locus-tag	class	description
J5A65_00015	COG0187	DNA topoisomerase II activity
J5A65_00020	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J5A65_00035	COG0747	negative chemotaxis
J5A65_00045	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5A65_00060	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J5A65_00065	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J5A65_00070	COG1121	(ABC) transporter
J5A65_00075	COG0803	Belongs to the bacterial solute-binding protein 9 family
J5A65_00085	COG0501	Belongs to the peptidase M48B family
J5A65_00135	COG1122	ATPase activity
J5A65_00150	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
J5A65_00165	COG0205	6-phosphofructokinase activity
J5A65_00190	COG0667	Aldo Keto reductase
J5A65_00200	COG1131	(ABC) transporter
J5A65_00210	COG2197	response regulator
J5A65_00245	COG1239	Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
J5A65_00260	COG1429	ligase activity, forming nitrogen-metal bonds
J5A65_00265	COG1120	ATPase activity
J5A65_00270	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_00300	COG1028	Short-chain dehydrogenase reductase Sdr
J5A65_00305	COG0604	alcohol dehydrogenase
J5A65_00315	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J5A65_00320	COG1940	carbohydrate kinase activity
J5A65_00325	COG1063	alcohol dehydrogenase
J5A65_00335	COG0596	Alpha beta hydrolase
J5A65_00390	COG1131	(ABC) transporter
J5A65_00420	COG2826	transposase and inactivated derivatives, IS30 family
J5A65_00485	COG0604	alcohol dehydrogenase
J5A65_00485	COG3321	synthase
J5A65_00535	COG1132	(ABC) transporter
J5A65_00540	COG1770	oligopeptidase
J5A65_00545	COG1136	(ABC) transporter
J5A65_00545	COG0577	efflux transmembrane transporter activity
J5A65_00555	COG2197	response regulator
J5A65_00565	COG1088	dTDP-glucose 4,6-dehydratase activity
J5A65_00570	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
J5A65_00575	COG0318	PFAM AMP-dependent synthetase and ligase
J5A65_00590	COG2814	Major facilitator Superfamily
J5A65_00595	COG0640	Transcriptional regulator
J5A65_00605	COG1309	transcriptional regulator
J5A65_00635	COG1122	ATPase activity
J5A65_00640	COG2375	cellular response to nickel ion
J5A65_00640	COG1132	(ABC) transporter
J5A65_00655	COG1309	transcriptional regulator
J5A65_00680	COG0346	lactoylglutathione lyase activity
J5A65_00750	COG2826	transposase and inactivated derivatives, IS30 family
J5A65_00795	COG2197	response regulator
J5A65_00840	COG2376	Dihydroxyacetone kinase
J5A65_00845	COG1063	alcohol dehydrogenase
J5A65_00860	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
J5A65_00865	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
J5A65_00905	COG1116	anion transmembrane transporter activity
J5A65_00920	COG0477	Major facilitator Superfamily
J5A65_00935	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J5A65_00940	COG0596	Alpha beta hydrolase
J5A65_00945	COG3311	Transcriptional regulator
J5A65_00955	COG0667	Aldo Keto reductase
J5A65_00965	COG1621	beta-fructofuranosidase activity
J5A65_00970	COG3001	Fructosamine kinase
J5A65_01095	COG2161	toxin-antitoxin pair type II binding
J5A65_01100	COG2026	Addiction module toxin, RelE StbE family
J5A65_01145	COG3328	transposase activity
J5A65_01165	COG1846	Transcriptional regulator
J5A65_01195	COG3848	Pyruvate phosphate dikinase
J5A65_01195	COG0574	Belongs to the PEP-utilizing enzyme family
J5A65_01200	COG1309	transcriptional regulator
J5A65_01220	COG1131	(ABC) transporter
J5A65_01230	COG2197	response regulator
J5A65_01245	COG4558	Periplasmic binding protein
J5A65_01250	COG1120	ATPase activity
J5A65_01255	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_01265	COG4221	oxidoreductase activity
J5A65_01270	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5A65_01285	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J5A65_01295	COG4585	Histidine kinase
J5A65_01300	COG2197	response regulator
J5A65_01315	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J5A65_01335	COG0673	inositol 2-dehydrogenase activity
J5A65_01340	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J5A65_01355	COG2197	response regulator
J5A65_01375	COG4585	Histidine kinase
J5A65_01400	COG2188	Transcriptional regulator
J5A65_01405	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J5A65_01410	COG3718	enzyme involved in inositol metabolism
J5A65_01415	COG3962	Belongs to the TPP enzyme family
J5A65_01440	COG1131	(ABC) transporter
J5A65_01445	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
J5A65_01480	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
J5A65_01515	COG1175	transmembrane transport
J5A65_01520	COG0395	ABC-type sugar transport system, permease component
J5A65_01565	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
J5A65_01590	COG2184	nucleotidyltransferase activity
J5A65_01600	COG2184	nucleotidyltransferase activity
J5A65_01605	COG1215	transferase activity, transferring glycosyl groups
J5A65_01655	COG1902	pentaerythritol trinitrate reductase activity
J5A65_01695	COG1487	ribonuclease activity
J5A65_01715	COG0438	transferase activity, transferring glycosyl groups
J5A65_01720	COG1132	(ABC) transporter
J5A65_01735	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
J5A65_01740	COG5002	protein histidine kinase activity
J5A65_01745	COG0745	RESPONSE REGULATOR receiver
J5A65_01775	COG3266	domain, Protein
J5A65_01805	COG1674	ftsk spoiiie
J5A65_01880	COG1172	Belongs to the binding-protein-dependent transport system permease family
J5A65_01885	COG1129	ABC transporter
J5A65_01905	COG1082	Xylose isomerase domain protein TIM barrel
J5A65_01910	COG0673	inositol 2-dehydrogenase activity
J5A65_01920	COG0673	inositol 2-dehydrogenase activity
J5A65_01950	COG0305	Participates in initiation and elongation during chromosome replication
J5A65_01955	COG1937	Protein conserved in bacteria
J5A65_01970	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J5A65_02005	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
J5A65_02010	COG4988	ABC transporter
J5A65_02015	COG1294	oxidase, subunit
J5A65_02020	COG1271	oxidase subunit
J5A65_02040	COG1028	Short-chain dehydrogenase reductase Sdr
J5A65_02050	COG1944	ATP diphosphatase activity
J5A65_02065	COG1132	(ABC) transporter
J5A65_02100	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
J5A65_02110	COG1027	Aspartate ammonia-lyase
J5A65_02125	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
J5A65_02130	COG1940	carbohydrate kinase activity
J5A65_02140	COG1175	transmembrane transport
J5A65_02150	COG1940	carbohydrate kinase activity
J5A65_02175	COG0366	Alpha amylase catalytic
J5A65_02195	COG2205	protein histidine kinase activity
J5A65_02210	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
J5A65_02220	COG0022	dehydrogenase e1 component
J5A65_02225	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5A65_02235	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J5A65_02245	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
J5A65_02260	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
J5A65_02265	COG0561	phosphatase activity
J5A65_02290	COG0494	nUDIX hydrolase
J5A65_02325	COG1205	dead DEAH box helicase
J5A65_02325	COG1111	helicase
J5A65_02345	COG2890	protein-(glutamine-N5) methyltransferase activity
J5A65_02390	COG5564	TIM-barrel signal transduction protein
J5A65_02400	COG0406	alpha-ribazole phosphatase activity
J5A65_02410	COG1595	DNA-templated transcription, initiation
J5A65_02415	COG1252	NADH dehydrogenase
J5A65_02425	COG0302	gtp cyclohydrolase
J5A65_02435	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
J5A65_02465	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
J5A65_02475	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
J5A65_02485	COG1082	Xylose isomerase domain protein TIM barrel
J5A65_02505	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
J5A65_02525	COG0406	alpha-ribazole phosphatase activity
J5A65_02535	COG4221	oxidoreductase activity
J5A65_02555	COG3550	peptidyl-serine autophosphorylation
J5A65_02565	COG1131	(ABC) transporter
J5A65_02570	COG4585	Histidine kinase
J5A65_02575	COG2197	response regulator
J5A65_02600	COG1136	(ABC) transporter
J5A65_02600	COG0577	efflux transmembrane transporter activity
J5A65_02600	COG1136	(ABC) transporter
J5A65_02600	COG0577	efflux transmembrane transporter activity
J5A65_02625	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J5A65_02670	COG0395	ABC-type sugar transport system, permease component
J5A65_02675	COG1175	transmembrane transport
J5A65_02685	COG1940	carbohydrate kinase activity
J5A65_02690	COG3525	Glycosyl hydrolase, family 20, catalytic domain
J5A65_02700	COG0406	alpha-ribazole phosphatase activity
J5A65_02700	COG0494	nUDIX hydrolase
J5A65_02705	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
J5A65_02710	COG0456	acetyltransferase
J5A65_02715	COG0745	RESPONSE REGULATOR receiver
J5A65_02730	COG0025	NhaP-type Na H and K H
J5A65_02735	COG3104	oligopeptide transport
J5A65_02755	COG1966	Carbon starvation protein
J5A65_02760	COG1490	D-aminoacyl-tRNA deacylase activity
J5A65_02765	COG3485	protocatechuate 3,4-dioxygenase
J5A65_02770	COG0354	folic acid binding
J5A65_02775	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
J5A65_02780	COG2326	polyphosphate kinase activity
J5A65_02790	COG0583	DNA-binding transcription factor activity
J5A65_02825	COG1217	gtp-binding protein TYPA
J5A65_02845	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J5A65_02850	COG1461	Dihydroxyacetone kinase
J5A65_02855	COG2376	Dihydroxyacetone kinase
J5A65_02860	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J5A65_02900	COG3311	Transcriptional regulator
J5A65_02915	COG0151	Belongs to the GarS family
J5A65_02925	COG1136	(ABC) transporter
J5A65_02945	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
J5A65_02965	COG4152	abc transporter atp-binding protein
J5A65_02970	COG2197	response regulator
J5A65_02975	COG4585	Histidine kinase
J5A65_02990	COG1175	transmembrane transport
J5A65_02995	COG0395	ABC-type sugar transport system, permease component
J5A65_03020	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J5A65_03030	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J5A65_03035	COG0047	phosphoribosylformylglycinamidine synthase activity
J5A65_03050	COG0857	belongs to the CobB CobQ family
J5A65_03050	COG0280	phosphate acetyltransferase
J5A65_03070	COG1454	alcohol dehydrogenase
J5A65_03070	COG1012	belongs to the aldehyde dehydrogenase family
J5A65_03095	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
J5A65_03115	COG0427	acetyl-CoA hydrolase
J5A65_03130	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
J5A65_03140	COG1331	Highly conserved protein containing a thioredoxin domain
J5A65_03150	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5A65_03155	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J5A65_03215	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
J5A65_03220	COG0484	heat shock protein binding
J5A65_03225	COG0789	Transcriptional regulator
J5A65_03230	COG0366	Alpha amylase catalytic
J5A65_03245	COG1175	transmembrane transport
J5A65_03250	COG3833	ABC-type maltose transport systems, permease component
J5A65_03265	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J5A65_03270	COG0477	Major facilitator Superfamily
J5A65_03280	COG2838	Isocitrate dehydrogenase
J5A65_03295	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5A65_03345	COG0166	Belongs to the GPI family
J5A65_03385	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J5A65_03390	COG2011	ABC-type metal ion transport system permease component
J5A65_03395	COG1464	Belongs to the NlpA lipoprotein family
J5A65_03405	COG1473	amidohydrolase
J5A65_03420	COG0560	Phosphoserine phosphatase
J5A65_03420	COG3830	Belongs to the UPF0237 family
J5A65_03425	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J5A65_03430	COG2813	Specifically methylates the guanine in position
J5A65_03445	COG0840	transmembrane signaling receptor activity
J5A65_03460	COG0515	serine threonine protein kinase
J5A65_03500	COG4977	sequence-specific DNA binding
J5A65_03520	COG2826	transposase and inactivated derivatives, IS30 family
J5A65_03525	COG2826	transposase and inactivated derivatives, IS30 family
J5A65_03530	COG2814	Major facilitator Superfamily
J5A65_03535	COG3654	unkown
J5A65_03550	COG2197	response regulator
J5A65_03555	COG3850	Histidine kinase
J5A65_03565	COG3059	membrane
J5A65_03575	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J5A65_03590	COG1070	Carbohydrate kinase
J5A65_03600	COG1487	ribonuclease activity
J5A65_03625	COG2197	response regulator
J5A65_03635	COG1131	(ABC) transporter
J5A65_03645	COG0477	Major facilitator Superfamily
J5A65_03660	COG0076	glutamate decarboxylase activity
J5A65_03665	COG2056	Na+-H+ antiporter family
J5A65_03710	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
J5A65_03715	COG2197	response regulator
J5A65_03720	COG4585	Histidine kinase
J5A65_03745	COG1122	ATPase activity
J5A65_03760	COG1309	transcriptional regulator
J5A65_03765	COG2409	Drug exporters of the RND superfamily
J5A65_03775	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
J5A65_03780	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J5A65_03790	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5A65_03815	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
J5A65_03825	COG1461	Dihydroxyacetone kinase
J5A65_03835	COG0318	PFAM AMP-dependent synthetase and ligase
J5A65_03840	COG1575	Belongs to the MenA family. Type 1 subfamily
J5A65_03845	COG4948	Mandelate Racemase Muconate Lactonizing
J5A65_03850	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
J5A65_03860	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
J5A65_03865	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
J5A65_03870	COG0488	(ABC) transporter
J5A65_03885	COG2226	methyltransferase
J5A65_03895	COG1116	anion transmembrane transporter activity
J5A65_03915	COG1169	isochorismate synthase
J5A65_03930	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J5A65_03935	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J5A65_03940	COG0649	NAD binding
J5A65_03950	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
J5A65_03955	COG1034	ATP synthesis coupled electron transport
J5A65_03960	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
J5A65_03965	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J5A65_03970	COG0839	Belongs to the complex I subunit 6 family
J5A65_03975	COG0713	ATP synthesis coupled electron transport
J5A65_03990	COG1007	ATP synthesis coupled electron transport
J5A65_03995	COG0142	geranyltranstransferase activity
J5A65_04005	COG0254	rRNA binding
J5A65_04010	COG0227	Belongs to the bacterial ribosomal protein bL28 family
J5A65_04015	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J5A65_04020	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
J5A65_04075	COG1013	pyruvate-flavodoxin oxidoreductase activity
J5A65_04080	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
J5A65_04080	COG0674	pyruvate-flavodoxin oxidoreductase activity
J5A65_04090	COG0708	Exodeoxyribonuclease III
J5A65_04095	COG2354	Protein conserved in bacteria
J5A65_04100	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
J5A65_04100	COG4106	trans-aconitate 2-methyltransferase activity
J5A65_04105	COG2188	Transcriptional regulator
J5A65_04115	COG3214	Protein conserved in bacteria
J5A65_04120	COG1666	GTP binding
J5A65_04130	COG2211	Major facilitator Superfamily
J5A65_04130	COG2190	(PTS) system
J5A65_04135	COG0789	Transcriptional regulator
J5A65_04145	COG1022	Amp-dependent synthetase and ligase
J5A65_04150	COG3570	aminoglycoside hydroxyurea antibiotic resistance kinase
J5A65_04165	COG0778	Nitroreductase
J5A65_04175	COG0577	efflux transmembrane transporter activity
J5A65_04175	COG1136	(ABC) transporter
J5A65_04190	COG0360	Binds together with S18 to 16S ribosomal RNA
J5A65_04195	COG0629	single-stranded DNA binding
J5A65_04200	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
J5A65_04205	COG0359	binds to the 23S rRNA
J5A65_04215	COG0737	Belongs to the 5'-nucleotidase family
J5A65_04245	COG0371	Dehydrogenase
J5A65_04255	COG3732	PTS system glucitol sorbitol-specific
J5A65_04260	COG3730	PTS system glucitol sorbitol-specific
J5A65_04275	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
J5A65_04305	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J5A65_04310	COG2030	dehydratase
J5A65_04320	COG0812	UDP-N-acetylmuramate dehydrogenase activity
J5A65_04335	COG0250	Participates in transcription elongation, termination and antitermination
J5A65_04340	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
J5A65_04345	COG0081	regulation of translation
J5A65_04350	COG1132	(ABC) transporter
J5A65_04355	COG1132	(ABC) transporter
J5A65_04360	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
J5A65_04365	COG0222	ribosome binding
J5A65_04390	COG0085	RNA polymerase activity
J5A65_04395	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
J5A65_04400	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
J5A65_04405	COG0049	tRNA binding
J5A65_04410	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J5A65_04420	COG0698	ribose 5-phosphate isomerase
J5A65_04425	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J5A65_04435	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J5A65_04445	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J5A65_04450	COG1126	abc transporter atp-binding protein
J5A65_04455	COG0765	amino acid transport
J5A65_04460	COG0765	amino acid transport
J5A65_04480	COG1846	Transcriptional regulator
J5A65_04485	COG0604	alcohol dehydrogenase
J5A65_04495	COG1136	(ABC) transporter
J5A65_04505	COG2197	response regulator
J5A65_04510	COG0051	transcription antitermination factor activity, RNA binding
J5A65_04515	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
J5A65_04520	COG0088	Forms part of the polypeptide exit tunnel
J5A65_04525	COG0089	rRNA binding
J5A65_04530	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
J5A65_04535	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
J5A65_04540	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
J5A65_04545	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
J5A65_04550	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
J5A65_04555	COG0255	Belongs to the universal ribosomal protein uL29 family
J5A65_04560	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
J5A65_04565	COG1528	Iron-storage protein
J5A65_04575	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
J5A65_04580	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
J5A65_04585	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
J5A65_04590	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
J5A65_04595	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
J5A65_04600	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
J5A65_04605	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
J5A65_04610	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
J5A65_04615	COG1841	ribosomal large subunit assembly
J5A65_04625	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
J5A65_04635	COG0563	adenylate kinase activity
J5A65_04640	COG0024	Methionine aminopeptidase
J5A65_04655	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
J5A65_04660	COG0257	Belongs to the bacterial ribosomal protein bL36 family
J5A65_04665	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
J5A65_04670	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
J5A65_04675	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
J5A65_04680	COG0202	RNA polymerase activity
J5A65_04685	COG0203	ribosomal protein L17
J5A65_04720	COG0656	L-ascorbic acid biosynthetic process
J5A65_04725	COG1028	Short-chain dehydrogenase reductase Sdr
J5A65_04745	COG0101	tRNA pseudouridine synthase activity
J5A65_04750	COG0220	tRNA (guanine-N7-)-methyltransferase activity
J5A65_04760	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_04765	COG1120	ATPase activity
J5A65_04785	COG2169	Transcriptional regulator
J5A65_04785	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J5A65_04790	COG2197	response regulator
J5A65_04800	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J5A65_04805	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
J5A65_04810	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J5A65_04815	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5A65_04820	COG1072	(Pantothenic acid kinase))
J5A65_04825	COG1335	isochorismatase
J5A65_04830	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
J5A65_04830	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J5A65_04835	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J5A65_04840	COG0736	holo-[acyl-carrier-protein] synthase activity
J5A65_04900	COG2826	transposase and inactivated derivatives, IS30 family
J5A65_04915	COG3328	transposase activity
J5A65_04960	COG1640	4-alpha-glucanotransferase
J5A65_04975	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
J5A65_04985	COG0673	inositol 2-dehydrogenase activity
J5A65_05000	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
J5A65_05040	COG0667	Aldo Keto reductase
J5A65_05050	COG0366	Alpha amylase catalytic
J5A65_05065	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J5A65_05090	COG0513	Belongs to the DEAD box helicase family
J5A65_05095	COG0802	atpase or kinase
J5A65_05100	COG0456	acetyltransferase
J5A65_05100	COG1214	PFAM Peptidase M22, glycoprotease
J5A65_05110	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
J5A65_05115	COG4166	transmembrane transport
J5A65_05125	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5A65_05145	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
J5A65_05150	COG0459	protein refolding
J5A65_05180	COG1486	melibiose metabolic process
J5A65_05205	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J5A65_05225	COG2860	membrane
J5A65_05255	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_05260	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_05265	COG1120	ATPase activity
J5A65_05270	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5A65_05280	COG3226	Transcriptional regulator
J5A65_05300	COG0519	Catalyzes the synthesis of GMP from XMP
J5A65_05300	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J5A65_05305	COG1983	PspC domain protein
J5A65_05320	COG2205	protein histidine kinase activity
J5A65_05325	COG2197	response regulator
J5A65_05335	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J5A65_05345	COG0739	heme binding
J5A65_05365	COG0138	bifunctional purine biosynthesis protein purh
J5A65_05370	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J5A65_05380	COG0039	L-malate dehydrogenase activity
J5A65_05385	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5A65_05390	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5A65_05405	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
J5A65_05450	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
J5A65_05460	COG0088	Forms part of the polypeptide exit tunnel
J5A65_05465	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J5A65_05480	COG0204	Acyl-transferase
J5A65_05490	COG2197	response regulator
J5A65_05495	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
J5A65_05505	COG0515	serine threonine protein kinase
J5A65_05505	COG2815	serine threonine protein kinase
J5A65_05515	COG4592	Periplasmic binding protein
J5A65_05520	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_05525	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_05530	COG1120	ATPase activity
J5A65_05540	COG0142	geranyltranstransferase activity
J5A65_05550	COG3973	AAA domain
J5A65_05555	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
J5A65_05555	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J5A65_05570	COG0667	Aldo Keto reductase
J5A65_05575	COG1968	undecaprenyl-diphosphatase activity
J5A65_05585	COG0215	cysteine-tRNA ligase activity
J5A65_05590	COG0140	phosphoribosyl-ATP diphosphatase activity
J5A65_05595	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
J5A65_05620	COG1120	ATPase activity
J5A65_05635	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_05645	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
J5A65_05650	COG0291	Belongs to the bacterial ribosomal protein bL35 family
J5A65_05655	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
J5A65_05660	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J5A65_05665	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
J5A65_05670	COG0072	phenylalanine-tRNA ligase activity
J5A65_05670	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5A65_05685	COG0495	leucyl-tRNA aminoacylation
J5A65_05690	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
J5A65_05695	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
J5A65_05700	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J5A65_05705	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J5A65_05715	COG0165	Argininosuccinate lyase
J5A65_05730	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J5A65_05755	COG0647	UMP catabolic process
J5A65_05765	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
J5A65_05770	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J5A65_05775	COG0497	DNA recombination
J5A65_05780	COG1335	isochorismatase
J5A65_05820	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
J5A65_05825	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
J5A65_05835	COG0545	Peptidyl-prolyl cis-trans isomerase
J5A65_05840	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J5A65_05845	COG2378	regulation of single-species biofilm formation
J5A65_05865	COG0805	protein transport
J5A65_05875	COG4581	dead DEAH box helicase
J5A65_05880	COG0107	imidazoleglycerol-phosphate synthase activity
J5A65_05885	COG0537	adenosine 5'-monophosphoramidase activity
J5A65_05895	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J5A65_05905	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
J5A65_05910	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J5A65_05925	COG0129	dihydroxy-acid dehydratase activity
J5A65_05950	COG1643	Atp-dependent helicase
J5A65_05955	COG1946	Acyl-CoA thioesterase
J5A65_05965	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J5A65_05980	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J5A65_05985	COG1074	ATP-dependent DNA helicase activity
J5A65_06005	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
J5A65_06015	COG1615	UPF0182 protein
J5A65_06045	COG0714	Associated with various cellular activities
J5A65_06050	COG2001	Belongs to the MraZ family
J5A65_06055	COG0275	rRNA processing
J5A65_06065	COG0768	penicillin binding
J5A65_06070	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J5A65_06075	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J5A65_06080	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J5A65_06085	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
J5A65_06090	COG0772	Belongs to the SEDS family
J5A65_06095	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J5A65_06100	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J5A65_06115	COG1799	cell septum assembly
J5A65_06145	COG0469	pyruvate kinase activity
J5A65_06160	COG2050	protein possibly involved in aromatic compounds catabolism
J5A65_06175	COG0539	negative regulation of cytoplasmic translation
J5A65_06180	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J5A65_06180	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J5A65_06185	COG0509	glycine decarboxylation via glycine cleavage system
J5A65_06190	COG0404	The glycine cleavage system catalyzes the degradation of glycine
J5A65_06200	COG0237	dephospho-CoA kinase activity
J5A65_06205	COG0556	nucleotide-excision repair
J5A65_06220	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J5A65_06235	COG1131	(ABC) transporter
J5A65_06255	COG0247	lactate metabolic process
J5A65_06255	COG0277	FAD linked oxidase domain protein
J5A65_06265	COG1022	Amp-dependent synthetase and ligase
J5A65_06275	COG0583	DNA-binding transcription factor activity
J5A65_06290	COG1201	RNA secondary structure unwinding
J5A65_06295	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
J5A65_06305	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
J5A65_06310	COG0540	Belongs to the ATCase OTCase family
J5A65_06320	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J5A65_06325	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J5A65_06355	COG0701	Predicted permease
J5A65_06375	COG0371	Dehydrogenase
J5A65_06380	COG1070	Carbohydrate kinase
J5A65_06385	COG0647	UMP catabolic process
J5A65_06395	COG0698	ribose 5-phosphate isomerase
J5A65_06400	COG1349	DNA-binding transcription factor activity
J5A65_06405	COG0586	Pfam SNARE associated Golgi protein
J5A65_06415	COG1950	PFAM Membrane protein of
J5A65_06430	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J5A65_06435	COG0544	peptidyl-prolyl cis-trans isomerase activity
J5A65_06440	COG0628	permease
J5A65_06445	COG0740	serine-type endopeptidase activity
J5A65_06450	COG0740	serine-type endopeptidase activity
J5A65_06455	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
J5A65_06460	COG0793	Belongs to the peptidase S41A family
J5A65_06460	COG4946	Tricorn protease homolog
J5A65_06465	COG0525	valine-tRNA ligase activity
J5A65_06480	COG0285	dihydrofolate synthase activity
J5A65_06495	COG1530	ribonuclease E activity
J5A65_06495	COG1530	ribonuclease E activity
J5A65_06500	COG0261	This protein binds to 23S rRNA in the presence of protein L20
J5A65_06505	COG0211	Belongs to the bacterial ribosomal protein bL27 family
J5A65_06510	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
J5A65_06515	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
J5A65_06520	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
J5A65_06525	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
J5A65_06530	COG0799	negative regulation of ribosome biogenesis
J5A65_06575	COG0656	L-ascorbic acid biosynthetic process
J5A65_06590	COG3253	May function as heme-dependent peroxidase
J5A65_06590	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
J5A65_06595	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
J5A65_06600	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
J5A65_06605	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
J5A65_06615	COG0181	hydroxymethylbilane synthase activity
J5A65_06620	COG0113	porphobilinogen synthase activity
J5A65_06625	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
J5A65_06645	COG1846	Transcriptional regulator
J5A65_06650	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J5A65_06660	COG1819	glycosyl
J5A65_06665	COG2855	membrane
J5A65_06670	COG1760	l-serine dehydratase
J5A65_06690	COG2814	Major facilitator Superfamily
J5A65_06695	COG0640	Transcriptional regulator
J5A65_06720	COG3409	Peptidoglycan-binding domain 1 protein
J5A65_06720	COG3773	Cell wall hydrolase
J5A65_06740	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J5A65_06745	COG2197	response regulator
J5A65_06780	COG4868	Belongs to the UPF0371 family
J5A65_06785	COG0268	Binds directly to 16S ribosomal RNA
J5A65_06790	COG0481	GTPase activity
J5A65_06800	COG1175	transmembrane transport
J5A65_06815	COG2318	DinB family
J5A65_06825	COG4221	oxidoreductase activity
J5A65_06835	COG1131	(ABC) transporter
J5A65_06850	COG0483	inositol monophosphate 1-phosphatase activity
J5A65_06860	COG1420	regulation of RNA biosynthetic process
J5A65_06865	COG0484	heat shock protein binding
J5A65_06875	COG1597	lipid kinase activity
J5A65_06880	COG0343	queuine tRNA-ribosyltransferase activity
J5A65_06900	COG1609	Transcriptional regulator
J5A65_06905	COG0673	inositol 2-dehydrogenase activity
J5A65_06920	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
J5A65_06930	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J5A65_06935	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J5A65_06940	COG1408	metallophosphoesterase
J5A65_06975	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
J5A65_06985	COG0366	Alpha amylase catalytic
J5A65_07000	COG2326	polyphosphate kinase activity
J5A65_07005	COG1104	cysteine desulfurase activity
J5A65_07010	COG0482	sulfurtransferase activity
J5A65_07035	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J5A65_07040	COG0154	amidase activity
J5A65_07045	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J5A65_07050	COG3548	integral membrane protein
J5A65_07060	COG1690	Belongs to the RtcB family
J5A65_07065	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
J5A65_07070	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J5A65_07075	COG0134	indole-3-glycerol-phosphate synthase activity
J5A65_07080	COG0133	tryptophan synthase activity
J5A65_07090	COG2197	response regulator
J5A65_07105	COG0587	DNA-directed DNA polymerase activity
J5A65_07115	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
J5A65_07120	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J5A65_07125	COG0131	Imidazoleglycerol-phosphate dehydratase
J5A65_07130	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J5A65_07135	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J5A65_07140	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
J5A65_07145	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
J5A65_07165	COG0456	acetyltransferase
J5A65_07170	COG0217	transcriptional regulatory protein
J5A65_07175	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
J5A65_07180	COG0632	four-way junction helicase activity
J5A65_07185	COG2255	four-way junction helicase activity
J5A65_07195	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J5A65_07200	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J5A65_07205	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J5A65_07215	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J5A65_07230	COG1196	nuclear chromosome segregation
J5A65_07240	COG0124	histidyl-tRNA synthetase
J5A65_07255	COG2837	iron assimilation
J5A65_07260	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
J5A65_07270	COG2814	Major facilitator Superfamily
J5A65_07290	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
J5A65_07295	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
J5A65_07300	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J5A65_07305	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
J5A65_07310	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
J5A65_07315	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
J5A65_07320	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
J5A65_07325	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J5A65_07330	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J5A65_07335	COG0505	Belongs to the CarA family
J5A65_07340	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J5A65_07345	COG0167	dihydroorotate dehydrogenase activity
J5A65_07350	COG0284	orotidine-5'-phosphate decarboxylase activity
J5A65_07360	COG0194	GDP metabolic process
J5A65_07365	COG1758	RNA polymerase activity
J5A65_07370	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J5A65_07380	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J5A65_07390	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J5A65_07420	COG1410	methionine synthase
J5A65_07420	COG0646	methionine synthase
J5A65_07425	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J5A65_07440	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
J5A65_07445	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
J5A65_07450	COG1160	GTP binding
J5A65_07465	COG1114	Component of the transport system for branched-chain amino acids
J5A65_07475	COG1376	ErfK ybiS ycfS ynhG family protein
J5A65_07480	COG2111	Na H antiporter
J5A65_07480	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J5A65_07485	COG1006	Multisubunit Na H antiporter MnhC subunit
J5A65_07490	COG0651	ATP synthesis coupled electron transport
J5A65_07495	COG1863	multisubunit Na H antiporter MnhE subunit
J5A65_07500	COG2212	antiporter activity
J5A65_07510	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J5A65_07515	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J5A65_07515	COG2813	Specifically methylates the guanine in position
J5A65_07520	COG0815	Transfers the fatty acyl group on membrane lipoproteins
J5A65_07525	COG1216	Glycosyl transferase, family 2
J5A65_07530	COG3030	protein affecting phage T7 exclusion by the F plasmid
J5A65_07545	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
J5A65_07565	COG4552	Acetyltransferase involved in intracellular survival and related
J5A65_07580	COG0009	L-threonylcarbamoyladenylate synthase
J5A65_07595	COG0205	6-phosphofructokinase activity
J5A65_07625	COG1716	ATPase activity
J5A65_07655	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
J5A65_07695	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J5A65_07705	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
J5A65_07710	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
J5A65_07715	COG1113	amino acid transport
J5A65_07720	COG0686	Belongs to the AlaDH PNT family
J5A65_07725	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
J5A65_07730	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J5A65_07735	COG0531	amino acid
J5A65_07740	COG0569	domain protein
J5A65_07760	COG0756	dUTP diphosphatase activity
J5A65_07780	COG1435	thymidine kinase activity
J5A65_07805	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J5A65_07835	COG1278	Cold shock
J5A65_07850	COG0513	Belongs to the DEAD box helicase family
J5A65_07855	COG0180	Tryptophanyl-tRNA synthetase
J5A65_07860	COG0613	PHP domain protein
J5A65_07880	COG2826	transposase and inactivated derivatives, IS30 family
J5A65_07900	COG0653	protein targeting
J5A65_07905	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
J5A65_07915	COG5401	PFAM Sporulation and spore germination
J5A65_07920	COG5002	protein histidine kinase activity
J5A65_07925	COG0745	RESPONSE REGULATOR receiver
J5A65_07930	COG1678	Uncharacterized ACR, COG1678
J5A65_07960	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
J5A65_07975	COG2884	Cell division ATP-binding protein ftsE
J5A65_07980	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
J5A65_08000	COG0205	6-phosphofructokinase activity
J5A65_08010	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
J5A65_08015	COG1653	transport
J5A65_08030	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J5A65_08035	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5A65_08055	COG2304	oxidoreductase activity
J5A65_08060	COG2304	oxidoreductase activity
J5A65_08070	COG0714	Associated with various cellular activities
J5A65_08100	COG1929	Belongs to the glycerate kinase type-1 family
J5A65_08140	COG4932	domain protein
J5A65_08140	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
J5A65_08140	COG3266	domain, Protein
J5A65_08165	COG0358	DNA primase activity
J5A65_08170	COG2197	response regulator
J5A65_08175	COG4585	Histidine kinase
J5A65_08185	COG1131	(ABC) transporter
J5A65_08205	COG0339	signal peptide processing
J5A65_08210	COG1940	carbohydrate kinase activity
J5A65_08230	COG1175	transmembrane transport
J5A65_08275	COG1381	Involved in DNA repair and RecF pathway recombination
J5A65_08280	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J5A65_08325	COG0596	Alpha beta hydrolase
J5A65_08330	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J5A65_08345	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J5A65_08350	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J5A65_08355	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
J5A65_08360	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
J5A65_08365	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J5A65_08370	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
J5A65_08375	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J5A65_08380	COG0356	it plays a direct role in the translocation of protons across the membrane
J5A65_08390	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J5A65_08400	COG2890	protein-(glutamine-N5) methyltransferase activity
J5A65_08405	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
J5A65_08410	COG0254	rRNA binding
J5A65_08420	COG0083	homoserine kinase activity
J5A65_08425	COG0460	homoserine dehydrogenase
J5A65_08445	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5A65_08445	COG0567	Dehydrogenase, E1 component
J5A65_08450	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
J5A65_08470	COG1595	DNA-templated transcription, initiation
J5A65_08480	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
J5A65_08485	COG1162	GTPase activity
J5A65_08490	COG0483	inositol monophosphate 1-phosphatase activity
J5A65_08495	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J5A65_08500	COG4608	Belongs to the ABC transporter superfamily
J5A65_08505	COG0444	Belongs to the ABC transporter superfamily
J5A65_08510	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5A65_08520	COG0747	negative chemotaxis
J5A65_08540	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J5A65_08550	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
J5A65_08560	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J5A65_08565	COG2017	converts alpha-aldose to the beta-anomer
J5A65_08570	COG1418	mRNA catabolic process
J5A65_08575	COG2137	regulation of response to DNA damage stimulus
J5A65_08600	COG1674	ftsk spoiiie
J5A65_08630	COG2826	transposase and inactivated derivatives, IS30 family
J5A65_08635	COG1120	ATPase activity
J5A65_08640	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_08645	COG0673	inositol 2-dehydrogenase activity
J5A65_08655	COG0066	3-isopropylmalate dehydratase activity
J5A65_08660	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
J5A65_08665	COG1414	Transcriptional regulator
J5A65_08690	COG0179	Fumarylacetoacetate (FAA) hydrolase
J5A65_08715	COG0477	Major facilitator Superfamily
J5A65_08720	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
J5A65_08725	COG0440	acetolactate synthase activity
J5A65_08730	COG0028	Belongs to the TPP enzyme family
J5A65_08735	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J5A65_08755	COG0792	nuclease activity
J5A65_08765	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
J5A65_08775	COG0335	large ribosomal subunit rRNA binding
J5A65_08790	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J5A65_08795	COG1053	succinate dehydrogenase
J5A65_08805	COG0336	Belongs to the RNA methyltransferase TrmD family
J5A65_08810	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
J5A65_08815	COG1837	Belongs to the UPF0109 family
J5A65_08820	COG0228	four-way junction DNA binding
J5A65_08845	COG2723	6-phospho-beta-galactosidase activity
J5A65_08850	COG0395	ABC-type sugar transport system, permease component
J5A65_08870	COG4585	Histidine kinase
J5A65_08875	COG2197	response regulator
J5A65_08885	COG1196	nuclear chromosome segregation
J5A65_08895	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
J5A65_08900	COG0571	ribonuclease III activity
J5A65_08905	COG0333	Belongs to the bacterial ribosomal protein bL32 family
J5A65_08915	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
J5A65_08925	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J5A65_08930	COG0227	Belongs to the bacterial ribosomal protein bL28 family
J5A65_08935	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
J5A65_08945	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
J5A65_08950	COG1185	polyribonucleotide nucleotidyltransferase activity
J5A65_08955	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J5A65_08965	COG1556	Lactate utilization protein
J5A65_08970	COG1139	Iron-sulfur cluster binding protein
J5A65_08975	COG0247	lactate metabolic process
J5A65_08980	COG1620	l-lactate permease
J5A65_08985	COG4106	trans-aconitate 2-methyltransferase activity
J5A65_08990	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
J5A65_09005	COG4139	cobalamin transport
J5A65_09010	COG2186	Transcriptional regulator
J5A65_09015	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
J5A65_09020	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J5A65_09025	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
J5A65_09040	COG0195	Participates in both transcription termination and antitermination
J5A65_09045	COG0779	Required for maturation of 30S ribosomal subunits
J5A65_09055	COG2197	response regulator
J5A65_09070	COG0442	prolyl-tRNA aminoacylation
J5A65_09080	COG0456	acetyltransferase
J5A65_09085	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
J5A65_09095	COG1648	precorrin-2 dehydrogenase activity
J5A65_09095	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J5A65_09100	COG1797	cobyrinic acid a,c-diamide synthase activity
J5A65_09105	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
J5A65_09120	COG2875	Belongs to the precorrin methyltransferase family
J5A65_09155	COG0310	cobalt ion transport
J5A65_09170	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J5A65_09175	COG0321	lipoyl(octanoyl) transferase activity
J5A65_09180	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
J5A65_09190	COG0110	maltose O-acetyltransferase activity
J5A65_09195	COG0488	(ABC) transporter
J5A65_09215	COG2391	methyltransferase activity
J5A65_09220	COG0425	Belongs to the sulfur carrier protein TusA family
J5A65_09225	COG2188	Transcriptional regulator
J5A65_09230	COG4821	SIS domain
J5A65_09265	COG1131	(ABC) transporter
J5A65_09270	COG0842	Transport permease protein
J5A65_09275	COG1309	transcriptional regulator
J5A65_09280	COG0174	glutamine synthetase
J5A65_09285	COG2409	Drug exporters of the RND superfamily
J5A65_09305	COG1823	symporter activity
J5A65_09310	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J5A65_09315	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J5A65_09320	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
J5A65_09330	COG0174	glutamine synthetase
J5A65_09365	COG0006	proline dipeptidase activity
J5A65_09400	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J5A65_09410	COG1595	DNA-templated transcription, initiation
J5A65_09415	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J5A65_09430	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J5A65_09435	COG0297	glycogen (starch) synthase activity
J5A65_09460	COG2171	N-acyltransferase activity
J5A65_09495	COG0616	signal peptide processing
J5A65_09510	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
J5A65_09520	COG3552	Protein containing von Willebrand factor type A (VWA) domain
J5A65_09530	COG0714	Associated with various cellular activities
J5A65_09580	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5A65_09590	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5A65_09600	COG1131	(ABC) transporter
J5A65_09605	COG0823	Involved in the tonB-independent uptake of proteins
J5A65_09605	COG1506	peptidase
J5A65_09605	COG4946	Tricorn protease homolog
J5A65_09615	COG0328	RNA-DNA hybrid ribonuclease activity
J5A65_09620	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J5A65_09630	COG1079	Belongs to the binding-protein-dependent transport system permease family
J5A65_09635	COG4603	Belongs to the binding-protein-dependent transport system permease family
J5A65_09640	COG3845	ABC transporter
J5A65_09645	COG1744	ABC transporter substrate-binding protein PnrA-like
J5A65_09655	COG1253	flavin adenine dinucleotide binding
J5A65_09675	COG1492	cobalamin metabolic process
J5A65_09680	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
J5A65_09685	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
J5A65_09695	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
J5A65_09700	COG0750	zinc metalloprotease
J5A65_09705	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
J5A65_09710	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J5A65_09715	COG0820	rRNA (adenine-C2-)-methyltransferase activity
J5A65_09720	COG0575	Belongs to the CDS family
J5A65_09725	COG0233	cytoplasmic translational termination
J5A65_09730	COG0528	UMP kinase activity
J5A65_09735	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
J5A65_09740	COG0052	Belongs to the universal ribosomal protein uS2 family
J5A65_09745	COG0739	heme binding
J5A65_09745	COG0741	lytic transglycosylase activity
J5A65_09745	COG1196	nuclear chromosome segregation
J5A65_09750	COG4974	Belongs to the 'phage' integrase family
J5A65_09755	COG0242	peptide deformylase activity
J5A65_09775	COG0114	fumarate hydratase activity
J5A65_09780	COG1119	ATPase activity
J5A65_09790	COG1028	Short-chain dehydrogenase reductase Sdr
J5A65_09795	COG2226	methyltransferase
J5A65_09810	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5A65_09815	COG0488	(ABC) transporter
J5A65_09835	COG2267	carboxylic ester hydrolase activity
J5A65_09850	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J5A65_09855	COG0396	ATPase activity
J5A65_09895	COG0363	glucosamine-6-phosphate deaminase activity
J5A65_09915	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J5A65_09920	COG0149	triose-phosphate isomerase activity
J5A65_09925	COG0126	phosphoglycerate kinase activity
J5A65_09930	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J5A65_09940	COG0391	Required for morphogenesis under gluconeogenic growth conditions
J5A65_09945	COG1660	Displays ATPase and GTPase activities
J5A65_09950	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
J5A65_09955	COG1122	ATPase activity
J5A65_09970	COG0322	excinuclease ABC activity
J5A65_10000	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
J5A65_10015	COG1309	transcriptional regulator
J5A65_10020	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
J5A65_10035	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
J5A65_10060	COG1739	Uncharacterized protein family UPF0029
J5A65_10080	COG0259	pyridoxamine-phosphate oxidase activity
J5A65_10095	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J5A65_10105	COG2425	protein containing a von Willebrand factor type A (vWA) domain
J5A65_10110	COG3552	Protein containing von Willebrand factor type A (VWA) domain
J5A65_10125	COG3831	ATPase activity
J5A65_10130	COG0714	Associated with various cellular activities
J5A65_10135	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
J5A65_10140	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
J5A65_10145	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
J5A65_10150	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
J5A65_10160	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
J5A65_10185	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
J5A65_10190	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
J5A65_10200	COG2835	tetraacyldisaccharide 4'-kinase activity
J5A65_10255	COG1316	TRANSCRIPTIONal
J5A65_10265	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
J5A65_10285	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J5A65_10295	COG0424	maF-like protein
J5A65_10325	COG4770	biotin carboxylase activity
J5A65_10330	COG1045	serine acetyltransferase
J5A65_10360	COG1609	Transcriptional regulator
J5A65_10365	COG1070	Carbohydrate kinase
J5A65_10380	COG1172	Belongs to the binding-protein-dependent transport system permease family
J5A65_10390	COG0191	fructose-bisphosphate aldolase activity
J5A65_10425	COG1704	LemA family
J5A65_10430	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
J5A65_10445	COG0515	serine threonine protein kinase
J5A65_10445	COG2815	serine threonine protein kinase
J5A65_10455	COG0631	protein serine/threonine phosphatase activity
J5A65_10475	COG0714	Associated with various cellular activities
J5A65_10485	COG2319	Wd-40 repeat
J5A65_10485	COG4249	Peptidase C14 caspase catalytic subunit p20
J5A65_10490	COG0534	Mate efflux family protein
J5A65_10495	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5A65_10500	COG1113	amino acid transport
J5A65_10515	COG5012	cobalamin binding
J5A65_10545	COG0542	response to heat
J5A65_10550	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
J5A65_10570	COG1404	Belongs to the peptidase S8 family
J5A65_10580	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J5A65_10580	COG0352	thiamine-phosphate diphosphorylase activity
J5A65_10580	COG0351	phosphomethylpyrimidine kinase
J5A65_10585	COG0351	phosphomethylpyrimidine kinase
J5A65_10590	COG0351	phosphomethylpyrimidine kinase
J5A65_10590	COG0352	thiamine-phosphate diphosphorylase activity
J5A65_10590	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J5A65_10600	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_10605	COG1120	ATPase activity
J5A65_10610	COG0574	Belongs to the PEP-utilizing enzyme family
J5A65_10610	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J5A65_10620	COG1404	Belongs to the peptidase S8 family
J5A65_10675	COG4721	ABC-type cobalt transport system, permease component
J5A65_10685	COG0728	peptidoglycan biosynthetic process
J5A65_10690	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
J5A65_10695	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
J5A65_10740	COG3942	CHAP domain
J5A65_10760	COG0358	DNA primase activity
J5A65_10805	COG1192	Involved in chromosome partitioning
J5A65_10810	COG4974	Belongs to the 'phage' integrase family
J5A65_10840	COG1309	transcriptional regulator
J5A65_10845	COG2986	histidine ammonia-lyase
J5A65_10855	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
J5A65_10915	COG0314	molybdopterin synthase activity
J5A65_10920	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
J5A65_10945	COG1120	ATPase activity
J5A65_10985	COG0746	molybdenum cofactor guanylyltransferase activity
J5A65_11000	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J5A65_11020	COG1140	nitrate reductase beta subunit
J5A65_11050	COG0431	NADPH-dependent FMN reductase
J5A65_11055	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5A65_11060	COG1120	ATPase activity
J5A65_11065	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J5A65_11070	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_11075	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_11080	COG3048	D-serine ammonia-lyase activity
J5A65_11085	COG3237	CsbD-like
J5A65_11090	COG1472	Belongs to the glycosyl hydrolase 3 family
J5A65_11095	COG3254	rhamnose metabolic process
J5A65_11105	COG1174	glycine betaine transport
J5A65_11110	COG1174	glycine betaine transport
J5A65_11115	COG0517	IMP dehydrogenase activity
J5A65_11115	COG1125	glycine betaine transport
J5A65_11125	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5A65_11130	COG1321	iron dependent repressor
J5A65_11145	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
J5A65_11170	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
J5A65_11180	COG2252	PERMEase
J5A65_11190	COG1278	Cold shock
J5A65_11195	COG0363	glucosamine-6-phosphate deaminase activity
J5A65_11205	COG0494	nUDIX hydrolase
J5A65_11210	COG3142	Participates in the control of copper homeostasis
J5A65_11215	COG1132	(ABC) transporter
J5A65_11220	COG2375	cellular response to nickel ion
J5A65_11220	COG1132	(ABC) transporter
J5A65_11250	COG0275	rRNA processing
J5A65_11260	COG3842	ATPase activity
J5A65_11270	COG0626	cystathionine gamma-synthase activity
J5A65_11275	COG1882	Formate acetyltransferase
J5A65_11285	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J5A65_11290	COG3093	addiction module antidote protein HigA
J5A65_11305	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
J5A65_11315	COG4303	Ethanolamine ammonia lyase large subunit
J5A65_11320	COG4302	ethanolamine ammonia-lyase activity
J5A65_11325	COG1802	Transcriptional regulator
J5A65_11340	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J5A65_11350	COG1115	amino acid carrier protein
J5A65_11355	COG1454	alcohol dehydrogenase
J5A65_11370	COG0444	Belongs to the ABC transporter superfamily
J5A65_11375	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5A65_11380	COG0601	transmembrane transport
J5A65_11390	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J5A65_11405	COG2826	transposase and inactivated derivatives, IS30 family
J5A65_11460	COG1201	RNA secondary structure unwinding
J5A65_11470	COG3541	Predicted nucleotidyltransferase
J5A65_11485	COG0215	cysteine-tRNA ligase activity
J5A65_11495	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J5A65_11525	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
J5A65_11530	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
J5A65_11535	COG1329	Transcriptional regulator
J5A65_11540	COG0745	RESPONSE REGULATOR receiver
J5A65_11545	COG5002	protein histidine kinase activity
J5A65_11550	COG0704	Plays a role in the regulation of phosphate uptake
J5A65_11560	COG0726	polysaccharide deacetylase
J5A65_11565	COG0588	phosphoglycerate mutase activity
J5A65_11570	COG0038	chloride channel
J5A65_11635	COG1472	Belongs to the glycosyl hydrolase 3 family
J5A65_11700	COG1028	Short-chain dehydrogenase reductase Sdr
J5A65_11710	COG0022	dehydrogenase e1 component
J5A65_11715	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5A65_11720	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5A65_11725	COG1349	DNA-binding transcription factor activity
J5A65_11750	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
J5A65_11770	COG1203	CRISPR-associated helicase, Cas3
J5A65_11780	COG1468	defense response to virus
J5A65_11780	COG1518	maintenance of DNA repeat elements
J5A65_11785	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
J5A65_11795	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
J5A65_11820	COG4191	Histidine kinase
J5A65_11825	COG0745	RESPONSE REGULATOR receiver
J5A65_11900	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J5A65_11905	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
J5A65_11905	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
J5A65_11935	COG0148	phosphopyruvate hydratase activity
J5A65_11945	COG2304	oxidoreductase activity
J5A65_11970	COG0193	aminoacyl-tRNA hydrolase activity
J5A65_11975	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
J5A65_12000	COG2094	Belongs to the DNA glycosylase MPG family
J5A65_12010	COG1131	(ABC) transporter
J5A65_12025	COG0577	efflux transmembrane transporter activity
J5A65_12030	COG0577	efflux transmembrane transporter activity
J5A65_12030	COG1136	(ABC) transporter
J5A65_12045	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J5A65_12050	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
J5A65_12065	COG0519	Catalyzes the synthesis of GMP from XMP
J5A65_12080	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
J5A65_12085	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J5A65_12090	COG0084	hydrolase, TatD family'
J5A65_12115	COG2233	PERMEase
J5A65_12120	COG0133	tryptophan synthase activity
J5A65_12130	COG0604	alcohol dehydrogenase
J5A65_12130	COG4221	oxidoreductase activity
J5A65_12130	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5A65_12130	COG3321	synthase
J5A65_12150	COG1309	transcriptional regulator
J5A65_12155	COG2814	Major facilitator Superfamily
J5A65_12170	COG1063	alcohol dehydrogenase
J5A65_12180	COG0667	Aldo Keto reductase
J5A65_12190	COG0477	Major facilitator Superfamily
J5A65_12210	COG2205	protein histidine kinase activity
J5A65_12215	COG0745	RESPONSE REGULATOR receiver
J5A65_12220	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5A65_12220	COG0785	Cytochrome C biogenesis protein
J5A65_12255	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J5A65_12265	COG1090	epimerase
J5A65_12280	COG0747	negative chemotaxis
J5A65_12365	COG1970	mechanosensitive ion channel activity
J5A65_12380	COG0673	inositol 2-dehydrogenase activity
J5A65_12390	COG1175	transmembrane transport
J5A65_12395	COG0395	ABC-type sugar transport system, permease component
J5A65_12420	COG0281	malic enzyme
J5A65_12475	COG1309	transcriptional regulator
J5A65_12480	COG0477	Major facilitator Superfamily
J5A65_12515	COG1733	regulation of RNA biosynthetic process
J5A65_12540	COG1848	Toxic component of a toxin-antitoxin (TA) module. An RNase
J5A65_12555	COG0012	GTP binding
J5A65_12560	COG1362	aminopeptidase activity
J5A65_12580	COG0464	growth
J5A65_12595	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
J5A65_12610	COG1570	exodeoxyribonuclease VII activity
J5A65_12615	COG1722	exodeoxyribonuclease VII activity
J5A65_12630	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J5A65_12640	COG1774	PSP1 C-terminal conserved region
J5A65_12650	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J5A65_12655	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
J5A65_12665	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J5A65_12665	COG1754	DNA topoisomerase type I activity
J5A65_12685	COG1940	carbohydrate kinase activity
J5A65_12690	COG1136	(ABC) transporter
J5A65_12700	COG0577	efflux transmembrane transporter activity
J5A65_12705	COG0018	arginyl-trna synthetase
J5A65_12710	COG0656	L-ascorbic acid biosynthetic process
J5A65_12715	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
J5A65_12755	COG1716	ATPase activity
J5A65_12770	COG0768	penicillin binding
J5A65_12775	COG0515	serine threonine protein kinase
J5A65_12820	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J5A65_12835	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
J5A65_12845	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_12850	COG1120	ATPase activity
J5A65_12920	COG2197	response regulator
J5A65_12930	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
J5A65_12965	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
J5A65_13015	COG3263	regulation of cellular component size
J5A65_13045	COG0438	transferase activity, transferring glycosyl groups
J5A65_13050	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5A65_13055	COG0037	tRNA processing
J5A65_13065	COG2027	D-alanyl-D-alanine carboxypeptidase
J5A65_13070	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
J5A65_13130	COG1252	NADH dehydrogenase
J5A65_13140	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
J5A65_13160	COG2259	Doxx family
J5A65_13180	COG0745	RESPONSE REGULATOR receiver
J5A65_13185	COG2205	protein histidine kinase activity
J5A65_13195	COG3739	integral membrane protein
J5A65_13200	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
J5A65_13205	COG1132	(ABC) transporter
J5A65_13210	COG1132	(ABC) transporter
J5A65_13215	COG2375	cellular response to nickel ion
J5A65_13215	COG1132	(ABC) transporter
J5A65_13230	COG1136	(ABC) transporter
J5A65_13245	COG2826	transposase and inactivated derivatives, IS30 family
J5A65_13285	COG0717	Belongs to the dCTP deaminase family
J5A65_13295	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
J5A65_13315	COG1960	acyl-CoA dehydrogenase activity
J5A65_13320	COG3321	synthase
J5A65_13330	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J5A65_13345	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5A65_13350	COG0156	8-amino-7-oxononanoate synthase activity
J5A65_13355	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5A65_13395	COG1012	belongs to the aldehyde dehydrogenase family
J5A65_13415	COG1131	(ABC) transporter
J5A65_13450	COG3022	response to hydroperoxide
J5A65_13455	COG2249	NAD(P)H dehydrogenase (quinone) activity
J5A65_13470	COG1131	(ABC) transporter
J5A65_13495	COG0789	Transcriptional regulator
J5A65_13525	COG0673	inositol 2-dehydrogenase activity
J5A65_13560	COG1120	ATPase activity
J5A65_13600	COG0433	COG0433 Predicted ATPase
J5A65_13650	COG1113	amino acid transport
J5A65_13680	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
J5A65_13715	COG1674	ftsk spoiiie
J5A65_13755	COG0714	Associated with various cellular activities
J5A65_13770	COG0584	glycerophosphoryl diester phosphodiesterase
J5A65_13825	COG2340	Cysteine-rich secretory protein family
J5A65_13830	COG0745	RESPONSE REGULATOR receiver
J5A65_13835	COG5002	protein histidine kinase activity
J5A65_13840	COG0577	efflux transmembrane transporter activity
J5A65_13840	COG1136	(ABC) transporter
J5A65_13860	COG1132	(ABC) transporter
J5A65_13865	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
J5A65_13905	COG1401	restriction endodeoxyribonuclease activity
J5A65_13915	COG4804	nuclease activity
J5A65_13925	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
J5A65_13930	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J5A65_13935	COG1111	helicase
J5A65_13935	COG1205	dead DEAH box helicase
J5A65_14005	COG1129	ABC transporter
J5A65_14050	COG0564	pseudouridine synthase activity
J5A65_14095	COG0604	alcohol dehydrogenase
J5A65_14095	COG1028	Short-chain dehydrogenase reductase Sdr
J5A65_14095	COG3321	synthase
J5A65_14100	COG0137	argininosuccinate synthase activity
J5A65_14110	COG1216	Glycosyl transferase, family 2
J5A65_14125	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
J5A65_14135	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
J5A65_14145	COG1129	ABC transporter
J5A65_14165	COG4917	ethanolamine utilization protein
J5A65_14210	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
J5A65_14240	COG0039	L-malate dehydrogenase activity
J5A65_14300	COG0442	prolyl-tRNA aminoacylation
J5A65_14370	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J5A65_14375	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J5A65_14380	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J5A65_14385	COG1696	Membrane protein involved in D-alanine export
J5A65_14395	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
J5A65_14420	COG0519	Catalyzes the synthesis of GMP from XMP
J5A65_14430	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J5A65_14445	COG0733	neurotransmitter:sodium symporter activity
J5A65_14455	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J5A65_14460	COG1408	metallophosphoesterase
J5A65_14480	COG3012	SEC-C Motif Domain Protein
J5A65_14500	COG3591	Belongs to the peptidase S1B family
J5A65_14550	COG1051	belongs to the nudix hydrolase family
J5A65_14555	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J5A65_14570	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J5A65_14580	COG0653	protein targeting
J5A65_14595	COG0521	Mo-molybdopterin cofactor biosynthetic process
J5A65_14595	COG0315	cyclic pyranopterin monophosphate synthase activity
J5A65_14635	COG1120	ATPase activity
J5A65_14660	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
J5A65_14670	COG3177	Filamentation induced by cAMP protein fic
J5A65_14690	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J5A65_14700	COG0705	Rhomboid family
J5A65_14700	COG0457	Tetratricopeptide repeat
J5A65_14705	COG0768	penicillin binding
J5A65_14740	COG1309	transcriptional regulator
J5A65_14750	COG2184	nucleotidyltransferase activity
J5A65_14780	COG1120	ATPase activity
J5A65_14785	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_14790	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J5A65_14800	COG0783	Belongs to the Dps family
J5A65_14890	COG1971	Probably functions as a manganese efflux pump
J5A65_14895	COG2390	Transcriptional regulator
J5A65_14905	COG1024	Enoyl-CoA hydratase
J5A65_14910	COG1505	serine-type exopeptidase activity
J5A65_14930	COG0492	ferredoxin-NADP+ reductase activity
J5A65_14950	COG1181	Belongs to the D-alanine--D-alanine ligase family
J5A65_14960	COG1192	Involved in chromosome partitioning
J5A65_14980	COG0357	Ribosomal RNA small subunit methyltransferase G
J5A65_14990	COG0706	membrane insertase activity
J5A65_14995	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
J5A65_15000	COG0594	ribonuclease P activity
J5A65_15005	COG0230	Belongs to the bacterial ribosomal protein bL34 family
J5A65_15010	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J5A65_15015	COG0592	DNA-directed DNA polymerase activity
J5A65_15025	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP