs to the D-alanine--D-alanine ligase family
J5A61_06415	COG3585	molybdate ion transport
J5A61_06420	COG1674	ftsk spoiiie
J5A61_06425	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J5A61_06450	COG2137	regulation of response to DNA damage stimulus
J5A61_06455	COG1418	mRNA catabolic process
J5A61_06460	COG2017	converts alpha-aldose to the beta-anomer
J5A61_06465	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J5A61_06475	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
J5A61_06480	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
J5A61_06485	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J5A61_06495	COG4942	peptidase
J5A61_06505	COG0747	negative chemotaxis
J5A61_06515	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5A61_06530	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J5A61_06535	COG0483	inositol monophosphate 1-phosphatase activity
J5A61_06540	COG1162	GTPase activity
J5A61_06545	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
J5A61_06555	COG1595	DNA-templated transcription, initiation
J5A61_06575	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
J5A61_06580	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5A61_06580	COG0567	Dehydrogenase, E1 component
J5A61_06605	COG0460	homoserine dehydrogenase
J5A61_06610	COG0083	homoserine kinase activity
J5A61_06620	COG0254	rRNA binding
J5A61_06625	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
J5A61_06630	COG2890	protein-(glutamine-N5) methyltransferase activity
J5A61_06640	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J5A61_06655	COG0356	it plays a direct role in the translocation of protons across the membrane
J5A61_06660	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J5A61_06665	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
J5A61_06670	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J5A61_06675	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
J5A61_06680	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
J5A61_06685	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J5A61_06690	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J5A61_06705	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J5A61_06710	COG0596	Alpha beta hydrolase
J5A61_06760	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J5A61_06765	COG1381	Involved in DNA repair and RecF pathway recombination
J5A61_06780	COG1120	ATPase activity
J5A61_06785	COG0803	Belongs to the bacterial solute-binding protein 9 family
J5A61_06800	COG1175	transmembrane transport
J5A61_06815	COG1940	carbohydrate kinase activity
J5A61_06820	COG0339	signal peptide processing
J5A61_06840	COG1136	(ABC) transporter
J5A61_06845	COG3851	Histidine kinase
J5A61_06850	COG2197	response regulator
J5A61_06855	COG0232	Belongs to the dGTPase family. Type 2 subfamily
J5A61_06860	COG1131	(ABC) transporter
J5A61_06870	COG4585	Histidine kinase
J5A61_06875	COG2197	response regulator
J5A61_06880	COG0358	DNA primase activity
J5A61_06885	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J5A61_06895	COG0406	alpha-ribazole phosphatase activity
J5A61_06990	COG0714	Associated with various cellular activities
J5A61_07000	COG2304	oxidoreductase activity
J5A61_07005	COG2304	oxidoreductase activity
J5A61_07025	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5A61_07030	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J5A61_07045	COG1653	transport
J5A61_07050	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
J5A61_07060	COG0205	6-phosphofructokinase activity
J5A61_07080	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
J5A61_07085	COG2884	Cell division ATP-binding protein ftsE
J5A61_07100	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
J5A61_07115	COG0366	Alpha amylase catalytic
J5A61_07120	COG1678	Uncharacterized ACR, COG1678
J5A61_07125	COG0745	RESPONSE REGULATOR receiver
J5A61_07130	COG5002	protein histidine kinase activity
J5A61_07135	COG5401	PFAM Sporulation and spore germination
J5A61_07145	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
J5A61_07150	COG0653	protein targeting
J5A61_07170	COG0613	PHP domain protein
J5A61_07175	COG0180	Tryptophanyl-tRNA synthetase
J5A61_07180	COG0513	Belongs to the DEAD box helicase family
J5A61_07195	COG1278	Cold shock
J5A61_07215	COG0187	DNA topoisomerase II activity
J5A61_07230	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J5A61_07255	COG1435	thymidine kinase activity
J5A61_07275	COG0756	dUTP diphosphatase activity
J5A61_07295	COG0569	domain protein
J5A61_07300	COG0531	amino acid
J5A61_07305	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J5A61_07310	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
J5A61_07315	COG0686	Belongs to the AlaDH PNT family
J5A61_07320	COG1113	amino acid transport
J5A61_07325	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
J5A61_07340	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J5A61_07380	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
J5A61_07410	COG1716	ATPase activity
J5A61_07430	COG1295	ribonuclease BN
J5A61_07450	COG0009	L-threonylcarbamoyladenylate synthase
J5A61_07460	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
J5A61_07470	COG1472	Belongs to the glycosyl hydrolase 3 family
J5A61_07475	COG4552	Acetyltransferase involved in intracellular survival and related
J5A61_07480	COG1937	Protein conserved in bacteria
J5A61_07490	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J5A61_07495	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
J5A61_07510	COG3030	protein affecting phage T7 exclusion by the F plasmid
J5A61_07515	COG1216	Glycosyl transferase, family 2
J5A61_07520	COG0815	Transfers the fatty acyl group on membrane lipoproteins
J5A61_07525	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J5A61_07525	COG2813	Specifically methylates the guanine in position
J5A61_07530	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J5A61_07540	COG2212	antiporter activity
J5A61_07545	COG1863	multisubunit Na H antiporter MnhE subunit
J5A61_07550	COG0651	ATP synthesis coupled electron transport
J5A61_07555	COG1006	Multisubunit Na H antiporter MnhC subunit
J5A61_07560	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J5A61_07560	COG2111	Na H antiporter
J5A61_07565	COG1376	ErfK ybiS ycfS ynhG family protein
J5A61_07580	COG0702	epimerase
J5A61_07590	COG1160	GTP binding
J5A61_07595	COG0488	(ABC) transporter
J5A61_07610	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
J5A61_07625	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J5A61_07630	COG1410	methionine synthase
J5A61_07630	COG0646	methionine synthase
J5A61_07660	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J5A61_07670	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J5A61_07680	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J5A61_07685	COG1758	RNA polymerase activity
J5A61_07690	COG0194	GDP metabolic process
J5A61_07700	COG0284	orotidine-5'-phosphate decarboxylase activity
J5A61_07705	COG0167	dihydroorotate dehydrogenase activity
J5A61_07710	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J5A61_07715	COG0505	Belongs to the CarA family
J5A61_07720	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J5A61_07725	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J5A61_07730	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
J5A61_07735	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
J5A61_07740	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
J5A61_07745	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
J5A61_07750	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J5A61_07755	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
J5A61_07760	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
J5A61_07780	COG2814	Major facilitator Superfamily
J5A61_07790	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
J5A61_07795	COG0124	histidyl-tRNA synthetase
J5A61_07805	COG1196	nuclear chromosome segregation
J5A61_07810	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J5A61_07820	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J5A61_07825	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J5A61_07830	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J5A61_07835	COG1862	Preprotein translocase
J5A61_07840	COG2255	four-way junction helicase activity
J5A61_07845	COG0632	four-way junction helicase activity
J5A61_07850	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
J5A61_07855	COG0217	transcriptional regulatory protein
J5A61_07860	COG0456	acetyltransferase
J5A61_07880	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
J5A61_07885	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
J5A61_07890	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J5A61_07895	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J5A61_07900	COG0131	Imidazoleglycerol-phosphate dehydratase
J5A61_07905	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J5A61_07910	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
J5A61_07920	COG0587	DNA-directed DNA polymerase activity
J5A61_07935	COG2197	response regulator
J5A61_07940	COG0577	efflux transmembrane transporter activity
J5A61_07940	COG1136	(ABC) transporter
J5A61_07955	COG3842	ATPase activity
J5A61_07970	COG1653	transport
J5A61_07975	COG0673	inositol 2-dehydrogenase activity
J5A61_07985	COG0159	tryptophan synthase activity
J5A61_07990	COG0133	tryptophan synthase activity
J5A61_07995	COG0134	indole-3-glycerol-phosphate synthase activity
J5A61_08000	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J5A61_08005	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
J5A61_08020	COG1690	Belongs to the RtcB family
J5A61_08030	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J5A61_08035	COG0154	amidase activity
J5A61_08040	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J5A61_08065	COG4585	Histidine kinase
J5A61_08070	COG2197	response regulator
J5A61_08095	COG0482	sulfurtransferase activity
J5A61_08115	COG0366	Alpha amylase catalytic
J5A61_08120	COG3281	Trehalose synthase
J5A61_08125	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
J5A61_08155	COG1408	metallophosphoesterase
J5A61_08160	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J5A61_08165	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J5A61_08175	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
J5A61_08185	COG1082	Xylose isomerase domain protein TIM barrel
J5A61_08220	COG0343	queuine tRNA-ribosyltransferase activity
J5A61_08235	COG0484	heat shock protein binding
J5A61_08240	COG1420	regulation of RNA biosynthetic process
J5A61_08250	COG0483	inositol monophosphate 1-phosphatase activity
J5A61_08265	COG1131	(ABC) transporter
J5A61_08275	COG4221	oxidoreductase activity
J5A61_08300	COG2318	DinB family
J5A61_08315	COG1175	transmembrane transport
J5A61_08330	COG0481	GTPase activity
J5A61_08335	COG0268	Binds directly to 16S ribosomal RNA
J5A61_08340	COG4868	Belongs to the UPF0371 family
J5A61_08375	COG2197	response regulator
J5A61_08380	COG0277	FAD linked oxidase domain protein
J5A61_08430	COG0640	Transcriptional regulator
J5A61_08435	COG2814	Major facilitator Superfamily
J5A61_08460	COG1131	(ABC) transporter
J5A61_08475	COG1760	l-serine dehydratase
J5A61_08480	COG2855	membrane
J5A61_08485	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
J5A61_08510	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
J5A61_08515	COG0113	porphobilinogen synthase activity
J5A61_08520	COG0181	hydroxymethylbilane synthase activity
J5A61_08525	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
J5A61_08530	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
J5A61_08535	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
J5A61_08565	COG0656	L-ascorbic acid biosynthetic process
J5A61_08595	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J5A61_08615	COG0799	negative regulation of ribosome biogenesis
J5A61_08620	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
J5A61_08625	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
J5A61_08630	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
J5A61_08635	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
J5A61_08640	COG0211	Belongs to the bacterial ribosomal protein bL27 family
J5A61_08645	COG0261	This protein binds to 23S rRNA in the presence of protein L20
J5A61_08650	COG1530	ribonuclease E activity
J5A61_08650	COG1530	ribonuclease E activity
J5A61_08665	COG0285	dihydrofolate synthase activity
J5A61_08680	COG0525	valine-tRNA ligase activity
J5A61_08685	COG0793	Belongs to the peptidase S41A family
J5A61_08685	COG4946	Tricorn protease homolog
J5A61_08690	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
J5A61_08695	COG0740	serine-type endopeptidase activity
J5A61_08700	COG0740	serine-type endopeptidase activity
J5A61_08710	COG0544	peptidyl-prolyl cis-trans isomerase activity
J5A61_08715	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J5A61_08735	COG1950	PFAM Membrane protein of
J5A61_08755	COG0586	Pfam SNARE associated Golgi protein
J5A61_08760	COG1349	DNA-binding transcription factor activity
J5A61_08765	COG0698	ribose 5-phosphate isomerase
J5A61_08775	COG0647	UMP catabolic process
J5A61_08780	COG1070	Carbohydrate kinase
J5A61_08785	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
J5A61_08820	COG0701	Predicted permease
J5A61_08850	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J5A61_08855	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J5A61_08865	COG0540	Belongs to the ATCase OTCase family
J5A61_08870	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
J5A61_08895	COG1201	RNA secondary structure unwinding
J5A61_08910	COG0583	DNA-binding transcription factor activity
J5A61_08920	COG1022	Amp-dependent synthetase and ligase
J5A61_08930	COG0277	FAD linked oxidase domain protein
J5A61_08970	COG2197	response regulator
J5A61_08975	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J5A61_08990	COG0556	nucleotide-excision repair
J5A61_08995	COG0237	dephospho-CoA kinase activity
J5A61_09005	COG0404	The glycine cleavage system catalyzes the degradation of glycine
J5A61_09010	COG0509	glycine decarboxylation via glycine cleavage system
J5A61_09015	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J5A61_09015	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J5A61_09020	COG0539	negative regulation of cytoplasmic translation
J5A61_09035	COG2050	protein possibly involved in aromatic compounds catabolism
J5A61_09050	COG0469	pyruvate kinase activity
J5A61_09080	COG1799	cell septum assembly
J5A61_09095	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J5A61_09100	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J5A61_09105	COG0772	Belongs to the SEDS family
J5A61_09110	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
J5A61_09115	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J5A61_09120	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J5A61_09125	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J5A61_09130	COG0768	penicillin binding
J5A61_09140	COG0275	rRNA processing
J5A61_09145	COG2001	Belongs to the MraZ family
J5A61_09150	COG0714	Associated with various cellular activities
J5A61_09180	COG1615	UPF0182 protein
J5A61_09190	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
J5A61_09230	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J5A61_09240	COG1946	Acyl-CoA thioesterase
J5A61_09245	COG1643	Atp-dependent helicase
J5A61_09270	COG0129	dihydroxy-acid dehydratase activity
J5A61_09280	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J5A61_09285	COG1333	cytochrome c biogenesis protein
J5A61_09290	COG0785	Cytochrome C biogenesis protein
J5A61_09300	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
J5A61_09310	COG0710	3-dehydroquinate dehydratase activity
J5A61_09315	COG1309	transcriptional regulator
J5A61_09320	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
J5A61_09330	COG0028	Belongs to the TPP enzyme family
J5A61_09340	COG1012	belongs to the aldehyde dehydrogenase family
J5A61_09345	COG0477	Major facilitator Superfamily
J5A61_09350	COG1053	succinate dehydrogenase
J5A61_09440	COG3609	addiction module antidote protein, CC2985 family
J5A61_09445	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J5A61_09450	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
J5A61_09460	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J5A61_09465	COG0537	adenosine 5'-monophosphoramidase activity
J5A61_09470	COG0107	imidazoleglycerol-phosphate synthase activity
J5A61_09475	COG4581	dead DEAH box helicase
J5A61_09485	COG0805	protein transport
J5A61_09490	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J5A61_09510	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J5A61_09525	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
J5A61_09550	COG0494	nUDIX hydrolase
J5A61_09570	COG1335	isochorismatase
J5A61_09575	COG0497	DNA recombination
J5A61_09580	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J5A61_09595	COG0647	UMP catabolic process
J5A61_09620	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J5A61_09635	COG0165	Argininosuccinate lyase
J5A61_09645	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J5A61_09650	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J5A61_09655	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
J5A61_09660	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
J5A61_09665	COG2826	transposase and inactivated derivatives, IS30 family
J5A61_09670	COG0495	leucyl-tRNA aminoacylation
J5A61_09680	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J5A61_09690	COG0072	phenylalanine-tRNA ligase activity
J5A61_09690	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5A61_09695	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
J5A61_09705	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
J5A61_09710	COG0291	Belongs to the bacterial ribosomal protein bL35 family
J5A61_09715	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
J5A61_09725	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_09730	COG1120	ATPase activity
J5A61_09755	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
J5A61_09760	COG0140	phosphoribosyl-ATP diphosphatase activity
J5A61_09765	COG0215	cysteine-tRNA ligase activity
J5A61_09775	COG0667	Aldo Keto reductase
J5A61_09790	COG0477	Major facilitator Superfamily
J5A61_09805	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
J5A61_09805	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J5A61_09810	COG3973	AAA domain
J5A61_09820	COG2826	transposase and inactivated derivatives, IS30 family
J5A61_09825	COG0142	geranyltranstransferase activity
J5A61_09840	COG1120	ATPase activity
J5A61_09845	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_09850	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_09855	COG4592	Periplasmic binding protein
J5A61_09865	COG2815	serine threonine protein kinase
J5A61_09865	COG0515	serine threonine protein kinase
J5A61_09885	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
J5A61_09890	COG2197	response regulator
J5A61_09915	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J5A61_09920	COG0088	Forms part of the polypeptide exit tunnel
J5A61_09930	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
J5A61_09975	COG0010	Belongs to the arginase family
J5A61_09985	COG1132	(ABC) transporter
J5A61_09990	COG4988	ABC transporter
J5A61_09995	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
J5A61_10025	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5A61_10030	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5A61_10035	COG0039	L-malate dehydrogenase activity
J5A61_10045	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J5A61_10050	COG0138	bifunctional purine biosynthesis protein purh
J5A61_10060	COG0535	radical SAM domain protein
J5A61_10085	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J5A61_10095	COG2197	response regulator
J5A61_10100	COG2205	protein histidine kinase activity
J5A61_10115	COG1983	PspC domain protein
J5A61_10135	COG1129	ABC transporter
J5A61_10140	COG1848	Toxic component of a toxin-antitoxin (TA) module. An RNase
J5A61_10150	COG0519	Catalyzes the synthesis of GMP from XMP
J5A61_10150	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J5A61_10170	COG3226	Transcriptional regulator
J5A61_10180	COG2826	transposase and inactivated derivatives, IS30 family
J5A61_10185	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5A61_10190	COG1120	ATPase activity
J5A61_10195	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_10200	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_10220	COG0516	GMP reductase activity
J5A61_10230	COG2860	membrane
J5A61_10235	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J5A61_10245	COG1486	melibiose metabolic process
J5A61_10255	COG0459	protein refolding
J5A61_10260	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
J5A61_10285	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5A61_10290	COG0601	transmembrane transport
J5A61_10300	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
J5A61_10310	COG0456	acetyltransferase
J5A61_10310	COG1214	PFAM Peptidase M22, glycoprotease
J5A61_10315	COG0802	atpase or kinase
J5A61_10320	COG0513	Belongs to the DEAD box helicase family
J5A61_10360	COG0736	holo-[acyl-carrier-protein] synthase activity
J5A61_10365	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J5A61_10370	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J5A61_10370	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
J5A61_10375	COG1072	(Pantothenic acid kinase))
J5A61_10380	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5A61_10385	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J5A61_10390	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
J5A61_10400	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J5A61_10400	COG2169	Transcriptional regulator
J5A61_10415	COG3304	Inner membrane component domain
J5A61_10420	COG1120	ATPase activity
J5A61_10425	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_10435	COG0220	tRNA (guanine-N7-)-methyltransferase activity
J5A61_10440	COG0101	tRNA pseudouridine synthase activity
J5A61_10465	COG0601	transmembrane transport
J5A61_10470	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5A61_10475	COG0444	Belongs to the ABC transporter superfamily
J5A61_10545	COG0203	ribosomal protein L17
J5A61_10550	COG0202	RNA polymerase activity
J5A61_10555	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
J5A61_10560	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
J5A61_10565	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
J5A61_10570	COG0257	Belongs to the bacterial ribosomal protein bL36 family
J5A61_10575	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
J5A61_10595	COG0024	Methionine aminopeptidase
J5A61_10600	COG0563	adenylate kinase activity
J5A61_10605	COG0201	protein transport
J5A61_10610	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
J5A61_10620	COG1841	ribosomal large subunit assembly
J5A61_10625	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
J5A61_10630	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
J5A61_10635	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
J5A61_10640	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
J5A61_10645	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
J5A61_10650	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
J5A61_10655	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
J5A61_10660	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
J5A61_10670	COG1528	Iron-storage protein
J5A61_10685	COG2205	protein histidine kinase activity
J5A61_10695	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
J5A61_10700	COG0255	Belongs to the universal ribosomal protein uL29 family
J5A61_10705	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
J5A61_10710	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
J5A61_10715	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
J5A61_10720	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
J5A61_10725	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
J5A61_10730	COG0089	rRNA binding
J5A61_10735	COG0088	Forms part of the polypeptide exit tunnel
J5A61_10740	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
J5A61_10745	COG0051	transcription antitermination factor activity, RNA binding
J5A61_10760	COG1136	(ABC) transporter
J5A61_10770	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J5A61_10780	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J5A61_10790	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J5A61_10795	COG0698	ribose 5-phosphate isomerase
J5A61_10805	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J5A61_10810	COG0049	tRNA binding
J5A61_10815	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
J5A61_10820	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
J5A61_10825	COG0085	RNA polymerase activity
J5A61_10835	COG0222	ribosome binding
J5A61_10840	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
J5A61_10845	COG1132	(ABC) transporter
J5A61_10850	COG1132	(ABC) transporter
J5A61_10885	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J5A61_10890	COG0227	Belongs to the bacterial ribosomal protein bL28 family
J5A61_10895	COG0254	rRNA binding
J5A61_10910	COG0081	regulation of translation
J5A61_10915	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
J5A61_10920	COG0250	Participates in transcription elongation, termination and antitermination
J5A61_10935	COG0812	UDP-N-acetylmuramate dehydrogenase activity
J5A61_10945	COG2030	dehydratase
J5A61_10950	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J5A61_10980	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
J5A61_10985	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5A61_10985	COG3711	transcriptional antiterminator
J5A61_11000	COG3732	PTS system glucitol sorbitol-specific
J5A61_11010	COG0371	Dehydrogenase
J5A61_11025	COG1131	(ABC) transporter
J5A61_11055	COG0737	Belongs to the 5'-nucleotidase family
J5A61_11065	COG2197	response regulator
J5A61_11075	COG4585	Histidine kinase
J5A61_11095	COG4585	Histidine kinase
J5A61_11125	COG0577	efflux transmembrane transporter activity
J5A61_11125	COG1136	(ABC) transporter
J5A61_11135	COG0359	binds to the 23S rRNA
J5A61_11140	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
J5A61_11150	COG0360	Binds together with S18 to 16S ribosomal RNA
J5A61_11165	COG0577	efflux transmembrane transporter activity
J5A61_11165	COG1136	(ABC) transporter
J5A61_11175	COG0778	Nitroreductase
J5A61_11195	COG1022	Amp-dependent synthetase and ligase
J5A61_11205	COG0789	Transcriptional regulator
J5A61_11210	COG2190	(PTS) system
J5A61_11210	COG2211	Major facilitator Superfamily
J5A61_11215	COG0813	purine-nucleoside phosphorylase activity
J5A61_11230	COG1666	GTP binding
J5A61_11235	COG4106	trans-aconitate 2-methyltransferase activity
J5A61_11235	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
J5A61_11245	COG2354	Protein conserved in bacteria
J5A61_11250	COG0708	Exodeoxyribonuclease III
J5A61_11265	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
J5A61_11265	COG0674	pyruvate-flavodoxin oxidoreductase activity
J5A61_11270	COG1013	pyruvate-flavodoxin oxidoreductase activity
J5A61_11295	COG0714	Associated with various cellular activities
J5A61_11300	COG3552	Protein containing von Willebrand factor type A (VWA) domain
J5A61_11320	COG0142	geranyltranstransferase activity
J5A61_11325	COG1007	ATP synthesis coupled electron transport
J5A61_11340	COG0713	ATP synthesis coupled electron transport
J5A61_11345	COG0839	Belongs to the complex I subunit 6 family
J5A61_11350	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J5A61_11355	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
J5A61_11360	COG1034	ATP synthesis coupled electron transport
J5A61_11365	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
J5A61_11375	COG0649	NAD binding
J5A61_11380	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J5A61_11385	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J5A61_11400	COG1169	isochorismate synthase
J5A61_11420	COG4133	protoheme IX ABC transporter activity
J5A61_11430	COG2226	methyltransferase
J5A61_11440	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
J5A61_11445	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
J5A61_11455	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
J5A61_11460	COG4948	Mandelate Racemase Muconate Lactonizing
J5A61_11480	COG1461	Dihydroxyacetone kinase
J5A61_11490	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
J5A61_11510	COG2375	cellular response to nickel ion
J5A61_11510	COG1132	(ABC) transporter
J5A61_11515	COG1132	(ABC) transporter
J5A61_11520	COG4166	transmembrane transport
J5A61_11555	COG0640	Transcriptional regulator
J5A61_11570	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J5A61_11575	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
J5A61_11630	COG1028	Short-chain dehydrogenase reductase Sdr
J5A61_11630	COG3321	synthase
J5A61_11630	COG0604	alcohol dehydrogenase
J5A61_11640	COG2197	response regulator
J5A61_11645	COG4585	Histidine kinase
J5A61_11650	COG1131	(ABC) transporter
J5A61_11665	COG0667	Aldo Keto reductase
J5A61_11705	COG2409	Drug exporters of the RND superfamily
J5A61_11760	COG4585	Histidine kinase
J5A61_11765	COG2197	response regulator
J5A61_11770	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
J5A61_11775	COG1136	(ABC) transporter
J5A61_11780	COG1136	(ABC) transporter
J5A61_11780	COG0577	efflux transmembrane transporter activity
J5A61_11800	COG1848	Toxic component of a toxin-antitoxin (TA) module. An RNase
J5A61_11805	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
J5A61_11820	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J5A61_11835	COG1309	transcriptional regulator
J5A61_11855	COG2056	Na+-H+ antiporter family
J5A61_11860	COG0076	glutamate decarboxylase activity
J5A61_11885	COG0515	serine threonine protein kinase
J5A61_11900	COG0840	transmembrane signaling receptor activity
J5A61_11915	COG2814	Major facilitator Superfamily
J5A61_11935	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
J5A61_11940	COG0456	acetyltransferase
J5A61_11940	COG0454	-acetyltransferase
J5A61_11950	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J5A61_11955	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J5A61_11960	COG0560	Phosphoserine phosphatase
J5A61_11960	COG3830	Belongs to the UPF0237 family
J5A61_11985	COG1473	amidohydrolase
J5A61_11995	COG1464	Belongs to the NlpA lipoprotein family
J5A61_12000	COG2011	ABC-type metal ion transport system permease component
J5A61_12005	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J5A61_12050	COG0166	Belongs to the GPI family
J5A61_12090	COG2838	Isocitrate dehydrogenase
J5A61_12095	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J5A61_12110	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J5A61_12115	COG3833	ABC-type maltose transport systems, permease component
J5A61_12120	COG1175	transmembrane transport
J5A61_12135	COG0366	Alpha amylase catalytic
J5A61_12140	COG0789	Transcriptional regulator
J5A61_12145	COG0484	heat shock protein binding
J5A61_12150	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
J5A61_12200	COG3593	DNA synthesis involved in DNA repair
J5A61_12205	COG0542	response to heat
J5A61_12255	COG1234	tRNA 3'-trailer cleavage
J5A61_12340	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
J5A61_12355	COG1970	mechanosensitive ion channel activity
J5A61_12385	COG3226	Transcriptional regulator
J5A61_12400	COG0281	malic enzyme
J5A61_12415	COG0477	Major facilitator Superfamily
J5A61_12425	COG0174	glutamine synthetase
J5A61_12480	COG1234	tRNA 3'-trailer cleavage
J5A61_12525	COG1309	transcriptional regulator
J5A61_12530	COG0477	Major facilitator Superfamily
J5A61_12560	COG2814	Major facilitator Superfamily
J5A61_12575	COG4115	mRNA cleavage
J5A61_12580	COG2161	toxin-antitoxin pair type II binding
J5A61_12585	COG3226	Transcriptional regulator
J5A61_12600	COG1733	regulation of RNA biosynthetic process
J5A61_12615	COG1595	DNA-templated transcription, initiation
J5A61_12650	COG0012	GTP binding
J5A61_12655	COG1362	aminopeptidase activity
J5A61_12660	COG1322	Protein conserved in bacteria
J5A61_12665	COG0813	purine-nucleoside phosphorylase activity
J5A61_12695	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
J5A61_12710	COG1570	exodeoxyribonuclease VII activity
J5A61_12715	COG1722	exodeoxyribonuclease VII activity
J5A61_12730	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J5A61_12740	COG1774	PSP1 C-terminal conserved region
J5A61_12760	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J5A61_12765	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
J5A61_12790	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J5A61_12790	COG1754	DNA topoisomerase type I activity
J5A61_12830	COG1940	carbohydrate kinase activity
J5A61_12835	COG1968	undecaprenyl-diphosphatase activity
J5A61_12840	COG0385	Bile acid
J5A61_12850	COG3001	Fructosamine kinase
J5A61_12855	COG1621	beta-fructofuranosidase activity
J5A61_12860	COG1136	(ABC) transporter
J5A61_12875	COG2826	transposase and inactivated derivatives, IS30 family
J5A61_12880	COG0018	arginyl-trna synthetase
J5A61_12885	COG0656	L-ascorbic acid biosynthetic process
J5A61_12890	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
J5A61_12900	COG1216	Glycosyl transferase, family 2
J5A61_12930	COG1716	ATPase activity
J5A61_12950	COG0768	penicillin binding
J5A61_12955	COG0515	serine threonine protein kinase
J5A61_12980	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J5A61_12985	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
J5A61_13015	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
J5A61_13020	COG1518	maintenance of DNA repeat elements
J5A61_13020	COG1468	defense response to virus
J5A61_13075	COG3263	regulation of cellular component size
J5A61_13110	COG0438	transferase activity, transferring glycosyl groups
J5A61_13115	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5A61_13125	COG1131	(ABC) transporter
J5A61_13155	COG2027	D-alanyl-D-alanine carboxypeptidase
J5A61_13160	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
J5A61_13205	COG0577	efflux transmembrane transporter activity
J5A61_13205	COG1136	(ABC) transporter
J5A61_13210	COG0577	efflux transmembrane transporter activity
J5A61_13210	COG1136	(ABC) transporter
J5A61_13230	COG1609	Transcriptional regulator
J5A61_13240	COG2211	Major facilitator Superfamily
J5A61_13245	COG1252	NADH dehydrogenase
J5A61_13255	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
J5A61_13260	COG1116	anion transmembrane transporter activity
J5A61_13285	COG0745	RESPONSE REGULATOR receiver
J5A61_13290	COG2205	protein histidine kinase activity
J5A61_13295	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
J5A61_13315	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5A61_13315	COG2226	methyltransferase
J5A61_13315	COG3433	isochorismatase activity
J5A61_13325	COG0318	PFAM AMP-dependent synthetase and ligase
J5A61_13375	COG1129	ABC transporter
J5A61_13390	COG1021	2,3-dihydroxybenzoate-AMP ligase
J5A61_13395	COG1021	2,3-dihydroxybenzoate-AMP ligase
J5A61_13400	COG2814	Major facilitator Superfamily
J5A61_13410	COG1129	ABC transporter
J5A61_13420	COG1132	(ABC) transporter
J5A61_13420	COG2375	cellular response to nickel ion
J5A61_13460	COG1132	(ABC) transporter
J5A61_13475	COG0717	Belongs to the dCTP deaminase family
J5A61_13480	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5A61_13505	COG0673	inositol 2-dehydrogenase activity
J5A61_13510	COG0601	transmembrane transport
J5A61_13545	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
J5A61_13560	COG0673	inositol 2-dehydrogenase activity
J5A61_13580	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J5A61_13595	COG1120	ATPase activity
J5A61_13600	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_13615	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_13620	COG1120	ATPase activity
J5A61_13625	COG1136	(ABC) transporter
J5A61_13635	COG0433	COG0433 Predicted ATPase
J5A61_13650	COG2197	response regulator
J5A61_13655	COG4585	Histidine kinase
J5A61_13660	COG1131	(ABC) transporter
J5A61_13695	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
J5A61_13760	COG1132	(ABC) transporter
J5A61_13765	COG1132	(ABC) transporter
J5A61_13770	COG1120	ATPase activity
J5A61_13775	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_13780	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_13785	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J5A61_13830	COG5564	TIM-barrel signal transduction protein
J5A61_13840	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J5A61_13845	COG3655	Transcriptional regulator
J5A61_13855	COG1239	Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
J5A61_13865	COG1429	ligase activity, forming nitrogen-metal bonds
J5A61_13870	COG1120	ATPase activity
J5A61_13875	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_13970	COG1175	transmembrane transport
J5A61_13985	COG1621	beta-fructofuranosidase activity
J5A61_14000	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
J5A61_14010	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
J5A61_14015	COG0584	glycerophosphoryl diester phosphodiesterase
J5A61_14035	COG1316	TRANSCRIPTIONal
J5A61_14045	COG0564	pseudouridine synthase activity
J5A61_14065	COG0137	argininosuccinate synthase activity
J5A61_14080	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
J5A61_14090	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5A61_14110	COG1129	ABC transporter
J5A61_14115	COG0667	Aldo Keto reductase
J5A61_14120	COG0667	Aldo Keto reductase
J5A61_14125	COG0789	Transcriptional regulator
J5A61_14145	COG4917	ethanolamine utilization protein
J5A61_14200	COG4869	propanediol catabolic process
J5A61_14215	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
J5A61_14230	COG0039	L-malate dehydrogenase activity
J5A61_14295	COG1216	Glycosyl transferase, family 2
J5A61_14295	COG0438	transferase activity, transferring glycosyl groups
J5A61_14315	COG1215	transferase activity, transferring glycosyl groups
J5A61_14345	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J5A61_14420	COG1674	ftsk spoiiie
J5A61_14445	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J5A61_14465	COG0442	prolyl-tRNA aminoacylation
J5A61_14475	COG0574	Belongs to the PEP-utilizing enzyme family
J5A61_14475	COG3848	Pyruvate phosphate dikinase
J5A61_14520	COG2814	Major facilitator Superfamily
J5A61_14550	COG3588	fructose-bisphosphate aldolase
J5A61_14605	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J5A61_14615	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5A61_14620	COG1696	Membrane protein involved in D-alanine export
J5A61_14630	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
J5A61_14645	COG0519	Catalyzes the synthesis of GMP from XMP
J5A61_14655	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J5A61_14670	COG0733	neurotransmitter:sodium symporter activity
J5A61_14680	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J5A61_14685	COG1408	metallophosphoesterase
J5A61_14700	COG3012	SEC-C Motif Domain Protein
J5A61_14760	COG0791	NLP P60 protein
J5A61_14760	COG3883	PFAM NLP P60 protein
J5A61_14770	COG1051	belongs to the nudix hydrolase family
J5A61_14775	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J5A61_14795	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J5A61_14800	COG0653	protein targeting
J5A61_14805	COG0521	Mo-molybdopterin cofactor biosynthetic process
J5A61_14805	COG0315	cyclic pyranopterin monophosphate synthase activity
J5A61_14840	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
J5A61_14855	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J5A61_14865	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J5A61_14950	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J5A61_14985	COG2856	Zn peptidase
J5A61_15015	COG0768	penicillin binding
J5A61_15025	COG3527	Alpha-acetolactate decarboxylase
J5A61_15040	COG1120	ATPase activity
J5A61_15045	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_15050	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A61_15060	COG0783	Belongs to the Dps family
J5A61_15065	COG2267	carboxylic ester hydrolase activity
J5A61_15095	COG1321	iron dependent repressor
J5A61_15100	COG1971	Probably functions as a manganese efflux pump
J5A61_15110	COG1024	Enoyl-CoA hydratase
J5A61_15115	COG1505	serine-type exopeptidase activity
J5A61_15140	COG0492	ferredoxin-NADP+ reductase activity
J5A61_15160	COG1181	Belongs to the D-alanine--D-alanine ligase family
J5A61_15180	COG0357	Ribosomal RNA small subunit methyltransferase G
J5A61_15190	COG0706	membrane insertase activity
J5A61_15195	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
J5A61_15200	COG0594	ribonuclease P activity
J5A61_15205	COG0230	Belongs to the bacterial ribosomal protein bL34 family
J5A61_15210	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J5A61_15215	COG0592	DNA-directed DNA polymerase activity
J5A61_15225	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J5A61_15230	COG5512	Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives
J5A61_15255	COG0187	DNA topoisomerase II activity
J5A61_15260	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J5A61_15270	COG2814	Major facilitator Superfamily
J5A61_15275	COG0640	Transcriptional regulator
J5A61_15290	COG0747	negative chemotaxis
J5A61_15295	COG0601	transmembrane transport
J5A61_15300	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5A61_15305	COG0444	Belongs to the ABC transporter superfamily
J5A61_15310	COG4608	Belongs to the ABC transporter superfamily
J5A61_15315	COG1108	ABC-type Mn2 Zn2 transport systems permease components