Arch_0001 PF00308 Bacterial dnaA protein Arch_0001 PF08299 Bacterial dnaA protein helix-turn-helix Arch_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Arch_0002 PF02767 DNA polymerase III beta subunit, central domain Arch_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Arch_0003 PF02463 RecF/RecN/SMC N terminal domain Arch_0004 PF05258 Arch_0004 Arch_0005 PF00204 DNA gyrase B Arch_0005 PF00986 DNA gyrase B subunit, carboxyl terminus Arch_0005 PF01751 Toprim domain Arch_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Arch_0006 PF00521 DNA gyrase/topoisomerase IV, subunit A Arch_0006 PF03989 DNA gyrase C-terminal domain, beta-propeller Arch_0007 PF12089 Arch_0007 Arch_0009 PF04326 Divergent AAA domain Arch_0009 PF13749 ATP-dependent DNA helicase recG C-terminal Arch_0010 PF00754 F5/8 type C domain Arch_0011 PF00884 Sulfatase Arch_0012 PF01636 Phosphotransferase enzyme family Arch_0013 PF09508 Lacto-N-biose phosphorylase Arch_0013 PF17385 Arch_0013 Arch_0013 PF17386 Arch_0013 Arch_0014 PF00480 ROK family Arch_0014 PF09339 IclR helix-turn-helix domain Arch_0015 PF03616 Arch_0015 Arch_0016 PF00583 Acetyltransferase (GNAT) family Arch_0017 PF00440 Bacterial regulatory proteins, tetR family Arch_0019 PF02652 Arch_0019 Arch_0020 PF02754 Arch_0020 Arch_0021 PF02589 Uncharacterised ACR, YkgG family COG1556 Arch_0021 PF11870 Arch_0021 Arch_0021 PF13183 4Fe-4S dicluster domain Arch_0022 PF02589 Uncharacterised ACR, YkgG family COG1556 Arch_0025 PF02872 5'-nucleotidase, C-terminal domain Arch_0026 PF13088 BNR repeat-like domain Arch_0028 PF02028 BCCT family transporter Arch_0029 PF00892 EamA-like transporter family Arch_0031 PF00746 Arch_0031 Arch_0032 PF04203 Sortase family Arch_0033 PF00150 Cellulase (glycosyl hydrolase family 5) Arch_0034 PF01074 Glycosyl hydrolases family 38 N-terminal domain Arch_0034 PF07748 Glycosyl hydrolases family 38 C-terminal domain Arch_0034 PF09261 Alpha mannosidase, middle domain Arch_0035 PF00356 Bacterial regulatory proteins, lacI family Arch_0035 PF13377 Periplasmic binding protein-like domain Arch_0036 PF00294 pfkB family carbohydrate kinase Arch_0037 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Arch_0038 PF00107 Zinc-binding dehydrogenase Arch_0038 PF08240 Alcohol dehydrogenase GroES-like domain Arch_0039 PF00083 Sugar (and other) transporter Arch_0041 PF01261 Xylose isomerase-like TIM barrel Arch_0042 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Arch_0042 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Arch_0043 PF00923 Transaldolase Arch_0044 PF00392 Bacterial regulatory proteins, gntR family Arch_0044 PF07702 UTRA domain Arch_0045 PF00294 pfkB family carbohydrate kinase Arch_0047 PF04962 KduI/IolB family Arch_0048 PF00205 Thiamine pyrophosphate enzyme, central domain Arch_0048 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Arch_0048 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Arch_0049 PF00171 Aldehyde dehydrogenase family Arch_0050 PF07171 MlrC C-terminus Arch_0050 PF07364 Protein of unknown function (DUF1485) Arch_0051 PF00480 ROK family Arch_0051 PF13412 Winged helix-turn-helix DNA-binding Arch_0052 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Arch_0053 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0054 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0054 PF12911 Arch_0054 Arch_0055 PF00005 ABC transporter Arch_0055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Arch_0056 PF00480 ROK family Arch_0057 PF01120 Alpha-L-fucosidase Arch_0058 PF03932 CutC family Arch_0059 PF13641 Glycosyltransferase like family 2 Arch_0060 PF03009 Glycerophosphoryl diester phosphodiesterase family Arch_0061 PF07690 Major Facilitator Superfamily Arch_0064 PF00089 Trypsin Arch_0065 PF04235 Arch_0065 Arch_0067 PF16363 Arch_0067 Arch_0068 PF00005 ABC transporter Arch_0068 PF14524 Wzt C-terminal domain Arch_0069 PF01061 Arch_0069 Arch_0071 PF00534 Glycosyl transferases group 1 Arch_0071 PF00535 Glycosyl transferase family 2 Arch_0072 PF00535 Glycosyl transferase family 2 Arch_0073 PF10066 Arch_0073 Arch_0074 PF13231 Arch_0074 Arch_0075 PF10066 Arch_0075 Arch_0076 PF00535 Glycosyl transferase family 2 Arch_0077 PF09913 Arch_0077 Arch_0079 PF00535 Glycosyl transferase family 2 Arch_0080 PF00535 Glycosyl transferase family 2 Arch_0081 PF04991 Arch_0081 Arch_0082 PF00892 EamA-like transporter family Arch_0083 PF01633 Choline/ethanolamine kinase Arch_0083 PF12804 MobA-like NTP transferase domain Arch_0083 PF13412 Winged helix-turn-helix DNA-binding Arch_0084 PF13439 Glycosyltransferase Family 4 Arch_0084 PF13692 Glycosyl transferases group 1 Arch_0086 PF04321 RmlD substrate binding domain Arch_0088 PF13304 AAA domain Arch_0089 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Arch_0092 PF00535 Glycosyl transferase family 2 Arch_0093 PF00483 Nucleotidyl transferase Arch_0094 PF00892 EamA-like transporter family Arch_0096 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Arch_0097 PF01694 Rhomboid family Arch_0098 PF06781 Arch_0098 Arch_0099 PF04203 Sortase family Arch_0101 PF01548 Arch_0101 Arch_0101 PF02371 Arch_0101 Arch_0102 PF00069 Protein kinase domain Arch_0102 PF03793 PASTA domain Arch_0103 PF00905 Penicillin binding protein transpeptidase domain Arch_0104 PF01098 Arch_0104 Arch_0105 PF13672 Protein phosphatase 2C Arch_0106 PF00498 FHA domain Arch_0107 PF12401 Protein of unknown function (DUF2662) Arch_0107 PF16697 Arch_0107 Arch_0108 PF03458 Arch_0108 Arch_0109 PF01661 Macro domain Arch_0110 PF00075 RNase H Arch_0111 PF00326 Prolyl oligopeptidase family Arch_0111 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Arch_0113 PF01048 Phosphorylase superfamily Arch_0114 PF02664 S-Ribosylhomocysteinase (LuxS) Arch_0115 PF00462 Glutaredoxin Arch_0116 PF07972 NrdI Flavodoxin like Arch_0117 PF00317 Ribonucleotide reductase, all-alpha domain Arch_0117 PF02867 Ribonucleotide reductase, barrel domain Arch_0117 PF08343 Ribonucleotide reductase N-terminal Arch_0119 PF00268 Ribonucleotide reductase, small chain Arch_0121 PF01451 Low molecular weight phosphotyrosine protein phosphatase Arch_0122 PF10263 Arch_0122 Arch_0124 PF00005 ABC transporter Arch_0125 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0126 PF00497 Bacterial extracellular solute-binding proteins, family 3 Arch_0127 PF00271 Helicase conserved C-terminal domain Arch_0127 PF04408 Helicase associated domain (HA2) Arch_0127 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Arch_0127 PF11898 Arch_0127 Arch_0128 PF03372 Endonuclease/Exonuclease/phosphatase family Arch_0129 PF09949 Arch_0129 Arch_0130 PF00392 Bacterial regulatory proteins, gntR family Arch_0130 PF07702 UTRA domain Arch_0131 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Arch_0131 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Arch_0131 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Arch_0131 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Arch_0132 PF03706 Arch_0132 Arch_0133 PF00122 E1-E2 ATPase Arch_0133 PF00403 Heavy-metal-associated domain Arch_0133 PF00702 haloacid dehalogenase-like hydrolase Arch_0134 PF00403 Heavy-metal-associated domain Arch_0136 PF09335 Arch_0136 Arch_0137 PF04020 Arch_0137 Arch_0138 PF14256 Arch_0138 Arch_0140 PF01487 Type I 3-dehydroquinase Arch_0141 PF00156 Phosphoribosyl transferase domain Arch_0142 PF01297 Periplasmic solute binding protein family Arch_0143 PF00005 ABC transporter Arch_0144 PF00950 Arch_0144 Arch_0145 PF00950 Arch_0145 Arch_0146 PF01325 Iron dependent repressor, N-terminal DNA binding domain Arch_0146 PF02742 Iron dependent repressor, metal binding and dimerisation domain Arch_0146 PF04023 FeoA domain Arch_0147 PF00692 dUTPase Arch_0148 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Arch_0148 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Arch_0148 PF04039 Arch_0148 Arch_0148 PF13244 Arch_0148 Arch_0149 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Arch_0150 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Arch_0151 PF01899 Arch_0151 Arch_0152 PF04066 Arch_0152 Arch_0153 PF03334 Arch_0153 Arch_0154 PF14019 Arch_0154 Arch_0155 PF13343 Bacterial extracellular solute-binding protein Arch_0156 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0157 PF00005 ABC transporter Arch_0158 PF00728 Glycosyl hydrolase family 20, catalytic domain Arch_0159 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0160 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0161 PF13416 Bacterial extracellular solute-binding protein Arch_0162 PF16268 Arch_0162 Arch_0163 PF05977 Transmembrane secretion effector Arch_0163 PF07690 Major Facilitator Superfamily Arch_0164 PF02388 FemAB family Arch_0165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Arch_0166 PF07883 Cupin domain Arch_0167 PF00326 Prolyl oligopeptidase family Arch_0167 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Arch_0168 PF00012 Hsp70 protein Arch_0169 PF01025 GrpE Arch_0170 PF00226 DnaJ domain Arch_0170 PF01556 DnaJ C terminal domain Arch_0171 PF13411 MerR HTH family regulatory protein Arch_0172 PF00293 NUDIX domain Arch_0173 PF12713 Domain of unknown function (DUF3806) Arch_0174 PF00932 Lamin Tail Domain Arch_0175 PF04073 Aminoacyl-tRNA editing domain Arch_0176 PF00583 Acetyltransferase (GNAT) family Arch_0177 PF03073 TspO/MBR family Arch_0178 PF00749 tRNA synthetases class I (E and Q), catalytic domain Arch_0179 PF14013 Arch_0179 Arch_0180 PF00004 ATPase family associated with various cellular activities (AAA) Arch_0180 PF02861 Clp amino terminal domain Arch_0180 PF07724 AAA domain (Cdc48 subfamily) Arch_0180 PF10431 C-terminal, D2-small domain, of ClpB protein Arch_0181 PF00324 Amino acid permease Arch_0182 PF01658 Myo-inositol-1-phosphate synthase Arch_0183 PF00144 Beta-lactamase Arch_0184 PF03372 Endonuclease/Exonuclease/phosphatase family Arch_0185 PF00106 short chain dehydrogenase Arch_0187 PF00293 NUDIX domain Arch_0190 PF00588 SpoU rRNA Methylase family Arch_0191 PF04480 Protein of unknown function (DUF559) Arch_0192 PF01116 Fructose-bisphosphate aldolase class-II Arch_0193 PF13320 Arch_0193 Arch_0194 PF01547 Bacterial extracellular solute-binding protein Arch_0195 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0196 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0200 PF00821 Phosphoenolpyruvate carboxykinase Arch_0200 PF17297 Arch_0200 Arch_0201 PF01259 SAICAR synthetase Arch_0202 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Arch_0202 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Arch_0203 PF00149 Calcineurin-like phosphoesterase Arch_0203 PF02872 5'-nucleotidase, C-terminal domain Arch_0205 PF11273 Arch_0205 Arch_0206 PF12728 Helix-turn-helix domain Arch_0207 PF12277 Arch_0207 Arch_0208 PF07332 Arch_0208 Arch_0209 PF03023 Arch_0209 Arch_0210 PF00924 Mechanosensitive ion channel Arch_0211 PF01641 SelR domain Arch_0212 PF03372 Endonuclease/Exonuclease/phosphatase family Arch_0213 PF00892 EamA-like transporter family Arch_0215 PF12849 PBP superfamily domain Arch_0216 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0217 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0218 PF00005 ABC transporter Arch_0219 PF01384 Arch_0219 Arch_0220 PF01865 Protein of unknown function DUF47 Arch_0221 PF01235 Arch_0221 Arch_0224 PF08768 Domain of unknown function (DUF1794) Arch_0225 PF01571 Aminomethyltransferase folate-binding domain Arch_0225 PF08669 Glycine cleavage T-protein C-terminal barrel domain Arch_0226 PF02580 D-Tyr-tRNA(Tyr) deacylase Arch_0227 PF00004 ATPase family associated with various cellular activities (AAA) Arch_0227 PF02151 UvrB/uvrC motif Arch_0227 PF02861 Clp amino terminal domain Arch_0227 PF07724 AAA domain (Cdc48 subfamily) Arch_0227 PF10431 C-terminal, D2-small domain, of ClpB protein Arch_0228 PF16569 Arch_0228 Arch_0229 PF04203 Sortase family Arch_0232 PF01548 Arch_0232 Arch_0232 PF02371 Arch_0232 Arch_0238 PF03553 Arch_0238 Arch_0238 PF13726 Arch_0238 Arch_0239 PF00149 Calcineurin-like phosphoesterase Arch_0239 PF02872 5'-nucleotidase, C-terminal domain Arch_0240 PF00391 PEP-utilising enzyme, mobile domain Arch_0240 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Arch_0240 PF02896 PEP-utilising enzyme, TIM barrel domain Arch_0241 PF01757 Arch_0241 Arch_0243 PF12146 Putative lysophospholipase Arch_0244 PF00801 PKD domain Arch_0244 PF13472 GDSL-like Lipase/Acylhydrolase family Arch_0246 PF00877 NlpC/P60 family Arch_0247 PF00719 Inorganic pyrophosphatase Arch_0248 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Arch_0249 PF10103 Uncharacterised conserved protein (DUF2342) Arch_0250 PF01171 PP-loop family Arch_0251 PF00004 ATPase family associated with various cellular activities (AAA) Arch_0251 PF01434 Peptidase family M41 Arch_0252 PF01227 GTP cyclohydrolase I Arch_0253 PF00809 Pterin binding enzyme Arch_0254 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Arch_0254 PF02152 Dihydroneopterin aldolase Arch_0255 PF11377 Arch_0255 Arch_0256 PF03703 Arch_0256 Arch_0257 PF03703 Arch_0257 Arch_0258 PF10727 Rossmann-like domain Arch_0258 PF10728 Domain of unknown function (DUF2520) Arch_0259 PF02569 Pantoate-beta-alanine ligase Arch_0260 PF02261 Aspartate decarboxylase Arch_0261 PF00152 tRNA synthetases class II (D, K and N) Arch_0261 PF01336 OB-fold nucleic acid binding domain Arch_0262 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Arch_0262 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Arch_0263 PF00230 Major intrinsic protein Arch_0265 PF02754 Arch_0265 Arch_0265 PF13183 4Fe-4S dicluster domain Arch_0266 PF00890 FAD binding domain Arch_0267 PF01266 FAD dependent oxidoreductase Arch_0267 PF04324 BFD-like [2Fe-2S] binding domain Arch_0268 PF04198 Putative sugar-binding domain Arch_0268 PF13384 Homeodomain-like domain Arch_0269 PF00633 Helix-hairpin-helix motif Arch_0269 PF00730 HhH-GPD superfamily base excision DNA repair protein Arch_0270 PF00440 Bacterial regulatory proteins, tetR family Arch_0271 PF07690 Major Facilitator Superfamily Arch_0272 PF00083 Sugar (and other) transporter Arch_0272 PF07690 Major Facilitator Superfamily Arch_0273 PF13304 AAA domain Arch_0276 PF05362 Lon protease (S16) C-terminal proteolytic domain Arch_0276 PF13481 AAA domain Arch_0277 PF02080 TrkA-C domain Arch_0277 PF02254 TrkA-N domain Arch_0278 PF02386 Cation transport protein Arch_0279 PF12728 Helix-turn-helix domain Arch_0280 PF12802 MarR family Arch_0281 PF00300 Histidine phosphatase superfamily (branch 1) Arch_0282 PF13396 Arch_0282 Arch_0283 PF01040 UbiA prenyltransferase family Arch_0284 PF00501 AMP-binding enzyme Arch_0284 PF13193 AMP-binding enzyme C-terminal domain Arch_0285 PF00378 Enoyl-CoA hydratase/isomerase family Arch_0286 PF13649 Methyltransferase domain Arch_0287 PF13378 Enolase C-terminal domain-like Arch_0288 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Arch_0288 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Arch_0289 PF13180 PDZ domain Arch_0289 PF13365 Trypsin-like peptidase domain Arch_0290 PF00425 chorismate binding enzyme Arch_0291 PF01209 ubiE/COQ5 methyltransferase family Arch_0292 PF01494 FAD binding domain Arch_0293 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Arch_0294 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Arch_0295 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Arch_0296 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Arch_0297 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Arch_0298 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Arch_0298 PF10531 SLBB domain Arch_0298 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Arch_0299 PF00384 Molybdopterin oxidoreductase Arch_0299 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Arch_0299 PF13510 2Fe-2S iron-sulfur cluster binding domain Arch_0300 PF00146 NADH dehydrogenase Arch_0301 PF12838 4Fe-4S dicluster domain Arch_0302 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Arch_0303 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Arch_0304 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Arch_0304 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Arch_0305 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Arch_0306 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Arch_0307 PF00348 Polyprenyl synthetase Arch_0308 PF01043 SecA preprotein cross-linking domain Arch_0308 PF07516 SecA Wing and Scaffold domain Arch_0308 PF07517 SecA DEAD-like domain Arch_0309 PF05958 tRNA (Uracil-5-)-methyltransferase Arch_0310 PF01850 PIN domain Arch_0313 PF01476 LysM domain Arch_0315 PF12728 Helix-turn-helix domain Arch_0316 PF08666 SAF domain Arch_0319 PF13476 AAA domain Arch_0319 PF13558 Putative exonuclease SbcCD, C subunit Arch_0320 PF00149 Calcineurin-like phosphoesterase Arch_0320 PF12320 Type 5 capsule protein repressor C-terminal domain Arch_0322 PF07373 Arch_0322 Arch_0324 PF16264 Arch_0324 Arch_0326 PF03193 Protein of unknown function, DUF258 Arch_0327 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Arch_0329 PF00392 Bacterial regulatory proteins, gntR family Arch_0329 PF07729 FCD domain Arch_0330 PF00480 ROK family Arch_0331 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Arch_0332 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Arch_0333 PF01979 Amidohydrolase family Arch_0334 PF04542 Sigma-70 region 2 Arch_0334 PF08281 Sigma-70, region 4 Arch_0337 PF01145 SPFH domain / Band 7 family Arch_0341 PF01850 PIN domain Arch_0342 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Arch_0343 PF13472 GDSL-like Lipase/Acylhydrolase family Arch_0346 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Arch_0346 PF00676 Dehydrogenase E1 component Arch_0346 PF02779 Transketolase, pyrimidine binding domain Arch_0346 PF16078 Arch_0346 Arch_0346 PF16870 Arch_0346 Arch_0347 PF00571 CBS domain Arch_0347 PF01595 Arch_0347 Arch_0347 PF03471 Transporter associated domain Arch_0348 PF00571 CBS domain Arch_0348 PF01595 Arch_0348 Arch_0349 PF01551 Peptidase family M23 Arch_0350 PF03009 Glycerophosphoryl diester phosphodiesterase family Arch_0351 PF00750 tRNA synthetases class I (R) Arch_0351 PF03485 Arginyl tRNA synthetase N terminal domain Arch_0351 PF05746 DALR anticodon binding domain Arch_0354 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Arch_0354 PF07497 Rho termination factor, RNA-binding domain Arch_0355 PF01197 Ribosomal protein L31 Arch_0356 PF00472 RF-1 domain Arch_0356 PF03462 PCRF domain Arch_0357 PF05175 Methyltransferase small domain Arch_0358 PF01300 Telomere recombination Arch_0359 PF00953 Glycosyl transferase family 4 Arch_0361 PF00119 ATP synthase A chain Arch_0362 PF00137 ATP synthase subunit C Arch_0363 PF00430 ATP synthase B/B' CF(0) Arch_0364 PF00213 ATP synthase delta (OSCP) subunit Arch_0365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Arch_0365 PF00306 ATP synthase alpha/beta chain, C terminal domain Arch_0365 PF02874 ATP synthase alpha/beta family, beta-barrel domain Arch_0366 PF00231 ATP synthase Arch_0367 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Arch_0367 PF02874 ATP synthase alpha/beta family, beta-barrel domain Arch_0368 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Arch_0369 PF10739 Arch_0369 Arch_0370 PF01939 Protein of unknown function DUF91 Arch_0372 PF12697 Alpha/beta hydrolase family Arch_0376 PF00085 Thioredoxin Arch_0376 PF14561 Tetratricopeptide repeat Arch_0377 PF00128 Alpha amylase, catalytic domain Arch_0378 PF00356 Bacterial regulatory proteins, lacI family Arch_0378 PF13377 Periplasmic binding protein-like domain Arch_0379 PF13416 Bacterial extracellular solute-binding protein Arch_0380 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0380 PF16296 Arch_0380 Arch_0381 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0382 PF03358 NADPH-dependent FMN reductase Arch_0383 PF00128 Alpha amylase, catalytic domain Arch_0383 PF02806 Alpha amylase, C-terminal all-beta domain Arch_0383 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Arch_0384 PF01636 Phosphotransferase enzyme family Arch_0385 PF00128 Alpha amylase, catalytic domain Arch_0385 PF16657 Arch_0385 Arch_0386 PF00128 Alpha amylase, catalytic domain Arch_0386 PF11896 Domain of unknown function (DUF3416) Arch_0387 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Arch_0388 PF00343 Carbohydrate phosphorylase Arch_0389 PF00579 tRNA synthetases class I (W and Y) Arch_0392 PF00293 NUDIX domain Arch_0393 PF00570 HRDC domain Arch_0393 PF13245 Part of AAA domain Arch_0393 PF13361 UvrD-like helicase C-terminal domain Arch_0395 PF10103 Uncharacterised conserved protein (DUF2342) Arch_0396 PF05362 Lon protease (S16) C-terminal proteolytic domain Arch_0398 PF03699 Arch_0398 Arch_0400 PF00005 ABC transporter Arch_0401 PF00392 Bacterial regulatory proteins, gntR family Arch_0403 PF03551 Transcriptional regulator PadR-like family Arch_0404 PF00005 ABC transporter Arch_0405 PF02687 Arch_0405 Arch_0406 PF12804 MobA-like NTP transferase domain Arch_0407 PF04299 Putative FMN-binding domain Arch_0408 PF00186 Dihydrofolate reductase Arch_0409 PF00303 Thymidylate synthase Arch_0410 PF10698 Arch_0410 Arch_0411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Arch_0411 PF07568 Arch_0411 Arch_0411 PF08448 PAS fold Arch_0411 PF12282 Signal transduction histidine kinase Arch_0412 PF02467 Arch_0412 Arch_0413 PF02687 Arch_0413 Arch_0414 PF00005 ABC transporter Arch_0415 PF00072 Response regulator receiver domain Arch_0415 PF00196 Bacterial regulatory proteins, luxR family Arch_0416 PF07730 Histidine kinase Arch_0417 PF00533 BRCA1 C Terminus (BRCT) domain Arch_0417 PF01653 NAD-dependent DNA ligase adenylation domain Arch_0417 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Arch_0417 PF03120 NAD-dependent DNA ligase OB-fold domain Arch_0417 PF12826 Helix-hairpin-helix motif Arch_0418 PF13091 PLD-like domain Arch_0419 PF02686 Glu-tRNAGln amidotransferase C subunit Arch_0420 PF01425 Amidase Arch_0421 PF02637 GatB domain Arch_0421 PF02934 GatB/GatE catalytic domain Arch_0422 PF00390 Malic enzyme, N-terminal domain Arch_0422 PF03949 Malic enzyme, NAD binding domain Arch_0423 PF11070 Arch_0423 Arch_0424 PF06965 Na+/H+ antiporter 1 Arch_0425 PF08241 Methyltransferase domain Arch_0426 PF06738 Arch_0426 Arch_0426 PF12821 Arch_0426 Arch_0427 PF02080 TrkA-C domain Arch_0427 PF06826 Arch_0427 Arch_0428 PF00206 Lyase Arch_0428 PF10415 Fumarase C C-terminus Arch_0430 PF01228 Glycine radical Arch_0430 PF02901 Pyruvate formate lyase Arch_0431 PF01228 Glycine radical Arch_0432 PF04055 Radical SAM superfamily Arch_0432 PF13353 4Fe-4S single cluster domain Arch_0433 PF01168 Alanine racemase, N-terminal domain Arch_0434 PF00270 DEAD/DEAH box helicase Arch_0434 PF00271 Helicase conserved C-terminal domain Arch_0434 PF12029 Arch_0434 Arch_0435 PF00356 Bacterial regulatory proteins, lacI family Arch_0435 PF13377 Periplasmic binding protein-like domain Arch_0436 PF02614 Glucuronate isomerase Arch_0437 PF00294 pfkB family carbohydrate kinase Arch_0438 PF01081 KDPG and KHG aldolase Arch_0439 PF03786 D-mannonate dehydratase (UxuA) Arch_0440 PF01232 Mannitol dehydrogenase Rossmann domain Arch_0440 PF08125 Mannitol dehydrogenase C-terminal domain Arch_0444 PF00005 ABC transporter Arch_0445 PF02687 Arch_0445 Arch_0445 PF12704 MacB-like periplasmic core domain Arch_0447 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Arch_0448 PF00929 Exonuclease Arch_0449 PF00350 Dynamin family Arch_0450 PF00009 Elongation factor Tu GTP binding domain Arch_0451 PF00436 Single-strand binding protein family Arch_0452 PF00005 ABC transporter Arch_0452 PF12848 ABC transporter Arch_0457 PF01844 HNH endonuclease Arch_0459 PF08341 Fibronectin-binding protein signal sequence Arch_0464 PF13274 Arch_0464 Arch_0465 PF00293 NUDIX domain Arch_0466 PF04221 RelB antitoxin Arch_0467 PF06769 Plasmid encoded toxin Txe Arch_0468 PF13622 Thioesterase-like superfamily Arch_0469 PF02446 4-alpha-glucanotransferase Arch_0470 PF00367 phosphotransferase system, EIIB Arch_0471 PF00375 Sodium:dicarboxylate symporter family Arch_0472 PF01226 Formate/nitrite transporter Arch_0473 PF01433 Peptidase family M1 Arch_0473 PF11838 ERAP1-like C-terminal domain Arch_0474 PF01431 Peptidase family M13 Arch_0474 PF05649 Peptidase family M13 Arch_0475 PF02502 Ribose/Galactose Isomerase Arch_0476 PF00132 Bacterial transferase hexapeptide (six repeats) Arch_0476 PF06426 Serine acetyltransferase, N-terminal Arch_0477 PF00291 Pyridoxal-phosphate dependent enzyme Arch_0478 PF01205 Uncharacterized protein family UPF0029 Arch_0479 PF01783 Ribosomal L32p protein family Arch_0482 PF00950 Arch_0482 Arch_0483 PF00005 ABC transporter Arch_0485 PF01297 Periplasmic solute binding protein family Arch_0486 PF02554 Arch_0486 Arch_0486 PF13722 Arch_0486 Arch_0487 PF04328 Arch_0487 Arch_0488 PF00248 Aldo/keto reductase family Arch_0490 PF01022 Bacterial regulatory protein, arsR family Arch_0491 PF01712 Deoxynucleoside kinase Arch_0492 PF03595 Voltage-dependent anion channel Arch_0493 PF00994 Probable molybdopterin binding domain Arch_0494 PF01547 Bacterial extracellular solute-binding protein Arch_0495 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0496 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0497 PF01120 Alpha-L-fucosidase Arch_0503 PF02384 N-6 DNA Methylase Arch_0504 PF07669 Eco57I restriction-modification methylase Arch_0507 PF00665 Integrase core domain Arch_0507 PF13276 Arch_0507 Arch_0512 PF01844 HNH endonuclease Arch_0517 PF00438 S-adenosylmethionine synthetase, N-terminal domain Arch_0517 PF02772 S-adenosylmethionine synthetase, central domain Arch_0517 PF02773 S-adenosylmethionine synthetase, C-terminal domain Arch_0519 PF01555 DNA methylase Arch_0519 PF02195 ParB-like nuclease domain Arch_0521 PF03354 Arch_0521 Arch_0522 PF07799 Arch_0522 Arch_0523 PF04860 Phage portal protein Arch_0526 PF00072 Response regulator receiver domain Arch_0526 PF00196 Bacterial regulatory proteins, luxR family Arch_0529 PF00072 Response regulator receiver domain Arch_0529 PF00196 Bacterial regulatory proteins, luxR family Arch_0530 PF07730 Histidine kinase Arch_0531 PF00005 ABC transporter Arch_0535 PF07683 Cobalamin synthesis protein cobW C-terminal domain Arch_0536 PF00253 Ribosomal protein S14p/S29e Arch_0537 PF00444 Ribosomal protein L36 Arch_0538 PF00830 Ribosomal L28 family Arch_0539 PF00471 Ribosomal protein L33 Arch_0540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Arch_0540 PF05697 Bacterial trigger factor protein (TF) Arch_0540 PF05698 Bacterial trigger factor protein (TF) C-terminus Arch_0541 PF00574 Clp protease Arch_0542 PF00574 Clp protease Arch_0543 PF06689 ClpX C4-type zinc finger Arch_0543 PF07724 AAA domain (Cdc48 subfamily) Arch_0543 PF10431 C-terminal, D2-small domain, of ClpB protein Arch_0544 PF00356 Bacterial regulatory proteins, lacI family Arch_0544 PF13377 Periplasmic binding protein-like domain Arch_0545 PF07690 Major Facilitator Superfamily Arch_0546 PF00459 Inositol monophosphatase family Arch_0547 PF00501 AMP-binding enzyme Arch_0549 PF00133 tRNA synthetases class I (I, L, M and V) Arch_0549 PF08264 Anticodon-binding domain of tRNA Arch_0551 PF00005 ABC transporter Arch_0551 PF00664 ABC transporter transmembrane region Arch_0552 PF00005 ABC transporter Arch_0552 PF00664 ABC transporter transmembrane region Arch_0553 PF00133 tRNA synthetases class I (I, L, M and V) Arch_0553 PF08264 Anticodon-binding domain of tRNA Arch_0554 PF02875 Mur ligase family, glutamate ligase domain Arch_0554 PF08245 Mur ligase middle domain Arch_0555 PF00334 Nucleoside diphosphate kinase Arch_0556 PF02734 DAK2 domain Arch_0557 PF02463 RecF/RecN/SMC N terminal domain Arch_0557 PF06470 SMC proteins Flexible Hinge Domain Arch_0559 PF00448 SRP54-type protein, GTPase domain Arch_0559 PF02881 SRP54-type protein, helical bundle domain Arch_0560 PF00448 SRP54-type protein, GTPase domain Arch_0560 PF02881 SRP54-type protein, helical bundle domain Arch_0560 PF02978 Signal peptide binding domain Arch_0561 PF01979 Amidohydrolase family Arch_0563 PF09056 Prokaryotic phospholipase A2 Arch_0567 PF01545 Cation efflux family Arch_0567 PF16916 Arch_0567 Arch_0568 PF00886 Ribosomal protein S16 Arch_0569 PF13083 KH domain Arch_0570 PF01782 RimM N-terminal domain Arch_0571 PF01746 tRNA (Guanine-1)-methyltransferase Arch_0571 PF13673 Acetyltransferase (GNAT) domain Arch_0572 PF01245 Ribosomal protein L19 Arch_0573 PF00717 Peptidase S24-like Arch_0574 PF01351 Ribonuclease HII Arch_0575 PF10611 Arch_0575 Arch_0576 PF02021 Uncharacterised protein family UPF0102 Arch_0577 PF01078 Magnesium chelatase, subunit ChlI Arch_0577 PF13335 Arch_0577 Arch_0577 PF13541 Subunit ChlI of Mg-chelatase Arch_0578 PF02481 DNA recombination-mediator protein A Arch_0579 PF00589 Phage integrase family Arch_0579 PF02899 Phage integrase, N-terminal SAM-like domain Arch_0580 PF00082 Subtilase family Arch_0582 PF01551 Peptidase family M23 Arch_0583 PF00318 Ribosomal protein S2 Arch_0584 PF00889 Elongation factor TS Arch_0585 PF01012 Electron transfer flavoprotein domain Arch_0586 PF00766 Electron transfer flavoprotein FAD-binding domain Arch_0586 PF01012 Electron transfer flavoprotein domain Arch_0587 PF12831 FAD dependent oxidoreductase Arch_0588 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase Arch_0589 PF00324 Amino acid permease Arch_0590 PF07690 Major Facilitator Superfamily Arch_0591 PF13443 Cro/C1-type HTH DNA-binding domain Arch_0599 PF01479 S4 domain Arch_0600 PF00696 Amino acid kinase family Arch_0601 PF01765 Ribosome recycling factor Arch_0602 PF01148 Cytidylyltransferase family Arch_0603 PF04055 Radical SAM superfamily Arch_0605 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Arch_0605 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Arch_0605 PF13288 DXP reductoisomerase C-terminal domain Arch_0606 PF02163 Peptidase family M50 Arch_0607 PF04551 GcpE protein Arch_0608 PF00583 Acetyltransferase (GNAT) family Arch_0608 PF13312 Arch_0608 Arch_0609 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Arch_0609 PF03129 Anticodon binding domain Arch_0609 PF04073 Aminoacyl-tRNA editing domain Arch_0611 PF02576 Uncharacterised BCR, YhbC family COG0779 Arch_0611 PF17384 Arch_0611 Arch_0612 PF08529 NusA N-terminal domain Arch_0612 PF13184 NusA-like KH domain Arch_0613 PF04296 Protein of unknown function (DUF448) Arch_0614 PF00009 Elongation factor Tu GTP binding domain Arch_0614 PF04760 Translation initiation factor IF-2, N-terminal region Arch_0614 PF11987 Translation-initiation factor 2 Arch_0615 PF02033 Ribosome-binding factor A Arch_0616 PF01509 TruB family pseudouridylate synthase (N terminal domain) Arch_0616 PF16198 Arch_0616 Arch_0617 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) Arch_0619 PF03995 Peptidase inhibitor family I36 Arch_0621 PF03995 Peptidase inhibitor family I36 Arch_0623 PF01471 Putative peptidoglycan binding domain Arch_0624 PF00005 ABC transporter Arch_0625 PF02687 Arch_0625 Arch_0625 PF12704 MacB-like periplasmic core domain Arch_0626 PF01687 Riboflavin kinase Arch_0626 PF06574 FAD synthetase Arch_0628 PF04213 Arch_0628 Arch_0628 PF12799 Leucine Rich repeats (2 copies) Arch_0629 PF01497 Periplasmic binding protein Arch_0630 PF01032 FecCD transport family Arch_0631 PF00005 ABC transporter Arch_0632 PF00312 Ribosomal protein S15 Arch_0633 PF00013 KH domain Arch_0633 PF00575 S1 RNA binding domain Arch_0633 PF01138 3' exoribonuclease family, domain 1 Arch_0633 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Arch_0634 PF12832 MFS_1 like family Arch_0637 PF00753 Metallo-beta-lactamase superfamily Arch_0637 PF07521 RNA-metabolising metallo-beta-lactamase Arch_0638 PF00005 ABC transporter Arch_0638 PF08402 TOBE domain Arch_0639 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0640 PF13343 Bacterial extracellular solute-binding protein Arch_0641 PF00072 Response regulator receiver domain Arch_0641 PF00486 Transcriptional regulatory protein, C terminal Arch_0642 PF00512 His Kinase A (phospho-acceptor) domain Arch_0642 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Arch_0643 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Arch_0644 PF01580 FtsK/SpoIIIE family Arch_0644 PF09397 Ftsk gamma domain Arch_0644 PF13491 Arch_0644 Arch_0645 PF01066 CDP-alcohol phosphatidyltransferase Arch_0646 PF02464 Competence-damaged protein Arch_0647 PF13560 Helix-turn-helix domain Arch_0648 PF11248 Arch_0648 Arch_0649 PF00154 recA bacterial DNA recombination protein Arch_0650 PF02631 RecX family Arch_0651 PF00919 Uncharacterized protein family UPF0004 Arch_0651 PF04055 Radical SAM superfamily Arch_0652 PF01715 IPP transferase Arch_0653 PF05175 Methyltransferase small domain Arch_0654 PF01926 50S ribosome-binding GTPase Arch_0654 PF13167 Arch_0654 Arch_0654 PF16360 Arch_0654 Arch_0655 PF13307 Helicase C-terminal domain Arch_0656 PF00717 Peptidase S24-like Arch_0656 PF01726 LexA DNA binding domain Arch_0657 PF01476 LysM domain Arch_0658 PF03477 ATP cone domain Arch_0659 PF00501 AMP-binding enzyme Arch_0659 PF13193 AMP-binding enzyme C-terminal domain Arch_0660 PF13538 UvrD-like helicase C-terminal domain Arch_0661 PF09754 PAC2 family Arch_0663 PF00817 impB/mucB/samB family Arch_0663 PF11799 impB/mucB/samB family C-terminal domain Arch_0664 PF11239 Arch_0664 Arch_0665 PF02381 MraZ protein Arch_0666 PF01795 MraW methylase family Arch_0668 PF00905 Penicillin binding protein transpeptidase domain Arch_0668 PF03717 Penicillin-binding Protein dimerisation domain Arch_0669 PF01225 Mur ligase family, catalytic domain Arch_0669 PF02875 Mur ligase family, glutamate ligase domain Arch_0669 PF08245 Mur ligase middle domain Arch_0670 PF01225 Mur ligase family, catalytic domain Arch_0670 PF02875 Mur ligase family, glutamate ligase domain Arch_0670 PF08245 Mur ligase middle domain Arch_0671 PF00953 Glycosyl transferase family 4 Arch_0671 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Arch_0672 PF08245 Mur ligase middle domain Arch_0673 PF01098 Arch_0673 Arch_0674 PF03033 Glycosyltransferase family 28 N-terminal domain Arch_0674 PF04101 Glycosyltransferase family 28 C-terminal domain Arch_0675 PF01225 Mur ligase family, catalytic domain Arch_0675 PF02875 Mur ligase family, glutamate ligase domain Arch_0675 PF08245 Mur ligase middle domain Arch_0676 PF03799 Cell division protein FtsQ Arch_0677 PF00091 Tubulin/FtsZ family, GTPase domain Arch_0677 PF12327 FtsZ family, C-terminal domain Arch_0678 PF02578 Multi-copper polyphenol oxidoreductase laccase Arch_0679 PF04472 Protein of unknown function (DUF552) Arch_0680 PF02325 Arch_0680 Arch_0681 PF05103 DivIVA protein Arch_0682 PF01252 Arch_0682 Arch_0683 PF00849 RNA pseudouridylate synthase Arch_0685 PF01336 OB-fold nucleic acid binding domain Arch_0685 PF02811 PHP domain Arch_0685 PF07733 Bacterial DNA polymerase III alpha subunit Arch_0685 PF14579 Helix-hairpin-helix motif Arch_0686 PF13275 S4 domain Arch_0687 PF09335 Arch_0687 Arch_0688 PF01475 Ferric uptake regulator family Arch_0689 PF00950 Arch_0689 Arch_0690 PF00005 ABC transporter Arch_0691 PF01297 Periplasmic solute binding protein family Arch_0692 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Arch_0692 PF03129 Anticodon binding domain Arch_0693 PF07907 Arch_0693 Arch_0694 PF01207 Dihydrouridine synthase (Dus) Arch_0696 PF01966 HD domain Arch_0696 PF13286 Phosphohydrolase-associated domain Arch_0697 PF13407 Periplasmic binding protein domain Arch_0698 PF00005 ABC transporter Arch_0699 PF02653 Arch_0699 Arch_0700 PF00581 Rhodanese-like domain Arch_0701 PF01807 CHC2 zinc finger Arch_0701 PF08275 DNA primase catalytic core, N-terminal domain Arch_0701 PF10410 DnaB-helicase binding domain of primase Arch_0701 PF13662 Toprim domain Arch_0707 PF00801 PKD domain Arch_0707 PF01083 Cutinase Arch_0710 PF01370 NAD dependent epimerase/dehydratase family Arch_0710 PF08338 Domain of unknown function (DUF1731) Arch_0711 PF11343 Arch_0711 Arch_0714 PF01300 Telomere recombination Arch_0715 PF13419 Haloacid dehalogenase-like hydrolase Arch_0716 PF00005 ABC transporter Arch_0716 PF00664 ABC transporter transmembrane region Arch_0717 PF00005 ABC transporter Arch_0717 PF00664 ABC transporter transmembrane region Arch_0718 PF00456 Transketolase, thiamine diphosphate binding domain Arch_0719 PF11253 Arch_0719 Arch_0722 PF00728 Glycosyl hydrolase family 20, catalytic domain Arch_0722 PF00754 F5/8 type C domain Arch_0722 PF02838 Glycosyl hydrolase family 20, domain 2 Arch_0723 PF01784 NIF3 (NGG1p interacting factor 3) Arch_0725 PF03883 Arch_0725 Arch_0726 PF00480 ROK family Arch_0727 PF00557 Metallopeptidase family M24 Arch_0728 PF02548 Ketopantoate hydroxymethyltransferase Arch_0729 PF00120 Glutamine synthetase, catalytic domain Arch_0729 PF03951 Glutamine synthetase, beta-Grasp domain Arch_0730 PF03710 Glutamate-ammonia ligase adenylyltransferase Arch_0730 PF08335 GlnD PII-uridylyltransferase Arch_0731 PF00300 Histidine phosphatase superfamily (branch 1) Arch_0732 PF00120 Glutamine synthetase, catalytic domain Arch_0732 PF03951 Glutamine synthetase, beta-Grasp domain Arch_0733 PF13829 Arch_0733 Arch_0734 PF07690 Major Facilitator Superfamily Arch_0735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Arch_0735 PF00364 Biotin-requiring enzyme Arch_0735 PF02817 e3 binding domain Arch_0736 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Arch_0736 PF07992 Pyridine nucleotide-disulphide oxidoreductase Arch_0738 PF00005 ABC transporter Arch_0739 PF01032 FecCD transport family Arch_0740 PF01032 FecCD transport family Arch_0741 PF01497 Periplasmic binding protein Arch_0742 PF00883 Cytosol aminopeptidase family, catalytic domain Arch_0742 PF02789 Cytosol aminopeptidase family, N-terminal domain Arch_0743 PF11241 Arch_0743 Arch_0744 PF01546 Peptidase family M20/M25/M40 Arch_0744 PF07687 Peptidase dimerisation domain Arch_0746 PF01521 Iron-sulphur cluster biosynthesis Arch_0747 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Arch_0748 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Arch_0748 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Arch_0750 PF00929 Exonuclease Arch_0750 PF01541 GIY-YIG catalytic domain Arch_0752 PF00365 Phosphofructokinase Arch_0753 PF01474 Class-II DAHP synthetase family Arch_0754 PF00069 Protein kinase domain Arch_0754 PF03793 PASTA domain Arch_0755 PF01464 Transglycosylase SLT domain Arch_0755 PF01476 LysM domain Arch_0757 PF00348 Polyprenyl synthetase Arch_0758 PF13830 Arch_0758 Arch_0760 PF00140 Sigma-70 factor, region 1 Arch_0760 PF04539 Sigma-70 region 3 Arch_0760 PF04542 Sigma-70 region 2 Arch_0760 PF04545 Sigma-70, region 4 Arch_0761 PF00929 Exonuclease Arch_0763 PF00204 DNA gyrase B Arch_0763 PF00986 DNA gyrase B subunit, carboxyl terminus Arch_0763 PF01751 Toprim domain Arch_0763 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Arch_0765 PF00583 Acetyltransferase (GNAT) family Arch_0766 PF00521 DNA gyrase/topoisomerase IV, subunit A Arch_0766 PF03989 DNA gyrase C-terminal domain, beta-propeller Arch_0768 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Arch_0769 PF00265 Thymidine kinase Arch_0770 PF11268 Arch_0770 Arch_0771 PF13834 Arch_0771 Arch_0772 PF12502 Arch_0772 Arch_0774 PF11361 Arch_0774 Arch_0775 PF02080 TrkA-C domain Arch_0775 PF02254 TrkA-N domain Arch_0776 PF02080 TrkA-C domain Arch_0776 PF02254 TrkA-N domain Arch_0780 PF01555 DNA methylase Arch_0781 PF04851 Type III restriction enzyme, res subunit Arch_0782 PF00176 SNF2 family N-terminal domain Arch_0782 PF00271 Helicase conserved C-terminal domain Arch_0784 PF00665 Integrase core domain Arch_0784 PF13276 Arch_0784 Arch_0785 PF01527 Transposase Arch_0786 PF00665 Integrase core domain Arch_0786 PF13276 Arch_0786 Arch_0788 PF02687 Arch_0788 Arch_0789 PF00005 ABC transporter Arch_0790 PF02687 Arch_0790 Arch_0791 PF00731 AIR carboxylase Arch_0792 PF01527 Transposase Arch_0793 PF00665 Integrase core domain Arch_0793 PF13276 Arch_0793 Arch_0796 PF00330 Aconitase family (aconitate hydratase) Arch_0796 PF00694 Aconitase C-terminal domain Arch_0797 PF02779 Transketolase, pyrimidine binding domain Arch_0797 PF02780 Transketolase, C-terminal domain Arch_0797 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Arch_0798 PF00570 HRDC domain Arch_0798 PF01612 3'-5' exonuclease Arch_0799 PF11452 Arch_0799 Arch_0800 PF00128 Alpha amylase, catalytic domain Arch_0801 PF00128 Alpha amylase, catalytic domain Arch_0802 PF00128 Alpha amylase, catalytic domain Arch_0802 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Arch_0804 PF01925 Arch_0804 Arch_0806 PF02421 Ferrous iron transport protein B Arch_0806 PF07664 Arch_0806 Arch_0806 PF07670 Nucleoside recognition Arch_0808 PF09223 YodA lipocalin-like domain Arch_0809 PF01297 Periplasmic solute binding protein family Arch_0810 PF00005 ABC transporter Arch_0811 PF00950 Arch_0811 Arch_0812 PF03313 Arch_0812 Arch_0812 PF03315 Serine dehydratase beta chain Arch_0813 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Arch_0813 PF03129 Anticodon binding domain Arch_0813 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Arch_0814 PF01066 CDP-alcohol phosphatidyltransferase Arch_0815 PF03279 Arch_0815 Arch_0816 PF13439 Glycosyltransferase Family 4 Arch_0816 PF13692 Glycosyl transferases group 1 Arch_0818 PF13367 Arch_0818 Arch_0819 PF00293 NUDIX domain Arch_0820 PF01709 Transcriptional regulator Arch_0821 PF02075 Crossover junction endodeoxyribonuclease RuvC Arch_0822 PF01330 RuvA N terminal domain Arch_0822 PF07499 RuvA, C-terminal domain Arch_0822 PF14520 Helix-hairpin-helix domain Arch_0823 PF05491 Holliday junction DNA helicase ruvB C-terminus Arch_0823 PF05496 Holliday junction DNA helicase ruvB N-terminus Arch_0824 PF02699 Preprotein translocase subunit Arch_0825 PF03176 MMPL family Arch_0826 PF02355 Protein export membrane protein Arch_0827 PF00156 Phosphoribosyl transferase domain Arch_0828 PF02824 TGS domain Arch_0828 PF04607 Region found in RelA / SpoT proteins Arch_0828 PF13291 ACT domain Arch_0828 PF13328 HD domain Arch_0830 PF03993 Arch_0830 Arch_0831 PF00753 Metallo-beta-lactamase superfamily Arch_0832 PF03129 Anticodon binding domain Arch_0832 PF13393 Histidyl-tRNA synthetase Arch_0833 PF00350 Dynamin family Arch_0834 PF01926 50S ribosome-binding GTPase Arch_0835 PF00270 DEAD/DEAH box helicase Arch_0835 PF00271 Helicase conserved C-terminal domain Arch_0835 PF03880 DbpA RNA binding domain Arch_0836 PF07690 Major Facilitator Superfamily Arch_0837 PF00152 tRNA synthetases class II (D, K and N) Arch_0837 PF01336 OB-fold nucleic acid binding domain Arch_0837 PF02938 GAD domain Arch_0838 PF03734 L,D-transpeptidase catalytic domain Arch_0839 PF03176 MMPL family Arch_0840 PF05496 Holliday junction DNA helicase ruvB N-terminus Arch_0840 PF12002 MgsA AAA+ ATPase C terminal Arch_0840 PF16193 Arch_0840 Arch_0841 PF00163 Ribosomal protein S4/S9 N-terminal domain Arch_0841 PF01479 S4 domain Arch_0842 PF01411 tRNA synthetases class II (A) Arch_0842 PF02272 DHHA1 domain Arch_0842 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Arch_0843 PF03652 Uncharacterised protein family (UPF0081) Arch_0844 PF02618 YceG-like family Arch_0847 PF01264 Chorismate synthase Arch_0848 PF01202 Shikimate kinase Arch_0848 PF01761 3-dehydroquinate synthase Arch_0850 PF01132 Elongation factor P (EF-P) OB domain Arch_0850 PF08207 Elongation factor P (EF-P) KOW-like domain Arch_0850 PF09285 Elongation factor P, C-terminal Arch_0851 PF01029 NusB family Arch_0853 PF00625 Guanylate kinase Arch_0854 PF01192 RNA polymerase Rpb6 Arch_0855 PF02441 Flavoprotein Arch_0855 PF04127 DNA / pantothenate metabolism flavoprotein Arch_0856 PF00438 S-adenosylmethionine synthetase, N-terminal domain Arch_0856 PF02772 S-adenosylmethionine synthetase, central domain Arch_0856 PF02773 S-adenosylmethionine synthetase, C-terminal domain Arch_0858 PF00551 Formyl transferase Arch_0858 PF02911 Formyl transferase, C-terminal domain Arch_0859 PF01029 NusB family Arch_0859 PF01189 NOL1/NOP2/sun family Arch_0860 PF00834 Ribulose-phosphate 3 epimerase family Arch_0861 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0862 PF09084 NMT1/THI5 like Arch_0863 PF12982 Arch_0863 Arch_0864 PF13280 Arch_0864 Arch_0865 PF13280 Arch_0865 Arch_0866 PF00270 DEAD/DEAH box helicase Arch_0866 PF00271 Helicase conserved C-terminal domain Arch_0866 PF08148 DSHCT (NUC185) domain Arch_0867 PF00795 Carbon-nitrogen hydrolase Arch_0868 PF13397 Domain of unknown function (DUF4109) Arch_0869 PF13411 MerR HTH family regulatory protein Arch_0870 PF13411 MerR HTH family regulatory protein Arch_0871 PF16697 Arch_0871 Arch_0872 PF01433 Peptidase family M1 Arch_0872 PF11838 ERAP1-like C-terminal domain Arch_0873 PF01926 50S ribosome-binding GTPase Arch_0873 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Arch_0874 PF02224 Cytidylate kinase Arch_0875 PF00849 RNA pseudouridylate synthase Arch_0875 PF01479 S4 domain Arch_0876 PF04079 Putative transcriptional regulators (Ypuh-like) Arch_0877 PF02616 ScpA/B protein Arch_0878 PF13614 AAA domain Arch_0879 PF00589 Phage integrase family Arch_0879 PF02899 Phage integrase, N-terminal SAM-like domain Arch_0880 PF00456 Transketolase, thiamine diphosphate binding domain Arch_0880 PF02779 Transketolase, pyrimidine binding domain Arch_0880 PF02780 Transketolase, C-terminal domain Arch_0881 PF03840 Preprotein translocase SecG subunit Arch_0882 PF00121 Triosephosphate isomerase Arch_0883 PF00162 Phosphoglycerate kinase Arch_0884 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Arch_0884 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Arch_0885 PF02650 WhiA C-terminal HTH domain Arch_0885 PF10298 WhiA N-terminal LAGLIDADG-like domain Arch_0885 PF14527 WhiA LAGLIDADG-like domain Arch_0886 PF01933 Uncharacterised protein family UPF0052 Arch_0887 PF03668 Arch_0887 Arch_0889 PF00005 ABC transporter Arch_0890 PF03795 YCII-related domain Arch_0891 PF03741 Arch_0891 Arch_0892 PF00271 Helicase conserved C-terminal domain Arch_0892 PF02151 UvrB/uvrC motif Arch_0892 PF04851 Type III restriction enzyme, res subunit Arch_0892 PF12344 Ultra-violet resistance protein B Arch_0893 PF01121 Dephospho-CoA kinase Arch_0894 PF00575 S1 RNA binding domain Arch_0895 PF08241 Methyltransferase domain Arch_0896 PF00476 DNA polymerase family A Arch_0896 PF01367 5'-3' exonuclease, C-terminal SAM fold Arch_0896 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Arch_0897 PF03061 Thioesterase superfamily Arch_0898 PF00072 Response regulator receiver domain Arch_0898 PF03861 ANTAR domain Arch_0899 PF00224 Pyruvate kinase, barrel domain Arch_0899 PF02887 Pyruvate kinase, alpha/beta domain Arch_0900 PF01790 Arch_0900 Arch_0901 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Arch_0902 PF03136 Pup-ligase protein Arch_0903 PF05639 Pup-like protein Arch_0904 PF03136 Pup-ligase protein Arch_0905 PF00004 ATPase family associated with various cellular activities (AAA) Arch_0905 PF16450 Arch_0905 Arch_0906 PF08704 tRNA methyltransferase complex GCD14 subunit Arch_0906 PF14801 tRNA methyltransferase complex GCD14 subunit N-term Arch_0907 PF12705 PD-(D/E)XK nuclease superfamily Arch_0908 PF13419 Haloacid dehalogenase-like hydrolase Arch_0909 PF02673 Arch_0909 Arch_0910 PF00248 Aldo/keto reductase family Arch_0911 PF07510 Arch_0911 Arch_0913 PF08501 Shikimate dehydrogenase substrate binding domain Arch_0917 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Arch_0921 PF00588 SpoU rRNA Methylase family Arch_0922 PF01381 Helix-turn-helix Arch_0923 PF00588 SpoU rRNA Methylase family Arch_0924 PF01145 SPFH domain / Band 7 family Arch_0925 PF01957 NfeD-like C-terminal, partner-binding Arch_0926 PF00005 ABC transporter Arch_0927 PF00534 Glycosyl transferases group 1 Arch_0927 PF13439 Glycosyltransferase Family 4 Arch_0928 PF00483 Nucleotidyl transferase Arch_0929 PF00005 ABC transporter Arch_0929 PF12848 ABC transporter Arch_0930 PF04228 Arch_0930 Arch_0931 PF01883 Domain of unknown function DUF59 Arch_0932 PF01592 NifU-like N terminal domain Arch_0933 PF00266 Aminotransferase class-V Arch_0934 PF00005 ABC transporter Arch_0935 PF00355 Rieske [2Fe-2S] domain Arch_0936 PF01458 Uncharacterized protein family (UPF0051) Arch_0937 PF01458 Uncharacterized protein family (UPF0051) Arch_0938 PF12802 MarR family Arch_0939 PF00293 NUDIX domain Arch_0940 PF03023 Arch_0940 Arch_0942 PF11382 Arch_0942 Arch_0943 PF12555 Arch_0943 Arch_0944 PF02463 RecF/RecN/SMC N terminal domain Arch_0945 PF01513 ATP-NAD kinase Arch_0946 PF01479 S4 domain Arch_0946 PF01728 FtsJ-like methyltransferase Arch_0948 PF13242 HAD-hyrolase-like Arch_0948 PF13344 Haloacid dehalogenase-like hydrolase Arch_0950 PF00579 tRNA synthetases class I (W and Y) Arch_0952 PF00881 Nitroreductase family Arch_0953 PF01316 Arginine repressor, DNA binding domain Arch_0953 PF02863 Arginine repressor, C-terminal domain Arch_0954 PF00202 Aminotransferase class-III Arch_0955 PF00106 short chain dehydrogenase Arch_0956 PF01588 Putative tRNA binding domain Arch_0956 PF03147 Ferredoxin-fold anticodon binding domain Arch_0956 PF03483 B3/4 domain Arch_0956 PF03484 tRNA synthetase B5 domain Arch_0957 PF01409 tRNA synthetases class II core domain (F) Arch_0957 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Arch_0959 PF00701 Dihydrodipicolinate synthetase family Arch_0960 PF00005 ABC transporter Arch_0961 PF00005 ABC transporter Arch_0961 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0961 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Arch_0962 PF00528 Binding-protein-dependent transport system inner membrane component Arch_0963 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Arch_0964 PF00588 SpoU rRNA Methylase family Arch_0965 PF00453 Ribosomal protein L20 Arch_0966 PF01632 Ribosomal protein L35 Arch_0967 PF00707 Translation initiation factor IF-3, C-terminal domain Arch_0967 PF05198 Translation initiation factor IF-3, N-terminal domain Arch_0968 PF07179 Arch_0968 Arch_0970 PF01988 Arch_0970 Arch_0971 PF01255 Putative undecaprenyl diphosphate synthase Arch_0972 PF02565 Recombination protein O C terminal Arch_0972 PF11967 Recombination protein O N terminal Arch_0973 PF01926 50S ribosome-binding GTPase Arch_0973 PF07650 KH domain Arch_0974 PF00571 CBS domain Arch_0974 PF03471 Transporter associated domain Arch_0975 PF02130 Uncharacterized protein family UPF0054 Arch_0976 PF02562 PhoH-like protein Arch_0977 PF04452 RNA methyltransferase Arch_0978 PF00226 DnaJ domain Arch_0978 PF00684 DnaJ central domain Arch_0978 PF01556 DnaJ C terminal domain Arch_0979 PF01628 HrcA protein C terminal domain Arch_0979 PF08220 DeoR-like helix-turn-helix domain Arch_0980 PF01850 PIN domain Arch_0984 PF11296 Arch_0984 Arch_0986 PF04055 Radical SAM superfamily Arch_0987 PF02390 Putative methyltransferase Arch_0988 PF00009 Elongation factor Tu GTP binding domain Arch_0988 PF00679 Elongation factor G C-terminus Arch_0988 PF06421 GTP-binding protein LepA C-terminus Arch_0990 PF03703 Arch_0990 Arch_0991 PF02452 PemK-like protein Arch_0992 PF01649 Ribosomal protein S20 Arch_0993 PF02233 NAD(P) transhydrogenase beta subunit Arch_0994 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Arch_0994 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Arch_0994 PF12769 Domain of unknown function (DUF3814) Arch_0995 PF06144 DNA polymerase III, delta subunit Arch_0996 PF03772 Arch_0996 Arch_0996 PF13567 Arch_0996 Arch_0997 PF10531 SLBB domain Arch_0997 PF12836 Helix-hairpin-helix motif Arch_0998 PF05872 Arch_0998 Arch_0999 PF01263 Aldose 1-epimerase Arch_1000 PF08264 Anticodon-binding domain of tRNA Arch_1000 PF09334 tRNA synthetases class I (M) Arch_1000 PF13603 Leucyl-tRNA synthetase, Domain 2 Arch_1001 PF01230 HIT domain Arch_1002 PF07884 Vitamin K epoxide reductase family Arch_1003 PF03332 Eukaryotic phosphomannomutase Arch_1004 PF01594 Arch_1004 Arch_1005 PF01048 Phosphorylase superfamily Arch_1006 PF00005 ABC transporter Arch_1007 PF00528 Binding-protein-dependent transport system inner membrane component Arch_1008 PF03180 NLPA lipoprotein Arch_1010 PF00474 Sodium:solute symporter family Arch_1011 PF06808 Arch_1011 Arch_1012 PF04290 Arch_1012 Arch_1013 PF03480 Bacterial extracellular solute-binding protein, family 7 Arch_1014 PF01470 Pyroglutamyl peptidase Arch_1015 PF00082 Subtilase family Arch_1015 PF02225 PA domain Arch_1015 PF06280 Fn3-like domain (DUF1034) Arch_1016 PF06197 Arch_1016 Arch_1017 PF12697 Alpha/beta hydrolase family Arch_1018 PF00152 tRNA synthetases class II (D, K and N) Arch_1018 PF01336 OB-fold nucleic acid binding domain Arch_1018 PF09924 Uncharacterized conserved protein (DUF2156) Arch_1018 PF16995 Arch_1018 Arch_1019 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Arch_1019 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Arch_1020 PF00156 Phosphoribosyl transferase domain Arch_1021 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Arch_1022 PF01180 Dihydroorotate dehydrogenase Arch_1023 PF00175 Oxidoreductase NAD-binding domain Arch_1023 PF00970 Oxidoreductase FAD-binding domain Arch_1023 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Arch_1024 PF02142 MGS-like domain Arch_1024 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Arch_1024 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Arch_1025 PF01979 Amidohydrolase family Arch_1028 PF03553 Arch_1028 Arch_1029 PF01197 Ribosomal protein L31 Arch_1030 PF07859 alpha/beta hydrolase fold Arch_1031 PF07690 Major Facilitator Superfamily Arch_1032 PF00440 Bacterial regulatory proteins, tetR family Arch_1033 PF02537 Arch_1033 Arch_1034 PF02537 Arch_1034 Arch_1035 PF09335 Arch_1035 Arch_1036 PF00916 Arch_1036 Arch_1036 PF01740 STAS domain Arch_1038 PF12733 Arch_1038 Arch_1041 PF01548 Arch_1041 Arch_1041 PF02371 Arch_1041 Arch_1049 PF07751 Arch_1049 Arch_1051 PF01420 Type I restriction modification DNA specificity domain Arch_1052 PF01420 Type I restriction modification DNA specificity domain Arch_1053 PF02384 N-6 DNA Methylase Arch_1053 PF12161 HsdM N-terminal domain Arch_1054 PF00271 Helicase conserved C-terminal domain Arch_1054 PF04851 Type III restriction enzyme, res subunit Arch_1054 PF08463 Arch_1054 Arch_1054 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Arch_1057 PF08843 Nucleotidyl transferase of unknown function (DUF1814) Arch_1059 PF13489 Methyltransferase domain Arch_1061 PF07510 Arch_1061 Arch_1062 PF01289 Thiol-activated cytolysin Arch_1062 PF17440 Arch_1062 Arch_1063 PF00300 Histidine phosphatase superfamily (branch 1) Arch_1064 PF02410 Oligomerisation domain Arch_1066 PF01467 Cytidylyltransferase Arch_1067 PF00085 Thioredoxin Arch_1069 PF01018 GTP1/OBG Arch_1069 PF01926 50S ribosome-binding GTPase Arch_1069 PF09269 Domain of unknown function (DUF1967) Arch_1070 PF01016 Ribosomal L27 protein Arch_1071 PF00829 Ribosomal prokaryotic L21 protein Arch_1072 PF10150 Ribonuclease E/G family Arch_1073 PF01654 Arch_1073 Arch_1074 PF02322 Arch_1074 Arch_1075 PF00005 ABC transporter Arch_1075 PF00664 ABC transporter transmembrane region Arch_1076 PF00005 ABC transporter Arch_1076 PF00664 ABC transporter transmembrane region Arch_1077 PF07730 Histidine kinase Arch_1077 PF13185 GAF domain Arch_1078 PF00072 Response regulator receiver domain Arch_1078 PF00196 Bacterial regulatory proteins, luxR family Arch_1079 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Arch_1079 PF06827 Zinc finger found in FPG and IleRS Arch_1079 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Arch_1080 PF00035 Double-stranded RNA binding motif Arch_1080 PF14622 Ribonuclease-III-like Arch_1081 PF02620 Arch_1081 Arch_1083 PF01467 Cytidylyltransferase Arch_1084 PF03602 Conserved hypothetical protein 95 Arch_1085 PF00270 DEAD/DEAH box helicase Arch_1085 PF00271 Helicase conserved C-terminal domain Arch_1085 PF17191 Arch_1085 Arch_1086 PF00830 Ribosomal L28 family Arch_1087 PF00005 ABC transporter Arch_1088 PF01032 FecCD transport family Arch_1089 PF01032 FecCD transport family Arch_1090 PF01497 Periplasmic binding protein Arch_1091 PF00586 AIR synthase related protein, N-terminal domain Arch_1091 PF02769 AIR synthase related protein, C-terminal domain Arch_1092 PF01820 D-ala D-ala ligase N-terminus Arch_1092 PF07478 D-ala D-ala ligase C-terminus Arch_1093 PF01553 Acyltransferase Arch_1094 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Arch_1095 PF01614 Bacterial transcriptional regulator Arch_1095 PF09339 IclR helix-turn-helix domain Arch_1096 PF00534 Glycosyl transferases group 1 Arch_1097 PF01432 Peptidase family M3 Arch_1100 PF00749 tRNA synthetases class I (E and Q), catalytic domain Arch_1101 PF01557 Fumarylacetoacetate (FAA) hydrolase family Arch_1101 PF10370 Domain of unknown function (DUF2437) Arch_1103 PF01910 Domain of unknown function DUF77 Arch_1105 PF05738 Cna protein B-type domain Arch_1106 PF00578 AhpC/TSA family Arch_1108 PF16262 Arch_1108 Arch_1109 PF01725 Ham1 family Arch_1110 PF01138 3' exoribonuclease family, domain 1 Arch_1110 PF03725 3' exoribonuclease family, domain 2 Arch_1111 PF02661 Fic/DOC family Arch_1112 PF12706 Beta-lactamase superfamily domain Arch_1113 PF01177 Asp/Glu/Hydantoin racemase Arch_1114 PF09438 Arch_1114 Arch_1115 PF02617 ATP-dependent Clp protease adaptor protein ClpS Arch_1116 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Arch_1117 PF04851 Type III restriction enzyme, res subunit Arch_1118 PF11238 Arch_1118 Arch_1119 PF00216 Bacterial DNA-binding protein Arch_1120 PF02080 TrkA-C domain Arch_1120 PF06826 Arch_1120 Arch_1121 PF00756 Putative esterase Arch_1122 PF00381 PTS HPr component phosphorylation site Arch_1122 PF03610 PTS system fructose IIA component Arch_1123 PF02733 Dak1 domain Arch_1123 PF02734 DAK2 domain Arch_1124 PF01594 Arch_1124 Arch_1125 PF02540 NAD synthase Arch_1127 PF00005 ABC transporter Arch_1128 PF13531 Bacterial extracellular solute-binding protein Arch_1129 PF07690 Major Facilitator Superfamily Arch_1130 PF00072 Response regulator receiver domain Arch_1130 PF00486 Transcriptional regulatory protein, C terminal Arch_1131 PF00512 His Kinase A (phospho-acceptor) domain Arch_1131 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Arch_1132 PF00762 Ferrochelatase Arch_1134 PF02592 Arch_1134 Arch_1135 PF00881 Nitroreductase family Arch_1136 PF02016 LD-carboxypeptidase Arch_1137 PF12724 Flavodoxin domain Arch_1140 PF01174 SNO glutamine amidotransferase family Arch_1141 PF01680 SOR/SNZ family Arch_1142 PF01966 HD domain Arch_1143 PF00950 Arch_1143 Arch_1144 PF00005 ABC transporter Arch_1145 PF01297 Periplasmic solute binding protein family Arch_1146 PF09972 Arch_1146 Arch_1147 PF14067 Arch_1147 Arch_1148 PF03372 Endonuclease/Exonuclease/phosphatase family Arch_1149 PF00392 Bacterial regulatory proteins, gntR family Arch_1150 PF00005 ABC transporter Arch_1152 PF00005 ABC transporter Arch_1153 PF00528 Binding-protein-dependent transport system inner membrane component Arch_1154 PF00497 Bacterial extracellular solute-binding proteins, family 3 Arch_1155 PF02579 Dinitrogenase iron-molybdenum cofactor Arch_1156 PF05525 Arch_1156 Arch_1157 PF05525 Arch_1157 Arch_1158 PF05525 Arch_1158 Arch_1159 PF03352 Methyladenine glycosylase Arch_1160 PF02308 Arch_1160 Arch_1162 PF04205 FMN-binding domain Arch_1163 PF02424 ApbE family Arch_1164 PF00288 GHMP kinases N terminal domain Arch_1164 PF08544 GHMP kinases C terminal Arch_1164 PF10509 Galactokinase galactose-binding signature Arch_1167 PF16363 Arch_1167 Arch_1168 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Arch_1168 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Arch_1171 PF07992 Pyridine nucleotide-disulphide oxidoreductase Arch_1172 PF00440 Bacterial regulatory proteins, tetR family Arch_1174 PF00764 Arginosuccinate synthase Arch_1175 PF00206 Lyase Arch_1175 PF14698 Argininosuccinate lyase C-terminal Arch_1176 PF00583 Acetyltransferase (GNAT) family Arch_1177 PF00206 Lyase Arch_1177 PF10397 Adenylosuccinate lyase C-terminus Arch_1178 PF00709 Adenylosuccinate synthetase Arch_1179 PF00478 IMP dehydrogenase / GMP reductase domain Arch_1179 PF00571 CBS domain Arch_1180 PF00440 Bacterial regulatory proteins, tetR family Arch_1181 PF00005 ABC transporter Arch_1182 PF00005 ABC transporter Arch_1182 PF00664 ABC transporter transmembrane region Arch_1183 PF00005 ABC transporter Arch_1184 PF02361 Cobalt transport protein Arch_1185 PF09605 Arch_1185 Arch_1187 PF07739 TipAS antibiotic-recognition domain Arch_1187 PF13411 MerR HTH family regulatory protein Arch_1189 PF01381 Helix-turn-helix Arch_1193 PF03577 Arch_1193 Arch_1194 PF15738 Arch_1194 Arch_1195 PF01527 Transposase Arch_1196 PF00665 Integrase core domain Arch_1196 PF13276 Arch_1196 Arch_1197 PF04221 RelB antitoxin Arch_1200 PF14253 Arch_1200 Arch_1202 PF14253 Arch_1202 Arch_1205 PF04055 Radical SAM superfamily Arch_1205 PF13353 4Fe-4S single cluster domain Arch_1206 PF07690 Major Facilitator Superfamily Arch_1208 PF00665 Integrase core domain Arch_1208 PF13276 Arch_1208 Arch_1209 PF10049 Arch_1209 Arch_1214 PF00239 Resolvase, N terminal domain Arch_1214 PF07508 Recombinase Arch_1216 PF13242 HAD-hyrolase-like Arch_1216 PF13344 Haloacid dehalogenase-like hydrolase Arch_1217 PF01668 SmpB protein Arch_1218 PF01551 Peptidase family M23 Arch_1220 PF00005 ABC transporter Arch_1221 PF00472 RF-1 domain Arch_1221 PF03462 PCRF domain Arch_1226 PF00482 Type II secretion system (T2SS), protein F Arch_1227 PF00482 Type II secretion system (T2SS), protein F Arch_1228 PF00437 Type II/IV secretion system protein Arch_1229 PF01636 Phosphotransferase enzyme family Arch_1230 PF00580 UvrD/REP helicase N-terminal domain Arch_1230 PF12705 PD-(D/E)XK nuclease superfamily Arch_1230 PF13361 UvrD-like helicase C-terminal domain Arch_1231 PF12705 PD-(D/E)XK nuclease superfamily Arch_1231 PF13245 Part of AAA domain Arch_1232 PF05661 Arch_1232 Arch_1233 PF11305 Arch_1233 Arch_1234 PF00270 DEAD/DEAH box helicase Arch_1234 PF00271 Helicase conserved C-terminal domain Arch_1235 PF01914 Arch_1235 Arch_1236 PF02811 PHP domain Arch_1237 PF00557 Metallopeptidase family M24 Arch_1237 PF05195 Aminopeptidase P, N-terminal domain Arch_1238 PF00571 CBS domain Arch_1238 PF03448 MgtE intracellular N domain Arch_1239 PF06210 Arch_1239 Arch_1240 PF01883 Domain of unknown function DUF59 Arch_1240 PF10609 ParA/MinD ATPase like Arch_1241 PF01596 O-methyltransferase Arch_1242 PF00902 Sec-independent protein translocase protein (TatC) Arch_1243 PF02416 mttA/Hcf106 family Arch_1244 PF13531 Bacterial extracellular solute-binding protein Arch_1245 PF00005 ABC transporter Arch_1245 PF00528 Binding-protein-dependent transport system inner membrane component Arch_1246 PF01967 MoaC family Arch_1247 PF00994 Probable molybdopterin binding domain Arch_1247 PF03453 MoeA N-terminal region (domain I and II) Arch_1248 PF00899 ThiF family Arch_1249 PF00994 Probable molybdopterin binding domain Arch_1249 PF02391 MoaE protein Arch_1250 PF02597 ThiS family Arch_1251 PF04055 Radical SAM superfamily Arch_1251 PF06463 Molybdenum Cofactor Synthesis C Arch_1252 PF12838 4Fe-4S dicluster domain Arch_1253 PF02613 Nitrate reductase delta subunit Arch_1254 PF04976 Arch_1254 Arch_1255 PF12800 4Fe-4S binding domain Arch_1255 PF13247 4Fe-4S dicluster domain Arch_1256 PF00384 Molybdopterin oxidoreductase Arch_1256 PF01568 Molydopterin dinucleotide binding domain Arch_1256 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Arch_1256 PF10518 TAT (twin-arginine translocation) pathway signal sequence Arch_1260 PF11314 Arch_1260 Arch_1261 PF03641 Possible lysine decarboxylase Arch_1262 PF01048 Phosphorylase superfamily Arch_1263 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Arch_1263 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Arch_1263 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Arch_1263 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Arch_1264 PF01791 DeoC/LacD family aldolase Arch_1266 PF00591 Glycosyl transferase family, a/b domain Arch_1266 PF02885 Glycosyl transferase family, helical bundle domain Arch_1266 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Arch_1267 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Arch_1268 PF02653 Arch_1268 Arch_1269 PF02653 Arch_1269 Arch_1270 PF00005 ABC transporter Arch_1271 PF02608 Basic membrane protein Arch_1272 PF00483 Nucleotidyl transferase Arch_1272 PF01050 Mannose-6-phosphate isomerase Arch_1273 PF03631 Arch_1273 Arch_1274 PF03372 Endonuclease/Exonuclease/phosphatase family Arch_1275 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Arch_1275 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Arch_1276 PF00464 Serine hydroxymethyltransferase Arch_1277 PF00551 Formyl transferase Arch_1278 PF03070 TENA/THI-4/PQQC family Arch_1278 PF08543 Phosphomethylpyrimidine kinase Arch_1279 PF02581 Thiamine monophosphate synthase/TENI Arch_1280 PF02110 Hydroxyethylthiazole kinase family Arch_1281 PF00132 Bacterial transferase hexapeptide (six repeats) Arch_1282 PF00072 Response regulator receiver domain Arch_1282 PF00196 Bacterial regulatory proteins, luxR family Arch_1283 PF04024 Arch_1283 Arch_1284 PF04024 Arch_1284 Arch_1287 PF00056 lactate/malate dehydrogenase, NAD binding domain Arch_1287 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Arch_1289 PF00342 Phosphoglucose isomerase Arch_1290 PF00128 Alpha amylase, catalytic domain Arch_1291 PF00365 Phosphofructokinase Arch_1292 PF00703 Glycosyl hydrolases family 2 Arch_1292 PF00754 F5/8 type C domain Arch_1292 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Arch_1292 PF02837 Glycosyl hydrolases family 2, sugar binding domain Arch_1292 PF07532 Arch_1292 Arch_1292 PF16355 Arch_1292 Arch_1293 PF11222 Arch_1293 Arch_1295 PF00549 CoA-ligase Arch_1295 PF02629 CoA binding domain Arch_1296 PF00549 CoA-ligase Arch_1296 PF08442 ATP-grasp domain Arch_1297 PF01757 Arch_1297 Arch_1298 PF00580 UvrD/REP helicase N-terminal domain Arch_1298 PF13361 UvrD-like helicase C-terminal domain Arch_1299 PF13088 BNR repeat-like domain Arch_1300 PF03591 Arch_1300 Arch_1301 PF01527 Transposase Arch_1305 PF01527 Transposase Arch_1306 PF13630 Arch_1306 Arch_1307 PF00117 Glutamine amidotransferase class-I Arch_1307 PF00958 GMP synthase C terminal domain Arch_1307 PF02540 NAD synthase Arch_1312 PF06114 Domain of unknown function (DUF955) Arch_1313 PF01381 Helix-turn-helix Arch_1314 PF00849 RNA pseudouridylate synthase Arch_1315 PF01515 Phosphate acetyl/butaryl transferase Arch_1316 PF00871 Acetokinase family Arch_1317 PF00583 Acetyltransferase (GNAT) family Arch_1319 PF00206 Lyase Arch_1319 PF10415 Fumarase C C-terminus Arch_1320 PF00478 IMP dehydrogenase / GMP reductase domain Arch_1321 PF00929 Exonuclease Arch_1322 PF07992 Pyridine nucleotide-disulphide oxidoreductase Arch_1322 PF13192 Thioredoxin domain Arch_1323 PF00578 AhpC/TSA family Arch_1323 PF10417 C-terminal domain of 1-Cys peroxiredoxin Arch_1325 PF00478 IMP dehydrogenase / GMP reductase domain Arch_1326 PF02467 Arch_1326 Arch_1327 PF00166 Chaperonin 10 Kd subunit Arch_1329 PF00814 Glycoprotease family Arch_1330 PF13085 2Fe-2S iron-sulfur cluster binding domain Arch_1330 PF13183 4Fe-4S dicluster domain Arch_1331 PF00890 FAD binding domain Arch_1331 PF02910 Fumarate reductase flavoprotein C-term Arch_1333 PF00583 Acetyltransferase (GNAT) family Arch_1334 PF00814 Glycoprotease family Arch_1336 PF02367 Uncharacterised P-loop hydrolase UPF0079 Arch_1337 PF00842 Alanine racemase, C-terminal domain Arch_1337 PF01168 Alanine racemase, N-terminal domain Arch_1338 PF01256 Carbohydrate kinase Arch_1339 PF01380 SIS domain Arch_1339 PF13522 Glutamine amidotransferase domain Arch_1340 PF00485 Phosphoribulokinase / Uridine kinase family Arch_1341 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Arch_1341 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Arch_1341 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Arch_1341 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Arch_1342 PF00380 Ribosomal protein S9/S16 Arch_1343 PF00572 Ribosomal protein L13 Arch_1344 PF01416 tRNA pseudouridine synthase Arch_1345 PF00480 ROK family Arch_1347 PF01196 Ribosomal protein L17 Arch_1348 PF01000 RNA polymerase Rpb3/RpoA insert domain Arch_1348 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Arch_1348 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Arch_1349 PF00411 Ribosomal protein S11 Arch_1350 PF00416 Ribosomal protein S13/S18 Arch_1351 PF00444 Ribosomal protein L36 Arch_1352 PF01176 Translation initiation factor 1A / IF-1 Arch_1353 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase Arch_1354 PF01494 FAD binding domain Arch_1355 PF00766 Electron transfer flavoprotein FAD-binding domain Arch_1355 PF01012 Electron transfer flavoprotein domain Arch_1356 PF01012 Electron transfer flavoprotein domain Arch_1357 PF00440 Bacterial regulatory proteins, tetR family Arch_1358 PF00753 Metallo-beta-lactamase superfamily Arch_1359 PF00083 Sugar (and other) transporter Arch_1360 PF01575 MaoC like domain Arch_1361 PF00501 AMP-binding enzyme Arch_1361 PF13193 AMP-binding enzyme C-terminal domain Arch_1362 PF02515 CoA-transferase family III Arch_1363 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Arch_1363 PF02770 Acyl-CoA dehydrogenase, middle domain Arch_1363 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Arch_1364 PF07859 alpha/beta hydrolase fold Arch_1365 PF07690 Major Facilitator Superfamily Arch_1366 PF00557 Metallopeptidase family M24 Arch_1367 PF00406 Adenylate kinase Arch_1368 PF00344 SecY translocase Arch_1369 PF00828 Ribosomal protein L18e/L15 Arch_1370 PF00327 Ribosomal protein L30p/L7e Arch_1371 PF00333 Ribosomal protein S5, N-terminal domain Arch_1371 PF03719 Ribosomal protein S5, C-terminal domain Arch_1372 PF00861 Ribosomal L18p/L5e family Arch_1373 PF00347 Ribosomal protein L6 Arch_1374 PF00410 Ribosomal protein S8 Arch_1375 PF00253 Ribosomal protein S14p/S29e Arch_1376 PF00281 Ribosomal protein L5 Arch_1376 PF00673 ribosomal L5P family C-terminus Arch_1377 PF00467 KOW motif Arch_1377 PF17136 Arch_1377 Arch_1378 PF00238 Ribosomal protein L14p/L23e Arch_1379 PF00366 Ribosomal protein S17 Arch_1380 PF00831 Ribosomal L29 protein Arch_1381 PF00252 Ribosomal protein L16p/L10e Arch_1382 PF00189 Ribosomal protein S3, C-terminal domain Arch_1382 PF07650 KH domain Arch_1383 PF00237 Ribosomal protein L22p/L17e Arch_1384 PF00203 Ribosomal protein S19 Arch_1385 PF00181 Ribosomal Proteins L2, RNA binding domain Arch_1385 PF03947 Ribosomal Proteins L2, C-terminal domain Arch_1386 PF00276 Ribosomal protein L23 Arch_1387 PF00573 Ribosomal protein L4/L1 family Arch_1388 PF00297 Ribosomal protein L3 Arch_1389 PF00338 Ribosomal protein S10p/S20e Arch_1390 PF00009 Elongation factor Tu GTP binding domain Arch_1390 PF03143 Elongation factor Tu C-terminal domain Arch_1390 PF03144 Elongation factor Tu domain 2 Arch_1391 PF00009 Elongation factor Tu GTP binding domain Arch_1391 PF00679 Elongation factor G C-terminus Arch_1391 PF03144 Elongation factor Tu domain 2 Arch_1391 PF03764 Elongation factor G, domain IV Arch_1391 PF14492 Elongation Factor G, domain II Arch_1392 PF00177 Ribosomal protein S7p/S5e Arch_1393 PF00164 Ribosomal protein S12/S23 Arch_1395 PF00623 RNA polymerase Rpb1, domain 2 Arch_1395 PF04983 RNA polymerase Rpb1, domain 3 Arch_1395 PF04997 RNA polymerase Rpb1, domain 1 Arch_1395 PF04998 RNA polymerase Rpb1, domain 5 Arch_1395 PF05000 RNA polymerase Rpb1, domain 4 Arch_1396 PF00562 RNA polymerase Rpb2, domain 6 Arch_1396 PF04560 RNA polymerase Rpb2, domain 7 Arch_1396 PF04561 RNA polymerase Rpb2, domain 2 Arch_1396 PF04563 RNA polymerase beta subunit Arch_1396 PF04565 RNA polymerase Rpb2, domain 3 Arch_1396 PF10385 RNA polymerase beta subunit external 1 domain Arch_1397 PF00542 Ribosomal protein L7/L12 C-terminal domain Arch_1397 PF16320 Arch_1397 Arch_1398 PF00466 Ribosomal protein L10 Arch_1399 PF00485 Phosphoribulokinase / Uridine kinase family Arch_1400 PF00687 Ribosomal protein L1p/L10e family Arch_1401 PF00298 Ribosomal protein L11, RNA binding domain Arch_1401 PF03946 Ribosomal protein L11, N-terminal domain Arch_1402 PF02357 Transcription termination factor nusG Arch_1403 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Arch_1404 PF00155 Aminotransferase class I and II Arch_1406 PF01548 Arch_1406 Arch_1406 PF02371 Arch_1406 Arch_1407 PF01636 Phosphotransferase enzyme family Arch_1408 PF00962 Adenosine/AMP deaminase Arch_1409 PF12697 Alpha/beta hydrolase family Arch_1411 PF01565 FAD binding domain Arch_1411 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Arch_1412 PF00471 Ribosomal protein L33 Arch_1413 PF04461 Protein of unknown function (DUF520) Arch_1414 PF07992 Pyridine nucleotide-disulphide oxidoreductase Arch_1415 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Arch_1415 PF16321 Arch_1415 Arch_1416 PF00156 Phosphoribosyl transferase domain Arch_1417 PF10646 Arch_1417 Arch_1417 PF10647 Arch_1417 Arch_1418 PF00512 His Kinase A (phospho-acceptor) domain Arch_1418 PF00672 HAMP domain Arch_1418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Arch_1419 PF00072 Response regulator receiver domain Arch_1419 PF00486 Transcriptional regulatory protein, C terminal Arch_1420 PF12005 Arch_1420 Arch_1423 PF13641 Glycosyltransferase like family 2 Arch_1424 PF02467 Arch_1424 Arch_1426 PF03816 Cell envelope-related transcriptional attenuator domain Arch_1427 PF03816 Cell envelope-related transcriptional attenuator domain Arch_1428 PF00512 His Kinase A (phospho-acceptor) domain Arch_1428 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Arch_1429 PF00072 Response regulator receiver domain Arch_1429 PF00486 Transcriptional regulatory protein, C terminal Arch_1430 PF00211 Adenylate and Guanylate cyclase catalytic domain Arch_1430 PF16701 Arch_1430 Arch_1431 PF05960 Bacterial protein of unknown function (DUF885) Arch_1432 PF02545 Maf-like protein Arch_1433 PF00285 Citrate synthase Arch_1434 PF00037 4Fe-4S binding domain Arch_1435 PF04294 Arch_1435 Arch_1435 PF12229 Putative peptidoglycan binding domain Arch_1437 PF00009 Elongation factor Tu GTP binding domain Arch_1437 PF00679 Elongation factor G C-terminus Arch_1437 PF03144 Elongation factor Tu domain 2 Arch_1438 PF10756 Arch_1438 Arch_1439 PF00005 ABC transporter Arch_1439 PF00664 ABC transporter transmembrane region Arch_1440 PF00005 ABC transporter Arch_1440 PF00664 ABC transporter transmembrane region Arch_1441 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Arch_1442 PF00005 ABC transporter Arch_1442 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Arch_1443 PF00528 Binding-protein-dependent transport system inner membrane component Arch_1443 PF12911 Arch_1443 Arch_1444 PF00528 Binding-protein-dependent transport system inner membrane component Arch_1446 PF04055 Radical SAM superfamily Arch_1446 PF16881 Arch_1446 Arch_1447 PF00501 AMP-binding enzyme Arch_1447 PF13193 AMP-binding enzyme C-terminal domain Arch_1448 PF02127 Aminopeptidase I zinc metalloprotease (M18) Arch_1450 PF00102 Protein-tyrosine phosphatase Arch_1451 PF03971 Monomeric isocitrate dehydrogenase Arch_1452 PF14041 Arch_1452 Arch_1453 PF00056 lactate/malate dehydrogenase, NAD binding domain Arch_1453 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Arch_1455 PF00561 alpha/beta hydrolase fold Arch_1456 PF09685 Arch_1456 Arch_1457 PF01546 Peptidase family M20/M25/M40 Arch_1457 PF07687 Peptidase dimerisation domain Arch_1458 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Arch_1458 PF00367 phosphotransferase system, EIIB Arch_1458 PF02378 Phosphotransferase system, EIIC Arch_1459 PF00874 PRD domain Arch_1459 PF03123 CAT RNA binding domain Arch_1460 PF00391 PEP-utilising enzyme, mobile domain Arch_1460 PF02896 PEP-utilising enzyme, TIM barrel domain Arch_1460 PF05524 PEP-utilising enzyme, N-terminal Arch_1461 PF00381 PTS HPr component phosphorylation site Arch_1462 PF03358 NADPH-dependent FMN reductase Arch_1463 PF00581 Rhodanese-like domain Arch_1464 PF00754 F5/8 type C domain Arch_1466 PF00210 Ferritin-like domain Arch_1467 PF14133 Arch_1467 Arch_1468 PF02517 CAAX protease self-immunity Arch_1469 PF00578 AhpC/TSA family Arch_1470 PF01578 Arch_1470 Arch_1471 PF05140 Arch_1471 Arch_1472 PF02683 Arch_1472 Arch_1473 PF07719 Tetratricopeptide repeat Arch_1474 PF02335 Cytochrome c552 Arch_1475 PF03264 NapC/NirT cytochrome c family, N-terminal region Arch_1476 PF02502 Ribose/Galactose Isomerase Arch_1477 PF00596 Class II Aldolase and Adducin N-terminal domain Arch_1478 PF00356 Bacterial regulatory proteins, lacI family Arch_1480 PF03167 Uracil DNA glycosylase superfamily Arch_1481 PF13302 Acetyltransferase (GNAT) domain Arch_1482 PF11193 Arch_1482 Arch_1483 PF03551 Transcriptional regulator PadR-like family Arch_1484 PF16951 Arch_1484 Arch_1485 PF00209 Sodium:neurotransmitter symporter family Arch_1486 PF00005 ABC transporter Arch_1487 PF00884 Sulfatase Arch_1488 PF00356 Bacterial regulatory proteins, lacI family Arch_1488 PF13377 Periplasmic binding protein-like domain Arch_1489 PF00083 Sugar (and other) transporter Arch_1490 PF04055 Radical SAM superfamily Arch_1490 PF13186 Iron-sulfur cluster-binding domain Arch_1491 PF01925 Arch_1491 Arch_1494 PF01926 50S ribosome-binding GTPase Arch_1494 PF06071 Protein of unknown function (DUF933) Arch_1495 PF02646 Arch_1495 Arch_1497 PF01381 Helix-turn-helix Arch_1499 PF02401 LytB protein Arch_1500 PF02601 Arch_1500 Arch_1500 PF13742 Arch_1500 Arch_1501 PF02609 Exonuclease VII small subunit Arch_1502 PF00294 pfkB family carbohydrate kinase Arch_1503 PF01255 Putative undecaprenyl diphosphate synthase Arch_1504 PF03006 Arch_1504 Arch_1505 PF01272 Transcription elongation factor, GreA/GreB, C-term Arch_1505 PF03449 Transcription elongation factor, N-terminal Arch_1506 PF01625 Peptide methionine sulfoxide reductase Arch_1507 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Arch_1508 PF12811 Arch_1508 Arch_1509 PF00005 ABC transporter Arch_1510 PF12679 Arch_1510 Arch_1513 PF02541 Ppx/GppA phosphatase family Arch_1514 PF04417 Arch_1514 Arch_1515 PF04977 Septum formation initiator Arch_1516 PF00113 Enolase, C-terminal TIM barrel domain Arch_1516 PF03952 Enolase, N-terminal domain Arch_1517 PF00270 DEAD/DEAH box helicase Arch_1517 PF00271 Helicase conserved C-terminal domain Arch_1517 PF02559 CarD-like/TRCF domain Arch_1517 PF03461 TRCF domain Arch_1518 PF01195 Peptidyl-tRNA hydrolase Arch_1519 PF01386 Ribosomal L25p family Arch_1519 PF14693 Ribosomal protein TL5, C-terminal domain Arch_1520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Arch_1520 PF14572 Phosphoribosyl synthetase-associated domain Arch_1521 PF12804 MobA-like NTP transferase domain Arch_1522 PF00440 Bacterial regulatory proteins, tetR family Arch_1523 PF00005 ABC transporter Arch_1524 PF12698 ABC-2 family transporter protein Arch_1527 PF00005 ABC transporter Arch_1529 PF13630 Arch_1529 Arch_1534 PF05175 Methyltransferase small domain Arch_1546 PF05521 Phage head-tail joining protein Arch_1547 PF05135 Phage gp6-like head-tail connector protein Arch_1548 PF05065 Phage capsid family Arch_1549 PF00574 Clp protease Arch_1550 PF04860 Phage portal protein Arch_1551 PF01022 Bacterial regulatory protein, arsR family Arch_1552 PF03773 Arch_1552 Arch_1553 PF01451 Low molecular weight phosphotyrosine protein phosphatase Arch_1554 PF13192 Thioredoxin domain Arch_1555 PF03354 Arch_1555 Arch_1557 PF01022 Bacterial regulatory protein, arsR family Arch_1558 PF03596 Arch_1558 Arch_1565 PF14192 Arch_1565 Arch_1569 PF01527 Transposase Arch_1570 PF00665 Integrase core domain Arch_1570 PF13276 Arch_1570 Arch_1573 PF00005 ABC transporter Arch_1573 PF00664 ABC transporter transmembrane region Arch_1574 PF00005 ABC transporter Arch_1574 PF00664 ABC transporter transmembrane region Arch_1575 PF00005 ABC transporter Arch_1575 PF02361 Cobalt transport protein Arch_1576 PF09819 Arch_1576 Arch_1577 PF00239 Resolvase, N terminal domain Arch_1577 PF07508 Recombinase Arch_1578 PF00239 Resolvase, N terminal domain Arch_1578 PF07508 Recombinase Arch_1578 PF13408 Recombinase zinc beta ribbon domain Arch_1580 PF02384 N-6 DNA Methylase Arch_1580 PF12161 HsdM N-terminal domain Arch_1581 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Arch_1585 PF12802 MarR family Arch_1586 PF00005 ABC transporter Arch_1586 PF12848 ABC transporter Arch_1587 PF00288 GHMP kinases N terminal domain Arch_1588 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Arch_1589 PF00367 phosphotransferase system, EIIB Arch_1589 PF02378 Phosphotransferase system, EIIC Arch_1590 PF00874 PRD domain Arch_1590 PF03123 CAT RNA binding domain Arch_1591 PF00398 Ribosomal RNA adenine dimethylase Arch_1592 PF03990 Arch_1592 Arch_1592 PF07501 G5 domain Arch_1593 PF01026 TatD related DNase Arch_1594 PF09334 tRNA synthetases class I (M) Arch_1595 PF00857 Isochorismatase family Arch_1596 PF08818 Domain of unknown function (DU1801) Arch_1597 PF03176 MMPL family Arch_1598 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Arch_1599 PF06262 Possibl zinc metallo-peptidase Arch_1600 PF02635 DsrE/DsrF-like family Arch_1601 PF00005 ABC transporter Arch_1603 PF07730 Histidine kinase Arch_1604 PF00072 Response regulator receiver domain Arch_1604 PF00196 Bacterial regulatory proteins, luxR family Arch_1605 PF05175 Methyltransferase small domain Arch_1606 PF10077 Arch_1606 Arch_1609 PF00994 Probable molybdopterin binding domain Arch_1609 PF03453 MoeA N-terminal region (domain I and II) Arch_1609 PF03454 MoeA C-terminal region (domain IV) Arch_1610 PF01812 5-formyltetrahydrofolate cyclo-ligase family Arch_1611 PF08666 SAF domain Arch_1612 PF01741 Large-conductance mechanosensitive channel, MscL Arch_1615 PF12368 Arch_1615 Arch_1616 PF00582 Universal stress protein family Arch_1617 PF00877 NlpC/P60 family Arch_1618 PF01325 Iron dependent repressor, N-terminal DNA binding domain Arch_1618 PF02742 Iron dependent repressor, metal binding and dimerisation domain Arch_1618 PF04023 FeoA domain Arch_1619 PF00860 Permease family Arch_1620 PF01238 Phosphomannose isomerase type I Arch_1621 PF11228 Arch_1621 Arch_1622 PF00313 'Cold-shock' DNA-binding domain Arch_1623 PF04536 TLP18 Arch_1624 PF04012 Arch_1624 Arch_1626 PF00072 Response regulator receiver domain Arch_1626 PF00486 Transcriptional regulatory protein, C terminal Arch_1627 PF00512 His Kinase A (phospho-acceptor) domain Arch_1627 PF00672 HAMP domain Arch_1627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Arch_1628 PF01553 Acyltransferase Arch_1629 PF00106 short chain dehydrogenase Arch_1631 PF00118 TCP-1/cpn60 chaperonin family Arch_1632 PF13399 LytR cell envelope-related transcriptional attenuator Arch_1633 PF11662 Arch_1633 Arch_1634 PF03167 Uracil DNA glycosylase superfamily Arch_1635 PF08341 Fibronectin-binding protein signal sequence Arch_1636 PF00155 Aminotransferase class I and II Arch_1637 PF00107 Zinc-binding dehydrogenase Arch_1637 PF08240 Alcohol dehydrogenase GroES-like domain Arch_1638 PF02386 Cation transport protein Arch_1639 PF02080 TrkA-C domain Arch_1639 PF02254 TrkA-N domain Arch_1640 PF01235 Arch_1640 Arch_1641 PF13462 Thioredoxin Arch_1642 PF00069 Protein kinase domain Arch_1643 PF00005 ABC transporter Arch_1644 PF13224 Arch_1644 Arch_1645 PF02132 RecR protein Arch_1645 PF13662 Toprim domain Arch_1646 PF12169 DNA polymerase III subunits gamma and tau domain III Arch_1646 PF13177 DNA polymerase III, delta subunit Arch_1647 PF05977 Transmembrane secretion effector Arch_1648 PF00665 Integrase core domain Arch_1648 PF13276 Arch_1648 Arch_1649 PF01527 Transposase Arch_1654 PF13399 LytR cell envelope-related transcriptional attenuator Arch_1655 PF00860 Permease family Arch_1656 PF04266 ASCH domain Arch_1658 PF00588 SpoU rRNA Methylase family Arch_1658 PF08032 RNA 2'-O ribose methyltransferase substrate binding Arch_1659 PF01406 tRNA synthetases class I (C) catalytic domain Arch_1659 PF09190 DALR domain Arch_1660 PF11700 Arch_1660 Arch_1661 PF02542 YgbB family Arch_1662 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Arch_1663 PF02559 CarD-like/TRCF domain Arch_1664 PF00072 Response regulator receiver domain Arch_1664 PF00486 Transcriptional regulatory protein, C terminal Arch_1665 PF00512 His Kinase A (phospho-acceptor) domain Arch_1665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Arch_1666 PF01895 PhoU domain Arch_1667 PF00300 Histidine phosphatase superfamily (branch 1) Arch_1668 PF03733 Arch_1668 Arch_1670 PF00581 Rhodanese-like domain Arch_1670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Arch_1670 PF07992 Pyridine nucleotide-disulphide oxidoreductase Arch_1671 PF02583 Metal-sensitive transcriptional repressor Arch_1672 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Arch_1673 PF00860 Permease family Arch_1673 PF09349 OHCU decarboxylase Arch_1675 PF12840 Helix-turn-helix domain Arch_1678 PF00589 Phage integrase family Arch_1679 PF13614 AAA domain Arch_1684 PF05713 Arch_1684 Arch_1685 PF03432 Arch_1685 Arch_1686 PF12687 Arch_1686 Arch_1690 PF02534 Type IV secretory system Conjugative DNA transfer Arch_1691 PF10097 Arch_1691 Arch_1693 PF01464 Transglycosylase SLT domain Arch_1693 PF05257 CHAP domain Arch_1694 PF12846 AAA-like domain Arch_1695 PF12666 Arch_1695 Arch_1699 PF12728 Helix-turn-helix domain Arch_1701 PF00561 alpha/beta hydrolase fold Arch_1702 PF13177 DNA polymerase III, delta subunit Arch_1703 PF02223 Thymidylate kinase Arch_1704 PF01131 DNA topoisomerase Arch_1704 PF01751 Toprim domain Arch_1704 PF13368 Arch_1704 Arch_1705 PF05175 Methyltransferase small domain Arch_1706 PF04055 Radical SAM superfamily Arch_1706 PF13353 4Fe-4S single cluster domain Arch_1707 PF13597 Anaerobic ribonucleoside-triphosphate reductase Arch_1708 PF00270 DEAD/DEAH box helicase Arch_1708 PF00271 Helicase conserved C-terminal domain Arch_1708 PF09369 Arch_1708 Arch_1711 PF14029 Arch_1711 Arch_1716 PF00437 Type II/IV secretion system protein Arch_1719 PF00561 alpha/beta hydrolase fold Arch_1721 PF00633 Helix-hairpin-helix motif Arch_1721 PF00730 HhH-GPD superfamily base excision DNA repair protein Arch_1721 PF10576 Iron-sulfur binding domain of endonuclease III Arch_1722 PF00027 Cyclic nucleotide-binding domain Arch_1722 PF13545 Crp-like helix-turn-helix domain Arch_1724 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease Arch_1726 PF02467 Arch_1726 Arch_1727 PF00905 Penicillin binding protein transpeptidase domain Arch_1727 PF00912 Transglycosylase Arch_1727 PF03793 PASTA domain Arch_1728 PF12850 Calcineurin-like phosphoesterase superfamily domain Arch_1729 PF00294 pfkB family carbohydrate kinase Arch_1730 PF14486 Domain of unknown function (DUF4432) Arch_1731 PF07690 Major Facilitator Superfamily Arch_1732 PF07751 Arch_1732 Arch_1733 PF04198 Putative sugar-binding domain Arch_1736 PF17210 Arch_1736 Arch_1738 PF00122 E1-E2 ATPase Arch_1738 PF00702 haloacid dehalogenase-like hydrolase Arch_1739 PF08903 Domain of unknown function (DUF1846) Arch_1740 PF01327 Polypeptide deformylase Arch_1742 PF01757 Arch_1742 Arch_1743 PF12686 Arch_1743 Arch_1744 PF14437 Arch_1744 Arch_1745 PF14681 Uracil phosphoribosyltransferase Arch_1746 PF12146 Putative lysophospholipase Arch_1748 PF00535 Glycosyl transferase family 2 Arch_1749 PF00196 Bacterial regulatory proteins, luxR family Arch_1751 PF00781 Diacylglycerol kinase catalytic domain Arch_1752 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Arch_1752 PF02403 Seryl-tRNA synthetase N-terminal domain Arch_1753 PF08282 haloacid dehalogenase-like hydrolase Arch_1755 PF02627 Carboxymuconolactone decarboxylase family Arch_1756 PF09704 CRISPR-associated protein (Cas_Cas5) Arch_1757 PF09344 CT1975-like protein Arch_1759 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) Arch_1760 PF08798 CRISPR associated protein Arch_1761 PF00271 Helicase conserved C-terminal domain Arch_1762 PF01867 CRISPR associated protein Cas1 Arch_1763 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) Arch_1767 PF00392 Bacterial regulatory proteins, gntR family Arch_1767 PF07702 UTRA domain Arch_1768 PF00083 Sugar (and other) transporter Arch_1769 PF07859 alpha/beta hydrolase fold Arch_1769 PF12146 Putative lysophospholipase Arch_1770 PF07690 Major Facilitator Superfamily Arch_1771 PF00939 Sodium:sulfate symporter transmembrane region Arch_1772 PF12905 Endo-alpha-N-acetylgalactosaminidase Arch_1772 PF17451 Arch_1772 Arch_1774 PF08245 Mur ligase middle domain Arch_1774 PF08353 Arch_1774 Arch_1775 PF07685 CobB/CobQ-like glutamine amidotransferase domain Arch_1776 PF05958 tRNA (Uracil-5-)-methyltransferase Arch_1776 PF13649 Methyltransferase domain Arch_1777 PF13419 Haloacid dehalogenase-like hydrolase Arch_1780 PF00665 Integrase core domain Arch_1780 PF13276 Arch_1780 Arch_1781 PF01527 Transposase Arch_1783 PF00270 DEAD/DEAH box helicase Arch_1783 PF00271 Helicase conserved C-terminal domain Arch_1783 PF04408 Helicase associated domain (HA2) Arch_1783 PF08482 Arch_1783 Arch_1786 PF01702 Queuine tRNA-ribosyltransferase Arch_1787 PF14080 Arch_1787 Arch_1789 PF16154 Arch_1789 Arch_1790 PF13462 Thioredoxin Arch_1791 PF01553 Acyltransferase Arch_1792 PF00248 Aldo/keto reductase family Arch_1793 PF01966 HD domain Arch_1794 PF00772 DnaB-like helicase N terminal domain Arch_1794 PF03796 DnaB-like helicase C terminal domain Arch_1795 PF01554 MatE Arch_1796 PF08341 Fibronectin-binding protein signal sequence Arch_1798 PF03644 Glycosyl hydrolase family 85 Arch_1799 PF01281 Ribosomal protein L9, N-terminal domain Arch_1799 PF03948 Ribosomal protein L9, C-terminal domain Arch_1800 PF01084 Ribosomal protein S18 Arch_1801 PF00436 Single-strand binding protein family Arch_1802 PF01250 Ribosomal protein S6 Arch_1803 PF00905 Penicillin binding protein transpeptidase domain Arch_1803 PF00912 Transglycosylase Arch_1804 PF01594 Arch_1804 Arch_1805 PF07690 Major Facilitator Superfamily Arch_1806 PF01743 Poly A polymerase head domain Arch_1806 PF01966 HD domain Arch_1806 PF12627 Probable RNA and SrmB- binding site of polymerase A Arch_1807 PF00293 NUDIX domain Arch_1810 PF07992 Pyridine nucleotide-disulphide oxidoreductase Arch_1812 PF00155 Aminotransferase class I and II Arch_1813 PF02195 ParB-like nuclease domain Arch_1814 PF13614 AAA domain Arch_1815 PF02527 rRNA small subunit methyltransferase G Arch_1816 PF01548 Arch_1816 Arch_1816 PF02371 Arch_1816 Arch_1817 PF01424 R3H domain Arch_1817 PF13083 KH domain Arch_1818 PF02096 60Kd inner membrane protein Arch_1819 PF01809 Arch_1819 Arch_1820 PF00825 Ribonuclease P Arch_1821 PF00468 Ribosomal protein L34 Arch_R0043 PF00005 ABC transporter