locus_tag old_locus_tag gene Name start end strand product note type ID NCBI Arch_0001 Arch_0001 Arch_0001 77 1711 + chromosomal replication initiator protein DnaA COGs: COG0593 ATPase involved in DNA replication initiation~InterProIPR003593:IPR013159:IPR013317:IPR001957:IPR 010921:IPR020591:IPR018312~KEGG: ace:Acel_0001 chromosomal replication initiator protein DnaA~PFAM: Chromosomal replication initiator DnaA%3B Chromosomal replication initiator DnaA domain~SMART: Chromosomal replication initiator DnaA domain%3B AAA ATPase~SPTR: D0WL10 Bacterial DnaA protein helix-turn-helix protein~TIGRFAM: chromosomal replication initiator protein DnaA~PFAM: domain%3B Bacterial dnaA protein~TIGRFAM: chromosomal replication initiator protein DnaA gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0001 Arch_0002 Arch_0002 Arch_0002 2071 3189 + DNA polymerase III%2C beta subunit COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)~InterPro IPR001001~KEGG: jde:Jden_0002 DNA polymerase III%2C beta subunit~PFAM: DNA polymerase III beta chain~PRIAM: DNA-directed DNA polymerase~SMART: DNA polymerase III beta chain~SPTR: D0WL07 DNA polymerase III%2C beta subunit~TIGRFAM: DNA polymerase III%2C beta subunit~PFAM: DNA polymerase III beta subunit%2C C-terminal domain%3B DNA polymerase III beta subunit%2C N-terminal domain%3B DNA polymerase III beta subunit%2C central domain~TIGRFAM: DNA polymerase III%2C beta subunit gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0002 Arch_0003 Arch_0003 Arch_0003 3195 4427 + DNA replication and repair protein RecF COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway)~InterPro IPR003395:IPR001238:IPR018078~KEGG: bcv:Bcav_0004 DNA replication and repair protein RecF~PFAM: SMC domain protein~SPTR: D0WL06 DNA replication and repair protein RecF~TIGRFAM: DNA replication and repair protein RecF~PFAM: RecF/RecN/SMC N terminal domain~TIGRFAM: recF protein gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0003 Arch_0004 Arch_0004 Arch_0004 4424 5008 + protein of unknown function DUF721 COGs: COG5512 Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives~InterPro IPR007922~KEGG: bcv:Bcav_0005 protein of unknown function DUF721~PFAM: protein of unknown function DUF721~SPTR: D0WL05 Protein in RecF-GyrB intergenic region~PFAM: Protein of unknown function (DUF721) gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0004 Arch_0005 Arch_0005 Arch_0005 5191 7239 + DNA gyrase%2C B subunit COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit~InterProIPR003594:IPR001241:IPR013506:IPR006171:IPR 002288:IPR013759:IPR011557:IPR013760:IPR020568:IPR000565:I PR018522~KEGG: jde:Jden_0005 DNA gyrase%2C B subunit~PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein%3B ATP-binding region ATPase domain protein%3B TOPRIM domain protein%3B DNA gyrase subunit B domain protein~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA topoisomerase II%3B ATP-binding region ATPase domain protein~SPTR: D0WL04 DNA gyrase%2C B subunit~TIGRFAM: DNA gyrase%2C B subunit~PFAM: Toprim domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B DNA gyrase B%3B DNA gyrase B subunit%2C carboxyl terminus~TIGRFAM: DNA gyrase%2C B subunit gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0005 Arch_0006 Arch_0006 Arch_0006 7264 9828 + DNA gyrase%2C A subunit COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit~InterProIPR002205:IPR006691:IPR013758:IPR013757:IPR 005743:IPR013760~KEGG: bcv:Bcav_0007 DNA gyrase%2C A subunit~PFAM: DNA gyrase/topoisomerase IV subunit A%3B DNA gyrase repeat beta-propeller~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA gyrase/topoisomerase IV subunit A~SPTR: D0WL03 DNA gyrase%2C A subunit~TIGRFAM: DNA gyrase%2C A subunit~PFAM: DNA gyrase/topoisomerase IV%2C subunit A%3B DNA gyrase C-terminal domain%2C beta-propeller~TIGRFAM: DNA gyrase%2C A subunit gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0006 Arch_0007 Arch_0007 Arch_0007 9864 10298 + conserved hypothetical protein KEGG: kra:Krad_0008 hypothetical protein~SPTR: D0WL02 Putative integral membrane protein~PFAM: Transmembrane domain of unknown function (DUF3566) gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0007 Arch_0008 Arch_0008 Arch_0008 10600 10719 + conserved hypothetical protein KEGG: bcv:Bcav_0009 hypothetical protein~SPTR: C5BUQ1 Putative uncharacterized protein gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0008 Arch_0009 Arch_0009 Arch_0009 11373 13109 - putative transcriptional regulator COGs: COG2865 transcriptional regulator protein~InterPro IPR007421~KEGG: cef:CE2684 hypothetical protein~PFAM: AAA-4 family protein~SPTR: C0VWZ2 Transcriptional regulator~PFAM: Divergent AAA domain gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0009 Arch_0010 Arch_0010 Arch_0010 13363 16311 - coagulation factor 5/8 type domain protein COGs: COG1196 Chromosome segregation ATPase~InterPro IPR000421:IPR008979~KEGG: cai:Caci_5658 ricin B lectin~PFAM: coagulation factor 5/8 type domain protein~SPTR: C7QC69 Ricin B lectin~PFAM: F5/8 type C domain gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0010 Arch_0011 Arch_0011 Arch_0011 16863 18680 + sulfatase COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily~InterPro IPR000917:IPR017849:IPR017850~KEGG: sca:Sca_2153 hypothetical protein~PFAM: sulfatase~SPTR: B9DJW2 Putative uncharacterized protein~PFAM: Sulfatase gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0011 Arch_0012 Arch_0012 Arch_0012 18755 19831 - aminoglycoside phosphotransferase InterPro IPR002575:IPR011009~KEGG: blj:BLD_1766 putative homoserine kinase type II~PFAM: aminoglycoside phosphotransferase~SPTR: A7BJ81 N-acetylhexosamine kinase~PFAM: Phosphotransferase enzyme family gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0012 Arch_0013 Arch_0013 Arch_0013 19831 22062 - conserved hypothetical protein InterPro IPR012711~KEGG: blj:BLD_1765 Lacto-N-biose phosphorylase~PFAM: conserved hypothetical protein~SPTR: B3DQH2 Lacto-N-biose phosphorylase~PFAM: Lacto-N-biose phosphorylase~TIGRFAM: conserved hypothetical protein TIGR02336 gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0013 Arch_0014 Arch_0014 Arch_0014 22246 23418 + ROK family protein COGs: COG1940 Transcriptional regulator/sugar kinase~InterPro IPR001367:IPR000600~KEGG: stp:Strop_4335 ROK family protein~PFAM: ROK family protein%3B iron dependent repressor~SPTR: C0W0N6 Transcriptional regulator~PFAM: ROK family%3B IclR helix-turn-helix domain gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0014 Arch_0015 Arch_0015 Arch_0015 23405 24727 - sodium/glutamate symporter COGs: COG0786 Na+/glutamate symporter~InterPro IPR004445~KEGG: lba:Lebu_0654 sodium/glutamate symporter~PFAM: sodium/glutamate symporter~SPTR: C2CRY4 ESS family glutamate:Na+ symporter~PFAM: Sodium/glutamate symporter~TIGRFAM: sodium--glutamate symport carrier (gltS) gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0015 Arch_0016 Arch_0016 Arch_0016 24767 25372 + hypothetical protein InterPro IPR016181~KEGG: cai:Caci_8064 GCN5-related N-acetyltransferase~SPTR: C0UD33 Acetyltransferase (GNAT) family protein gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0016 Arch_0017 Arch_0017 Arch_0017 25350 26057 - transcriptional regulator%2C TetR family InterPro IPR001647:IPR012287:IPR009057~KEGG: jde:Jden_0686 transcriptional regulator%2C TetR family~PFAM: regulatory protein TetR~SPTR: C0W4B6 Transcriptional regulator~PFAM: Bacterial regulatory proteins%2C tetR family gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0017 Arch_0018 Arch_0018 Arch_0018 26177 29101 + YhgE/Pip C-terminal domain protein COGs: COG1511 membrane protein~InterPro IPR017500:IPR017501~KEGG: jde:Jden_0687 YhgE/Pip C-terminal domain protein~SPTR: C0W4B7 Phage infection protein~TIGRFAM: YhgE/Pip C-terminal domain protein%3B YhgE/Pip N-terminal domain protein~TIGRFAM: X-X-X-Leu-X-X-Gly heptad repeats%3B YhgE/Pip C-terminal domain%3B YhgE/Pip N-terminal domain gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0018 Arch_0019 Arch_0019 Arch_0019 29308 30975 + L-lactate permease COGs: COG1620 L-lactate permease~InterPro IPR003804~KEGG: cdi:DIP1033 putative L-lactate permease~PFAM: L-lactate permease~SPTR: A7BE61 Putative uncharacterized protein~PFAM: L-lactate permease~TIGRFAM: L-lactate transport gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0019 Arch_0020 Arch_0020 Arch_0020 31039 31827 + protein of unknown function DUF224 cysteine-rich region domain protein COGs: COG0247 Fe-S oxidoreductase~InterPro IPR004017~KEGG: xce:Xcel_0891 protein of unknown function DUF224 cysteine-rich region domain protein~PFAM: protein of unknown function DUF224 cysteine-rich region domain protein~SPTR: C0W209 (S)-2-hydroxy-acid oxidase~PFAM: Cysteine-rich domain gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0020 Arch_0021 Arch_0021 Arch_0021 31827 33353 + iron-sulfur cluster binding protein COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain~InterProIPR003741:IPR012285:IPR004452:IPR009051:IPR 017900~KEGG: nml:Namu_1033 iron-sulfur cluster binding protein~PFAM: protein of unknown function DUF162~SPTR: D0WLY3 Iron-sulfur cluster-binding protein~TIGRFAM: iron-sulfur cluster binding protein~PFAM: Domain of unknown function (DUF3390)%3B Uncharacterised ACR%2C YkgG family COG1556~TIGRFAM: 2[4Fe-4S] protein%2C putative gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0021 Arch_0022 Arch_0022 Arch_0022 33350 34003 + protein of unknown function DUF162 COGs: COG1556 conserved hypothetical protein~InterPro IPR003741~KEGG: nml:Namu_5228 protein of unknown function DUF162~PFAM: protein of unknown function DUF162~SPTR: A7BE65 Putative uncharacterized protein~PFAM: Uncharacterised ACR%2C YkgG family COG1556 gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0022 Arch_0023 Arch_0023 Arch_0023 34762 37215 + LPXTG-motif cell wall anchor domain protein InterPro IPR008454:IPR019931~KEGG: car:cauri_0187 surface-anchored fimbrial subunit~PFAM: Cna B domain protein~SPTR: A7BA22 Putative uncharacterized protein~TIGRFAM: LPXTG-motif cell wall anchor domain protein~PFAM: Cna protein B-type domain~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0023 Arch_0024 Arch_0024 Arch_0024 37240 38715 + LPXTG-motif cell wall anchor domain protein InterPro IPR001899:IPR019931~KEGG: cur:cur_1898 putative surface-anchored protein (fimbrial subunit)~SPTR: C2BJ18 Fimbrial subunit~TIGRFAM: LPXTG-motif cell wall anchor domain protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0024 Arch_0025 Arch_0025 Arch_0025 38911 40626 + 5'-Nucleotidase domain protein COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase~InterPro IPR008334:IPR006179~KEGG: mxa:MXAN_5361 putative 5'-nucleotidase~PFAM: 5'-Nucleotidase domain protein~SPTR: A8TK86 5'-Nucleotidase~PFAM: 5'-nucleotidase%2C C-terminal domain gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0025 Arch_0026 Arch_0026 Arch_0026 40803 43460 + Exo-alpha-sialidase COGs: COG4409 Neuraminidase (sialidase)~InterPro IPR011040~KEGG: pac:PPA1560 sialidase precursor~PRIAM: Exo-alpha-sialidase~SPTR: Q44562 Sialidase~PFAM: BNR/Asp-box repeat gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0026 Arch_0027 Arch_0027 Arch_0027 43596 43865 + pseudogene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0027 Arch_0028 Arch_0028 Arch_0028 44099 45943 + choline/carnitine/betaine transporter COGs: COG1292 Choline-glycine betaine transporter~InterPro IPR000060:IPR018093~KEGG: cgt:cgR_1005 hypothetical protein~PFAM: BCCT transporter~SPTR: C8NW06 BCCT family osmoprotectant transporter~TIGRFAM: choline/carnitine/betaine transporter~PFAM: BCCT family transporter~TIGRFAM: choline/carnitine/betaine transport gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0028 Arch_0029 Arch_0029 Arch_0029 46249 47247 + RarD protein%2C DMT superfamily transporter COGs: COG2962 permease~InterPro IPR000620:IPR004626~KEGG: pfl:PFL_3385 RarD protein~PFAM: protein of unknown function DUF6 transmembrane~SPTR: C0W1I2 DMT superfamily drug/metabolite transporter~TIGRFAM: RarD protein%2C DMT superfamily transporter~PFAM: EamA-like transporter family~TIGRFAM: ATP synthase subunit 6 (eukaryotes)%2Calso subunit A (prokaryotes)%3B rarD protein gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0029 Arch_0030 Arch_0030 Arch_0030 47504 49942 + hypothetical protein KEGG: car:cauri_0187 surface-anchored fimbrial subunit~SPTR: C1RFM0 Putative uncharacterized protein gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0030 Arch_0031 Arch_0031 Arch_0031 50172 51638 + LPXTG-motif cell wall anchor domain protein InterPro IPR008454:IPR019948:IPR001899:IPR019931~KEGG: cdi:DIP0235 putative fimbrial subunit~PFAM: Gram-positive anchor%3B Cna B domain protein~SPTR: Q1G4W1 Type-2 fimbrial major subunit~TIGRFAM: LPXTG-motif cell wall anchor domain protein~PFAM: Gram positive anchor~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0031 Arch_0032 Arch_0032 Arch_0032 51741 52616 + sortase family protein COGs: COG3764 Sortase (surface protein transpeptidase)~InterPro IPR005754~KEGG: cdi:DIP2225 putative fimbrial associated sortase-like protein~PFAM: peptidase C60 sortase A and B~SPTR: C2CUX9 Sortase (Surface protein transpeptidase)~TIGRFAM: sortase family protein~PFAM: Sortase family~TIGRFAM: LPXTG-site transpeptidase (sortase) family protein gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0032 Arch_0033 Arch_0033 Arch_0033 52741 53979 - conserved hypothetical protein InterPro IPR013781:IPR017853~KEGG: bfa:Bfae_10930 hypothetical protein~SPTR: C7MBG8 Putative uncharacterized protein gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0033 Arch_0034 Arch_0034 Arch_0034 53976 57023 - glycoside hydrolase family 38 COGs: COG0383 Alpha-mannosidase~InterPro IPR000602:IPR015341:IPR011682:IPR011330~KEGG: pac:PPA1459 alpha-mannosidase~PFAM: glycoside hydrolase family 38%3B Glycoside hydrolase family 38 central region%3B glycosyl hydrolase 38 domain protein~SPTR: Q6A7Q8 Alpha-mannosidase~PFAM: Glycosyl hydrolases family 38 C-terminal domain%3B Glycosyl hydrolases family 38 N-terminal domain%3B Alpha mannosidase%2C middle domain gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0034 Arch_0035 Arch_0035 Arch_0035 57174 58202 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761:IPR010982~KEGG: pac:PPA1457 LacI family transcriptional regulator~PFAM: regulatory protein LacI%3B periplasmic binding protein/LacI transcriptional regulator~SMART: regulatory protein LacI~SPTR: Q6A7R0 Putative LacI family transcriptional regulator~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0035 Arch_0036 Arch_0036 Arch_0036 58253 59203 + PfkB domain protein COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611:IPR002173~KEGG: bcv:Bcav_1099 fructokinase~PFAM: PfkB domain protein~SPTR: C1RNV6 Sugar kinase%2C ribokinase~PFAM: pfkB family carbohydrate kinase gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0036 Arch_0037 Arch_0037 Arch_0037 59335 60612 - N-acylglucosamine 2-epimerase COGs: COG2942 N-acyl-D-glucosamine 2-epimerase~InterPro IPR010819:IPR012341:IPR008928~KEGG: bcv:Bcav_0388 N-acylglucosamine 2-epimerase~PFAM: N-acylglucosamine 2-epimerase~SPTR: C0W0U9 N-acylglucosamine 2-epimerase~PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0037 Arch_0038 Arch_0038 Arch_0038 61302 62435 + Alcohol dehydrogenase zinc-binding domain protein COGs: COG1062 Zn-dependent alcohol dehydrogenase class III~InterPro IPR013154:IPR013149:IPR011032:IPR016040~KEGG: hypothetical protein~PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein~SPTR: D0YPM1 Alcohol dehydrogenase~PFAM: Alcohol dehydrogenase GroES-like domain%3B Zinc-binding dehydrogenase gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0038 Arch_0039 Arch_0039 Arch_0039 62830 64497 + sugar transporter InterPro IPR005828:IPR003663:IPR016196:IPR005829~KEGG: pac:PPA0467 putative sugar transporter YfiG~PFAM: General substrate transporter~SPTR: C0W6M7 MFS family major facilitator transporter~TIGRFAM: sugar transporter~PFAM: Sugar (and other) transporter~TIGRFAM: MFS transporter%2C sugar porter (SP) family gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0039 Arch_0040 Arch_0040 Arch_0040 64556 64816 - conserved hypothetical protein KEGG: cpy:Cphy_0503 hypothetical protein~SPTR: Q0CAY2 Putative uncharacterized protein gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0040 Arch_0041 Arch_0041 Arch_0041 65252 66115 - Myo-inosose-2 dehydratase COGs: COG1082 Sugar phosphate isomerase/epimerase~InterPro IPR012307:IPR013022~KEGG: pac:PPA0468 putative myo-inositol catabolism protein~PFAM: Xylose isomerase domain protein TIM barrel~PRIAM: Myo-inosose-2 dehydratase~SPTR: D0YPM5 Sugar phosphate isomerase/epimerase IolE~PFAM: Xylose isomerase-like TIM barrel gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0041 Arch_0042 Arch_0042 Arch_0042 66156 67142 - oxidoreductase domain protein COGs: COG0673 dehydrogenase and related protein~InterPro IPR000683:IPR004104:IPR016040~KEGG: pac:PPA0469 putative myo-inositol 2-dehydrogenase~PFAM: oxidoreductase domain protein%3B Oxidoreductase domain~SPTR: C0W6K5 Inositol 2-dehydrogenase~PFAM: Oxidoreductase family%2C NAD-binding Rossmann fold%3B Oxidoreductase family%2C C-terminal alpha/beta domain gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0042 Arch_0043 Arch_0043 Arch_0043 67179 68258 - Transaldolase COGs: COG0176 Transaldolase~InterPro IPR001585:IPR013785~KEGG: pac:PPA0454 transaldolase~PFAM: Transaldolase~SPTR: Q6AAL0 Transaldolase~PFAM: Transaldolase gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0043 Arch_0044 Arch_0044 Arch_0044 68491 69267 - transcriptional regulator%2C GntR family COGs: COG2188 Transcriptional regulators~InterPro IPR000524:IPR011663:IPR011991~KEGG: msm:MSMEG_4659 GntR-family protein transcriptional regulator~PFAM: UbiC transcription regulator-associated domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH~SPTR: C2KTD8 Transcriptional regulator~PFAM: Bacterial regulatory proteins%2C gntR family%3B UTRA domain gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0044 Arch_0045 Arch_0045 Arch_0045 69438 70427 + PfkB domain protein COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611:IPR002139~KEGG: rer:RER_20210 5-dehydro-2-deoxygluconokinase~PFAM: PfkB domain protein~SPTR: C0W6K8 Possible 5-dehydro-2-deoxygluconokinase~PFAM: pfkB family carbohydrate kinase gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0045 Arch_0046 Arch_0046 Arch_0046 70424 71287 + conserved hypothetical protein KEGG: sro:Sros_5538 hypothetical protein~SPTR: D0YPL4 Deoxyribose-phosphate aldolase superfamily protein gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0046 Arch_0047 Arch_0047 Arch_0047 71284 72180 + Myo-inositol catabolism IolB domain protein COGs: COG3718 Uncharacterized protein involved in inositol metabolism~InterPro IPR010669:IPR011051~KEGG: rop:ROP_10680 5-deoxy-glucuronate isomerase~PFAM: Myo-inositol catabolism IolB domain protein~SPTR: D0YPL3 5-deoxy-glucuronate isomerase~PFAM: KduI/IolB family gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0047 Arch_0048 Arch_0048 Arch_0048 72177 74060 + thiamine pyrophosphate protein central region COGs: COG3962 Acetolactate synthase~InterPro IPR012001:IPR012000:IPR011766~KEGG: pac:PPA0459 thiamine pyrophosphate-requiring enzyme%2C putative acetolactate synthase~PFAM: thiamine pyrophosphate protein central region%3B thiamine pyrophosphate protein TPP binding domain protein%3B thiamine pyrophosphate protein domain protein TPP-binding~SPTR: D0YPL2 3D-(3%2C5/4)-trihydroxycyclohexane-1%2C2-dione hydrolase~PFAM: Thiamine pyrophosphate enzyme%2C central domain%3B Thiamine pyrophosphate enzyme%2C N-terminal TPP binding domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0048 Arch_0049 Arch_0049 Arch_0049 74258 75751 + methylmalonate-semialdehyde dehydrogenase COGs: COG1012 NAD-dependent aldehyde dehydrogenase~InterPro IPR015590:IPR016162:IPR010061:IPR016161~KEGG: pac:PPA0461 methylmalonic acid semialdehyde dehydrogenase~PFAM: Aldehyde Dehydrogenase~SPTR: C0W6L2 Methylmalonate-semialdehyde dehydrogenase (Acylating)~TIGRFAM: methylmalonate-semialdehyde dehydrogenase~PFAM: Aldehyde dehydrogenase family~TIGRFAM: methylmalonic acid semialdehyde dehydrogenase gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0049 Arch_0050 Arch_0050 Arch_0050 75960 77477 - Microcystin LR degradation protein MlrC COGs: COG5476 conserved hypothetical protein~InterPro IPR015995:IPR010799:IPR009197~KEGG: pac:PPA2061 hypothetical protein~PFAM: Microcystin LR degradation protein MlrC-like%3B MlrC domain protein~SPTR: Q6A639 Conserved protein~PFAM: MlrC C-terminus%3B Protein of unknown function (DUF1485) gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0050 Arch_0051 Arch_0051 Arch_0051 77503 78672 - ROK family protein COGs: COG1940 Transcriptional regulator/sugar kinase~InterPro IPR000600~KEGG: pac:PPA2062 ROK family transcriptional regulator~PFAM: ROK family protein~SPTR: Q6A638 Transcriptional regulator%2C ROK family~PFAM: ROK family%3B IclR helix-turn-helix domain gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0051 Arch_0052 Arch_0052 Arch_0052 78859 80667 + extracellular solute-binding protein family 5 COGs: COG0747 ABC-type dipeptide transport system periplasmic component~InterPro IPR000914~KEGG: pac:PPA2063 putative peptide-binding transport protein~PFAM: extracellular solute-binding protein family 5~SPTR: C0W0N7 Peptide-binding transport protein~PFAM: Bacterial extracellular solute-binding proteins%2C family 5 Middle gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0052 Arch_0053 Arch_0053 Arch_0053 80747 81709 + binding-protein-dependent transport systems inner membrane component COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: pac:PPA2064 dipeptide transport system permease protein DppB~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Q6A636 Dipeptide transport system permease protein DppB~PFAM: Binding-protein-dependent transport system inner membrane component gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0053 Arch_0054 Arch_0054 Arch_0054 81706 82563 + binding-protein-dependent transport systems inner membrane component COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: pac:PPA2065 dipeptide transport system permease protein DppC~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Q6A635 Dipeptide transport system permease protein DppC~PFAM: Binding-protein-dependent transport system inner membrane component gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0054 Arch_0055 Arch_0055 Arch_0055 82572 84563 + oligopeptide/dipeptide ABC transporter%2C ATPase subunit COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component~InterProIPR003593:IPR003439:IPR013563:IPR010066:IPR 017871~KEGG: pac:PPA2066 ATP-binding protein of dipeptide ABC transporter~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase~SPTR: Q6A634 ATP-binding protein of dipeptide ABC transporter~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter%3B Oligopeptide/dipeptide transporter%2C C-terminal region~TIGRFAM: phosphonate C-P lyase system protein PhnK%3B oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal domain gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0055 Arch_0056 Arch_0056 Arch_0056 84569 85471 + ROK family protein COGs: COG1940 Transcriptional regulator/sugar kinase~InterPro IPR000600~KEGG: pac:PPA2359 putative transcriptional repressor protein~PFAM: ROK family protein~SPTR: Q6A633 Putative transcriptional repressor protein~PFAM: ROK family gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0056 Arch_0057 Arch_0057 Arch_0057 85465 86736 + Alpha-L-fucosidase COGs: COG3669 Alpha-L-fucosidase~InterPro IPR000933:IPR013781:IPR016286:IPR017853~KEGG: pac:PPA2070 alpha-L-fucosidase precursor~PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase)~PRIAM: Alpha-L-fucosidase~SMART: glycoside hydrolase family 29 (alpha-L-fucosidase)~SPTR: Q6A632 Alpha-L-fucosidase~PFAM: Alpha-L-fucosidase gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0057 Arch_0058 Arch_0058 Arch_0058 87163 87822 + CutC family protein COGs: COG3142 Uncharacterized protein involved in copper resistance~InterPro IPR005627~KEGG: sma:SAV_3917 homeostasis protein~PFAM: CutC family protein~SPTR: Q82GI0 Putative homeostasis protein~PFAM: CutC family gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0058 Arch_0059 Arch_0059 Arch_0059 87959 88837 + glycosyl transferase family 2 COGs: COG1216 glycosyltransferase~InterPro IPR001173~KEGG: sen:SACE_6472 putative dTDP-rhamnosyl transferase~PFAM: glycosyl transferase family 2~SPTR: C0W8B3 dTDP-rhamnosyl transferase~PFAM: Glycosyl transferase family 2 gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0059 Arch_0060 Arch_0060 Arch_0060 88960 89703 + glycerophosphoryl diester phosphodiesterase COGs: COG0584 Glycerophosphoryl diester phosphodiesterase~InterPro IPR004129:IPR017946:IPR000909~KEGG: pac:PPA1839 glycerophosphoryl diester phosphodiesterase~PFAM: glycerophosphoryl diester phosphodiesterase~SPTR: D0YTV4 Glycerophosphoryl diester phosphodiesterase~PFAM: Glycerophosphoryl diester phosphodiesterase family gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0060 Arch_0061 Arch_0061 Arch_0061 89823 91235 + major facilitator superfamily MFS_1 InterPro IPR011701:IPR016196~KEGG: pac:PPA1837 membrane protein%2C putative permease~PFAM: major facilitator superfamily MFS_1~SPTR: C0VTP9 Major facilitator family transporter~PFAM: Major Facilitator Superfamily gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0061 Arch_0062 Arch_0062 Arch_0062 91422 91940 + hypothetical protein KEGG: prw:PsycPRwf_1453 LysR family transcriptional regulator~SPTR: C2KPU0 Putative uncharacterized protein gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0062 Arch_0063 Arch_0063 Arch_0063 92238 92766 + pseudogene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0063 Arch_0064 Arch_0064 Arch_0064 92889 93896 - peptidase S1 and S6 chymotrypsin/Hap InterPro IPR001254:IPR009003:IPR001314:IPR018114~KEGG: cdi:DIP0736 putative protease~PFAM: peptidase S1 and S6 chymotrypsin/Hap~SMART: peptidase S1 and S6 chymotrypsin/Hap~SPTR: C2BVZ1 Protease~PFAM: Trypsin gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0064 Arch_0065 Arch_0065 Arch_0065 93899 94852 - conserved hypothetical protein KEGG: cdi:DIP0737 hypothetical protein~SPTR: C2BVZ2 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF418) gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0065 Arch_0066 Arch_0066 Arch_0066 95194 95613 + pseudogene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0066 Arch_0067 Arch_0067 Arch_0067 95705 96697 - dTDP-glucose 4%2C6-dehydratase COGs: COG1088 dTDP-D-glucose 4 6-dehydratase~InterPro IPR001509:IPR016040:IPR005888~KEGG: xce:Xcel_2563 dTDP-glucose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase~SPTR: D0WPK4 dTDP-glucose 4%2C6-dehydratase~TIGRFAM: dTDP-glucose 4%2C6-dehydratase~PFAM: NAD dependent epimerase/dehydratase family~TIGRFAM: dTDP-glucose 4%2C6-dehydratase gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0067 Arch_0068 Arch_0068 Arch_0068 96727 97953 - ABC transporter related protein COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: lxx:Lxx05010 lipopolysaccharide exporter~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C1RIM8 ABC-type polysaccharide/polyol phosphate transport system%2C ATPase component~PFAM: ABC transporter gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0068 Arch_0069 Arch_0069 Arch_0069 97956 98891 - ABC-2 type transporter COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component~InterPro IPR013525:IPR000412~KEGG: lxx:Lxx05020 lipopolysaccharide exporter~PFAM: ABC-2 type transporter~SPTR: C0W8E3 Polysaccharide ABC superfamily ATP binding cassette transporter%2C membrane protein~PFAM: ABC-2 type transporter gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0069 Arch_0070 Arch_0070 Arch_0070 99082 100605 + hypothetical protein KEGG: nml:Namu_4203 glycosyl transferase family 2~SPTR: C1RIN5 Predicted glycosyltransferase (Fragment) gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0070 Arch_0071 Arch_0071 Arch_0071 100602 103040 + glycosyl transferase family 2 COGs: COG1216 glycosyltransferase~InterPro IPR001173:IPR001296~KEGG: nml:Namu_4203 glycosyl transferase family 2~PFAM: glycosyl transferase family 2%3B glycosyl transferase group 1~SPTR: C1RIN5 Predicted glycosyltransferase (Fragment)~PFAM: Glycosyl transferases group 1%3B Glycosyl transferase family 2~TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase%2C Streptococcus agalactiae type gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0071 Arch_0072 Arch_0072 Arch_0072 103068 103784 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: bfa:Bfae_20890 glycosyl transferase~PFAM: glycosyl transferase family 2~SPTR: C7ME89 Glycosyl transferase~PFAM: Glycosyl transferase family 2 gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0072 Arch_0073 Arch_0073 Arch_0073 103793 104161 + conserved hypothetical protein KEGG: cai:Caci_8173 hypothetical protein~SPTR: C0VZS1 Putative uncharacterized protein~PFAM: Uncharacterized conserved protein (DUF2304) gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0073 Arch_0074 Arch_0074 Arch_0074 104168 105514 + hypothetical protein KEGG: ace:Acel_0695 hypothetical protein~SPTR: A0LSQ8 Putative uncharacterized protein gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0074 Arch_0075 Arch_0075 Arch_0075 105518 105877 - conserved hypothetical protein KEGG: rsa:RSal33209_1610 hypothetical protein~SPTR: D0WPI8 Putative uncharacterized protein~PFAM: Uncharacterized conserved protein (DUF2304) gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0075 Arch_0076 Arch_0076 Arch_0076 105880 106608 - glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: xce:Xcel_2568 glycosyl transferase family 2~PFAM: glycosyl transferase family 2~SPTR: D0WPI9 Dolichyl-phosphate mannose synthase~PFAM: Glycosyl transferase family 2 gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0076 Arch_0077 Arch_0077 Arch_0077 106734 108260 + Protein of unknown function DUF2142%2C membrane InterPro IPR018674~KEGG: lxx:Lxx05060 hypothetical protein~PFAM: Protein of unknown function DUF2142%2C membrane~SPTR: A7BEE9 Putative uncharacterized protein~PFAM: Predicted membrane protein (DUF2142) gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0077 Arch_0078 Arch_0078 Arch_0078 108237 109472 - putative integral membrane protein KEGG: mva:Mvan_5388 putative integral membrane protein~SPTR: D1BC66 Putative uncharacterized protein gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0078 Arch_0079 Arch_0079 Arch_0079 109526 110395 + glycosyl transferase family 2 InterPro IPR001173~KEGG: art:Arth_2683 glycosyl transferase family protein~PFAM: glycosyl transferase family 2~SPTR: A0JYE2 Glycosyl transferase%2C family 2~PFAM: Glycosyl transferase family 2 gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0079 Arch_0080 Arch_0080 Arch_0080 110523 111524 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: llk:LLKF_0209 glycosyltransferase%2C family 2~PFAM: glycosyl transferase family 2~SPTR: C0FV38 Putative uncharacterized protein~PFAM: Glycosyl transferase family 2 gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0080 Arch_0081 Arch_0081 Arch_0081 111539 112399 - LicD family protein COGs: COG3475 LPS biosynthesis protein~InterPro IPR007074~KEGG: apv:Apar_1000 LicD family protein~PFAM: LicD family protein~SPTR: C0W8F2 Possible lipopolysaccharide cholinephosphotransferase~PFAM: LICD Protein Family gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0081 Arch_0082 Arch_0082 Arch_0082 112409 113356 - protein of unknown function DUF6 transmembrane InterPro IPR000620~KEGG: ccu:Ccur_08310 integral membrane protein DUF6~PFAM: protein of unknown function DUF6 transmembrane~SPTR: C0W8F3 Integral membrane protein~PFAM: EamA-like transporter family gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0082 Arch_0083 Arch_0083 Arch_0083 113353 115164 - transcriptional regulator%2C MarR family COGs: COG4750 CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes~InterPro IPR000835:IPR002573:IPR011009~KEGG: apv:Apar_1003 transcriptional regulator%2C MarR family~PFAM: Choline/ethanolamine kinase%3B regulatory protein MarR~SPTR: A7BEG2 Putative uncharacterized protein~PFAM: Choline/ethanolamine kinase%3B Nucleotidyl transferase gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0083 Arch_0084 Arch_0084 Arch_0084 115282 116376 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: ape:APE_2066.1 glycosyl transferase%2C group 1~PFAM: glycosyl transferase group 1~SPTR: C0W8F1 N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein~PFAM: Glycosyl transferases group 1 gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0084 Arch_0085 Arch_0085 Arch_0085 116530 117795 + polysaccharide biosynthesis protein InterPro IPR002797~KEGG: apv:Apar_0999 polysaccharide biosynthesis protein~PFAM: polysaccharide biosynthesis protein~SPTR: C0W8F7 Putative uncharacterized protein~PFAM: Polysaccharide biosynthesis protein gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0085 Arch_0086 Arch_0086 Arch_0086 117864 118712 - dTDP-4-dehydrorhamnose reductase COGs: COG1091 dTDP-4-dehydrorhamnose reductase~InterPro IPR005913:IPR016040~KEGG: bcv:Bcav_1209 dTDP-4-dehydrorhamnose reductase~PFAM: dTDP-4-dehydrorhamnose reductase~PRIAM: dTDP-4-dehydrorhamnose reductase~SPTR: D0WPJ0 dTDP-4-dehydrorhamnose reductase~TIGRFAM: dTDP-4-dehydrorhamnose reductase~PFAM: RmlD substrate binding domain~TIGRFAM: dTDP-4-dehydrorhamnose reductase gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0086 Arch_0087 Arch_0087 Arch_0087 118915 119082 - hypothetical protein KEGG: mxa:MXAN_0916 putative kynurenine 3-monooxygenase~SPTR: C1YGQ0 Putative uncharacterized protein gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0087 Arch_0088 Arch_0088 Arch_0088 119095 120411 - conserved hypothetical protein COGs: COG1106 ATPase~KEGG: cef:CE2900 hypothetical protein~SPTR: Q8FSZ2 Putative uncharacterized protein gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0088 Arch_0089 Arch_0089 Arch_0089 120519 121136 + dTDP-4-dehydrorhamnose 3%2C5-epimerase COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase~InterPro IPR000888:IPR014710:IPR011051~KEGG: xce:Xcel_2560 dTDP-4-dehydrorhamnose 3%2C5-epimerase~PFAM: dTDP-4-dehydrorhamnose 35-epimerase related~PRIAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase~SPTR: D0WPJ1 dTDP-4-dehydrorhamnose 3%2C5-epimerase~PFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase~TIGRFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0089 Arch_0090 Arch_0090 Arch_0090 121237 123575 + pseudogene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0090 Arch_0091 Arch_0091 Arch_0091 121541 122697 + transposase IS3/IS911 family protein InterPro IPR002514~KEGG: kse:Ksed_22010 transposase~PFAM: transposase IS3/IS911 family protein~SPTR: C2BM30 ISMyma01 transposase~manually curated~PFAM: Integrase core domain%3B Transposase gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0091 Arch_0092 Arch_0092 Arch_0092 123598 124464 - rhamnosyltransferase COGs: COG1216 glycosyltransferase~InterPro IPR001173:IPR006446~KEGG: ajs:Ajs_0541 rhamnosyltransferase~PFAM: glycosyl transferase family 2~SPTR: D0WPJ2 Rhamnosyltransferase~TIGRFAM: rhamnosyltransferase~PFAM: Glycosyl transferase family 2~TIGRFAM: L-rhamnosyltransferase gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0092 Arch_0093 Arch_0093 Arch_0093 124464 125339 - glucose-1-phosphate thymidylyltransferase COGs: COG1209 dTDP-glucose pyrophosphorylase~InterPro IPR005835:IPR005907~KEGG: xce:Xcel_2557 glucose-1-phosphate thymidylyltransferase~PFAM: Nucleotidyl transferase~SPTR: A7B922 Glucose-1-phosphate thymidylyltransferase~TIGRFAM: glucose-1-phosphate thymidylyltransferase~PFAM: Nucleotidyl transferase~TIGRFAM: glucose-1-phosphate thymidylyltransferase%2C short form gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0093 Arch_0094 Arch_0094 Arch_0094 125425 126387 - protein of unknown function DUF6 transmembrane InterPro IPR000620~KEGG: ccu:Ccur_08310 integral membrane protein DUF6~PFAM: protein of unknown function DUF6 transmembrane~SPTR: C0W8F3 Integral membrane protein~PFAM: EamA-like transporter family gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0094 Arch_0095 Arch_0095 Arch_0095 126513 127382 - hypothetical protein KEGG: rsa:RSal33209_0014 hypothetical protein~SPTR: A9WR40 Putative uncharacterized protein gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0095 Arch_0096 Arch_0096 Arch_0096 127588 128118 + Peptidylprolyl isomerase COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family~InterPro IPR002130:IPR015891~KEGG: bcv:Bcav_0019 peptidylprolyl isomerase~PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type~PRIAM: Peptidylprolyl isomerase~SPTR: D0YP84 Peptidyl-prolyl cis-trans isomerase B~PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0096 Arch_0097 Arch_0097 Arch_0097 128136 128768 + Rhomboid family protein COGs: COG0705 membrane protein~InterPro IPR002610~KEGG: jde:Jden_0165 rhomboid family protein~PFAM: Rhomboid family protein~SPTR: A7BB19 Putative uncharacterized protein~PFAM: Rhomboid family gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0097 Arch_0098 Arch_0098 Arch_0098 128819 129088 - protein of unknown function UPF0233 InterPro IPR009619~KEGG: bcv:Bcav_0021 protein of unknown function UPF0233~PFAM: protein of unknown function UPF0233~SPTR: D0WKX8 Putative cylicin-2~PFAM: Uncharacterised protein family (UPF0233) gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0098 Arch_0099 Arch_0099 Arch_0099 129213 130154 + sortase family protein COGs: COG3764 Sortase (surface protein transpeptidase)~InterPro IPR005754~KEGG: rmu:RMDY18_19620 sortase~PFAM: peptidase C60 sortase A and B~SPTR: C6R304 Sortase family protein~TIGRFAM: sortase family protein~PFAM: Sortase family~TIGRFAM: LPXTG-site transpeptidase (sortase) family protein gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0099 Arch_0100 Arch_0100 Arch_0100 130157 130312 + hypothetical protein KEGG: jde:Jden_0284 hypothetical protein~SPTR: C7QZ49 Putative uncharacterized protein gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0100 Arch_0101 Arch_0101 Arch_0101 130585 131784 - transposase IS116/IS110/IS902 family protein InterPro IPR002525:IPR003346~KEGG: mlu:Mlut_12160 transposase~PFAM: transposase IS116/IS110/IS902 family protein%3B transposase IS111A/IS1328/IS1533~SPTR: C0W956 Transposase%2C IS111A/IS1328/IS1533 (Fragment)~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0101 Arch_0102 Arch_0102 Arch_0102 132085 133986 - serine/threonine protein kinase with PASTA sensor(s) COGs: COG0515 Serine/threonine protein kinase~InterProIPR020635:IPR002290:IPR005543:IPR017442:IPR 005503:IPR000719:IPR011009:IPR017441:IPR008271~KEGG: xce:Xcel_0018 serine/threonine protein kinase with PASTA sensor(s)~PFAM: Serine/threonine-protein kinase-like domain%3B flagellar basal body-associated protein FliL%3B PASTA domain containing protein~SMART: serine/threonine protein kinase%3B Tyrosine-protein kinase%2C subgroup%2C catalytic domain%3B PASTA domain containing protein~SPTR: D0WKX3 Putative serine/threonine protein kinase~PFAM: Protein kinase domain%3B PASTA domain gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0102 Arch_0103 Arch_0103 Arch_0103 134071 135516 - penicillin-binding protein transpeptidase COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2~InterPro IPR001460:IPR012338~KEGG: jde:Jden_0172 peptidoglycan glycosyltransferase~PFAM: penicillin-binding protein transpeptidase~SPTR: D0WKX2 Penicillin-binding protein 2~PFAM: Penicillin binding protein transpeptidase domain gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0103 Arch_0104 Arch_0104 Arch_0104 135513 137006 - cell cycle protein COGs: COG0772 Bacterial cell division membrane protein~InterPro IPR001182~KEGG: bcv:Bcav_0029 cell cycle protein~PFAM: cell cycle protein~SPTR: D0WKX1 Cell division protein FtsW~PFAM: Cell cycle protein gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0104 Arch_0105 Arch_0105 Arch_0105 137003 138322 - protein serine/threonine phosphatase COGs: COG0631 Serine/threonine protein phosphatase~InterPro IPR001932:IPR014045~KEGG: bcv:Bcav_0030 protein serine/threonine phosphatase~PFAM: Protein phosphatase 2C-like~SMART: protein phosphatase 2C domain protein~SPTR: D0WKX0 Protein phosphatase 2C~PFAM: Protein phosphatase 2C gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0105 Arch_0106 Arch_0106 Arch_0106 138319 138783 - FHA domain containing protein COGs: COG1716 FOG: FHA domain~InterPro IPR000253:IPR008984~KEGG: jde:Jden_0175 FHA domain containing protein~PFAM: Forkhead-associated protein~SMART: Forkhead-associated protein~SPTR: D0WKW9 Putative FHA domain protein~PFAM: FHA domain gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0106 Arch_0107 Arch_0107 Arch_0107 138780 139478 - FHA domain containing protein COGs: COG1716 FOG: FHA domain~InterPro IPR000253:IPR008984~KEGG: bcv:Bcav_0032 FHA domain containing protein~PFAM: Forkhead-associated protein~SMART: Forkhead-associated protein~SPTR: C1RFN6 FHA domain-containing protein~PFAM: Protein of unknown function (DUF2662)%3B FHA domain gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0107 Arch_0108 Arch_0108 Arch_0108 139990 140796 - protein of unknown function UPF0126 COGs: COG2860 membrane protein~InterPro IPR005115~KEGG: krh:KRH_07930 hypothetical protein~PFAM: protein of unknown function UPF0126~SPTR: B2GKC0 Hypothetical membrane protein~PFAM: UPF0126 domain gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0108 Arch_0109 Arch_0109 Arch_0109 140822 141730 - Appr-1-p processing domain protein COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1~InterPro IPR002589~KEGG: sse:Ssed_1314 hypothetical protein~PFAM: Appr-1-p processing domain protein~SMART: Appr-1-p processing domain protein~SPTR: D0WKT6 Appr-1-p processing enzyme family domain protein~PFAM: Macro domain gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0109 Arch_0110 Arch_0110 Arch_0110 141801 142385 + ribonuclease H COGs: COG0328 Ribonuclease HI~InterPro IPR002156:IPR012337~KEGG: mmr:Mmar10_2217 RNase HI~PFAM: ribonuclease H~SPTR: D0WKT5 Ribonuclease HI~PFAM: RNase H gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0110 Arch_0111 Arch_0111 Arch_0111 142428 144605 + Oligopeptidase B COGs: COG1770 Protease II~InterPro IPR004106:IPR001375:IPR002470~KEGG: bfa:Bfae_03460 oligopeptidase B~PFAM: peptidase S9 prolyl oligopeptidase active site domain protein%3B peptidase S9A prolyl oligopeptidase domain protein beta-propeller~PRIAM: Oligopeptidase B~SPTR: D0WKS9 Protease II~PFAM: Prolyl oligopeptidase%2C N-terminal beta-propeller domain%3B Prolyl oligopeptidase family gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0111 Arch_0112 Arch_0112 Arch_0112 144736 145677 + hypothetical protein InterPro IPR011335~KEGG: bfa:Bfae_23020 hypothetical protein~SPTR: C2KMY9 Putative uncharacterized protein gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0112 Arch_0113 Arch_0113 Arch_0113 146096 147433 - MTA/SAH nucleosidase COGs: COG0775 Nucleoside phosphorylase~InterPro IPR000845:IPR010049~KEGG: krh:KRH_15970 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase~PFAM: purine or other phosphorylase family 1~PRIAM: Adenosylhomocysteine nucleosidase~SPTR: D0WKS8 Methylthioadenosine nucleosidase/adenosylhomocysteine nucleosidase~TIGRFAM: MTA/SAH nucleosidase~PFAM: Phosphorylase superfamily~TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0113 Arch_0114 Arch_0114 Arch_0114 147430 147891 - quorum-sensing autoinducer 2 (AI-2)%2C LuxS COGs: COG1854 LuxS protein involved in autoinducer AI2 synthesis~InterPro IPR003815:IPR011249~KEGG: pac:PPA0450 S-ribosylhomocysteinase~PFAM: LuxS protein~PRIAM: S-ribosylhomocysteine lyase~SPTR: D0WKS7 S-ribosylhomocysteinase LuxS~PFAM: S-Ribosylhomocysteinase (LuxS) gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0114 Arch_0115 Arch_0115 Arch_0115 148131 148382 + glutaredoxin-like protein NrdH COGs: COG0695 Glutaredoxin and related protein~InterPro IPR002109:IPR012335:IPR011909:IPR012336~KEGG: bcv:Bcav_0095 glutaredoxin-like protein NrdH~PFAM: glutaredoxin~SPTR: D0WKQ6 Glutaredoxin~TIGRFAM: glutaredoxin-like protein NrdH~PFAM: Glutaredoxin~TIGRFAM: Glutaredoxin-like protein NrdH gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0115 Arch_0116 Arch_0116 Arch_0116 148417 148818 + NrdI protein COGs: COG1780 Protein involved in ribonucleotide reduction~InterPro IPR004465~KEGG: bfa:Bfae_24920 ribonucleoside-diphosphate reductase 2%2C operon protein NrdI~PFAM: NrdI family protein~SPTR: D0WKQ5 NrdI protein~TIGRFAM: NrdI protein~PFAM: NrdI Flavodoxin like~TIGRFAM: ribonucleoside-diphosphate reductase 2%2C operon protein nrdI gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0116 Arch_0117 Arch_0117 Arch_0117 148800 150950 + ribonucleoside-diphosphate reductase%2C alpha subunit InterProIPR013554:IPR013509:IPR000788:IPR013346:IPR 008926~KEGG: mtb:TBMG_00917 ribonucleoside-diphosphate reductase subunit alpha NrdE~PFAM: ribonucleotide reductase large subunit%3B Ribonucleotide reductase domain protein%3B Ribonucleotide reductase large subunit domain protein~SPTR: D0WKQ4 Ribonucleoside-diphosphate reductase%2C alpha subunit~TIGRFAM: ribonucleoside-diphosphate reductase%2C alpha subunit~PFAM: Ribonucleotide reductase N-terminal%3B Ribonucleotide reductase%2C all-alpha domain%3B Ribonucleotide reductase%2C barrel domain~TIGRFAM: ribonucleoside-diphosphate reductase%2C alpha subunit gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0117 Arch_0118 Arch_0118 Arch_0118 151151 151406 - pseudogene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0118 Arch_0119 Arch_0119 Arch_0119 151535 152509 + Ribonucleoside-diphosphate reductase COGs: COG0208 Ribonucleotide reductase beta subunit~InterPro IPR000358:IPR012348:IPR009078~KEGG: mab:MAB_3404c ribonucleotide-diphosphate reductase subunit beta~PFAM: ribonucleotide reductase~PRIAM: Ribonucleoside-diphosphate reductase~SPTR: D0WKN6 Ribonucleoside-diphosphate reductase%2C beta subunit~PFAM: Ribonucleotide reductase%2C small chain gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0119 Arch_0120 Arch_0120 Arch_0120 152460 152690 + hypothetical protein gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0120 Arch_0121 Arch_0121 Arch_0121 152747 153319 + protein tyrosine phosphatase COGs: COG0394 Protein-tyrosine-phosphatase~InterPro IPR017867:IPR000106~KEGG: kra:Krad_3711 protein tyrosine phosphatase~PFAM: Protein-tyrosine phosphatase%2C low molecular weight~SMART: Protein-tyrosine phosphatase%2C low molecular weight~SPTR: D0YS62 Low molecular weight protein-tyrosine-phosphatase~PFAM: Low molecular weight phosphotyrosine protein phosphatase gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0121 Arch_0122 Arch_0122 Arch_0122 153345 153809 - protein of unknown function SprT InterPro IPR006640~KEGG: nca:Noca_3805 protein of unknown function SprT~SMART: protein of unknown function SprT~SPTR: A1SNC0 Putative uncharacterized protein~PFAM: SprT-like family gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0122 Arch_0123 Arch_0123 Arch_0123 153866 154537 + hypothetical protein KEGG: rsh:Rsph17029_3288 hypothetical protein~SPTR: D0WKM7 Putative uncharacterized protein gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0123 Arch_0124 Arch_0124 Arch_0124 155024 155797 - ABC transporter related protein COGs: COG1126 ABC-type polar amino acid transport system ATPase component~InterPro IPR003593:IPR003439:IPR017871~KEGG: blt:Balat_0551 ATP binding protein of ABC transporter~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: A7BC62 Putative uncharacterized protein~PFAM: ABC transporter gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0124 Arch_0125 Arch_0125 Arch_0125 155811 156782 - polar amino acid ABC transporter%2C inner membrane subunit COGs: COG0765 ABC-type amino acid transport system permease component~InterPro IPR000515:IPR010065~KEGG: xce:Xcel_0100 polar amino acid ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: D0WQP0 ABC amino acid transporter%2C permease component~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: amine acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine family gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0125 Arch_0126 Arch_0126 Arch_0126 156788 157693 - extracellular solute-binding protein family 3 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain~InterPro IPR001320:IPR001638:IPR018313~KEGG: bln:Blon_2021 extracellular solute-binding protein%2C family 3~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3%3B ionotropic glutamate receptor~SPTR: B7GUE2 Extracellular solute-binding protein%2C family 3~PFAM: Bacterial extracellular solute-binding proteins%2C family 3 gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0126 Arch_0127 Arch_0127 Arch_0127 157829 161917 - ATP-dependent helicase HrpA COGs: COG1643 HrpA-like helicase~InterProIPR014001:IPR003593:IPR001650:IPR007502:IPR 011709:IPR014021:IPR010222~KEGG: jde:Jden_0240 ATP-dependent helicase HrpA~PFAM: helicase-associated domain protein%3B helicase domain protein%3B protein of unknown function DUF1605~SMART: DEAD-like helicase %3B AAA ATPase%3B helicase domain protein~SPTR: D0WKL4 ATP-dependent helicase HrpA~TIGRFAM: ATP-dependent helicase HrpA~PFAM: Helicase conserved C-terminal domain%3B Helicase associated domain (HA2)%3B Domain of unknown function (DUF3418)%3B Domain of unknown function (DUF1605)~TIGRFAM: ATP-dependent helicase HrpA gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0127 Arch_0128 Arch_0128 Arch_0128 162056 163075 + Endonuclease/exonuclease/phosphatase COGs: COG3021 conserved hypothetical protein~InterPro IPR005135~KEGG: bcv:Bcav_0233 endonuclease/exonuclease/phosphatase~PFAM: Endonuclease/exonuclease/phosphatase~SPTR: C5BVQ8 Endonuclease/exonuclease/phosphatase gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0128 Arch_0129 Arch_0129 Arch_0129 163206 164315 - Protein of unknown function DUF2183 COGs: COG4850 conserved hypothetical protein~InterPro IPR019236~KEGG: cgl:NCgl2176 hypothetical protein~PFAM: Protein of unknown function DUF2183~SPTR: D0WKK5 ABC transporter%2C ATP-binding protein~PFAM: Uncharacterized conserved protein (DUF2183) gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0129 Arch_0130 Arch_0130 Arch_0130 164516 165271 - transcriptional regulator%2C GntR family COGs: COG2188 Transcriptional regulators~InterPro IPR000524:IPR011663:IPR011991~KEGG: mva:Mvan_4015 UbiC transcription regulator-associated domain-containing protein~PFAM: UbiC transcription regulator-associated domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH~SPTR: A7BEH3 Putative uncharacterized protein~PFAM: Bacterial regulatory proteins%2C gntR family%3B UTRA domain gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0130 Arch_0131 Arch_0131 Arch_0131 165272 166954 - phosphoglucomutase%2C alpha-D-glucose phosphate-specific COGs: COG0033 Phosphoglucomutase~InterProIPR005844:IPR005845:IPR005846:IPR005843:IPR 016055:IPR005852:IPR016066~KEGG: xce:Xcel_0168 phosphoglucomutase%2C alpha-D-glucose phosphate-specific~PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III%3B phosphoglucomutase/phosphomannomutase~SPTR: D0WKG6 Phosphoglucomutase%2C alpha-D-glucose phosphate-specific~TIGRFAM: phosphoglucomutase%2C alpha-D-glucose phosphate-specific~PFAM: Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain II%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III%3B Phosphoglucomutase/phosphomannomutase%2C C-terminal domain%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain I~TIGRFAM: phosphoglucomutase%2C alpha-D-glucose phosphate-specific gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0131 Arch_0132 Arch_0132 Arch_0132 166980 169562 - conserved hypothetical protein COGs: COG0392 integral membrane protein~InterPro IPR005242:IPR018170~KEGG: bcv:Bcav_4032 integral membrane protein~PFAM: conserved hypothetical protein~SPTR: D0WKF9 Putative uncharacterized protein~PFAM: Uncharacterised protein family (UPF0104)~TIGRFAM: conserved hypothetical protein gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0132 Arch_0133 Arch_0133 Arch_0133 169636 171822 - heavy metal translocating P-type ATPase COGs: COG2217 Cation transport ATPase~InterProIPR006121:IPR008250:IPR005834:IPR006403:IPR 006416:IPR001757:IPR018303:IPR017969:IPR000150~KEGG: jde:Jden_2501 heavy metal translocating P-type ATPase~PFAM: E1-E2 ATPase-associated domain protein%3B Heavy metal transport/detoxification protein%3B Haloacid dehalogenase domain protein hydrolase~SPTR: D0WKF6 Copper-exporting ATPase~TIGRFAM: heavy metal translocating P-type ATPase%3B copper-translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: E1-E2 ATPase%3B Heavy-metal-associated domain%3B haloacid dehalogenase-like hydrolase~TIGRFAM: copper-(or silver)-translocating P-type ATPase%3B heavy metal translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0133 Arch_0134 Arch_0134 Arch_0134 171819 172046 - Heavy metal transport/detoxification protein InterPro IPR006121:IPR017969~KEGG: mlu:Mlut_21360 copper chaperone~PFAM: Heavy metal transport/detoxification protein~SPTR: C0W4J0 MerTP family Hg2+ permease%2C binding protein~PFAM: Heavy-metal-associated domain gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0134 Arch_0135 Arch_0135 Arch_0135 172125 173594 - hypothetical protein KEGG: stp:Strop_4046 hypothetical protein~SPTR: D0WKF3 Putative uncharacterized protein gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0135 Arch_0136 Arch_0136 Arch_0136 173658 174317 - SNARE associated Golgi protein-like protein COGs: COG0586 membrane-associated protein~InterPro IPR015414~KEGG: sro:Sros_4049 alkaline phosphatase~PFAM: SNARE associated Golgi protein~SPTR: C4ELT3 Uncharacterized membrane-associated protein~PFAM: SNARE associated Golgi protein gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0136 Arch_0137 Arch_0137 Arch_0137 174317 174745 - membrane protein of unknown function COGs: COG1950 membrane protein~InterPro IPR007165~KEGG: bcv:Bcav_3970 membrane protein of unknown function~PFAM: membrane protein of unknown function~SPTR: C5C571 Putative uncharacterized protein~PFAM: Membrane protein of unknown function gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0137 Arch_0138 Arch_0138 Arch_0138 174764 175528 - conserved hypothetical protein KEGG: jde:Jden_2483 hypothetical protein~SPTR: D0WKD9 Putative membrane protein gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0138 Arch_0139 Arch_0139 Arch_0139 175528 176460 - hypothetical protein KEGG: bcv:Bcav_2625 hypothetical protein~SPTR: D0WKD8 Putative uncharacterized protein gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0139 Arch_0140 Arch_0140 Arch_0140 176601 177329 + 3-dehydroquinate dehydratase COGs: COG0710 3-dehydroquinate dehydratase~InterPro IPR001381:IPR013785~KEGG: lmc:Lm4b_00514 3-dehydroquinate dehydratase~PFAM: dehydroquinase class I~PRIAM: 3-dehydroquinate dehydratase~SPTR: D0E052 3-dehydroquinate dehydratase%2C type I~PFAM: Type I 3-dehydroquinase~TIGRFAM: 3-dehydroquinate dehydratase%2C type I gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0140 Arch_0141 Arch_0141 Arch_0141 177746 178249 - phosphoribosyltransferase COGs: COG2236 phosphoribosyltransferase~InterPro IPR000836~KEGG: bfa:Bfae_22270 predicted phosphoribosyltransferase~PFAM: phosphoribosyltransferase~SPTR: C7MEM7 Predicted phosphoribosyltransferase~PFAM: Phosphoribosyl transferase domain gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0141 Arch_0142 Arch_0142 Arch_0142 178587 179525 + periplasmic solute binding protein COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin~InterPro IPR006127:IPR006128:IPR006129~KEGG: cdi:DIP0169 hypothetical protein~PFAM: periplasmic solute binding protein~SPTR: Q6NK68 Putative secreted protein~PFAM: Periplasmic solute binding protein family gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0142 Arch_0143 Arch_0143 Arch_0143 179540 180295 + ABC transporter related protein COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component~InterPro IPR003593:IPR003439:IPR017871~KEGG: cag:Cagg_3554 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: B8G9N9 ABC transporter related~PFAM: ABC transporter gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0143 Arch_0144 Arch_0144 Arch_0144 180292 181221 + ABC-3 protein COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components~InterPro IPR001626~KEGG: cdi:DIP0171 hypothetical protein~PFAM: ABC-3 protein~SPTR: C0VY74 Mn2+%2C Zn2+ ABC superfamily ATP binding cassette transporter%2C membrane protein~PFAM: ABC 3 transport family gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0144 Arch_0145 Arch_0145 Arch_0145 181218 182102 + ABC-3 protein COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components~InterPro IPR001626~KEGG: car:cauri_0331 manganese ABC transport system membrane protein~PFAM: ABC-3 protein~SPTR: C3PKJ4 Manganese ABC transport system membrane protein~PFAM: ABC 3 transport family gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0145 Arch_0146 Arch_0146 Arch_0146 182052 182729 - iron (metal) dependent repressor%2C DtxR family COGs: COG1321 Mn-dependent transcriptional regulator protein~InterPro IPR001367:IPR007167:IPR011991:IPR008988~KEGG: bfa:Bfae_31300 Mn-dependent transcriptional regulator~PFAM: iron dependent repressor%3B FeoA family protein~SMART: iron dependent repressor~SPTR: C7MB03 Mn-dependent transcriptional regulator~PFAM: FeoA domain%3B Iron dependent repressor%2C metal binding and dimerisation domain%3B Iron dependent repressor%2C N-terminal DNA binding domain gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0146 Arch_0147 Arch_0147 Arch_0147 182848 183429 + deoxycytidine triphosphate deaminase COGs: COG0717 Deoxycytidine deaminase~InterPro IPR008180:IPR011962~KEGG: bcv:Bcav_3823 deoxycytidine triphosphate deaminase~PFAM: deoxyUTP pyrophosphatase~SPTR: C5C4E1 Deoxycytidine triphosphate deaminase~TIGRFAM: deoxycytidine triphosphate deaminase~PFAM: 2'-deoxycytidine 5'-triphosphate deaminase (DCD)~TIGRFAM: deoxycytidine triphosphate deaminase gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0147 Arch_0148 Arch_0148 Arch_0148 183482 186328 + multisubunit sodium/proton antiporter%2C MrpB subunit%3B multisubunit sodium/proton antiporter%2C MrpA subunit COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit~InterPro IPR001750:IPR007182:IPR003916~KEGG: bcv:Bcav_3818 NADH dehydrogenase (quinone)~PFAM: NADH/Ubiquinone/plastoquinone (complex I)%3B Na+/H+ antiporter MnhB subunit-related protein~SPTR: C5C4D6 NADH dehydrogenase (Quinone)~PFAM: NADH-Ubiquinone/plastoquinone (complex I)%2C various chains%3B Domain related to MnhB subunit of Na+/H+ antiporter%3B 2.A.63.1 gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0148 Arch_0149 Arch_0149 Arch_0149 186328 186786 + multisubunit sodium/proton antiporter%2C MrpC subunit COGs: COG1006 Multisubunit Na+/H+ antiporter MnhC subunit~InterPro IPR001133~KEGG: bcv:Bcav_3817 NADH-ubiquinone oxidoreductase chain 4L~PFAM: NADH-ubiquinone oxidoreductase chain 4L~SPTR: C5C4D5 NADH-ubiquinone oxidoreductase chain 4L~PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L%3B 2.A.63.1 gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0149 Arch_0150 Arch_0150 Arch_0150 186783 188336 + multisubunit sodium/proton antiporter%2C MrpD subunit COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit~InterPro IPR001750:IPR003918~KEGG: bcv:Bcav_3816 NADH dehydrogenase (quinone)~PFAM: NADH/Ubiquinone/plastoquinone (complex I)~SPTR: C5C4D4 NADH dehydrogenase (Quinone)~PFAM: NADH-Ubiquinone/plastoquinone (complex I)%2C various chains~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain N%3B 2.A.63.1 gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0150 Arch_0151 Arch_0151 Arch_0151 188329 188940 + multisubunit sodium/proton antiporter%2C MrpE subunit COGs: COG1863 Multisubunit Na+/H+ antiporter MnhE subunit~InterPro IPR002758~KEGG: jde:Jden_2436 multisubunit Na+/H+ antiporter MnhE subunit-like protein~PFAM: cation antiporter~SPTR: D1BFC8 Multisubunit Na+/H+ antiporter%2C MnhE subunit~PFAM: Na+/H+ ion antiporter subunit%3B 2.A.63.1 gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0151 Arch_0152 Arch_0152 Arch_0152 188937 189197 + multisubunit sodium/proton antiporter%2C MrpF subunit InterPro IPR007208~KEGG: xce:Xcel_3183 multiple resistance and pH regulation protein F~PFAM: multiple resistance and pH regulation protein F~SPTR: D1C0I0 Multiple resistance and pH regulation protein F~PFAM: Multiple resistance and pH regulation protein F (MrpF / PhaF)%3B 2.A.63.1 gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0152 Arch_0153 Arch_0153 Arch_0153 189194 189553 + multisubunit sodium/proton antiporter%2C MrpG subunit COGs: COG1320 Multisubunit Na+/H+ antiporter MnhG subunit~InterPro IPR005133~KEGG: bcv:Bcav_3813 monovalent cation/proton antiporter%2C MnhG/PhaG subunit~PFAM: Na+/H+ antiporter subunit~SPTR: C5C4D1 Monovalent cation/proton antiporter%2C MnhG/PhaG subunit~TIGRFAM: monovalent cation/proton antiporter%2C MnhG/PhaG subunit~PFAM: Na+/H+ antiporter subunit~TIGRFAM: monovalent cation/proton antiporter%2C MnhG/PhaG subunit%3B 2.A.63.1 gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0153 Arch_0154 Arch_0154 Arch_0154 189596 189847 + conserved hypothetical protein KEGG: art:Arth_3867 hypothetical protein~SPTR: D0WKC7 Putative uncharacterized protein gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0154 Arch_0155 Arch_0155 Arch_0155 190061 191131 + ABC transporter%2C periplasmic binding protein%2C thiB subfamily COGs: COG4143 ABC-type thiamine transport system periplasmic component~InterPro IPR006059:IPR005948~KEGG: bcv:Bcav_3809 ABC transporter%2C periplasmic binding protein%2C ThiB subfamily~PFAM: extracellular solute-binding protein family 1~SPTR: C0W4A6 ABC superfamily ATP binding cassette transporter periplasmic-binding protein~TIGRFAM: ABC transporter%2C periplasmic binding protein%2C thiB subfamily~PFAM: Bacterial extracellular solute-binding protein~TIGRFAM: ABC transporter periplasmic binding protein%2C thiB subfamily gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0155 Arch_0156 Arch_0156 Arch_0156 191128 192939 + binding-protein-dependent transport systems inner membrane component COGs: COG1178 ABC-type Fe3+ transport system permease component~InterPro IPR000515~KEGG: bcv:Bcav_3808 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C5C4C6 Binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport system inner membrane component gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0156 Arch_0157 Arch_0157 Arch_0157 192936 193583 + ABC transporter related protein COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components~InterPro IPR003593:IPR003439:IPR017871~KEGG: mlu:Mlut_19480 ABC-type spermidine/putrescine transport system%2C ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C5C6U1 ABC-type spermidine/putrescine transport system%2C ATPase component~PFAM: ABC transporter gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0157 Arch_0158 Arch_0158 Arch_0158 193718 195124 - Glycoside hydrolase%2C family 20%2C catalytic core COGs: COG3525 N-acetyl-beta-hexosaminidase~InterPro IPR015883:IPR013781:IPR017853:IPR001540~KEGG: sco:SCO4860 secreted hydrolase~PFAM: Glycoside hydrolase%2C family 20%2C catalytic core~SPTR: C8P1S6 Lacto-N-biosidase~PFAM: Glycosyl hydrolase family 20%2C catalytic domain gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0158 Arch_0159 Arch_0159 Arch_0159 195124 196035 - binding-protein-dependent transport systems inner membrane component COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: bfa:Bfae_10970 carbohydrate ABC transporter membrane protein~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C7MBH2 Carbohydrate ABC transporter membrane protein~PFAM: Binding-protein-dependent transport system inner membrane component gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0159 Arch_0160 Arch_0160 Arch_0160 196032 197021 - binding-protein-dependent transport systems inner membrane component COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: bfa:Bfae_10960 carbohydrate ABC transporter membrane protein~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C7MBH1 Carbohydrate ABC transporter membrane protein~PFAM: Binding-protein-dependent transport system inner membrane component gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0160 Arch_0161 Arch_0161 Arch_0161 197053 198342 - extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: pac:PPA1454 solute-binding protein of transport system~PFAM: extracellular solute-binding protein family 1~SPTR: Q6A7R3 Solute-binding protein of transport system~PFAM: Bacterial extracellular solute-binding protein gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0161 Arch_0162 Arch_0162 Arch_0162 198866 200197 - conserved hypothetical protein COGs: COG1085 Galactose-1-phosphate uridylyltransferase~InterPro IPR011146:IPR000169~KEGG: cef:CE1985 hypothetical protein~SPTR: D0WKB8 UTP--hexose-1-phosphate uridylyltransferase gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0162 Arch_0163 Arch_0163 Arch_0163 200287 201588 + major facilitator superfamily MFS_1 COGs: COG2814 Arabinose efflux permease~InterPro IPR011701:IPR016196:IPR001958~KEGG: kse:Ksed_04650 arabinose efflux permease family protein~PFAM: major facilitator superfamily MFS_1~SPTR: C5VDV5 Permease%2C major facilitator family~PFAM: Major Facilitator Superfamily gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0163 Arch_0164 Arch_0164 Arch_0164 201643 202644 + Methicillin resistance protein COGs: COG2348 Uncharacterized protein involved in methicillin resistance~InterPro IPR003447:IPR016181~KEGG: apr:Apre_0286 methicillin resistance protein~PFAM: Methicillin resistance protein~SPTR: C7RFS6 Methicillin resistance protein~PFAM: FemAB family gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0164 Arch_0165 Arch_0165 Arch_0165 202644 203822 + protein of unknown function DUF201 COGs: COG3919 ATP-grasp protein~InterPro IPR003806:IPR011761:IPR005479~KEGG: apr:Apre_1663 putative ATP-grasp protein~PFAM: protein of unknown function DUF201~SPTR: C7RES1 Putative ATP-grasp protein~PFAM: Carbamoyl-phosphate synthase L chain%2C ATP binding domain gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0165 Arch_0166 Arch_0166 Arch_0166 203987 204418 + Cupin 2 conserved barrel domain protein COGs: COG0662 Mannose-6-phosphate isomerase~InterPro IPR013096:IPR014710:IPR011051~KEGG: sub:SUB0906 hypothetical protein~PFAM: Cupin 2 conserved barrel domain protein~SPTR: A8U7G9 Putative uncharacterized protein~PFAM: Cupin domain gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0166 Arch_0167 Arch_0167 Arch_0167 204573 206642 - Prolyl oligopeptidase COGs: COG1505 Serine protease of the peptidase family S9A~InterPro IPR001375:IPR004106:IPR002470~KEGG: sml:Smlt4084 putative exported oligopeptidase~PFAM: peptidase S9 prolyl oligopeptidase active site domain protein~PRIAM: Prolyl oligopeptidase~SPTR: B2FHW1 Putative exported oligoPEPTIDASE~PFAM: Prolyl oligopeptidase%2C N-terminal beta-propeller domain%3B Prolyl oligopeptidase family gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0167 Arch_0168 Arch_0168 Arch_0168 206847 208703 + chaperone protein DnaK COGs: COG0443 Molecular chaperone~InterPro IPR013126:IPR012725:IPR001023:IPR018181~KEGG: bcv:Bcav_3709 chaperone protein DnaK~PFAM: Heat shock protein 70~SPTR: D1BKD0 Chaperone protein DnaK~TIGRFAM: chaperone protein DnaK~PFAM: Hsp70 protein~TIGRFAM: chaperone protein DnaK gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0168 Arch_0169 Arch_0169 Arch_0169 208792 209361 + GrpE protein COGs: COG0576 Molecular chaperone GrpE (heat shock protein)~InterPro IPR000740:IPR009012~KEGG: bcv:Bcav_3708 GrpE protein~PFAM: GrpE protein~SPTR: D0WLG4 Protein GrpE~PFAM: GrpE gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0169 Arch_0170 Arch_0170 Arch_0170 209408 210403 + heat shock protein DnaJ domain protein COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~InterPro IPR001623:IPR002939:IPR008971:IPR003095~KEGG: bcv:Bcav_3707 chaperone DnaJ domain protein~PFAM: heat shock protein DnaJ domain protein%3B chaperone DnaJ domain protein~SMART: heat shock protein DnaJ domain protein~SPTR: D0WLG5 DnaJ protein~PFAM: DnaJ domain%3B DnaJ C terminal region gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0170 Arch_0171 Arch_0171 Arch_0171 210478 211122 + transcriptional regulator%2C MerR family InterPro IPR000551:IPR009061~KEGG: bfa:Bfae_12190 predicted transcriptional regulator~PFAM: regulatory protein MerR~SMART: regulatory protein MerR~SPTR: D0WLG6 Heat shock regulator protein HspR~PFAM: MerR family regulatory protein gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0171 Arch_0172 Arch_0172 Arch_0172 211122 211769 + NUDIX hydrolase InterPro IPR000086:IPR015797:IPR020084:IPR000059~KEGG: nca:Noca_0342 NUDIX hydrolase~PFAM: NUDIX hydrolase~SPTR: A1SDK1 NUDIX hydrolase~PFAM: NUDIX domain gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0172 Arch_0173 Arch_0173 Arch_0173 211766 212167 - hypothetical protein KEGG: GL12096 gene product from transcript GL12096-RA~SPTR: B3CIR0 Putative uncharacterized protein gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0173 Arch_0174 Arch_0174 Arch_0174 212378 215428 + LPXTG-motif cell wall anchor domain protein COGs: COG2374 extracellular nuclease~InterPro IPR005135:IPR019931~KEGG: cgb:cg2868 extracellular nuclease~PFAM: Endonuclease/exonuclease/phosphatase~SPTR: C0WGX8 Endonuclease/exonuclease/phosphatase~TIGRFAM: LPXTG-motif cell wall anchor domain protein~PFAM: Endonuclease/Exonuclease/phosphatase family~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0174 Arch_0175 Arch_0175 Arch_0175 215497 215994 - ybaK/ebsC protein COGs: COG2606 conserved hypothetical protein~InterPro IPR007214:IPR004369~KEGG: blj:BLD_0228 hypothetical protein~PFAM: YbaK/prolyl-tRNA synthetase associated region~SPTR: B3DQS8 Putative uncharacterized protein ebsC~TIGRFAM: ybaK/ebsC protein~PFAM: YbaK / prolyl-tRNA synthetases associated domain~TIGRFAM: ybaK/ebsC protein gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0175 Arch_0176 Arch_0176 Arch_0176 216009 216464 + GCN5-related N-acetyltransferase InterPro IPR000182:IPR016181~KEGG: psa:PST_1793 hypothetical protein~PFAM: GCN5-related N-acetyltransferase~SPTR: C2ARL2 Acetyltransferase%2C N-acetylglutamate synthase~PFAM: Acetyltransferase (GNAT) family gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0176 Arch_0177 Arch_0177 Arch_0177 216461 216976 - TspO and MBR like protein COGs: COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)~InterPro IPR004307~KEGG: art:Arth_1976 TspO and MBR like proteins~PFAM: TspO/MBR family protein~SPTR: A0JWD7 TspO and MBR like proteins~PFAM: TspO/MBR family gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0177 Arch_0178 Arch_0178 Arch_0178 217145 218203 + Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain protein COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase~InterPro IPR020058:IPR014729:IPR020060:IPR001412~KEGG: mgi:Mflv_1233 glutamyl-Q tRNA(Asp) synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain~SPTR: D0WLH0 Glutamate--tRNA ligase~PFAM: tRNA synthetases class I (E and Q)%2C catalytic domain gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0178 Arch_0179 Arch_0179 Arch_0179 218644 218838 - conserved hypothetical protein KEGG: car:cauri_1311 hypothetical protein~SPTR: C6RBR2 Putative uncharacterized protein gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0179 Arch_0180 Arch_0180 Arch_0180 219597 222206 + ATP-dependent chaperone ClpB COGs: COG0542 ATPase with chaperone activity ATP-binding subunit~InterProIPR003593:IPR004176:IPR003959:IPR013093:IPR 019489:IPR017730:IPR001270:IPR018368~KEGG: bcv:Bcav_3653 ATP-dependent chaperone ClpB~PFAM: ATPase AAA-2 domain protein%3B AAA ATPase central domain protein%3B Clp domain protein%3B Clp ATPase-like~SMART: AAA ATPase~SPTR: D0WLI6 ATP-dependent chaperone protein ClpB~TIGRFAM: ATP-dependent chaperone ClpB~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B Clp amino terminal domain%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent chaperone ClpB gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0180 Arch_0181 Arch_0181 Arch_0181 222237 223733 + amino acid permease-associated region COGs: COG1113 Gamma-aminobutyrate permease and related permease~InterPro IPR004841:IPR002293:IPR004840~KEGG: sen:SACE_2119 amino acid permease-associated region~PFAM: amino acid permease-associated region~SPTR: C2KT84 APC family amino acid-polyamine-organocation transporter~PFAM: Amino acid permease gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0181 Arch_0182 Arch_0182 Arch_0182 224065 225144 - Myo-inositol-1-phosphate synthase COGs: COG1260 Myo-inositol-1-phosphate synthase~InterPro IPR002587:IPR013021:IPR016040~KEGG: cef:CE2831 hypothetical protein~PFAM: Myo-inositol-1-phosphate synthase%3B Myo-inositol-1-phosphate synthase GAPDH domain protein~SPTR: Q8FLN7 Putative uncharacterized protein~PFAM: Myo-inositol-1-phosphate synthase~TIGRFAM: inositol 1-phosphate synthase%2C Actinobacterial type gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0182 Arch_0183 Arch_0183 Arch_0183 225487 226308 + beta-lactamase COGs: COG1680 Beta-lactamase class C and other penicillin binding protein~InterPro IPR001466:IPR012338~KEGG: nfa:nfa16050 hypothetical protein~PFAM: beta-lactamase~SPTR: D0WLK5 Beta-lactamase~PFAM: Beta-lactamase gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0183 Arch_0184 Arch_0184 Arch_0184 226370 227179 - exodeoxyribonuclease III Xth COGs: COG0708 Exonuclease III~InterPro IPR005135:IPR004808~KEGG: jde:Jden_2428 exodeoxyribonuclease III Xth~PFAM: Endonuclease/exonuclease/phosphatase~SPTR: D0WLN3 Exodeoxyribonuclease III~TIGRFAM: exodeoxyribonuclease III Xth~PFAM: Endonuclease/Exonuclease/phosphatase family~TIGRFAM: exodeoxyribonuclease III%3B exodeoxyribonuclease III (xth) gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0184 Arch_0185 Arch_0185 Arch_0185 227216 227983 + short-chain dehydrogenase/reductase SDR COGs: COG0300 Short-chain dehydrogenase of various substrate specificities~InterPro IPR002198:IPR016040:IPR002347~KEGG: bcv:Bcav_3647 short-chain dehydrogenase/reductase SDR~PFAM: short-chain dehydrogenase/reductase SDR~SPTR: D0WLN7 Oxidoreductase%2C short-chain dehydrogenase/reductase family~PFAM: short chain dehydrogenase gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0185 Arch_0186 Arch_0186 Arch_0186 228023 228410 + pseudogene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0186 Arch_0187 Arch_0187 Arch_0187 228442 228846 + NUDIX hydrolase InterPro IPR000086:IPR015797:IPR020476~KEGG: cgb:cg1303 NTP pyrophosphohydrolase~PFAM: NUDIX hydrolase~SPTR: Q8NR99 NTP pyrophosphohydrolases including oxidative damage repair enzymes~PFAM: NUDIX domain~TIGRFAM: mutator mutT protein gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0187 Arch_0188 Arch_0188 Arch_0188 228849 229414 + pseudogene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0188 Arch_0189 Arch_0189 Arch_0189 229453 229902 + hypothetical protein KEGG: bcv:Bcav_3646 orotate phosphoribosyltransferase~SPTR: C0VYD8 Orotate phosphoribosyltransferase gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0189 Arch_0190 Arch_0190 Arch_0190 229895 230575 + tRNA/rRNA methyltransferase (SpoU) COGs: COG0566 rRNA methylase~InterPro IPR001537~KEGG: kra:Krad_4172 tRNA/rRNA methyltransferase (SpoU)~PFAM: tRNA/rRNA methyltransferase (SpoU)~SPTR: D0WLP3 RNA methyltransferase%2C TrmH family~PFAM: SpoU rRNA Methylase family gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0190 Arch_0191 Arch_0191 Arch_0191 230694 231485 - conserved hypothetical protein KEGG: gbr:Gbro_1394 hypothetical protein~SPTR: D0YUD4 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF559) gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0191 Arch_0192 Arch_0192 Arch_0192 231814 232836 + fructose-bisphosphate aldolase%2C class II COGs: COG0191 Fructose/tagatose bisphosphate aldolase~InterPro IPR000771:IPR013785:IPR006411~KEGG: xce:Xcel_3142 fructose-bisphosphate aldolase%2C class II~PFAM: ketose-bisphosphate aldolase class-II~SPTR: C0VYF0 Fructose-bisphosphate aldolase~TIGRFAM: fructose-bisphosphate aldolase%2C class II%3B ketose-bisphosphate aldolase~PFAM: Fructose-bisphosphate aldolase class-II~TIGRFAM: ketose-bisphosphate aldolases%3B fructose-bisphosphate aldolase%2C class II%2C yeast/E. coli subtype gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0192 Arch_0193 Arch_0193 Arch_0193 233063 233596 + glycoside hydrolase family 2 sugar binding protein InterPro IPR006104~KEGG: bcv:Bcav_4017 hypothetical protein~PFAM: glycoside hydrolase family 2 sugar binding~SPTR: C0W1A2 Putative uncharacterized protein~PFAM: Glycosyl hydrolases family 2%2C sugar binding domain gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0193 Arch_0194 Arch_0194 Arch_0194 233816 235135 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: pac:PPA2295 solute-binding lipoprotein~PFAM: extracellular solute-binding protein family 1~SPTR: C0W274 ABC superfamily ATP binding cassette transporter%2C solute-binding lipoprotein~PFAM: Bacterial extracellular solute-binding protein gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0194 Arch_0195 Arch_0195 Arch_0195 235193 236161 + binding-protein-dependent transport systems inner membrane component COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: blo:BL1639 permease of ABC transporter for sugars~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C0W275 Sugar ABC superfamily ATP binding cassette transporter%2C permease~PFAM: Binding-protein-dependent transport system inner membrane component gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0195 Arch_0196 Arch_0196 Arch_0196 236161 237072 + binding-protein-dependent transport systems inner membrane component COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: pac:PPA2293 binding-protein-dependent transport system~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C0W276 Sugar ABC superfamily ATP binding cassette transporter%2C membrane protein~PFAM: Binding-protein-dependent transport system inner membrane component gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0196 Arch_0197 Arch_0197 Arch_0197 237149 237688 - hypothetical protein KEGG: nfa:nfa51010 hypothetical protein~SPTR: C1RFL0 Putative uncharacterized protein gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0197 Arch_0198 Arch_0198 Arch_0198 237688 238488 - hypothetical protein KEGG: pac:PPA1774 hypothetical protein~SPTR: D0WP61 Putative uncharacterized protein gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0198 Arch_0199 Arch_0199 Arch_0199 238622 239605 - hypothetical protein KEGG: pac:PPA1774 hypothetical protein~SPTR: D0WLQ6 Acidic proline-rich protein PRP33 gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0199 Arch_0200 Arch_0200 Arch_0200 239913 241763 + Phosphoenolpyruvate carboxykinase (GTP) COGs: COG1274 Phosphoenolpyruvate carboxykinase (GTP)~InterPro IPR008209:IPR008210:IPR013035:IPR018091~KEGG: tcu:Tcur_2819 phosphoenolpyruvate carboxykinase (GTP)~PFAM: phosphoenolpyruvate carboxykinase (GTP)~PRIAM: Phosphoenolpyruvate carboxykinase (GTP)~SPTR: A7BA26 Putative uncharacterized protein~PFAM: Phosphoenolpyruvate carboxykinase gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0200 Arch_0201 Arch_0201 Arch_0201 241972 242871 + Phosphoribosylaminoimidazolesuccinocarboxamide synthase COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase~InterPro IPR001636:IPR013816:IPR010916~KEGG: mlu:Mlut_18500 phosphoribosylaminoimidazole-succinocarboxamide synthase~PFAM: SAICAR synthetase~PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase~SPTR: D0WLR3 Phosphoribosylaminoimidazolesuccinocarboxamide synthase~PFAM: SAICAR synthetase~TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0201 Arch_0202 Arch_0202 Arch_0202 243001 244338 + Glutamate dehydrogenase (NADP(+)) COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase~InterProIPR006097:IPR006096:IPR016040:IPR014362:IPR 006095~KEGG: jde:Jden_2359 glutamate dehydrogenase (NADP(+))~PFAM: Glu/Leu/Phe/Val dehydrogenase %3B Glu/Leu/Phe/Val dehydrogenase dimerisation region~PRIAM: Glutamate dehydrogenase (NADP(+))~SPTR: C0W243 Glutamate dehydrogenase~PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase%3B Glu/Leu/Phe/Val dehydrogenase%2C dimerisation domain gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0202 Arch_0203 Arch_0203 Arch_0203 244508 246778 + LPXTG-motif cell wall anchor domain protein COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase~InterPro IPR004843:IPR008334:IPR019931:IPR006179~KEGG: cjk:jk1044 putative 5'-nucleotidase family protein~PFAM: 5'-Nucleotidase domain protein%3B metallophosphoesterase~SPTR: Q4JVE9 Putative 5'-nucleotidase family protein~TIGRFAM: LPXTG-motif cell wall anchor domain protein~PFAM: Calcineurin-like phosphoesterase%3B 5'-nucleotidase%2C C-terminal domain~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0203 Arch_0204 Arch_0204 Arch_0204 246866 247252 + conserved hypothetical protein KEGG: bcv:Bcav_3525 hypothetical protein~SPTR: C5C2S3 Putative uncharacterized protein gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0204 Arch_0205 Arch_0205 Arch_0205 247385 247621 - conserved hypothetical protein KEGG: kra:Krad_4039 hypothetical protein~SPTR: D0WLU3 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3073) gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0205 Arch_0206 Arch_0206 Arch_0206 247979 248170 + DNA binding domain protein%2C excisionase family InterPro IPR000551:IPR010093:IPR009061~KEGG: jde:Jden_2349 DNA binding domain protein%2C excisionase family~PFAM: regulatory protein MerR~SPTR: C7R2J2 DNA binding domain protein%2C excisionase family~TIGRFAM: DNA binding domain protein%2C excisionase family~PFAM: MerR family regulatory protein~TIGRFAM: DNA binding domain%2C excisionase family gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0206 Arch_0207 Arch_0207 Arch_0207 248266 248616 - hypothetical protein KEGG: bcv:Bcav_3513 hypothetical protein~SPTR: D0WLU4 Putative membrane protein~PFAM: Protein of unknown function (DUF3618) gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0207 Arch_0208 Arch_0208 Arch_0208 248613 249056 - protein of unknown function DUF1469 InterPro IPR009937~KEGG: bcv:Bcav_3512 protein of unknown function DUF1469~PFAM: protein of unknown function DUF1469~SPTR: C0VYT0 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF1469) gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0208 Arch_0209 Arch_0209 Arch_0209 249172 251025 - virulence factor MVIN family protein COGs: COG0728 membrane protein putative virulence factor~InterPro IPR004268~KEGG: bcv:Bcav_4210 integral membrane protein MviN~PFAM: virulence factor MVIN family protein~SPTR: D0WQR9 Integral membrane protein MviN~PFAM: MviN-like protein~TIGRFAM: integral membrane protein MviN gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0209 Arch_0210 Arch_0210 Arch_0210 251932 253557 + MscS Mechanosensitive ion channel COGs: COG0668 Small-conductance mechanosensitive channel~InterPro IPR006685:IPR010920:IPR018062~KEGG: cmi:CMM_1076 putative small-conductance mechanosensitive channel~PFAM: MscS Mechanosensitive ion channel~SPTR: D0WM12 Mechanosensitive ion channel family protein~PFAM: Mechanosensitive ion channel gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0210 Arch_0211 Arch_0211 Arch_0211 253558 254001 + methionine-R-sulfoxide reductase COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase~InterPro IPR002579:IPR011057~KEGG: bcv:Bcav_3481 methionine-R-sulfoxide reductase~PFAM: Methionine sulfoxide reductase B~PRIAM: Peptide-methionine (R)-S-oxide reductase~SPTR: D1BE41 Methionine-R-sulfoxide reductase~TIGRFAM: methionine-R-sulfoxide reductase~PFAM: SelR domain~TIGRFAM: methionine-R-sulfoxide reductase gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0211 Arch_0212 Arch_0212 Arch_0212 254001 254771 + Endonuclease/exonuclease/phosphatase COGs: COG3568 Metal-dependent hydrolase~InterPro IPR005135~KEGG: mkm:Mkms_0980 endonuclease/exonuclease/phosphatase~PFAM: Endonuclease/exonuclease/phosphatase~SPTR: Q1BDF7 Endonuclease/exonuclease/phosphatase~PFAM: Endonuclease/Exonuclease/phosphatase family gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0212 Arch_0213 Arch_0213 Arch_0213 254783 255646 + protein of unknown function DUF6 transmembrane COGs: COG5006 permease DMT superfamily protein~InterPro IPR000620~KEGG: bcv:Bcav_3478 protein of unknown function DUF6 transmembrane~PFAM: protein of unknown function DUF6 transmembrane~SPTR: C0W5Q8 Integral membrane protein~PFAM: EamA-like transporter family gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0213 Arch_0214 Arch_0214 Arch_0214 256162 256761 + conserved hypothetical protein KEGG: bcv:Bcav_3430 hypothetical protein~SPTR: D0WM32 Putative uncharacterized protein gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0214 Arch_0215 Arch_0215 Arch_0215 257240 258331 + phosphate ABC transporter%2C periplasmic phosphate-binding protein COGs: COG0226 ABC-type phosphate transport system periplasmic component~InterPro IPR006059:IPR005673~KEGG: jde:Jden_2082 phosphate ABC transporter%2C periplasmic phosphate-binding protein~PFAM: extracellular solute-binding protein family 1~SPTR: D1BD79 Phosphate-binding protein~TIGRFAM: phosphate ABC transporter%2C periplasmic phosphate-binding protein~TIGRFAM: phosphate ABC transporter%2C phosphate-binding protein gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0215 Arch_0216 Arch_0216 Arch_0216 258343 259242 + phosphate ABC transporter%2C inner membrane subunit PstC COGs: COG0573 ABC-type phosphate transport system permease component~InterPro IPR000515:IPR011864~KEGG: bcv:Bcav_3425 phosphate ABC transporter%2C inner membrane subunit PstC~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: D1BD78 Phosphate ABC transporter membrane protein~TIGRFAM: phosphate ABC transporter%2C inner membrane subunit PstC~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: phosphate ABC transporter%2C permease protein PstC gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0216 Arch_0217 Arch_0217 Arch_0217 259239 260156 + phosphate ABC transporter%2C inner membrane subunit PstA COGs: COG0581 ABC-type phosphate transport system permease component~InterPro IPR000515:IPR005672~KEGG: bcv:Bcav_3424 phosphate ABC transporter%2C inner membrane subunit PstA~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C5C241 Phosphate ABC transporter%2C inner membrane subunit PstA~TIGRFAM: phosphate ABC transporter%2C inner membrane subunit PstA~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: phosphate ABC transporter%2C permease protein PstA gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0217 Arch_0218 Arch_0218 Arch_0218 260216 261073 + phosphate ABC transporter%2C ATPase subunit COGs: COG1117 ABC-type phosphate transport system ATPase component~InterProIPR003593:IPR003439:IPR015850:IPR005670:IPR 017871~KEGG: jde:Jden_2079 phosphate ABC transporter%2C ATPase subunit~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C7R0Z3 Phosphate ABC transporter%2C ATPase subunit~TIGRFAM: phosphate ABC transporter%2C ATPase subunit~PFAM: ABC transporter~TIGRFAM: phosphate ABC transporter%2C ATP-binding protein gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0218 Arch_0219 Arch_0219 Arch_0219 261175 262188 - phosphate transporter COGs: COG0306 Phosphate/sulphate permease~InterPro IPR001204~KEGG: bcv:Bcav_3421 phosphate transporter~PFAM: phosphate transporter~SPTR: C0VYU7 PiT family inorganic phosphate transporter~PFAM: Phosphate transporter family gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0219 Arch_0220 Arch_0220 Arch_0220 262188 262814 - Putitive phosphate transport regulator COGs: COG1392 Phosphate transport regulator (distant homolog of PhoU)~InterPro IPR018445~KEGG: xce:Xcel_0299 protein of unknown function DUF47~PFAM: Putitive phosphate transport regulator~SPTR: D0WM40 Putative Pit accessory protein~PFAM: Protein of unknown function DUF47~TIGRFAM: conserved hypothetical protein TIGR00153 gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0220 Arch_0221 Arch_0221 Arch_0221 263074 264516 + amino acid carrier protein COGs: COG1115 Na+/alanine symporter~InterPro IPR001463~KEGG: jde:Jden_1694 amino acid carrier protein~PFAM: sodium:alanine symporter~SPTR: C0U4P6 Amino acid carrier protein~TIGRFAM: amino acid carrier protein~PFAM: Sodium:alanine symporter family~TIGRFAM: amino acid carrier protein gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0221 Arch_0222 Arch_0222 Arch_0222 264616 265476 - conserved hypothetical protein KEGG: bfa:Bfae_23020 hypothetical protein~SPTR: C2KMY9 Putative uncharacterized protein gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0222 Arch_0223 Arch_0223 Arch_0223 266121 266957 + conserved hypothetical protein KEGG: bcv:Bcav_3418 hypothetical protein~SPTR: C5C235 Putative uncharacterized protein gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0223 Arch_0224 Arch_0224 Arch_0224 266971 267564 + Domain of unknown function DUF1794 InterPro IPR014878~KEGG: bcv:Bcav_3416 domain of unknown function DUF1794~PFAM: Domain of unknown function DUF1794~SPTR: D0WM44 Putative uncharacterized protein~PFAM: Domain of unknown function (DUF1794) gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0224 Arch_0225 Arch_0225 Arch_0225 267561 268661 + folate-binding protein YgfZ COGs: COG0354 aminomethyltransferase related to GcvT~InterPro IPR006222:IPR017703~KEGG: xce:Xcel_3028 folate-binding protein YgfZ~PFAM: glycine cleavage T protein (aminomethyl transferase)~SPTR: C0W5Y9 Glycine cleavage T protein (Aminomethyl transferase)~TIGRFAM: folate-binding protein YgfZ~PFAM: Aminomethyltransferase folate-binding domain%3B Glycine cleavage T-protein C-terminal barrel domain~TIGRFAM: folate-binding protein YgfZ gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0225 Arch_0226 Arch_0226 Arch_0226 268661 269125 + D-tyrosyl-tRNA(Tyr) deacylase COGs: COG1490 D-Tyr-tRNAtyr deacylase~InterPro IPR003732~KEGG: xce:Xcel_3022 D-tyrosyl-tRNA(Tyr) deacylase~PFAM: D-tyrosyl-tRNA(Tyr) deacylase~SPTR: D0WM48 D-tyrosyl-tRNA(Tyr) deacylase~TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase~PFAM: D-Tyr-tRNA(Tyr) deacylase~TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0226 Arch_0227 Arch_0227 Arch_0227 269213 271834 + ATPase AAA-2 domain protein COGs: COG0542 ATPase with chaperone activity ATP-binding subunit~InterProIPR003593:IPR004176:IPR003959:IPR001943:IPR 013093:IPR019489:IPR001270:IPR018368~KEGG: xce:Xcel_0363 ATPase AAA-2 domain protein~PFAM: ATPase AAA-2 domain protein%3B Clp domain protein%3B AAA ATPase central domain protein%3B UvrB/UvrC protein%3B Clp ATPase-like~SMART: AAA ATPase~SPTR: D0WM50 Negative regulator of genetic competence ClpC/MecB~PFAM: AAA domain (Cdc48 subfamily)%3B Clp amino terminal domain%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B ATPase family associated with various cellular activities (AAA)%3B UvrB/uvrC motif gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0227 Arch_0228 Arch_0228 Arch_0228 272469 274094 + LPXTG-motif cell wall anchor domain protein InterPro IPR019931~KEGG: cdi:DIP0235 putative fimbrial subunit~SPTR: Q6NK05 Putative fimbrial subunit~TIGRFAM: LPXTG-motif cell wall anchor domain protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0228 Arch_0229 Arch_0229 Arch_0229 274291 275289 + sortase family protein COGs: COG3764 Sortase (surface protein transpeptidase)~InterPro IPR005754~KEGG: cjk:jk1700 putative fimbrial associated sortase-like protein~PFAM: peptidase C60 sortase A and B~SPTR: Q4JTI0 Putative fimbrial associated sortase-like protein~TIGRFAM: sortase family protein~PFAM: Sortase family~TIGRFAM: LPXTG-site transpeptidase (sortase) family protein gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0229 Arch_0230 Arch_0230 Arch_0230 275286 276005 + hypothetical protein KEGG: cdi:DIP2223 potential surface-anchored protein~SPTR: C0WGP1 Surface anchored protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0230 Arch_0231 Arch_0231 Arch_0231 276007 280086 + LPXTG-motif cell wall anchor domain protein InterPro IPR001899:IPR019931~KEGG: cjk:jk1702 putative surface-anchored protein~SPTR: C2BJ20 Possible surface-anchored protein~TIGRFAM: LPXTG-motif cell wall anchor domain protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0231 Arch_0232 Arch_0232 Arch_0232 280428 281627 + transposase IS116/IS110/IS902 family protein InterPro IPR002525:IPR003346~KEGG: mlu:Mlut_12160 transposase~PFAM: transposase IS116/IS110/IS902 family protein%3B transposase IS111A/IS1328/IS1533~SPTR: C0W956 Transposase%2C IS111A/IS1328/IS1533 (Fragment)~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0232 Arch_0233 Arch_0233 Arch_0233 282164 282832 + hypothetical protein KEGG: amu:Amuc_0584 outer membrane autotransporter barrel domain protein~SPTR: B6B0M8 Putative uncharacterized protein gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0233 Arch_0234 Arch_0234 Arch_0234 282829 283062 + hypothetical protein KEGG: rsh:Rsph17029_0016 hypothetical protein~SPTR: A0Z0M5 Putative uncharacterized protein gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0234 Arch_0235 Arch_0235 Arch_0235 283153 283581 - pseudogene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0235 Arch_0236 Arch_0236 Arch_0236 283582 283701 - pseudogene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0236 Arch_0237 Arch_0237 Arch_0237 283728 284100 + pseudogene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0237 Arch_0238 Arch_0238 Arch_0238 284311 285642 - Na+/H+ antiporter NhaC COGs: COG2056 permease~InterPro IPR018461~KEGG: cdi:DIP1661 hypothetical protein~PFAM: Na+/H+ antiporter NhaC-like~SPTR: C0W230 NhaC family sodium:proton (Na+:H+) antiporter~PFAM: Na+/H+ antiporter family gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0238 Arch_0239 Arch_0239 Arch_0239 285898 288645 + LPXTG-motif cell wall anchor domain protein COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase~InterPro IPR004843:IPR008334:IPR019931:IPR006179~KEGG: cgt:cgR_0412 hypothetical protein~PFAM: 5'-Nucleotidase domain protein%3B metallophosphoesterase~SPTR: D0WQ91 5-nucleotidase~TIGRFAM: LPXTG-motif cell wall anchor domain protein~PFAM: 5'-nucleotidase%2C C-terminal domain~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0239 Arch_0240 Arch_0240 Arch_0240 288894 291632 + pyruvate%2C phosphate dikinase COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase~InterProIPR002192:IPR008279:IPR000121:IPR013815:IPR 013816:IPR015813:IPR010121:IPR018274~KEGG: tfu:Tfu_0863 pyruvate phosphate dikinase~PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding%3B PEP-utilising protein mobile region%3B PEP-utilizing protein~PRIAM: Pyruvate%2C phosphate dikinase~SPTR: D0WM96 Pyruvate%2C phosphate dikinase~TIGRFAM: pyruvate%2C phosphate dikinase~PFAM: PEP-utilising enzyme%2C TIM barrel domain%3B PEP-utilising enzyme%2C mobile domain%3B Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain~TIGRFAM: pyruvate%2C phosphate dikinase gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0240 Arch_0241 Arch_0241 Arch_0241 291821 293614 + acyltransferase 3 COGs: COG1835 acyltransferase~InterPro IPR002656:IPR013830~KEGG: lxx:Lxx20050 lipopolysaccharide modification acyltransferase~PFAM: acyltransferase 3~SPTR: C0W6X9 Lipopolysaccharide modification acyltransferase~PFAM: Acyltransferase family gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0241 Arch_0242 Arch_0242 Arch_0242 293724 295010 + hypothetical protein KEGG: xce:Xcel_3007 hypothetical protein~SPTR: A7BBM1 Putative uncharacterized protein gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0242 Arch_0243 Arch_0243 Arch_0243 295007 296035 - alpha/beta hydrolase fold protein COGs: COG2267 Lysophospholipase~InterPro IPR000073~KEGG: jde:Jden_2115 hypothetical protein~PFAM: alpha/beta hydrolase fold~SPTR: D0WMB4 Hydrolase%2C alpha/beta fold family domain protein~PFAM: alpha/beta hydrolase fold gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0243 Arch_0244 Arch_0244 Arch_0244 296094 298475 - PKD domain containing protein InterProIPR000601:IPR001087:IPR013831:IPR002035:IPR 013830~KEGG: pac:PPA1665 hypothetical protein~PFAM: PKD domain containing protein%3B lipolytic protein G-D-S-L family~SMART: PKD domain containing protein~SPTR: C0VY99 Putative uncharacterized protein~PFAM: GDSL-like Lipase/Acylhydrolase%3B PKD domain gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0244 Arch_0245 Arch_0245 Arch_0245 298479 298949 - hypothetical protein KEGG: stp:Strop_4344 protein kinase~SPTR: Q5ZP17 CcV1 protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0245 Arch_0246 Arch_0246 Arch_0246 299155 300684 + NLP/P60 protein COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein)~InterPro IPR000064~KEGG: blt:Balat_0454 cell wall-associated hydrolase~PFAM: NLP/P60 protein~SPTR: D0WMB9 Putative NLP/P60 family protein~PFAM: NlpC/P60 family gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0246 Arch_0247 Arch_0247 Arch_0247 301016 301519 - Inorganic diphosphatase COGs: COG0221 Inorganic pyrophosphatase~InterPro IPR008162~KEGG: bcv:Bcav_0696 inorganic diphosphatase~PFAM: Inorganic pyrophosphatase~PRIAM: Inorganic diphosphatase~SPTR: D0WMC4 Inorganic diphosphatase~PFAM: Inorganic pyrophosphatase gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0247 Arch_0248 Arch_0248 Arch_0248 301605 302966 + D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)~InterPro IPR000667:IPR012338~KEGG: xce:Xcel_2996 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase~PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C~SPTR: D0WMC5 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase~TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase~PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family~TIGRFAM: D-alanyl-D-alanine carboxypeptidase%2C serine-type%2C PBP4 family gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0248 Arch_0249 Arch_0249 Arch_0249 303028 303894 + conserved hypothetical protein COGs: COG5282 conserved hypothetical protein~InterPro IPR018766~KEGG: rsa:RSal33209_3221 putative cytoplasmic protein~PFAM: Protein of unknown function DUF2342~SPTR: D0WMC6 Putative uncharacterized protein~TIGRFAM: conserved hypothetical protein~PFAM: Uncharacterised conserved protein (DUF2342)~TIGRFAM: conserved hypothetical protein gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0249 Arch_0250 Arch_0250 Arch_0250 303891 304976 + tRNA(Ile)-lysidine synthetase COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control~InterPro IPR011063:IPR014729:IPR012795~KEGG: bcv:Bcav_0700 tRNA(Ile)-lysidine synthetase~PFAM: PP-loop domain protein~SPTR: D0WMC7 tRNA(Ile)-lysidine synthase~TIGRFAM: tRNA(Ile)-lysidine synthetase~PFAM: PP-loop family~TIGRFAM: tRNA(Ile)-lysidine synthetase%2C N-terminal domain gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0250 Arch_0251 Arch_0251 Arch_0251 304973 307216 + ATP-dependent metalloprotease FtsH COGs: COG0465 ATP-dependent Zn protease~InterProIPR003593:IPR011546:IPR003959:IPR000642:IPR 005936:IPR003960~KEGG: cms:CMS_0099 cell division protein FtsH-like protein~PFAM: peptidase M41%3B AAA ATPase central domain protein%3B peptidase M41 FtsH extracellular~PRIAM: Microtubule-severing ATPase~SMART: AAA ATPase~SPTR: D0WMC9 Putative cell division protein~TIGRFAM: ATP-dependent metalloprotease FtsH~PFAM: Peptidase family M41%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent metalloprotease FtsH gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0251 Arch_0252 Arch_0252 Arch_0252 307209 307802 + GTP cyclohydrolase I COGs: COG0302 GTP cyclohydrolase I~InterPro IPR020602:IPR001474:IPR018234~KEGG: art:Arth_0152 GTP cyclohydrolase~PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase~PRIAM: GTP cyclohydrolase I~SPTR: C0W610 GTP cyclohydrolase I~TIGRFAM: GTP cyclohydrolase I~PFAM: GTP cyclohydrolase I~TIGRFAM: GTP cyclohydrolase I gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0252 Arch_0253 Arch_0253 Arch_0253 307813 308625 + dihydropteroate synthase COGs: COG0294 Dihydropteroate synthase~InterPro IPR000489:IPR006390:IPR011005~KEGG: krh:KRH_19260 dihydropteroate synthase~PFAM: dihydropteroate synthase DHPS~PRIAM: Dihydropteroate synthase~SPTR: D0WMD1 Dihydropteroate synthase~TIGRFAM: dihydropteroate synthase~PFAM: Pterin binding enzyme~TIGRFAM: dihydropteroate synthase gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0253 Arch_0254 Arch_0254 Arch_0254 308635 309510 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase~InterPro IPR006157:IPR000550:IPR006156~KEGG: blo:BL1685 SulD~PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK%3B dihydroneopterin aldolase~SPTR: D0WMD2 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase~TIGRFAM:2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase%3B dihydroneopterin aldolase~PFAM: Dihydroneopterin aldolase%3B 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)~TIGRFAM: dihydroneopterin aldolase%3B FolB domain%3B 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0254 Arch_0255 Arch_0255 Arch_0255 309500 309982 + conserved hypothetical protein KEGG: xce:Xcel_2983 hypothetical protein~SPTR: D1BZ92 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3180) gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0255 Arch_0256 Arch_0256 Arch_0256 310127 310615 + membrane-flanked domain protein COGs: COG3402 conserved hypothetical protein~InterPro IPR005182~KEGG: rsa:RSal33209_3209 permease~PFAM: membrane-flanked domain~SPTR: A9WUQ5 Permease~PFAM: Bacterial membrane flanked domain gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0256 Arch_0257 Arch_0257 Arch_0257 310615 312165 + membrane-flanked domain protein COGs: COG3428 membrane protein~InterPro IPR005182~KEGG: bcv:Bcav_0708 membrane-flanked domain protein~PFAM: membrane-flanked domain~SPTR: C5BYL1 Membrane-flanked domain protein~PFAM: Bacterial membrane flanked domain gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0257 Arch_0258 Arch_0258 Arch_0258 312149 313036 + Putative oxidoreductase/dehydrogenase%2C Rossmann-like domain protein COGs: COG5495 conserved hypothetical protein~InterPro IPR019665:IPR018931:IPR016040~KEGG: bcv:Bcav_0716 pantoate/beta-alanine ligase~PFAM: Putative oxidoreductase/dehydrogenase%2C Rossmann-like domain%3B Domain of unknown function DUF2520~SPTR: C5BYL9 Pantoate/beta-alanine ligase~PFAM: Domain of unknown function (DUF2520)%3B Rossmann-like domain gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0258 Arch_0259 Arch_0259 Arch_0259 313077 313904 + pantoate/beta-alanine ligase COGs: COG0414 Panthothenate synthetase~InterPro IPR003721:IPR014729:IPR004821~KEGG: ace:Acel_0211 pantothenate synthetase~PFAM: Pantoate-beta-alanine ligase~SPTR: D0WLV2 Pantoate--beta-alanine ligase~TIGRFAM: pantoate/beta-alanine ligase%3B cytidyltransferase-related domain protein~PFAM: Pantoate-beta-alanine ligase~TIGRFAM: pantoate--beta-alanine ligase%3B cytidyltransferase-related domain gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0259 Arch_0260 Arch_0260 Arch_0260 313897 314352 + aspartate 1-decarboxylase COGs: COG0853 Aspartate 1-decarboxylase~InterPro IPR003190:IPR009010~KEGG: jde:Jden_2095 aspartate 1-decarboxylase~PFAM: aspartate decarboxylase~PRIAM: Aspartate 1-decarboxylase~SPTR: D0WLV3 Aspartate 1-decarboxylase~TIGRFAM: aspartate 1-decarboxylase~PFAM: Aspartate decarboxylase~TIGRFAM: L-aspartate-alpha-decarboxylase gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0260 Arch_0261 Arch_0261 Arch_0261 314416 316005 + lysyl-tRNA synthetase COGs: COG1190 Lysyl-tRNA synthetase (class II)~InterProIPR004365:IPR004364:IPR012340:IPR006195:IPR 002313:IPR016027:IPR018149~KEGG: jde:Jden_2092 lysyl-tRNA synthetase~PFAM: tRNA synthetase class II (D K and N)%3B nucleic acid binding OB-fold tRNA/helicase-type~PRIAM: Lysine--tRNA ligase~SPTR: D0WLW0 Lysine--tRNA ligase~TIGRFAM: lysyl-tRNA synthetase~PFAM: tRNA synthetases class II (D%2C K and N)%3B OB-fold nucleic acid binding domain~TIGRFAM: lysyl-tRNA synthetase%2C eukaryotic and non-spirochete bacterial gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0261 Arch_0262 Arch_0262 Arch_0262 316580 318103 - glycerol kinase COGs: COG0554 Glycerol kinase~InterPro IPR018484:IPR018485:IPR005999:IPR018483~KEGG: pac:PPA2304 glycerol kinase 2~PFAM: Carbohydrate kinase%2C FGGY-like~SPTR: C0VYK7 Glycerol kinase 2~TIGRFAM: glycerol kinase~PFAM: FGGY family of carbohydrate kinases%2C N-terminal domain%3B FGGY family of carbohydrate kinases%2C C-terminal domain~TIGRFAM: glycerol kinase gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0262 Arch_0263 Arch_0263 Arch_0263 318173 318919 - major intrinsic protein COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family)~InterPro IPR000425~KEGG: jde:Jden_0486 major intrinsic protein~PFAM: major intrinsic protein~SPTR: C2KN37 MIP family major intrinsic protein channel protein~PFAM: Major intrinsic protein~TIGRFAM: MIP family channel proteins gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0263 Arch_0264 Arch_0264 Arch_0264 319140 319802 - ATP-binding protein COGs: COG0572 Uridine kinase~KEGG: bcv:Bcav_3297 ATP-binding protein~SPTR: C5C1D0 ATP-binding protein gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0264 Arch_0265 Arch_0265 Arch_0265 319881 321140 - glycerol-3-phosphate dehydrogenase%2C anaerobic%2C C subunit COGs: COG0247 Fe-S oxidoreductase~InterProIPR001450:IPR004017:IPR012285:IPR017896:IPR 017753:IPR009051:IPR017900~KEGG: pac:PPA2248 sn-glycerol-3-phosphate dehydrogenase subunit C~PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B protein of unknown function DUF224 cysteine-rich region domain protein~SPTR: C2BV29 sn-glycerol-3-phosphate dehydrogenase subunit C~TIGRFAM: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C C subunit~PFAM: Cysteine-rich domain~TIGRFAM: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C C subunit gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0265 Arch_0266 Arch_0266 Arch_0266 321137 322336 - glycerol-3-phosphate dehydrogenase%2C anaerobic%2C B subunit COGs: COG3075 Anaerobic glycerol-3-phosphate dehydrogenase~InterPro IPR003953:IPR009158~KEGG: pac:PPA2249 anaerobic glycerol-3-phosphate dehydrogenase subunit B~PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein~PRIAM: Glycerol-3-phosphate dehydrogenase~SPTR: D0YR90 Glycerol-3-phosphate dehydrogenase%2C anaerobic%2C B subunit~TIGRFAM: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C B subunit~PFAM: FAD binding domain~TIGRFAM: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C B subunit gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0266 Arch_0267 Arch_0267 Arch_0267 322333 324030 - glycerol-3-phosphate dehydrogenase%2C anaerobic%2C A subunit COGs: COG0578 Glycerol-3-phosphate dehydrogenase~InterPro IPR006076:IPR007419:IPR017752:IPR000447~KEGG: pac:PPA2250 anaerobic glycerol-3-phosphate dehydrogenase subunit A~PFAM: FAD dependent oxidoreductase%3B BFD domain protein [2Fe-2S]-binding domain protein~SPTR: D0YR89 Glycerol-3-phosphate dehydrogenase%2C anaerobic%2C A subunit~TIGRFAM: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C A subunit~PFAM: BFD-like [2Fe-2S] binding domain%3B FAD dependent oxidoreductase~TIGRFAM: glycerol-3-phosphate dehydrogenase%2C anaerobic%2C A subunit gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0267 Arch_0268 Arch_0268 Arch_0268 324215 325165 + transcriptional regulator%2C DeoR family COGs: COG2390 Transcriptional regulator contains sigma factor-related N-terminal domain~InterPro IPR007324:IPR009057~KEGG: bcv:Bcav_3288 transcriptional regulator%2C DeoR family~PFAM: putative sugar-binding domain protein~SPTR: D0YR88 Sugar-binding family transcriptional regulator~PFAM: Sigma-70%2C region 4%3B Putative sugar-binding domain gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0268 Arch_0269 Arch_0269 Arch_0269 325168 326058 - HhH-GPD family protein COGs: COG1194 A/G-specific DNA glycosylase~InterProIPR003265:IPR003583:IPR003651:IPR011257:IPR 004036~KEGG: bcv:Bcav_3282 HhH-GPD family protein~PFAM: HhH-GPD family protein%3B iron-sulfur cluster loop~SMART: HhH-GPD family protein%3B Helix-hairpin-helix DNA-binding class 1~SPTR: D0WM02 A/G-specific adenine glycosylase~PFAM: HhH-GPD superfamily base excision DNA repair protein%3B Helix-hairpin-helix motif~TIGRFAM: A/G-specific adenine glycosylase gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0269 Arch_0270 Arch_0270 Arch_0270 326055 326597 - transcriptional regulator%2C TetR family InterPro IPR001647:IPR012287:IPR009057~KEGG: cur:cur_0019 TetR family transcriptional regulator~PFAM: regulatory protein TetR~SPTR: C5VFG3 Transcriptional regulator%2C TetR family~PFAM: Bacterial regulatory proteins%2C tetR family gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0270 Arch_0271 Arch_0271 Arch_0271 326584 328104 - major facilitator superfamily MFS_1 COGs: COG2814 Arabinose efflux permease~InterPro IPR011701:IPR016196~KEGG: cgt:cgR_2515 hypothetical protein~PFAM: major facilitator superfamily MFS_1~SPTR: A4QH10 Putative uncharacterized protein~PFAM: Major Facilitator Superfamily gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0271 Arch_0272 Arch_0272 Arch_0272 328135 329454 - major facilitator superfamily MFS_1 InterPro IPR011701:IPR016196:IPR005829~KEGG: smt:Smal_1070 major facilitator superfamily MFS_1~PFAM: major facilitator superfamily MFS_1~SPTR: D0XPS3 Major facilitator superfamily MFS_1~PFAM: Sugar (and other) transporter%3B Major Facilitator Superfamily gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0272 Arch_0273 Arch_0273 Arch_0273 329631 330779 + conserved hypothetical protein COGs: COG4637 ATPase~KEGG: aav:Aave_2264 hypothetical protein~SPTR: B5W7M4 SMC domain protein gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0273 Arch_0274 Arch_0274 Arch_0274 330783 331367 + hypothetical protein KEGG: ajs:Ajs_4079 hypothetical protein~SPTR: B5W7M3 Putative uncharacterized protein gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0274 Arch_0275 Arch_0275 Arch_0275 331564 332508 + hypothetical protein KEGG: nca:Noca_0468 hypothetical protein~SPTR: D0WMD9 Putative uncharacterized protein (Fragment) gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0275 Arch_0276 Arch_0276 Arch_0276 332564 333940 - DNA repair protein RadA COGs: COG1066 ATP-dependent serine protease~InterPro IPR003593:IPR004504:IPR020568~KEGG: bcv:Bcav_3279 DNA repair protein RadA~SMART: AAA ATPase~SPTR: C0W0Q9 DNA repair protein radA~TIGRFAM: DNA repair protein RadA~PFAM: KaiC%3B Lon protease (S16) C-terminal proteolytic domain~TIGRFAM: DNA repair protein RadA gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0276 Arch_0277 Arch_0277 Arch_0277 333978 334646 - TrkA-N domain protein COGs: COG0569 K+ transport systems NAD-binding component~InterPro IPR003148:IPR006037:IPR016040~KEGG: bcv:Bcav_3270 TrkA-N domain protein~PFAM: TrkA-N domain protein%3B TrkA-C domain protein~SPTR: D0WME1 Trk-type K+ transport system%2C NAD-binding component~PFAM: TrkA-N domain%3B TrkA-C domain gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0277 Arch_0278 Arch_0278 Arch_0278 334724 336169 - H(+)-transporting two-sector ATPase COGs: COG0168 Trk-type K+ transport systems membrane components~InterPro IPR003445~KEGG: bcv:Bcav_3269 H(+)-transporting two-sector ATPase~PFAM: cation transporter~PRIAM: H(+)-transporting two-sector ATPase~SPTR: C5C1A2 H(+)-transporting two-sector ATPase~PFAM: Cation transport protein gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0278 Arch_0279 Arch_0279 Arch_0279 336451 336666 + DNA binding domain protein%2C excisionase family InterPro IPR010093:IPR009061:IPR000843~KEGG: bcv:Bcav_3263 excision promoter%2C Xis~SPTR: D0WME4 Putative excisionase~TIGRFAM: DNA binding domain protein%2C excisionase family~TIGRFAM: DNA binding domain%2C excisionase family gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0279 Arch_0280 Arch_0280 Arch_0280 337136 337612 + transcriptional regulator%2C MarR family InterPro IPR000835:IPR011991~KEGG: bcv:Bcav_3256 transcriptional regulator%2C MarR family~PFAM: regulatory protein MarR~SMART: regulatory protein MarR~SPTR: D1BBA8 Transcriptional regulator%2C MarR family~PFAM: MarR family gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0280 Arch_0281 Arch_0281 Arch_0281 337662 338324 + Phosphoglycerate mutase COGs: COG0406 Fructose-2 6-bisphosphatase~InterPro IPR013078~KEGG: tcu:Tcur_4432 phosphoglycerate mutase~PFAM: Phosphoglycerate mutase~SPTR: D0WME6 Phosphoglycerate mutase family protein~PFAM: Phosphoglycerate mutase family gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0281 Arch_0282 Arch_0282 Arch_0282 338528 338923 - conserved hypothetical protein KEGG: xce:Xcel_0448 hypothetical protein~SPTR: D0WMF2 Putative membrane protein gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0282 Arch_0283 Arch_0283 Arch_0283 338980 339858 - 1%2C4-dihydroxy-2-naphthoateoctaprenyltransferase COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase~InterPro IPR000537:IPR004657~KEGG: kra:Krad_0635 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase~PFAM: UbiA prenyltransferase~SPTR: A7BBS9 Putative uncharacterized protein~TIGRFAM: 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase~PFAM: UbiA prenyltransferase family~TIGRFAM: 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0283 Arch_0284 Arch_0284 Arch_0284 339845 340984 - AMP-dependent synthetase and ligase COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II~InterPro IPR000873~KEGG: bcv:Bcav_3247 O-succinylbenzoic acid--CoA ligase~PFAM: AMP-dependent synthetase and ligase~SPTR: D0WMF4 O-succinylbenzoate--CoA ligase~PFAM: AMP-binding enzyme gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0284 Arch_0285 Arch_0285 Arch_0285 340977 341966 - naphthoate synthase COGs: COG0447 Dihydroxynaphthoic acid synthase~InterPro IPR001753:IPR010198:IPR018376~KEGG: xce:Xcel_0455 naphthoate synthase~PFAM: Enoyl-CoA hydratase/isomerase~SPTR: C0W0R8 Naphthoate synthase~TIGRFAM: naphthoate synthase~PFAM: Enoyl-CoA hydratase/isomerase family~TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase) gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0285 Arch_0286 Arch_0286 Arch_0286 341971 342588 - Methyltransferase type 11 InterPro IPR013216~KEGG: bcv:Bcav_2129 methyltransferase type 12~PFAM: Methyltransferase type 11~SPTR: C4DS37 Methyltransferase family protein~PFAM: Thiopurine S-methyltransferase (TPMT) gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0286 Arch_0287 Arch_0287 Arch_0287 342613 343596 + Mandelate racemase/muconate lactonizing protein COGs: COG4948 L-alanine-DL-glutamate epimerase~InterPro IPR013342~KEGG: nca:Noca_0509 O-succinylbenzoate synthase~PFAM: Mandelate racemase/muconate lactonizing protein~SPTR: A1SE16 Mandelate racemase/muconate lactonizing enzyme%2C C-terminal domain protein~PFAM: Mandelate racemase / muconate lactonizing enzyme%2C C-terminal domain~TIGRFAM: o-succinylbenzoic acid (OSB) synthetase gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0287 Arch_0288 Arch_0288 Arch_0288 343593 345215 + 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase~InterPro IPR012001~KEGG: pac:PPA0903 menaquinone biosynthesis protein~PFAM: thiamine pyrophosphate protein TPP binding domain protein~PRIAM:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex ene-1-carboxylic-acidsynthase~SPTR: Q6A9B0 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase~PFAM: Thiamine pyrophosphate enzyme%2C N-terminal TPP binding domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain~TIGRFAM: 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0288 Arch_0289 Arch_0289 Arch_0289 345297 346964 + peptidase S1 and S6 chymotrypsin/Hap COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain~InterPro IPR001478:IPR001254:IPR009003:IPR001940~KEGG: bcv:Bcav_3234 2-alkenal reductase~PFAM: peptidase S1 and S6 chymotrypsin/Hap%3B PDZ/DHR/GLGF domain protein~SMART: PDZ/DHR/GLGF domain protein~SPTR: C5C0T2 2-alkenal reductase~PFAM: Trypsin%3B PDZ domain (Also known as DHR or GLGF) gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0289 Arch_0290 Arch_0290 Arch_0290 347139 348458 - isochorismate synthase COGs: COG1169 Isochorismate synthase~InterPro IPR015890:IPR005801:IPR004561~KEGG: bcv:Bcav_3233 isochorismate synthase~PFAM: Chorismate binding-like~SPTR: C5C0T1 Isochorismate synthase~TIGRFAM: isochorismate synthase~PFAM: chorismate binding enzyme~TIGRFAM: isochorismate synthases gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0290 Arch_0291 Arch_0291 Arch_0291 348497 349237 + ubiquinone/menaquinone biosynthesis methyltransferase COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis~InterPro IPR004033~KEGG: bcv:Bcav_3232 ubiquinone/menaquinone biosynthesis methyltransferase~PFAM: UbiE/COQ5 methyltransferase~SPTR: D1BBC6 2-octaprenyl-6-methoxy-1%2C4-benzoquinone methylase /demethylmenaquinone methyltransferase~TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase~PFAM: ubiE/COQ5 methyltransferase family~TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0291 Arch_0292 Arch_0292 Arch_0292 349422 350705 + geranylgeranyl reductase COGs: COG0644 Dehydrogenase (flavoprotein)~InterPro IPR006076:IPR011777:IPR003042~KEGG: bcv:Bcav_3230 geranylgeranyl reductase~PFAM: FAD dependent oxidoreductase~SPTR: D0WMG0 Putative monooxygenase%2C FAD-binding~TIGRFAM: geranylgeranyl reductase~manually curated~PFAM: FAD binding domain~TIGRFAM: geranylgeranyl reductase family gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0292 Arch_0293 Arch_0293 Arch_0293 350797 351156 + NADH-ubiquinone/plastoquinone oxidoreductase chain 3 COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A)~InterPro IPR000440~KEGG: bcv:Bcav_3229 NADH-ubiquinone/plastoquinone oxidoreductase chain 3~PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3~SPTR: D0WMG1 NADH dehydrogenase I%2C A subunit~PFAM: NADH-ubiquinone/plastoquinone oxidoreductase%2C chain 3 gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0293 Arch_0294 Arch_0294 Arch_0294 351160 351717 + NADH-quinone oxidoreductase%2C B subunit COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase~InterPro IPR006137:IPR006138~KEGG: sgr:SGR_2983 NADH dehydrogenase subunit B~PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit~PRIAM: NADH dehydrogenase (quinone)~SPTR: A7BBW8 Putative uncharacterized protein~TIGRFAM: NADH-quinone oxidoreductase%2C B subunit~PFAM: NADH ubiquinone oxidoreductase%2C 20 Kd subunit~TIGRFAM: NADH-quinone oxidoreductase%2C B subunit gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0294 Arch_0295 Arch_0295 Arch_0295 351714 352412 + NADH (or F420H2) dehydrogenase%2C subunit C COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit~InterPro IPR001268:IPR010218~KEGG: sco:SCO4564 NADH dehydrogenase subunit C~PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit~SPTR: D0WMG3 NADH dehydrogenase I%2C C subunit~TIGRFAM: NADH (or F420H2) dehydrogenase%2C subunit C~PFAM: Respiratory-chain NADH dehydrogenase%2C 30 Kd subunit~TIGRFAM: NADH (or F420H2) dehydrogenase%2C subunit C gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0295 Arch_0296 Arch_0296 Arch_0296 352412 353761 + NADH dehydrogenase I%2C D subunit COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7~InterPro IPR001135:IPR010219:IPR014029~KEGG: bcv:Bcav_3226 NADH dehydrogenase I%2C D subunit~PFAM: NADH-ubiquinone oxidoreductase chain 49kDa~PRIAM: NADH dehydrogenase (quinone)~SPTR: D0WMG4 NADH dehydrogenase%2C D subunit~TIGRFAM: NADH dehydrogenase I%2C D subunit~PFAM: Respiratory-chain NADH dehydrogenase%2C 49 Kd subunit~TIGRFAM: NADH dehydrogenase I%2C D subunit gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0296 Arch_0297 Arch_0297 Arch_0297 353761 354441 + NADH-quinone oxidoreductase%2C E subunit COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit~InterPro IPR002023:IPR005113:IPR012336~KEGG: xce:Xcel_0473 NADH-quinone oxidoreductase%2C E subunit~PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit~SPTR: D0WMG5 NADH dehydrogenase I%2C E subunit~TIGRFAM: NADH-quinone oxidoreductase%2C E subunit~PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit~TIGRFAM: NADH-quinone oxidoreductase%2C E subunit gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0297 Arch_0298 Arch_0298 Arch_0298 354438 355763 + NADH-quinone oxidoreductase%2C F subunit COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit~InterProIPR011538:IPR019554:IPR019575:IPR011537:IPR 001949~KEGG: bcv:Bcav_3224 NADH-quinone oxidoreductase%2C F subunit~PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit%3B Soluble ligand binding domain%3B NADH ubiquinone oxidoreductase%2C F subunit%2C iron sulphur binding~PRIAM: NADH dehydrogenase (quinone)~SPTR: D0WMG6 NADH oxidoreductase%2C F subunit~TIGRFAM: NADH-quinone oxidoreductase%2C F subunit~PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region%3B Respiratory-chain NADH dehydrogenase 51 Kd subunit%3B SLBB domain~TIGRFAM: NADH-quinone oxidoreductase%2C F subunit gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0298 Arch_0299 Arch_0299 Arch_0299 355776 358373 + NADH-quinone oxidoreductase%2C chain G COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)~InterProIPR001041:IPR019574:IPR006656:IPR010228:IPR 000283~KEGG: xce:Xcel_0475 NADH-quinone oxidoreductase%2C chain G~PFAM: NADH:ubiquinone oxidoreductase%2C subunit G%2C iron-sulphur binding%3B ferredoxin%3B molybdopterin oxidoreductase~SPTR: D0WMG7 NADH dehydrogenase%2C G subunit~TIGRFAM: NADH-quinone oxidoreductase%2C chain G~PFAM: 2Fe-2S iron-sulfur cluster binding domain%3B Molybdopterin oxidoreductase%3B NADH-ubiquinone oxidoreductase-G iron-sulfur binding region~TIGRFAM: NADH-quinone oxidoreductase%2C chain G gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0299 Arch_0300 Arch_0300 Arch_0300 358370 359704 + respiratory-chain NADH dehydrogenase subunit 1 COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H)~InterPro IPR001694:IPR018086~KEGG: bcv:Bcav_3222 NADH dehydrogenase (quinone)~PFAM: respiratory-chain NADH dehydrogenase subunit 1~SPTR: D0WMG8 NADH dehydrogenase I%2C H subunit~PFAM: NADH dehydrogenase gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0300 Arch_0301 Arch_0301 Arch_0301 359697 360380 + NADH-quinone oxidoreductase%2C chain I COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)~InterProIPR001450:IPR017896:IPR010226:IPR009051:IPR 017900~KEGG: bcv:Bcav_3221 NADH-quinone oxidoreductase%2C chain I~PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~SPTR: D0WMG9 NADH-quinone oxidoreductase subunit I~TIGRFAM: NADH-quinone oxidoreductase%2C chain I~PFAM: 4Fe-4S binding domain~TIGRFAM: NADH-quinone oxidoreductase%2C chain I gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0301 Arch_0302 Arch_0302 Arch_0302 360380 361372 + NADH-ubiquinone/plastoquinone oxidoreductase chain 6 COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J)~InterPro IPR001457~KEGG: bcv:Bcav_3220 NADH-ubiquinone/plastoquinone oxidoreductase chain 6~PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6~SPTR: D0WMH0 NADH dehydrogenase~PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6 gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0302 Arch_0303 Arch_0303 Arch_0303 361372 361671 + NADH-ubiquinone oxidoreductase chain 4L COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K)~InterPro IPR001133~KEGG: sro:Sros_0594 NADH-ubiquinone oxidoreductase chain 4L~PFAM: NADH-ubiquinone oxidoreductase chain 4L~SPTR: D0WMH1 NADH dehydrogenase I%2C K subunit~PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0303 Arch_0304 Arch_0304 Arch_0304 361691 363616 + proton-translocating NADH-quinone oxidoreductase%2C chain L COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit~InterProIPR001516:IPR001750:IPR003945:IPR003916:IPR 018393~KEGG: bcv:Bcav_3218 proton-translocating NADH-quinone oxidoreductase%2C chain L~PFAM: NADH/Ubiquinone/plastoquinone (complex I)%3B NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein~SPTR: D0WMH2 NADH-quinone oxidoreductase%2C L subunit~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain L~manually curated~PFAM: NADH-Ubiquinone/plastoquinone (complex I)%2C various chains%3B NADH-Ubiquinone oxidoreductase (complex I)%2C chain 5 N-terminus~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain L gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0304 Arch_0305 Arch_0305 Arch_0305 363636 365168 + proton-translocating NADH-quinone oxidoreductase%2C chain M COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M)~InterPro IPR001750:IPR010227:IPR003918~KEGG: bcv:Bcav_3217 proton-translocating NADH-quinone oxidoreductase%2C chain M~PFAM: NADH/Ubiquinone/plastoquinone (complex I)~SPTR: D0WMH3 NADH-quinone oxidoreductase%2C M subunit~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain M~PFAM: NADH-Ubiquinone/plastoquinone (complex I)%2C various chains~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain M gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0305 Arch_0306 Arch_0306 Arch_0306 365165 366766 + proton-translocating NADH-quinone oxidoreductase%2C chain N COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N)~InterPro IPR001750:IPR010096~KEGG: bcv:Bcav_3216 proton-translocating NADH-quinone oxidoreductase%2C chain N~PFAM: NADH/Ubiquinone/plastoquinone (complex I)~SPTR: D0WMH4 NADH-quinone oxidoreductase%2C N subunit~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain N~PFAM: NADH-Ubiquinone/plastoquinone (complex I)%2C various chains~TIGRFAM: proton-translocating NADH-quinone oxidoreductase%2C chain N gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0306 Arch_0307 Arch_0307 Arch_0307 366763 367779 + Polyprenyl synthetase COGs: COG0142 Geranylgeranyl pyrophosphate synthase~InterPro IPR000092:IPR008949~KEGG: bcv:Bcav_3215 polyprenyl synthetase~PFAM: Polyprenyl synthetase~SPTR: D0WMH5 Trans-hexaprenyltranstransferase~PFAM: Polyprenyl synthetase gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0307 Arch_0308 Arch_0308 Arch_0308 367884 370691 + preprotein translocase%2C SecA subunit COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase)~InterProIPR011115:IPR011130:IPR001650:IPR011116:IPR 014018:IPR000185~KEGG: bcv:Bcav_1246 preprotein translocase%2C SecA subunit~PFAM: SecA DEAD domain protein%3B SecA preprotein cross-linking region%3B helicase domain protein%3B SecA Wing and Scaffold~SPTR: D0WRM7 Preprotein translocase%2C SecA subunit~TIGRFAM: preprotein translocase%2C SecA subunit~PFAM: SecA DEAD-like domain%3B SecA preprotein cross-linking domain%3B SecA Wing and Scaffold domain~TIGRFAM: preprotein translocase%2C SecA subunit gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0308 Arch_0309 Arch_0309 Arch_0309 370807 372063 + deoxyribonuclease/rho motif-related TRAM COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase~InterPro IPR002792:IPR010280:IPR016027~KEGG: xce:Xcel_1914 deoxyribonuclease/rho motif-related TRAM~PFAM: deoxyribonuclease/rho motif-related TRAM%3B (Uracil-5)-methyltransferase~SPTR: D0WQH6 23S rRNA methyltransferase/RumA~PFAM: tRNA (Uracil-5-)-methyltransferase%3B TRAM domain gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0309 Arch_0310 Arch_0310 Arch_0310 372158 372571 - PilT protein domain protein COGs: COG1487 nucleic acid-binding protein contains PIN domain~InterPro IPR002716~KEGG: xce:Xcel_1526 PilT protein domain protein~PFAM: PilT protein domain protein~SPTR: D1BS64 PilT protein domain protein~PFAM: PIN domain gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0310 Arch_0311 Arch_0311 Arch_0311 372568 372804 - conserved hypothetical protein KEGG: mtc:MT2002 hypothetical protein~SPTR: Q8VJT9 Putative uncharacterized protein gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0311 Arch_0312 Arch_0312 Arch_0312 372980 373552 - hypothetical protein KEGG: bcv:Bcav_1253 hypothetical protein~SPTR: D0WRM8 Putative uncharacterized protein gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0312 Arch_0313 Arch_0313 Arch_0313 373552 373941 - Peptidoglycan-binding lysin domain protein InterPro IPR018392:IPR002482~KEGG: tte:TTE1337 LysM repeat-containing protein~PFAM: Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding LysM~SPTR: Q8RA91 LysM-repeat proteins and domains~PFAM: LysM domain gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0313 Arch_0314 Arch_0314 Arch_0314 374201 374827 + hypothetical protein KEGG: art:Arth_2703 hypothetical protein~SPTR: A0JYG2 Putative uncharacterized protein gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0314 Arch_0315 Arch_0315 Arch_0315 374845 375057 - DNA binding domain protein%2C excisionase family InterPro IPR000551:IPR010093:IPR009061~KEGG: jde:Jden_1818 DNA binding domain protein%2C excisionase family~PFAM: regulatory protein MerR~SPTR: D0WRN3 DNA binding domain%2C excisionase family protein~TIGRFAM: DNA binding domain protein%2C excisionase family~TIGRFAM: DNA binding domain%2C excisionase family gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0315 Arch_0316 Arch_0316 Arch_0316 375167 375751 + SAF domain protein InterPro IPR013974~KEGG: bfa:Bfae_20550 SAF domain-containing protein~PFAM: SAF domain protein~SPTR: C7ME55 SAF domain-containing protein~PFAM: SAF domain gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0316 Arch_0317 Arch_0317 Arch_0317 375748 376938 + hypothetical protein KEGG: bcv:Bcav_1258 ATPase involved in chromosome partitioning~SPTR: C2BSE5 ATPase involved in chromosome partitioning family protein gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0317 Arch_0318 Arch_0318 Arch_0318 376917 377366 + conserved hypothetical protein KEGG: bcv:Bcav_1260 hypothetical protein~SPTR: C5C1Q2 Putative uncharacterized protein gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0318 Arch_0319 Arch_0319 Arch_0319 377352 380411 - SMC domain protein COGs: COG0419 ATPase involved in DNA repair~InterPro IPR001412:IPR003395~KEGG: cms:CMS_2145 putative nuclease~PFAM: SMC domain protein~SPTR: D0WRP2 Putative nuclease sbcCD subunit C~TIGRFAM: DNA sulfur modification protein DndD%3B exonuclease SbcC gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0319 Arch_0320 Arch_0320 Arch_0320 380401 381588 - nuclease SbcCD%2C D subunit COGs: COG0420 DNA repair exonuclease~InterPro IPR004843:IPR004593~KEGG: cmi:CMM_0677 putative dsDNA exonuclease subunit~PFAM: metallophosphoesterase~SPTR: D1BIQ6 Exodeoxyribonuclease I subunit D~TIGRFAM: nuclease SbcCD%2C D subunit~PFAM: Calcineurin-like phosphoesterase%3B Type 5 capsule protein repressor C terminal~TIGRFAM: exonuclease SbcD gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0320 Arch_0321 Arch_0321 Arch_0321 381713 383152 + conserved hypothetical protein KEGG: cdi:DIP2121 hypothetical protein~SPTR: D0WPQ4 PAS/PAC domain protein~TIGRFAM: PAS domain S-box gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0321 Arch_0322 Arch_0322 Arch_0322 383206 384024 - CAMP factor family protein InterPro IPR010860~KEGG: pac:PPA2108 cAMP factor~PFAM: CAMP factor family protein~SPTR: D0YTE8 Camp3~PFAM: CAMP factor (Cfa) gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0322 Arch_0323 Arch_0323 Arch_0323 384404 384808 - hypothetical protein KEGG: kse:Ksed_18100 hypothetical protein~SPTR: C7NJC7 Putative uncharacterized protein gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0323 Arch_0324 Arch_0324 Arch_0324 384926 385558 + conserved hypothetical protein KEGG: mpa:MAP0512c hypothetical protein~SPTR: Q743S9 Putative uncharacterized protein gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0324 Arch_0325 Arch_0325 Arch_0325 386417 386737 + pseudogene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0325 Arch_0326 Arch_0326 Arch_0326 386808 387836 - GTPase EngC COGs: COG1162 GTPase~InterPro IPR010914:IPR004881~KEGG: jde:Jden_1813 GTPase EngC~PFAM: GTPase EngC~SPTR: C0W8L7 Possible GTP-binding protein~PFAM: Protein of unknown function%2C DUF258~TIGRFAM: ribosome small subunit-dependent GTPase A gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0326 Arch_0327 Arch_0327 Arch_0327 387833 389218 - 3-phosphoshikimate 1-carboxyvinyltransferase COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase~InterPro IPR001986:IPR006264:IPR013792:IPR016228~KEGG: bfa:Bfae_19470 3-phosphoshikimate 1-carboxyvinyltransferase~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase~SPTR: C7MDV5 3-phosphoshikimate 1-carboxyvinyltransferase~TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0327 Arch_0328 Arch_0328 Arch_0328 389218 389730 - DoxX family protein KEGG: bcv:Bcav_1264 DoxX family protein~SPTR: D0WRQ0 DoxX family protein gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0328 Arch_0329 Arch_0329 Arch_0329 389798 390601 - regulatory protein GntR HTH COGs: COG2186 Transcriptional regulators~InterPro IPR011991:IPR000524:IPR011711~KEGG: bcv:Bcav_3776 regulatory protein GntR HTH~PFAM: regulatory protein GntR HTH%3B GntR domain protein~SMART: regulatory protein GntR HTH~SPTR: D0WKM6 Transcriptional regulator%2C GntR family~PFAM: Bacterial regulatory proteins%2C gntR family%3B FCD domain gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0329 Arch_0330 Arch_0330 Arch_0330 390649 391566 + ROK family protein COGs: COG1940 Transcriptional regulator/sugar kinase~InterPro IPR000600~KEGG: bln:Blon_0644 ROK family protein~PFAM: ROK family protein~SPTR: A7BBZ4 Putative uncharacterized protein~PFAM: ROK family gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0330 Arch_0331 Arch_0331 Arch_0331 391566 392249 + N-acylglucosamine-6-phosphate 2-epimerase COGs: COG3010 Putative N-acetylmannosamine-6-phosphate epimerase~InterPro IPR013785:IPR007260:IPR011060~KEGG: bln:Blon_2402 N-acetylmannosamine-6-phosphate 2-epimerase~PFAM: putative N-acetylmannosamine-6-phosphate epimerase~PRIAM: N-acylglucosamine-6-phosphate 2-epimerase~SPTR: A7BBZ5 Putative uncharacterized protein~PFAM: Putative N-acetylmannosamine-6-phosphate epimerase gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0331 Arch_0332 Arch_0332 Arch_0332 392292 393068 + glucosamine/galactosamine-6-phosphate isomerase COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase~InterPro IPR018321:IPR006148~KEGG: xce:Xcel_1049 glucosamine-6-phosphate isomerase~PFAM: glucosamine/galactosamine-6-phosphate isomerase~SPTR: D0WNV6 Glucosamine-6-phosphate deaminase~PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase~TIGRFAM: glucosamine-6-phosphate isomerase gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0332 Arch_0333 Arch_0333 Arch_0333 393065 394225 + N-acetylglucosamine-6-phosphate deacetylase COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase~InterPro IPR006680~KEGG: xce:Xcel_2442 N-acetylglucosamine-6-phosphate deacetylase~PFAM: amidohydrolase~PRIAM: N-acetylglucosamine-6-phosphate deacetylase~SPTR: D0WNV7 N-acetylglucosamine-6-phosphate deacetylase~PFAM: Amidohydrolase family~TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0333 Arch_0334 Arch_0334 Arch_0334 394358 394963 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog~InterProIPR000838:IPR007627:IPR013249:IPR014293:IPR 014284:IPR013325:IPR013324~KEGG: bcv:Bcav_1265 RNA polymerase%2C sigma-24 subunit%2C ECF subfamily~PFAM: sigma-70 region 2 domain protein%3B Sigma-70 region 4 type 2~SPTR: D0WRQ2 RNA polymerase sigma-70 factor~TIGRFAM: RNA polymerase sigma-70 factor%3B RNA polymerase sigma factor%2C sigma-70 family~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family%3B RNA polymerase sigma-70 factor%2C TIGR02947 family gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0334 Arch_0335 Arch_0335 Arch_0335 394965 395246 + anti-sigma factor InterPro IPR014295~KEGG: cdi:DIP0710 putative anti sigma factor~SPTR: D0WRQ3 Anti-sigma factor RshA~TIGRFAM: anti-sigma factor~TIGRFAM: anti-sigma factor%2C TIGR02949 family gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0335 Arch_0336 Arch_0336 Arch_0336 395716 395931 - conserved hypothetical protein COGs: COG4877 conserved hypothetical protein~KEGG: ami:Amir_1210 hypothetical protein~SPTR: C6WRB0 Putative uncharacterized protein gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0336 Arch_0337 Arch_0337 Arch_0337 395936 396901 - band 7 protein COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs~InterPro IPR001107~KEGG: cgb:cg3138 membrane protease subunit stomatin/prohibitin-like protein~PFAM: band 7 protein~SMART: band 7 protein~SPTR: Q8NLV0 Membrane protease subunits%2C stomatin/prohibitin homologs~PFAM: SPFH domain / Band 7 family gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0337 Arch_0338 Arch_0338 Arch_0338 396980 398221 - hypothetical protein KEGG: cbb:CLD_3775 hypothetical protein~SPTR: C0W061 Membrane protein gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0338 Arch_0339 Arch_0339 Arch_0339 398383 399408 + hypothetical protein KEGG: pac:PPA1037 hypothetical protein~SPTR: C0W060 Putative uncharacterized protein gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0339 Arch_0340 Arch_0340 Arch_0340 399490 400569 - conserved hypothetical protein KEGG: cbt:CLH_1579 hypothetical protein~SPTR: D0YSP8 Membrane protein gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0340 Arch_0341 Arch_0341 Arch_0341 400661 401065 - PilT protein domain protein InterPro IPR002716~KEGG: afo:Afer_1620 PilT protein domain protein~PFAM: PilT protein domain protein~SPTR: C7M0N1 PilT protein domain protein~PFAM: PIN domain gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0341 Arch_0342 Arch_0342 Arch_0342 401062 401373 - prevent-host-death family protein InterPro IPR006442~KEGG: mbt:JTY_1986 hypothetical protein%2C antitoxin~SPTR: C0U553 Prevent-host-death family protein~TIGRFAM: prevent-host-death family protein~PFAM: Phd_YefM~TIGRFAM: prevent-host-death family protein gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0342 Arch_0343 Arch_0343 Arch_0343 401443 402090 - acyl-CoA thioesterase I precursor InterPro IPR013831:IPR013830~KEGG: xce:Xcel_2490 acyl-CoA thioesterase I precursor~SPTR: D0WRR1 Putative lipolytic enzyme%2C G-D-S-L gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0343 Arch_0344 Arch_0344 Arch_0344 402178 402273 - pseudogene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0344 Arch_0345 Arch_0345 Arch_0345 402260 402380 - pseudogene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0345 Arch_0346 Arch_0346 Arch_0346 402592 406308 - 2-oxoglutarate dehydrogenase%2C E1 subunit COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1)~InterPro IPR001078:IPR001017:IPR005475:IPR011603~KEGG: bcv:Bcav_1274 2-oxoglutarate dehydrogenase%2C E1 subunit~PFAM: Transketolase central region%3B dehydrogenase E1 component%3B catalytic domain of components of various dehydrogenase complexes~SPTR: D0WRR3 Oxoglutarate dehydrogenase (Succinyl-transferring)%2C E1 component~TIGRFAM: 2-oxoglutarate dehydrogenase%2C E1 subunit~PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain)%3B Dehydrogenase E1 component%3B Transketolase%2C pyrimidine binding domain~TIGRFAM: 2-oxoglutarate dehydrogenase%2C E1 component gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0346 Arch_0347 Arch_0347 Arch_0347 406501 407805 + protein of unknown function DUF21 COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR000644:IPR002550:IPR005170~KEGG: xce:Xcel_2484 protein of unknown function DUF21~PFAM: protein of unknown function DUF21%3B CBS domain containing protein%3B transporter-associated region~SPTR: C0W8N2 HCC family HlyC/CorC transporter~PFAM: CBS domain%3B Domain of unknown function DUF21%3B Transporter associated domain gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0347 Arch_0348 Arch_0348 Arch_0348 407802 408833 + protein of unknown function DUF21 COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR000644:IPR002550~KEGG: xce:Xcel_2483 protein of unknown function DUF21~PFAM: protein of unknown function DUF21%3B CBS domain containing protein~SMART: CBS domain containing protein~SPTR: D1BCR2 CBS domain-containing protein~PFAM: CBS domain%3B Domain of unknown function DUF21 gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0348 Arch_0349 Arch_0349 Arch_0349 408925 409938 + Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR016047:IPR011055~KEGG: mlu:Mlut_00220 metalloendopeptidase-like membrane protein~PFAM: Peptidase M23~SPTR: C0W8N4 Putative uncharacterized protein~PFAM: Peptidase family M23 gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0349 Arch_0350 Arch_0350 Arch_0350 409942 410718 + glycerophosphoryl diester phosphodiesterase COGs: COG0584 Glycerophosphoryl diester phosphodiesterase~InterPro IPR017946:IPR004129~KEGG: bcv:Bcav_2653 glycerophosphoryl diester phosphodiesterase~PFAM: glycerophosphoryl diester phosphodiesterase~SPTR: D0WRR5 Putative glycerophosphoryl diester phosphodiesterase~PFAM: Glycerophosphoryl diester phosphodiesterase family gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0350 Arch_0351 Arch_0351 Arch_0351 411029 412702 + arginyl-tRNA synthetase COGs: COG0018 Arginyl-tRNA synthetase~InterProIPR005148:IPR014729:IPR001412:IPR015945:IPR 008909:IPR001278:IPR009080~KEGG: kra:Krad_1250 arginyl-tRNA synthetase~PFAM: Arginyl-tRNA synthetase%2C class Ic%2C core%3B arginyl tRNA synthetase domain protein%3B DALR anticodon binding domain protein~PRIAM: Arginine--tRNA ligase~SPTR: D0WRR6 Arginine--tRNA ligase~TIGRFAM: arginyl-tRNA synthetase~PFAM: DALR anticodon binding domain%3B Arginyl tRNA synthetase N terminal domain%3B tRNA synthetases class I (R)~TIGRFAM: arginyl-tRNA synthetase gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0351 Arch_0352 Arch_0352 Arch_0352 412717 413544 + Homoserine kinase COGs: COG0083 Homoserine kinase~InterPro IPR014721:IPR020568~KEGG: cai:Caci_1201 homoserine kinase~SPTR: D0WRS3 Homoserine kinase gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0352 Arch_0353 Arch_0353 Arch_0353 413646 413900 + hypothetical protein KEGG: shi:Shel_02770 ATPase~SPTR: D0WFW9 Putative uncharacterized protein gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0353 Arch_0354 Arch_0354 Arch_0354 414197 415930 + transcription termination factor Rho COGs: COG1158 Transcription termination factor~InterPro IPR011113:IPR000194:IPR004665:IPR003593~KEGG: xce:Xcel_2462 transcription termination factor Rho~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B Rho termination factor RNA-binding~SMART: AAA ATPase~SPTR: D0WRS5 Transcription termination factor Rho~TIGRFAM: transcription termination factor Rho~PFAM: Rho termination factor%2C RNA-binding domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain~TIGRFAM: transcription termination factor Rho gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0354 Arch_0355 Arch_0355 Arch_0355 416124 416336 + ribosomal protein L31 COGs: COG0254 Ribosomal protein L31~InterPro IPR002150~KEGG: xce:Xcel_2460 ribosomal protein L31~PFAM: ribosomal protein L31~SPTR: C0W8Q2 50S ribosomal protein L31~TIGRFAM: ribosomal protein L31~manually curated~PFAM: Ribosomal protein L31~TIGRFAM: ribosomal protein L31 gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0355 Arch_0356 Arch_0356 Arch_0356 416456 417568 + peptide chain release factor 1 COGs: COG0216 Protein chain release factor A~InterPro IPR000352:IPR005139:IPR004373~KEGG: xce:Xcel_2459 peptide chain release factor 1~PFAM: Class I peptide chain release factor%3B PCRF domain protein~SPTR: D0WRS7 Peptide chain release factor 1~TIGRFAM: peptide chain release factor 1~PFAM: PCRF domain%3B RF-1 domain~TIGRFAM: peptide chain release factor 1 gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0356 Arch_0357 Arch_0357 Arch_0357 417565 418410 + protein-(glutamine-N5) methyltransferase%2C release factor-specific COGs: COG2890 Methylase of polypeptide chain release factors~InterPro IPR002052:IPR007848:IPR004556:IPR019874~KEGG: bln:Blon_0576 modification methylase%2C HemK family~PFAM: methyltransferase small~SPTR: D0WRS8 Protein-(Glutamine-N5) methyltransferase~TIGRFAM: protein-(glutamine-N5) methyltransferase%2C release factor-specific%3B modification methylase%2C HemK family~PFAM: Methyltransferase small domain~TIGRFAM: HemK family putative methylases%3B protein-(glutamine-N5) methyltransferase%2C release factor-specific gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0357 Arch_0358 Arch_0358 Arch_0358 418415 419062 + Sua5/YciO/YrdC/YwlC family protein COGs: COG0009 Putative translation factor (SUA5)~InterPro IPR017945:IPR006070:IPR004388~KEGG: art:Arth_2617 translation factor SUA5~PFAM: SUA5/yciO/yrdC domain~SPTR: C1RKE7 Translation factor SUA5~TIGRFAM: Sua5/YciO/YrdC/YwlC family protein~PFAM: yrdC domain~TIGRFAM: Sua5/YciO/YrdC/YwlC family protein gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0358 Arch_0359 Arch_0359 Arch_0359 419059 420207 + Glycosyl transferase%2C family 4%2C conserved region COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase~InterPro IPR018480:IPR018481~KEGG: jde:Jden_1782 glycosyl transferase family 4~PFAM: Glycosyl transferase%2C family 4%2C conserved region~SPTR: D0WRT0 Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase~PFAM: Glycosyl transferase family 4 gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0359 Arch_0360 Arch_0360 Arch_0360 420207 420659 + hypothetical protein KEGG: pct:PC1_2686 sulphate transporter~SPTR: Q9I537 Putative uncharacterized protein gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0360 Arch_0361 Arch_0361 Arch_0361 420805 421635 + ATP synthase F0%2C A subunit COGs: COG0356 F0F1-type ATP synthase subunit a~InterPro IPR000568~KEGG: xce:Xcel_2454 ATP synthase F0%2C A subunit~PFAM: H+transporting two-sector ATPase A subunit~SPTR: D0WRT2 ATP synthase F0%2C A subunit~TIGRFAM: ATP synthase F0%2C A subunit~PFAM: ATP synthase A chain~TIGRFAM: ATP synthase subunit 6 (eukaryotes)%2Calso subunit A (prokaryotes) gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0361 Arch_0362 Arch_0362 Arch_0362 421665 421874 + ATP synthase F0%2C C subunit InterPro IPR002379:IPR020537:IPR000454:IPR005953~KEGG: cms:CMS_1929 ATP synthase C chain~PFAM: H+transporting two-sector ATPase C subunit~SPTR: D0WRT3 ATP synthase F0%2C C subunit~TIGRFAM: ATP synthase F0%2C C subunit~PFAM: ATP synthase subunit C~TIGRFAM: ATP synthase%2C F0 subunit c gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0362 Arch_0363 Arch_0363 Arch_0363 421880 422440 + ATP synthase F0%2C B subunit COGs: COG0711 F0F1-type ATP synthase subunit b~InterPro IPR002146:IPR005864~KEGG: bcv:Bcav_1303 ATP synthase F0%2C B subunit~PFAM: H+transporting two-sector ATPase B/B' subunit~SPTR: D0WRT4 ATP synthase F0%2C B subunit~TIGRFAM: ATP synthase F0%2C B subunit~PFAM: ATP synthase B/B' CF(0)~TIGRFAM: ATP synthase%2C F0 subunit b gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0363 Arch_0364 Arch_0364 Arch_0364 422440 423255 + ATP synthase F1%2C delta subunit COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein)~InterPro IPR020781:IPR000711~KEGG: bcv:Bcav_1304 ATP synthase F1%2C delta subunit~PFAM: H+transporting two-sector ATPase delta (OSCP) subunit~SPTR: D0WRT5 Putative H+-ATPase delta subunit~TIGRFAM: ATP synthase F1%2C delta subunit~PFAM: ATP synthase delta (OSCP) subunit~TIGRFAM: ATP synthase%2C F1 delta subunit gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0364 Arch_0365 Arch_0365 Arch_0365 423296 424921 + ATP synthase F1%2C alpha subunit COGs: COG0056 F0F1-type ATP synthase alpha subunit~InterProIPR020003:IPR004100:IPR000194:IPR000793:IPR 005294:IPR018118~KEGG: xce:Xcel_2450 ATP synthase F1%2C alpha subunit~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B H+transporting two-sector ATPase alpha/beta subunit domain protein~SPTR: D0WRT6 ATP synthase F1%2C alpha subunit~TIGRFAM: ATP synthase F1%2C alpha subunit~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain%3B ATP synthase alpha/beta chain%2C C terminal domain~TIGRFAM: proton translocating ATP synthase%2C F1 alpha subunit gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0365 Arch_0366 Arch_0366 Arch_0366 424924 425829 + ATP synthase F1%2C gamma subunit COGs: COG0224 F0F1-type ATP synthase gamma subunit~InterPro IPR000131~KEGG: jde:Jden_1775 ATP synthase F1%2C gamma subunit~PFAM: H+transporting two-sector ATPase gamma subunit~SPTR: D0WRT7 ATP synthase F1%2C gamma subunit~TIGRFAM: ATP synthase F1%2C gamma subunit~PFAM: ATP synthase~TIGRFAM: ATP synthase%2C F1 gamma subunit gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0366 Arch_0367 Arch_0367 Arch_0367 425866 427326 + ATP synthase F1%2C beta subunit COGs: COG0055 F0F1-type ATP synthase beta subunit~InterProIPR020003:IPR004100:IPR000194:IPR000793:IPR 005722:IPR003593:IPR018118~KEGG: xce:Xcel_2448 ATP synthase F1%2C beta subunit~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B H+transporting two-sector ATPase alpha/beta subunit domain protein~SMART: AAA ATPase~SPTR: D0WRT8 ATP synthase F1%2C beta subunit~TIGRFAM: ATP synthase F1%2C beta subunit~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain%3B ATP synthase alpha/beta chain%2C C terminal domain~TIGRFAM: ATP synthase%2C F1 beta subunit gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0367 Arch_0368 Arch_0368 Arch_0368 427326 427577 + ATPase%2C F1 complex%2C delta/epsilon subunit COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit)~InterPro IPR020546~KEGG: bcv:Bcav_1308 H+transporting two-sector ATPase delta/epsilon subunit~PFAM: ATPase%2C F1 complex%2C delta/epsilon subunit-like~SPTR: C5C1U9 H+transporting two-sector ATPase delta/epsilon subunit~PFAM: ATP synthase%2C Delta/Epsilon chain%2C beta-sandwich domain gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0368 Arch_0369 Arch_0369 Arch_0369 427581 427985 + Protein of unknown function DUF2550 InterPro IPR019675~KEGG: kra:Krad_1272 hypothetical protein~PFAM: Protein of unknown function DUF2550~SPTR: A6W7H1 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF2550) gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0369 Arch_0370 Arch_0370 Arch_0370 428161 428856 + protein of unknown function DUF91 COGs: COG1637 nuclease of the RecB family~InterPro IPR002793~KEGG: ach:Achl_2332 protein of unknown function DUF91~PFAM: protein of unknown function DUF91~SPTR: D0WRU1 Nuclease of the RecB family protein~PFAM: Protein of unknown function DUF91 gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0370 Arch_0371 Arch_0371 Arch_0371 428856 429143 + conserved hypothetical protein KEGG: cai:Caci_1238 hypothetical protein~SPTR: D0WRU2 Putative ATP/GTP-binding protein%2C doubtful CDS gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0371 Arch_0372 Arch_0372 Arch_0372 429200 429979 + alpha/beta hydrolase fold protein COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily)~InterPro IPR000639:IPR000073~KEGG: bcv:Bcav_1326 alpha/beta hydrolase fold protein~PFAM: alpha/beta hydrolase fold~SPTR: D0WRU3 Putative SHCHC synthase~PFAM: alpha/beta hydrolase fold gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0372 Arch_0373 Arch_0373 Arch_0373 429989 431296 - conserved hypothetical protein KEGG: xce:Xcel_2425 hypothetical protein~SPTR: D0WRU4 Putative cellulose-binding protein~PFAM: DivIVA protein gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0373 Arch_0374 Arch_0374 Arch_0374 431441 432514 + hypothetical protein KEGG: bcv:Bcav_1331 hypothetical protein~SPTR: D0WRU5 Putative uncharacterized protein (Fragment) gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0374 Arch_0375 Arch_0375 Arch_0375 432507 433514 + hypothetical protein KEGG: bcv:Bcav_1332 hypothetical protein~SPTR: D0WRU7 Putative uncharacterized protein gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0375 Arch_0376 Arch_0376 Arch_0376 433519 434451 + thioredoxin domain protein COGs: COG3118 Thioredoxin domain-containing protein~InterPro IPR012335:IPR012336~KEGG: bcv:Bcav_1333 thioredoxin domain protein~SPTR: D0WRU8 Thioredoxin-related protein~PFAM: Thioredoxin gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0376 Arch_0377 Arch_0377 Arch_0377 434448 436124 - alpha amylase catalytic region COGs: COG0366 Glycosidase~InterPro IPR013781:IPR006047:IPR006589:IPR017853~KEGG: cdi:DIP0532 putative amylase~PFAM: alpha amylase catalytic region~SMART: alpha amylase catalytic sub domain~SPTR: Q6NJ80 Putative amylase~PFAM: Alpha amylase%2C catalytic domain gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0377 Arch_0378 Arch_0378 Arch_0378 436146 437156 - transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761:IPR010982~KEGG: sro:Sros_3351 LacI family transcription regulator~PFAM: regulatory protein LacI%3B periplasmic binding protein/LacI transcriptional regulator~SMART: regulatory protein LacI~SPTR: D0WRV0 HTH-type transcriptional regulator MalR~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0378 Arch_0379 Arch_0379 Arch_0379 437480 438712 + extracellular solute-binding protein family 1 COGs: COG2182 Maltose-binding periplasmic protein/domains~InterPro IPR006060:IPR006059~KEGG: bcv:Bcav_1781 extracellular solute-binding protein family 1~PFAM: extracellular solute-binding protein family 1~SPTR: C0W247 Periplasmic maltose-binding protein~PFAM: Bacterial extracellular solute-binding protein gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0379 Arch_0380 Arch_0380 Arch_0380 438780 440396 + binding-protein-dependent transport systems inner membrane component COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: bcv:Bcav_1782 fructose-bisphosphate aldolase~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C0W248 Maltose ABC superfamily ATP binding cassette transporter%2C membrane protein MalF~PFAM: Binding-protein-dependent transport system inner membrane component gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0380 Arch_0381 Arch_0381 Arch_0381 440399 441313 + binding-protein-dependent transport systems inner membrane component COGs: COG3833 ABC-type maltose transport systems permease component~InterPro IPR000515~KEGG: bcv:Bcav_1783 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C0W249 Maltose/maltodextrin ABC superfamily ATP binding cassette transporter%2C membrane protein~PFAM: Binding-protein-dependent transport system inner membrane component gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0381 Arch_0382 Arch_0382 Arch_0382 441407 441970 - NADPH-dependent FMN reductase COGs: COG0431 flavoprotein~InterPro IPR005025~KEGG: cur:cur_0127 putative oxidoreductase~PFAM: NADPH-dependent FMN reductase~SPTR: C6MAM3 Flavin reductase~PFAM: NADPH-dependent FMN reductase gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0382 Arch_0383 Arch_0383 Arch_0383 442194 444380 - 1%2C4-alpha-glucan branching enzyme COGs: COG0296 1 4-alpha-glucan branching enzyme~InterProIPR013783:IPR013781:IPR013780:IPR004193:IPR 006047:IPR006048:IPR006407:IPR006589:IPR017853:IPR014756~KEGG: bcv:Bcav_1334 1%2C4-alpha-glucan branching enzyme~PFAM: alpha amylase all-beta%3B glycoside hydrolase family 13 domain protein%3B alpha amylase catalytic region~SMART: alpha amylase catalytic sub domain~SPTR: D0WRV2 1%2C4-alpha-glucan branching enzyme~TIGRFAM: 1%2C4-alpha-glucan branching enzyme~PFAM: Alpha amylase%2C C-terminal all-beta domain%3B Alpha amylase%2C catalytic domain%3B Carbohydrate-binding module 48 (Isoamylase N-terminal domain)~TIGRFAM: alpha-1%2C4-glucan:alpha-1%2C4-glucan 6-glycosyltransferase gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0383 Arch_0384 Arch_0384 Arch_0384 444419 445798 - aminoglycoside phosphotransferase COGs: COG3281 Uncharacterized protein probably involved in trehalose biosynthesis~InterPro IPR002160:IPR002575:IPR011009~KEGG: cmi:CMM_2112 putative phosphotransferase~PFAM: aminoglycoside phosphotransferase~SPTR: D0WRV4 Pep2 protein~PFAM: Phosphotransferase enzyme family gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0384 Arch_0385 Arch_0385 Arch_0385 445785 447470 - trehalose synthase COGs: COG0366 Glycosidase~InterProIPR013781:IPR006047:IPR012810:IPR006589:IPR 017853~KEGG: xce:Xcel_2418 trehalose synthase~PFAM: alpha amylase catalytic region~SMART: alpha amylase catalytic sub domain~SPTR: D1BCY4 Trehalose synthase~TIGRFAM: trehalose synthase~PFAM: Alpha amylase%2C catalytic domain~TIGRFAM: trehalose synthase gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0385 Arch_0386 Arch_0386 Arch_0386 447467 449542 - alpha amylase catalytic region COGs: COG0366 Glycosidase~InterPro IPR013781:IPR006047:IPR006589:IPR017853~KEGG: bcv:Bcav_1337 alpha amylase catalytic region~PFAM: alpha amylase catalytic region~SMART: alpha amylase catalytic sub domain~SPTR: D0WRV5 Alpha-amylase family protein~PFAM: Alpha amylase%2C catalytic domain%3B Domain of unknown function (DUF3416) gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0386 Arch_0387 Arch_0387 Arch_0387 449643 450314 - methylated-DNA/protein-cysteinemethyltransferase COGs: COG0350 Methylated DNA-protein cysteine methyltransferase~InterPro IPR011991:IPR014048~KEGG: cpc:Cpar_1288 methylated-DNA/protein-cysteine methyltransferase~PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding~SPTR: B3QP38 Methylated-DNA/protein-cysteine methyltransferase~TIGRFAM: methylated-DNA/protein-cysteine methyltransferase~PFAM: 6-O-methylguanine DNA methyltransferase%2C DNA binding domain~TIGRFAM: O-6-methylguanine DNA methyltransferase gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0387 Arch_0388 Arch_0388 Arch_0388 450671 453037 - glycogen/starch/alpha-glucan phosphorylase COGs: COG0058 Glucan phosphorylase~InterPro IPR000811:IPR011833~KEGG: pac:PPA0081 carbohydrate phosphorylase~PFAM: glycosyl transferase family 35~SPTR: C0VYI8 Phosphorylase~TIGRFAM: glycogen/starch/alpha-glucan phosphorylase~PFAM: Carbohydrate phosphorylase~TIGRFAM: glycogen/starch/alpha-glucan phosphorylases gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0388 Arch_0389 Arch_0389 Arch_0389 453223 454329 - tryptophanyl-tRNA synthetase COGs: COG0180 Tryptophanyl-tRNA synthetase~InterPro IPR014729:IPR001412:IPR002306:IPR002305~KEGG: pac:PPA1327 tryptophanyl-tRNA synthetase~PFAM: aminoacyl-tRNA synthetase class Ib~SPTR: C0W021 Tryptophan--tRNA ligase~TIGRFAM: tryptophanyl-tRNA synthetase~PFAM: tRNA synthetases class I (W and Y)~TIGRFAM: tryptophanyl-tRNA synthetase gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0389 Arch_0390 Arch_0390 Arch_0390 454629 454931 - pseudogene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0390 Arch_0391 Arch_0391 Arch_0391 454950 457106 - glycogen debranching enzyme GlgX COGs: COG1523 Type II secretory pathway pullulanase PulA and related glycosidase~InterProIPR013783:IPR013781:IPR004193:IPR006047:IPR 011837:IPR006589:IPR017853:IPR014756~KEGG: bcv:Bcav_1345 glycogen debranching enzyme GlgX~PFAM: glycoside hydrolase family 13 domain protein%3B alpha amylase catalytic region~SMART: alpha amylase catalytic sub domain~SPTR: D0WRW1 Glycogen debranching enzyme GlgX~TIGRFAM: glycogen debranching enzyme GlgX~PFAM: Alpha amylase%2C catalytic domain%3B Carbohydrate-binding module 48 (Isoamylase N-terminal domain)~TIGRFAM: glycogen debranching enzyme GlgX gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0391 Arch_0392 Arch_0392 Arch_0392 457234 458022 + NUDIX hydrolase COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding~InterPro IPR000086:IPR020084:IPR015376:IPR015797~KEGG: nca:Noca_1514 NUDIX hydrolase~PFAM: NUDIX hydrolase%3B Zinc ribbon NADH pyrophosphatase~SPTR: D1BAV9 Zn-finger containing NTP pyrophosphohydrolase~PFAM: NUDIX domain gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0392 Arch_0393 Arch_0393 Arch_0393 458134 460167 + UvrD/REP helicase COGs: COG0210 Superfamily I DNA and RNA helicase~InterPro IPR002121:IPR014016:IPR014017:IPR000212~KEGG: bcv:Bcav_2897 UvrD/REP helicase~PFAM: UvrD/REP helicase%3B HRDC domain protein~SMART: HRDC domain protein~SPTR: D0WRX3 ATP-dependent DNA helicase II~PFAM: HRDC domain%3B UvrD/REP helicase gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0393 Arch_0394 Arch_0394 Arch_0394 460111 461064 - hypothetical protein KEGG: bcv:Bcav_2892 hypothetical protein~SPTR: D0WRX4 UBA/THIF-type NAD/FAD binding fold protein gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0394 Arch_0395 Arch_0395 Arch_0395 461157 462518 - conserved hypothetical protein COGs: COG5282 conserved hypothetical protein~InterPro IPR018766~KEGG: bcv:Bcav_2890 hypothetical protein~PFAM: Protein of unknown function DUF2342~SPTR: D0WRX5 Putative uncharacterized protein~TIGRFAM: conserved hypothetical protein~PFAM: Uncharacterised conserved protein (DUF2342)~TIGRFAM: conserved hypothetical protein gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0395 Arch_0396 Arch_0396 Arch_0396 462645 463763 + conserved hypothetical protein COGs: COG3480 secreted protein containing a PDZ domain~InterPro IPR020568~KEGG: cms:CMS_1888 hypothetical protein~SPTR: D0WRX7 Pdz/dhr/glgf protein~PFAM: Lon protease (S16) C-terminal proteolytic domain gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0396 Arch_0397 Arch_0397 Arch_0397 463767 464315 - conserved hypothetical protein KEGG: jde:Jden_0724 hypothetical protein~SPTR: C7R1S0 Putative uncharacterized protein gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0397 Arch_0398 Arch_0398 Arch_0398 464457 467516 + protein of unknown function UPF0182 COGs: COG1615 conserved hypothetical protein~InterPro IPR005372~KEGG: bcv:Bcav_2885 protein of unknown function UPF0182~PFAM: protein of unknown function UPF0182~SPTR: D0WRY1 Putative integral membrane protein~PFAM: Uncharacterised protein family (UPF0182) gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0398 Arch_0399 Arch_0399 Arch_0399 468011 468727 - hypothetical protein KEGG: ttj:TTHA0096 NADH-quinone oxidoreductase chain 13~SPTR: Q72GE0 NADH-quinone oxidoreductase chain M gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0399 Arch_0400 Arch_0400 Arch_0400 468724 469476 - ABC transporter related protein COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: xce:Xcel_3322 ABC transporter related protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0WP13 Putative ABC transporter%2C ATP-binding protein gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0400 Arch_0401 Arch_0401 Arch_0401 469473 469862 - transcriptional regulator%2C GntR family COGs: COG1725 transcriptional regulator protein~InterPro IPR011991:IPR000524~KEGG: kse:Ksed_02920 predicted transcriptional regulator~PFAM: regulatory protein GntR HTH~SMART: regulatory protein GntR HTH~SPTR: D0WP12 Transcriptional regulator%2C GntR family~PFAM: Bacterial regulatory proteins%2C gntR family gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0401 Arch_0402 Arch_0402 Arch_0402 470198 470641 + pyrimidine dimer DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase KEGG: kse:Ksed_00360 pyrimidine dimer DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase~SPTR: C7NIG2 Pyrimidine dimer DNA glycosylase /DNA-(Apurinic or apyrimidinic site) lyase gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0402 Arch_0403 Arch_0403 Arch_0403 470965 471513 + transcriptional regulator%2C PadR-like family InterPro IPR011991:IPR005149~KEGG: art:Arth_0527 PadR family transcriptional regulator~PFAM: transcriptional regulator PadR family protein~SPTR: C2KN54 PadR family transcriptional regulator~PFAM: Transcriptional regulator PadR-like family gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0403 Arch_0404 Arch_0404 Arch_0404 471483 472145 + ABC transporter related protein COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR017871:IPR003439:IPR003593~KEGG: cai:Caci_7925 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0YQR1 Lipoprotein releasing system%2C ATP-binding protein~PFAM: ABC transporter gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0404 Arch_0405 Arch_0405 Arch_0405 472152 474344 + protein of unknown function DUF214 InterPro IPR003838~KEGG: sro:Sros_4389 hypothetical protein~PFAM: protein of unknown function DUF214~SPTR: D0YQR0 Putative efflux ABC transporter%2C permease protein~PFAM: Predicted permease gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0405 Arch_0406 Arch_0406 Arch_0406 474387 474971 + putative molybdopterin-guanine dinucleotide biosynthesis protein A COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A~InterPro IPR002052~KEGG: pac:PPA0512 putative molybdopterin-guanine dinucleotide biosynthesis protein A~SPTR: C2BVS3 Molybdopterin-guanine dinucleotide biosynthesis protein gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0406 Arch_0407 Arch_0407 Arch_0407 474975 475646 - FMN-binding negative transcriptional regulator COGs: COG2808 Transcriptional regulator~InterPro IPR007396~KEGG: bvi:Bcep1808_3517 negative transcriptional regulator~PFAM: Negative transcriptional regulator~SPTR: C1WYZ0 Transcriptional regulator%2C COG2808~PFAM: Putative FMN-binding domain gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0407 Arch_0408 Arch_0408 Arch_0408 475657 476196 - Dihydrofolate reductase COGs: COG0262 Dihydrofolate reductase~InterPro IPR017925:IPR001796:IPR012259~KEGG: lxx:Lxx09920 dihydrofolate reductase~PFAM: dihydrofolate reductase region~PRIAM: Dihydrofolate reductase~SPTR: D0WS26 Dihydrofolate reductase~PFAM: Dihydrofolate reductase gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0408 Arch_0409 Arch_0409 Arch_0409 476193 476993 - thymidylate synthase COGs: COG0207 Thymidylate synthase~InterPro IPR000398~KEGG: nfa:nfa50220 thymidylate synthase~PFAM: thymidylate synthase~PRIAM: Thymidylate synthase~SPTR: D0WS27 Thymidylate synthase~TIGRFAM: thymidylate synthase~PFAM: Thymidylate synthase~TIGRFAM: thymidylate synthase gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0409 Arch_0410 Arch_0410 Arch_0410 476990 477508 - Protein of unknown function DUF2505 InterPro IPR019639~KEGG: bcv:Bcav_2830 hypothetical protein~PFAM: Protein of unknown function DUF2505~SPTR: D0WS28 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF2505) gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0410 Arch_0411 Arch_0411 Arch_0411 477531 478955 + signal transduction histidine kinase COGs: COG3920 Signal transduction histidine kinase~InterPro IPR003594:IPR005467:IPR013656:IPR011495~KEGG: bcv:Bcav_2829 signal transduction histidine kinase~PFAM: histidine kinase dimerisation/phosphoacceptor%3B PAS fold-4 domain protein%3B ATP-binding region ATPase domain protein~SMART: ATP-binding region ATPase domain protein~SPTR: D0WS29 Sensor histidine kinase~PFAM: Histidine kinase%3B Signal transduction histidine kinase%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B PAS fold~TIGRFAM: PAS domain S-box gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0411 Arch_0412 Arch_0412 Arch_0412 479024 479272 - transcription factor WhiB InterPro IPR003482~KEGG: kra:Krad_3795 transcription factor WhiB~PFAM: transcription factor WhiB~SPTR: A6WEL9 Transcription factor WhiB~PFAM: Transcription factor WhiB gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0412 Arch_0413 Arch_0413 Arch_0413 479419 481932 - protein of unknown function DUF214 InterPro IPR003838~KEGG: bcv:Bcav_2825 protein of unknown function DUF214~PFAM: protein of unknown function DUF214~SPTR: C5V906 ABC transporter integral membrane protein~PFAM: Predicted permease gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0413 Arch_0414 Arch_0414 Arch_0414 481936 482664 - ABC transporter related protein COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR003439~KEGG: blt:Balat_1147 putative ABC transporter ATP-binding protein~PFAM: ABC transporter related~SPTR: C6AJB3 Putative ABC transporter ATP-binding protein~PFAM: ABC transporter gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0414 Arch_0415 Arch_0415 Arch_0415 482661 483353 - two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterProIPR011991:IPR000792:IPR001789:IPR011006:IPR 016032~KEGG: bcv:Bcav_2822 two component transcriptional regulator%2C LuxR family~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: regulatory protein LuxR%3B response regulator receiver~SPTR: D0WS35 Two-component system response regulator~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0415 Arch_0416 Arch_0416 Arch_0416 483350 484540 - integral membrane sensor signal transduction histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR003594:IPR011712~KEGG: bcv:Bcav_2821 histidine kinase~PFAM: histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~SPTR: D0WS36 Putative signal transduction histidine kinase~PFAM: Histidine kinase%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0416 Arch_0417 Arch_0417 Arch_0417 484570 487101 + DNA ligase%2C NAD-dependent COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II)~InterProIPR018239:IPR001357:IPR013839:IPR004150:IPR 004149:IPR000445:IPR001679:IPR013840:IPR010994:IPR016027~KEGG: bfa:Bfae_18930 DNA ligase%2C NAD-dependent~PFAM: NAD-dependent DNA ligase adenylation%3B NAD-dependent DNA ligase OB-fold%3B zinc-finger NAD-dependent DNA ligase C4-type%3B helix-hairpin-helix motif%3B BRCT domain protein~SMART: NAD-dependent DNA ligase %3B BRCT domain protein~SPTR: D0WS37 DNA ligase%2C NAD-dependent~TIGRFAM: DNA ligase%2C NAD-dependent~PFAM: NAD-dependent DNA ligase OB-fold domain%3B NAD-dependent DNA ligase adenylation domain%3B NAD-dependent DNA ligase C4 zinc finger domain%3B BRCA1 C Terminus (BRCT) domain~TIGRFAM: DNA ligase%2C NAD-dependent gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0417 Arch_0418 Arch_0418 Arch_0418 487147 488406 - phospholipase D/Transphosphatidylase COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase~InterPro IPR001736~KEGG: xce:Xcel_1743 phospholipase D/transphosphatidylase~PFAM: phospholipase D/Transphosphatidylase~SMART: phospholipase D/Transphosphatidylase~SPTR: D0WS38 Cardiolipin synthetase~PFAM: Phospholipase D Active site motif gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0418 Arch_0419 Arch_0419 Arch_0419 488464 488760 + glutamyl-tRNA(Gln) amidotransferase%2C C subunit COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit~InterPro IPR003837~KEGG: bcv:Bcav_1383 glutamyl-tRNA(Gln) amidotransferase%2C C subunit~PFAM: Glu-tRNAGln amidotransferase C subunit~SPTR: C5C2F6 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C~TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C C subunit~PFAM: Glu-tRNAGln amidotransferase C subunit~TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase%2C C subunit gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0419 Arch_0420 Arch_0420 Arch_0420 488764 490263 + glutamyl-tRNA(Gln) amidotransferase%2C A subunit COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase~InterPro IPR000120:IPR020556:IPR004412~KEGG: jde:Jden_1714 glutamyl-tRNA(Gln) amidotransferase%2C A subunit~PFAM: Amidase~SPTR: C2BRA5 Aspartyl/glutamyl-tRNA amidotransferase subunit A~TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C A subunit~PFAM: Amidase~TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase%2C A subunit gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0420 Arch_0421 Arch_0421 Arch_0421 490269 491762 + glutamyl-tRNA(Gln) amidotransferase%2C B subunit COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)~InterProIPR017958:IPR006075:IPR006107:IPR018027:IPR 004413:IPR003789~KEGG: bcv:Bcav_1385 glutamyl-tRNA(Gln) amidotransferase%2C B subunit~PFAM: GatB region%3B GatB central domain protein%3B Asn/Gln amidotransferase~SPTR: A7B8Q7 Putative uncharacterized protein~TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C B subunit~PFAM: GatB/GatE catalytic domain%3B GatB domain~TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase%2C B subunit gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0421 Arch_0422 Arch_0422 Arch_0422 491842 493242 + malic protein NAD-binding protein COGs: COG0281 Malic enzyme~InterPro IPR016040:IPR015884:IPR012301:IPR012302~KEGG: nca:Noca_2034 malate dehydrogenase~PFAM: malic protein NAD-binding%3B malic protein domain protein~SPTR: D0WL78 NADP-dependent malic enzyme~PFAM: Malic enzyme%2C NAD binding domain%3B Malic enzyme%2C N-terminal domain gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0422 Arch_0423 Arch_0423 Arch_0423 499212 499652 + conserved hypothetical protein KEGG: cdi:DIP0114 hypothetical protein~SPTR: Q6NKB9 Putative membrane protein~PFAM: Protein of unknown function (DUF2871) gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0423 Arch_0424 Arch_0424 Arch_0424 499823 501205 - Na+/H+ antiporter NhaA COGs: COG3004 Na+/H+ antiporter~InterPro IPR004670~KEGG: art:Arth_0107 Na+/H+ antiporter NhaA~PFAM: Na+/H+ antiporter NhaA~SPTR: A0JR38 Na(+)/H(+) antiporter nhaA~TIGRFAM: Na+/H+ antiporter NhaA~PFAM: Na+/H+ antiporter 1~TIGRFAM: Na+/H+ antiporter NhaA gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0424 Arch_0425 Arch_0425 Arch_0425 501374 502129 + Methyltransferase type 11 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis~InterPro IPR013216~KEGG: art:Arth_2657 methyltransferase type 11~PFAM: Methyltransferase type 11~SPTR: A7BAJ7 Putative uncharacterized protein~PFAM: Methyltransferase domain gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0425 Arch_0426 Arch_0426 Arch_0426 502245 503570 + protein of unknown function DUF1212 COGs: COG2966 conserved hypothetical protein~InterPro IPR010619~KEGG: rmu:RMDY18_06380 hypothetical protein~PFAM: protein of unknown function DUF1212~SPTR: C0W2A9 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF1212) gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0426 Arch_0427 Arch_0427 Arch_0427 503696 505297 - YidE/YbjL duplication COGs: COG2985 permease~InterPro IPR006037:IPR006512:IPR016040~KEGG: car:cauri_1117 putative transporter protein~PFAM: YidE/YbjL duplication domain protein%3B TrkA-C domain protein~SPTR: C0W2B0 YidE/YbjL family protein~TIGRFAM: YidE/YbjL duplication~PFAM: Predicted Permease Membrane Region%3B TrkA-C domain~TIGRFAM: YidE/YbjL duplication gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0427 Arch_0428 Arch_0428 Arch_0428 505524 506969 + aspartate ammonia-lyase COGs: COG1027 Aspartate ammonia-lyase~InterProIPR020557:IPR000362:IPR003031:IPR018951:IPR 004708:IPR008948~KEGG: hsm:HSM_0765 aspartate ammonia-lyase~PFAM: fumarate lyase%3B Fumarase C-like~SPTR: B0USK4 Aspartate ammonia-lyase~TIGRFAM: aspartate ammonia-lyase~PFAM: Lyase%3B Fumarase C C-terminus~TIGRFAM: aspartate ammonia-lyase gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0428 Arch_0429 Arch_0429 Arch_0429 507034 508183 + pseudogene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0429 Arch_0430 Arch_0430 Arch_0430 508451 510538 + formate acetyltransferase COGs: COG1882 Pyruvate-formate lyase~InterPro IPR001150:IPR004184:IPR005949~KEGG: car:cauri_2089 formate acetyltransferase~PFAM: pyruvate formate-lyase PFL%3B formate C-acetyltransferase glycine radical~PRIAM: Formate C-acetyltransferase~SPTR: C0VY68 Formate C-acetyltransferase~TIGRFAM: formate acetyltransferase~PFAM: Glycine radical%3B Pyruvate formate lyase~TIGRFAM: formate acetyltransferase 1 gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0430 Arch_0431 Arch_0431 Arch_0431 510591 510839 + formate C-acetyltransferase glycine radical COGs: COG1882 Pyruvate-formate lyase~InterPro IPR019777:IPR001150~KEGG: car:cauri_2088 formate acetyltransferase~PFAM: formate C-acetyltransferase glycine radical~SPTR: C0VY69 Putative uncharacterized protein~PFAM: Glycine radical gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0431 Arch_0432 Arch_0432 Arch_0432 510863 511789 + pyruvate formate-lyase activating enzyme COGs: COG1180 Pyruvate-formate lyase-activating enzyme~InterPro IPR001989:IPR007197:IPR012838~KEGG: jde:Jden_1397 pyruvate formate-lyase activating enzyme~PFAM: Radical SAM domain protein~PRIAM: [Formate-C-acetyltransferase]-activating enzyme~SPTR: C0VY70 [formate-C-acetyltransferase]-activating enzyme~TIGRFAM: pyruvate formate-lyase activating enzyme~PFAM: Radical SAM superfamily~TIGRFAM: pyruvate formate-lyase 1-activating enzyme gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0432 Arch_0433 Arch_0433 Arch_0433 511786 512478 - alanine racemase domain protein COGs: COG0325 enzyme with a TIM-barrel fold~InterPro IPR001608:IPR011078~KEGG: eba:ebA1768 hypothetical protein~PFAM: alanine racemase domain protein~SPTR: D0WRH4 Pyridoxal phosphate enzyme%2C YggS family~PFAM: Alanine racemase%2C N-terminal domain~TIGRFAM: pyridoxal phosphate enzyme%2C YggS family gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0433 Arch_0434 Arch_0434 Arch_0434 512478 515150 - DEAD/DEAH box helicase domain protein COGs: COG4581 Superfamily II RNA helicase~InterPro IPR014021:IPR001650:IPR011545:IPR014001~KEGG: nfa:nfa37840 putative helicase~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: D0WRH3 Putative ATP-dependent helicase~PFAM: Domain of unknown function (DUF3516)%3B Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0434 Arch_0435 Arch_0435 Arch_0435 515147 516154 - transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761:IPR010982~KEGG: pac:PPA2330 LacI family transcription regulator~PFAM: regulatory protein LacI%3B periplasmic binding protein/LacI transcriptional regulator~SMART: regulatory protein LacI~SPTR: D0YQM2 LacI family transcription regulator~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0435 Arch_0436 Arch_0436 Arch_0436 516313 517722 - Glucuronate isomerase COGs: COG1904 Glucuronate isomerase~InterPro IPR003766~KEGG: art:Arth_0502 glucuronate isomerase~PFAM: Glucuronate isomerase~PRIAM: Glucuronate isomerase~SPTR: D0YQL1 Glucuronate isomerase~PFAM: Glucuronate isomerase gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0436 Arch_0437 Arch_0437 Arch_0437 517801 518901 - PfkB domain protein COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: xce:Xcel_0908 PfkB domain protein~PFAM: PfkB domain protein~SPTR: D0YQL2 Carbohydrate kinase~PFAM: pfkB family carbohydrate kinase gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0437 Arch_0438 Arch_0438 Arch_0438 518898 519542 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase~InterPro IPR013785:IPR000887~KEGG: tau:Tola_0229 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase~PFAM: KDPG and KHG aldolase~SPTR: D0YQL3 Khg/kdpg aldolase~TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase~PFAM: KDPG and KHG aldolase~TIGRFAM: Entner-Doudoroff aldolase gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0438 Arch_0439 Arch_0439 Arch_0439 519572 520651 - mannonate dehydratase COGs: COG1312 D-mannonate dehydratase~InterPro IPR013022:IPR004628~KEGG: pac:PPA2327 mannonate dehydratase~PFAM: Mannonate dehydratase~PRIAM: Mannonate dehydratase~SPTR: D0YQL4 Mannonate dehydratase~TIGRFAM: mannonate dehydratase~PFAM: D-mannonate dehydratase (UxuA)~TIGRFAM: mannonate dehydratase gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0439 Arch_0440 Arch_0440 Arch_0440 520680 522281 - Mannitol dehydrogenase domain protein COGs: COG0246 Mannitol-1-phosphate/altronate dehydrogenase~InterProIPR016040:IPR013328:IPR013131:IPR013118:IPR 008927~KEGG: pac:PPA2328 D-mannonate oxidoreductase~PFAM: Mannitol dehydrogenase domain%3B Mannitol dehydrogenase rossman domain~SPTR: D0YQL5 D-mannonate oxidoreductase~PFAM: Mannitol dehydrogenase C-terminal domain%3B Mannitol dehydrogenase Rossmann domain gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0440 Arch_0441 Arch_0441 Arch_0441 522412 522744 - hypothetical protein KEGG: ach:Achl_0779 oxidoreductase domain protein~SPTR: B8HC64 Oxidoreductase domain protein gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0441 Arch_0442 Arch_0442 Arch_0442 522981 524165 + hypothetical protein KEGG: mno:Mnod_6520 chromosome segregation ATPase-like protein~SPTR: B8IDC3 Chromosome segregation ATPase-like protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0442 Arch_0443 Arch_0443 Arch_0443 524340 525362 + conserved hypothetical protein KEGG: xce:Xcel_2511 hypothetical protein~SPTR: C0W204 Putative uncharacterized protein gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0443 Arch_0444 Arch_0444 Arch_0444 525365 526123 + ABC transporter related protein COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR017871:IPR003439:IPR003593~KEGG: xce:Xcel_2510 ABC transporter related protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: A7BA83 Putative uncharacterized protein~PFAM: ABC transporter gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0444 Arch_0445 Arch_0445 Arch_0445 526120 527436 + protein of unknown function DUF214 COGs: COG0577 ABC-type antimicrobial peptide transport system permease component~InterPro IPR003838~KEGG: cmi:CMM_2031 putative ABC transporter%2C permease component~PFAM: protein of unknown function DUF214~SPTR: C0W202 ABC superfamily ATP binding cassette transporter%2C permease protein~PFAM: Predicted permease gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0445 Arch_0446 Arch_0446 Arch_0446 527941 528558 - conserved hypothetical protein InterPro IPR020137~KEGG: jde:Jden_2460 hypothetical protein~SPTR: C1RLQ9 Putative uncharacterized protein gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0446 Arch_0447 Arch_0447 Arch_0447 528718 529707 + conserved hypothetical protein InterPro IPR011761~KEGG: jde:Jden_0904 hypothetical protein~SPTR: D0WRH0 Putative uncharacterized protein~PFAM: Prokaryotic glutathione synthetase%2C ATP-grasp domain gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0447 Arch_0448 Arch_0448 Arch_0448 530249 530905 - Exonuclease RNase T and DNA polymerase III COGs: COG1949 Oligoribonuclease (3'->5' exoribonuclease)~InterPro IPR013520:IPR006055:IPR012337~KEGG: krh:KRH_14510 oligoribonuclease~PFAM: Exonuclease RNase T and DNA polymerase III~SMART: Exonuclease~SPTR: D0WRE7 Oligoribonuclease~manually curated~PFAM: Exonuclease gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0448 Arch_0449 Arch_0449 Arch_0449 531094 532704 + putative transcriptional regulator%2C TetR family KEGG: bcv:Bcav_2645 putative transcriptional regulator%2C TetR family~SPTR: D0WRE6 Putative ATP/GTP-binding protein~PFAM: Dynamin family gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0449 Arch_0450 Arch_0450 Arch_0450 532731 534197 + hypothetical protein KEGG: bcv:Bcav_2644 ATP-binding membrane protein~SPTR: D0WRE5 Putative ATP-binding membrane protein~PFAM: Elongation factor Tu GTP binding domain gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0450 Arch_0451 Arch_0451 Arch_0451 534332 534892 + single-strand binding protein InterPro IPR012340:IPR000424:IPR011344:IPR016027~KEGG: ach:Achl_2173 single-strand binding protein~PFAM: single-strand binding protein/Primosomal replication protein n~SPTR: D0WRE4 Single-stranded DNA-binding protein 1~TIGRFAM: single-strand binding protein~PFAM: Single-strand binding protein family~TIGRFAM: single stranded DNA-binding protein (ssb) gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0451 Arch_0452 Arch_0452 Arch_0452 534986 536668 + ABC transporter related protein COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR017871:IPR003439:IPR003593~KEGG: mlu:Mlut_09750 ATPase component of ABC transporters with duplicated ATPase domain~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0WRE3 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0452 Arch_0453 Arch_0453 Arch_0453 536800 538446 + hypothetical protein KEGG: cbt:CLH_0659 putative lipoprotein~SPTR: C0VY11 Putative uncharacterized protein gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0453 Arch_0454 Arch_0454 Arch_0454 538772 539464 + pseudogene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0454 Arch_0455 Arch_0455 Arch_0455 539457 540050 + putative transcription regulator InterPro IPR010982~KEGG: cef:CE1210 putative transcription regulator~SPTR: Q8FQB1 Putative transcription regulator gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0455 Arch_0456 Arch_0456 Arch_0456 540465 540832 + pseudogene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0456 Arch_0457 Arch_0457 Arch_0457 541060 541437 + HNH endonuclease InterPro IPR002711:IPR003615~KEGG: cdi:DIP2153 putative bacteriophage holin protein~PFAM: HNH endonuclease~SMART: HNH nuclease~SPTR: C2KNY6 Possible bacteriophage endonuclease~PFAM: HNH endonuclease gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0457 Arch_0458 Arch_0458 Arch_0458 541685 542193 + pseudogene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0458 Arch_0459 Arch_0459 Arch_0459 542495 545116 + LPXTG-motif cell wall anchor domain protein COGs: COG4932 outer membrane protein~InterPro IPR008454:IPR019931~KEGG: sjj:SPJ_0350 collagen-binding protein A~PFAM: Cna B domain protein~SPTR: C1CCC8 Collagen-binding protein A~TIGRFAM: LPXTG-motif cell wall anchor domain protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0459 Arch_0460 Arch_0460 Arch_0460 545487 545906 - hypothetical protein KEGG: jde:Jden_1529 alpha amylase catalytic region~SPTR: C0W0B5 Putative uncharacterized protein gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0460 Arch_0461 Arch_0461 Arch_0461 545930 546178 + pseudogene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0461 Arch_0462 Arch_0462 Arch_0462 546175 546835 + pseudogene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0462 Arch_0463 Arch_0463 Arch_0463 546855 547244 - hypothetical protein KEGG: sfr:Sfri_3959 GCN5-related N-acetyltransferase~SPTR: D0YU50 Putative uncharacterized protein gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0463 Arch_0464 Arch_0464 Arch_0464 547520 547942 - Uncharacterized phage-associated protein COGs: COG3600 Uncharacterized phage-associated protein~KEGG: vei:Veis_1323 hypothetical protein~SPTR: D0YU49 Putative phage-associated protein gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0464 Arch_0465 Arch_0465 Arch_0465 548014 548529 - NUDIX hydrolase InterPro IPR000086:IPR020084:IPR015797~KEGG: lhe:lhv_1697 hypothetical protein~PFAM: NUDIX hydrolase~SPTR: C7XIN6 NUDIX family hydrolase~PFAM: NUDIX domain gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0465 Arch_0466 Arch_0466 Arch_0466 548696 548956 + addiction module antitoxin%2C RelB/DinJ family InterPro IPR007337~KEGG: lba:Lebu_0151 addiction module antitoxin%2C RelB/DinJ family~PFAM: RelB antitoxin~SPTR: C7ND10 Addiction module antitoxin%2C RelB/DinJ family~TIGRFAM: addiction module antitoxin%2C RelB/DinJ family~PFAM: RelB antitoxin~TIGRFAM: addiction module antitoxin%2C RelB/DinJ family gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0466 Arch_0467 Arch_0467 Arch_0467 548946 549215 + addiction module toxin%2C Txe/YoeB family COGs: COG4115 conserved hypothetical protein~InterPro IPR009614~KEGG: dhd:Dhaf_2026 addiction module toxin%2C Txe/YoeB family~PFAM: Addiction module toxin Txe/YoeB~SPTR: C4G508 Putative uncharacterized protein~TIGRFAM: addiction module toxin%2C Txe/YoeB family~PFAM: Plasmid encoded toxin Txe~TIGRFAM: toxin-antitoxin system%2C toxin component%2C Txe/YoeB family gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0467 Arch_0468 Arch_0468 Arch_0468 549333 550232 - acyl-CoA thioesterase COGs: COG1946 Acyl-CoA thioesterase~InterPro IPR003703~KEGG: bcv:Bcav_2638 palmitoyl-CoA hydrolase~PFAM: acyl-CoA thioesterase~SPTR: D0WRE2 Acyl-CoA thioesterase II~PFAM: Acyl-CoA thioesterase~TIGRFAM: acyl-CoA thioesterase II gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0468 Arch_0469 Arch_0469 Arch_0469 550472 552613 + 4-alpha-glucanotransferase COGs: COG1640 4-alpha-glucanotransferase~InterPro IPR013781:IPR003385:IPR017853~KEGG: bcv:Bcav_2633 4-alpha-glucanotransferase~PFAM: glycoside hydrolase family 77~PRIAM: 4-alpha-glucanotransferase~SPTR: D0WRE1 4-alpha-glucanotransferase~TIGRFAM: 4-alpha-glucanotransferase~PFAM: 4-alpha-glucanotransferase~TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase%2C Streptococcus agalactiae type%3B 4-alpha-glucanotransferase gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0469 Arch_0470 Arch_0470 Arch_0470 552676 552915 + phosphotransferase system PTS EIIB protein InterPro IPR001996~KEGG: cai:Caci_8113 phosphotransferase system PTS EIIB protein~SPTR: C7QIN6 Phosphotransferase system PTS EIIB protein gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0470 Arch_0471 Arch_0471 Arch_0471 552902 554107 - sodium:dicarboxylate symporter COGs: COG1301 Na+/H+-dicarboxylate symporter~InterPro IPR001991~KEGG: bfa:Bfae_09780 Na+/H+ dicarboxylate symporter~PFAM: sodium:dicarboxylate symporter~SPTR: C0VZC5 DAACS family dicarboxylate/amino acid:cation Na+ or H+ symporter~PFAM: Sodium:dicarboxylate symporter family gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0471 Arch_0472 Arch_0472 Arch_0472 554393 555169 - formate/nitrite transporter COGs: COG2116 Formate/nitrite family of transporter~InterPro IPR000292~KEGG: jde:Jden_2227 formate/nitrite transporter~PFAM: formate/nitrite transporter~SPTR: C0VY37 FNT family formate-nitrite transporter~PFAM: Formate/nitrite transporter~TIGRFAM: formate/nitrite transporter gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0472 Arch_0473 Arch_0473 Arch_0473 555237 557783 - aminopeptidase N COGs: COG0308 Aminopeptidase N~InterPro IPR014782:IPR012778~KEGG: bcv:Bcav_2630 aminopeptidase N~PFAM: Peptidase M1 membrane alanine aminopeptidase~SPTR: D0WRD5 Aminopeptidase~TIGRFAM: aminopeptidase N~PFAM: Domain of unknown function (DUF3358)%3B Peptidase family M1~TIGRFAM: aminopeptidase N%2C Streptomyces lividans type gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0473 Arch_0474 Arch_0474 Arch_0474 558199 560199 - Endothelin-converting enzyme 1 COGs: COG3590 metalloendopeptidase~InterPro IPR018497:IPR008753~KEGG: xce:Xcel_1104 neprilysin~PFAM: peptidase M13%3B Peptidase M13%2C neprilysin-like~PRIAM: Endothelin-converting enzyme 1~SPTR: D1BJV6 Endothelin-converting enzyme~PFAM: Peptidase family M13 gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0474 Arch_0475 Arch_0475 Arch_0475 560236 560679 + ribose 5-phosphate isomerase COGs: COG0698 Ribose 5-phosphate isomerase RpiB~InterPro IPR003500:IPR011860~KEGG: bcv:Bcav_2620 ribose 5-phosphate isomerase~PFAM: Ribose/galactose isomerase~SPTR: D1BJV4 Ribose 5-phosphate isomerase~TIGRFAM: ribose 5-phosphate isomerase%3B sugar-phosphate isomerase%2C RpiB/LacA/LacB family~manually curated~PFAM: Ribose/Galactose Isomerase~TIGRFAM: ribose 5-phosphate isomerase%3B sugar-phosphate isomerases%2C RpiB/LacA/LacB family gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0475 Arch_0476 Arch_0476 Arch_0476 560692 561273 - serine O-acetyltransferase COGs: COG1045 Serine acetyltransferase~InterPro IPR018357:IPR001451:IPR005881:IPR011004~KEGG: mlu:Mlut_09440 serine O-acetyltransferase~SPTR: D0WRD0 Serine O-acetyltransferase~TIGRFAM: serine O-acetyltransferase~PFAM: Serine acetyltransferase%2C N-terminal~TIGRFAM: serine O-acetyltransferase gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0476 Arch_0477 Arch_0477 Arch_0477 561295 562221 - cysteine synthase COGs: COG0031 Cysteine synthase~InterPro IPR001216:IPR001926:IPR005856:IPR005859~KEGG: xce:Xcel_1111 cysteine synthase A~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit~SPTR: D0WRC9 Cysteine synthase A~TIGRFAM: cysteine synthase%3B cysteine synthase A~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: cysteine synthase A%3B cysteine synthases gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0477 Arch_0478 Arch_0478 Arch_0478 562323 562976 - protein of unknown function UPF0029 COGs: COG1739 conserved hypothetical protein~InterPro IPR020569:IPR001498:IPR015269:IPR020568~KEGG: cur:cur_1185 hypothetical protein~PFAM: protein of unknown function UPF0029%3B Domain of unknown function DUF1949~SPTR: D0WRC8 IMPACT family member YigZ~PFAM: Uncharacterized protein family UPF0029~TIGRFAM: conserved hypothetical protein TIGR00257 gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0478 Arch_0479 Arch_0479 Arch_0479 563136 563300 + ribosomal protein L32 InterPro IPR002677~KEGG: cur:cur_0544 50S ribosomal protein L32~PFAM: ribosomal L32p protein~SPTR: D0WRC7 Ribosomal protein L32~TIGRFAM: ribosomal protein L32~PFAM: Ribosomal L32p protein family~TIGRFAM: ribosomal protein L32 gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0479 Arch_0480 Arch_0480 Arch_0480 563505 564137 + hypothetical protein KEGG: kko:Kkor_1729 hypothetical protein~SPTR: C7RCZ9 Putative uncharacterized protein gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0480 Arch_0481 Arch_0481 Arch_0481 564166 565161 + hypothetical protein InterPro IPR011040~KEGG: cti:RALTA_A0551 conserved hypothetical protein%2C 4Fe-4S cluster binding motif~SPTR: A7BBY7 Putative uncharacterized protein gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0481 Arch_0482 Arch_0482 Arch_0482 565138 566001 - ABC-3 protein COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components~InterPro IPR001626~KEGG: cdi:DIP0441 hypothetical protein~PFAM: ABC-3 protein~SPTR: C0W5N9 ABC superfamily ATP binding cassette transporter%2C permease protein~PFAM: ABC 3 transport family gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0482 Arch_0483 Arch_0483 Arch_0483 565998 566720 - ABC transporter related protein COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component~InterPro IPR017871:IPR003439:IPR003593~KEGG: stp:Strop_2035 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C0W5P0 ABC superfamily ATP binding cassette transporter%2C ABC protein~PFAM: ABC transporter gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0483 Arch_0484 Arch_0484 Arch_0484 566717 567652 - conserved hypothetical protein KEGG: cdi:DIP0439 hypothetical protein~SPTR: C0W5P1 Putative uncharacterized protein gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0484 Arch_0485 Arch_0485 Arch_0485 567649 569205 - periplasmic solute binding protein COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin~InterPro IPR006129:IPR006128:IPR006127~KEGG: pac:PPA1501 periplasmic solute binding protein~PFAM: periplasmic solute binding protein~SPTR: C0W5P2 ABC superfamily ATP binding cassette transporter%2C solute binding protein~PFAM: Periplasmic solute binding protein family gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0485 Arch_0486 Arch_0486 Arch_0486 569550 571907 + carbon starvation protein CstA COGs: COG1966 Carbon starvation protein predicted membrane protein~InterPro IPR003706~KEGG: krh:KRH_18870 carbon starvation protein~PFAM: carbon starvation protein CstA~SPTR: D0WP83 Carbon starvation protein A~PFAM: Carbon starvation protein CstA gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0486 Arch_0487 Arch_0487 Arch_0487 572054 572254 + protein of unknown function DUF466 InterPro IPR007423~KEGG: mlu:Mlut_08620 uncharacterized small protein~PFAM: protein of unknown function DUF466~SPTR: D0WP82 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF466) gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0487 Arch_0488 Arch_0488 Arch_0488 572372 573196 - 2%2C5-didehydrogluconate reductase COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase~InterPro IPR001395:IPR018170:IPR020471~KEGG: krh:KRH_00260 2%2C5-diketo-D-gluconic acid reductase~PFAM: aldo/keto reductase~PRIAM: 2%2C5-didehydrogluconate reductase~SPTR: P06632 2%2C5-diketo-D-gluconic acid reductase A~PFAM: Aldo/keto reductase family gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0488 Arch_0489 Arch_0489 Arch_0489 573506 573799 - conserved hypothetical protein KEGG: sen:SACE_0448 hypothetical protein~SPTR: A4F6X2 Putative uncharacterized protein gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0489 Arch_0490 Arch_0490 Arch_0490 573842 574141 - transcriptional regulator%2C ArsR family InterPro IPR011991:IPR001845~KEGG: cms:CMS_0559 ArsR family transcriptional regulator~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR~SPTR: B0RD80 Putative ArsR-family transcriptional regulator~PFAM: Bacterial regulatory protein%2C arsR family gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0490 Arch_0491 Arch_0491 Arch_0491 574342 575010 - deoxynucleoside kinase COGs: COG1428 Deoxynucleoside kinase~InterPro IPR002624~KEGG: cbt:CLH_1831 deoxyguanosIne kinase~PFAM: deoxynucleoside kinase~SPTR: A8U7A9 Deoxynucleoside kinase family protein~PFAM: Deoxynucleoside kinase gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0491 Arch_0492 Arch_0492 Arch_0492 575164 576282 - C4-dicarboxylate transporter/malic acid transport protein COGs: COG1275 Tellurite resistance protein and related permease~InterPro IPR004695~KEGG: krh:KRH_19610 TDT family transporter~PFAM: C4-dicarboxylate transporter/malic acid transport protein~SPTR: B2GGJ2 Putative TDT family transporter~manually curated~PFAM: C4-dicarboxylate transporter/malic acid transport protein gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0492 Arch_0493 Arch_0493 Arch_0493 576308 576817 - molybdopterin binding domain protein COGs: COG0521 Molybdopterin biosynthesis protein~InterPro IPR001453:IPR008284~KEGG: tfu:Tfu_0376 molybdopterin adenylyltransferase~PFAM: molybdopterin binding domain~SPTR: Q47T03 Molybdopterin adenylyltransferase~PFAM: Probable molybdopterin binding domain gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0493 Arch_0494 Arch_0494 Arch_0494 577023 578423 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: pac:PPA0604 putative sugar binding protein~PFAM: extracellular solute-binding protein family 1~SPTR: A7B9K4 Putative uncharacterized protein~PFAM: Bacterial extracellular solute-binding protein gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0494 Arch_0495 Arch_0495 Arch_0495 578495 579442 + binding-protein-dependent transport systems inner membrane component COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: lxx:Lxx23450 ABC transporter%2C permease protein~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: A7B9K3 Putative uncharacterized protein~PFAM: Binding-protein-dependent transport system inner membrane component gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0495 Arch_0496 Arch_0496 Arch_0496 579448 580377 + binding-protein-dependent transport systems inner membrane component COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: pac:PPA0606 putative transport system permease protein~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: Q6AA54 Putative transport system permease protein~PFAM: Binding-protein-dependent transport system inner membrane component gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0496 Arch_0497 Arch_0497 Arch_0497 580390 581757 + glycoside hydrolase family 29 (alpha-L-fucosidase) COGs: COG3669 Alpha-L-fucosidase~InterPro IPR013781:IPR000933:IPR017853:IPR016286~KEGG: pac:PPA0607 glycosyl hydrolase%2C putative alpha-L-fucosidase~PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase)~SMART: glycoside hydrolase family 29 (alpha-L-fucosidase)~SPTR: Q6AA53 Glycosyl hydrolase%2C putative alpha-L-fucosidase~PFAM: Alpha-L-fucosidase gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0497 Arch_0498 Arch_0498 Arch_0498 581779 581961 + AAA ATPase KEGG: mjl:Mjls_0867 AAA ATPase~SPTR: Q1BDQ7 ATPas gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0498 Arch_0499 Arch_0499 Arch_0499 582008 582247 + hypothetical protein KEGG: rlt:Rleg2_1061 hypothetical protein~SPTR: D0YT67 AAA ATPase gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0499 Arch_0500 Arch_0500 Arch_0500 582339 582605 - hypothetical protein KEGG: tcu:Tcur_4129 phosphoenolpyruvate carboxylase~SPTR: D1A204 Phosphoenolpyruvate carboxylase gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0500 Arch_0501 Arch_0501 Arch_0501 582737 585199 + conserved hypothetical protein KEGG: hypothetical protein~SPTR: C1FFK9 Predicted protein gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0501 Arch_0502 Arch_0502 Arch_0502 585380 585659 + pseudogene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0502 Arch_0503 Arch_0503 Arch_0503 585896 586537 + type III restriction system methylase InterPro IPR002296~KEGG: ajs:Ajs_0195 type III restriction system methylase~SPTR: C0W730 Type III restriction system methylase~PFAM: N-6 DNA Methylase gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0503 Arch_0504 Arch_0504 Arch_0504 586540 588159 + Site-specific DNA-methyltransferase (adenine-specific) InterPro IPR002052:IPR002296:IPR011639~KEGG: dol:Dole_0904 site-specific DNA-methyltransferase (adenine-specific)~PFAM: Eco57I restriction endonuclease~PRIAM: Site-specific DNA-methyltransferase (adenine-specific)~SPTR: C0W729 Type III restriction system endonuclease~PFAM: Eco57I restriction endonuclease gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0504 Arch_0505 Arch_0505 Arch_0505 588159 590732 + conserved hypothetical protein KEGG: cpb:Cphamn1_0745 hypothetical protein~SPTR: C0W728 Type III restriction system endonuclease~PFAM: Type III restriction enzyme%2C res subunit~TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase%2C Streptococcus agalactiae type gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0505 Arch_0506 Arch_0506 Arch_0506 590981 591276 + pseudogene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0506 Arch_0507 Arch_0507 Arch_0507 591348 592202 + Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR001584:IPR012337~KEGG: cur:cur_1459 transposase for insertion sequence~PFAM: Integrase catalytic region~SPTR: B1VGV7 Transposase for insertion sequence~PFAM: Integrase core domain gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0507 Arch_0508 Arch_0508 Arch_0508 592310 593605 - hypothetical protein InterPro IPR016196~KEGG: tte:TTE2456 major facilitator superfamily permease~SPTR: Q8R7F6 Permeases of the major facilitator superfamily gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0508 Arch_0509 Arch_0509 Arch_0509 594179 595259 - pseudogene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0509 Arch_0510 Arch_0510 Arch_0510 595509 596531 + pseudogene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0510 Arch_0511 Arch_0511 Arch_0511 596522 596976 + pseudogene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0511 Arch_0512 Arch_0512 Arch_0512 597116 597469 + HNH endonuclease InterPro IPR002711:IPR003615~KEGG: cdi:DIP2153 putative bacteriophage holin protein~PFAM: HNH endonuclease~SMART: HNH nuclease~SPTR: C2KNY6 Possible bacteriophage endonuclease~PFAM: HNH endonuclease gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0512 Arch_0513 Arch_0513 Arch_0513 597850 598170 + hypothetical protein KEGG: pac:PPA1591 hypothetical protein~SPTR: Q6A7D5 Conserved protein gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0513 Arch_0514 Arch_0514 Arch_0514 598328 599239 - hypothetical protein KEGG: cms:CMS_0575 hypothetical protein~SPTR: B0RD96 Putative membrane protein gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0514 Arch_0515 Arch_0515 Arch_0515 599580 600203 - hypothetical protein KEGG: shw:Sputw3181_1204 nucleoside recognition domain-containing protein~SPTR: Q1ZIG2 Membrane protein%2C putative gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0515 Arch_0516 Arch_0516 Arch_0516 600264 600836 + conserved hypothetical protein KEGG: pac:PPA1589 hypothetical protein~SPTR: C2KNY1 Putative uncharacterized protein~PFAM: Phage terminase%2C small subunit gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0516 Arch_0517 Arch_0517 Arch_0517 600916 601776 + Methionine adenosyltransferase COGs: COG0192 S-adenosylmethionine synthetase~InterPro IPR001412:IPR002133~KEGG: pac:PPA1587 S-adenosylmethionine synthetase~PFAM: S-adenosylmethionine synthetase~PRIAM: Methionine adenosyltransferase~SPTR: C2KNY0 S-adenosylmethionine synthetase~PFAM: S-adenosylmethionine synthetase%2C C-terminal domain%3B S-adenosylmethionine synthetase%2C central domain%3B S-adenosylmethionine synthetase%2C N-terminal domain~TIGRFAM: S-adenosylmethionine synthetase gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0517 Arch_0518 Arch_0518 Arch_0518 601766 602257 + hypothetical protein KEGG: bcm:Bcenmc03_2420 excinuclease ABC subunit C~SPTR: B1JWQ1 Excinuclease ABC C subunit domain protein gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0518 Arch_0519 Arch_0519 Arch_0519 602229 603479 + DNA methylase N-4/N-6 domain protein COGs: COG0863 DNA modification methylase~InterProIPR002052:IPR002295:IPR003115:IPR002941:IPR 015840~KEGG: pac:PPA1586 ParB family DNA methylase~PFAM: DNA methylase N-4/N-6 domain protein%3B ParB domain protein nuclease~SMART: ParB domain protein nuclease~SPTR: C2KNX9 ParB family DNA methylase~manually curated~PFAM: ParB-like nuclease domain%3B DNA methylase gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0519 Arch_0520 Arch_0520 Arch_0520 603583 603870 + conserved hypothetical protein KEGG: pac:PPA1583 hypothetical protein~SPTR: C2KNX5 Putative uncharacterized protein gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0520 Arch_0521 Arch_0521 Arch_0521 603897 605504 + Terminase COGs: COG4626 Phage terminase-like protein large subunit~InterPro IPR005021~KEGG: cce:Ccel_2837 terminase~PFAM: Terminase~SPTR: C2KNX4 Phage terminase~PFAM: Phage Terminase gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0521 Arch_0522 Arch_0522 Arch_0522 605564 606295 - hypothetical protein KEGG: Os01g0932600%3B hypothetical protein~SPTR: Q5JMG9 Os01g0932600 protein~PFAM: Protein of unknown function (DUF1643) gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0522 Arch_0523 Arch_0523 Arch_0523 606330 607079 + portal protein COGs: COG4695 Phage-related protein~InterPro IPR006944~KEGG: tex:Teth514_1252 HK97 family phage portal protein~PFAM: portal protein~SPTR: C2KNX2 HK97 family portal protein~PFAM: Phage portal protein~TIGRFAM: phage portal protein%2C HK97 family gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0523 Arch_0524 Arch_0524 Arch_0524 607269 608066 + hypothetical protein KEGG: cgb:cg1911 putative secreted protein~SPTR: B6XSG0 Putative uncharacterized protein gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0524 Arch_0525 Arch_0525 Arch_0525 608096 608215 + hypothetical protein gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0525 Arch_0526 Arch_0526 Arch_0526 608306 608965 - two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterProIPR011991:IPR001789:IPR013249:IPR000792:IPR 011006~KEGG: kra:Krad_4263 two component transcriptional regulator%2C LuxR family~PFAM: response regulator receiver%3B Sigma-70 region 4 type 2~SMART: response regulator receiver%3B regulatory protein LuxR~SPTR: D0YQC0 Two component LuxR family transcriptional regulator~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0526 Arch_0527 Arch_0527 Arch_0527 608973 610103 - putative signal transduction histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR003594~KEGG: cai:Caci_0638 histidine kinase~PFAM: ATP-binding region ATPase domain protein~SPTR: C2KNP1 Histidine kinase gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0527 Arch_0528 Arch_0528 Arch_0528 610090 610299 - hypothetical protein KEGG: oan:Oant_1198 BioY protein gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0528 Arch_0529 Arch_0529 Arch_0529 611003 611680 - two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterProIPR011991:IPR000792:IPR001789:IPR011006:IPR 016032~KEGG: ckp:ckrop_0504 two-component system%2C response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: regulatory protein LuxR%3B response regulator receiver~SPTR: D0WNH1 Two-component system response regulator~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0529 Arch_0530 Arch_0530 Arch_0530 611685 612413 - histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR011712:IPR003594~KEGG: kse:Ksed_07210 histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase dimerisation and phosphoacceptor region~SPTR: D0WNH3 Sensor histidine kinase~manually curated~PFAM: Histidine kinase%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0530 Arch_0531 Arch_0531 Arch_0531 612720 613424 + ABC transporter related protein COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR017871:IPR003439:IPR003593~KEGG: kse:Ksed_07200 ABC-type antimicrobial peptide transport system%2C ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0WNH4 Lipoprotein releasing system%2C ATP-binding protein LolD~PFAM: ABC transporter gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0531 Arch_0532 Arch_0532 Arch_0532 613421 614815 + protein of unknown function DUF214 InterPro IPR003838~KEGG: kse:Ksed_07190 predicted permease~PFAM: protein of unknown function DUF214~SPTR: D0WNH5 Putative permease domain protein~PFAM: Predicted permease gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0532 Arch_0533 Arch_0533 Arch_0533 614830 615177 - hypothetical protein KEGG: cjk:jk1223 hypothetical protein~SPTR: C0XR15 Putative uncharacterized protein gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0533 Arch_0534 Arch_0534 Arch_0534 615699 616386 + pseudogene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0534 Arch_0535 Arch_0535 Arch_0535 616383 617438 - cobalamin synthesis CobW domain protein KEGG: nml:Namu_3858 cobalamin synthesis CobW domain protein~SPTR: D1BFN4 Predicted GTPase%2C G3E family~PFAM: Cobalamin synthesis protein cobW C-terminal domain gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0535 Arch_0536 Arch_0536 Arch_0536 617534 617839 + ribosomal protein S14 COGs: COG0199 Ribosomal protein S14~InterPro IPR001209~KEGG: gbr:Gbro_1466 ribosomal protein S14~PFAM: ribosomal protein S14~SPTR: D0L6I7 Ribosomal protein S14~PFAM: Ribosomal protein S14p/S29e gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0536 Arch_0537 Arch_0537 Arch_0537 617855 617977 + ribosomal protein L36 InterPro IPR000473~KEGG: rop:ROP_04730 putative 50S ribosomal protein L36~PFAM: ribosomal protein L36~SPTR: C1ARP3 50S ribosomal protein L36~TIGRFAM: ribosomal protein L36~manually curated~PFAM: Ribosomal protein L36~TIGRFAM: ribosomal protein L36%2C bacterial type gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0537 Arch_0538 Arch_0538 Arch_0538 617977 618210 + ribosomal protein L28 COGs: COG0227 Ribosomal protein L28~InterPro IPR001383~KEGG: kra:Krad_0287 ribosomal protein L28~PFAM: ribosomal protein L28~SPTR: C2AMB1 LSU ribosomal protein L28P~TIGRFAM: ribosomal protein L28~PFAM: Ribosomal L28 family~TIGRFAM: ribosomal protein L28 gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0538 Arch_0539 Arch_0539 Arch_0539 618218 618385 + ribosomal protein L33 COGs: COG0267 Ribosomal protein L33~InterPro IPR018264:IPR001705~KEGG: cmi:CMM_2936 50S ribosomal protein L33~PFAM: ribosomal protein L33~SPTR: A4AEQ3 50S ribosomal protein L33~TIGRFAM: ribosomal protein L33~PFAM: Ribosomal protein L33~TIGRFAM: ribosomal protein L33%2C bacterial type gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0539 Arch_0540 Arch_0540 Arch_0540 619843 621381 + trigger factor COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)~InterPro IPR008881:IPR001179:IPR008880:IPR005215~KEGG: ach:Achl_2160 trigger factor~PFAM: trigger factor domain%3B peptidylprolyl isomerase FKBP-type%3B trigger factor domain protein~SPTR: D0WRB0 Trigger factor~TIGRFAM: trigger factor~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase%3B Bacterial trigger factor protein (TF)%3B Bacterial trigger factor protein (TF) C-terminus~TIGRFAM: trigger factor gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0540 Arch_0541 Arch_0541 Arch_0541 621517 622233 + Endopeptidase Clp COGs: COG0740 Protease subunit of ATP-dependent Clp protease~InterPro IPR018215:IPR001907~KEGG: bcv:Bcav_2598 endopeptidase Clp~PFAM: peptidase S14 ClpP~PRIAM: Endopeptidase Clp~SPTR: A7BDW4 ATP-dependent Clp protease proteolytic subunit~PFAM: Clp protease~TIGRFAM: ATP-dependent Clp protease%2C proteolytic subunit ClpP gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0541 Arch_0542 Arch_0542 Arch_0542 622248 622928 + Endopeptidase Clp COGs: COG0740 Protease subunit of ATP-dependent Clp protease~InterPro IPR018215:IPR001907~KEGG: bfa:Bfae_09560 ATP-dependent Clp protease proteolytic subunit ClpP~PFAM: peptidase S14 ClpP~PRIAM: Endopeptidase Clp~SPTR: D0WRA8 Clp protease~PFAM: Clp protease~TIGRFAM: ATP-dependent Clp protease%2C proteolytic subunit ClpP gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0542 Arch_0543 Arch_0543 Arch_0543 623093 624361 + ATP-dependent Clp protease%2C ATP-binding subunit ClpX COGs: COG1219 ATP-dependent protease Clp ATPase subunit~InterProIPR010603:IPR013093:IPR019489:IPR004487:IPR 003593~KEGG: jde:Jden_0957 ATP-dependent Clp protease%2C ATP-binding subunit ClpX~PFAM: ATPase AAA-2 domain protein%3B zinc finger C4 domain protein%3B Clp ATPase-like~SMART: AAA ATPase~SPTR: D0WRA7 ATP-dependent Clp protease%2C ATP-binding subunit ClpX~TIGRFAM: ATP-dependent Clp protease%2C ATP-binding subunit ClpX~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B ClpX C4-type zinc finger~TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0543 Arch_0544 Arch_0544 Arch_0544 624419 625414 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR013838:IPR000843:IPR001761:IPR010982~KEGG: rop:ROP_52910 putative LacI family transcriptional regulator~PFAM: periplasmic binding protein/LacI transcriptional regulator~SMART: regulatory protein LacI~SPTR: A7BCA6 Putative uncharacterized protein~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0544 Arch_0545 Arch_0545 Arch_0545 625620 627020 + major facilitator superfamily MFS_1 COGs: COG2271 Sugar phosphate permease~InterPro IPR011701:IPR016196~KEGG: esi:Exig_2601 sugar phosphate antiporter~PFAM: major facilitator superfamily MFS_1~SPTR: A7BCA4 Putative uncharacterized protein~PFAM: Major Facilitator Superfamily gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0545 Arch_0546 Arch_0546 Arch_0546 627048 627827 + inositol monophosphatase COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family~InterPro IPR000760~KEGG: lin:lin1054 hypothetical protein~PFAM: inositol monophosphatase~SPTR: A7BCA5 Putative uncharacterized protein~PFAM: Inositol monophosphatase family gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0546 Arch_0547 Arch_0547 Arch_0547 627904 629730 - AMP-dependent synthetase and ligase COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming)~InterPro IPR020845:IPR000873~KEGG: jde:Jden_0962 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase and ligase~SPTR: D0WRA5 Putative CoA ligase~PFAM: AMP-binding enzyme gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0547 Arch_0548 Arch_0548 Arch_0548 629831 630232 - hypothetical protein KEGG: bfa:Bfae_03100 predicted membrane protein~SPTR: C7MGJ5 Predicted membrane protein gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0548 Arch_0549 Arch_0549 Arch_0549 630316 632988 - tRNA synthetase valyl/leucyl anticodon-binding protein COGs: COG0525 Valyl-tRNA synthetase~InterProIPR014729:IPR001412:IPR019754:IPR002300:IPR 013155:IPR009008:IPR009080~KEGG: xce:Xcel_1125 tRNA synthetase valyl/leucyl anticodon-binding protein~PFAM: tRNA synthetase valyl/leucyl anticodon-binding%3B aminoacyl-tRNA synthetase class Ia~SPTR: D0WRA4 Valyl-tRNA synthetase~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B Anticodon-binding domain gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0549 Arch_0550 Arch_0550 Arch_0550 633087 633721 - pseudogene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0550 Arch_0551 Arch_0551 Arch_0551 633887 635560 - ABC transporter related protein COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterPro IPR003439:IPR017940:IPR003593:IPR011527~KEGG: pac:PPA0784 ABC-type transport system%2C fused ATPase and permease~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0WRL0 ABC-type transport system%2C fused ATPase and permease~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0551 Arch_0552 Arch_0552 Arch_0552 635557 637260 - ABC transporter related protein COGs: COG4988 ABC-type transport system involved in cytochrome bd biosynthesis ATPase and permease components~InterProIPR017871:IPR003439:IPR017940:IPR003593:IPR 011527~KEGG: pac:PPA0783 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0WRL1 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0552 Arch_0553 Arch_0553 Arch_0553 637839 641018 + isoleucyl-tRNA synthetase COGs: COG0060 Isoleucyl-tRNA synthetase~InterProIPR014729:IPR001412:IPR015905:IPR002300:IPR 013155:IPR002301:IPR009080:IPR009008~KEGG: jde:Jden_0970 isoleucyl-tRNA synthetase~PFAM: aminoacyl-tRNA synthetase class Ia%3B tRNA synthetase valyl/leucyl anticodon-binding~SPTR: C0W164 Isoleucine--tRNA ligase~TIGRFAM: isoleucyl-tRNA synthetase~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B Anticodon-binding domain~TIGRFAM: isoleucyl-tRNA synthetase gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0553 Arch_0554 Arch_0554 Arch_0554 641019 642536 + FolC bifunctional protein COGs: COG0285 Folylpolyglutamate synthase~InterPro IPR013221:IPR004101:IPR018109:IPR001645~KEGG: bcv:Bcav_2567 FolC bifunctional protein~PFAM: cytoplasmic peptidoglycan synthetase domain protein%3B Mur ligase middle domain protein~PRIAM: Tetrahydrofolate synthase~SPTR: D0WR93 Tetrahydrofolate synthase~TIGRFAM: FolC bifunctional protein~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase middle domain~TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0554 Arch_0555 Arch_0555 Arch_0555 642536 642952 + Nucleoside-diphosphate kinase COGs: COG0105 Nucleoside diphosphate kinase~InterPro IPR001564~KEGG: krh:KRH_11260 nucleoside diphosphate kinase~PFAM: nucleoside diphosphate kinase~PRIAM: Nucleoside-diphosphate kinase~SMART: nucleoside diphosphate kinase~SPTR: C0W772 Nucleoside-diphosphate kinase~PFAM: Nucleoside diphosphate kinase gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0555 Arch_0556 Arch_0556 Arch_0556 642952 643560 + dihydroxyacetone kinase%2C L subunit COGs: COG2376 Dihydroxyacetone kinase~InterPro IPR004007:IPR012737~KEGG: car:cauri_1454 dihydroxyacetone kinase~PFAM: Dak phosphatase~SPTR: A7BCU2 Putative uncharacterized protein~TIGRFAM: dihydroxyacetone kinase%2C L subunit~PFAM: DAK2 domain~TIGRFAM: dihydroxyacetone kinase%2C phosphoprotein-dependent%2C L subunit gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0556 Arch_0557 Arch_0557 Arch_0557 643566 647120 + chromosome segregation protein SMC COGs: COG1196 Chromosome segregation ATPase~InterPro IPR003395:IPR010935:IPR011890~KEGG: bcv:Bcav_2550 chromosome segregation protein SMC~PFAM: SMC domain protein%3B SMCs flexible hinge domain protein~SPTR: D0WR83 Smc protein~TIGRFAM: chromosome segregation protein SMC~PFAM: RecF/RecN/SMC N terminal domain%3B SMC proteins Flexible Hinge Domain~TIGRFAM: chromosome segregation protein SMC%2C common bacterial type gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0557 Arch_0558 Arch_0558 Arch_0558 647184 647522 + hypothetical protein KEGG: SORBIDRAFT_08g000780%3B hypothetical protein~SPTR: D0WR82 Putative uncharacterized protein gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0558 Arch_0559 Arch_0559 Arch_0559 647569 648756 + signal recognition particle-docking protein FtsY COGs: COG0552 Signal recognition particle GTPase~InterPro IPR013822:IPR000897:IPR004390:IPR003593~KEGG: bcv:Bcav_2548 signal recognition particle-docking protein FtsY~PFAM: GTP-binding signal recognition particle SRP54 G- domain%3B GTP-binding signal recognition particle SRP54 helical bundle~SMART: AAA ATPase~SPTR: D0WR81 Signal recognition particle-docking protein FtsY~TIGRFAM: signal recognition particle-docking protein FtsY~PFAM: SRP54-type protein%2C GTPase domain%3B SRP54-type protein%2C helical bundle domain~TIGRFAM: signal recognition particle-docking protein FtsY gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0559 Arch_0560 Arch_0560 Arch_0560 648808 650349 + signal recognition particle protein COGs: COG0541 Signal recognition particle GTPase~InterProIPR013822:IPR004125:IPR000897:IPR004780:IPR 003593~KEGG: bcv:Bcav_2543 signal recognition particle protein~PFAM: GTP-binding signal recognition particle SRP54 G- domain%3B GTP-binding signal recognition particle SRP54 helical bundle%3B Signal peptide binding (SRP54) M- domain protein~SMART: AAA ATPase~SPTR: Q8VVP8 Signal recognition particle protein subunit~TIGRFAM: signal recognition particle protein~PFAM: SRP54-type protein%2C GTPase domain%3B SRP54-type protein%2C helical bundle domain%3B Signal peptide binding domain~TIGRFAM: signal recognition particle protein gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0560 Arch_0561 Arch_0561 Arch_0561 650365 651438 + amidohydrolase COGs: COG1228 Imidazolonepropionase and related amidohydrolase~InterPro IPR006680~KEGG: jde:Jden_0984 amidohydrolase~PFAM: amidohydrolase~SPTR: Q8VVP7 Putative uncharacterized protein~manually curated gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0561 Arch_0562 Arch_0562 Arch_0562 651539 651928 - hypothetical protein KEGG: bra:BRADO6741 cation efflux pump%2C DNA-damage-inducible protein%3B putative~SPTR: A4Z2G6 Cation efflux pump%2C DNA-damage-inducible protein%3B putative gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0562 Arch_0563 Arch_0563 Arch_0563 651928 652488 - phospholipase A2 InterPro IPR016090:IPR015141~KEGG: nml:Namu_4673 hypothetical protein~PFAM: Prokaryotic phospholipase A2~SPTR: C8RRW9 Secreted protein~PFAM: Prokaryotic phospholipase A2%3B Group XII secretory phospholipase A2 precursor (PLA2G12) gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0563 Arch_0564 Arch_0564 Arch_0564 652972 653875 - pseudogene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0564 Arch_0565 Arch_0565 Arch_0565 653975 654115 - pseudogene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0565 Arch_0566 Arch_0566 Arch_0566 654208 654318 + hypothetical protein gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0566 Arch_0567 Arch_0567 Arch_0567 654702 655646 - cation diffusion facilitator family transporter COGs: COG0053 Co/Zn/Cd cation transporter~InterPro IPR002524~KEGG: bfa:Bfae_07750 cation diffusion facilitator family transporter~PFAM: cation efflux protein~SPTR: C7M9T6 Cation diffusion facilitator family transporter~TIGRFAM: cation diffusion facilitator family transporter~PFAM: Cation efflux family~TIGRFAM: cation diffusion facilitator family transporter gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0567 Arch_0568 Arch_0568 Arch_0568 655941 656372 + ribosomal protein S16 COGs: COG0228 Ribosomal protein S16~InterPro IPR000307:IPR020592~KEGG: bad:BAD_0209 30S ribosomal protein S16~PFAM: ribosomal protein S16~SPTR: A0ZZV7 30S ribosomal protein S16~TIGRFAM: ribosomal protein S16~PFAM: Ribosomal protein S16~TIGRFAM: ribosomal protein S16 gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0568 Arch_0569 Arch_0569 Arch_0569 656372 656608 + RNA-binding protein (KH domain) COGs: COG1837 RNA-binding protein (contains KH domain)~InterPro IPR004088:IPR009019~KEGG: xce:Xcel_1168 RNA-binding protein (KH domain)~SPTR: D0WR64 KH domain protein~PFAM: KH domain gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0569 Arch_0570 Arch_0570 Arch_0570 656675 657208 + 16S rRNA processing protein RimM COGs: COG0806 RimM protein required for 16S rRNA processing~InterPro IPR002676:IPR007903:IPR011961~KEGG: xce:Xcel_1169 16S rRNA processing protein RimM~PFAM: RimM protein%3B PRC-barrel domain protein~SPTR: D0WR63 16S rRNA processing protein RimM~TIGRFAM: 16S rRNA processing protein RimM~PFAM: RimM N-terminal domain~TIGRFAM: 16S rRNA processing protein RimM gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0570 Arch_0571 Arch_0571 Arch_0571 657210 658520 + tRNA (guanine-N1)-methyltransferase COGs: COG0336 tRNA-(guanine-N1)-methyltransferase~InterPro IPR016181:IPR000182:IPR016009:IPR002649~KEGG: bcv:Bcav_2537 tRNA (guanine-N1)-methyltransferase~PFAM: tRNA (guanine-N1-)-methyltransferase%3B GCN5-related N-acetyltransferase~PRIAM: tRNA (guanine-N(1)-)-methyltransferase~SPTR: D0WR62 tRNA (Guanine-N(1)-)-methyltransferase~TIGRFAM: tRNA (guanine-N1)-methyltransferase~PFAM: tRNA (Guanine-1)-methyltransferase%3B Acetyltransferase (GNAT) family~TIGRFAM: tRNA (guanine-N1)-methyltransferase gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0571 Arch_0572 Arch_0572 Arch_0572 658652 659005 + ribosomal protein L19 COGs: COG0335 Ribosomal protein L19~InterPro IPR018257:IPR001857~KEGG: jde:Jden_0989 ribosomal protein L19~PFAM: ribosomal protein L19~SPTR: C7R323 50S ribosomal protein L19~TIGRFAM: ribosomal protein L19~PFAM: Ribosomal protein L19~TIGRFAM: ribosomal protein L19%2C bacterial type gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0572 Arch_0573 Arch_0573 Arch_0573 659194 660024 + signal peptidase I InterProIPR011056:IPR019758:IPR000223:IPR019759:IPR 015927~KEGG: bcv:Bcav_2535 signal peptidase I~PFAM: Peptidase S24/S26A/S26B%2C conserved region~SPTR: D0WR60 Peptidase S26A%2C signal peptidase I~TIGRFAM: signal peptidase I~PFAM: Peptidase S26%3B Peptidase S24-like~TIGRFAM: signal peptidase I%2C bacterial type gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0573 Arch_0574 Arch_0574 Arch_0574 660031 660705 + Ribonuclease H COGs: COG0164 Ribonuclease HII~InterPro IPR001352:IPR012337~KEGG: bcv:Bcav_2534 ribonuclease H~PFAM: ribonuclease HII/HIII~PRIAM: Ribonuclease H~SPTR: D0WR59 Ribonuclease HII~PFAM: Ribonuclease HII gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0574 Arch_0575 Arch_0575 Arch_0575 660718 661029 + Protein of unknown function DUF2469 InterPro IPR019592~KEGG: jde:Jden_0992 hypothetical protein~PFAM: Protein of unknown function DUF2469~SPTR: D0WR58 Putative CTP synthase~PFAM: Protein of unknown function (DUF2469) gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0575 Arch_0576 Arch_0576 Arch_0576 661144 661515 + protein of unknown function UPF0102 COGs: COG0792 endonuclease distantly related to Holliday junction resolvase~InterPro IPR003509:IPR011335~KEGG: bcv:Bcav_2532 protein of unknown function UPF0102~PFAM: protein of unknown function UPF0102~SPTR: C1RMF8 Predicted endonuclease related to Holliday junction resolvase~PFAM: Uncharacterised protein family UPF0102 gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0576 Arch_0577 Arch_0577 Arch_0577 661512 663026 + Mg chelatase%2C subunit ChlI COGs: COG0606 ATPase with chaperone activity~InterProIPR001208:IPR000523:IPR004482:IPR003593:IPR 020568~KEGG: kra:Krad_1408 Mg chelatase%2C subunit ChlI~PFAM: magnesium chelatase ChlI subunit~SMART: AAA ATPase~SPTR: D0WR55 Mg chelatase-like protein~TIGRFAM: Mg chelatase%2C subunit ChlI~PFAM: Magnesium chelatase%2C subunit ChlI%3B Lon protease (S16) C-terminal proteolytic domain~TIGRFAM: Mg chelatase-related protein gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0577 Arch_0578 Arch_0578 Arch_0578 663026 664180 + DNA protecting protein DprA COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake~InterPro IPR003488~KEGG: bcv:Bcav_2511 DNA protecting protein DprA~PFAM: SMF family protein~SPTR: D0WR54 DNA protecting protein DprA~TIGRFAM: DNA protecting protein DprA~PFAM: DNA recombination-mediator protein A~TIGRFAM: DNA protecting protein DprA gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0578 Arch_0579 Arch_0579 Arch_0579 664177 665118 + integrase family protein COGs: COG4974 Site-specific recombinase XerD~InterProIPR013762:IPR004107:IPR002104:IPR011010:IPR 010998~KEGG: mgi:Mflv_4135 site-specific tyrosine recombinase XerC~PFAM: integrase family protein%3B integrase domain protein SAM domain protein~SPTR: D0WR53 Integrase/recombinase XerC~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0579 Arch_0580 Arch_0580 Arch_0580 665375 667297 + peptidase S8 and S53 subtilisin kexin sedolisin COGs: COG1404 Subtilisin-like serine protease~InterPro IPR000209:IPR014877~KEGG: pac:PPA0598 serine protease~PFAM: peptidase S8 and S53 subtilisin kexin sedolisin%3B Exportin 1-like~SPTR: Q6AA63 Serine protease%2C subtilase family~PFAM: Subtilase family gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0580 Arch_0581 Arch_0581 Arch_0581 667320 667859 + hypothetical protein KEGG: krh:KRH_16080 hypothetical protein~SPTR: B2GKR9 Putative uncharacterized protein gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0581 Arch_0582 Arch_0582 Arch_0582 667964 668524 - Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR016047:IPR011055~KEGG: bcv:Bcav_2508 peptidase M23~PFAM: Peptidase M23~SPTR: D0WR50 M23 peptidase domain protein~PFAM: Peptidase family M23 gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0582 Arch_0583 Arch_0583 Arch_0583 668865 669680 + ribosomal protein S2 COGs: COG0052 Ribosomal protein S2~InterPro IPR018130:IPR001865:IPR005706~KEGG: xce:Xcel_1180 ribosomal protein S2~PFAM: ribosomal protein S2~SPTR: C0W045 Ribosomal protein S2~TIGRFAM: ribosomal protein S2~PFAM: Ribosomal protein S2~TIGRFAM: ribosomal protein S2%2C bacterial type gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0583 Arch_0584 Arch_0584 Arch_0584 669711 670577 + translation elongation factor Ts COGs: COG0264 Translation elongation factor Ts~InterProIPR014039:IPR018101:IPR000449:IPR001816:IPR 009060~KEGG: bfa:Bfae_10130 translation elongation factor Ts (EF-Ts)~PFAM: Translation elongation factor EFTs/EF1B dimerisation%3B ubiquitin-associated- domain-containing protein~SPTR: D0WR47 Translation elongation factor Ts~TIGRFAM: translation elongation factor Ts~PFAM: Elongation factor TS~TIGRFAM: translation elongation factor Ts gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0584 Arch_0585 Arch_0585 Arch_0585 670808 671569 + Electron transfer flavoprotein alpha/beta-subunit COGs: COG2086 Electron transfer flavoprotein beta subunit~InterPro IPR014729:IPR014730:IPR012255~KEGG: pac:PPA2214 putative electron transfer flavoprotein (FixA protein)~PFAM: Electron transfer flavoprotein alpha/beta-subunit~SPTR: D0WNZ9 Putative electron transfer flavoprotein~PFAM: Electron transfer flavoprotein domain gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0585 Arch_0586 Arch_0586 Arch_0586 671584 672468 + Electron transfer flavoprotein alpha subunit COGs: COG2025 Electron transfer flavoprotein alpha subunit~InterPro IPR014730:IPR014731:IPR001308~KEGG: pac:PPA2213 putative electron transfer flavoprotein%2C carnitine metabolism (FixB protein)~PFAM: Electron transfer flavoprotein alpha subunit %3B Electron transfer flavoprotein alpha/beta-subunit~SPTR: D0WNZ8 Electron transfer flavoprotein%2C alpha subunit~PFAM: Electron transfer flavoprotein domain%3B Electron transfer flavoprotein FAD-binding domain gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0586 Arch_0587 Arch_0587 Arch_0587 672478 673779 + Electron-transferring-flavoproteindehydrogenase COGs: COG0644 Dehydrogenase (flavoprotein)~InterPro IPR003042:IPR006076~KEGG: pac:PPA2212 putative electron transfer flavoprotein-quinone oxidoreductase (FixC protein)~PFAM: FAD dependent oxidoreductase~PRIAM: Electron-transferring-flavoprotein dehydrogenase~SPTR: D0WNZ7 FixC protein~PFAM: FAD dependent oxidoreductase gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0587 Arch_0588 Arch_0588 Arch_0588 673779 674081 + ferredoxin-like protein COGs: COG2440 Ferredoxin-like protein~InterPro IPR017896:IPR012206~KEGG: pth:PTH_1765 ferredoxin-like protein~SPTR: A7B9C8 Putative uncharacterized protein gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0588 Arch_0589 Arch_0589 Arch_0589 674462 675889 - amino acid permease-associated region COGs: COG1113 Gamma-aminobutyrate permease and related permease~InterPro IPR004840:IPR004841:IPR002293~KEGG: cro:ROD_32621 D-serine/D-alanine/glycine transporter~PFAM: amino acid permease-associated region~SPTR: D1BCC7 Gamma-aminobutyrate permease-like transporter~PFAM: Amino acid permease gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0589 Arch_0590 Arch_0590 Arch_0590 676063 677604 - major facilitator superfamily MFS_1 COGs: COG2814 Arabinose efflux permease~InterPro IPR005829:IPR011701:IPR016196~KEGG: mlu:Mlut_15790 arabinose efflux permease family protein~PFAM: major facilitator superfamily MFS_1~SPTR: C2KMR3 Major facilitator superfamily MFS_1 transporter~PFAM: Major Facilitator Superfamily gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0590 Arch_0591 Arch_0591 Arch_0591 677637 677999 - transcriptional regulator%2C XRE family InterPro IPR001387:IPR010982~KEGG: wpi:WPa_0277 putative transcriptional regulator~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein~SPTR: C5VEB4 Putative uncharacterized protein gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0591 Arch_0592 Arch_0592 Arch_0592 678121 678273 + pseudogene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0592 Arch_0593 Arch_0593 Arch_0593 678366 678470 + hypothetical protein gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0593 Arch_0594 Arch_0594 Arch_0594 678893 679237 + hypothetical protein KEGG: dno:DNO_0609 chromosome segregation SMC family protein~SPTR: C2BRG5 Putative uncharacterized protein gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0594 Arch_0595 Arch_0595 Arch_0595 679479 680099 + hypothetical protein KEGG: hypothetical protein~SPTR: B6B241 Acetylornithine deacetylase (ArgE) gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0595 Arch_0596 Arch_0596 Arch_0596 680164 680595 + hypothetical protein KEGG: gtn:GTNG_1827 sodium:solute symport protein~SPTR: A4IPD3 Probable sodium:solute symport protein gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0596 Arch_0597 Arch_0597 Arch_0597 680703 681898 - pseudogene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0597 Arch_0598 Arch_0598 Arch_0598 681925 682572 - pseudogene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0598 Arch_0599 Arch_0599 Arch_0599 682699 683082 + RNA-binding S4 domain protein COGs: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)~InterPro IPR002942~KEGG: krh:KRH_00910 putative heat shock protein HSP15~PFAM: RNA-binding S4 domain protein~SMART: RNA-binding S4 domain protein~SPTR: D0WKN8 Heat shock protein 15~PFAM: S4 domain gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0599 Arch_0600 Arch_0600 Arch_0600 683119 683859 + uridylate kinase COGs: COG0528 Uridylate kinase~InterPro IPR001048:IPR015963:IPR011817~KEGG: bcv:Bcav_2505 uridylate kinase~PFAM: aspartate/glutamate/uridylate kinase~PRIAM: UMP kinase~SPTR: C0W7B1 UMP kinase~TIGRFAM: uridylate kinase~PFAM: Amino acid kinase family~TIGRFAM: uridylate kinase gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0600 Arch_0601 Arch_0601 Arch_0601 683869 684426 + ribosome recycling factor COGs: COG0233 Ribosome recycling factor~InterPro IPR002661~KEGG: xce:Xcel_1183 ribosome recycling factor~PFAM: ribosome recycling factor~SPTR: D0WR41 Ribosome recycling factor~TIGRFAM: ribosome recycling factor~PFAM: Ribosome recycling factor~TIGRFAM: ribosome recycling factor gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0601 Arch_0602 Arch_0602 Arch_0602 684429 685322 + phosphatidate cytidylyltransferase COGs: COG0575 CDP-diglyceride synthetase~InterPro IPR000374~KEGG: xce:Xcel_1184 phosphatidate cytidylyltransferase~PFAM: phosphatidate cytidylyltransferase~SPTR: D0WR40 Phosphatidate cytidylyltransferase~PFAM: Cytidylyltransferase family gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0602 Arch_0603 Arch_0603 Arch_0603 685360 686640 + radical SAM enzyme%2C Cfr family COGs: COG0820 Fe-S-cluster redox enzyme~InterPro IPR007197:IPR004383~KEGG: mlu:Mlut_21300 radical SAM enzyme%2C Cfr family~PFAM: Radical SAM domain protein~SPTR: D0WR38 Radical SAM enzyme%2C Cfr family~TIGRFAM: radical SAM enzyme%2C Cfr family~PFAM: Radical SAM superfamily~TIGRFAM: radical SAM enzyme%2C Cfr family gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0603 Arch_0604 Arch_0604 Arch_0604 686640 687191 + DivIVA domain repeat protein InterPro IPR019932:IPR019933~KEGG: bcv:Bcav_2501 hypothetical protein~SPTR: D0WR37 DivIVA domain repeat protein~TIGRFAM: DivIVA domain repeat protein%3B DivIVA domain~TIGRFAM: DivIVA domain%3B DivIVA domain repeat protein gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0604 Arch_0605 Arch_0605 Arch_0605 687191 688414 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase~InterPro IPR013512:IPR013644:IPR003821:IPR016040~KEGG: bad:BAD_1158 1-deoxy-D-xylulose 5-phosphate reductoisomerase~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein~PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase~SPTR: D0WR36 1-deoxy-D-xylulose 5-phosphate reductoisomerase~TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase%3B 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal~TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0605 Arch_0606 Arch_0606 Arch_0606 688430 689671 + peptidase M50 COGs: COG0750 membrane-associated Zn-dependent protease 1~InterPro IPR008915:IPR001478~KEGG: bcv:Bcav_2499 peptidase M50~PFAM: peptidase M50~SPTR: D0WR35 Zinc metalloprotease~PFAM: Peptidase family M50~TIGRFAM: RIP metalloprotease RseP gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0606 Arch_0607 Arch_0607 Arch_0607 689701 690861 + 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis~InterPro IPR004588:IPR011005:IPR016425~KEGG: bcv:Bcav_2498 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase~PFAM: IspG family protein~SPTR: C5BWT2 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase~TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase~PFAM: GcpE protein~TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0607 Arch_0608 Arch_0608 Arch_0608 690863 691714 + GCN5-related N-acetyltransferase COGs: COG3393 acetyltransferase~InterPro IPR016181:IPR000182~KEGG: bcv:Bcav_2497 GCN5-related protein N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: D0WR27 Acetyltransferase%2C GNAT family protein~PFAM: Acetyltransferase (GNAT) family gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0608 Arch_0609 Arch_0609 Arch_0609 691811 693598 + prolyl-tRNA synthetase COGs: COG0442 Prolyl-tRNA synthetase~InterProIPR004154:IPR006195:IPR002316:IPR002314:IPR 007214:IPR004500~KEGG: xce:Xcel_1206 prolyl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B YbaK/prolyl-tRNA synthetase associated region%3B Anticodon-binding domain protein~SPTR: D0WR26 Proline--tRNA ligase~TIGRFAM: prolyl-tRNA synthetase~PFAM: YbaK / prolyl-tRNA synthetases associated domain%3B Anticodon binding domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: prolyl-tRNA synthetase%2C family II gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0609 Arch_0610 Arch_0610 Arch_0610 693866 694741 - hypothetical protein KEGG: hypothetical protein~SPTR: D0WR25 Putative uncharacterized protein gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0610 Arch_0611 Arch_0611 Arch_0611 694845 695315 + protein of unknown function DUF150 InterPro IPR003728~KEGG: bcv:Bcav_2492 protein of unknown function DUF150~PFAM: protein of unknown function DUF150~SPTR: D0WR24 Putative uncharacterized protein~PFAM: Uncharacterised BCR%2C YhbC family COG0779 gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0611 Arch_0612 Arch_0612 Arch_0612 695315 696292 + transcription termination factor NusA COGs: COG0195 Transcription elongation factor~InterProIPR013735:IPR012340:IPR015946:IPR004088:IPR 003029:IPR010213:IPR009019:IPR016027~KEGG: krh:KRH_16060 transcription elongation protein NusA~PFAM: NusA domain protein~SPTR: D0WR23 Transcription termination factor NusA~TIGRFAM: transcription termination factor NusA~PFAM: NusA N-terminal domain~TIGRFAM: transcription termination factor NusA gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0612 Arch_0613 Arch_0613 Arch_0613 696409 696711 + protein of unknown function DUF448 COGs: COG2740 nucleic-acid-binding protein implicated in transcription termination~InterPro IPR007393~KEGG: sco:SCO5705 hypothetical protein~PFAM: protein of unknown function DUF448~SPTR: Q9KYR0 Putative uncharacterized protein SCO5705~PFAM: Protein of unknown function (DUF448) gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0613 Arch_0614 Arch_0614 Arch_0614 696826 699741 + translation initiation factor IF-2 COGs: COG0532 Translation initiation factor 2 (IF-2%3B GTPase)~InterProIPR000178:IPR000795:IPR006847:IPR004161:IPR 005225:IPR009000~KEGG: xce:Xcel_1211 translation initiation factor IF-2~PFAM: protein synthesis factor GTP-binding%3B translation initiation factor IF-2 domain protein%3B elongation factor Tu domain 2 protein~SPTR: D0WR21 Translation initiation factor IF-2~TIGRFAM: translation initiation factor IF-2%3B small GTP-binding protein~PFAM: Elongation factor Tu domain 2%3B Translation-initiation factor 2%3B Translation initiation factor IF-2%2C N-terminal region%3B Elongation factor Tu GTP binding domain~TIGRFAM: small GTP-binding protein domain%3B translation initiation factor IF-2 gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0614 Arch_0615 Arch_0615 Arch_0615 699758 700246 + ribosome-binding factor A COGs: COG0858 Ribosome-binding factor A~InterPro IPR015946:IPR020053:IPR000238~KEGG: bfa:Bfae_10330 ribosome-binding factor A~PFAM: ribosome-binding factor A~SPTR: D0WR20 Ribosome-binding factor A~TIGRFAM: ribosome-binding factor A~PFAM: Ribosome-binding factor A~TIGRFAM: ribosome-binding factor A gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0615 Arch_0616 Arch_0616 Arch_0616 700292 701272 + tRNA pseudouridine synthase B COGs: COG0130 Pseudouridine synthase~InterPro IPR002501:IPR014780:IPR020103~KEGG: mva:Mvan_2329 tRNA pseudouridine synthase B~PFAM: pseudouridylate synthase TruB domain protein~SPTR: C0W0C7 Possible tRNA-pseudouridine synthase I~TIGRFAM: tRNA pseudouridine synthase B~PFAM: TruB family pseudouridylate synthase (N terminal domain)~TIGRFAM: tRNA pseudouridine 55 synthase gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0616 Arch_0617 Arch_0617 Arch_0617 701437 703320 + LPXTG-motif cell wall anchor domain protein InterPro IPR005519:IPR019931~KEGG: cai:Caci_5772 acid phosphatase (class B)~PFAM: acid phosphatase (Class B)~SPTR: B5HR56 Secreted protein~TIGRFAM: LPXTG-motif cell wall anchor domain protein~PFAM: HAD superfamily%2C subfamily IIIB (Acid phosphatase)~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0617 Arch_0618 Arch_0618 Arch_0618 703482 704428 + pseudogene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0618 Arch_0619 Arch_0619 Arch_0619 704542 704967 + conserved hypothetical protein KEGG: xce:Xcel_0812 hypothetical protein~SPTR: C2KQ49 Putative uncharacterized protein gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0619 Arch_0620 Arch_0620 Arch_0620 704976 705941 + hypothetical protein KEGG: jde:Jden_0372 hypothetical protein~SPTR: C7QZN5 Putative uncharacterized protein gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0620 Arch_0621 Arch_0621 Arch_0621 706062 706484 + conserved hypothetical protein KEGG: xce:Xcel_0812 hypothetical protein~SPTR: C2KQ49 Putative uncharacterized protein gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0621 Arch_0622 Arch_0622 Arch_0622 706515 707462 + hypothetical protein KEGG: jde:Jden_0372 hypothetical protein~SPTR: D0YSN0 Putative lipoprotein gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0622 Arch_0623 Arch_0623 Arch_0623 707510 708706 + Peptidoglycan-binding domain 1 protein InterPro IPR002477~KEGG: jde:Jden_0373 hypothetical protein~PFAM: Peptidoglycan-binding domain 1 protein~SPTR: C7QZN6 Putative uncharacterized protein~PFAM: Putative peptidoglycan binding domain gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0623 Arch_0624 Arch_0624 Arch_0624 708703 709368 + ABC transporter related protein COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR017871:IPR003439:IPR003593~KEGG: jde:Jden_0374 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C2KQ56 ABC superfamily ATP binding cassette transporter%2C ABC protein~PFAM: ABC transporter gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0624 Arch_0625 Arch_0625 Arch_0625 709361 710608 + protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: jde:Jden_0375 protein of unknown function DUF214~PFAM: protein of unknown function DUF214~SPTR: D0YSN3 Putative macrolide export ATP-binding/permease protein MacB~PFAM: Predicted permease gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0625 Arch_0626 Arch_0626 Arch_0626 710976 711971 + riboflavin biosynthesis protein RibF COGs: COG0196 FAD synthase~InterPro IPR014729:IPR015865:IPR015864:IPR002606~KEGG: bcv:Bcav_2486 riboflavin biosynthesis protein RibF~PFAM: FAD synthetase%3B Riboflavin kinase~SPTR: D0WR17 Riboflavin biosynthesis protein RibF~TIGRFAM: riboflavin biosynthesis protein RibF~PFAM: Riboflavin kinase%3B FAD synthetase~TIGRFAM: riboflavin kinase/FMN adenylyltransferase gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0626 Arch_0627 Arch_0627 Arch_0627 711996 712160 + ABC transporter family protein KEGG: ABC transporter family protein~SPTR: Q9F6C3 Putative ABC transporter gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0627 Arch_0628 Arch_0628 Arch_0628 712950 716084 + LPXTG-motif cell wall anchor domain protein COGs: COG4886 Leucine-rich repeat (LRR) protein~InterPro IPR007331:IPR019931~KEGG: pac:PPA0779 putative for Fe-transport~PFAM: Htaa domain protein~SPTR: C0W1M4 Putative uncharacterized protein~TIGRFAM: LPXTG-motif cell wall anchor domain protein~PFAM: Htaa gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0628 Arch_0629 Arch_0629 Arch_0629 716178 717254 + periplasmic binding protein COGs: COG4558 ABC-type hemin transport system periplasmic component~InterPro IPR002491~KEGG: pac:PPA0780 hemin receptor precursor~PFAM: periplasmic binding protein~SPTR: C0W1M5 HmuT family heme-binding lipoprotein~PFAM: Periplasmic binding protein gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0629 Arch_0630 Arch_0630 Arch_0630 717258 718322 + transport system permease protein COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component~InterPro IPR000522~KEGG: pac:PPA0781 ABC-type transporter%2C permease component~PFAM: transport system permease protein~SPTR: C0W1M6 Hemin ABC superfamily ATP binding cassette transporter%2C membrane protein~PFAM: FecCD transport family gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0630 Arch_0631 Arch_0631 Arch_0631 718319 719098 + ABC transporter related protein COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components~InterPro IPR017871:IPR003439:IPR003593~KEGG: pac:PPA0782 ABC-type transporter%2C ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C0W1M7 ABC superfamily ATP binding cassette transporter%2C ABC protein~PFAM: ABC transporter gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0631 Arch_0632 Arch_0632 Arch_0632 719265 719534 + ribosomal protein S15 COGs: COG0184 Ribosomal protein S15P/S13E~InterPro IPR009068:IPR000589:IPR005290~KEGG: bde:BDP_0366 RpsO SSU ribosomal protein S15P~PFAM: ribosomal protein S15~SPTR: D0WR16 Ribosomal protein S15~TIGRFAM: ribosomal protein S15~PFAM: Ribosomal protein S15~TIGRFAM: ribosomal protein S15%2C bacterial/organelle gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0632 Arch_0633 Arch_0633 Arch_0633 719797 722226 + guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)~InterProIPR015848:IPR012340:IPR004088:IPR003029:IPR 001247:IPR015847:IPR018111:IPR014069:IPR012162:IPR004087:I PR020568:IPR016027~KEGG: xce:Xcel_1217 guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase~PFAM: 3' exoribonuclease%3B Polynucleotide phosphorylase%2C phosphorolytic RNA-binding%3B Exoribonuclease%2C phosphorolytic domain 2%3B K Homology%2C type 1%2C subgroup%3B RNA binding S1 domain protein~PRIAM: Polyribonucleotide nucleotidyltransferase~SMART: KH domain protein~SPTR: D0WR15 Polyribonucleotide nucleotidyltransferase~TIGRFAM: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase%3B polyribonucleotide nucleotidyltransferase~PFAM: KH domain%3B S1 RNA binding domain%3B 3' exoribonuclease family%2C domain 1%3B Polyribonucleotide nucleotidyltransferase%2C RNA binding domain%3B 3' exoribonuclease family%2C domain 2~TIGRFAM: polyribonucleotide nucleotidyltransferase%3B guanosine pentaphosphate synthetase I/polynucleotide phosphorylase gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0633 Arch_0634 Arch_0634 Arch_0634 722349 723554 + major facilitator superfamily MFS_1 InterPro IPR016196:IPR011701~KEGG: str:Sterm_2283 major facilitator superfamily MFS_1~PFAM: major facilitator superfamily MFS_1~SPTR: C2EDD4 Putative uncharacterized protein~PFAM: Major Facilitator Superfamily gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0634 Arch_0635 Arch_0635 Arch_0635 723590 724911 + pseudogene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0635 Arch_0636 Arch_0636 Arch_0636 725080 725661 - GCN5-related protein N-acetyltransferase InterPro IPR016181~KEGG: bcv:Bcav_2469 GCN5-related protein N-acetyltransferase~SPTR: C0W7E2 Putative uncharacterized protein gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0636 Arch_0637 Arch_0637 Arch_0637 725750 727423 + RNA-metabolising metallo-beta-lactamase COGs: COG0595 hydrolase of the metallo-beta-lactamase superfamily~InterPro IPR011108~KEGG: xce:Xcel_1230 beta-lactamase domain protein~PFAM: RNA-metabolising metallo-beta-lactamase~SPTR: C1RG99 Predicted hydrolase of the metallo-beta-lactamase superfamily~PFAM: Metallo-beta-lactamase superfamily%3B RNA-metabolising metallo-beta-lactamase~TIGRFAM: conserved hypothetical protein gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0637 Arch_0638 Arch_0638 Arch_0638 727578 728702 - ABC transporter related protein COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components~InterProIPR008995:IPR017871:IPR003593:IPR003439:IPR 013611~KEGG: xce:Xcel_2995 ABC transporter related protein~PFAM: ABC transporter related%3B Transport-associated OB domain protein~SMART: AAA ATPase~SPTR: D1BZA4 ABC transporter related protein~PFAM: ABC transporter%3B TOBE domain~TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0638 Arch_0639 Arch_0639 Arch_0639 728794 730584 - binding-protein-dependent transport systems inner membrane component COGs: COG1178 ABC-type Fe3+ transport system permease component~InterPro IPR000515~KEGG: xce:Xcel_2994 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: A3TLH6 Iron(III)-transport system permease protein sfuB~PFAM: Binding-protein-dependent transport system inner membrane component gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0639 Arch_0640 Arch_0640 Arch_0640 730618 731670 - extracellular solute-binding protein family 1 COGs: COG1840 ABC-type Fe3+ transport system periplasmic component~InterPro IPR006059~KEGG: xce:Xcel_2993 extracellular solute-binding protein family 1~PFAM: extracellular solute-binding protein family 1~SPTR: D1BZA2 Extracellular solute-binding protein family 1~PFAM: Bacterial extracellular solute-binding protein gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0640 Arch_0641 Arch_0641 Arch_0641 732138 732824 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR011006:IPR001789:IPR011991:IPR001867~KEGG: xce:Xcel_2992 two component transcriptional regulator%2C winged helix family~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver~SPTR: D1BZA1 Two component transcriptional regulator%2C winged helix family~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0641 Arch_0642 Arch_0642 Arch_0642 732843 733616 - histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterProIPR004358:IPR003594:IPR009082:IPR003661:IPR 005467~KEGG: xce:Xcel_2991 histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SPTR: C2KNB8 Sensor protein~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0642 Arch_0643 Arch_0643 Arch_0643 733715 734623 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase~InterPro IPR016040:IPR006140~KEGG: art:Arth_3671 D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding~SPTR: C1RHG2 Phosphoglycerate dehydrogenase-like oxidoreductase~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0643 Arch_0644 Arch_0644 Arch_0644 734758 737289 + cell division protein FtsK/SpoIIIE COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein~InterPro IPR003593:IPR002543:IPR018541~KEGG: kra:Krad_1482 cell divisionFtsK/SpoIIIE~PFAM: cell divisionFtsK/SpoIIIE%3B DNA translocase ftsK gamma~SMART: AAA ATPase~SPTR: D0WR03 FtsK/SpoIIIE family protein~PFAM: Ftsk gamma domain%3B FtsK/SpoIIIE family gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0644 Arch_0645 Arch_0645 Arch_0645 737317 737946 + CDP-diacylglycerol/glycerol-3-phosphate3-phosphatidyl transferase COGs: COG0558 Phosphatidylglycerophosphate synthase~InterPro IPR000462:IPR004570~KEGG: rop:ROP_67400 phosphatidylglycerophosphate synthase~PFAM: CDP-alcohol phosphatidyltransferase~SPTR: D0WR00 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase~TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0645 Arch_0646 Arch_0646 Arch_0646 737953 738432 + CinA domain protein COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced)~InterPro IPR008136~KEGG: kse:Ksed_17980 competence/damage-inducible protein CinA~PFAM: CinA domain protein~SPTR: A7BD51 Putative uncharacterized protein~PFAM: Competence-damaged protein~TIGRFAM: competence/damage-inducible protein CinA C-terminal domain gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0646 Arch_0647 Arch_0647 Arch_0647 738577 738981 + transcriptional regulator%2C XRE family InterPro IPR010982:IPR001387~KEGG: aau:AAur_1591 helix-turn-helix domain-containing protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein~SPTR: D0WQZ8 Putative Helix-turn-helix domain protein~PFAM: Helix-turn-helix gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0647 Arch_0648 Arch_0648 Arch_0648 738984 739211 + hypothetical protein KEGG: tcu:Tcur_3297 hypothetical protein~SPTR: D0WQZ7 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3046) gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0648 Arch_0649 Arch_0649 Arch_0649 739513 740559 + recA protein COGs: COG0468 RecA/RadA recombinase~InterProIPR001553:IPR020584:IPR003593:IPR020588:IPR 020587:IPR013765~KEGG: jde:Jden_1041 RecA protein~PFAM: RecA domain protein~SMART: AAA ATPase~SPTR: D0WQZ6 Protein RecA~TIGRFAM: recA protein~PFAM: recA bacterial DNA recombination protein~TIGRFAM: protein RecA gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0649 Arch_0650 Arch_0650 Arch_0650 740648 741235 + regulatory protein RecX COGs: COG2137 conserved hypothetical protein~InterPro IPR003783~KEGG: sgr:SGR_1744 recombination regulator RecX~PFAM: regulatory protein RecX~SPTR: B4VD63 Regulatory protein recX~PFAM: RecX family gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0650 Arch_0651 Arch_0651 Arch_0651 741332 742876 + RNA modification enzyme%2C MiaB family COGs: COG0621 2-methylthioadenine synthetase~InterProIPR006638:IPR002792:IPR013848:IPR013785:IPR 005839:IPR006463:IPR007197~KEGG: bcv:Bcav_2442 RNA modification enzyme%2C MiaB family~PFAM: Protein of unknown function UPF0004 %3B Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: D0WQZ4 tRNA-I(6)A37 thiotransferase enzyme MiaB~TIGRFAM: RNA modification enzyme%2C MiaB family%3B tRNA-i(6)A37 thiotransferase enzyme MiaB~PFAM: Radical SAM superfamily%3B Uncharacterized protein family UPF0004~TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB%3B RNA modification enzyme%2C MiaB family gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0651 Arch_0652 Arch_0652 Arch_0652 742877 743824 + tRNA delta(2)-isopentenylpyrophosphate transferase COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase~InterPro IPR018022:IPR002627~KEGG: bcv:Bcav_2439 tRNA delta(2)-isopentenylpyrophosphate transferase~PFAM: tRNA isopentenyltransferase~PRIAM: tRNA isopentenyltransferase~SPTR: D0WQZ3 tRNA delta(2)-isopentenylpyrophosphate transferase~TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase~PFAM: IPP transferase~TIGRFAM: tRNA isopentenyltransferase (miaA) gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0652 Arch_0653 Arch_0653 Arch_0653 743796 744428 - methyltransferase small COGs: COG2813 16S RNA G1207 methylase RsmC~InterPro IPR007848~KEGG: rmu:RMDY18_14450 16S RNA G1207 methylase RsmC~PFAM: methyltransferase small~SPTR: C6R2F9 Methyltransferase small~PFAM: Methyltransferase small domain gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0653 Arch_0654 Arch_0654 Arch_0654 744458 746038 + GTP-binding proten HflX COGs: COG2262 GTPase~InterPro IPR006073:IPR016496:IPR002917~KEGG: bcv:Bcav_2436 GTP-binding protein HflX~PFAM: GTP-binding protein HSR1-related~SPTR: D0WQY6 GTP-binding protein HflX~TIGRFAM: GTP-binding proten HflX~PFAM: GTPase of unknown function~TIGRFAM: GTP-binding protein HflX gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0654 Arch_0655 Arch_0655 Arch_0655 746031 747974 + helicase c2 COGs: COG1199 Rad3-related DNA helicase~InterPro IPR014001:IPR006555:IPR014013~KEGG: xce:Xcel_1256 helicase C2~SMART: helicase c2%3B DEAD-like helicase~SPTR: D0WQY5 ATP-dependent helicase DinG gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0655 Arch_0656 Arch_0656 Arch_0656 747984 748772 - transcriptional repressor%2C LexA family COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase)~InterProIPR006197:IPR015927:IPR011991:IPR011056:IPR 006200:IPR006199:IPR019759~KEGG: xce:Xcel_1258 SOS-response transcriptional repressor%2C LexA~PFAM: LexA DNA-binding domain protein%3B Peptidase S24/S26A/S26B%2C conserved region~SPTR: D1C0A0 SOS-response transcriptional repressor%2C LexA~TIGRFAM: LexA repressor~PFAM: LexA DNA binding domain%3B Peptidase S24-like~TIGRFAM: SOS regulatory protein LexA gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0656 Arch_0657 Arch_0657 Arch_0657 748917 749519 + Peptidoglycan-binding lysin domain protein InterPro IPR002482:IPR018392~KEGG: art:Arth_1469 peptidoglycan-binding LysM~PFAM: Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding LysM~SPTR: D0WQY1 Putative LysM domain protein gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0657 Arch_0658 Arch_0658 Arch_0658 749545 750048 + ATP-cone domain protein COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains~InterPro IPR005144:IPR003796~KEGG: bfa:Bfae_10640 transcriptional regulator NrdR~PFAM: ATP-cone domain protein~SPTR: D1BJ23 Transcriptional regulator NrdR~PFAM: ATP cone domain~TIGRFAM: transcriptional regulator NrdR gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0658 Arch_0659 Arch_0659 Arch_0659 750142 752181 - AMP-dependent synthetase and ligase COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II~InterPro IPR018062:IPR020845:IPR000873~KEGG: saq:Sare_2221 acyl-CoA synthetase~PFAM: AMP-dependent synthetase and ligase~SPTR: D0WQX6 CoA ligase~PFAM: AMP-binding enzyme gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0659 Arch_0660 Arch_0660 Arch_0660 752279 754534 - UvrD/REP helicase COGs: COG3973 Superfamily I DNA and RNA helicase~InterPro IPR014016:IPR000212~KEGG: bcv:Bcav_2428 ATP-dependent DNA helicase~PFAM: UvrD/REP helicase~SPTR: D0WQX3 Putative DNA or RNA helicase%2C Superfamily I~PFAM: UvrD/REP helicase gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0660 Arch_0661 Arch_0661 Arch_0661 754692 755714 + protein of unknown function DUF75 InterPro IPR002766~KEGG: tfu:Tfu_0926 hypothetical protein~PFAM: protein of unknown function DUF75~SPTR: D0WQX2 Putative uncharacterized protein~PFAM: PAC2 family gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0661 Arch_0662 Arch_0662 Arch_0662 755711 756532 - conserved hypothetical protein COGs: COG0421 Spermidine synthase~KEGG: bcv:Bcav_2425 hypothetical protein~SPTR: D0WQX1 Putative spermidine synthase gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0662 Arch_0663 Arch_0663 Arch_0663 756593 757819 + DNA-directed DNA polymerase COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair~InterPro IPR017961:IPR017963:IPR017962:IPR001126~KEGG: bcv:Bcav_2424 DNA-directed DNA polymerase~PFAM: UMUC domain protein DNA-repair protein~PRIAM: DNA-directed DNA polymerase~SPTR: D0WQX0 DNA polymerase IV~PFAM: impB/mucB/samB family C-terminal%3B impB/mucB/samB family%3B IMS family HHH motif gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0663 Arch_0664 Arch_0664 Arch_0664 757882 758277 + conserved hypothetical protein KEGG: krh:KRH_14920 hypothetical protein~SPTR: D0WQW9 Membrane protein~PFAM: Protein of unknown function (DUF3040) gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0664 Arch_0665 Arch_0665 Arch_0665 758753 759184 + MraZ protein COGs: COG2001 conserved hypothetical protein~InterPro IPR003444:IPR020603~KEGG: krh:KRH_14910 cell division protein MraZ~PFAM: MraZ domain~SPTR: D0WQW6 MraZ protein~TIGRFAM: MraZ protein~PFAM: MraZ protein~TIGRFAM: mraZ protein gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0665 Arch_0666 Arch_0666 Arch_0666 759299 760309 + S-adenosyl-methyltransferase MraW COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis~InterPro IPR002903~KEGG: xce:Xcel_1276 S-adenosyl-methyltransferase MraW~PFAM: methyltransferase~SPTR: D0WQW5 S-adenosyl-methyltransferase MraW~TIGRFAM: S-adenosyl-methyltransferase MraW~PFAM: MraW methylase family~TIGRFAM: S-adenosyl-methyltransferase MraW gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0666 Arch_0667 Arch_0667 Arch_0667 760306 760704 + conserved hypothetical protein KEGG: krh:KRH_14890 hypothetical protein~SPTR: D0WQW4 Putative membrane protein gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0667 Arch_0668 Arch_0668 Arch_0668 760724 762610 + Peptidoglycan glycosyltransferase COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2~InterPro IPR012338:IPR005311:IPR001460~KEGG: bcv:Bcav_2416 peptidoglycan glycosyltransferase~PFAM: penicillin-binding protein transpeptidase%3B Penicillin-binding protein dimerisation domain~PRIAM: Peptidoglycan glycosyltransferase~SPTR: D0WQW3 Penicillin binding protein transpeptidase domain protein~PFAM: Penicillin binding protein transpeptidase domain%3B Penicillin-binding Protein dimerisation domain gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0668 Arch_0669 Arch_0669 Arch_0669 762607 764085 + UDP-N-acetylmuramyl-tripeptide synthetase COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase~InterProIPR013221:IPR004101:IPR018109:IPR005761:IPR 000713~KEGG: xce:Xcel_1279 UDP-N-acetylmuramyl-tripeptide synthetase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein~SPTR: D0WQW2 UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C 6-diaminopimelate ligase~TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase~PFAM: Mur ligase family%2C catalytic domain%3B Mur ligase family%2C glutamate ligase domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0669 Arch_0670 Arch_0670 Arch_0670 764089 765501 + UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate/D-alanyl-D-alanyl ligase COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase~InterPro IPR013221:IPR004101:IPR005863:IPR000713~KEGG: bcv:Bcav_2414 UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diamin opimelate/D-alanyl-D-alanylligase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein~SPTR: D0WQW1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase~TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-d iaminopimelate/D-alanyl-D-alanylligase~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase family%2C catalytic domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0670 Arch_0671 Arch_0671 Arch_0671 765502 766587 + phospho-N-acetylmuramoyl-pentapeptide-transferase COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase~InterPro IPR018480:IPR003524:IPR018481~KEGG: bcv:Bcav_2413 phospho-N-acetylmuramoyl-pentapeptide-transferas E~PFAM: Glycosyl transferase%2C family 4%2C conserved region%3B Phospho-N-acetylmuramoyl-pentapeptide transferase%2C conserved site~SPTR: D0WQW0 Phospho-N-acetylmuramoyl-pentapeptide-transferase~TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-trans ferase~PFAM: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1%3B Glycosyl transferase family 4~TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0671 Arch_0672 Arch_0672 Arch_0672 766584 768065 + UDP-N-acetylmuramoylalanine/D-glutamate ligase COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase~InterPro IPR013221:IPR004101:IPR018109:IPR005762~KEGG: bcv:Bcav_2412 UDP-N-acetylmuramoylalanine/D-glutamate ligase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein~SPTR: C1RIZ0 UDP-N-acetylmuramoylalanine--D-glutamate ligase~TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase~PFAM: Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0672 Arch_0673 Arch_0673 Arch_0673 768068 769297 + cell cycle protein COGs: COG0772 Bacterial cell division membrane protein~InterPro IPR018488:IPR001182~KEGG: kra:Krad_3200 cell division protein FtsW~PFAM: cell cycle protein~SPTR: D0WQN1 Cell division protein FtsW~PFAM: Cell cycle protein gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0673 Arch_0674 Arch_0674 Arch_0674 769297 770403 + UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase~InterPro IPR006009:IPR004276:IPR007235~KEGG: bcv:Bcav_2410 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase~PFAM: glycosyl transferase family 28%3B Glycosyltransferase 28 domain~SPTR: C5BW59 UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase~TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase~PFAM: Glycosyltransferase family 28 N-terminal domain%3B Glycosyltransferase family 28 C-terminal domain~TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0674 Arch_0675 Arch_0675 Arch_0675 770403 771755 + UDP-N-acetylmuramate/alanine ligase COGs: COG0773 UDP-N-acetylmuramate-alanine ligase~InterProIPR013221:IPR004101:IPR016040:IPR005758:IPR 000713~KEGG: bcv:Bcav_2409 UDP-N-acetylmuramate/alanine ligase~PFAM: cytoplasmic peptidoglycan synthetase domain protein%3B Mur ligase middle domain protein~SPTR: D0WQV8 UDP-N-acetylmuramate--alanine ligase~TIGRFAM: UDP-N-acetylmuramate/alanine ligase~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase family%2C catalytic domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramate--alanine ligase gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0675 Arch_0676 Arch_0676 Arch_0676 771752 772729 + Cell division septal protein COGs: COG1589 Cell division septal protein~KEGG: jde:Jden_1076 polypeptide-transport-associated domain protein FtsQ-type~SPTR: D0WQV7 Cell division protein FtsQ-like protein~PFAM: Cell division protein FtsQ gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0676 Arch_0677 Arch_0677 Arch_0677 772849 774066 + cell division protein FtsZ COGs: COG0206 Cell division GTPase~InterProIPR000158:IPR019746:IPR008280:IPR020805:IPR 003008:IPR018316~KEGG: cai:Caci_6104 cell division protein FtsZ~PFAM: Tubulin/FtsZ GTPase%3B Tubulin/FtsZ%2C 2-layer sandwich domain~SPTR: D0WQV5 Cell division protein FtsZ~TIGRFAM: cell division protein FtsZ~PFAM: Tubulin/FtsZ family%2C GTPase domain%3B FtsZ family%2C C-terminal domain~TIGRFAM: cell division protein FtsZ gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0677 Arch_0678 Arch_0678 Arch_0678 774150 774920 + protein of unknown function DUF152 COGs: COG1496 conserved hypothetical protein~InterPro IPR011324:IPR003730~KEGG: tfu:Tfu_1114 hypothetical protein~PFAM: protein of unknown function DUF152~SPTR: Q47QW5 Putative uncharacterized protein~PFAM: Multi-copper polyphenol oxidoreductase laccase~TIGRFAM: conserved hypothetical protein TIGR00726 gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0678 Arch_0679 Arch_0679 Arch_0679 774978 775388 + protein of unknown function DUF552 COGs: COG1799 conserved hypothetical protein~InterPro IPR007561~KEGG: bcv:Bcav_2405 protein of unknown function DUF552~PFAM: protein of unknown function DUF552~SPTR: D0WQV3 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF552) gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0679 Arch_0680 Arch_0680 Arch_0680 775391 775684 + protein of unknown function YGGT InterPro IPR003425~KEGG: fra:Francci3_1422 hypothetical protein~PFAM: protein of unknown function YGGT~SPTR: C2BWZ3 Transmembrane protein~PFAM: YGGT family gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0680 Arch_0681 Arch_0681 Arch_0681 775856 776434 + DivIVA domain protein InterPro IPR019933:IPR007793~KEGG: xce:Xcel_1291 DivIVA family protein~PFAM: DivIVA family protein~SPTR: D0WQV0 Cell division protein%2C DivIVA family~TIGRFAM: DivIVA domain~PFAM: DivIVA protein~TIGRFAM: DivIVA domain gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0681 Arch_0682 Arch_0682 Arch_0682 776537 777007 + lipoprotein signal peptidase COGs: COG0597 Lipoprotein signal peptidase~InterPro IPR001872~KEGG: xce:Xcel_1293 lipoprotein signal peptidase~PFAM: peptidase A8 signal peptidase II~SPTR: D0WQU9 Lipoprotein signal peptidase~TIGRFAM: lipoprotein signal peptidase~PFAM: Signal peptidase (SPase) II~TIGRFAM: lipoprotein signal peptidase gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0682 Arch_0683 Arch_0683 Arch_0683 777007 777927 + pseudouridine synthase%2C RluA family COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterProIPR020103:IPR006224:IPR002942:IPR006225:IPR 006145~KEGG: bcv:Bcav_2401 pseudouridine synthase%2C RluA family~PFAM: pseudouridine synthase%3B RNA-binding S4 domain protein~SPTR: D0WQU8 Ribosomal large subunit pseudouridine synthase D~TIGRFAM: pseudouridine synthase%2C RluA family~PFAM: RNA pseudouridylate synthase~TIGRFAM: pseudouridine synthase%2C RluA family gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0683 Arch_0684 Arch_0684 Arch_0684 777973 778167 + pseudogene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0684 Arch_0685 Arch_0685 Arch_0685 778223 781771 + DNA polymerase III%2C alpha subunit COGs: COG0587 DNA polymerase III alpha subunit~InterProIPR016195:IPR016027:IPR003141:IPR004805:IPR 004013:IPR011708:IPR004365~KEGG: jde:Jden_1086 DNA polymerase III%2C alpha subunit~PFAM: DNA polymerase III alpha subunit%3B PHP domain protein%3B nucleic acid binding OB-fold tRNA/helicase-type~PRIAM: DNA-directed DNA polymerase~SMART: phosphoesterase PHP domain protein~SPTR: D0WQU6 DNA polymerase III%2C alpha subunit~TIGRFAM: DNA polymerase III%2C alpha subunit~PFAM: Bacterial DNA polymerase III alpha subunit%3B PHP domain%3B OB-fold nucleic acid binding domain~TIGRFAM: DNA-directed DNA polymerase III (polc) gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0685 Arch_0686 Arch_0686 Arch_0686 781837 782064 - RNA-binding S4 domain protein COGs: COG2501 conserved hypothetical protein~InterPro IPR002942~KEGG: xce:Xcel_1301 RNA-binding S4 domain protein~PFAM: RNA-binding S4 domain protein~SPTR: D0WQU2 RNA-binding S4~PFAM: S4 domain gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0686 Arch_0687 Arch_0687 Arch_0687 782061 782687 - membrane-associated protein COGs: COG0586 membrane-associated protein~KEGG: nml:Namu_0645 SNARE associated Golgi protein~SPTR: C0W0A7 Putative uncharacterized protein~PFAM: SNARE associated Golgi protein gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0687 Arch_0688 Arch_0688 Arch_0688 782688 783086 - ferric uptake regulator%2C Fur family COGs: COG0735 Fe2+/Zn2+ uptake regulation protein~InterPro IPR002481~KEGG: bcv:Bcav_1772 ferric uptake regulator%2C Fur family~PFAM: ferric-uptake regulator~SPTR: C5C4Q0 Ferric uptake regulator%2C Fur family~PFAM: Ferric uptake regulator family gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0688 Arch_0689 Arch_0689 Arch_0689 783127 783993 - ABC-3 protein COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components~InterPro IPR001626~KEGG: bcv:Bcav_1773 ABC-3 protein~PFAM: ABC-3 protein~SPTR: C0W322 Metal cation ABC superfamily ATP binding cassette transporter%2C membrane protein~PFAM: ABC 3 transport family gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0689 Arch_0690 Arch_0690 Arch_0690 783986 784705 - ABC transporter related protein COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component~InterPro IPR017871:IPR003593:IPR003439~KEGG: jde:Jden_1534 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D1BF11 ATPase component of Mn/Zn ABC-type transporter~PFAM: ABC transporter gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0690 Arch_0691 Arch_0691 Arch_0691 784710 785927 - periplasmic solute binding protein COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin~InterPro IPR006127~KEGG: gym:GYMC10_3445 periplasmic solute binding protein~PFAM: periplasmic solute binding protein~SPTR: C0W0B1 Metal ABC superfamily ATP binding cassette transporter%2C binding protein~PFAM: Periplasmic solute binding protein family gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0691 Arch_0692 Arch_0692 Arch_0692 786088 787482 + glycyl-tRNA synthetase COGs: COG0423 Glycyl-tRNA synthetase (class II)~InterProIPR002315:IPR004154:IPR019825:IPR006195:IPR 002314~KEGG: pac:PPA0949 glycyl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Anticodon-binding domain protein~SPTR: D0WQT5 Glycine--tRNA ligase~TIGRFAM: glycyl-tRNA synthetase~PFAM: Anticodon binding domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: glycyl-tRNA synthetase%2C dimeric type gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0692 Arch_0693 Arch_0693 Arch_0693 787472 788680 + YibE/F family protein COGs: COG5438 multitransmembrane protein~InterPro IPR012507~KEGG: bcv:Bcav_1777 YibE/F family protein~PFAM: YibE/F family protein~SPTR: D0WQT4 Putative membrane protein~PFAM: YibE/F-like protein gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0693 Arch_0694 Arch_0694 Arch_0694 788681 789904 + TIM-barrel protein%2C nifR3 family COGs: COG0042 tRNA-dihydrouridine synthase~InterPro IPR018517:IPR013785:IPR004652:IPR001269~KEGG: xce:Xcel_2165 TIM-barrel protein%2C nifR3 family~PFAM: dihydrouridine synthase DuS~SPTR: D0WQT3 Putative tRNA-dihydrouridine synthase~TIGRFAM: TIM-barrel protein%2C nifR3 family~PFAM: Dihydrouridine synthase (Dus)~TIGRFAM: putative TIM-barrel protein%2C nifR3 family gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0694 Arch_0695 Arch_0695 Arch_0695 789946 790956 - hypothetical protein KEGG: rak:A1C_03465 thioredoxin reductase~SPTR: A8GNK2 Ferredoxin--NADP reductase gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0695 Arch_0696 Arch_0696 Arch_0696 790993 792243 + deoxyguanosinetriphosphate triphosphohydrolase COGs: COG0232 dGTP triphosphohydrolase~InterPro IPR003607:IPR006261:IPR006674~KEGG: bcv:Bcav_1786 deoxyguanosinetriphosphate triphosphohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain~SMART: metal-dependent phosphohydrolase HD region~SPTR: D0WQT2 Putative deoxyguanosinetriphosphate triphosphohydrolase~TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase~PFAM: HD domain~TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase%2C putative%3B uncharacterized domain HDIG gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0696 Arch_0697 Arch_0697 Arch_0697 792370 793602 + galactose/glucose-binding lipoprotein KEGG: ere:EUBREC_0477 galactose/glucose-binding lipoprotein~SPTR: C9L3Z0 Galactose/glucose-binding lipoprotein gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0697 Arch_0698 Arch_0698 Arch_0698 793693 795201 + ABC transporter related protein COGs: COG1129 ABC-type sugar transport system ATPase component~InterPro IPR017871:IPR003593:IPR003439~KEGG: ere:EUBREC_0478 galactoside ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C0FJE8 Putative uncharacterized protein~PFAM: ABC transporter gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0698 Arch_0699 Arch_0699 Arch_0699 795212 796870 + inner-membrane translocator COGs: COG4211 ABC-type glucose/galactose transport system permease component~InterPro IPR001851~KEGG: ere:EUBREC_0479 galactoside ABC transporter%2C permease protein%2C putative~PFAM: inner-membrane translocator~SPTR: A8RKC0 Putative uncharacterized protein~PFAM: Branched-chain amino acid transport system / permease component gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0699 Arch_0700 Arch_0700 Arch_0700 796950 797297 - Rhodanese domain protein InterPro IPR001763~KEGG: bfa:Bfae_25560 rhodanese-related sulfurtransferase~SMART: Rhodanese domain protein~SPTR: C1XP10 Rhodanese-related sulfurtransferase~PFAM: Rhodanese-like domain gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0700 Arch_0701 Arch_0701 Arch_0701 797393 799345 + DNA primase COGs: COG0358 DNA primase~InterProIPR002694:IPR006154:IPR013264:IPR006295:IPR 006171:IPR019475~KEGG: bcv:Bcav_1788 DNA primase~PFAM: DNA primase catalytic core domain%3B zinc finger CHC2-family protein%3B TOPRIM domain protein%3B DNA primase%2C DnaB-helicase binding domain~SMART: zinc finger CHC2-family protein%3B Toprim sub domain protein~SPTR: D0WQS5 DNA primase~TIGRFAM: DNA primase~PFAM: Toprim domain%3B DNA primase catalytic core%2C N-terminal domain%3B CHC2 zinc finger%3B DnaB-helicase binding domain of primase~TIGRFAM: DNA primase%2C catalytic core gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0701 Arch_0702 Arch_0702 Arch_0702 799832 800407 + hypothetical protein KEGG: bfa:Bfae_27220 hypothetical protein~SPTR: C7MH45 Putative uncharacterized protein gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0702 Arch_0703 Arch_0703 Arch_0703 800410 801183 + hypothetical protein InterPro IPR000601~KEGG: xce:Xcel_1537 hypothetical protein~SPTR: D1BS75 Putative uncharacterized protein gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0703 Arch_0704 Arch_0704 Arch_0704 801193 801447 + hypothetical protein KEGG: hypothetical protein~SPTR: D0WQR6 Putative membrane protein gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0704 Arch_0705 Arch_0705 Arch_0705 801428 801946 + hypothetical protein KEGG: xce:Xcel_2146 hypothetical protein~SPTR: D0WQR5 Putative uncharacterized protein gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0705 Arch_0706 Arch_0706 Arch_0706 802220 802663 + hypothetical protein KEGG: dda:Dd703_1042 Hpt sensor signal transduction histidine kinase~SPTR: C6CBR2 Sensor protein gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0706 Arch_0707 Arch_0707 Arch_0707 802771 804387 + PKD domain containing protein InterPro IPR000601:IPR000675~KEGG: hmu:Hmuk_0622 PKD domain containing protein~PFAM: PKD domain containing protein%3B cutinase~SMART: PKD domain containing protein~SPTR: C5VAN7 Cutinase family protein~PFAM: Cutinase%3B PKD domain gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0707 Arch_0708 Arch_0708 Arch_0708 804529 804636 + hypothetical protein gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0708 Arch_0709 Arch_0709 Arch_0709 804836 805576 - phosphatidylcholine synthase COGs: COG1183 Phosphatidylserine synthase~KEGG: pla:Plav_1484 phosphatidylcholine synthase~SPTR: C0VXW7 Phosphatidylcholine synthase gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0709 Arch_0710 Arch_0710 Arch_0710 805784 806725 + NAD-dependent epimerase/dehydratase COGs: COG1090 nucleoside-diphosphate sugar epimerase~InterPro IPR016040:IPR010099:IPR001509:IPR013549~KEGG: sma:SAV_6013 NAD-dependent epimerase/dehydratase family protein~PFAM: NAD-dependent epimerase/dehydratase%3B domain of unknown function DUF1731~SPTR: Q82AP3 Putative NAD dependent epimerase/dehydratase family~PFAM: NAD dependent epimerase/dehydratase family%3B Domain of unknown function (DUF1731)~TIGRFAM: conserved hypothetical protein TIGR01777 gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0710 Arch_0711 Arch_0711 Arch_0711 806844 807350 + conserved hypothetical protein KEGG: bcv:Bcav_1800 hypothetical protein~SPTR: C0W3X4 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3145) gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0711 Arch_0712 Arch_0712 Arch_0712 807355 807681 - hypothetical protein KEGG: asa:ASA_0911 acyl carrier protein~SPTR: A4SJH3 Acyl carrier protein gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0712 Arch_0713 Arch_0713 Arch_0713 807736 808338 + hypothetical protein KEGG: bcv:Bcav_1809 hypothetical protein~SPTR: C5C4T7 Putative uncharacterized protein gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0713 Arch_0714 Arch_0714 Arch_0714 808372 808998 + Sua5/YciO/YrdC/YwlC family protein COGs: COG0009 Putative translation factor (SUA5)~InterPro IPR017945:IPR006070:IPR004388~KEGG: bfa:Bfae_12460 translation factor SUA5~PFAM: SUA5/yciO/yrdC domain~SPTR: D0WQR0 Sua5/YciO/YrdC/YwlC family protein~TIGRFAM: Sua5/YciO/YrdC/YwlC family protein~PFAM: yrdC domain~TIGRFAM: Sua5/YciO/YrdC/YwlC family protein gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0714 Arch_0715 Arch_0715 Arch_0715 809013 809726 + Haloacid dehalogenase domain protein hydrolase COGs: COG0546 phosphatase~InterPro IPR005834~KEGG: rer:RER_36620 hydrolase~PFAM: Haloacid dehalogenase domain protein hydrolase~SPTR: D0WQQ9 Phosphatase%2C HAD family~PFAM: haloacid dehalogenase-like hydrolase gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0715 Arch_0716 Arch_0716 Arch_0716 809704 811503 - ABC transporter related protein COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterProIPR011527:IPR003593:IPR003439:IPR017940:IPR 001140~KEGG: ami:Amir_3754 ABC transporter transmembrane region~PFAM: ABC transporter related%3B ABC transporter transmembrane region~SMART: AAA ATPase~SPTR: C1RL82 ABC-type multidrug transport system%2C ATPase and permease component~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0716 Arch_0717 Arch_0717 Arch_0717 811503 813272 - ABC transporter transmembrane region COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterProIPR011527:IPR017871:IPR016160:IPR003593:IPR 003439:IPR017940:IPR001140~KEGG: bcv:Bcav_2312 ABC transporter transmembrane region~PFAM: ABC transporter transmembrane region%3B ABC transporter related~SMART: AAA ATPase~SPTR: C5BVW2 ABC transporter transmembrane region~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0717 Arch_0718 Arch_0718 Arch_0718 813389 816142 - 2-oxo-acid dehydrogenase E1 subunit%2C homodimeric type COGs: COG2609 Pyruvate dehydrogenase complex dehydrogenase (E1) component~InterPro IPR009014:IPR004660:IPR015941~KEGG: jde:Jden_1512 2-oxo-acid dehydrogenase E1 subunit%2C homodimeric type~SPTR: D0WQQ7 Pyruvate dehydrogenase (Acetyl-transferring)%2C homodimeric type~TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit%2C homodimeric type~PFAM: Transketolase%2C thiamine diphosphate binding domain~TIGRFAM: pyruvate dehydrogenase E1 component%2C homodimeric type gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0718 Arch_0719 Arch_0719 Arch_0719 816433 816846 + conserved hypothetical protein KEGG: bcv:Bcav_1811 hypothetical protein~SPTR: C0W3W7 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3052) gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0719 Arch_0720 Arch_0720 Arch_0720 817003 817152 - hypothetical protein gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0720 Arch_0721 Arch_0721 Arch_0721 817152 817373 - pseudogene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0721 Arch_0722 Arch_0722 Arch_0722 817938 820685 + Glycoside hydrolase%2C family 20%2C catalytic core COGs: COG3525 N-acetyl-beta-hexosaminidase~InterProIPR001540:IPR017853:IPR008979:IPR000421:IPR 013781:IPR015883~KEGG: sgr:SGR_2685 putative beta-N-acetylglucosaminidase~PFAM: Glycoside hydrolase%2C family 20%2C catalytic core%3B coagulation factor 5/8 type domain protein~SPTR: A8REL0 Putative uncharacterized protein~PFAM: F5/8 type C domain%3B Glycosyl hydrolase family 20%2C catalytic domain~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0722 Arch_0723 Arch_0723 Arch_0723 820790 821587 + protein of unknown function DUF34 COGs: COG0327 conserved hypothetical protein~InterPro IPR002678~KEGG: svi:Svir_06980 conserved hypothetical protein TIGR00486~PFAM: protein of unknown function DUF34~SPTR: C7MVQ0 Putative uncharacterized protein~PFAM: NIF3 (NGG1p interacting factor 3)~TIGRFAM: conserved hypothetical protein TIGR00486 gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0723 Arch_0724 Arch_0724 Arch_0724 821603 822349 + hypothetical protein KEGG: bcv:Bcav_1829 hypothetical protein~SPTR: D0WQQ0 Putative uncharacterized protein gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0724 Arch_0725 Arch_0725 Arch_0725 822321 823094 - protein of unknown function DUF328 COGs: COG3022 conserved hypothetical protein~InterPro IPR005583~KEGG: aau:AAur_2412 hypothetical protein~PFAM: protein of unknown function DUF328~SPTR: D0WQP9 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF328) gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0725 Arch_0726 Arch_0726 Arch_0726 823743 824513 - Polyphosphate--glucose phosphotransferase COGs: COG1940 Transcriptional regulator/sugar kinase~InterPro IPR000600~KEGG: xce:Xcel_2049 ROK family protein~PFAM: ROK family protein~PRIAM: Polyphosphate--glucose phosphotransferase~SPTR: D1BFU6 Polyphosphate glucokinase~PFAM: ROK family gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0726 Arch_0727 Arch_0727 Arch_0727 824550 825431 - methionine aminopeptidase%2C type I COGs: COG0024 Methionine aminopeptidase~InterPro IPR001714:IPR000994:IPR002467~KEGG: krh:KRH_10860 methionine aminopeptidase~PFAM: peptidase M24~PRIAM: Methionyl aminopeptidase~SPTR: C0W3W2 Methionine aminopeptidase~TIGRFAM: methionine aminopeptidase%2C type I~PFAM: Metallopeptidase family M24~TIGRFAM: methionine aminopeptidase%2C type I gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0727 Arch_0728 Arch_0728 Arch_0728 825441 826241 - 3-methyl-2-oxobutanoatehydroxymethyltransferase COGs: COG0413 Ketopantoate hydroxymethyltransferase~InterPro IPR015813:IPR003700~KEGG: jde:Jden_1489 3-methyl-2-oxobutanoate hydroxymethyltransferase~PFAM: Ketopantoate hydroxymethyltransferase~PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase~SPTR: D0WQP6 3-methyl-2-oxobutanoate hydroxymethyltransferase~TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase~PFAM: Ketopantoate hydroxymethyltransferase~TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0728 Arch_0729 Arch_0729 Arch_0729 826359 827687 + glutamine synthetase catalytic region COGs: COG0174 Glutamine synthetase~InterPro IPR008147:IPR008146:IPR014746~KEGG: jde:Jden_1487 glutamine synthetase%2C type I~PFAM: glutamine synthetase catalytic region%3B glutamine synthetase beta-Grasp~SPTR: D0WQP4 Glutamate--ammonia ligase~PFAM: Glutamine synthetase%2C catalytic domain%3B Glutamine synthetase%2C beta-Grasp domain~TIGRFAM: glutamine synthetase%2C type I gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0729 Arch_0730 Arch_0730 Arch_0730 827687 830500 + (Glutamate--ammonia-ligase) adenylyltransferase COGs: COG1391 Glutamine synthetase adenylyltransferase~InterPro IPR005190:IPR013546~KEGG: bcv:Bcav_1850 (glutamate--ammonia-ligase) adenylyltransferase~PFAM: glutamate-ammonia ligase adenylyltransferase%3B GlnD PII-uridylyltransferase~PRIAM: [Glutamate--ammonia-ligase] adenylyltransferase~SPTR: D0WQP3 [glutamate-ammonia-ligase] adenylyltransferase~PFAM: GlnD PII-uridylyltransferase%3B Glutamate-ammonia ligase adenylyltransferase gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0730 Arch_0731 Arch_0731 Arch_0731 830520 831122 + Phosphoglycerate mutase COGs: COG0406 Fructose-2 6-bisphosphatase~InterPro IPR001345:IPR013078~KEGG: aau:AAur_3898 phosphoglycerate mutase family protein~PFAM: Phosphoglycerate mutase~SPTR: A1RBG3 Phosphoglycerate mutase family protein~PFAM: Phosphoglycerate mutase family gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0731 Arch_0732 Arch_0732 Arch_0732 831184 832611 - glutamine synthetase%2C type I COGs: COG0174 Glutamine synthetase~InterPro IPR008147:IPR008146:IPR014746:IPR004809~KEGG: kra:Krad_3291 glutamine synthetase%2C type I~PFAM: glutamine synthetase catalytic region%3B glutamine synthetase beta-Grasp~SPTR: D0WQN7 Glutamine synthetase%2C type I~TIGRFAM: glutamine synthetase%2C type I~PFAM: Glutamine synthetase%2C catalytic domain%3B Glutamine synthetase%2C beta-Grasp domain~TIGRFAM: glutamine synthetase%2C type I gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0732 Arch_0733 Arch_0733 Arch_0733 832727 833437 - conserved hypothetical protein KEGG: mlu:Mlut_13380 hypothetical protein~SPTR: D0WQN5 Integral membrane protein gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0733 Arch_0734 Arch_0734 Arch_0734 833510 834775 - major facilitator superfamily MFS_1 InterPro IPR016196:IPR011701~KEGG: bfa:Bfae_28500 major facilitator superfamily transporter~PFAM: major facilitator superfamily MFS_1~SPTR: C0W0I0 Major facilitator transporter~PFAM: Major Facilitator Superfamily gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0734 Arch_0735 Arch_0735 Arch_0735 835021 836715 - 2-oxoglutarate dehydrogenase%2C E2 component%2C dihydrolipoamide succinyltransferase COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein~InterProIPR011053:IPR004167:IPR003016:IPR000089:IPR 014276:IPR001078~KEGG: rmu:RMDY18_07280 pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide acyltransferase (E2) component~PFAM: catalytic domain of components of various dehydrogenase complexes%3B biotin/lipoyl attachment domain-containing protein%3B E3 binding domain protein~SPTR: A7BC68 Putative uncharacterized protein~TIGRFAM: 2-oxoglutarate dehydrogenase%2C E2 component%2C dihydrolipoamide succinyltransferase~PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain)%3B e3 binding domain%3B Biotin-requiring enzyme~TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)%3B 2-oxoglutarate dehydrogenase%2C E2 component%2C dihydrolipoamide succinyltransferase gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0735 Arch_0736 Arch_0736 Arch_0736 836733 838109 - dihydrolipoamide dehydrogenase COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3)~InterProIPR013027:IPR000815:IPR016156:IPR012999:IPR 004099:IPR006258~KEGG: jde:Jden_1475 dihydrolipoamide dehydrogenase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B pyridine nucleotide-disulphide oxidoreductase dimerisation region~SPTR: D0WQM8 Dihydrolipoyl dehydrogenase~TIGRFAM: dihydrolipoamide dehydrogenase~PFAM: Pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation domain~TIGRFAM: dihydrolipoamide dehydrogenase gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0736 Arch_0737 Arch_0737 Arch_0737 838302 838604 + conserved hypothetical protein KEGG: stp:Strop_2530 hypothetical protein~SPTR: D0WQM7 Putative oxidoreductase gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0737 Arch_0738 Arch_0738 Arch_0738 838608 839408 - ABC transporter related protein COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components~InterPro IPR017871:IPR003593:IPR003439~KEGG: cdi:DIP0585 putative iron transport system ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: Q6NJ28 Putative iron transport system ATP-binding protein~PFAM: ABC transporter gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0738 Arch_0739 Arch_0739 Arch_0739 839414 840391 - transport system permease protein COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component~InterPro IPR000522~KEGG: cdi:DIP0584 putative iron transport system membrane protein~PFAM: transport system permease protein~SPTR: Q6NJ29 Putative iron transport system membrane protein~PFAM: FecCD transport family gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0739 Arch_0740 Arch_0740 Arch_0740 840395 841414 - transport system permease protein COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component~InterPro IPR000522~KEGG: cdi:DIP0583 putative iron transport system membrane protein~PFAM: transport system permease protein~SPTR: Q6NJ30 Putative iron transport system membrane protein~PFAM: FecCD transport family gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0740 Arch_0741 Arch_0741 Arch_0741 841427 842368 - periplasmic binding protein COGs: COG4594 ABC-type Fe3+-citrate transport system periplasmic component~InterPro IPR002491~KEGG: cdi:DIP0582 putative iron transport system binding (secreted) protein~PFAM: periplasmic binding protein~SPTR: Q6NJ31 Putative iron transport system binding (Secreted) protein~PFAM: Periplasmic binding protein gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0741 Arch_0742 Arch_0742 Arch_0742 842752 844224 - peptidase M17 leucyl aminopeptidase domain protein COGs: COG0260 Leucyl aminopeptidase~InterPro IPR000819:IPR000923:IPR008283~KEGG: bcv:Bcav_1874 leucyl aminopeptidase~PFAM: peptidase M17 leucyl aminopeptidase domain protein~SPTR: C5C502 Leucyl aminopeptidase~PFAM: Cytosol aminopeptidase family%2C catalytic domain%3B Cytosol aminopeptidase family%2C N-terminal domain gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0742 Arch_0743 Arch_0743 Arch_0743 844248 844916 - putative integral membrane protein KEGG: bcv:Bcav_1880 putative integral membrane protein~SPTR: D0WQM3 Putative membrane protein~PFAM: Protein of unknown function (DUF3043) gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0743 Arch_0744 Arch_0744 Arch_0744 844994 846337 + peptidase M20 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase~InterPro IPR002933:IPR011650~KEGG: aau:AAur_2217 M20/M25/M40 family peptidase~PFAM: peptidase M20%3B peptidase dimerisation domain protein~SPTR: D0WQM1 Peptidase%2C M20 family~PFAM: Peptidase family M20/M25/M40%3B Peptidase dimerisation domain gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0744 Arch_0745 Arch_0745 Arch_0745 846389 847411 + hypothetical protein KEGG: bcv:Bcav_1882 glycerate kinase~SPTR: D0WQM0 Glycerate kinase gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0745 Arch_0746 Arch_0746 Arch_0746 847481 847822 + iron-sulfur cluster assembly accessory protein COGs: COG0316 conserved hypothetical protein~InterPro IPR000361:IPR017870:IPR016092~KEGG: lxx:Lxx15060 hypothetical protein~PFAM: HesB/YadR/YfhF-family protein~SPTR: Q6AE82 Putative uncharacterized protein~TIGRFAM: iron-sulfur cluster assembly accessory protein~PFAM: Iron-sulphur cluster biosynthesis~TIGRFAM: Iron-sulfur cluster assembly accessory protein gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0746 Arch_0747 Arch_0747 Arch_0747 847881 848807 + peptidylprolyl isomerase FKBP-type COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1~InterPro IPR001179~KEGG: bcv:Bcav_1884 peptidylprolyl isomerase FKBP-type~PFAM: peptidylprolyl isomerase FKBP-type~SPTR: D0WQL7 Binding protein~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0747 Arch_0748 Arch_0748 Arch_0748 848870 849487 - Manganese/iron superoxide dismutase COGs: COG0605 Superoxide dismutase~InterPro IPR001189:IPR019832:IPR019831:IPR019833~KEGG: bfa:Bfae_19570 superoxide dismutase~PFAM: Manganese/iron superoxide dismutase-like~SPTR: D0WQL6 Superoxide dismutase~PFAM: Iron/manganese superoxide dismutases%2C alpha-hairpin domain%3B Iron/manganese superoxide dismutases%2C C-terminal domain gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0748 Arch_0749 Arch_0749 Arch_0749 849711 850106 + response regulator receiver protein InterPro IPR011006:IPR001789~KEGG: bcv:Bcav_1893 response regulator receiver protein~SPTR: D0WQL5 Two-component system response regulator gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0749 Arch_0750 Arch_0750 Arch_0750 850107 851900 - DNA polymerase III%2C epsilon subunit COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type)~InterProIPR012337:IPR000305:IPR006055:IPR006054:IPR 013520~KEGG: bcv:Bcav_1900 DNA polymerase III%2C epsilon subunit~PFAM: Exonuclease RNase T and DNA polymerase III%3B Excinuclease ABC C subunit domain protein~PRIAM: DNA-directed DNA polymerase~SMART: Exonuclease%3B Excinuclease ABC C subunit domain protein~SPTR: D0WQL3 Putative DNA polymerase III%2C epsilon subunit~TIGRFAM: DNA polymerase III%2C epsilon subunit~PFAM: Exonuclease%3B GIY-YIG catalytic domain~TIGRFAM: exonuclease%2C DNA polymerase III%2C epsilon subunit family gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0750 Arch_0751 Arch_0751 Arch_0751 851945 852310 - hypothetical protein KEGG: cmi:CMM_0593 hypothetical protein~SPTR: A5CNI1 Putative uncharacterized protein gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0751 Arch_0752 Arch_0752 Arch_0752 852409 853629 + phosphofructokinase COGs: COG0205 6-phosphofructokinase~InterPro IPR000023~KEGG: bcv:Bcav_1905 phosphofructokinase~PFAM: phosphofructokinase~SPTR: D0WQL1 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase~PFAM: Phosphofructokinase gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0752 Arch_0753 Arch_0753 Arch_0753 853767 855032 + 3-deoxy-7-phosphoheptulonate synthase COGs: COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase~InterPro IPR002480~KEGG: bcv:Bcav_1906 phospho-2-dehydro-3-deoxyheptonate aldolase~PFAM: DAHP synthetase class II~PRIAM: 3-deoxy-7-phosphoheptulonate synthase~SPTR: C2BWS8 3-deoxy-7-phosphoheptulonate synthase~PFAM: Class-II DAHP synthetase family gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0753 Arch_0754 Arch_0754 Arch_0754 855035 856960 - serine/threonine protein kinase with PASTA sensor(s) COGs: COG2815 conserved hypothetical protein~InterProIPR011009:IPR008271:IPR020635:IPR002290:IPR 005543:IPR000719:IPR017442~KEGG: bcv:Bcav_1908 serine/threonine protein kinase with PASTA sensor(s)~PFAM: Serine/threonine-protein kinase-like domain%3B PASTA domain containing protein~SMART: serine/threonine protein kinase%3B Tyrosine-protein kinase%2C subgroup%2C catalytic domain%3B PASTA domain containing protein~SPTR: A7BDG0 Putative uncharacterized protein~PFAM: Protein kinase domain%3B PASTA domain gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0754 Arch_0755 Arch_0755 Arch_0755 857041 858054 - Lytic transglycosylase catalytic InterPro IPR002482:IPR018392:IPR008258~KEGG: rsa:RSal33209_2511 putative endopeptidase LytE precursor~PFAM: Lytic transglycosylase catalytic%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding LysM~SPTR: D0WQK8 Putative LysM domain protein~PFAM: Transglycosylase SLT domain%3B LysM domain gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0755 Arch_0756 Arch_0756 Arch_0756 858187 858549 + conserved hypothetical protein KEGG: bcv:Bcav_1909 hypothetical protein~SPTR: D0WQK7 Putative transcriptional regulatory protein gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0756 Arch_0757 Arch_0757 Arch_0757 858546 859598 - Polyprenyl synthetase COGs: COG0142 Geranylgeranyl pyrophosphate synthase~InterPro IPR008949:IPR000092~KEGG: krh:KRH_14940 polyprenyl synthase~PFAM: Polyprenyl synthetase~SPTR: D0WQK6 Polyprenyl synthetase~PFAM: Polyprenyl synthetase gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0757 Arch_0758 Arch_0758 Arch_0758 859706 860767 + hypothetical protein KEGG: bcv:Bcav_1912 hypothetical protein~SPTR: D0WQK5 Putative ferredoxin reductase gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0758 Arch_0759 Arch_0759 Arch_0759 860846 861244 + hypothetical protein InterPro IPR014729~KEGG: bcv:Bcav_1913 UspA domain protein~SPTR: C5C5H8 UspA domain protein~PFAM: Universal stress protein family gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0759 Arch_0760 Arch_0760 Arch_0760 861399 862931 + RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterProIPR000943:IPR013325:IPR013324:IPR005479:IPR 011991:IPR014284:IPR012760:IPR009042:IPR007627:IPR007624:I PR007630~KEGG: mlu:Mlut_13280 RNA polymerase sigma factor RpoD%2C C-terminal domain/RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 3 domain protein%3B sigma-70 region 2 domain protein%3B sigma-70 region 1.2%3B sigma-70 region 4 domain protein~SPTR: D0WQJ8 Carbamoyl-phosphate synthase L chain%2C ATP-binding~TIGRFAM: RNA polymerase sigma factor RpoD%3B RNA polymerase sigma factor%2C sigma-70 family~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 region 2%3B Sigma-70 factor%2C region 1.2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family%3B RNA polymerase sigma factor RpoD%2C C-terminal domain gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0760 Arch_0761 Arch_0761 Arch_0761 862971 863573 - DNA polymerase III%2C epsilon subunit COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease~InterPro IPR012337:IPR006055:IPR006054:IPR013520~KEGG: sro:Sros_3860 DNA polymerase III epsilon subunit and related 3'-5' exonuclease-like protein~PFAM: Exonuclease RNase T and DNA polymerase III~PRIAM: DNA-directed DNA polymerase~SMART: Exonuclease~SPTR: D0WQJ6 Exonuclease%2C DNA polymerase III%2C epsilon subunit family~TIGRFAM: DNA polymerase III%2C epsilon subunit~PFAM: Exonuclease~TIGRFAM: exonuclease%2C DNA polymerase III%2C epsilon subunit family gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0761 Arch_0762 Arch_0762 Arch_0762 863662 863865 + conserved hypothetical protein KEGG: jde:Jden_1426 hypothetical protein~SPTR: C7R4M1 Putative uncharacterized protein gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0762 Arch_0763 Arch_0763 Arch_0763 863952 866057 + DNA topoisomerase (ATP-hydrolyzing) COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit~InterProIPR001241:IPR000565:IPR013760:IPR003594:IPR 020568:IPR018522:IPR013759:IPR013506:IPR006171:IPR002288~KEGG: bcv:Bcav_1922 DNA topoisomerase (ATP-hydrolyzing)~PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein%3B ATP-binding region ATPase domain protein%3B TOPRIM domain protein%3B DNA gyrase subunit B domain protein~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA topoisomerase II%3B ATP-binding region ATPase domain protein~SPTR: D0WQJ3 Putative DNA gyrase subunit B~PFAM: Toprim domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B DNA gyrase B%3B DNA gyrase B subunit%2C carboxyl terminus gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0763 Arch_0764 Arch_0764 Arch_0764 866076 867119 + hypothetical protein InterPro IPR016181:IPR000182~KEGG: bcv:Bcav_1925 GCN5-related protein N-acetyltransferase~SPTR: C1RL77 Acetyltransferase (GNAT) family protein gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0764 Arch_0765 Arch_0765 Arch_0765 867119 868081 + GCN5-related N-acetyltransferase InterPro IPR016181:IPR000182~KEGG: bcv:Bcav_1925 GCN5-related protein N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: D0WQJ2 Acetyltransferase%2C GNAT family~PFAM: Acetyltransferase (GNAT) family gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0765 Arch_0766 Arch_0766 Arch_0766 868071 870485 - DNA topoisomerase (ATP-hydrolyzing) COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit~InterProIPR013760:IPR002205:IPR013758:IPR013757:IPR 006691~KEGG: bcv:Bcav_1928 DNA topoisomerase (ATP-hydrolyzing)~PFAM: DNA gyrase/topoisomerase IV subunit A%3B DNA gyrase repeat beta-propeller~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA gyrase/topoisomerase IV subunit A~SPTR: C5C5J3 DNA topoisomerase (ATP-hydrolyzing)~PFAM: DNA gyrase/topoisomerase IV%2C subunit A%3B DNA gyrase C-terminal domain%2C beta-propeller gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0766 Arch_0767 Arch_0767 Arch_0767 870588 871151 + conserved hypothetical protein KEGG: nca:Noca_2946 hypothetical protein~SPTR: D0WQI8 Putative uncharacterized protein gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0767 Arch_0768 Arch_0768 Arch_0768 871148 872266 + type I phosphodiesterase/nucleotide pyrophosphatase COGs: COG1524 Uncharacterized protein of the AP superfamily~InterPro IPR017850:IPR017849:IPR002591~KEGG: bcv:Bcav_1931 type I phosphodiesterase/nucleotide pyrophosphatase~PFAM: type I phosphodiesterase/nucleotide pyrophosphatase~SPTR: D0WQI7 Type I phosphodiesterase / nucleotide pyrophosphatase family protein~PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0768 Arch_0769 Arch_0769 Arch_0769 872266 872913 + Thymidine kinase COGs: COG1435 Thymidine kinase~InterPro IPR001267~KEGG: bcv:Bcav_1932 thymidine kinase~PFAM: thymidine kinase~PRIAM: Thymidine kinase~SPTR: D0WQI6 Thymidine kinase~PFAM: Thymidine kinase gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0769 Arch_0770 Arch_0770 Arch_0770 872915 873973 - DNA-binding protein KEGG: bcv:Bcav_1933 DNA-binding protein~SPTR: D0WQI5 Putative DNA-binding protein~PFAM: Protein of unknown function (DUF3071) gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0770 Arch_0771 Arch_0771 Arch_0771 874137 874436 + conserved hypothetical protein KEGG: bcv:Bcav_1935 hypothetical protein~SPTR: D0WQI4 Putative uncharacterized protein gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0771 Arch_0772 Arch_0772 Arch_0772 874515 875123 + conserved hypothetical protein KEGG: tfu:Tfu_1934 hypothetical protein~SPTR: D0WQI3 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3710) gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0772 Arch_0773 Arch_0773 Arch_0773 875124 875375 + hypothetical protein KEGG: ace:Acel_1194 nucleic acid binding%2C OB-fold%2C tRNA/helicase-type~SPTR: D0WQI2 Putative nucleic acid binding%2C OB-fold%2C tRNA/helicase-type gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0773 Arch_0774 Arch_0774 Arch_0774 875368 876054 + conserved hypothetical protein InterPro IPR016566~KEGG: xce:Xcel_1919 hypothetical protein~SPTR: D0WQI0 Putative integral membrane protein~PFAM: Protein of unknown function (DUF3159) gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0774 Arch_0775 Arch_0775 Arch_0775 875966 876706 - TrkA-N domain protein COGs: COG0569 K+ transport systems NAD-binding component~InterPro IPR006036:IPR016040:IPR003148:IPR006037~KEGG: bcv:Bcav_1941 TrkA-N domain protein~PFAM: TrkA-N domain protein%3B TrkA-C domain protein~SPTR: D0WQH9 Trk-type K+ transport system%2C NAD-binding component~PFAM: TrkA-N domain%3B TrkA-C domain gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0775 Arch_0776 Arch_0776 Arch_0776 876703 877356 - TrkA-N domain protein COGs: COG0569 K+ transport systems NAD-binding component~InterPro IPR016040:IPR003148:IPR006037~KEGG: jde:Jden_1405 TrkA-N domain protein~PFAM: TrkA-N domain protein~SPTR: D0WQH8 Trk-type K+ transport system%2C NAD-binding component~PFAM: TrkA-N domain%3B TrkA-C domain gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0776 Arch_0777 Arch_0777 Arch_0777 877420 879264 + hypothetical protein KEGG: tcu:Tcur_1714 putative aminoacid/polyamine transporter%2C permease protein~SPTR: D0WQH7 Putative integral membrane protein gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0777 Arch_0778 Arch_0778 Arch_0778 879504 879632 + hypothetical protein gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0778 Arch_0779 Arch_0779 Arch_0779 879758 880014 + pseudogene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0779 Arch_0780 Arch_0780 Arch_0780 880222 882102 + Site-specific DNA-methyltransferase (adenine-specific) COGs: COG2189 Adenine specific DNA methylase Mod~InterPro IPR002295:IPR002052:IPR002941~KEGG: pct:PC1_0848 site-specific DNA-methyltransferase (adenine-specific)~PFAM: DNA methylase N-4/N-6 domain protein~PRIAM: Site-specific DNA-methyltransferase (adenine-specific)~SPTR: C6D9W3 Site-specific DNA-methyltransferase (Adenine-specific)~PFAM: DNA methylase gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0780 Arch_0781 Arch_0781 Arch_0781 882118 885084 + Type III site-specific deoxyribonuclease COGs: COG3587 Restriction endonuclease~InterPro IPR006935~KEGG: bfa:Bfae_05380 restriction endonuclease~PFAM: type III restriction protein res subunit~PRIAM: Type III site-specific deoxyribonuclease~SPTR: C7MHJ5 Restriction endonuclease~PFAM: Type III restriction enzyme%2C res subunit gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0781 Arch_0782 Arch_0782 Arch_0782 885097 887943 + SNF2-related protein COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family~InterPro IPR014001:IPR001650:IPR014021:IPR000330~KEGG: bfa:Bfae_05330 DNA/RNA helicase%2C superfamily II%2C SNF2 family~PFAM: SNF2-related protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: C7MHJ1 DNA/RNA helicase%2C superfamily II%2C SNF2 family~PFAM: Helicase conserved C-terminal domain%3B SNF2 family N-terminal domain gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0782 Arch_0783 Arch_0783 Arch_0783 888102 888285 + pseudogene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0783 Arch_0784 Arch_0784 Arch_0784 888757 889983 - Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR012337:IPR001584:IPR002514~KEGG: cur:cur_1459 transposase for insertion sequence~PFAM: Integrase catalytic region%3B transposase IS3/IS911 family protein~SPTR: Q8RMK1 Transposase subunit B~PFAM: Integrase core domain gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0784 Arch_0785 Arch_0785 Arch_0785 890148 890429 + transposase IS3/IS911 family protein InterPro IPR002514~KEGG: kse:Ksed_22010 transposase~PFAM: transposase IS3/IS911 family protein~SPTR: C2BM30 ISMyma01 transposase~PFAM: Transposase gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0785 Arch_0786 Arch_0786 Arch_0786 890483 891304 + Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR012337:IPR001584~KEGG: kse:Ksed_22000 transposase~PFAM: Integrase catalytic region~SPTR: A7B9Y7 Putative uncharacterized protein~PFAM: Integrase core domain gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0786 Arch_0787 Arch_0787 Arch_0787 891407 891526 + pseudogene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0787 Arch_0788 Arch_0788 Arch_0788 891595 892872 + protein of unknown function DUF214 InterPro IPR003838~KEGG: cdl:CDR20291_1803 ABC transporter%2C permease protein~PFAM: protein of unknown function DUF214~SPTR: Q187I6 ABC transporter%2C permease protein~manually curated~PFAM: Predicted permease gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0788 Arch_0789 Arch_0789 Arch_0789 892882 893538 + ABC transporter related protein COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR017871:IPR003593:IPR003439~KEGG: cdl:CDR20291_1804 abc transporter%2C atp-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: Q187I8 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0789 Arch_0790 Arch_0790 Arch_0790 893538 894914 + protein of unknown function DUF214 InterPro IPR003838~KEGG: cdl:CDR20291_1805 ABC transporter%2C permease protein~PFAM: protein of unknown function DUF214~SPTR: B6FLT8 Putative uncharacterized protein~PFAM: Predicted permease gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0790 Arch_0791 Arch_0791 Arch_0791 895130 895396 + 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase~InterPro IPR000031~KEGG: chy:CHY_1069 phosphoribosylaminoimidazole carboxylase%2C catalytic subunit~PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase~SPTR: Q3AD69 Phosphoribosylaminoimidazole carboxylase%2C catalytic subunit~PFAM: AIR carboxylase gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0791 Arch_0792 Arch_0792 Arch_0792 895467 895748 + transposase IS3/IS911 family protein InterPro IPR002514~KEGG: kse:Ksed_22010 transposase~PFAM: transposase IS3/IS911 family protein~SPTR: C2BM30 ISMyma01 transposase~PFAM: Transposase gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0792 Arch_0793 Arch_0793 Arch_0793 895802 896623 + Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR012337:IPR001584~KEGG: kse:Ksed_22000 transposase~PFAM: Integrase catalytic region~SPTR: A7B9Y7 Putative uncharacterized protein~PFAM: Integrase core domain gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0793 Arch_0794 Arch_0794 Arch_0794 896834 897004 + pseudogene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0794 Arch_0795 Arch_0795 Arch_0795 897002 897947 + pseudogene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0795 Arch_0796 Arch_0796 Arch_0796 898032 900710 + aconitate hydratase 1 COGs: COG1048 Aconitase A~InterProIPR001030:IPR015928:IPR018136:IPR015931:IPR 015932:IPR006249:IPR000573~KEGG: bcv:Bcav_1946 aconitate hydratase 1~PFAM: aconitate hydratase domain protein~SPTR: C0W378 Aconitate hydratase~TIGRFAM: aconitate hydratase 1~PFAM: Aconitase C-terminal domain%3B Aconitase family (aconitate hydratase)~TIGRFAM: aconitate hydratase 1 gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0796 Arch_0797 Arch_0797 Arch_0797 900783 902651 + deoxyxylulose-5-phosphate synthase COGs: COG1154 Deoxyxylulose-5-phosphate synthase~InterProIPR009014:IPR000169:IPR005474:IPR015941:IPR 005477:IPR005475:IPR005476~KEGG: xce:Xcel_1898 deoxyxylulose-5-phosphate synthase~PFAM: Transketolase central region%3B Transketolase domain protein~PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase~SPTR: D0WQH4 1-deoxy-D-xylulose-5-phosphate synthase~TIGRFAM: deoxyxylulose-5-phosphate synthase~PFAM: Dehydrogenase E1 component%3B Transketolase%2C C-terminal domain%3B Transketolase%2C pyrimidine binding domain~TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0797 Arch_0798 Arch_0798 Arch_0798 902652 903848 - 3'-5' exonuclease COGs: COG0349 Ribonuclease D~InterPro IPR012337:IPR002562:IPR002121~KEGG: bcv:Bcav_1962 3'-5' exonuclease~PFAM: 3'-5' exonuclease%3B HRDC domain protein~SMART: 3'-5' exonuclease%3B HRDC domain protein~SPTR: D0WQH3 Putative ribonuclease D~PFAM: 3'-5' exonuclease%3B HRDC domain~TIGRFAM: ribonuclease D gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0798 Arch_0799 Arch_0799 Arch_0799 903848 904429 - conserved hypothetical protein KEGG: bcv:Bcav_1965 hypothetical protein~SPTR: D0WQH2 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3000) gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0799 Arch_0800 Arch_0800 Arch_0800 904484 906217 - malto-oligosyltrehalose trehalohydrolase COGs: COG0296 1 4-alpha-glucan branching enzyme~InterProIPR017853:IPR014756:IPR006589:IPR012768:IPR 013783:IPR013781:IPR004193:IPR006047~KEGG: bcv:Bcav_1971 malto-oligosyltrehalose trehalohydrolase~PFAM: alpha amylase catalytic region%3B glycoside hydrolase family 13 domain protein~SMART: alpha amylase catalytic sub domain~SPTR: C5C5N5 Malto-oligosyltrehalose trehalohydrolase~TIGRFAM: malto-oligosyltrehalose trehalohydrolase~PFAM: Alpha amylase%2C catalytic domain~TIGRFAM: malto-oligosyltrehalose trehalohydrolase gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0800 Arch_0801 Arch_0801 Arch_0801 906214 908724 - malto-oligosyltrehalose synthase COGs: COG3280 Maltooligosyl trehalose synthase~InterProIPR017853:IPR006589:IPR013781:IPR012767:IPR 006047~KEGG: bcv:Bcav_1972 malto-oligosyltrehalose synthase~PFAM: alpha amylase catalytic region~SMART: alpha amylase catalytic sub domain~SPTR: C5C5N6 Malto-oligosyltrehalose synthase~TIGRFAM: malto-oligosyltrehalose synthase~PFAM: Alpha amylase%2C catalytic domain~TIGRFAM: malto-oligosyltrehalose synthase gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0801 Arch_0802 Arch_0802 Arch_0802 908761 911019 - glycogen debranching enzyme GlgX COGs: COG1523 Type II secretory pathway pullulanase PulA and related glycosidase~InterProIPR017853:IPR014756:IPR006589:IPR013783:IPR 013781:IPR011837:IPR004193:IPR006047~KEGG: kra:Krad_3073 glycogen debranching enzyme GlgX~PFAM: glycoside hydrolase family 13 domain protein%3B alpha amylase catalytic region~SMART: alpha amylase catalytic sub domain~SPTR: D0WQH0 Glycogen debranching enzyme GlgX~TIGRFAM: glycogen debranching enzyme GlgX~PFAM: Alpha amylase%2C catalytic domain%3B Carbohydrate-binding module 48 (Isoamylase N-terminal domain)~TIGRFAM: glycogen debranching enzyme GlgX gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0802 Arch_0803 Arch_0803 Arch_0803 911052 911531 - hypothetical protein KEGG: hypothetical protein~SPTR: A5P8J2 Putative uncharacterized protein gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0803 Arch_0804 Arch_0804 Arch_0804 912503 913309 - protein of unknown function DUF81 COGs: COG0730 permease~InterPro IPR002781~KEGG: blo:BL1515 hypothetical protein~PFAM: protein of unknown function DUF81~SPTR: A7B8S5 Putative uncharacterized protein~manually curated~PFAM: Sulfite exporter TauE/SafE gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0804 Arch_0805 Arch_0805 Arch_0805 913439 913693 - hypothetical protein KEGG: xce:Xcel_1937 hypothetical protein~SPTR: D0WM99 Putative respose regulatory protein gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0805 Arch_0806 Arch_0806 Arch_0806 913693 915876 - GTP-binding protein HSR1-related protein COGs: COG0370 Fe2+ transport system protein B~InterPro IPR002917:IPR011619:IPR011642:IPR011640~KEGG: xce:Xcel_1938 ferrous iron transport protein B~PFAM: GTP-binding protein HSR1-related%3B Ferrous iron transport protein B domain protein%3B nucleoside recognition domain protein%3B Ferrous iron transport B domain protein~SPTR: D0WM98 Iron(II) transport protein B~PFAM: Ferrous iron transport protein B%3B Ferrous iron transport protein B C terminus%3B Nucleoside recognition~TIGRFAM: ferrous iron transporter FeoB%3B small GTP-binding protein domain gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0806 Arch_0807 Arch_0807 Arch_0807 915897 916097 - pseudogene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0807 Arch_0808 Arch_0808 Arch_0808 916587 917300 + YodA domain protein InterPro IPR011038:IPR012674:IPR015304~KEGG: apr:Apre_0499 YodA domain protein~PFAM: YodA domain protein~SPTR: C7RGD5 YodA domain protein~PFAM: YodA gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0808 Arch_0809 Arch_0809 Arch_0809 917337 918641 + periplasmic solute binding protein COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin~InterPro IPR006128:IPR006129:IPR006127~KEGG: fma:FMG_0225 zinc ABC transporter substrate-binding protein~PFAM: periplasmic solute binding protein~SPTR: B0S0A8 Zinc ABC transporter substrate-binding protein~PFAM: Periplasmic solute binding protein family gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0809 Arch_0810 Arch_0810 Arch_0810 918655 919329 + ABC transporter related protein COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component~InterPro IPR003593:IPR003439~KEGG: fma:FMG_0226 zinc ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C2D875 ABC superfamily ATP binding cassette transporter%2C ABC protein~PFAM: ABC transporter gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0810 Arch_0811 Arch_0811 Arch_0811 919322 920155 + ABC-3 protein COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components~InterPro IPR001626~KEGG: apr:Apre_0502 ABC-3 protein~PFAM: ABC-3 protein~SPTR: C2BFU5 ABC superfamily ATP binding cassette transporter%2C membrane protein~PFAM: ABC 3 transport family gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0811 Arch_0812 Arch_0812 Arch_0812 920136 921518 - L-serine dehydratase 1 COGs: COG1760 L-serine deaminase~InterPro IPR004644:IPR005131:IPR005130~KEGG: aau:AAur_3830 L-serine ammonia-lyase~PFAM: serine dehydratase alpha chain%3B serine dehydratase beta chain~PRIAM: L-serine ammonia-lyase~SPTR: A1RB97 L-serine ammonia-lyase~TIGRFAM: L-serine dehydratase 1~PFAM: Serine dehydratase alpha chain%3B Serine dehydratase beta chain~TIGRFAM: L-serine dehydratase%2C iron-sulfur-dependent%2C single chain form gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0812 Arch_0813 Arch_0813 Arch_0813 921674 923686 + threonyl-tRNA synthetase COGs: COG0441 Threonyl-tRNA synthetase~InterProIPR018158:IPR018163:IPR004154:IPR006195:IPR 002320:IPR012947:IPR002314~KEGG: bfa:Bfae_13900 threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase~PFAM: tRNA synthetase class II (G H P and S)%3B Threonyl/alanyl tRNA synthetase SAD%3B Anticodon-binding domain protein~SPTR: D0YSQ6 Threonyl-tRNA synthetase~TIGRFAM: threonyl-tRNA synthetase~PFAM: Anticodon binding domain%3B Threonyl and Alanyl tRNA synthetase second additional domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: threonyl-tRNA synthetase gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0813 Arch_0814 Arch_0814 Arch_0814 923695 924330 + CDP-alcohol phosphatidyltransferase COGs: COG0558 Phosphatidylglycerophosphate synthase~InterPro IPR017871:IPR000462~KEGG: xce:Xcel_1658 CDP-alcohol phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase~SPTR: D0WQG4 Putative CDP-alcohol phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0814 Arch_0815 Arch_0815 Arch_0815 924308 925270 + lipid A biosynthesis acyltransferase COGs: COG1560 Lauroyl/myristoyl acyltransferase~InterPro IPR004960~KEGG: xce:Xcel_1659 lipid A biosynthesis acyltransferase~PFAM: lipid A biosynthesis acyltransferase~SPTR: D0WQG3 Lipid A biosynthesis lauroyl acyltransferase~PFAM: Bacterial lipid A biosynthesis acyltransferase gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0815 Arch_0816 Arch_0816 Arch_0816 925267 926403 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: xce:Xcel_1660 glycosyl transferase group 1~PFAM: glycosyl transferase group 1~SPTR: D0WQG2 Phosphatidylinositol alpha-mannosyltransferase~PFAM: Glycosyl transferases group 1 gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0816 Arch_0817 Arch_0817 Arch_0817 926403 926987 + conserved hypothetical protein KEGG: xce:Xcel_1661 hypothetical protein~SPTR: D0WQG1 Putative uncharacterized protein gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0817 Arch_0818 Arch_0818 Arch_0818 926980 928131 + membrane protein COGs: COG2339 membrane protein~KEGG: bcv:Bcav_1985 membrane protein~SPTR: C5C5P9 Membrane protein gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0818 Arch_0819 Arch_0819 Arch_0819 928141 928701 + NUDIX hydrolase InterPro IPR020476:IPR015797:IPR020084:IPR000086~KEGG: bcv:Bcav_1987 NUDIX hydrolase~PFAM: NUDIX hydrolase~SPTR: D0WQF9 MutT/NUDIX family protein~PFAM: NUDIX domain gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0819 Arch_0820 Arch_0820 Arch_0820 928776 929540 + protein of unknown function DUF28 COGs: COG0217 conserved hypothetical protein~InterPro IPR002876:IPR017856~KEGG: ami:Amir_2110 protein of unknown function DUF28~PFAM: protein of unknown function DUF28~SPTR: D0WQF1 Protein YebC~PFAM: Domain of unknown function DUF28~TIGRFAM: conserved hypothetical protein TIGR01033 gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0820 Arch_0821 Arch_0821 Arch_0821 929541 930161 + crossover junction endodeoxyribonuclease RuvC COGs: COG0817 Holliday junction resolvasome endonuclease subunit~InterPro IPR002176:IPR012337:IPR020563~KEGG: xce:Xcel_1666 crossover junction endodeoxyribonuclease RuvC~PFAM: Crossover junction endodeoxyribonuclease RuvC~PRIAM: Crossover junction endodeoxyribonuclease~SPTR: D0WQF0 Crossover junction endodeoxyribonuclease RuvC~TIGRFAM: crossover junction endodeoxyribonuclease RuvC~PFAM: Crossover junction endodeoxyribonuclease RuvC~TIGRFAM: crossover junction endodeoxyribonuclease RuvC gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0821 Arch_0822 Arch_0822 Arch_0822 930200 930799 + Holliday junction DNA helicase RuvA COGs: COG0632 Holliday junction resolvasome DNA-binding subunit~InterProIPR010994:IPR016027:IPR011114:IPR003583:IPR 012340:IPR000085:IPR013849~KEGG: bcv:Bcav_1993 Holliday junction DNA helicase RuvA~PFAM: DNA recombination protein RuvA domain I%3B RuvA domain protein~SMART: Helix-hairpin-helix DNA-binding class 1~SPTR: D0WQE9 Holliday junction DNA helicase RuvA~TIGRFAM: Holliday junction DNA helicase RuvA~PFAM: RuvA%2C C-terminal domain%3B RuvA N terminal domain~TIGRFAM: Holliday junction DNA helicase%2C RuvA subunit gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0822 Arch_0823 Arch_0823 Arch_0823 930802 931818 + Holliday junction DNA helicase RuvB COGs: COG2255 Holliday junction resolvasome helicase subunit~InterProIPR008823:IPR003593:IPR011991:IPR004605:IPR 008824:IPR003959~KEGG: bcv:Bcav_1994 Holliday junction DNA helicase RuvB~PFAM: AAA ATPase central domain protein%3B Holliday junction DNA helicase RuvB domain~SMART: AAA ATPase~SPTR: D0WQE8 Holliday junction DNA helicase RuvB~TIGRFAM: Holliday junction DNA helicase RuvB~PFAM: Holliday junction DNA helicase ruvB C-terminus%3B Holliday junction DNA helicase ruvB N-terminus~TIGRFAM: Holliday junction DNA helicase%2C RuvB subunit gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0823 Arch_0824 Arch_0824 Arch_0824 931958 932323 + preprotein translocase%2C YajC subunit InterPro IPR003849~KEGG: xce:Xcel_1669 preprotein translocase%2C YajC subunit~PFAM: YajC family protein~SPTR: D0WQE7 Putative preprotein translocase%2C YajC subunit~TIGRFAM: preprotein translocase%2C YajC subunit~PFAM: Preprotein translocase subunit~TIGRFAM: preprotein translocase%2C YajC subunit gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0824 Arch_0825 Arch_0825 Arch_0825 932358 934214 + protein-export membrane protein SecD COGs: COG0342 Preprotein translocase subunit SecD~InterPro IPR005791:IPR003335~KEGG: bcv:Bcav_1996 protein-export membrane protein SecD~SPTR: D0WQE6 Protein-export membrane protein SecD~TIGRFAM: protein-export membrane protein SecD%3B protein-export membrane protein%2C SecD/SecF family~PFAM: MMPL family~TIGRFAM: protein-export membrane protein SecD%3B protein-export membrane protein%2C SecD/SecF family gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0825 Arch_0826 Arch_0826 Arch_0826 934214 935311 + protein-export membrane protein SecF COGs: COG0341 Preprotein translocase subunit SecF~InterPro IPR003335:IPR005665~KEGG: bcv:Bcav_1997 protein-export membrane protein SecF~PFAM: SecD/SecF/SecDF export membrane protein~SPTR: D0WQE5 Protein-export membrane protein SecF~TIGRFAM: protein-export membrane protein SecF%3B protein-export membrane protein%2C SecD/SecF family~PFAM: Protein export membrane protein~TIGRFAM: ATP synthase subunit 6 (eukaryotes)%2Calso subunit A (prokaryotes)%3B protein-export membrane protein%2C SecD/SecF family%3B protein-export membrane protein SecF gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0826 Arch_0827 Arch_0827 Arch_0827 935308 935856 + phosphoribosyltransferase COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein~InterPro IPR000836~KEGG: bcv:Bcav_1998 adenine phosphoribosyltransferase~PFAM: phosphoribosyltransferase~SPTR: D0WQE4 Adenine phosphoribosyltransferase~PFAM: Phosphoribosyl transferase domain~TIGRFAM: adenine phosphoribosyltransferase gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0827 Arch_0828 Arch_0828 Arch_0828 935992 938310 + (p)ppGpp synthetase I%2C SpoT/RelA COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase~InterProIPR012676:IPR003607:IPR012675:IPR004811:IPR 006674:IPR007685:IPR004095:IPR002912~KEGG: bcv:Bcav_1999 (p)ppGpp synthetase I%2C SpoT/RelA~PFAM: RelA/SpoT domain protein%3B metal-dependent phosphohydrolase HD sub domain%3B TGS domain protein%3B amino acid-binding ACT domain protein~PRIAM: GTP diphosphokinase~SMART: metal-dependent phosphohydrolase HD region~SPTR: D0WQE3 GTP diphosphokinase~TIGRFAM: RelA/SpoT family protein~PFAM: HD domain%3B ACT domain%3B TGS domain%3B Region found in RelA / SpoT proteins~TIGRFAM: (p)ppGpp synthetase%2C RelA/SpoT family gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0828 Arch_0829 Arch_0829 Arch_0829 938234 938842 - hypothetical protein KEGG: bfa:Bfae_14020 hypothetical protein~SPTR: C7MCC6 Putative uncharacterized protein gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0829 Arch_0830 Arch_0830 Arch_0830 938944 940272 - protein of unknown function DUF349 InterPro IPR007139~KEGG: bcv:Bcav_2001 protein of unknown function DUF349~PFAM: protein of unknown function DUF349~SPTR: C5C5R5 Putative uncharacterized protein~PFAM: Domain of Unknown Function (DUF349) gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0830 Arch_0831 Arch_0831 Arch_0831 940376 941101 + Zn-dependent hydrolase%2C glyoxylase COGs: COG0491 Zn-dependent hydrolase including glyoxylase~KEGG: kse:Ksed_15250 Zn-dependent hydrolase%2C glyoxylase~SPTR: D0WQE0 Metallo-beta-lactamase family protein~PFAM: Metallo-beta-lactamase superfamily gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0831 Arch_0832 Arch_0832 Arch_0832 941169 942494 + histidyl-tRNA synthetase COGs: COG0124 Histidyl-tRNA synthetase~InterProIPR004154:IPR004516:IPR006195:IPR015807:IPR 002314~KEGG: xce:Xcel_1680 histidyl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Anticodon-binding domain protein~PRIAM: Histidine--tRNA ligase~SPTR: D0WQD9 Histidine--tRNA ligase~TIGRFAM: histidyl-tRNA synthetase~PFAM: Anticodon binding domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: histidyl-tRNA synthetase gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0832 Arch_0833 Arch_0833 Arch_0833 942498 944207 + conserved hypothetical protein KEGG: kse:Ksed_08870 hypothetical protein~SPTR: D0WQD8 Putative ATP/GTP-binding protein~PFAM: Dynamin family gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0833 Arch_0834 Arch_0834 Arch_0834 944204 945796 + GTP-binding protein HSR1-related protein InterPro IPR002917~KEGG: kse:Ksed_08880 predicted GTPase~PFAM: GTP-binding protein HSR1-related~SPTR: C0W3Q0 ATP/GTP-binding protein~PFAM: GTPase of unknown function gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0834 Arch_0835 Arch_0835 Arch_0835 945882 947744 - DEAD/DEAH box helicase domain protein COGs: COG0513 Superfamily II DNA and RNA helicase~InterProIPR000629:IPR014001:IPR001650:IPR014021:IPR 014014:IPR011545:IPR005580~KEGG: jde:Jden_1307 DEAD/DEAH box helicase domain protein~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein%3B DbpA RNA-binding domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: D0WN23 ATP-dependent RNA helicase DeaD~PFAM: Helicase conserved C-terminal domain%3B DbpA RNA binding domain%3B DEAD/DEAH box helicase gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0835 Arch_0836 Arch_0836 Arch_0836 947896 949269 - major facilitator superfamily MFS_1 InterPro IPR016196:IPR011701~KEGG: xcb:XC_1279 MFS transporter~PFAM: major facilitator superfamily MFS_1~SPTR: C2BTC3 Major facilitator superfamily permease~PFAM: Major Facilitator Superfamily gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0836 Arch_0837 Arch_0837 Arch_0837 949410 951317 + aspartyl-tRNA synthetase COGs: COG0173 Aspartyl-tRNA synthetase~InterProIPR002312:IPR016027:IPR006195:IPR012340:IPR 004524:IPR004365:IPR004364:IPR004115~KEGG: xce:Xcel_1682 aspartyl-tRNA synthetase~PFAM: tRNA synthetase class II (D K and N)%3B nucleic acid binding OB-fold tRNA/helicase-type%3B GAD domain protein~SPTR: C0W3P3 Aspartate--tRNA ligase~TIGRFAM: aspartyl-tRNA synthetase~PFAM: GAD domain%3B tRNA synthetases class II (D%2C K and N)%3B OB-fold nucleic acid binding domain~TIGRFAM: aspartyl-tRNA synthetase%2C bacterial type gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0837 Arch_0838 Arch_0838 Arch_0838 951405 952832 + ErfK/YbiS/YcfS/YnhG family protein InterPro IPR005490~KEGG: bfa:Bfae_10350 hypothetical protein~PFAM: ErfK/YbiS/YcfS/YnhG family protein~SPTR: C0W945 Putative uncharacterized protein (Fragment)~PFAM: Putative peptidoglycan binding domain%3B L%2CD-transpeptidase catalytic domain gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0838 Arch_0839 Arch_0839 Arch_0839 953004 955280 - integral membrane protein COGs: COG2409 drug exporter of the RND superfamily~InterPro IPR000731~KEGG: bcv:Bcav_2009 integral membrane protein~SPTR: C1RHX7 Predicted RND superfamily drug exporter~PFAM: MMPL family gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0839 Arch_0840 Arch_0840 Arch_0840 955379 956707 + AAA ATPase central domain protein COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase~InterPro IPR003593:IPR003959~KEGG: bcv:Bcav_2010 AAA ATPase central domain protein~PFAM: AAA ATPase central domain protein~SMART: AAA ATPase~SPTR: C1RHX6 Recombination protein MgsA~PFAM: MgsA AAA+ ATPase C terminal%3B Holliday junction DNA helicase ruvB N-terminus gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0840 Arch_0841 Arch_0841 Arch_0841 956817 957437 + ribosomal protein S4 COGs: COG0522 Ribosomal protein S4 and related protein~InterPro IPR018079:IPR002942:IPR005709:IPR001912~KEGG: bcv:Bcav_2011 ribosomal protein S4~PFAM: RNA-binding S4 domain protein%3B ribosomal protein S4~SMART: RNA-binding S4 domain protein~SPTR: D0WN10 Ribosomal protein S4~TIGRFAM: ribosomal protein S4~PFAM: Ribosomal protein S4/S9 N-terminal domain%3B S4 domain~TIGRFAM: ribosomal protein S4%2C bacterial/organelle type gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0841 Arch_0842 Arch_0842 Arch_0842 957584 960256 + alanyl-tRNA synthetase COGs: COG0013 Alanyl-tRNA synthetase~InterProIPR018164:IPR018162:IPR018163:IPR018165:IPR 002318:IPR012947:IPR003156~KEGG: xce:Xcel_1689 alanyl-tRNA synthetase~PFAM: Alanyl-tRNA synthetase%2C class IIc-like%3B Threonyl/alanyl tRNA synthetase SAD%3B phosphoesterase DHHA1~SPTR: D0WN09 Alanine--tRNA ligase~TIGRFAM: alanyl-tRNA synthetase~PFAM: DHHA1 domain%3B Threonyl and Alanyl tRNA synthetase second additional domain%3B tRNA synthetases class II (A)~TIGRFAM: alanyl-tRNA synthetase gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0842 Arch_0843 Arch_0843 Arch_0843 960274 960735 + Holliday junction resolvase YqgF COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)~InterPro IPR012337:IPR006641:IPR005227~KEGG: bcv:Bcav_2015 Holliday junction resolvase YqgF~PFAM: Holliday junction resolvase YqgF~SMART: Resolvase RNase H domain protein fold~SPTR: D0WN08 Putative Holliday junction resolvase~PFAM: Uncharacterised protein family (UPF0081)~TIGRFAM: conserved hypothetical protein TIGR00250 gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0843 Arch_0844 Arch_0844 Arch_0844 960736 961857 + aminodeoxychorismate lyase COGs: COG1559 periplasmic solute-binding protein~InterPro IPR003770~KEGG: bcv:Bcav_2016 aminodeoxychorismate lyase~PFAM: aminodeoxychorismate lyase~SPTR: C0W3N4 Aminodeoxychorismate lyase~PFAM: YceG-like family~TIGRFAM: conserved hypothetical protein TIGR00247 gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0844 Arch_0845 Arch_0845 Arch_0845 961857 962564 + hypothetical protein KEGG: gbr:Gbro_2323 shikimate-5-dehydrogenase~SPTR: D0LCP7 Shikimate-5-dehydrogenase gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0845 Arch_0846 Arch_0846 Arch_0846 962591 963139 + hypothetical protein KEGG: dar:Daro_0637 Type 4 prepilin peptidase 1. aspartic peptidase. MEROPS family A24A~SPTR: Q47ID7 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A~PFAM: Type IV leader peptidase family gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0846 Arch_0847 Arch_0847 Arch_0847 963139 964356 + chorismate synthase COGs: COG0082 Chorismate synthase~InterPro IPR000453:IPR020541~KEGG: msm:MSMEG_3030 chorismate synthase~PFAM: chorismate synthase~PRIAM: Chorismate synthase~SPTR: C0W3N1 Chorismate synthase~TIGRFAM: chorismate synthase~manually curated~PFAM: Chorismate synthase~TIGRFAM: chorismate synthase gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0847 Arch_0848 Arch_0848 Arch_0848 964356 965903 + 3-dehydroquinate synthase COGs: COG0337 3-dehydroquinate synthetase~InterPro IPR000623:IPR016037:IPR002658~KEGG: sgr:SGR_6039 putative shikimate kinase and 3-dehydroquinate synthase~PFAM: 3-dehydroquinate synthase%3B shikimate kinase~PRIAM: Shikimate kinase.%2C 3-dehydroquinate synthase~SPTR: C9NI27 3-dehydroquinate synthase~TIGRFAM: 3-dehydroquinate synthase~PFAM: 3-dehydroquinate synthase%3B Shikimate kinase~TIGRFAM: 3-dehydroquinate synthase gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0848 Arch_0849 Arch_0849 Arch_0849 965900 966451 + shikimate kinase KEGG: fal:FRAAL5246 shikimate kinase~SPTR: Q0RF71 Shikimate kinase I~PFAM: Shikimate kinase gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0849 Arch_0850 Arch_0850 Arch_0850 966517 967074 + translation elongation factor P COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)~InterProIPR008991:IPR016027:IPR013852:IPR020599:IPR 014722:IPR012340:IPR011768:IPR013185:IPR001059:IPR015365~KEGG: kra:Krad_3009 translation elongation factor P~PFAM: Elongation factor KOW domain protein%3B Elongation factor P/YeiP protein%3B Elongation factor P~SPTR: C0W1L9 Elongation factor P~TIGRFAM: translation elongation factor P~PFAM: Elongation factor P%2C C-terminal%3B Elongation factor P (EF-P) KOW-like domain%3B Elongation factor P (EF-P) OB domain~TIGRFAM: translation elongation factor P gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0850 Arch_0851 Arch_0851 Arch_0851 967074 967553 + NusB antitermination factor COGs: COG0781 Transcription termination factor~InterPro IPR006027:IPR011605~KEGG: sco:SCO1490 transcription antitermination protein NusB~PFAM: NusB/RsmB/TIM44~SPTR: D0WMZ9 B-like utilization substance protein~TIGRFAM: transcription antitermination factor NusB~PFAM: NusB family~TIGRFAM: transcription antitermination factor NusB gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0851 Arch_0852 Arch_0852 Arch_0852 967755 968066 + conserved hypothetical protein KEGG: cgb:cg1811 hypothetical protein~SPTR: C2GHU8 Integration host factor gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0852 Arch_0853 Arch_0853 Arch_0853 968127 968699 + guanylate kinase COGs: COG0194 Guanylate kinase~InterPro IPR020590:IPR008145:IPR008144:IPR017665~KEGG: krh:KRH_13290 guanylate kinase~PFAM: guanylate kinase~PRIAM: Guanylate kinase~SMART: guanylate kinase/L-type calcium channel region~SPTR: D0WMZ4 Guanylate kinase~TIGRFAM: guanylate kinase~PFAM: Guanylate kinase~TIGRFAM: guanylate kinase gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0853 Arch_0854 Arch_0854 Arch_0854 968745 969008 + DNA-directed RNA polymerase%2C omega subunit InterPro IPR006110:IPR003716~KEGG: kse:Ksed_12730 DNA-directed RNA polymerase%2C omega subunit~PFAM: RNA polymerase Rpb6~SPTR: D0WMZ3 DNA-directed RNA polymerase%2C omega subunit~TIGRFAM: DNA-directed RNA polymerase%2C omega subunit~PFAM: RNA polymerase Rpb6~TIGRFAM: DNA-directed RNA polymerase%2C omega subunit gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0854 Arch_0855 Arch_0855 Arch_0855 969010 970311 + phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase~InterPro IPR003382:IPR007085:IPR005252~KEGG: xce:Xcel_1717 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase~PFAM: DNA/pantothenate metabolism flavoprotein domain protein%3B flavoprotein~PRIAM: Phosphopantothenate--cysteine ligase~SPTR: D1BSP8 Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase~TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase~PFAM: DNA / pantothenate metabolism flavoprotein%3B Flavoprotein~TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase%2C prokaryotic gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0855 Arch_0856 Arch_0856 Arch_0856 970308 971504 + S-adenosylmethionine synthetase COGs: COG0192 S-adenosylmethionine synthetase~InterPro IPR002133~KEGG: jde:Jden_1315 S-adenosylmethionine synthetase~PFAM: S-adenosylmethionine synthetase~PRIAM: Methionine adenosyltransferase~SPTR: D1BH13 Methionine adenosyltransferase~TIGRFAM: S-adenosylmethionine synthetase~PFAM: S-adenosylmethionine synthetase%2C C-terminal domain%3B S-adenosylmethionine synthetase%2C central domain%3B S-adenosylmethionine synthetase%2C N-terminal domain~TIGRFAM: S-adenosylmethionine synthetase gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0856 Arch_0857 Arch_0857 Arch_0857 971578 973650 + primosome assembly protein PriA COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase~KEGG: tfu:Tfu_1073 primosome assembly protein PriA~SPTR: D0WMZ0 Primosomal protein~TIGRFAM: primosomal protein N'%3B glutamate--cysteine ligase/gamma-glutamylcysteine synthetase%2C Streptococcus agalactiae type gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0857 Arch_0858 Arch_0858 Arch_0858 973691 974617 + methionyl-tRNA formyltransferase COGs: COG0223 Methionyl-tRNA formyltransferase~InterPro IPR002376:IPR011034:IPR005793:IPR005794~KEGG: art:Arth_1671 methionyl-tRNA formyltransferase~PFAM: formyl transferase domain protein~SPTR: A0JVJ5 Methionyl-tRNA formyltransferase~TIGRFAM: methionyl-tRNA formyltransferase~PFAM: Formyl transferase%3B Formyl transferase%2C C-terminal domain~TIGRFAM: methionyl-tRNA formyltransferase gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0858 Arch_0859 Arch_0859 Arch_0859 974614 976068 + Fmu (Sun) domain protein COGs: COG0144 tRNA and rRNA cytosine-C5-methylase~InterPro IPR006027:IPR001678~KEGG: jde:Jden_1312 Fmu (Sun) domain protein~PFAM: Fmu (Sun) domain protein%3B NusB/RsmB/TIM44~SPTR: D0WMY6 Ribosomal RNA small subunit methyltransferase B~PFAM: NOL1/NOP2/sun family%3B NusB family~TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0859 Arch_0860 Arch_0860 Arch_0860 976081 976746 + ribulose-phosphate 3-epimerase COGs: COG0036 Pentose-5-phosphate-3-epimerase~InterPro IPR011060:IPR000056:IPR013785~KEGG: bcv:Bcav_2050 ribulose-phosphate 3-epimerase~PFAM: ribulose-phosphate 3-epimerase~PRIAM: Ribulose-phosphate 3-epimerase~SPTR: D0WMY5 Ribulose-phosphate 3-epimerase~TIGRFAM: ribulose-phosphate 3-epimerase~PFAM: Ribulose-phosphate 3 epimerase family~TIGRFAM: ribulose-phosphate 3-epimerase gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0860 Arch_0861 Arch_0861 Arch_0861 976963 977715 + binding-protein-dependent transport systems inner membrane component COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component~InterPro IPR000515~KEGG: bcv:Bcav_2051 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: D0WMX5 ABC transporter%2C permease protein~PFAM: Binding-protein-dependent transport system inner membrane component gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0861 Arch_0862 Arch_0862 Arch_0862 977727 978737 + NMT1/THI5 like domain protein COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components~InterPro IPR015168~KEGG: bcv:Bcav_2052 NMT1/THI5 like domain protein~PFAM: NMT1/THI5 like domain protein~SPTR: D0WMX4 Putative sulfonate/nitrate/taurine transport system substrate-binding protein~PFAM: NMT1/THI5 like gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0862 Arch_0863 Arch_0863 Arch_0863 978740 979843 - protein of unknown function DUF952 KEGG: bcv:Bcav_2056 protein of unknown function DUF952~SPTR: D0WMX1 Putative uncharacterized protein gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0863 Arch_0864 Arch_0864 Arch_0864 979874 980779 + transcriptional regulator protein COGs: COG2378 transcriptional regulator protein~KEGG: kse:Ksed_13990 predicted transcriptional regulator~SPTR: D0WMX0 Putative uncharacterized protein gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0864 Arch_0865 Arch_0865 Arch_0865 980766 981671 + hypothetical protein KEGG: tcu:Tcur_2317 transcriptional regulator-like protein~SPTR: D0WMW9 Putative uncharacterized protein gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0865 Arch_0866 Arch_0866 Arch_0866 981671 984271 + DEAD/DEAH box helicase domain protein COGs: COG4581 Superfamily II RNA helicase~InterProIPR014001:IPR001650:IPR014021:IPR011545:IPR 012961~KEGG: ace:Acel_1206 DSH domain-containing protein~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein%3B DSH domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: D0WMW7 ATP-dependent RNA helicase%2C DEAD/DEAH box family~PFAM: Helicase conserved C-terminal domain%3B DSHCT (NUC185) domain%3B DEAD/DEAH box helicase gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0866 Arch_0867 Arch_0867 Arch_0867 984469 986004 + apolipoprotein N-acyltransferase COGs: COG0815 Apolipoprotein N-acyltransferase~InterPro IPR003010:IPR004563~KEGG: bcv:Bcav_2064 apolipoprotein N-acyltransferase~PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~SPTR: D0WMW6 Putative polyprenol-phosphate-mannosyl transferase~TIGRFAM: apolipoprotein N-acyltransferase~PFAM: Carbon-nitrogen hydrolase~TIGRFAM: apolipoprotein N-acyltransferase gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0867 Arch_0868 Arch_0868 Arch_0868 986062 986415 - hypothetical protein KEGG: bln:Blon_1173 narrowly conserved hypothetical protein~SPTR: D0WMW4 Electron transport protein gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0868 Arch_0869 Arch_0869 Arch_0869 986597 987160 - transcriptional regulator%2C MerR family InterPro IPR009061:IPR000551~KEGG: bcv:Bcav_2099 transcriptional regulator%2C MerR family~SMART: regulatory protein MerR~SPTR: C5C6E6 Transcriptional regulator%2C MerR family gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0869 Arch_0870 Arch_0870 Arch_0870 987282 988034 - transcriptional regulator%2C MerR family InterPro IPR009061:IPR000551~KEGG: bcv:Bcav_2101 transcriptional regulator%2C MerR family~SMART: regulatory protein MerR~SPTR: D0WMW0 Regulatory protein%2C MerR family gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0870 Arch_0871 Arch_0871 Arch_0871 988031 988483 - FHA domain containing protein COGs: COG1716 FOG: FHA domain~InterPro IPR008984:IPR000253~KEGG: bcv:Bcav_2102 FHA domain containing protein~PFAM: Forkhead-associated protein~SMART: Forkhead-associated protein~SPTR: D0WMV9 GarA protein~PFAM: FHA domain gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0871 Arch_0872 Arch_0872 Arch_0872 988555 991086 - aminopeptidase N COGs: COG0308 Aminopeptidase N~InterPro IPR014782:IPR016059:IPR012778~KEGG: kse:Ksed_24070 aminopeptidase N~PFAM: Peptidase M1 membrane alanine aminopeptidase~SPTR: C7NFC1 Aminopeptidase N~TIGRFAM: aminopeptidase N~PFAM: Peptidase family M1%3B Domain of unknown function (DUF3358)~TIGRFAM: aminopeptidase N%2C Streptomyces lividans type gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0872 Arch_0873 Arch_0873 Arch_0873 991484 992998 - ribosome-associated GTPase EngA COGs: COG1160 GTPase~InterProIPR006073:IPR003593:IPR016484:IPR005225:IPR 002917~KEGG: bcv:Bcav_2148 small GTP-binding protein~PFAM: GTP-binding protein HSR1-related~SPTR: A7BCE2 GTP-binding protein engA~TIGRFAM: ribosome-associated GTPase EngA%3B small GTP-binding protein~PFAM: GTPase of unknown function~TIGRFAM: ribosome-associated GTPase EngA%3B small GTP-binding protein domain gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0873 Arch_0874 Arch_0874 Arch_0874 992995 993690 - cytidylate kinase COGs: COG0283 Cytidylate kinase~InterPro IPR003136:IPR000623:IPR011994~KEGG: jde:Jden_1271 cytidylate kinase~PFAM: cytidylate kinase region%3B shikimate kinase~SPTR: D0WMU4 Prephenate dehydrogenase~TIGRFAM: cytidylate kinase~PFAM: Cytidylate kinase~TIGRFAM: cytidylate kinase gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0874 Arch_0875 Arch_0875 Arch_0875 993690 994445 - pseudouridine synthase COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase~InterProIPR020103:IPR018496:IPR002942:IPR000748:IPR 006145~KEGG: bcv:Bcav_2153 pseudouridine synthase~PFAM: pseudouridine synthase%3B RNA-binding S4 domain protein~SMART: RNA-binding S4 domain protein~SPTR: D0WMU3 Ribosomal large subunit pseudouridine synthase B~PFAM: RNA pseudouridylate synthase%3B S4 domain~TIGRFAM: pseudouridine synthase family gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0875 Arch_0876 Arch_0876 Arch_0876 994442 995005 - chromosome segregation and condensation protein%2C ScpB COGs: COG1386 transcriptional regulator protein containing the HTH domain~InterPro IPR005234:IPR011991~KEGG: kra:Krad_3121 putative transcriptional regulator~PFAM: chromosome segregation and condensation protein ScpB~SPTR: D0WMU2 Segregation and condensation protein B~TIGRFAM: segregation and condensation protein B~PFAM: Putative transcriptional regulators (Ypuh-like)~TIGRFAM: segregation and condensation protein B gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0876 Arch_0877 Arch_0877 Arch_0877 994998 995813 - chromosome segregation and condensation protein ScpA COGs: COG1354 conserved hypothetical protein~InterPro IPR003768~KEGG: tfu:Tfu_1204 condensin subunit ScpA~PFAM: chromosome segregation and condensation protein ScpA~SPTR: D0WMU1 ScpA/B protein~PFAM: ScpA/B protein gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0877 Arch_0878 Arch_0878 Arch_0878 995824 996675 - Cobyrinic acid ac-diamide synthase COGs: COG1192 ATPase involved in chromosome partitioning~InterPro IPR002586~KEGG: bcv:Bcav_2156 cobyrinic acid ac-diamide synthase~PFAM: Cobyrinic acid ac-diamide synthase~SPTR: C0W1H6 Chromosome partitioning protein transcriptional regulator~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0878 Arch_0879 Arch_0879 Arch_0879 996696 997628 - tyrosine recombinase XerD COGs: COG4974 Site-specific recombinase XerD~InterProIPR011010:IPR010998:IPR013762:IPR011932:IPR 004107:IPR002104~KEGG: art:Arth_1521 tyrosine recombinase XerD~PFAM: integrase family protein%3B integrase domain protein SAM domain protein~SPTR: C0W3E4 Tyrosine recombinase~TIGRFAM: tyrosine recombinase XerD~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family~TIGRFAM: tyrosine recombinase XerD gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0879 Arch_0880 Arch_0880 Arch_0880 997719 999821 + transketolase COGs: COG0021 Transketolase~InterProIPR009014:IPR005474:IPR015941:IPR005478:IPR 005475:IPR005476~KEGG: jde:Jden_1264 transketolase~PFAM: Transketolase domain protein%3B Transketolase central region~SPTR: D0WMT7 Transketolase~TIGRFAM: transketolase~PFAM: Transketolase%2C thiamine diphosphate binding domain%3B Transketolase%2C C-terminal domain%3B Transketolase%2C pyrimidine binding domain~TIGRFAM: transketolase%2C bacterial and yeast gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0880 Arch_0881 Arch_0881 Arch_0881 999997 1000242 - preprotein translocase%2C SecG subunit InterPro IPR004692~KEGG: cmi:CMM_1741 preprotein translocase subunit SecG~PFAM: Preprotein translocase SecG subunit~SPTR: A5CRT4 Putative uncharacterized protein secG~TIGRFAM: preprotein translocase%2C SecG subunit~PFAM: Preprotein translocase SecG subunit~TIGRFAM: protein translocase%2C SecG subunit gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0881 Arch_0882 Arch_0882 Arch_0882 1000366 1001145 - triosephosphate isomerase COGs: COG0149 Triosephosphate isomerase~InterPro IPR000652:IPR020861:IPR013785~KEGG: pac:PPA0818 triosephosphate isomerase~PFAM: triosephosphate isomerase~PRIAM: Triose-phosphate isomerase~SPTR: D0WMT3 Triose-phosphate isomerase~TIGRFAM: triosephosphate isomerase~PFAM: Triosephosphate isomerase~TIGRFAM: triosephosphate isomerase gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0882 Arch_0883 Arch_0883 Arch_0883 1001151 1002344 - Phosphoglycerate kinase COGs: COG0126 3-phosphoglycerate kinase~InterPro IPR001576:IPR015911:IPR015824:IPR015901~KEGG: jde:Jden_1257 phosphoglycerate kinase~PFAM: phosphoglycerate kinase~PRIAM: Phosphoglycerate kinase~SPTR: D0WMT2 Phosphoglycerate kinase~PFAM: Phosphoglycerate kinase gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0883 Arch_0884 Arch_0884 Arch_0884 1002465 1003472 - glyceraldehyde-3-phosphate dehydrogenase%2C type I COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase~InterProIPR020832:IPR016040:IPR020830:IPR020831:IPR 006424:IPR020828:IPR020829~KEGG: cdi:DIP1310 glyceraldehyde-3-phosphate dehydrogenase~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain~PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)~SPTR: Q6NH35 Glyceraldehyde 3-phosphate dehydrogenase~TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase%2C type I~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C C-terminal domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C NAD binding domain~TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase%2C type I gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0884 Arch_0885 Arch_0885 Arch_0885 1003690 1004682 - protein of unknown function DUF199 COGs: COG1481 conserved hypothetical protein~InterPro IPR018478:IPR003802~KEGG: bcv:Bcav_2172 protein of unknown function DUF199~PFAM: protein of unknown function DUF199%3B Sporulation regulator WhiA-like~SPTR: D0WMS9 Putative transcriptional regulatory protein whia~PFAM: Sporulation Regulator WhiA N terminal%3B Sporulation Regulator WhiA C terminal domain~TIGRFAM: conserved hypothetical protein gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0885 Arch_0886 Arch_0886 Arch_0886 1004744 1005715 - protein of unknown function UPF0052 and CofD COGs: COG0391 conserved hypothetical protein~InterPro IPR010119:IPR002882~KEGG: xce:Xcel_1546 protein of unknown function UPF0052 and CofD~PFAM: protein of unknown function UPF0052 and CofD~SPTR: D1BHK9 Putative uncharacterized protein~PFAM: Uncharacterised protein family UPF0052~TIGRFAM: conserved hypothetical protein%2C cofD-related gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0886 Arch_0887 Arch_0887 Arch_0887 1005712 1006647 - conserved hypothetical protein COGs: COG1660 P-loop-containing kinase~InterPro IPR005337~KEGG: bcv:Bcav_2174 hypothetical protein~PFAM: conserved hypothetical protein~SPTR: D0WMS7 ATP-binding protein~PFAM: P-loop ATPase protein family gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0887 Arch_0888 Arch_0888 Arch_0888 1006667 1008636 - pseudogene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0888 Arch_0889 Arch_0889 Arch_0889 1008639 1011563 - excinuclease ABC%2C A subunit COGs: COG0178 Excinuclease ATPase subunit~InterPro IPR017871:IPR003439:IPR004602~KEGG: bcv:Bcav_2178 excinuclease ABC%2C A subunit~PFAM: ABC transporter related~SPTR: D0WMS5 Excinuclease ABC subunit A~TIGRFAM: excinuclease ABC%2C A subunit~PFAM: ABC transporter~TIGRFAM: excinuclease ABC%2C A subunit gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0889 Arch_0890 Arch_0890 Arch_0890 1011581 1011859 + YCII-related protein InterPro IPR011008:IPR005545~KEGG: bcv:Bcav_2180 YCII-related protein~PFAM: YCII-related~SPTR: D0WMS4 Putative YCII-related domain protein~PFAM: YCII-related domain gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0890 Arch_0891 Arch_0891 Arch_0891 1012090 1013076 - Integral membrane protein TerC COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance~InterPro IPR005496~KEGG: jde:Jden_1249 integral membrane protein TerC~PFAM: Integral membrane protein TerC~SPTR: D0WMS2 Protein Alx~manually curated~PFAM: Integral membrane protein TerC family gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0891 Arch_0892 Arch_0892 Arch_0892 1013282 1015330 - excinuclease ABC%2C B subunit COGs: COG0556 Helicase subunit of the DNA excision repair complex~InterProIPR009055:IPR014001:IPR001650:IPR001943:IPR 014021:IPR004807:IPR006935~KEGG: xce:Xcel_1529 excinuclease ABC%2C B subunit~PFAM: helicase domain protein%3B type III restriction protein res subunit%3B UvrB/UvrC protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: D0WMS1 Excinuclease ABC subunit B~TIGRFAM: excinuclease ABC%2C B subunit~PFAM: Helicase conserved C-terminal domain%3B UvrB/uvrC motif%3B Type III restriction enzyme%2C res subunit%3B Ultra-violet resistance protein B~TIGRFAM: excinuclease ABC%2C B subunit gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0892 Arch_0893 Arch_0893 Arch_0893 1015396 1016241 - dephospho-CoA kinase COGs: COG0237 Dephospho-CoA kinase~InterPro IPR001977~KEGG: bcv:Bcav_2187 dephospho-CoA kinase~PRIAM: Dephospho-CoA kinase~SPTR: C5BV52 Dephospho-CoA kinase~TIGRFAM: dephospho-CoA kinase~PFAM: Dephospho-CoA kinase~TIGRFAM: dephospho-CoA kinase gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0893 Arch_0894 Arch_0894 Arch_0894 1016448 1017917 - RNA binding S1 domain protein COGs: COG0539 Ribosomal protein S1~InterPro IPR000110:IPR016027:IPR003029:IPR012340~KEGG: jde:Jden_1229 RNA binding S1 domain protein~PFAM: RNA binding S1 domain protein~SPTR: D0WMQ6 Ribosomal protein S1~PFAM: S1 RNA binding domain~TIGRFAM: ribosomal protein S1 gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0894 Arch_0895 Arch_0895 Arch_0895 1018086 1018874 + Methyltransferase type 11 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis~InterPro IPR013216~KEGG: xce:Xcel_1513 methyltransferase type 11~PFAM: Methyltransferase type 11~SPTR: D0WMQ5 SAM-dependent methyltransferase~PFAM: Methyltransferase domain gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0895 Arch_0896 Arch_0896 Arch_0896 1018880 1021576 - DNA polymerase I COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains~InterProIPR002298:IPR020045:IPR012337:IPR002421:IPR 008918:IPR001098:IPR018320:IPR020046:IPR020047~KEGG: bcv:Bcav_2200 DNA polymerase I~PFAM: DNA-directed DNA polymerase%3B 5'-3' exonuclease%2C N-terminal resolvase-like domain%3B 5'-3' exonuclease%2C SAM-fold domain~PRIAM: DNA-directed DNA polymerase~SMART: 5'-3' exonuclease%3B Helix-hairpin-helix domain protein class 2%3B DNA-directed DNA polymerase~SPTR: D0WMQ4 DNA polymerase I~TIGRFAM: DNA polymerase I~PFAM: 5'-3' exonuclease%2C C-terminal SAM fold%3B DNA polymerase family A%3B 5'-3' exonuclease%2C N-terminal resolvase-like domain~TIGRFAM: DNA polymerase I gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0896 Arch_0897 Arch_0897 Arch_0897 1021611 1022012 + thioesterase superfamily protein InterPro IPR003736:IPR006683~KEGG: svi:Svir_25970 hypothetical protein~PFAM: thioesterase superfamily protein~SPTR: D0WMQ3 Thioesterase family protein~PFAM: Thioesterase superfamily~TIGRFAM: uncharacterized domain 1 gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0897 Arch_0898 Arch_0898 Arch_0898 1021990 1022619 - response regulator receiver and ANTAR domain protein COGs: COG3707 Response regulator with putative antiterminator output domain~InterProIPR011006:IPR001789:IPR008327:IPR005561:IPR 011991~KEGG: bfa:Bfae_14950 response regulator with putative antiterminator output domain~PFAM: response regulator receiver%3B ANTAR domain protein~SMART: response regulator receiver~SPTR: D0WMQ2 Two-component system response regulator~PFAM: Response regulator receiver domain%3B ANTAR domain gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0898 Arch_0899 Arch_0899 Arch_0899 1022866 1024284 - pyruvate kinase COGs: COG0469 Pyruvate kinase~InterProIPR015793:IPR015813:IPR015795:IPR011037:IPR 018209:IPR015794:IPR001697~KEGG: bcv:Bcav_2215 pyruvate kinase~PFAM: Pyruvate kinase barrel%3B Pyruvate kinase alpha/beta~PRIAM: Pyruvate kinase~SPTR: D0WMQ1 Pyruvate kinase~TIGRFAM: pyruvate kinase~PFAM: Pyruvate kinase%2C barrel domain%3B Pyruvate kinase%2C alpha/beta domain~TIGRFAM: pyruvate kinase gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0899 Arch_0900 Arch_0900 Arch_0900 1024295 1025158 - prolipoprotein diacylglyceryl transferase COGs: COG0682 Prolipoprotein diacylglyceryltransferase~InterPro IPR001640~KEGG: jde:Jden_1218 prolipoprotein diacylglyceryl transferase~PFAM: prolipoprotein diacylglyceryl transferase~SPTR: D0WMQ0 Prolipoprotein diacylglyceryl transferase~TIGRFAM: prolipoprotein diacylglyceryl transferase~PFAM: Prolipoprotein diacylglyceryl transferase~TIGRFAM: prolipoprotein diacylglyceryl transferase gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0900 Arch_0901 Arch_0901 Arch_0901 1025186 1026055 - peptidylprolyl isomerase FKBP-type InterPro IPR001179~KEGG: bcv:Bcav_2236 peptidylprolyl isomerase FKBP-type~PFAM: peptidylprolyl isomerase FKBP-type~SPTR: D0WMP5 Putative peptidyl-prolyl cis-trans isomerase%2C FKBP-type~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0901 Arch_0902 Arch_0902 Arch_0902 1026056 1027438 - protein of unknown function DUF245 domain protein InterPro IPR004989:IPR004347~KEGG: xce:Xcel_1490 protein of unknown function DUF245 domain protein~PFAM: protein of unknown function DUF245 domain protein%3B protein of unknown function DUF275 domain protein~SPTR: D0WMP4 Proteasome accessory factor PafA~PFAM: Pup-ligase protein gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0902 Arch_0903 Arch_0903 Arch_0903 1027435 1027614 - protein of unknown function DUF797 InterPro IPR008515~KEGG: jde:Jden_1203 protein of unknown function DUF797~PFAM: protein of unknown function DUF797~SPTR: C1RK95 Putative uncharacterized protein~PFAM: Pup-like protein gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0903 Arch_0904 Arch_0904 Arch_0904 1027625 1029085 - protein of unknown function DUF245 domain protein InterPro IPR004989:IPR004347~KEGG: bcv:Bcav_2240 protein of unknown function DUF245 domain protein~PFAM: protein of unknown function DUF245 domain protein%3B protein of unknown function DUF275 domain protein~SPTR: D0WMP2 Proteasome accessory factor PafA2~PFAM: Pup-ligase protein gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0904 Arch_0905 Arch_0905 Arch_0905 1029107 1030627 - AAA ATPase central domain protein COGs: COG1222 ATP-dependent 26S proteasome regulatory subunit~InterPro IPR003960:IPR003593:IPR003959~KEGG: xce:Xcel_1485 AAA ATPase central domain protein~PFAM: AAA ATPase central domain protein~SMART: AAA ATPase~SPTR: C1RM61 ATP-dependent 26S proteasome regulatory subunit~PFAM: ATPase family associated with various cellular activities (AAA) gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0905 Arch_0906 Arch_0906 Arch_0906 1030638 1031735 - tRNA (adenine-N(1)-)-methyltransferase COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase~InterPro IPR014816~KEGG: bcv:Bcav_2243 tRNA methyltransferase complex GCD14 subunit~PFAM: tRNA methyltransferase complex GCD14 subunit~PRIAM: tRNA (adenine-N(1)-)-methyltransferase~SPTR: D0WMP0 SAM-dependent methyltransferase~PFAM: tRNA methyltransferase complex GCD14 subunit gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0906 Arch_0907 Arch_0907 Arch_0907 1031871 1032722 + conserved hypothetical protein COGs: COG2887 RecB family exonuclease~KEGG: sco:SCO1653 hypothetical protein~SPTR: D0WMN9 RecB family exonuclease~PFAM: Protein of unknown function (DUF2800) gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0907 Arch_0908 Arch_0908 Arch_0908 1032679 1033344 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 COGs: COG0637 phosphatase/phosphohexomutase~InterPro IPR006402:IPR005834~KEGG: kse:Ksed_13910 haloacid dehalogenase superfamily protein%2C subfamily IA%2C variant 3 with third motif having dd or ED~PFAM: Haloacid dehalogenase domain protein hydrolase~SPTR: C7NHR1 Haloacid dehalogenase superfamily protein%2C subfamily IA%2C variant 3 with third motif having DD or ED~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0908 Arch_0909 Arch_0909 Arch_0909 1033356 1034198 - undecaprenol kinase COGs: COG1968 Uncharacterized bacitracin resistance protein~InterPro IPR003824~KEGG: mlu:Mlut_11800 undecaprenyl-diphosphatase~PFAM: Bacitracin resistance protein BacA~SPTR: D0WMN7 Undecaprenyl-diphosphatase UppP~TIGRFAM: undecaprenol kinase~PFAM: Bacitracin resistance protein BacA~TIGRFAM: undecaprenyl-diphosphatase UppP gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0909 Arch_0910 Arch_0910 Arch_0910 1034245 1035186 + aldo/keto reductase COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase)~InterPro IPR001395~KEGG: xce:Xcel_1477 aldo/keto reductase~PFAM: aldo/keto reductase~SPTR: D1BS15 Aldo/keto reductase~PFAM: Aldo/keto reductase family gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0910 Arch_0911 Arch_0911 Arch_0911 1035349 1036194 + Domain of unknown function DUF1994 InterPro IPR018532~KEGG: bde:BDP_1345 conserved hypothetical secreted protein~PFAM: Domain of unknown function DUF1994~SPTR: C0W3G0 Possible secreted protein~PFAM: Uncharacterized conserved protein (DUF2081)%3B Domain of unknown function (DUF1994) gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0911 Arch_0912 Arch_0912 Arch_0912 1036250 1036552 - conserved hypothetical protein KEGG: bcv:Bcav_2251 hypothetical protein~SPTR: D0WMN5 Putative uncharacterized protein gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0912 Arch_0913 Arch_0913 Arch_0913 1036590 1037456 - shikimate 5-dehydrogenase COGs: COG0169 Shikimate 5-dehydrogenase~InterPro IPR016040:IPR011342:IPR013708:IPR006151~KEGG: shi:Shel_06560 shikimate 5-dehydrogenase~PFAM: Shikimate dehydrogenase substrate binding domain protein%3B Shikimate/quinate 5-dehydrogenase~SPTR: D0WNH9 Shikimate dehydrogenase~TIGRFAM: shikimate 5-dehydrogenase~PFAM: Shikimate dehydrogenase substrate binding domain%3B Shikimate / quinate 5-dehydrogenase~TIGRFAM: shikimate 5-dehydrogenase gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0913 Arch_0914 Arch_0914 Arch_0914 1037501 1037782 - conserved hypothetical protein InterPro IPR013823~KEGG: ckr:CKR_2548 hypothetical protein~SPTR: C1IBK7 Putative uncharacterized protein~PFAM: Ribosomal protein L7/L12 C-terminal domain gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0914 Arch_0915 Arch_0915 Arch_0915 1037955 1038604 - pseudogene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0915 Arch_0916 Arch_0916 Arch_0916 1038608 1038862 - pseudogene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0916 Arch_0917 Arch_0917 Arch_0917 1039328 1039795 + Protein of unknown function DUF2166 InterPro IPR019229~KEGG: nml:Namu_3760 MazG nucleotide pyrophosphohydrolase~PFAM: Protein of unknown function DUF2166~SPTR: D0WMM4 Acetyltransferase family protein~PFAM: Phosphoribosyl-ATP pyrophosphohydrolase gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0917 Arch_0918 Arch_0918 Arch_0918 1039862 1040371 - hypothetical protein KEGG: cbf:CLI_2525 hypothetical protein~SPTR: C3L0G7 Putative membrane protein gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0918 Arch_0919 Arch_0919 Arch_0919 1040364 1040828 - hypothetical protein KEGG: bfa:Bfae_27750 hypothetical protein~SPTR: D0WMM3 Putative uncharacterized protein gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0919 Arch_0920 Arch_0920 Arch_0920 1040888 1041181 - pseudogene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0920 Arch_0921 Arch_0921 Arch_0921 1041354 1041830 + tRNA/rRNA methyltransferase (SpoU) COGs: COG0219 rRNA methylase (SpoU class)~InterPro IPR016914:IPR001537~KEGG: krh:KRH_08750 putative RNA methyltransferase~PFAM: tRNA/rRNA methyltransferase (SpoU)~SPTR: B2GL46 Putative RNA methyltransferase~PFAM: SpoU rRNA Methylase family~TIGRFAM: rRNA methylase%2C putative%2C group 2 gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0921 Arch_0922 Arch_0922 Arch_0922 1041900 1042208 + transcriptional regulator%2C XRE family InterPro IPR010982:IPR001387~KEGG: xce:Xcel_0778 transcriptional regulator%2C XRE family~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein~SPTR: D0WML6 DNA-binding protein~PFAM: Helix-turn-helix gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0922 Arch_0923 Arch_0923 Arch_0923 1042205 1043050 - tRNA/rRNA methyltransferase (SpoU) COGs: COG0566 rRNA methylase~InterPro IPR001537~KEGG: krh:KRH_12470 RNA methyltransferase~PFAM: tRNA/rRNA methyltransferase (SpoU)~SPTR: C0W340 rRNA methyltransferase~PFAM: SpoU rRNA Methylase family gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0923 Arch_0924 Arch_0924 Arch_0924 1043116 1044174 - band 7 protein COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs~InterPro IPR001972:IPR018080:IPR001107~KEGG: bcv:Bcav_2313 band 7 protein~PFAM: band 7 protein~SMART: band 7 protein~SPTR: D0WML4 Band 7 protein~PFAM: SPFH domain / Band 7 family gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0924 Arch_0925 Arch_0925 Arch_0925 1044200 1044619 - protein of unknown function DUF107 COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity~InterPro IPR002810~KEGG: jde:Jden_1178 protein of unknown function DUF107~PFAM: protein of unknown function DUF107~SPTR: D0WML2 Putative integral membrane protein~PFAM: NfeD-like gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0925 Arch_0926 Arch_0926 Arch_0926 1044685 1045470 - ABC transporter related protein COGs: COG1119 ABC-type molybdenum transport system ATPase component/photorepair protein PhrA~InterPro IPR017871:IPR003593:IPR003439~KEGG: jde:Jden_1177 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0WML1 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0926 Arch_0927 Arch_0927 Arch_0927 1045509 1046732 - glycogen synthase COGs: COG0438 Glycosyltransferase~InterPro IPR019793:IPR011875:IPR001296~KEGG: bcv:Bcav_2317 glycogen synthase~PFAM: glycosyl transferase group 1~SPTR: D0WML0 Glycogen synthase~TIGRFAM: glycogen synthase~PFAM: Glycosyl transferases group 1~TIGRFAM: glycogen synthase%2C Corynebacterium family gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0927 Arch_0928 Arch_0928 Arch_0928 1046924 1048183 + glucose-1-phosphate adenylyltransferase COGs: COG0448 ADP-glucose pyrophosphorylase~InterPro IPR011004:IPR005836:IPR011831:IPR005835~KEGG: bcv:Bcav_2318 glucose-1-phosphate adenylyltransferase~PFAM: Nucleotidyl transferase~PRIAM: Glucose-1-phosphate adenylyltransferase~SPTR: D0WMK9 Glucose-1-phosphate adenylyltransferase~TIGRFAM: glucose-1-phosphate adenylyltransferase~manually curated~PFAM: Nucleotidyl transferase~TIGRFAM: glucose-1-phosphate adenylyltransferase gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0928 Arch_0929 Arch_0929 Arch_0929 1048268 1049881 - ABC transporter related protein COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR017871:IPR003593:IPR003439~KEGG: bcv:Bcav_2326 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0WMK2 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0929 Arch_0930 Arch_0930 Arch_0930 1049991 1050884 + protein of unknown function zinc metallopeptidase putative COGs: COG2321 metalloprotease~InterPro IPR007343~KEGG: bcv:Bcav_2331 protein of unknown function zinc metallopeptidase putative~PFAM: protein of unknown function zinc metallopeptidase putative~SPTR: D0WMK1 Metallopeptidase%2C zinc binding~PFAM: Putative neutral zinc metallopeptidase gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0930 Arch_0931 Arch_0931 Arch_0931 1050958 1051275 - protein of unknown function DUF59 COGs: COG2151 metal-sulfur cluster biosynthetic protein~InterPro IPR002744~KEGG: ace:Acel_1140 hypothetical protein~PFAM: protein of unknown function DUF59~SPTR: A3TLB3 Putative uncharacterized protein~PFAM: Domain of unknown function DUF59 gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0931 Arch_0932 Arch_0932 Arch_0932 1051302 1051760 - SUF system FeS assembly protein%2C NifU family COGs: COG0822 NifU homolog involved in Fe-S cluster formation~InterPro IPR011341:IPR002871~KEGG: blt:Balat_0915 hypothetical protein~PFAM: nitrogen-fixing NifU domain protein~SPTR: D0WMJ9 SUF system FeS assembly protein%2C NifU family~TIGRFAM: SUF system FeS assembly protein%2C NifU family~PFAM: NifU-like N terminal domain~TIGRFAM: SUF system FeS assembly protein%2C NifU family gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0932 Arch_0933 Arch_0933 Arch_0933 1051763 1053028 - cysteine desulfurase%2C SufS subfamily COGs: COG0520 Selenocysteine lyase~InterPro IPR015424:IPR015421:IPR010970:IPR000192~KEGG: xce:Xcel_1361 cysteine desulfurase%2C SufS subfamily~PFAM: aminotransferase class V~SPTR: D0WMJ8 Cysteine desulfurase SufS~TIGRFAM: cysteine desulfurase%2C SufS subfamily~PFAM: Aminotransferase class-V~TIGRFAM: cysteine desulfurases%2C SufS subfamily gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0933 Arch_0934 Arch_0934 Arch_0934 1053033 1053782 - FeS assembly ATPase SufC COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component~InterPro IPR003593:IPR003439:IPR010230~KEGG: jde:Jden_1143 FeS assembly ATPase SufC~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C0VZ94 ABC superfamily ATP binding cassette transporter%2C ABC protein~TIGRFAM: FeS assembly ATPase SufC~PFAM: ABC transporter~TIGRFAM: FeS assembly ATPase SufC gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0934 Arch_0935 Arch_0935 Arch_0935 1053822 1054145 - Rieske (2Fe-2S) iron-sulfur domain protein COGs: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase~InterPro IPR017941~KEGG: bcv:Bcav_2338 Rieske (2Fe-2S) domain protein~PFAM: Rieske [2Fe-2S] iron-sulphur domain~SPTR: C1RHU4 Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase~PFAM: Rieske [2Fe-2S] domain gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0935 Arch_0936 Arch_0936 Arch_0936 1054138 1055268 - FeS assembly protein SufD COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component~InterPro IPR011542:IPR000825~KEGG: bcv:Bcav_2339 FeS assembly protein SufD~PFAM: SufBD protein~SPTR: A7BC52 Putative uncharacterized protein~TIGRFAM: FeS assembly protein SufD~PFAM: Uncharacterized protein family (UPF0051)~TIGRFAM: FeS assembly protein SufD%2C group 1 gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0936 Arch_0937 Arch_0937 Arch_0937 1055268 1056710 - FeS assembly protein SufB COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component~InterPro IPR010231:IPR000825~KEGG: bcv:Bcav_2340 FeS assembly protein SufB~PFAM: SufBD protein~SPTR: C5BVZ0 FeS assembly protein SufB~TIGRFAM: FeS assembly protein SufB~PFAM: Uncharacterized protein family (UPF0051)~TIGRFAM: FeS assembly protein SufB gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0937 Arch_0938 Arch_0938 Arch_0938 1056707 1057438 - putative transcriptional regulator COGs: COG2345 transcriptional regulator protein~InterPro IPR001845~KEGG: jde:Jden_1139 putative transcriptional regulator~PFAM: regulatory protein ArsR~SPTR: D0WMJ3 Putative DNA-binding transcriptional regulator~PFAM: Bacterial regulatory protein%2C arsR family gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0938 Arch_0939 Arch_0939 Arch_0939 1057568 1058185 - NUDIX hydrolase InterPro IPR015797:IPR000086~KEGG: xce:Xcel_1348 NUDIX hydrolase~PFAM: NUDIX hydrolase~SPTR: D0WMJ2 MutT/NUDIX family protein~PFAM: NUDIX domain gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0939 Arch_0940 Arch_0940 Arch_0940 1058182 1059741 - virulence factor MVIN family protein COGs: COG0728 membrane protein putative virulence factor~InterPro IPR004268:IPR017441~KEGG: bcv:Bcav_2351 virulence factor MviN family protein~PFAM: virulence factor MVIN family protein~SPTR: D0WMJ1 Putative integral membrane protein MviN~PFAM: MviN-like protein~TIGRFAM: integral membrane protein MviN gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0940 Arch_0941 Arch_0941 Arch_0941 1059751 1060566 - conserved hypothetical protein KEGG: xce:Xcel_1345 hypothetical protein~SPTR: D0WMJ0 Putative uncharacterized protein gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0941 Arch_0942 Arch_0942 Arch_0942 1060563 1061579 - conserved hypothetical protein KEGG: kra:Krad_3145 hypothetical protein~SPTR: D0WMI9 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3186) gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0942 Arch_0943 Arch_0943 Arch_0943 1061572 1062783 - Thiamin pyrophosphokinase catalytic region COGs: COG4825 Uncharacterized membrane-anchored protein~InterPro IPR007371~KEGG: bcv:Bcav_2354 thiamin pyrophosphokinase catalytic region~PFAM: Thiamin pyrophosphokinase catalytic region~SPTR: D0WMI8 Thiamin pyrophosphokinase%2C catalytic domain protein~PFAM: Thiamine pyrophosphokinase C terminal%3B Thiamin pyrophosphokinase%2C catalytic domain~TIGRFAM: thiamine pyrophosphokinase gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0943 Arch_0944 Arch_0944 Arch_0944 1062773 1064467 - DNA repair protein RecN COGs: COG0497 ATPase involved in DNA repair~InterPro IPR004604:IPR003395~KEGG: rmu:RMDY18_14060 ATPase involved in DNA repair~PFAM: SMC domain protein~SPTR: D0WMI7 DNA repair protein RecN~TIGRFAM: DNA repair protein RecN~PFAM: RecF/RecN/SMC N terminal domain~TIGRFAM: DNA repair protein RecN gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0944 Arch_0945 Arch_0945 Arch_0945 1064464 1065345 - ATP-NAD/AcoX kinase COGs: COG0061 sugar kinase~InterPro IPR016064:IPR017437:IPR002504~KEGG: bcv:Bcav_2356 ATP-NAD/AcoX kinase~PFAM: ATP-NAD/AcoX kinase~SPTR: D0WMI6 ATP-NAD kinase~PFAM: ATP-NAD kinase gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0945 Arch_0946 Arch_0946 Arch_0946 1065390 1066214 - hemolysin A COGs: COG1189 rRNA methylase~InterPro IPR002942:IPR004538:IPR002877~KEGG: kra:Krad_3149 hemolysin A~PFAM: RNA-binding S4 domain protein%3B ribosomal RNA methyltransferase RrmJ/FtsJ~SMART: RNA-binding S4 domain protein~SPTR: A7BC42 Putative uncharacterized protein~TIGRFAM: hemolysin A~PFAM: S4 domain%3B FtsJ-like methyltransferase~TIGRFAM: hemolysin TlyA family protein gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0946 Arch_0947 Arch_0947 Arch_0947 1066235 1066423 - hypothetical protein gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0947 Arch_0948 Arch_0948 Arch_0948 1066420 1067433 - HAD-superfamily hydrolase%2C subfamily IIA COGs: COG0647 sugar phosphatase of the HAD superfamily~InterPro IPR006357:IPR005834~KEGG: xce:Xcel_1338 HAD-superfamily hydrolase%2C subfamily IIA~PFAM: Haloacid dehalogenase domain protein hydrolase~SPTR: C1RHW4 Predicted sugar phosphatase of HAD superfamily (Fragment)~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IIA~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: Haloacid Dehalogenase Superfamily Class (subfamily) IIA gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0948 Arch_0949 Arch_0949 Arch_0949 1067426 1069030 - conserved hypothetical protein KEGG: jde:Jden_1121 hypothetical protein~SPTR: C7R3S0 Putative uncharacterized protein gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0949 Arch_0950 Arch_0950 Arch_0950 1075313 1076572 - tyrosyl-tRNA synthetase COGs: COG0162 Tyrosyl-tRNA synthetase~InterPro IPR002307:IPR002942:IPR014729:IPR002305~KEGG: xce:Xcel_1336 tyrosyl-tRNA synthetase~PFAM: aminoacyl-tRNA synthetase class Ib%3B RNA-binding S4 domain protein~PRIAM: Tyrosine--tRNA ligase~SPTR: C0W7M8 Tyrosine--tRNA ligase~TIGRFAM: tyrosyl-tRNA synthetase~PFAM: tRNA synthetases class I (W and Y)~TIGRFAM: tyrosyl-tRNA synthetase gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0950 Arch_0951 Arch_0951 Arch_0951 1076763 1078169 + conserved hypothetical protein COGs: COG3949 Uncharacterized membrane protein~KEGG: cdi:DIP0870 hypothetical protein~SPTR: Q8NRF4 Hypothetical membrane protein gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0951 Arch_0952 Arch_0952 Arch_0952 1078223 1078963 - nitroreductase COGs: COG0778 Nitroreductase~InterPro IPR000415:IPR016446~KEGG: cdi:DIP0265 putative nitroreductase~PFAM: nitroreductase~SPTR: Q6NJX6 Putative nitroreductase~PFAM: Nitroreductase family gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0952 Arch_0953 Arch_0953 Arch_0953 1078960 1079469 - arginine repressor%2C ArgR COGs: COG1438 Arginine repressor~InterPro IPR001669:IPR011991~KEGG: kse:Ksed_10120 transcriptional regulator%2C ArgR family~PFAM: arginine repressor~SPTR: D0WQD6 Arginine repressor~TIGRFAM: arginine repressor~PFAM: Arginine repressor%2C C-terminal domain%3B Arginine repressor%2C DNA binding domain~TIGRFAM: arginine repressor gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0953 Arch_0954 Arch_0954 Arch_0954 1079466 1080611 - aminotransferase class-III COGs: COG4992 Ornithine/acetylornithine aminotransferase~InterPro IPR015424:IPR015421:IPR005814~KEGG: tcu:Tcur_2154 acetylornithine and succinylornithine aminotransferase~PFAM: aminotransferase class-III~SPTR: D1A1N2 Acetylornithine and succinylornithine aminotransferase~PFAM: Aminotransferase class-III gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0954 Arch_0955 Arch_0955 Arch_0955 1080702 1081487 - short-chain dehydrogenase/reductase SDR COGs: COG0300 Short-chain dehydrogenase of various substrate specificities~InterPro IPR016040:IPR002198:IPR002347~KEGG: bcv:Bcav_2376 short-chain dehydrogenase/reductase SDR~PFAM: short-chain dehydrogenase/reductase SDR~SPTR: D0WN30 L-xylulose reductase~PFAM: short chain dehydrogenase gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0955 Arch_0956 Arch_0956 Arch_0956 1081561 1084140 - phenylalanyl-tRNA synthetase%2C beta subunit COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit~InterProIPR020825:IPR005121:IPR016027:IPR009061:IPR 004532:IPR002547:IPR012340:IPR005147:IPR005146~KEGG: jde:Jden_1109 phenylalanyl-tRNA synthetase%2C beta subunit~PFAM: B3/4 domain protein%3B t-RNA-binding domain protein%3B tRNA synthetase B5%3B ferredoxin-fold anticodon-binding~SPTR: D0WN31 Phenylalanyl-tRNA synthetase%2C beta subunit~TIGRFAM: phenylalanyl-tRNA synthetase%2C beta subunit~PFAM: tRNA synthetase B5 domain%3B B3/4 domain%3B Ferredoxin-fold anticodon binding domain%3B Putative tRNA binding domain~TIGRFAM: phenylalanyl-tRNA synthetase%2C beta subunit%2C non-spirochete bacterial gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0956 Arch_0957 Arch_0957 Arch_0957 1084140 1085222 - phenylalanyl-tRNA synthetase%2C alpha subunit COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit~InterProIPR010978:IPR004529:IPR006195:IPR004188:IPR 002319~KEGG: jde:Jden_1108 phenylalanyl-tRNA synthetase%2C alpha subunit~PFAM: phenylalanyl-tRNA synthetase class IIc%3B aminoacyl tRNA synthetase class II domain protein~SPTR: D0WN32 Phenylalanyl-tRNA synthetase%2C alpha subunit~TIGRFAM: phenylalanyl-tRNA synthetase%2C alpha subunit~PFAM: tRNA synthetases class II core domain (F)%3B Aminoacyl tRNA synthetase class II%2C N-terminal domain~TIGRFAM: phenylalanyl-tRNA synthetase%2C alpha subunit gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0957 Arch_0958 Arch_0958 Arch_0958 1085408 1085758 + late embryogenesis abundant protein%2C putative / LEA protein%2C putative KEGG: late embryogenesis abundant protein%2C putative / LEA protein%2C putative~SPTR: Q1XI26 PvLEA1 protein gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0958 Arch_0959 Arch_0959 Arch_0959 1085877 1086794 - dihydrodipicolinate synthetase COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase~InterPro IPR020625:IPR013785:IPR002220~KEGG: ckp:ckrop_1871 dihydrodipicolinate synthase~PFAM: dihydrodipicolinate synthetase~SPTR: C0W1Z6 Possible dihydrodipicolinate synthase~PFAM: Dihydrodipicolinate synthetase family gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0959 Arch_0960 Arch_0960 Arch_0960 1086806 1087615 - ABC transporter related protein COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase~InterPro IPR003439:IPR017871:IPR003593:IPR013563~KEGG: apv:Apar_0932 ABC transporter related~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase~SPTR: A7BBZ2 Putative uncharacterized protein~PFAM: ABC transporter%3B Oligopeptide/dipeptide transporter%2C C-terminal region gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0960 Arch_0961 Arch_0961 Arch_0961 1087612 1089648 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component~InterProIPR010066:IPR003439:IPR000515:IPR017871:IPR 003593:IPR013563~KEGG: ele:Elen_2148 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter related%3B binding-protein-dependent transport systems inner membrane component%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase~SPTR: A7BBZ1 Putative uncharacterized protein~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter%3B Binding-protein-dependent transport system inner membrane component%3B Oligopeptide/dipeptide transporter%2C C-terminal region gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0961 Arch_0962 Arch_0962 Arch_0962 1089651 1090601 - binding-protein-dependent transport systems inner membrane component COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: ele:Elen_2147 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C2GJT1 ABC superfamily ATP binding cassette transporter%2C membrane protein~PFAM: Binding-protein-dependent transport system inner membrane component gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0962 Arch_0963 Arch_0963 Arch_0963 1090695 1092266 - extracellular solute-binding protein family 5 COGs: COG0747 ABC-type dipeptide transport system periplasmic component~InterPro IPR000914~KEGG: ccu:Ccur_06680 ABC-type dipeptide transport system%2C periplasmic component~PFAM: extracellular solute-binding protein family 5~SPTR: A7BBY9 Putative uncharacterized protein~PFAM: Bacterial extracellular solute-binding proteins%2C family 5 Middle gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0963 Arch_0964 Arch_0964 Arch_0964 1092492 1093388 - tRNA/rRNA methyltransferase (SpoU) COGs: COG0566 rRNA methylase~InterPro IPR013123:IPR001537~KEGG: xce:Xcel_1319 tRNA/rRNA methyltransferase (SpoU)~PFAM: tRNA/rRNA methyltransferase (SpoU)%3B RNA 2-O ribose methyltransferase substrate binding~SPTR: D0WN38 Putative 23S rRNA methyltransferase~PFAM: SpoU rRNA Methylase family gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0964 Arch_0965 Arch_0965 Arch_0965 1093474 1093854 - ribosomal protein L20 COGs: COG0292 Ribosomal protein L20~InterPro IPR005813~KEGG: xce:Xcel_1318 ribosomal protein L20~PFAM: ribosomal protein L20~SPTR: D0WN39 Ribosomal protein L20~TIGRFAM: ribosomal protein L20~PFAM: Ribosomal protein L20~TIGRFAM: ribosomal protein L20 gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0965 Arch_0966 Arch_0966 Arch_0966 1093885 1094079 - ribosomal protein L35 InterPro IPR001706:IPR018265~KEGG: jde:Jden_1104 ribosomal protein L35~PFAM: ribosomal protein L35~SPTR: C7R3Q3 50S ribosomal protein L35~TIGRFAM: ribosomal protein L35~PFAM: Ribosomal protein L35~TIGRFAM: ribosomal protein L35 gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0966 Arch_0967 Arch_0967 Arch_0967 1094171 1094779 - translation initiation factor IF-3 COGs: COG0290 Translation initiation factor 3 (IF-3)~InterPro IPR019815:IPR019814:IPR001288:IPR019813~KEGG: jde:Jden_1103 translation initiation factor IF-3~PFAM: Translation initiation factor 3-like~SPTR: D0WN41 Translation initiation factor IF-3~TIGRFAM: translation initiation factor IF-3~PFAM: Translation initiation factor IF-3%2C C-terminal domain%3B Translation initiation factor IF-3%2C N-terminal domain~TIGRFAM: translation initiation factor IF-3 gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0967 Arch_0968 Arch_0968 Arch_0968 1095041 1095763 - conserved hypothetical protein KEGG: jde:Jden_1097 hypothetical protein~SPTR: D0WN42 Putative uncharacterized protein gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0968 Arch_0969 Arch_0969 Arch_0969 1095756 1096295 - hypothetical protein KEGG: bcv:Bcav_2391 hypothetical protein~SPTR: D0WN44 Putative uncharacterized protein gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0969 Arch_0970 Arch_0970 Arch_0970 1096463 1097227 + protein of unknown function DUF125 transmembrane COGs: COG1814 Uncharacterized membrane protein~InterPro IPR008217~KEGG: msm:MSMEG_1942 integral membrane protein~PFAM: protein of unknown function DUF125 transmembrane~SPTR: B5GGH5 Putative uncharacterized protein~PFAM: VIT family gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0970 Arch_0971 Arch_0971 Arch_0971 1097237 1098037 - undecaprenyl diphosphate synthase COGs: COG0020 Undecaprenyl pyrophosphate synthase~InterPro IPR001441:IPR018520~KEGG: ach:Achl_1961 undecaprenyl diphosphate synthase~PFAM: Di-trans-poly-cis-decaprenylcistransferase~PRIAM: Di-trans%2Cpoly-cis-decaprenylcistransferase~SPTR: C1RP29 Undecaprenyl pyrophosphate synthetase~TIGRFAM: undecaprenyl diphosphate synthase~PFAM: Putative undecaprenyl diphosphate synthase~TIGRFAM: undecaprenyl diphosphate synthase gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0971 Arch_0972 Arch_0972 Arch_0972 1098044 1098775 - DNA repair protein RecO COGs: COG1381 Recombinational DNA repair protein (RecF pathway)~InterPro IPR003717~KEGG: xce:Xcel_2177 DNA repair protein RecO~PFAM: Recombination protein O RecO~SPTR: D1BUV6 DNA repair protein RecO~TIGRFAM: DNA repair protein RecO~PFAM: Recombination protein O C terminal%3B Recombination protein O N terminal~TIGRFAM: DNA repair protein RecO gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0972 Arch_0973 Arch_0973 Arch_0973 1098782 1099714 - GTP-binding protein Era COGs: COG1159 GTPase~InterProIPR009019:IPR005225:IPR005662:IPR004044:IPR 015946:IPR002917~KEGG: kse:Ksed_11760 GTP-binding protein Era~PFAM: GTP-binding protein HSR1-related%3B KH type 2 domain protein~SPTR: A7BE67 Putative uncharacterized protein~TIGRFAM: GTP-binding protein Era%3B small GTP-binding protein~PFAM: KH domain%3B GTPase of unknown function~TIGRFAM: GTP-binding protein Era%3B small GTP-binding protein domain gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0973 Arch_0974 Arch_0974 Arch_0974 1099711 1100973 - CBS domain containing protein COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR000644:IPR005170~KEGG: xce:Xcel_2186 CBS domain containing protein~PFAM: CBS domain containing protein%3B transporter-associated region~SMART: CBS domain containing protein~SPTR: D0WN55 Integral membrane transporter with CBS domain~PFAM: CBS domain%3B Transporter associated domain gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0974 Arch_0975 Arch_0975 Arch_0975 1100976 1101488 - protein of unknown function UPF0054 COGs: COG0319 metal-dependent hydrolase~InterPro IPR002036:IPR020549~KEGG: kra:Krad_3386 protein of unknown function UPF0054~PFAM: protein of unknown function UPF0054~SPTR: D0WN56 Putative metalloprotease~PFAM: Uncharacterized protein family UPF0054~TIGRFAM: conserved hypothetical protein TIGR00043 gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0975 Arch_0976 Arch_0976 Arch_0976 1101481 1102446 - PhoH family protein COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase~InterPro IPR003714~KEGG: bcv:Bcav_1750 PhoH family protein~PFAM: PhoH family protein~SPTR: D0WN57 PhoH family protein~PFAM: PhoH-like protein gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0976 Arch_0977 Arch_0977 Arch_0977 1102457 1103194 - protein of unknown function DUF558 COGs: COG1385 conserved hypothetical protein~InterPro IPR015947:IPR006700~KEGG: jde:Jden_1548 protein of unknown function DUF558~PFAM: protein of unknown function DUF558~SPTR: C7R526 Putative uncharacterized protein~PFAM: RNA methyltransferase~TIGRFAM: RNA methyltransferase%2C RsmE family gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0977 Arch_0978 Arch_0978 Arch_0978 1103194 1104333 - chaperone protein DnaJ COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~InterProIPR001623:IPR008971:IPR001305:IPR012724:IPR 018253:IPR002939:IPR003095~KEGG: jde:Jden_1549 chaperone DnaJ domain protein~PFAM: chaperone DnaJ domain protein%3B heat shock protein DnaJ domain protein%3B DnaJ central domain protein~SMART: heat shock protein DnaJ domain protein~SPTR: D0WN59 Chaperone protein DnaJ~TIGRFAM: chaperone protein DnaJ~PFAM: DnaJ C terminal region%3B DnaJ central domain (4 repeats)%3B DnaJ domain~TIGRFAM: chaperone protein DnaJ gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0978 Arch_0979 Arch_0979 Arch_0979 1104372 1105400 - heat-inducible transcription repressor HrcA COGs: COG1420 Transcriptional regulator of heat shock gene~InterPro IPR002571:IPR011991:IPR001034~KEGG: bcv:Bcav_1748 heat-inducible transcription repressor HrcA~PFAM: Negative regulator of class I heat shock protein%3B regulatory protein DeoR~SPTR: D0WN60 Transcription repressor HrcA~TIGRFAM: heat-inducible transcription repressor HrcA~PFAM: DeoR-like helix-turn-helix domain%3B HrcA protein C terminal domain~TIGRFAM: heat shock gene repressor HrcA gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0979 Arch_0980 Arch_0980 Arch_0980 1105567 1105815 - trafficking protein B KEGG: ngk:NGK_0895 trafficking protein B~SPTR: C2CT09 PilT protein domain protein~PFAM: PIN domain gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0980 Arch_0981 Arch_0981 Arch_0981 1106448 1106681 - pseudogene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0981 Arch_0982 Arch_0982 Arch_0982 1106761 1109196 - conserved hypothetical protein KEGG: hypothetical protein~SPTR: C1FFK9 Predicted protein gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0982 Arch_0983 Arch_0983 Arch_0983 1109486 1110162 - pseudogene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0983 Arch_0984 Arch_0984 Arch_0984 1110310 1111188 + conserved hypothetical protein KEGG: aau:AAur_2236 hypothetical protein~SPTR: D0WN61 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3097) gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0984 Arch_0985 Arch_0985 Arch_0985 1111224 1111841 - hypothetical protein KEGG: nca:Noca_3265 hypothetical protein~SPTR: A1SLT2 Putative uncharacterized protein gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0985 Arch_0986 Arch_0986 Arch_0986 1112070 1113254 - oxygen-independent coproporphyrinogen III oxidase COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase~InterProIPR004559:IPR013785:IPR006638:IPR007197:IPR 010723~KEGG: cms:CMS_1742 coproporphyrinogen III oxidase~PFAM: HemN domain protein%3B Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: D0WN64 Putative oxygen-independent coproporphyrinogen III oxidase~TIGRFAM: oxygen-independent coproporphyrinogen III oxidase~PFAM: Radical SAM superfamily%3B HemN C-terminal region~TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0986 Arch_0987 Arch_0987 Arch_0987 1113251 1114069 - tRNA (guanine-N(7)-)-methyltransferase COGs: COG0220 S-adenosylmethionine-dependent methyltransferase~InterPro IPR003358~KEGG: kse:Ksed_11630 tRNA (guanine-N(7)-)-methyltransferase~PFAM: putative methyltransferase~SPTR: D0WN65 tRNA (Guanine-N(7)-)-methyltransferase~TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase~PFAM: Putative methyltransferase~TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0987 Arch_0988 Arch_0988 Arch_0988 1114066 1115925 - GTP-binding protein LepA COGs: COG0481 Membrane GTPase LepA~InterProIPR009000:IPR009022:IPR005225:IPR006297:IPR 000795:IPR000640:IPR004161:IPR013842~KEGG: bcv:Bcav_1744 GTP-binding protein LepA~PFAM: GTP-binding protein LepA domain protein%3B protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein%3B elongation factor G domain protein~SPTR: D0WN67 GTP-binding protein LepA~TIGRFAM: GTP-binding protein LepA%3B small GTP-binding protein~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B GTP-binding protein LepA C-terminus~TIGRFAM: GTP-binding protein LepA%3B small GTP-binding protein domain gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0988 Arch_0989 Arch_0989 Arch_0989 1116003 1116599 + hypothetical protein KEGG: hypothetical protein%3B K01533 Cu2+-exporting ATPase~SPTR: D0WN68 Putative uncharacterized protein gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0989 Arch_0990 Arch_0990 Arch_0990 1116620 1117120 + membrane-flanked domain protein InterPro IPR005182~KEGG: nfa:nfa9960 hypothetical protein~PFAM: membrane-flanked domain~SPTR: D0WN69 Bacterial membrane flanked domain protein~manually curated~PFAM: Bacterial membrane flanked domain gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0990 Arch_0991 Arch_0991 Arch_0991 1117123 1117716 + hypothetical protein InterPro IPR011067~KEGG: nca:Noca_3690 hypothetical protein~SPTR: C0W2Y2 Putative uncharacterized protein~PFAM: PemK-like protein gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0991 Arch_0992 Arch_0992 Arch_0992 1117924 1118190 + ribosomal protein S20 InterPro IPR002583~KEGG: bcv:Bcav_1740 ribosomal protein S20~PFAM: ribosomal protein S20~SPTR: D0WN72 Ribosomal protein S20~TIGRFAM: ribosomal protein S20~PFAM: Ribosomal protein S20~TIGRFAM: ribosomal protein S20 gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0992 Arch_0993 Arch_0993 Arch_0993 1118287 1119738 - NAD(P)(+) transhydrogenase (AB-specific) COGs: COG1282 NAD/NADP transhydrogenase beta subunit~InterPro IPR012136:IPR004003~KEGG: shi:Shel_24220 NAD/NADP transhydrogenase beta subunit~PFAM: NAD(P) transhydrogenase beta subunit~PRIAM: NAD(P)(+) transhydrogenase (AB-specific)~SPTR: C7N1Y9 NAD/NADP transhydrogenase beta subunit~PFAM: NAD(P) transhydrogenase beta subunit gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0993 Arch_0994 Arch_0994 Arch_0994 1119742 1121274 - NAD(P) transhydrogenase%2C alpha subunit COGs: COG3288 NAD/NADP transhydrogenase alpha subunit~InterProIPR016040:IPR004571:IPR008143:IPR007886:IPR 007698~KEGG: cur:cur_1513 NAD(P) transhydrogenase subunit alpha~PFAM: alanine dehydrogenase/PNT domain protein~SPTR: D0WN83 NAD(P)(+) transhydrogenase%2C alpha subunit~TIGRFAM: NAD(P) transhydrogenase%2C alpha subunit~PFAM: Alanine dehydrogenase/PNT%2C C-terminal domain%3B Alanine dehydrogenase/PNT%2C N-terminal domain~TIGRFAM: NAD(P) transhydrogenase%2C alpha subunit gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0994 Arch_0995 Arch_0995 Arch_0995 1121328 1122293 - DNA polymerase III%2C delta subunit COGs: COG1466 DNA polymerase III delta subunit~InterPro IPR008921:IPR005790:IPR010372~KEGG: bcv:Bcav_1739 DNA polymerase III%2C delta subunit~PFAM: DNA polymerase III delta~SPTR: C0W2X5 DNA polymerase III%2C delta subunit~TIGRFAM: DNA polymerase III%2C delta subunit~PFAM: DNA polymerase III%2C delta subunit~TIGRFAM: DNA polymerase III%2C delta subunit gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0995 Arch_0996 Arch_0996 Arch_0996 1122298 1123728 - ComEC/Rec2-related protein COGs: COG0658 membrane metal-binding protein~InterPro IPR004477~KEGG: jde:Jden_1561 ComEC/Rec2-related protein~PFAM: ComEC/Rec2-related protein~SPTR: C0W2X3 Possible ComEC operon protein~TIGRFAM: ComEC/Rec2-related protein~PFAM: Competence protein~TIGRFAM: ComEC/Rec2-related protein gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0996 Arch_0997 Arch_0997 Arch_0997 1123728 1124582 - competence protein ComEA helix-hairpin-helix repeat protein COGs: COG1555 DNA uptake protein and related DNA-binding protein~InterProIPR010994:IPR004509:IPR003583:IPR019554:IPR 000445~KEGG: bcv:Bcav_1737 competence protein ComEA helix-hairpin-helix repeat protein~PFAM: Soluble ligand binding domain%3B helix-hairpin-helix motif~SMART: Helix-hairpin-helix DNA-binding class 1~SPTR: C5C480 Competence protein ComEA helix-hairpin-helix repeat protein~TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein~PFAM: SLBB domain%3B Helix-hairpin-helix motif~TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region%3B comEA protein gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0997 Arch_0998 Arch_0998 Arch_0998 1124647 1126455 + protein of unknown function DUF853 NPT hydrolase putative COGs: COG0433 ATPase~InterPro IPR008571~KEGG: bcv:Bcav_1736 protein of unknown function DUF853 NPT hydrolase putative~PFAM: protein of unknown function DUF853 NPT hydrolase putative~SPTR: D0WN89 Putative ATP-binding protein~PFAM: Bacterial protein of unknown function (DUF853) gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0998 Arch_0999 Arch_0999 Arch_0999 1126547 1127515 - Aldose 1-epimerase COGs: COG2017 Galactose mutarotase~InterPro IPR011013:IPR014718:IPR008183~KEGG: ara:Arad_14113 aldose epimerase~PFAM: Aldose 1-epimerase~SPTR: D0WN90 Putative aldose epimerase~PFAM: Aldose 1-epimerase gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_0999 Arch_1000 Arch_1000 Arch_1000 1127705 1130584 - leucyl-tRNA synthetase COGs: COG0495 Leucyl-tRNA synthetase~InterProIPR009008:IPR009080:IPR002302:IPR001412:IPR 014729:IPR002300:IPR013155~KEGG: bcv:Bcav_1730 leucyl-tRNA synthetase~PFAM: tRNA synthetase valyl/leucyl anticodon-binding%3B aminoacyl-tRNA synthetase class Ia~SPTR: D0WN91 Leucine--tRNA ligase~TIGRFAM: leucyl-tRNA synthetase~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B tRNA synthetases class I (M)%3B Anticodon-binding domain~TIGRFAM: leucyl-tRNA synthetase%2C eubacterial and mitochondrial family gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1000 Arch_1001 Arch_1001 Arch_1001 1130702 1131139 + histidine triad (HIT) protein COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase~InterPro IPR011146:IPR001310:IPR011151~KEGG: rha:RHA1_ro04743 histidine triad (HIT) protein~PFAM: histidine triad (HIT) protein~SPTR: C2BUY1 Histidine triad (HIT) protein~PFAM: HIT domain gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1001 Arch_1002 Arch_1002 Arch_1002 1131147 1131845 - Vitamin K epoxide reductase COGs: COG4243 membrane protein~InterPro IPR012932~KEGG: bcv:Bcav_1719 vitamin K epoxide reductase~PFAM: Vitamin K epoxide reductase~SMART: Vitamin K epoxide reductase~SPTR: D0WN93 Vitamin K epoxide reductase~PFAM: Vitamin K epoxide reductase family gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1002 Arch_1003 Arch_1003 Arch_1003 1131820 1132587 - HAD-superfamily hydrolase%2C subfamily IIB COGs: COG0561 hydrolase of the HAD superfamily~InterPro IPR006379:IPR013200~KEGG: bcv:Bcav_1662 hypothetical protein~PFAM: Haloacid dehalogenase domain protein hydrolase type 3~SPTR: D0WN94 HAD-superfamily hydrolase subfamily IIB~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IIB~PFAM: Eukaryotic phosphomannomutase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IIB gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1003 Arch_1004 Arch_1004 Arch_1004 1132676 1133947 + protein of unknown function UPF0118 COGs: COG0628 permease~InterPro IPR002549~KEGG: xce:Xcel_2637 protein of unknown function UPF0118~PFAM: protein of unknown function UPF0118~SPTR: D1BX83 Putative uncharacterized protein~PFAM: Domain of unknown function DUF20 gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1004 Arch_1005 Arch_1005 Arch_1005 1134024 1134731 + purine or other phosphorylase family 1 COGs: COG0813 Purine-nucleoside phosphorylase~InterPro IPR000845~KEGG: kse:Ksed_10970 purine-nucleoside phosphorylase~PFAM: purine or other phosphorylase family 1~SPTR: C0W1W4 Purine nucleoside phosphorylase~PFAM: Phosphorylase superfamily~TIGRFAM: purine-nucleoside phosphorylase%2C family 1 (deoD) gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1005 Arch_1006 Arch_1006 Arch_1006 1135169 1136158 + ABC transporter related protein COGs: COG1135 ABC-type metal ion transport system ATPase component~InterPro IPR003439:IPR017871:IPR003593~KEGG: bfa:Bfae_03410 ABC-type metal ion transport system%2C ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0WN99 D-methionine ABC transporter%2C ATP-binding protein~PFAM: ABC transporter gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1006 Arch_1007 Arch_1007 Arch_1007 1136155 1136889 + binding-protein-dependent transport systems inner membrane component COGs: COG2011 ABC-type metal ion transport system permease component~InterPro IPR000515~KEGG: vsp:VS_2383 probable D-methionine transport system permease protein MetI~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C2BTH7 Metal ion ABC superfamily ATP binding cassette transporter%2C membrane protein~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1007 Arch_1008 Arch_1008 Arch_1008 1137015 1137839 + NLPA lipoprotein COGs: COG1464 ABC-type metal ion transport system periplasmic component/surface antigen~InterPro IPR004872~KEGG: rsa:RSal33209_1229 ABC transporter substrate-binding protein~PFAM: NLPA lipoprotein~SPTR: D0WNA1 Methionine ABC transporter%2C periplasmic methionine-binding protein~PFAM: NLPA lipoprotein~TIGRFAM: lipoprotein%2C YaeC family gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1008 Arch_1009 Arch_1009 Arch_1009 1137806 1137994 - hypothetical protein gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1009 Arch_1010 Arch_1010 Arch_1010 1138085 1139659 + sodium/proline symporter COGs: COG0591 Na+/proline symporter~InterPro IPR011851:IPR019900:IPR001734:IPR018212~KEGG: krh:KRH_05020 sodium/proline symporter~PFAM: Na+/solute symporter~SPTR: C0W231 SSS family proline:sodium (Na+) symporter OpuE~TIGRFAM: sodium/proline symporter%3B SSS sodium solute transporter superfamily~PFAM: Sodium:solute symporter family~TIGRFAM: sodium/proline symporter%3B SSS sodium solute transporter superfamily gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1010 Arch_1011 Arch_1011 Arch_1011 1139874 1141178 - TRAP dicarboxylate transporter%2C DctM subunit COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component~InterPro IPR004681:IPR010656~KEGG: cef:CE2239 putative C4-dicarboxylate permease large protein~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit~SPTR: Q8FNA6 Putative C4-dicarboxylate permease large protein~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: DctM-like transporters~TIGRFAM: TRAP transporter%2C DctM subunit gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1011 Arch_1012 Arch_1012 Arch_1012 1141175 1141738 - Tripartite ATP-independent periplasmic transporter DctQ component COGs: COG3090 TRAP-type C4-dicarboxylate transport system small permease component~InterPro IPR007387~KEGG: cef:CE2240 putative C4-dicarboxylate permease small protein~PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~SPTR: Q8FNA5 Putative C4-dicarboxylate permease small protein~PFAM: Tripartite ATP-independent periplasmic transporters%2C DctQ component gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1012 Arch_1013 Arch_1013 Arch_1013 1141738 1142772 - TRAP dicarboxylate transporter%2C DctP subunit COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component~InterPro IPR004682:IPR018389~KEGG: cgt:cgR_2222 hypothetical protein~PFAM: Extracellular solute-binding protein%2C family 7~SPTR: D0YQL8 C4-dicarboxylate transport system C4-dicarboxylate-binding protein~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Bacterial extracellular solute-binding protein%2C family 7~TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor%2C DctP family gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1013 Arch_1014 Arch_1014 Arch_1014 1142863 1143513 - Pyroglutamyl-peptidase I COGs: COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase)~InterPro IPR016125:IPR000816~KEGG: krh:KRH_07020 putative pyrrolidone-carboxylate peptidase~PFAM: peptidase C15 pyroglutamyl peptidase I~PRIAM: Pyroglutamyl-peptidase I~SPTR: B2GJM0 Putative pyrrolidone-carboxylate peptidase~PFAM: Pyroglutamyl peptidase~TIGRFAM: pyroglutamyl-peptidase I gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1014 Arch_1015 Arch_1015 Arch_1015 1143704 1149052 - peptidase S8 and S53 subtilisin kexin sedolisin InterPro IPR000209:IPR003137:IPR010435~KEGG: bfa:Bfae_23940 subtilisin-like serine protease~PFAM: peptidase S8 and S53 subtilisin kexin sedolisin%3B protease-associated PA domain protein%3B protein of unknown function DUF1034~SPTR: C7MFG9 Subtilisin-like serine protease~PFAM: PA domain%3B Fn3-like domain (DUF1034)%3B Subtilase family gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1015 Arch_1016 Arch_1016 Arch_1016 1149271 1149939 + putative integral membrane protein KEGG: cdi:DIP2140 putative integral membrane protein~SPTR: Q6NEW9 Putative integral membrane protein~manually curated gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1016 Arch_1017 Arch_1017 Arch_1017 1149902 1150531 + alpha/beta hydrolase fold protein InterPro IPR000073~KEGG: cdi:DIP2139 hypothetical protein~PFAM: alpha/beta hydrolase fold~SPTR: Q6NEX0 Putative uncharacterized protein~PFAM: alpha/beta hydrolase fold gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1017 Arch_1018 Arch_1018 Arch_1018 1150515 1153703 - lysyl-tRNA synthetase COGs: COG1190 Lysyl-tRNA synthetase (class II)~InterProIPR016027:IPR002313:IPR006195:IPR012340:IPR 007424:IPR007425:IPR007426:IPR004365:IPR004364:IPR018149~KEGG: cdi:DIP2138 lysyl-tRNA synthetase~PFAM: tRNA synthetase class II (D K and N)%3B protein of unknown function DUF470%3B protein of unknown function DUF471%3B protein of unknown function DUF472%3B nucleic acid binding OB-fold tRNA/helicase-type~PRIAM: Lysine--tRNA ligase~SPTR: Q6NEX1 Lysyl-tRNA synthetase~TIGRFAM: lysyl-tRNA synthetase~PFAM: Uncharacterized conserved protein (DUF2156)%3B tRNA synthetases class II (D%2C K and N)%3B OB-fold nucleic acid binding domain~TIGRFAM: lysyl-tRNA synthetase%2C eukaryotic and non-spirochete bacterial gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1018 Arch_1019 Arch_1019 Arch_1019 1153740 1154822 - aspartate carbamoyltransferase COGs: COG0540 Aspartate carbamoyltransferase catalytic chain~InterPro IPR006130:IPR002082:IPR006132:IPR006131~KEGG: cpf:CPF_1387 aspartate carbamoyltransferase catalytic subunit~PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain%3B aspartate/ornithine carbamoyltransferase Asp/Orn-binding region~SPTR: C2KYS1 Aspartate carbamoyltransferase~TIGRFAM: aspartate carbamoyltransferase~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding domain%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain%3B Aspartate carbamoyltransferase regulatory chain%2C metal binding domain~TIGRFAM: aspartate carbamoyltransferase gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1019 Arch_1020 Arch_1020 Arch_1020 1154827 1155471 - orotate phosphoribosyltransferase COGs: COG0461 Orotate phosphoribosyltransferase~InterPro IPR004467:IPR000836~KEGG: bay:RBAM_015390 orotate phosphoribosyltransferase~PFAM: phosphoribosyltransferase~PRIAM: Orotate phosphoribosyltransferase~SPTR: B9Y746 Putative uncharacterized protein~TIGRFAM: orotate phosphoribosyltransferase~PFAM: Phosphoribosyl transferase domain~TIGRFAM: orotate phosphoribosyltransferase gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1020 Arch_1021 Arch_1021 Arch_1021 1155468 1156166 - orotidine 5'-phosphate decarboxylase COGs: COG0284 Orotidine-5'-phosphate decarboxylase~InterProIPR011060:IPR014732:IPR018089:IPR013785:IPR 001754~KEGG: ssp:SSP1568 orotidine 5'-phosphate decarboxylase~PFAM: Orotidine 5'-phosphate decarboxylase~PRIAM: Orotidine-5'-phosphate decarboxylase~SPTR: C7GD17 Orotidine 5'-phosphate decarboxylase~TIGRFAM: orotidine 5'-phosphate decarboxylase~PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family~TIGRFAM: orotidine 5'-phosphate decarboxylase%2C subfamily 1 gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1021 Arch_1022 Arch_1022 Arch_1022 1156169 1157092 - dihydroorotate dehydrogenase family protein COGs: COG0167 Dihydroorotate dehydrogenase~InterPro IPR005720:IPR012135:IPR001295:IPR013785~KEGG: gtn:GTNG_1011 dihydroorotate dehydrogenase 1B~PFAM: dihydroorotate oxidase~SPTR: C2KYS4 Dihydroorotate oxidase~TIGRFAM: dihydroorotate dehydrogenase family protein~PFAM: Dihydroorotate dehydrogenase~TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1022 Arch_1023 Arch_1023 Arch_1023 1157092 1157847 - oxidoreductase FAD/NAD(P)-binding domain protein COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase~InterProIPR017938:IPR012165:IPR017927:IPR008333:IPR 001433:IPR019480:IPR001834~KEGG: oih:OB1492 dihydroorotate dehydrogenase~PFAM: oxidoreductase FAD/NAD(P)-binding domain protein%3B Oxidoreductase FAD-binding domain protein%3B Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain~SPTR: B0MVE6 Putative uncharacterized protein~PFAM: Oxidoreductase FAD-binding domain%3B Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B%3B Oxidoreductase NAD-binding domain gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1023 Arch_1024 Arch_1024 Arch_1024 1157853 1161044 - carbamoyl-phosphate synthase%2C large subunit COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ)~InterProIPR016185:IPR005480:IPR006275:IPR011761:IPR 005479:IPR013817:IPR013816:IPR005481:IPR011607:IPR005483~KEGG: gwc:GWCH70_1047 carbamoyl-phosphate synthase%2C large subunit~PFAM: Carbamoyl-phosphate synthase L chain ATP-binding%3B Carbamoyl-phosphate synthetase large chain domain protein%3B Carbamoyl-phosphate synthetase large chain oligomerisation%3B MGS domain protein~SPTR: B6FK85 Putative uncharacterized protein~TIGRFAM: carbamoyl-phosphate synthase%2C large subunit~PFAM: Carbamoyl-phosphate synthase L chain%2C ATP binding domain%3B MGS-like domain%3B Carbamoyl-phosphate synthetase large chain%2C oligomerisation domain%3B Carbamoyl-phosphate synthase L chain%2C N-terminal domain~TIGRFAM: carbamoyl-phosphate synthase%2C large subunit gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1024 Arch_1025 Arch_1025 Arch_1025 1161068 1162315 - dihydroorotase%2C multifunctional complex type COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase~InterPro IPR011059:IPR004722:IPR002195:IPR006680~KEGG: bcl:ABC2335 dihydroorotase~PFAM: amidohydrolase~SPTR: B0MVE2 Dihydroorotase~TIGRFAM: dihydroorotase%2C multifunctional complex type~PFAM: Amidohydrolase family~TIGRFAM: dihydroorotase%2C multifunctional complex type gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1025 Arch_1026 Arch_1026 Arch_1026 1162397 1162561 + hypothetical protein gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1026 Arch_1027 Arch_1027 Arch_1027 1162716 1163438 - hypothetical protein KEGG: pac:PPA1874 hypothetical protein~SPTR: D0YU73 Putative uncharacterized protein gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1027 Arch_1028 Arch_1028 Arch_1028 1163513 1165099 - Na+/H+ antiporter NhaC COGs: COG1757 Na+/H+ antiporter~InterPro IPR018461~KEGG: kse:Ksed_07900 Na+/H+ antiporter~PFAM: Na+/H+ antiporter NhaC-like~SPTR: C7NF22 Na+/H+ antiporter~PFAM: Na+/H+ antiporter family gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1028 Arch_1029 Arch_1029 Arch_1029 1165270 1165515 + ribosomal protein L31 COGs: COG0254 Ribosomal protein L31~InterPro IPR002150~KEGG: sco:SCO3427 50S ribosomal protein L31 type B~PFAM: ribosomal protein L31~SPTR: Q9X8K6 50S ribosomal protein L31 type B 2~TIGRFAM: ribosomal protein L31~PFAM: Ribosomal protein L31~TIGRFAM: ribosomal protein L31 gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1029 Arch_1030 Arch_1030 Arch_1030 1165523 1166440 - Alpha/beta hydrolase fold-3 domain protein COGs: COG0657 Esterase/lipase~InterPro IPR013094~KEGG: cro:ROD_05341 acetyl esterase~PFAM: Alpha/beta hydrolase fold-3 domain protein~SPTR: D0WP07 Acetyl esterase~PFAM: alpha/beta hydrolase fold gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1030 Arch_1031 Arch_1031 Arch_1031 1166441 1168003 - drug resistance transporter%2C EmrB/QacA subfamily COGs: COG2814 Arabinose efflux permease~InterPro IPR016196:IPR004638:IPR011701:IPR001411~KEGG: krh:KRH_22170 drug resistance efflux protein~PFAM: major facilitator superfamily MFS_1~SPTR: B2GIE2 Drug resistance efflux protein~TIGRFAM: drug resistance transporter%2C EmrB/QacA subfamily~PFAM: Major Facilitator Superfamily~TIGRFAM: drug resistance transporter%2C EmrB/QacA subfamily gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1031 Arch_1032 Arch_1032 Arch_1032 1168009 1168629 - transcriptional regulator%2C TetR family InterPro IPR009057:IPR001647:IPR012287~KEGG: mrd:Mrad2831_5885 TetR family transcriptional regulator~PFAM: regulatory protein TetR~SPTR: B1M8J9 Transcriptional regulator%2C TetR family~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1032 Arch_1033 Arch_1033 Arch_1033 1168669 1169037 - Camphor resistance CrcB protein COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation~InterPro IPR003691~KEGG: krh:KRH_08330 chromosome condensation/camphor resistance protein CrcB~PFAM: Camphor resistance CrcB protein~SPTR: B2GKQ1 Protein crcB homolog~PFAM: CrcB-like protein~TIGRFAM: crcB protein gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1033 Arch_1034 Arch_1034 Arch_1034 1169034 1169399 - Camphor resistance CrcB protein COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation~InterPro IPR003691~KEGG: gvi:gll2211 hypothetical protein~PFAM: Camphor resistance CrcB protein~SPTR: C2M9C5 Protein crcB homolog~PFAM: CrcB-like protein gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1034 Arch_1035 Arch_1035 Arch_1035 1169499 1170158 - SNARE associated Golgi protein-like protein COGs: COG0586 membrane-associated protein~InterPro IPR010916:IPR015414~KEGG: car:cauri_1244 hypothetical protein~PFAM: SNARE associated Golgi protein~SPTR: C3PG83 Putative membrane protein~PFAM: SNARE associated Golgi protein gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1035 Arch_1036 Arch_1036 Arch_1036 1170329 1171984 - sulphate transporter COGs: COG0659 Sulfate permease and related transporter (MFS superfamily)~InterPro IPR002645:IPR006162:IPR011547~KEGG: gbr:Gbro_3908 sulphate transporter~PFAM: sulphate transporter%3B Sulfate transporter/antisigma-factor antagonist STAS~SPTR: D0L3T1 Sulphate transporter~PFAM: Sulfate transporter family%3B STAS domain~TIGRFAM: high affinity sulphate transporter 1 gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1036 Arch_1037 Arch_1037 Arch_1037 1172175 1172937 - pseudogene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1037 Arch_1038 Arch_1038 Arch_1038 1173272 1176424 + LPXTG-motif cell wall anchor domain protein InterPro IPR008979:IPR019931~KEGG: amr:AM1_0150 hypothetical protein~SPTR: A7B9K1 Putative uncharacterized protein~TIGRFAM: LPXTG-motif cell wall anchor domain protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1038 Arch_1039 Arch_1039 Arch_1039 1177382 1177945 + conserved hypothetical protein KEGG: fma:FMG_0910 hypothetical protein~SPTR: B0S1T8 Putative uncharacterized protein gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1039 Arch_1040 Arch_1040 Arch_1040 1178253 1178420 - pseudogene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1040 Arch_1041 Arch_1041 Arch_1041 1178727 1179926 - transposase IS116/IS110/IS902 family protein InterPro IPR002525:IPR003346~KEGG: mlu:Mlut_12160 transposase~PFAM: transposase IS116/IS110/IS902 family protein%3B transposase IS111A/IS1328/IS1533~SPTR: C0W956 Transposase%2C IS111A/IS1328/IS1533 (Fragment)~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1041 Arch_1042 Arch_1042 Arch_1042 1180192 1180803 + pseudogene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1042 Arch_1043 Arch_1043 Arch_1043 1180953 1181525 - conserved hypothetical protein KEGG: pac:PPA1589 hypothetical protein~SPTR: C2KNY1 Putative uncharacterized protein gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1043 Arch_1044 Arch_1044 Arch_1044 1181616 1182524 + conserved hypothetical protein KEGG: nfa:pnf1680 hypothetical protein~SPTR: Q5YMJ7 Putative uncharacterized protein gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1044 Arch_1045 Arch_1045 Arch_1045 1182540 1183160 - hypothetical protein KEGG: SORBIDRAFT_07g023145%3B hypothetical protein~SPTR: C5YML5 Putative uncharacterized protein Sb07g023145 (Fragment) gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1045 Arch_1046 Arch_1046 Arch_1046 1183513 1183800 - hypothetical protein KEGG: mjl:Mjls_5646 hypothetical protein~SPTR: A7VN81 Putative uncharacterized protein gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1046 Arch_1047 Arch_1047 Arch_1047 1183892 1184185 - pseudogene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1047 Arch_1048 Arch_1048 Arch_1048 1184191 1184740 - pseudogene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1048 Arch_1049 Arch_1049 Arch_1049 1185071 1185538 + Abi family protein COGs: COG4823 Abortive infection bacteriophage resistance protein~InterPro IPR011664~KEGG: cdi:DIP2155 hypothetical protein~PFAM: Abi family protein~SPTR: Q6NEV8 Putative uncharacterized protein~manually curated~PFAM: Abi-like protein gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1049 Arch_1050 Arch_1050 Arch_1050 1185981 1186538 - hypothetical protein KEGG: rsq:Rsph17025_1504 RND family efflux transporter MFP subunit~SPTR: D0YUX9 Putative uncharacterized protein gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1050 Arch_1051 Arch_1051 Arch_1051 1186571 1187299 - restriction modification system DNA specificity domain protein COGs: COG0732 Restriction endonuclease S subunits~InterPro IPR000055~KEGG: bpt:Bpet3989 type I restriction-modification system%2C S subunit~PFAM: restriction modification system DNA specificity domain~SPTR: A9I6S0 Type I restriction-modification system%2C S subunit~manually curated~PFAM: Type I restriction modification DNA specificity domain gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1051 Arch_1052 Arch_1052 Arch_1052 1187320 1188069 - restriction modification system DNA specificity domain protein COGs: COG0732 Restriction endonuclease S subunits~InterPro IPR000055~KEGG: vei:Veis_1015 restriction modification system DNA specificity subunit~PFAM: restriction modification system DNA specificity domain~SPTR: B2N0G8 Putative type I restriction-modification system%2C S subunit~PFAM: Type I restriction modification DNA specificity domain gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1052 Arch_1053 Arch_1053 Arch_1053 1188066 1189538 - N-6 DNA methylase COGs: COG0286 Type I restriction-modification system methyltransferase subunit~InterPro IPR002052:IPR003356:IPR002296~KEGG: apa:APP7_1530 type I restriction-modification system%2C M subunit~PFAM: N-6 DNA methylase~SPTR: B3H2F7 Type I restriction-modification system%2C M subunit~PFAM: N-6 DNA Methylase%3B HsdM N-terminal domain gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1053 Arch_1054 Arch_1054 Arch_1054 1189552 1191936 - Type I site-specific deoxyribonuclease COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase~InterProIPR014021:IPR001650:IPR014001:IPR007409:IPR 006935:IPR013670~KEGG: pnu:Pnuc_1134 EcoEI R domain-containing protein~PFAM: EcoEI R domain protein%3B type III restriction protein res subunit%3B protein of unknown function DUF450%3B helicase domain protein~PRIAM: Type I site-specific deoxyribonuclease~SMART: DEAD-like helicase~SPTR: A4SXY6 EcoEI R%2C C-terminal domain protein~PFAM: Type I restriction enzyme R protein N terminus (HSDR_N)%3B EcoEI R protein C-terminal%3B Type III restriction enzyme%2C res subunit gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1054 Arch_1055 Arch_1055 Arch_1055 1191929 1192252 - hypothetical protein KEGG: ACAS2%3B acetyl-coenzyme a synthetase~SPTR: B8C359 Acetyl-coenzyme a synthetase (Fragment) gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1055 Arch_1056 Arch_1056 Arch_1056 1192579 1193169 + conserved hypothetical protein KEGG: ere:EUBREC_3502 hypothetical protein~SPTR: C0FM79 Putative uncharacterized protein gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1056 Arch_1057 Arch_1057 Arch_1057 1193166 1194023 + Domain of unknown function DUF1814 InterPro IPR014942~KEGG: ere:EUBREC_3503 hypothetical protein~PFAM: Domain of unknown function DUF1814~SPTR: A8RVS1 Putative uncharacterized protein~PFAM: Domain of unknown function (DUF1814) gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1057 Arch_1058 Arch_1058 Arch_1058 1194093 1194610 - pseudogene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1058 Arch_1059 Arch_1059 Arch_1059 1194750 1195553 + Methyltransferase type 11 InterPro IPR013216~KEGG: cdi:DIP0762 hypothetical protein~PFAM: Methyltransferase type 11~SPTR: Q6NIK7 Putative uncharacterized protein~PFAM: Methyltransferase domain gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1059 Arch_1060 Arch_1060 Arch_1060 1195587 1195928 + Cupin 2 conserved barrel domain protein InterPro IPR011051:IPR013096~KEGG: cdi:DIP0761 hypothetical protein~PFAM: Cupin 2 conserved barrel domain protein~SPTR: Q6NIK8 Putative uncharacterized protein~PFAM: Cupin domain gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1060 Arch_1061 Arch_1061 Arch_1061 1196498 1197232 + Domain of unknown function DUF1994 InterPro IPR018532~KEGG: xce:Xcel_3402 hypothetical protein~PFAM: Domain of unknown function DUF1994~SPTR: A7BB87 Putative uncharacterized protein~PFAM: Domain of unknown function (DUF1994) gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1061 Arch_1062 Arch_1062 Arch_1062 1197288 1198997 - Thiol-activated cytolysin InterPro IPR001869~KEGG: ssb:SSUBM407_0558 suilysin (hemolysin)~PFAM: Thiol-activated cytolysin~SPTR: O31241 Pyolysin~PFAM: Thiol-activated cytolysin gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1062 Arch_1063 Arch_1063 Arch_1063 1199606 1200223 - Phosphoglycerate mutase COGs: COG0406 Fructose-2 6-bisphosphatase~InterPro IPR001345:IPR013078~KEGG: jde:Jden_1640 phosphoglycerate mutase~PFAM: Phosphoglycerate mutase~SPTR: C2BVI5 Possible phosphoglycerate mutase~PFAM: Phosphoglycerate mutase family gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1063 Arch_1064 Arch_1064 Arch_1064 1200235 1200702 - iojap-like protein COGs: COG0799 Iojap protein~InterPro IPR004394~KEGG: jde:Jden_1641 iojap-like protein~PFAM: Iojap-related protein~SPTR: C0W2U5 Iojap family protein~TIGRFAM: iojap-like protein~PFAM: Domain of unknown function DUF143~TIGRFAM: iojap-related protein gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1064 Arch_1065 Arch_1065 Arch_1065 1200729 1201454 - hypothetical protein KEGG: hypothetical protein~SPTR: D0WNB1 Putative uncharacterized protein gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1065 Arch_1066 Arch_1066 Arch_1066 1201498 1202190 - nicotinate (nicotinamide) nucleotide adenylyltransferase COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase~InterPro IPR004821:IPR005248:IPR014729:IPR004820~KEGG: bcv:Bcav_1634 nicotinate (nicotinamide) nucleotide adenylyltransferase~PFAM: cytidylyltransferase~PRIAM: Nicotinate-nucleotide adenylyltransferase~SPTR: D0WNB2 Nicotinate-nucleotide adenylyltransferase~TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase%3B cytidyltransferase-related domain protein~PFAM: Cytidylyltransferase~TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase%3B cytidyltransferase-related domain gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1066 Arch_1067 Arch_1067 Arch_1067 1202362 1202727 + thioredoxin COGs: COG3118 Thioredoxin domain-containing protein~InterProIPR012336:IPR005746:IPR017936:IPR017937:IPR 012335:IPR013766:IPR006662~KEGG: cur:cur_1977 thioredoxin~PFAM: Thioredoxin domain~SPTR: B1VIY8 Thioredoxin~TIGRFAM: thioredoxin~PFAM: Thioredoxin~TIGRFAM: thioredoxin gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1067 Arch_1068 Arch_1068 Arch_1068 1202792 1203733 - conserved hypothetical protein InterPro IPR011251~KEGG: bcv:Bcav_1628 hypothetical protein~SPTR: D0WNB4 Nitrilotriacetate monooxygenase gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1068 Arch_1069 Arch_1069 Arch_1069 1204013 1205557 - GTP-binding protein Obg/CgtA COGs: COG0536 GTPase~InterProIPR006169:IPR015349:IPR014100:IPR006074:IPR 002917:IPR006073~KEGG: xce:Xcel_2258 GTP-binding protein Obg/CgtA~PFAM: GTP1/OBG sub domain protein%3B GTP-binding protein HSR1-related%3B GTP1/OBG domain protein~SPTR: D1BV37 GTP-binding protein Obg/CgtA~TIGRFAM: GTP-binding protein Obg/CgtA%3B Obg family GTPase CgtA~PFAM: GTPase of unknown function%3B Domain of unknown function (DUF1967)%3B GTP1/OBG~TIGRFAM: Obg family GTPase CgtA%3B Obg family GTPase CgtA%2C C-terminal extension%3B small GTP-binding protein domain gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1069 Arch_1070 Arch_1070 Arch_1070 1205658 1205915 - ribosomal protein L27 COGs: COG0211 Ribosomal protein L27~InterPro IPR001684:IPR018261~KEGG: sma:SAV_5468 50S ribosomal protein L27~PFAM: ribosomal protein L27~SPTR: D0WNB6 Ribosomal protein L27~TIGRFAM: ribosomal protein L27~PFAM: Ribosomal L27 protein~TIGRFAM: ribosomal protein L27 gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1070 Arch_1071 Arch_1071 Arch_1071 1205966 1206271 - ribosomal protein L21 COGs: COG0261 Ribosomal protein L21~InterPro IPR001787:IPR018258~KEGG: bcv:Bcav_1622 ribosomal protein L21~PFAM: ribosomal protein L21~SPTR: D0WNB7 Ribosomal protein L21~TIGRFAM: ribosomal protein L21~PFAM: Ribosomal prokaryotic L21 protein~TIGRFAM: ribosomal protein L21 gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1071 Arch_1072 Arch_1072 Arch_1072 1206433 1208952 - ribonuclease%2C Rne/Rng family COGs: COG1530 Ribonuclease G and E~InterProIPR016027:IPR004659:IPR003029:IPR012340:IPR 019307~KEGG: bcv:Bcav_1618 ribonuclease%2C Rne/Rng family~PFAM: RNA-binding protein AU-1/Ribonuclease E/G%3B RNA binding S1 domain protein~SPTR: D0WNB8 Putative S1 RNA binding domain protein~TIGRFAM: ribonuclease%2C Rne/Rng family~PFAM: Ribonuclease E/G family%3B S1 RNA binding domain~TIGRFAM: ribonuclease%2C Rne/Rng family gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1072 Arch_1073 Arch_1073 Arch_1073 1209434 1210933 + cytochrome bd ubiquinol oxidase subunit I COGs: COG1271 Cytochrome bd-type quinol oxidase subunit 1~InterPro IPR002585~KEGG: xce:Xcel_2267 cytochrome bd ubiquinol oxidase subunit I~PFAM: cytochrome bd ubiquinol oxidase subunit I~SPTR: D0WNB9 Cytochrome D ubiquinol oxidase%2C subunit I~PFAM: Bacterial Cytochrome Ubiquinol Oxidase gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1073 Arch_1074 Arch_1074 Arch_1074 1210952 1212091 + cytochrome d ubiquinol oxidase%2C subunit II COGs: COG1294 Cytochrome bd-type quinol oxidase subunit 2~InterPro IPR003317~KEGG: bcv:Bcav_1616 cytochrome d ubiquinol oxidase%2C subunit II~PFAM: cytochrome bd ubiquinol oxidase subunit II~SPTR: D0WNC0 Cytochrome D ubiquinol oxidase%2C subunit II~TIGRFAM: cytochrome d ubiquinol oxidase%2C subunit II~PFAM: Cytochrome oxidase subunit II~TIGRFAM: cytochrome d oxidase%2C subunit II (cydB) gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1074 Arch_1075 Arch_1075 Arch_1075 1212243 1213904 + ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydD COGs: COG4988 ABC-type transport system involved in cytochrome bd biosynthesis ATPase and permease components~InterProIPR011527:IPR014216:IPR003439:IPR017940:IPR 003593:IPR001140~KEGG: jde:Jden_1656 ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydD~PFAM: ABC transporter related%3B ABC transporter transmembrane region~SMART: AAA ATPase~SPTR: D0WNC1 ABC transporter%2C CydDC cysteine exporter family%2C permease/ATP-binding protein CydD~TIGRFAM: ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydD~PFAM: ABC transporter transmembrane region%3B ABC transporter~TIGRFAM: ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydD gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1075 Arch_1076 Arch_1076 Arch_1076 1213901 1215661 + ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydC COGs: COG4987 ABC-type transport system involved in cytochrome bd biosynthesis fused ATPase and permease components~InterProIPR011527:IPR014223:IPR003439:IPR017940:IPR 017871:IPR003593~KEGG: bcv:Bcav_1614 ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydC~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C0W2T3 ABC superfamily ATP binding cassette transporter%2C ABC protein CydC~TIGRFAM: ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydC~PFAM: ABC transporter~TIGRFAM: ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydC gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1076 Arch_1077 Arch_1077 Arch_1077 1215664 1217298 + GAF sensor signal transduction histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR003594:IPR003018:IPR011712~KEGG: bcv:Bcav_1613 GAF sensor signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B GAF domain protein%3B histidine kinase dimerisation and phosphoacceptor region~SMART: GAF domain protein%3B ATP-binding region ATPase domain protein~SPTR: D0WNC3 Putative two-component sensor~PFAM: Histidine kinase%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B GAF domain gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1077 Arch_1078 Arch_1078 Arch_1078 1217407 1218030 - two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterPro IPR011006:IPR000792:IPR001789:IPR011991~KEGG: jde:Jden_1659 two component transcriptional regulator%2C LuxR family~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: regulatory protein LuxR%3B response regulator receiver~SPTR: D0WNC4 DNA-binding response regulator%2C LuxR family~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1078 Arch_1079 Arch_1079 Arch_1079 1218071 1218925 - formamidopyrimidine-DNA glycosylase COGs: COG0266 Formamidopyrimidine-DNA glycosylase~InterProIPR012319:IPR010979:IPR000191:IPR000214:IPR 015886:IPR010663~KEGG: bcv:Bcav_1610 formamidopyrimidine-DNA glycosylase~PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein%3B DNA glycosylase/AP lyase%2C H2TH DNA-binding%3B zinc finger Fpg domain protein~PRIAM: DNA-formamidopyrimidine glycosylase~SPTR: C5C3G7 DNA glycosylase~TIGRFAM: formamidopyrimidine-DNA glycosylase~PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain%3B Formamidopyrimidine-DNA glycosylase N-terminal domain%3B Zinc finger found in FPG and IleRS~TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg) gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1079 Arch_1080 Arch_1080 Arch_1080 1218935 1219642 - ribonuclease III COGs: COG0571 dsRNA-specific ribonuclease~InterPro IPR000999:IPR011907:IPR001159:IPR014720~KEGG: bcv:Bcav_1609 ribonuclease III~PFAM: ribonuclease III%3B double-stranded RNA binding domain protein~PRIAM: Ribonuclease III~SMART: ribonuclease III%3B double-stranded RNA binding domain protein~SPTR: D0WNC5 Ribonuclease III~TIGRFAM: ribonuclease III~PFAM: RNase3 domain%3B Double-stranded RNA binding motif~TIGRFAM: ribonuclease III%2C bacterial gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1080 Arch_1081 Arch_1081 Arch_1081 1219645 1220196 - protein of unknown function DUF177 COGs: COG1399 metal-binding possibly nucleic acid-binding protein~InterPro IPR003772~KEGG: jde:Jden_1668 protein of unknown function DUF177~PFAM: protein of unknown function DUF177~SPTR: D0WNC6 Putative uncharacterized protein~PFAM: Uncharacterized ACR%2C COG1399 gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1081 Arch_1082 Arch_1082 Arch_1082 1220264 1220770 - conserved hypothetical protein KEGG: bcv:Bcav_1606 hypothetical protein~SPTR: D0WNC7 Putative uncharacterized protein gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1082 Arch_1083 Arch_1083 Arch_1083 1220767 1221243 - pantetheine-phosphate adenylyltransferase COGs: COG0669 Phosphopantetheine adenylyltransferase~InterPro IPR004821:IPR001980:IPR014729:IPR004820~KEGG: bcv:Bcav_1605 pantetheine-phosphate adenylyltransferase~PFAM: cytidylyltransferase~PRIAM: Pantetheine-phosphate adenylyltransferase~SPTR: C5C3G2 Pantetheine-phosphate adenylyltransferase~TIGRFAM: pantetheine-phosphate adenylyltransferase%3B cytidyltransferase-related domain protein~PFAM: Cytidylyltransferase~TIGRFAM: pantetheine-phosphate adenylyltransferase%2C bacterial%3B cytidyltransferase-related domain gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1083 Arch_1084 Arch_1084 Arch_1084 1221248 1221811 - methyltransferase COGs: COG0742 N6-adenine-specific methylase~InterPro IPR004398:IPR002052:IPR016065~KEGG: kra:Krad_1371 putative methyltransferase~PFAM: Protein of unknown function methylase putative~SPTR: A7BCZ1 Putative uncharacterized protein~TIGRFAM: methyltransferase~PFAM: Conserved hypothetical protein 95~TIGRFAM: RNA methyltransferase%2C RsmD family gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1084 Arch_1085 Arch_1085 Arch_1085 1221826 1224051 - DEAD/DEAH box helicase domain protein COGs: COG1200 RecG-like helicase~InterProIPR016027:IPR014021:IPR001650:IPR014001:IPR 004365:IPR011545~KEGG: xce:Xcel_2279 ATP-dependent DNA helicase RecG~PFAM: DEAD/DEAH box helicase domain protein%3B nucleic acid binding OB-fold tRNA/helicase-type%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: D0WND1 Putative ATP-dependent DNA helicase RecG~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase%3B OB-fold nucleic acid binding domain~TIGRFAM: ATP-dependent DNA helicase RecG gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1085 Arch_1086 Arch_1086 Arch_1086 1224285 1224476 + ribosomal protein L28 COGs: COG0227 Ribosomal protein L28~InterPro IPR001383~KEGG: jde:Jden_1676 ribosomal protein L28~PFAM: ribosomal protein L28~SPTR: C0W2R8 50S ribosomal protein L28~TIGRFAM: ribosomal protein L28~PFAM: Ribosomal L28 family~TIGRFAM: ribosomal protein L28 gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1086 Arch_1087 Arch_1087 Arch_1087 1224597 1225355 - ABC transporter related protein COGs: COG4604 ABC-type enterochelin transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: mlu:Mlut_16570 ABC-type enterochelin transport system%2C ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C5CC04 ABC-type enterochelin transport system%2C ATPase component~PFAM: ABC transporter gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1087 Arch_1088 Arch_1088 Arch_1088 1225352 1226353 - transport system permease protein COGs: COG4605 ABC-type enterochelin transport system permease component~InterPro IPR000522~KEGG: mlu:Mlut_16580 ABC-type enterochelin transport system%2C permease component~PFAM: transport system permease protein~SPTR: C5CC05 ABC-type enterochelin transport system%2C permease component~PFAM: FecCD transport family gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1088 Arch_1089 Arch_1089 Arch_1089 1226355 1227326 - transport system permease protein COGs: COG4606 ABC-type enterochelin transport system permease component~InterPro IPR000522~KEGG: bfa:Bfae_30530 ABC-type enterochelin transport system%2C permease component~PFAM: transport system permease protein~SPTR: C7MAS7 ABC-type enterochelin transport system%2C permease component~PFAM: FecCD transport family gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1089 Arch_1090 Arch_1090 Arch_1090 1227386 1228408 - periplasmic binding protein COGs: COG4607 ABC-type enterochelin transport system periplasmic component~InterPro IPR002491~KEGG: mlu:Mlut_16600 ABC-type enterochelin transport system%2C periplasmic component~PFAM: periplasmic binding protein~SPTR: C5CC07 ABC-type enterochelin transport system%2C periplasmic component~PFAM: Periplasmic binding protein gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1090 Arch_1091 Arch_1091 Arch_1091 1228553 1229527 - thiamine-monophosphate kinase COGs: COG0611 Thiamine monophosphate kinase~InterPro IPR016188:IPR010918:IPR006283:IPR000728~KEGG: xce:Xcel_2283 thiamine-monophosphate kinase~PFAM: AIR synthase related protein%3B AIR synthase related protein domain protein~PRIAM: Thiamine-phosphate kinase~SPTR: D1BV62 Thiamine-monophosphate kinase~TIGRFAM: thiamine-monophosphate kinase~PFAM: AIR synthase related protein%2C N-terminal domain%3B AIR synthase related protein%2C C-terminal domain~TIGRFAM: thiamine-monophosphate kinase gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1091 Arch_1092 Arch_1092 Arch_1092 1229537 1230655 - D-alanine/D-alanine ligase COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein~InterProIPR016185:IPR005905:IPR011761:IPR017964:IPR 000291:IPR013817:IPR013816:IPR011127:IPR011095~KEGG: xce:Xcel_2285 D-alanine/D-alanine ligase~PFAM: D-alanine--D-alanine ligase domain protein~PRIAM: D-alanine--D-alanine ligase~SPTR: D0WNE0 D-alanine--D-alanine ligase~TIGRFAM: D-alanine/D-alanine ligase~PFAM: D-ala D-ala ligase C-terminus%3B D-ala D-ala ligase N-terminus~TIGRFAM: D-alanine--D-alanine ligase gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1092 Arch_1093 Arch_1093 Arch_1093 1230726 1231541 - phospholipid/glycerol acyltransferase COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase~InterPro IPR002123~KEGG: art:Arth_2516 phospholipid/glycerol acyltransferase~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase~SPTR: D0WNE3 1-acylglycerol-3-phosphate O-acyltransferase%2C putayive~PFAM: Acyltransferase~TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1093 Arch_1094 Arch_1094 Arch_1094 1231561 1232883 - UDP-N-acetylglucosamine1-carboxyvinyltransferase COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase~InterPro IPR013792:IPR005750:IPR001986~KEGG: xce:Xcel_2294 UDP-N-acetylglucosamine1-carboxyvinyltransferase~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~SPTR: D0WNE4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase~TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1094 Arch_1095 Arch_1095 Arch_1095 1233076 1233807 + transcriptional regulator%2C IclR family COGs: COG1414 Transcriptional regulator~InterPro IPR005471:IPR014757~KEGG: xce:Xcel_2358 transcriptional regulator%2C IclR family~PFAM: Transcriptional regulator IclR %3B regulatory protein IclR~SMART: regulatory protein IclR~SPTR: D1BVQ5 Transcriptional regulator%2C IclR family~manually curated~PFAM: IclR helix-turn-helix domain%3B Bacterial transcriptional regulator gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1095 Arch_1096 Arch_1096 Arch_1096 1233817 1234950 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: sco:SCO2132 glycosyl transferase~PFAM: glycosyl transferase group 1~SPTR: D0WNF3 Glycosyl transferase~PFAM: Glycosyl transferases group 1 gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1096 Arch_1097 Arch_1097 Arch_1097 1235003 1237012 + Peptidyl-dipeptidase Dcp COGs: COG0339 Zn-dependent oligopeptidase~InterPro IPR001567~KEGG: bcv:Bcav_2254 peptidyl-dipeptidase DCP~PFAM: peptidase M3A and M3B thimet/oligopeptidase F~PRIAM: Peptidyl-dipeptidase Dcp~SPTR: C7SZ49 Peptidyl-dipeptidase~PFAM: Peptidase family M3 gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1097 Arch_1098 Arch_1098 Arch_1098 1237114 1237593 - hypothetical protein KEGG: CaJ7_0142%3B hypothetical protein~SPTR: C7SZ48 Putative uncharacterized protein gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1098 Arch_1099 Arch_1099 Arch_1099 1237695 1238651 - Phospholipase D InterPro IPR016674~KEGG: hypothetical protein~PRIAM: Phospholipase D~SPTR: C7SZ47 Phospholipase D gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1099 Arch_1100 Arch_1100 Arch_1100 1239515 1241020 - glutamyl-tRNA synthetase COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase~InterProIPR008925:IPR004527:IPR014729:IPR020061:IPR 020751:IPR020058:IPR020060~KEGG: krh:KRH_10280 glutamyl-tRNA synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain~SPTR: C7SZ46 Glutamyl tRNA synthase~TIGRFAM: glutamyl-tRNA synthetase~PFAM: tRNA synthetases class I (E and Q)%2C catalytic domain~TIGRFAM: glutamyl-tRNA synthetase%2C bacterial family gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1100 Arch_1101 Arch_1101 Arch_1101 1241046 1241816 - fumarylacetoacetate (FAA) hydrolase COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway)~InterPro IPR011234:IPR002529~KEGG: bcv:Bcav_1564 5-oxopent-3-ene-1%2C2%2C5-tricarboxylatedecarboxylas E~PFAM: fumarylacetoacetate (FAA) hydrolase~SPTR: C5C3C1 5-oxopent-3-ene-1%2C2%2C5-tricarboxylatedecarboxylas e~PFAM: Domain of unknown function (DUF2437)%3B Fumarylacetoacetate (FAA) hydrolase family gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1101 Arch_1102 Arch_1102 Arch_1102 1241844 1242821 + conserved hypothetical protein KEGG: bcv:Bcav_1559 hypothetical protein~SPTR: C1RFW2 Putative uncharacterized protein gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1102 Arch_1103 Arch_1103 Arch_1103 1242825 1243136 + protein of unknown function DUF77 COGs: COG0011 conserved hypothetical protein~InterPro IPR016198:IPR002767~KEGG: cms:CMS_2065 hypothetical protein~PFAM: protein of unknown function DUF77~SPTR: A4AK94 Putative uncharacterized protein~PFAM: Domain of unknown function DUF77~TIGRFAM: conserved hypothetical protein TIGR00106 gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1103 Arch_1104 Arch_1104 Arch_1104 1243144 1243810 + pseudogene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1104 Arch_1105 Arch_1105 Arch_1105 1243914 1246967 - LPXTG-motif cell wall anchor domain protein InterPro IPR008970:IPR019931:IPR003368:IPR008454~KEGG: cjk:jk0461 putative surface-anchored collagen-binding protein~PFAM: Cna B domain protein%3B Polymorphic membrane protein Chlamydia~SPTR: Q4JX39 Putative surface-anchored collagen-binding protein~TIGRFAM: LPXTG-motif cell wall anchor domain protein~manually curated~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1105 Arch_1106 Arch_1106 Arch_1106 1247456 1247935 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen COGs: COG1225 Peroxiredoxin~InterPro IPR012336:IPR017936:IPR012335:IPR000866~KEGG: bcv:Bcav_2672 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen~PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen~SPTR: D0WNI0 Bacterioferritin comigratory protein~PFAM: AhpC/TSA family gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1106 Arch_1107 Arch_1107 Arch_1107 1247972 1248286 - spermidine synthase KEGG: sfu:Sfum_2880 spermidine synthase~SPTR: A0LMA5 Spermidine synthase with an N-terminal membrane domain-like gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1107 Arch_1108 Arch_1108 Arch_1108 1248400 1248930 + conserved hypothetical protein KEGG: bcv:Bcav_2729 hypothetical protein~SPTR: D0WNI1 Putative uncharacterized protein gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1108 Arch_1109 Arch_1109 Arch_1109 1248910 1249539 - non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family COGs: COG0127 Xanthosine triphosphate pyrophosphatase~InterPro IPR002637~KEGG: bcv:Bcav_2733 non-canonical purine NTP pyrophosphatase%2C RdgB/HAM1 family~PFAM: Ham1 family protein~SPTR: C5BY78 Nucleoside-triphosphatase~TIGRFAM: non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family~PFAM: Ham1 family~TIGRFAM: non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1109 Arch_1110 Arch_1110 Arch_1110 1249551 1250291 - ribonuclease PH COGs: COG0689 RNase PH~InterProIPR020568:IPR015847:IPR002381:IPR018336:IPR 001247~KEGG: bcv:Bcav_2734 ribonuclease PH~PFAM: 3' exoribonuclease%3B Exoribonuclease%2C phosphorolytic domain 2~PRIAM: tRNA nucleotidyltransferase~SPTR: C0W2H9 Ribonuclease PH~TIGRFAM: ribonuclease PH~PFAM: 3' exoribonuclease family%2C domain 1%3B 3' exoribonuclease family%2C domain 2~TIGRFAM: ribonuclease PH gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1110 Arch_1111 Arch_1111 Arch_1111 1250330 1251526 - filamentation induced by cAMP protein Fic COGs: COG3177 conserved hypothetical protein~InterPro IPR003812~KEGG: cgt:cgR_0191 hypothetical protein~PFAM: filamentation induced by cAMP protein Fic~SPTR: A4QAA7 Putative uncharacterized protein~PFAM: Fic/DOC family gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1111 Arch_1112 Arch_1112 Arch_1112 1251671 1252471 - beta-lactamase domain protein COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III~KEGG: bcv:Bcav_2736 beta-lactamase domain protein~SPTR: D0WNI4 Metal-dependent hydrolase of the beta-lactamase superfamily III~PFAM: Metallo-beta-lactamase superfamily gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1112 Arch_1113 Arch_1113 Arch_1113 1252484 1253332 - glutamate racemase COGs: COG0796 Glutamate racemase~InterPro IPR001920:IPR004391:IPR018187:IPR015942~KEGG: jde:Jden_0885 glutamate racemase~PFAM: Asp/Glu/hydantoin racemase~PRIAM: Glutamate racemase~SPTR: C7R2H6 Glutamate racemase~TIGRFAM: glutamate racemase~PFAM: Asp/Glu/Hydantoin racemase~TIGRFAM: glutamate racemase gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1113 Arch_1114 Arch_1114 Arch_1114 1253343 1254050 - Domain of unknown function DUF2017 InterPro IPR018561~KEGG: bcv:Bcav_2740 hypothetical protein~PFAM: Domain of unknown function DUF2017~SPTR: D0WNI6 Putative uncharacterized protein~PFAM: Domain of unknown function (DUF2017) gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1114 Arch_1115 Arch_1115 Arch_1115 1254051 1254353 - ATP-dependent Clp protease adaptor protein ClpS COGs: COG2127 conserved hypothetical protein~InterPro IPR014719:IPR003769~KEGG: sco:SCO2916 ATP-dependent Clp protease adaptor protein ClpS~PFAM: ATP-dependent Clp protease adaptor protein ClpS~SPTR: C4DNG9 Uncharacterized conserved protein%2C COG2127~PFAM: ATP-dependent Clp protease adaptor protein ClpS gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1115 Arch_1116 Arch_1116 Arch_1116 1254440 1255792 + nicotinate phosphoribosyltransferase COGs: COG1488 Nicotinic acid phosphoribosyltransferase~InterPro IPR006405:IPR007229:IPR015977~KEGG: bcv:Bcav_2742 nicotinate phosphoribosyltransferase~PFAM: Nicotinate phosphoribosyltransferase-like~PRIAM: Nicotinate phosphoribosyltransferase~SPTR: D0WNI9 Putative nicotinate phosphoribosyltransferase~TIGRFAM: nicotinate phosphoribosyltransferase~manually curated~PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family~TIGRFAM: putative nicotinate phosphoribosyltransferase gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1116 Arch_1117 Arch_1117 Arch_1117 1255937 1257724 - type III restriction protein res subunit COGs: COG1061 DNA or RNA helicase of superfamily II~InterPro IPR014021:IPR014001:IPR006935~KEGG: art:Arth_2588 type III restriction enzyme%2C res subunit~PFAM: type III restriction protein res subunit~SMART: DEAD-like helicase~SPTR: D0WNJ0 Putative DNA or RNA helicase of superfamily II~PFAM: Type III restriction enzyme%2C res subunit gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1117 Arch_1118 Arch_1118 Arch_1118 1257721 1258077 - hypothetical protein KEGG: bcv:Bcav_2744 hypothetical protein~SPTR: D0WNJ1 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3039) gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1118 Arch_1119 Arch_1119 Arch_1119 1258289 1258570 - histone family protein DNA-binding protein COGs: COG0776 Bacterial nucleoid DNA-binding protein~InterPro IPR010992:IPR000119~KEGG: bcv:Bcav_2752 histone family protein DNA-binding protein~PFAM: histone family protein DNA-binding protein~SMART: histone family protein DNA-binding protein~SPTR: D0WNJ5 DNA-binding protein HU~PFAM: Bacterial DNA-binding protein gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1119 Arch_1120 Arch_1120 Arch_1120 1258761 1260329 - YidE/YbjL duplication COGs: COG2985 permease~InterPro IPR016040:IPR006512:IPR006037:IPR017871~KEGG: bfa:Bfae_01390 predicted permease~PFAM: YidE/YbjL duplication domain protein%3B TrkA-C domain protein~SPTR: D0YRM3 YidE/YbjL duplication~TIGRFAM: YidE/YbjL duplication~PFAM: Predicted Permease Membrane Region%3B TrkA-C domain~TIGRFAM: YidE/YbjL duplication gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1120 Arch_1121 Arch_1121 Arch_1121 1260418 1261692 + putative esterase COGs: COG0627 esterase~InterPro IPR000801~KEGG: cgt:cgR_1064 hypothetical protein~PFAM: putative esterase~SPTR: C2KS46 Esterase~PFAM: Putative esterase gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1121 Arch_1122 Arch_1122 Arch_1122 1261780 1262499 - dihydroxyacetone kinase%2C phosphotransfer subunit COGs: COG3412 conserved hypothetical protein~InterProIPR000032:IPR004701:IPR012844:IPR005698:IPR 001020~KEGG: ecm:EcSMS35_4856 phosphoenolpyruvate-protein phosphotransferase PtnE~PFAM: PTS system fructose subfamily IIA component%3B phosphoryl transfer system HPr~SPTR: D0YPG5 PTS-dependent dihydroxyacetone kinase%2C DhaM subunit~TIGRFAM: dihydroxyacetone kinase%2C phosphotransfer subunit%3B phosphocarrier%2C HPr family~PFAM: PTS system fructose IIA component%3B PTS HPr component phosphorylation site~TIGRFAM: dihydroxyacetone kinase%2C phosphotransfer subunit%3B Phosphotransferase System HPr (HPr) Family gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1122 Arch_1123 Arch_1123 Arch_1123 1262496 1264238 - dihydroxyacetone kinase%2C DhaK subunit COGs: COG2376 Dihydroxyacetone kinase~InterPro IPR004007:IPR012736:IPR012737:IPR004006~KEGG: msm:MSMEG_2123 dihydroxyacetone kinase%2C DhaK subunit~PFAM: Dak kinase%3B Dak phosphatase~PRIAM: Glycerone kinase~SPTR: A0QU93 Dihydroxyacetone kinase%2C DhaK subunit~TIGRFAM: dihydroxyacetone kinase%2C DhaK subunit%3B dihydroxyacetone kinase%2C L subunit~PFAM: DAK2 domain%3B Dak1 domain~TIGRFAM: dihydroxyacetone kinase%2C ATP-dependent%3B dihydroxyacetone kinase%2C DhaK subunit%3B dihydroxyacetone kinase%2C phosphoprotein-dependent%2C L subunit gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1123 Arch_1124 Arch_1124 Arch_1124 1264445 1265575 + protein of unknown function UPF0118 COGs: COG0628 permease~InterPro IPR002549~KEGG: bcv:Bcav_2286 protein of unknown function UPF0118~PFAM: protein of unknown function UPF0118~SPTR: C5BVF0 Putative uncharacterized protein~PFAM: Domain of unknown function DUF20 gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1124 Arch_1125 Arch_1125 Arch_1125 1265576 1266391 - NAD+ synthetase COGs: COG0171 NAD synthase~InterPro IPR003694:IPR014729~KEGG: aau:AAur_0519 NAD synthetase~PFAM: NAD synthase~SPTR: A1R265 NH(3)-dependent NAD(+) synthetase~TIGRFAM: NAD+ synthetase~PFAM: NAD synthase~TIGRFAM: NAD+ synthetase gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1125 Arch_1126 Arch_1126 Arch_1126 1266556 1269654 + hypothetical protein InterPro IPR006162~KEGG: cjk:jk1856 putative surface-anchored protein~SPTR: Q4JT22 Putative surface-anchored protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1126 Arch_1127 Arch_1127 Arch_1127 1269706 1270677 - ABC transporter related protein COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components~InterPro IPR003439:IPR017871:IPR003593~KEGG: pct:PC1_1544 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C6DDX5 ABC transporter related~PFAM: ABC transporter gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1127 Arch_1128 Arch_1128 Arch_1128 1270674 1273088 - ABC-type Fe3+ transport system periplasmic component COGs: COG1840 ABC-type Fe3+ transport system periplasmic component~KEGG: cdi:DIP0284 ABC transporter~SPTR: Q6NJV9 Putative ABC-transport system iron-binding secreted protein gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1128 Arch_1129 Arch_1129 Arch_1129 1273382 1274770 - major facilitator superfamily MFS_1 COGs: COG2271 Sugar phosphate permease~InterPro IPR016196:IPR005829:IPR000849:IPR011701~KEGG: ckp:ckrop_0413 glycerol-3-phosphate transporter~PFAM: major facilitator superfamily MFS_1~SPTR: C4LH87 Glycerol-3-phosphate transporter~PFAM: Major Facilitator Superfamily~TIGRFAM: glycerol-3-phosphate transporter%3B phosphoglycerate transporter family protein gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1129 Arch_1130 Arch_1130 Arch_1130 1274942 1275625 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR011006:IPR001789:IPR000463:IPR001867~KEGG: xce:Xcel_2992 two component transcriptional regulator%2C winged helix family~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver~SPTR: D0YTJ0 Transcriptional regulatory protein ResD~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1130 Arch_1131 Arch_1131 Arch_1131 1275622 1276422 - histidine kinase COGs: COG2205 Osmosensitive K+ channel histidine kinase~InterProIPR003594:IPR009082:IPR005467:IPR003661:IPR 004358~KEGG: xce:Xcel_2991 histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SPTR: D1BZA0 Histidine kinase~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1131 Arch_1132 Arch_1132 Arch_1132 1276427 1277380 - ferrochelatase COGs: COG0276 Protoheme ferro-lyase (ferrochelatase)~InterPro IPR001015~KEGG: lla:L0194 ferrochelatase~PFAM: ferrochelatase~PRIAM: Ferrochelatase~SPTR: Q9CFB4 Ferrochelatase~TIGRFAM: ferrochelatase~manually curated~PFAM: Ferrochelatase~TIGRFAM: ferrochelatase gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1132 Arch_1133 Arch_1133 Arch_1133 1277522 1277656 + hypothetical protein gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1133 Arch_1134 Arch_1134 Arch_1134 1277802 1278473 + conserved hypothetical protein COGs: COG1738 conserved hypothetical protein~InterPro IPR003744:IPR010916~KEGG: ach:Achl_0725 hypothetical protein~PFAM: protein of unknown function DUF165~SPTR: B8HC12 Putative uncharacterized protein~TIGRFAM: conserved hypothetical protein~PFAM: Uncharacterized ACR%2C YhhQ family COG1738~TIGRFAM: conserved hypothetical integral membrane protein gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1134 Arch_1135 Arch_1135 Arch_1135 1278470 1279156 - nitroreductase COGs: COG0778 Nitroreductase~InterPro IPR000415~KEGG: abo:ABO_1697 nitrobenzoate reductase%2C putative~PFAM: nitroreductase~SPTR: A7BEP3 Putative uncharacterized protein~manually curated~PFAM: Nitroreductase family gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1135 Arch_1136 Arch_1136 Arch_1136 1279204 1280244 + peptidase U61 LD-carboxypeptidase A COGs: COG1619 conserved hypothetical protein~InterPro IPR003507~KEGG: xce:Xcel_3337 peptidase U61 LD-carboxypeptidase A~PFAM: peptidase U61 LD-carboxypeptidase A~SPTR: D1BRS1 Peptidase U61 LD-carboxypeptidase A~PFAM: LD-carboxypeptidase gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1136 Arch_1137 Arch_1137 Arch_1137 1280383 1280949 + hypothetical protein KEGG: cpy:Cphy_0999 hypothetical protein~SPTR: D0WRJ8 Putative uncharacterized protein gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1137 Arch_1138 Arch_1138 Arch_1138 1281074 1281211 - hypothetical protein KEGG: similar to erythrocyte membrane-associated giant protein antigen 332~SPTR: C6RAU9 Putative secreted protein gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1138 Arch_1139 Arch_1139 Arch_1139 1281291 1281812 - hypothetical protein KEGG: bra:BRADO3971 hypothetical protein~SPTR: A4YV00 Putative uncharacterized protein gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1139 Arch_1140 Arch_1140 Arch_1140 1281980 1282612 - SNO glutamine amidotransferase COGs: COG0311 glutamine amidotransferase involved in pyridoxine biosynthesis~InterPro IPR002161~KEGG: dsy:DSY4245 glutamine amidotransferase subunit PdxT~PFAM: SNO glutamine amidotransferase~SPTR: D0WI52 Glutamine amidotransferase subunit PdxT~PFAM: SNO glutamine amidotransferase family gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1140 Arch_1141 Arch_1141 Arch_1141 1282617 1283495 - pyridoxine biosynthesis protein COGs: COG0214 Pyridoxine biosynthesis enzyme~InterPro IPR011060:IPR001852~KEGG: ccu:Ccur_10800 pyridoxal phosphate synthase YaaD subunit~PFAM: Vitamin B6 biosynthesis protein~SPTR: B0G7V9 Putative uncharacterized protein~TIGRFAM: pyridoxine biosynthesis protein~PFAM: SOR/SNZ family~TIGRFAM: pyridoxine biosynthesis protein gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1141 Arch_1142 Arch_1142 Arch_1142 1283748 1284395 + metal dependent phosphohydrolase COGs: COG1418 HD superfamily hydrolase~InterPro IPR003607:IPR006674~KEGG: lsa:LSA1145 putative metal-dependent phosphohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain~SMART: metal-dependent phosphohydrolase HD region~SPTR: Q38WI6 Putative metal-dependent phosphohydrolase~PFAM: HD domain gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1142 Arch_1143 Arch_1143 Arch_1143 1284367 1285236 - ABC-3 protein COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components~InterPro IPR001626~KEGG: rer:RER_59750 manganese ABC transporter permease protein~PFAM: ABC-3 protein~SPTR: C0VYA2 Iron ABC superfamily ATP binding cassette transporter%2C membrane protein~PFAM: ABC 3 transport family gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1143 Arch_1144 Arch_1144 Arch_1144 1285233 1285976 - ABC transporter related protein COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component~InterPro IPR003439:IPR017871:IPR003593~KEGG: rop:ROP_70560 manganese ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C0VYA1 ABC superfamily ATP binding cassette transporter%2C ABC protein~PFAM: ABC transporter gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1144 Arch_1145 Arch_1145 Arch_1145 1286216 1287178 - periplasmic solute binding protein COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin~InterPro IPR006127:IPR006129:IPR006128~KEGG: rop:ROP_70570 manganese ABC transporter manganese-binding protein~PFAM: periplasmic solute binding protein~SPTR: C0VYA0 Metal cation ABC superfamily ATP binding cassette transporter%2C binding protein~PFAM: Periplasmic solute binding protein family gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1145 Arch_1146 Arch_1146 Arch_1146 1287316 1288467 + hypothetical protein KEGG: apr:Apre_0119 hypothetical protein~SPTR: C7RFB0 Putative membrane protein gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1146 Arch_1147 Arch_1147 Arch_1147 1288467 1289720 + conserved hypothetical protein KEGG: cur:cur_1838 hypothetical protein~SPTR: D0WP75 Putative integral membrane protein gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1147 Arch_1148 Arch_1148 Arch_1148 1289801 1291162 + endonuclease/exonuclease/phosphatase family protein KEGG: bfa:Bfae_06470 endonuclease/exonuclease/phosphatase family protein~SPTR: A7B9D7 Putative uncharacterized protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1148 Arch_1149 Arch_1149 Arch_1149 1291336 1291716 + transcriptional regulator%2C GntR family COGs: COG1725 transcriptional regulator protein~InterPro IPR000524:IPR011991~KEGG: apr:Apre_0169 transcriptional regulator%2C GntR family~PFAM: regulatory protein GntR HTH~SMART: regulatory protein GntR HTH~SPTR: C0W8Y6 GntR family transcriptional regulator~PFAM: Bacterial regulatory proteins%2C gntR family gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1149 Arch_1150 Arch_1150 Arch_1150 1291709 1292413 + ABC transporter related protein COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: smu:SMU.1194 putative ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C0W8Y7 ABC superfamily ATP binding cassette transporter%2C ABC protein~PFAM: ABC transporter gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1150 Arch_1151 Arch_1151 Arch_1151 1292410 1293222 + hypothetical protein KEGG: acl:ACL_0342 ABC-type transport system%2C permease component%2C putative~SPTR: A7BEJ1 Putative uncharacterized protein gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1151 Arch_1152 Arch_1152 Arch_1152 1293326 1294075 - ABC transporter related protein COGs: COG1126 ABC-type polar amino acid transport system ATPase component~InterPro IPR003439:IPR017871:IPR003593~KEGG: rmu:RMDY18_18540 ABC-type polar amino acid transport system%2C ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C6R5X7 Glutamine transport ATP-binding protein GlnQ~PFAM: ABC transporter gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1152 Arch_1153 Arch_1153 Arch_1153 1294075 1294743 - polar amino acid ABC transporter%2C inner membrane subunit COGs: COG0765 ABC-type amino acid transport system permease component~InterPro IPR010065:IPR000515~KEGG: krh:KRH_01090 putative amino acid ABC transporter permease protein~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: B2GK57 Putative amino acid ABC transporter permease protein~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: amine acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine family gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1153 Arch_1154 Arch_1154 Arch_1154 1294740 1295552 - extracellular solute-binding protein family 3 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain~InterPro IPR018313:IPR001638~KEGG: rmu:RMDY18_18580 ABC-type amino acid transport/signal transduction system%2C periplasmic component~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3~SPTR: C6R5X5 L-cystine-binding protein TcyA~PFAM: Bacterial extracellular solute-binding proteins%2C family 3 gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1154 Arch_1155 Arch_1155 Arch_1155 1295768 1296124 + hypothetical protein InterPro IPR003731~KEGG: nca:Noca_2700 hypothetical protein~SPTR: C2BVE9 Putative uncharacterized protein~PFAM: Dinitrogenase iron-molybdenum cofactor gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1155 Arch_1156 Arch_1156 Arch_1156 1296127 1297425 - branched-chain amino acid transport system II carrier protein COGs: COG1114 Branched-chain amino acid permease~InterPro IPR004685~KEGG: cgb:cg2537 branched-chain amino acid uptake carrier~PFAM: branched-chain amino acid transport system II carrier protein~SPTR: C0W213 LIVCS family branched chain amino acid:cation symporter~TIGRFAM: branched-chain amino acid transport system II carrier protein~PFAM: Branched-chain amino acid transport protein~TIGRFAM: branched-chain amino acid uptake carrier gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1156 Arch_1157 Arch_1157 Arch_1157 1297422 1298738 - branched-chain amino acid transport system II carrier protein COGs: COG1114 Branched-chain amino acid permease~InterPro IPR004685~KEGG: car:cauri_1823 branched-chain amino acid uptake carrier~PFAM: branched-chain amino acid transport system II carrier protein~SPTR: C0W213 LIVCS family branched chain amino acid:cation symporter~TIGRFAM: branched-chain amino acid transport system II carrier protein~PFAM: Branched-chain amino acid transport protein~TIGRFAM: branched-chain amino acid uptake carrier gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1157 Arch_1158 Arch_1158 Arch_1158 1298809 1300164 - branched-chain amino acid transport system II carrier protein COGs: COG1114 Branched-chain amino acid permease~InterPro IPR004685~KEGG: cdi:DIP1737 branched-chain amino acid ABC transport system membrane protein~PFAM: branched-chain amino acid transport system II carrier protein~SPTR: C0W213 LIVCS family branched chain amino acid:cation symporter~TIGRFAM: branched-chain amino acid transport system II carrier protein~PFAM: Branched-chain amino acid transport protein~TIGRFAM: branched-chain amino acid uptake carrier gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1158 Arch_1159 Arch_1159 Arch_1159 1300451 1301014 + DNA-3-methyladenine glycosylase I COGs: COG2818 3-methyladenine DNA glycosylase~InterPro IPR011257:IPR005019~KEGG: blj:BLD_0730 3-methyladenine DNA glycosylase~PFAM: methyladenine glycosylase~PRIAM: DNA-3-methyladenine glycosylase I~SPTR: B3DSQ7 3-methyladenine DNA glycosylase~PFAM: Methyladenine glycosylase~TIGRFAM: DNA-3-methyladenine glycosylase I gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1159 Arch_1160 Arch_1160 Arch_1160 1301273 1301968 + MgtC/SapB transporter COGs: COG1285 membrane protein~InterPro IPR003416~KEGG: bcv:Bcav_0823 MgtC/SapB transporter~PFAM: MgtC/SapB transporter~SPTR: D0WQ67 MgtC/SapB transporter~PFAM: MgtC family gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1160 Arch_1161 Arch_1161 Arch_1161 1301931 1302812 + hypothetical protein KEGG: fra:Francci3_0231 oxidoreductase FAD/NAD(P)-binding~SPTR: Q2JGH2 Oxidoreductase FAD/NAD(P)-binding gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1161 Arch_1162 Arch_1162 Arch_1162 1302978 1303415 + FMN-binding domain protein InterPro IPR007329~KEGG: fra:Francci3_0232 FMN-binding~PFAM: FMN-binding domain protein~SPTR: C5NUC0 FMN-binding~PFAM: FMN-binding domain gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1162 Arch_1163 Arch_1163 Arch_1163 1303416 1304258 + ApbE family lipoprotein COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis~InterPro IPR003374~KEGG: saq:Sare_1128 hypothetical protein~PFAM: ApbE family lipoprotein~SPTR: A8M5G2 Putative uncharacterized protein~PFAM: ApbE family gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1163 Arch_1164 Arch_1164 Arch_1164 1304330 1305466 + galactokinase COGs: COG0153 Galactokinase~InterProIPR020568:IPR000705:IPR019741:IPR006203:IPR 014721:IPR019539:IPR006204:IPR013750:IPR006206~KEGG: nca:Noca_2607 galactokinase~PFAM: Galactokinase galactose-binding domain%3B GHMP kinase%3B GHMP kinase domain protein~SPTR: A1SJX6 Galactokinase~TIGRFAM: galactokinase~PFAM: Galactokinase galactose-binding signature%3B GHMP kinases C terminal%3B GHMP kinases N terminal domain~TIGRFAM: galactokinase gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1164 Arch_1165 Arch_1165 Arch_1165 1305463 1305945 - hypothetical protein KEGG: rca:Rcas_0569 winged helix family two component response transcriptional regulator~SPTR: A7NGV1 Putative two component transcriptional regulator%2C winged helix family gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1165 Arch_1166 Arch_1166 Arch_1166 1305923 1306138 - hypothetical protein KEGG: kra:Krad_3287 beta-lactamase~SPTR: Q4S4L8 Chromosome 2 SCAF14738%2C whole genome shotgun sequence. (Fragment) gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1166 Arch_1167 Arch_1167 Arch_1167 1306145 1307161 - UDP-glucose 4-epimerase COGs: COG1087 UDP-glucose 4-epimerase~InterPro IPR016040:IPR005886:IPR001509:IPR008089~KEGG: blj:BLD_1768 UDP-glucose 4-epimerase~PFAM: NAD-dependent epimerase/dehydratase~SPTR: B9TTH2 GalE1~TIGRFAM: UDP-glucose 4-epimerase~PFAM: NAD dependent epimerase/dehydratase family~TIGRFAM: UDP-glucose-4-epimerase gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1167 Arch_1168 Arch_1168 Arch_1168 1307193 1308668 - UDP-glucose--hexose-1-phosphateuridylyl transferase COGs: COG4468 Galactose-1-phosphate uridyltransferase~InterPro IPR005849:IPR005850~KEGG: blo:BL1643 galactose-1-phosphate uridylyltransferase~PFAM: galactose-1-phosphate uridyl transferase domain protein~PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase~SPTR: Q8G3W0 Galactose-1-phosphate uridylyltransferase~PFAM: Galactose-1-phosphate uridyl transferase%2C C-terminal domain%3B Galactose-1-phosphate uridyl transferase%2C N-terminal domain~TIGRFAM: galactose-1-phosphate uridylyltransferase%2C family 2 gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1168 Arch_1169 Arch_1169 Arch_1169 1308682 1308780 - hypothetical protein gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1169 Arch_1170 Arch_1170 Arch_1170 1308898 1309086 + pseudogene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1170 Arch_1171 Arch_1171 Arch_1171 1309053 1310492 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase COGs: COG1252 NADH dehydrogenase FAD-containing subunit~InterPro IPR013027~KEGG: fal:FRAAL1622 NADH dehydrogenase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~SPTR: C0W1D4 NADH dehydrogenase (NDH)~PFAM: Pyridine nucleotide-disulphide oxidoreductase gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1171 Arch_1172 Arch_1172 Arch_1172 1310786 1311367 + transcriptional regulator%2C TetR family InterPro IPR009057:IPR001647:IPR012287~KEGG: blj:BLD_1290 AcrR-type transcriptional regulator~PFAM: regulatory protein TetR~SPTR: Q8G6X9 Possible TetR-type transcriptional regulator~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1172 Arch_1173 Arch_1173 Arch_1173 1311380 1312411 + membrane protein KEGG: ele:Elen_1391 membrane protein~SPTR: C0BR54 Putative uncharacterized protein gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1173 Arch_1174 Arch_1174 Arch_1174 1312757 1313968 + argininosuccinate synthase COGs: COG0137 Argininosuccinate synthase~InterPro IPR001518:IPR018223:IPR014729~KEGG: cth:Cthe_0179 argininosuccinate synthase~PFAM: argininosuccinate synthase~PRIAM: Argininosuccinate synthase~SPTR: C7HG88 Argininosuccinate synthase~TIGRFAM: argininosuccinate synthase~PFAM: Arginosuccinate synthase~TIGRFAM: argininosuccinate synthase gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1174 Arch_1175 Arch_1175 Arch_1175 1313978 1315366 + argininosuccinate lyase COGs: COG0165 Argininosuccinate lyase~InterProIPR008948:IPR009049:IPR020557:IPR000362:IPR 003031~KEGG: drm:Dred_0278 argininosuccinate lyase~PFAM: fumarate lyase~SPTR: B0MQ53 Putative uncharacterized protein~TIGRFAM: argininosuccinate lyase~PFAM: Lyase~TIGRFAM: argininosuccinate lyase gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1175 Arch_1176 Arch_1176 Arch_1176 1315376 1315873 + GCN5-related N-acetyltransferase InterPro IPR016181:IPR000182~KEGG: car:cauri_0014 putative N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: C2CSR1 Acetyltransferase~PFAM: Acetyltransferase (GNAT) family gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1176 Arch_1177 Arch_1177 Arch_1177 1315984 1317423 - adenylosuccinate lyase COGs: COG0015 Adenylosuccinate lyase~InterProIPR008948:IPR004769:IPR020557:IPR000362:IPR 003031~KEGG: cth:Cthe_0741 adenylosuccinate lyase~PFAM: fumarate lyase~SPTR: C0ECV4 Putative uncharacterized protein~TIGRFAM: adenylosuccinate lyase~PFAM: Lyase%3B Adenylosuccinate lyase C-terminus~TIGRFAM: adenylosuccinate lyase gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1177 Arch_1178 Arch_1178 Arch_1178 1317446 1318741 - adenylosuccinate synthetase COGs: COG0104 Adenylosuccinate synthase~InterPro IPR001114~KEGG: pjd:Pjdr2_0612 adenylosuccinate synthetase~PFAM: adenylosuccinate synthetase~PRIAM: Adenylosuccinate synthase~SMART: adenylosuccinate synthetase~SPTR: B6FK20 Adenylosuccinate synthetase~TIGRFAM: adenylosuccinate synthetase~PFAM: Adenylosuccinate synthetase~TIGRFAM: adenylosuccinate synthase gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1178 Arch_1179 Arch_1179 Arch_1179 1318803 1320248 - IMP dehydrogenase family protein COGs: COG0516 IMP dehydrogenase/GMP reductase~InterProIPR005991:IPR018529:IPR000644:IPR013785:IPR 001093~KEGG: sco:SCO1461 inosine 5-monophosphate dehydrogenase~PFAM: IMP dehydrogenase/GMP reductase%3B CBS domain containing protein~PRIAM: IMP dehydrogenase~SMART: CBS domain containing protein~SPTR: C0W4C2 Possible IMP dehydrogenase~TIGRFAM: IMP dehydrogenase family protein~PFAM: CBS domain%3B IMP dehydrogenase / GMP reductase domain~TIGRFAM: inosine-5'-monophosphate dehydrogenase%3B IMP dehydrogenase family protein gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1179 Arch_1180 Arch_1180 Arch_1180 1320400 1321071 - transcriptional regulator%2C TetR family InterPro IPR009057:IPR001647:IPR012287~KEGG: cjk:jk0810 TetR family transcriptional regulator~PFAM: regulatory protein TetR~SPTR: C5VD50 Putative transcriptional regulator~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1180 Arch_1181 Arch_1181 Arch_1181 1321068 1322822 - ABC transporter related protein COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterProIPR011527:IPR003439:IPR017940:IPR017871:IPR 002345:IPR003593~KEGG: ckp:ckrop_1536 putative ABC transport system~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: A7BC13 Putative uncharacterized protein~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1181 Arch_1182 Arch_1182 Arch_1182 1322819 1324609 - ABC transporter related protein COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterProIPR011527:IPR003439:IPR017940:IPR017871:IPR 003593:IPR001140~KEGG: ele:Elen_1490 ABC transporter related~PFAM: ABC transporter related%3B ABC transporter transmembrane region~SMART: AAA ATPase~SPTR: C0E4Q8 Putative uncharacterized protein~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1182 Arch_1183 Arch_1183 Arch_1183 1324593 1326110 - ABC transporter related protein COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase~InterPro IPR003439:IPR017871:IPR003593~KEGG: ckp:ckrop_1533 ABC transport system%2C ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C4LKA7 ABC transport system%2C ATP-binding protein~PFAM: ABC transporter gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1183 Arch_1184 Arch_1184 Arch_1184 1326110 1326916 - cobalt transport protein InterPro IPR003339~KEGG: car:cauri_0787 putative ABC transport system%2C permease protein~PFAM: cobalt transport protein~SPTR: D0YS34 Putative ABC transporter associated permease~PFAM: Cobalt transport protein gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1184 Arch_1185 Arch_1185 Arch_1185 1326930 1327565 - conserved hypothetical protein InterPro IPR011733~KEGG: mpa:MAP3733c hypothetical protein~PFAM: Conserved hypothetical CHP02185 integral membrane family protein~SPTR: A7BC09 Putative uncharacterized protein~TIGRFAM: conserved hypothetical protein~PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep)~TIGRFAM: conserved hypothetical integral membrane protein TIGR02185 gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1185 Arch_1186 Arch_1186 Arch_1186 1327740 1328354 + hypothetical protein KEGG: hypothetical protein~SPTR: B7GA82 Predicted protein gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1186 Arch_1187 Arch_1187 Arch_1187 1328351 1329139 + transcriptional regulator%2C MerR family COGs: COG0789 transcriptional regulator protein~InterPro IPR009061:IPR000551:IPR015358:IPR012925~KEGG: cur:cur_0383 MerR family transcriptional regulator~PFAM: TipAS antibiotic-recognition domain protein%3B regulatory protein MerR%3B Transcription regulator MerR DNA binding~SMART: regulatory protein MerR~SPTR: B1VF04 Putative transcriptional regulator (MerR family)~PFAM: MerR family regulatory protein%3B MerR%2C DNA binding%3B TipAS antibiotic-recognition domain gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1187 Arch_1188 Arch_1188 Arch_1188 1329469 1329915 + hypothetical protein KEGG: mlu:Mlut_02560 hypothetical protein~SPTR: C2BN36 Putative uncharacterized protein gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1188 Arch_1189 Arch_1189 Arch_1189 1329922 1330119 + transcriptional regulator%2C XRE family COGs: COG1476 transcriptional regulator protein~InterPro IPR010982:IPR001387~KEGG: mlu:Mlut_02550 predicted transcriptional regulator~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein~SPTR: D0YR80 Transcriptional regulator~PFAM: Helix-turn-helix gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1189 Arch_1190 Arch_1190 Arch_1190 1330240 1330461 - hypothetical protein gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1190 Arch_1191 Arch_1191 Arch_1191 1330493 1330921 + hypothetical protein KEGG: lca:LSEI_1243 XRE family transcriptional regulator~SPTR: C0CY08 Putative uncharacterized protein gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1191 Arch_1192 Arch_1192 Arch_1192 1331051 1331888 + pseudogene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1192 Arch_1193 Arch_1193 Arch_1193 1332138 1333655 + peptidase U34 dipeptidase COGs: COG4690 Dipeptidase~InterPro IPR005322~KEGG: blt:Balat_0226 dipeptidase~PFAM: peptidase U34 dipeptidase~SPTR: C2BRD5 Dipeptidase~PFAM: Peptidase family C69 gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1193 Arch_1194 Arch_1194 Arch_1194 1334088 1334309 - conserved hypothetical protein KEGG: blt:Balat_0042 hypothetical protein~SPTR: D0WJK4 Toxin-antitoxin system%2C toxin component%2C RelE family gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1194 Arch_1195 Arch_1195 Arch_1195 1334453 1334734 + transposase IS3/IS911 family protein InterPro IPR002514~KEGG: kse:Ksed_22010 transposase~PFAM: transposase IS3/IS911 family protein~SPTR: C2BM30 ISMyma01 transposase~PFAM: Transposase gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1195 Arch_1196 Arch_1196 Arch_1196 1334788 1335609 + Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR012337:IPR001584~KEGG: kse:Ksed_22000 transposase~PFAM: Integrase catalytic region~SPTR: A7B9Y7 Putative uncharacterized protein~PFAM: Integrase core domain gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1196 Arch_1197 Arch_1197 Arch_1197 1335651 1335914 - addiction module antitoxin%2C RelB/DinJ family InterPro IPR007337~KEGG: blt:Balat_1584 hypothetical protein~PFAM: RelB antitoxin~SPTR: C6AG15 Putative uncharacterized protein~TIGRFAM: addiction module antitoxin%2C RelB/DinJ family~PFAM: RelB antitoxin~TIGRFAM: addiction module antitoxin%2C RelB/DinJ family gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1197 Arch_1198 Arch_1198 Arch_1198 1336541 1336832 + pseudogene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1198 Arch_1199 Arch_1199 Arch_1199 1336913 1337200 - hypothetical protein KEGG: hypothetical protein~SPTR: C2M2A7 Putative uncharacterized protein gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1199 Arch_1200 Arch_1200 Arch_1200 1337224 1337487 - hypothetical protein KEGG: etr:ETAE_1601 hypothetical protein~SPTR: D0Z7M3 Putative uncharacterized protein gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1200 Arch_1201 Arch_1201 Arch_1201 1337487 1337822 - hypothetical protein KEGG: cpf:CPF_1918 M50 family peptidase~SPTR: Q8XJT9 Putative uncharacterized protein CPE1664~manually curated gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1201 Arch_1202 Arch_1202 Arch_1202 1337819 1337977 - hypothetical protein KEGG: bfs:BF1081 hypothetical protein~SPTR: Q5LGC7 Putative uncharacterized protein gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1202 Arch_1203 Arch_1203 Arch_1203 1338096 1338360 - pseudogene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1203 Arch_1204 Arch_1204 Arch_1204 1338928 1339029 + hypothetical protein gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1204 Arch_1205 Arch_1205 Arch_1205 1339122 1340231 + Radical SAM domain protein COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)~InterPro IPR007197~KEGG: tte:TTE2358 Fe-S oxidoreductase~PFAM: Radical SAM domain protein~SPTR: C2GIA8 Radical SAM domain protein~PFAM: Radical SAM superfamily gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1205 Arch_1206 Arch_1206 Arch_1206 1340301 1341566 + major facilitator superfamily MFS_1 InterPro IPR016196:IPR011701~KEGG: bln:Blon_2418 major facilitator superfamily MFS_1~PFAM: major facilitator superfamily MFS_1~SPTR: B7GP77 Major facilitator superfamily MFS_1~PFAM: Major Facilitator Superfamily gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1206 Arch_1207 Arch_1207 Arch_1207 1341772 1342064 + pseudogene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1207 Arch_1208 Arch_1208 Arch_1208 1342096 1342989 + Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR012337:IPR001584~KEGG: cur:cur_1459 transposase for insertion sequence~PFAM: Integrase catalytic region~SPTR: B1VGV7 Transposase for insertion sequence~PFAM: Integrase core domain gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1208 Arch_1209 Arch_1209 Arch_1209 1343124 1343348 + Protein of unknown function DUF2283 InterPro IPR019270~KEGG: cmi:CMM_0214 hypothetical protein~PFAM: Protein of unknown function DUF2283~SPTR: A5CMF0 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF2283) gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1209 Arch_1210 Arch_1210 Arch_1210 1343472 1344477 + pseudogene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1210 Arch_1211 Arch_1211 Arch_1211 1344481 1344648 + pseudogene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1211 Arch_1212 Arch_1212 Arch_1212 1344657 1344857 + hypothetical protein SPTR: C2BV36 Putative uncharacterized protein gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1212 Arch_1213 Arch_1213 Arch_1213 1344888 1346134 + pseudogene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1213 Arch_1214 Arch_1214 Arch_1214 1346134 1347699 + Resolvase domain protein COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs~InterPro IPR006119:IPR011109~KEGG: spa:M6_Spy1124 site-specific recombinase~PFAM: Resolvase domain%3B Recombinase~SPTR: C2BV34 Site-specific recombinase~PFAM: Recombinase%3B Resolvase%2C N terminal domain gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1214 Arch_1216 Arch_1216 Arch_1216 1350060 1350821 - HAD-superfamily hydrolase%2C subfamily IIA COGs: COG0647 sugar phosphatase of the HAD superfamily~InterPro IPR006357:IPR005834~KEGG: jde:Jden_2424 HAD-superfamily hydrolase%2C subfamily IIA~PFAM: Haloacid dehalogenase domain protein hydrolase~SPTR: D0WLK8 Sugar phosphatase/hydrolase of the HAD family protein~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IIA~TIGRFAM: HAD-superfamily subfamily IIA hydrolase%2C TIGR01457%3B Haloacid Dehalogenase Superfamily Class (subfamily) IIA gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1216 Arch_1217 Arch_1217 Arch_1217 1350979 1351527 - SsrA-binding protein COGs: COG0691 tmRNA-binding protein~InterPro IPR000037:IPR020081~KEGG: bcv:Bcav_2766 SsrA-binding protein~PFAM: SmpB protein~SPTR: D0WNL4 SsrA-binding protein~TIGRFAM: SsrA-binding protein~PFAM: SmpB protein~TIGRFAM: SsrA-binding protein gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1217 Arch_1218 Arch_1218 Arch_1218 1351546 1352829 - Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR011055:IPR016047~KEGG: bcv:Bcav_2767 peptidase M23~PFAM: Peptidase M23~SPTR: D0WNL6 Putative M23 peptidase domain protein~PFAM: Peptidase family M23 gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1218 Arch_1219 Arch_1219 Arch_1219 1352832 1353746 - protein of unknown function DUF214 COGs: COG2177 Cell division protein~InterPro IPR003838~KEGG: jde:Jden_0865 cell division protein FtsX~PFAM: protein of unknown function DUF214~SPTR: D0WNL7 Putative cell division protein~PFAM: Predicted permease gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1219 Arch_1220 Arch_1220 Arch_1220 1353746 1354435 - cell division ATP-binding protein FtsE COGs: COG2884 ATPase involved in cell division~InterPro IPR005286:IPR003439:IPR017871:IPR003593~KEGG: bcv:Bcav_2769 cell division ATP-binding protein FtsE~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0WNL8 Cell division ATP-binding protein FtsE~TIGRFAM: cell division ATP-binding protein FtsE~PFAM: ABC transporter~TIGRFAM: cell division ATP-binding protein FtsE gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1220 Arch_1221 Arch_1221 Arch_1221 1354548 1355678 - peptide chain release factor 2 COGs: COG1186 Protein chain release factor B~InterPro IPR004374:IPR000352:IPR005139~KEGG: bcv:Bcav_2771 peptide chain release factor 2~PFAM: Class I peptide chain release factor%3B PCRF domain protein~SPTR: D0WNM0 Peptide chain release factor 2~TIGRFAM: peptide chain release factor 2~PFAM: PCRF domain%3B RF-1 domain~TIGRFAM: peptide chain release factor 2 gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1221 Arch_1222 Arch_1222 Arch_1222 1355694 1356110 - hypothetical protein KEGG: kra:Krad_3784 hypothetical protein~SPTR: A6WEK8 Putative uncharacterized protein gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1222 Arch_1223 Arch_1223 Arch_1223 1356107 1356535 - hypothetical protein KEGG: xce:Xcel_1028 TadE family protein~SPTR: D1BYY4 TadE family protein gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1223 Arch_1224 Arch_1224 Arch_1224 1356519 1356884 - TadE family protein KEGG: xce:Xcel_1029 TadE family protein~SPTR: A1R814 Putative TadE-like family protein gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1224 Arch_1225 Arch_1225 Arch_1225 1356881 1357090 - conserved hypothetical protein KEGG: kse:Ksed_10350 hypothetical protein~SPTR: A4AK55 Putative uncharacterized protein gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1225 Arch_1226 Arch_1226 Arch_1226 1357112 1357987 - Type II secretion system F domain protein InterPro IPR018076~KEGG: bcv:Bcav_2789 type II secretion system protein~PFAM: Type II secretion system F domain~SPTR: C5BYD4 Type II secretion system protein~PFAM: Bacterial type II secretion system protein F domain gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1226 Arch_1227 Arch_1227 Arch_1227 1357984 1358796 - Type II secretion system F domain protein COGs: COG4965 Flp pilus assembly protein TadB~InterPro IPR018076~KEGG: xce:Xcel_1032 type II secretion system protein~PFAM: Type II secretion system F domain~SPTR: D1BYY8 Type II secretion system protein~PFAM: Bacterial type II secretion system protein F domain gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1227 Arch_1228 Arch_1228 Arch_1228 1358772 1360025 - type II secretion system protein E COGs: COG4962 Flp pilus assembly protein ATPase CpaF~InterPro IPR001482~KEGG: fra:Francci3_0779 type II secretion system protein E~PFAM: type II secretion system protein E~SPTR: A3TG68 Putative type II/type IV pathway secretion protein~PFAM: Type II/IV secretion system protein gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1228 Arch_1229 Arch_1229 Arch_1229 1360194 1361213 + aminoglycoside phosphotransferase COGs: COG3173 aminoglycoside phosphotransferase~InterPro IPR011009:IPR002575~KEGG: bcv:Bcav_2900 aminoglycoside phosphotransferase~PFAM: aminoglycoside phosphotransferase~SPTR: D0WNM2 Putative phosphotransferase~PFAM: Phosphotransferase enzyme family gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1229 Arch_1230 Arch_1230 Arch_1230 1361261 1364731 - UvrD/REP helicase COGs: COG0210 Superfamily I DNA and RNA helicase~InterPro IPR014016:IPR014017:IPR000212~KEGG: jde:Jden_0712 UvrD/REP helicase~PFAM: UvrD/REP helicase~SPTR: D0WNM3 ATP-dependent DNA helicase~PFAM: UvrD/REP helicase gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1230 Arch_1231 Arch_1231 Arch_1231 1364731 1367865 - UvrD/REP helicase COGs: COG0210 Superfamily I DNA and RNA helicase~InterPro IPR014016:IPR014017:IPR000212~KEGG: jde:Jden_0711 UvrD/REP helicase~PFAM: UvrD/REP helicase~SPTR: D0WNM4 Helicase%2C UvrD/Rep family~PFAM: Domain of unknown function DUF83%3B UvrD/REP helicase gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1231 Arch_1232 Arch_1232 Arch_1232 1367986 1368900 + protein of unknown function DUF808 COGs: COG2354 conserved hypothetical protein~InterPro IPR008526~KEGG: mlu:Mlut_15650 hypothetical protein~PFAM: protein of unknown function DUF808~SPTR: C5CBD4 Uncharacterized conserved protein~PFAM: Protein of unknown function (DUF808) gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1232 Arch_1233 Arch_1233 Arch_1233 1368990 1369214 + conserved hypothetical protein KEGG: blt:Balat_1259 hypothetical protein~SPTR: D0WNM5 Putative ATP-binding protein~PFAM: Protein of unknown function (DUF3107) gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1233 Arch_1234 Arch_1234 Arch_1234 1369248 1370810 + DEAD/DEAH box helicase domain protein COGs: COG0513 Superfamily II DNA and RNA helicase~InterProIPR014021:IPR001650:IPR014014:IPR000629:IPR 014001:IPR011545~KEGG: bcv:Bcav_2906 DEAD/DEAH box helicase domain protein~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: D0WNN3 ATP-dependent RNA helicase DeaD~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1234 Arch_1235 Arch_1235 Arch_1235 1370883 1371506 - multiple antibiotic resistance (MarC)-related protein COGs: COG2095 Multiple antibiotic transporter~InterPro IPR002771~KEGG: cai:Caci_8100 multiple antibiotic resistance (MarC)-related protein~PFAM: multiple antibiotic resistance (MarC)-related protein~SPTR: D0YNY9 Membrane protein~PFAM: MarC family integral membrane protein~TIGRFAM: conserved hypothetical protein TIGR00427 gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1235 Arch_1236 Arch_1236 Arch_1236 1371506 1372342 - PHP domain protein COGs: COG0613 metal-dependent phosphoesterase (PHP family)~InterPro IPR016195:IPR003141:IPR004013~KEGG: jde:Jden_0704 PHP domain protein~PFAM: PHP domain protein~SMART: phosphoesterase PHP domain protein~SPTR: D0WNN5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase~PFAM: PHP domain gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1236 Arch_1237 Arch_1237 Arch_1237 1372434 1373942 + peptidase M24 COGs: COG0006 Xaa-Pro aminopeptidase~InterPro IPR000994:IPR001131:IPR007865~KEGG: bcv:Bcav_2910 peptidase M24~PFAM: peptidase M24%3B peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein~SPTR: D0WNN6 Xaa-Pro aminopeptidase I~PFAM: Aminopeptidase P%2C N-terminal domain%3B Metallopeptidase family M24 gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1237 Arch_1238 Arch_1238 Arch_1238 1373999 1375288 + MgtE intracellular region COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain)~InterPro IPR011002:IPR000644:IPR006668~KEGG: bcv:Bcav_2913 MgtE intracellular region~PFAM: MgtE intracellular region%3B CBS domain containing protein~SPTR: D0WNN7 Putative magnesium transporter MgtE~PFAM: MgtE intracellular N domain%3B CBS domain gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1238 Arch_1239 Arch_1239 Arch_1239 1375288 1375869 + protein of unknown function DUF1003 COGs: COG4420 membrane protein~InterPro IPR010406~KEGG: xce:Xcel_0765 protein of unknown function DUF1003~PFAM: protein of unknown function DUF1003~SPTR: C0W117 Integral membrane protein~PFAM: Protein of unknown function (DUF1003) gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1239 Arch_1240 Arch_1240 Arch_1240 1375875 1376999 + ATPase-like%2C ParA/MinD COGs: COG0489 ATPase involved in chromosome partitioning~InterPro IPR000808:IPR002744:IPR019591~KEGG: kse:Ksed_19390 ATPase involved in chromosome partitioning~PFAM: ATPase-like%2C ParA/MinD%3B protein of unknown function DUF59~SPTR: D0WNN9 Mrp protein~PFAM: ParA/MinD ATPase like%3B Domain of unknown function DUF59%3B ATPase MipZ gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1240 Arch_1241 Arch_1241 Arch_1241 1377018 1377647 + O-methyltransferase family 3 COGs: COG4122 O-methyltransferase~InterPro IPR002935~KEGG: bcv:Bcav_2922 O-methyltransferase family 3~PFAM: O-methyltransferase family 3~SPTR: D0WNP0 O-methyltransferase~PFAM: O-methyltransferase gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1241 Arch_1242 Arch_1242 Arch_1242 1377652 1378389 - Sec-independent periplasmic protein translocase COGs: COG0805 Sec-independent protein secretion pathway component TatC~InterPro IPR002033~KEGG: jde:Jden_1291 sec-independent protein translocase%2C TatC subunit~PFAM: Sec-independent periplasmic protein translocase~SPTR: D0WLB2 Sec-independent protein translocase TatC~PFAM: Sec-independent protein translocase protein (TatC)~TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1242 Arch_1243 Arch_1243 Arch_1243 1378417 1378605 - sec-independent translocation protein mttA/Hcf106 InterPro IPR003369~KEGG: jde:Jden_1290 twin-arginine translocation protein%2C TatA/E family subunit~PFAM: sec-independent translocation protein mttA/Hcf106~SPTR: D0WLB1 Sec-independent twin-arginine translocase system protein~PFAM: mttA/Hcf106 family~TIGRFAM: twin arginine-targeting protein translocase%2C TatA/E family gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1243 Arch_1244 Arch_1244 Arch_1244 1378770 1379531 + molybdenum ABC transporter%2C periplasmic molybdate-binding protein COGs: COG0725 ABC-type molybdate transport system periplasmic component~InterPro IPR005950:IPR006059~KEGG: pac:PPA0504 putative molybdate-binding protein precursor~PFAM: extracellular solute-binding protein family 1~SPTR: Q6AAF9 Putative molybdate-binding protein~TIGRFAM: molybdenum ABC transporter%2C periplasmic molybdate-binding protein~PFAM: Substrate binding domain of ABC-type glycine betaine transport system~TIGRFAM: molybdenum ABC transporter%2C periplasmic molybdate-binding protein gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1244 Arch_1245 Arch_1245 Arch_1245 1379534 1381018 + NifC-like ABC-type porter COGs: COG4149 ABC-type molybdate transport system permease component~InterProIPR006469:IPR011867:IPR003439:IPR000515:IPR 003593~KEGG: sgr:SGR_3501 putative ABC transporter ATPase and permease component~PFAM: ABC transporter related%3B binding-protein-dependent transport systems inner membrane component~SMART: AAA ATPase~SPTR: A7BBD7 Putative uncharacterized protein~TIGRFAM: NifC-like ABC-type porter%3B molybdate ABC transporter%2C inner membrane subunit~PFAM: Binding-protein-dependent transport system inner membrane component%3B ABC transporter~TIGRFAM: molybdate ABC transporter%2C permease protein%3B NifC-like ABC-type porter gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1245 Arch_1246 Arch_1246 Arch_1246 1381039 1381518 - molybdenum cofactor biosynthesis protein C COGs: COG0315 Molybdenum cofactor biosynthesis enzyme~InterPro IPR002820~KEGG: car:cauri_1058 molybdenum cofactor biosynthesis protein~PFAM: molybdopterin cofactor biosynthesis MoaC region~SPTR: A7BBB8 Putative uncharacterized protein~TIGRFAM: molybdenum cofactor biosynthesis protein C~PFAM: MoaC family~TIGRFAM: molybdenum cofactor biosynthesis protein MoaC gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1246 Arch_1247 Arch_1247 Arch_1247 1381539 1382750 - molybdenum cofactor synthesis domain protein COGs: COG0303 Molybdopterin biosynthesis enzyme~InterPro IPR005110:IPR001453:IPR005111:IPR020817~KEGG: bcv:Bcav_1229 molybdenum cofactor synthesis domain protein~PFAM: MoeA domain protein domain I and II%3B molybdopterin binding domain%3B MoeA domain protein domain IV~SPTR: C5C1M1 Molybdenum cofactor synthesis domain protein~TIGRFAM: molybdenum cofactor synthesis domain protein~PFAM: Probable molybdopterin binding domain%3B MoeA N-terminal region (domain I and II)%3B MoeA C-terminal region (domain IV)~TIGRFAM: molybdenum cofactor synthesis domain gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1247 Arch_1248 Arch_1248 Arch_1248 1382756 1383475 - UBA/THIF-type NAD/FAD binding protein COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2~InterPro IPR009036:IPR016040:IPR000594:IPR007901~KEGG: ach:Achl_2496 UBA/ThiF-type NAD/FAD binding protein~PFAM: UBA/THIF-type NAD/FAD binding protein%3B MoeZ/MoeB domain protein~SPTR: B8HBS3 UBA/THIF-type NAD/FAD binding protein~PFAM: MoeZ/MoeB domain%3B ThiF family gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1248 Arch_1249 Arch_1249 Arch_1249 1383524 1384516 + molybdopterin biosynthesis MoaE protein COGs: COG0521 Molybdopterin biosynthesis protein~InterPro IPR003448:IPR001453~KEGG: xce:Xcel_1817 molybdenum cofactor synthesis domain protein~PFAM: molybdopterin biosynthesis MoaE protein%3B molybdopterin binding domain~SPTR: D0WL91 Molybdopterin converting factor%2C subunit 2~PFAM: Probable molybdopterin binding domain%3B MoaE protein~TIGRFAM: molybdenum cofactor synthesis domain gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1249 Arch_1250 Arch_1250 Arch_1250 1384517 1384774 - thiamineS protein InterPro IPR016155:IPR012675:IPR003749~KEGG: fre:Franean1_6174 thiamineS protein~PFAM: thiamineS protein~SPTR: D0WL89 Molybdopterin converting factor%2C subunit 1~PFAM: ThiS family gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1250 Arch_1251 Arch_1251 Arch_1251 1384812 1385876 - molybdenum cofactor biosynthesis protein A COGs: COG2896 Molybdenum cofactor biosynthesis protein~InterProIPR013483:IPR000385:IPR013785:IPR006638:IPR 007197:IPR010505~KEGG: kra:Krad_3625 molybdenum cofactor biosynthesis protein A~PFAM: molybdenum cofactor synthesis domain protein%3B Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: D0WL88 Molybdenum cofactor biosynthesis protein A~TIGRFAM: molybdenum cofactor biosynthesis protein A~PFAM: Molybdenum Cofactor Synthesis C%3B Radical SAM superfamily~TIGRFAM: molybdenum cofactor biosynthesis protein A%2C bacterial gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1251 Arch_1252 Arch_1252 Arch_1252 1385949 1386824 - 4Fe-4S ferredoxin iron-sulfur binding domain protein InterPro IPR017896:IPR017900:IPR001450~KEGG: cur:cur_0829 hypothetical protein~PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~SPTR: C2BU46 Putative uncharacterized protein gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1252 Arch_1253 Arch_1253 Arch_1253 1386817 1387434 - cytoplasmic chaperone TorD family protein COGs: COG3381 Uncharacterized component of anaerobic dehydrogenase~InterPro IPR010395~KEGG: pac:PPA0497 putative component of anaerobic dehydrogenase~PFAM: cytoplasmic chaperone TorD family protein~SPTR: Q6AAG6 Putative component of anaerobic dehydrogenase~PFAM: Nitrate reductase delta subunit gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1253 Arch_1254 Arch_1254 Arch_1254 1387552 1388514 - DMSO reductase anchor subunit (DmsC) COGs: COG3302 DMSO reductase anchor subunit~InterPro IPR007059~KEGG: pac:PPA0515 anaerobic dimethyl sulfoxide reductase chain C~PFAM: DMSO reductase anchor subunit (DmsC)~SPTR: C2BU48 Anaerobic dimethyl sulfoxide reductase chain C~PFAM: DMSO reductase anchor subunit (DmsC) gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1254 Arch_1255 Arch_1255 Arch_1255 1388514 1389152 - dimethylsulfoxide reductase%2C chain B COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1~InterPro IPR014297:IPR017896:IPR017900:IPR001450~KEGG: pac:PPA0516 anaerobic dimethyl sulfoxide reductase%2C chain B~PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~SPTR: C2BU49 Anaerobic dimethyl sulfoxide reductase%2C chain B~TIGRFAM: dimethylsulfoxide reductase%2C chain B~PFAM: 4Fe-4S binding domain~TIGRFAM: DMSO reductase%2C iron-sulfur subunit gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1255 Arch_1256 Arch_1256 Arch_1256 1389164 1391716 - anaerobic dimethyl sulfoxide reductase%2C A subunit%2C DmsA/YnfE family COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing~InterProIPR009010:IPR006311:IPR011888:IPR017909:IPR 006655:IPR019546:IPR006963:IPR006656:IPR006657~KEGG: pac:PPA0517 anaerobic dimethyl sulfoxide reductase chain A~PFAM: molybdopterin oxidoreductase%3B molybdopterin oxidoreductase Fe4S4 region%3B Twin-arginine translocation pathway%2C signal sequence%2C subgroup%3B molydopterin dinucleotide-binding region~SPTR: C2BU50 Possible Trimethylamine-N-oxide reductase (Cytochrome c)~TIGRFAM: anaerobic dimethyl sulfoxide reductase%2C A subunit%2C DmsA/YnfE family~PFAM: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide binding domain%3B Molybdopterin oxidoreductase Fe4S4 domain~TIGRFAM: anaerobic dimethyl sulfoxide reductase%2C A subunit%2C DmsA/YnfE family%3B molybdopterin guanine dinucleotide-containing S/N-oxide reductases gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1256 Arch_1257 Arch_1257 Arch_1257 1392014 1392691 + putative transcriptional regulator%2C TetR family InterPro IPR009057:IPR001647~KEGG: oih:OB3184 transcriptional regulator~SPTR: C2BU51 Putative uncharacterized protein gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1257 Arch_1258 Arch_1258 Arch_1258 1392714 1393040 + conserved hypothetical protein InterPro IPR003998~KEGG: art:Arth_2793 hypothetical protein~SPTR: D0YUR5 Putative uncharacterized protein gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1258 Arch_1259 Arch_1259 Arch_1259 1393050 1393322 + putative molybdopterin-guanine dinucleotide biosynthesis protein KEGG: pac:PPA0514 putative molybdopterin-guanine dinucleotide biosynthesis protein~SPTR: C0W5Q3 Putative uncharacterized protein gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1259 Arch_1260 Arch_1260 Arch_1260 1393407 1393586 - conserved hypothetical protein KEGG: xce:Xcel_0979 hypothetical protein~SPTR: C1RFG8 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3117) gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1260 Arch_1261 Arch_1261 Arch_1261 1393664 1394425 - conserved hypothetical protein COGs: COG1611 Rossmann fold nucleotide-binding protein~InterPro IPR005269~KEGG: jde:Jden_0806 hypothetical protein~PFAM: conserved hypothetical protein~SPTR: D0WNP2 Methionyl-tRNA formyltransferase~PFAM: Possible lysine decarboxylase~TIGRFAM: conserved hypothetical protein%2C DprA/Smf-related%2C family 1%3B conserved hypothetical protein%2C DprA/Smf-related%2C family 2 gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1261 Arch_1262 Arch_1262 Arch_1262 1394536 1395360 + purine nucleotide phosphorylase COGs: COG0005 Purine nucleoside phosphorylase~InterPro IPR011268:IPR011269:IPR000845~KEGG: krh:KRH_17010 purine nucleoside phosphorylase~PFAM: purine or other phosphorylase family 1~SPTR: D0WNP4 Purine nucleotide phosphorylase~TIGRFAM: purine nucleotide phosphorylase%3B inosine guanosine and xanthosine phosphorylase family~PFAM: Phosphorylase superfamily~TIGRFAM: inosine guanosine and xanthosine phosphorylase family%3B purine nucleotide phosphorylase gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1262 Arch_1263 Arch_1263 Arch_1263 1395501 1397192 + phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I COGs: COG1109 Phosphomannomutase~InterProIPR016055:IPR016066:IPR005844:IPR005845:IPR 005846:IPR005841~KEGG: krh:KRH_18890 putative phosphoglucomutase~PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III~SPTR: D0WNP5 Phosphomannomutase~PFAM: Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain II%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III%3B Phosphoglucomutase/phosphomannomutase%2C C-terminal domain%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain I gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1263 Arch_1264 Arch_1264 Arch_1264 1397348 1398010 - deoxyribose-phosphate aldolase COGs: COG0274 Deoxyribose-phosphate aldolase~InterPro IPR011343:IPR002915:IPR013785~KEGG: cdi:DIP0273 deoxyribose-phosphate aldolase~PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase~PRIAM: Deoxyribose-phosphate aldolase~SPTR: D0WNP6 Deoxyribose-phosphate aldolase~TIGRFAM: deoxyribose-phosphate aldolase~PFAM: DeoC/LacD family aldolase~TIGRFAM: deoxyribose-phosphate aldolase gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1264 Arch_1265 Arch_1265 Arch_1265 1398053 1398766 - hypothetical protein KEGG: bcv:Bcav_2937 hypothetical protein~SPTR: C5BZ67 Putative uncharacterized protein gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1265 Arch_1266 Arch_1266 Arch_1266 1398766 1400055 - pyrimidine-nucleoside phosphorylase COGs: COG0213 Thymidine phosphorylase~InterProIPR000053:IPR017459:IPR000312:IPR013102:IPR 020072:IPR018090:IPR017872~KEGG: car:cauri_1882 thymidine phosphorylase~PFAM: Pyrimidine nucleoside phosphorylase domain%3B glycosyl transferase family 3%3B Glycosyl transferase%2C family 3-like~PRIAM: Thymidine phosphorylase~SPTR: C3PI21 Thymidine phosphorylase~TIGRFAM: pyrimidine-nucleoside phosphorylase~PFAM: Glycosyl transferase family%2C a/b domain%3B Pyrimidine nucleoside phosphorylase C-terminal domain%3B Glycosyl transferase family%2C helical bundle domain~TIGRFAM: pyrimidine-nucleoside phosphorylase gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1266 Arch_1267 Arch_1267 Arch_1267 1400055 1400525 - CMP/dCMP deaminase zinc-binding protein COGs: COG0295 Cytidine deaminase~InterPro IPR002125:IPR016193:IPR016192~KEGG: sma:SAV_3366 cytidine deaminase~PFAM: CMP/dCMP deaminase zinc-binding~SPTR: C1YSR4 Cytidine deaminase~PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region~TIGRFAM: cytidine deaminase%2C homotetrameric gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1267 Arch_1268 Arch_1268 Arch_1268 1400596 1401930 - inner-membrane translocator COGs: COG1079 ABC-type transport system permease component~InterPro IPR001851~KEGG: bcv:Bcav_2944 inner-membrane translocator~PFAM: inner-membrane translocator~SPTR: A7B9G8 Putative uncharacterized protein~PFAM: Branched-chain amino acid transport system / permease component gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1268 Arch_1269 Arch_1269 Arch_1269 1401927 1403207 - inner-membrane translocator COGs: COG4603 ABC-type uncharacterized transport system permease component~InterPro IPR001851~KEGG: xce:Xcel_0996 inner-membrane translocator~PFAM: inner-membrane translocator~SPTR: A7B9G9 Putative uncharacterized protein~PFAM: Branched-chain amino acid transport system / permease component gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1269 Arch_1270 Arch_1270 Arch_1270 1403207 1404817 - ABC transporter related protein COGs: COG3845 ABC-type uncharacterized transport systems ATPase components~InterPro IPR003439:IPR003593:IPR017871~KEGG: kse:Ksed_07930 nucleoside ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: A7B9H0 Putative uncharacterized protein~PFAM: ABC transporter gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1270 Arch_1271 Arch_1271 Arch_1271 1404952 1406037 - basic membrane lipoprotein COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein~InterPro IPR003760~KEGG: xce:Xcel_0994 basic membrane lipoprotein~PFAM: basic membrane lipoprotein~SPTR: A7B9H1 Putative uncharacterized protein~PFAM: Basic membrane protein gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1271 Arch_1272 Arch_1272 Arch_1272 1406305 1407411 - Mannose-1-phosphate guanylyltransferase COGs: COG0836 Mannose-1-phosphate guanylyltransferase~InterPro IPR005835:IPR001538:IPR011051~KEGG: xce:Xcel_0992 mannose-1-phosphate guanylyltransferase (GDP)~PFAM: Nucleotidyl transferase%3B mannose-6-phosphate isomerase type II~PRIAM: Mannose-1-phosphate guanylyltransferase~SPTR: D1BYU8 Mannose-1-phosphate guanylyltransferase (GDP)~PFAM: Nucleotidyl transferase%3B Mannose-6-phosphate isomerase~TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1272 Arch_1273 Arch_1273 Arch_1273 1407436 1408680 - ribonuclease BN COGs: COG1295 membrane protein~InterPro IPR004664:IPR018247~KEGG: bcv:Bcav_2955 ribonuclease BN~PFAM: ribonuclease BN~SPTR: C5BZ85 Ribonuclease BN~PFAM: Ribonuclease BN-like family~TIGRFAM: ribonuclease%2C putative gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1273 Arch_1274 Arch_1274 Arch_1274 1408683 1409555 - exodeoxyribonuclease III Xth COGs: COG0708 Exonuclease III~InterPro IPR004808:IPR005135~KEGG: jde:Jden_0698 exodeoxyribonuclease III Xth~PFAM: Endonuclease/exonuclease/phosphatase~SPTR: D0WNQ6 Exodeoxyribonuclease III~TIGRFAM: exodeoxyribonuclease III Xth~PFAM: Endonuclease/Exonuclease/phosphatase family~TIGRFAM: exodeoxyribonuclease III%3B exodeoxyribonuclease III (xth) gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1274 Arch_1275 Arch_1275 Arch_1275 1409603 1410454 - Methylenetetrahydrofolate dehydrogenase (NADP(+)) COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase~InterPro IPR020630:IPR020631:IPR016040:IPR000672~KEGG: krh:KRH_17990 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase~PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain%3B Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain~PRIAM: Methylenetetrahydrofolate dehydrogenase (NADP(+))~SPTR: C2KRA9 Methenyltetrahydrofolate cyclohydrolase~PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain%3B Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1275 Arch_1276 Arch_1276 Arch_1276 1410478 1411761 - Glycine hydroxymethyltransferase COGs: COG0112 Glycine/serine hydroxymethyltransferase~InterPro IPR001085:IPR015421:IPR015424~KEGG: xce:Xcel_0754 glycine hydroxymethyltransferase~PFAM: glycine hydroxymethyltransferase~PRIAM: Glycine hydroxymethyltransferase~SPTR: D1BXI3 Glycine hydroxymethyltransferase~PFAM: Serine hydroxymethyltransferase gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1276 Arch_1277 Arch_1277 Arch_1277 1411913 1412761 + formyltetrahydrofolate deformylase COGs: COG0788 Formyltetrahydrofolate hydrolase~InterPro IPR004810:IPR002912:IPR002376~KEGG: aau:AAur_1226 formyltetrahydrofolate deformylase~PFAM: formyl transferase domain protein%3B amino acid-binding ACT domain protein~SPTR: C2KP22 Formyltetrahydrofolate deformylase~TIGRFAM: formyltetrahydrofolate deformylase~PFAM: ACT domain%3B Formyl transferase~TIGRFAM: formyltetrahydrofolate deformylase gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1277 Arch_1278 Arch_1278 Arch_1278 1412786 1414399 - phosphomethylpyrimidine kinase COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase~InterPro IPR013749:IPR004305:IPR016084:IPR004399~KEGG: pac:PPA0110 thiamine-phosphate pyrophosphorylase~PFAM: Phosphomethylpyrimidine kinase type-1%3B TENA/THI-4 domain protein~SPTR: Q6ABQ9 Putative thiamine biosynthesis protein~TIGRFAM: phosphomethylpyrimidine kinase~PFAM: Phosphomethylpyrimidine kinase%3B TENA/THI-4/PQQC family~TIGRFAM: phosphomethylpyrimidine kinase gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1278 Arch_1279 Arch_1279 Arch_1279 1414433 1415140 - Thiamine-phosphate diphosphorylase COGs: COG0352 Thiamine monophosphate synthase~InterPro IPR003733:IPR013785~KEGG: vha:VIBHAR_06844 thiamine-phosphate pyrophosphorylase~PFAM: thiamine monophosphate synthase~PRIAM: Thiamine-phosphate diphosphorylase~SPTR: D0WTK8 Thiamine-phosphate diphosphorylase~PFAM: Thiamine monophosphate synthase/TENI~TIGRFAM: thiamine-phosphate pyrophosphorylase gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1279 Arch_1280 Arch_1280 Arch_1280 1415137 1415940 - Hydroxyethylthiazole kinase COGs: COG2145 Hydroxyethylthiazole kinase sugar kinase family~InterPro IPR011144:IPR000417~KEGG: cgt:cgR_1525 hydroxyethylthiazole kinase~PFAM: hydroxyethylthiazole kinase~PRIAM: Hydroxyethylthiazole kinase~SPTR: C5VF20 Hydroxyethylthiazole kinase~PFAM: Hydroxyethylthiazole kinase family~TIGRFAM: hydroxyethylthiazole kinase gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1280 Arch_1281 Arch_1281 Arch_1281 1416054 1416662 - maltose O-acetyltransferase COGs: COG0110 Acetyltransferase (isoleucine patch superfamily)~InterPro IPR001451:IPR011004:IPR018357~KEGG: tfu:Tfu_1260 maltose O-acetyltransferase~SPTR: D0YUJ3 Maltose O-acetyltransferase~PFAM: Bacterial transferase hexapeptide (three repeats) gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1281 Arch_1282 Arch_1282 Arch_1282 1416672 1417340 - two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterProIPR000792:IPR001789:IPR011991:IPR011006:IPR 016032~KEGG: jde:Jden_0656 two component transcriptional regulator%2C LuxR family~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: regulatory protein LuxR%3B response regulator receiver~SPTR: C7R1A5 Two component transcriptional regulator%2C LuxR family~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1282 Arch_1283 Arch_1283 Arch_1283 1417337 1418557 - putative signal transduction histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR003594~KEGG: bcv:Bcav_3034 putative signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein~SPTR: C0W6Q0 Signal transduction histidine kinase~PFAM: PspC domain gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1283 Arch_1284 Arch_1284 Arch_1284 1418671 1420008 + phage shock protein C%2C PspC InterPro IPR007168~KEGG: rsa:RSal33209_0977 putative stress-responsive transcriptional regulator~PFAM: PspC domain protein~SPTR: C0W6P9 Possible phage shock protein C%2C PspC~PFAM: PspC domain~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1284 Arch_1285 Arch_1285 Arch_1285 1420018 1420281 + hypothetical protein KEGG: chl:Chy400_1644 polysaccharide biosynthesis protein~SPTR: C0W6P8 Putative uncharacterized protein gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1285 Arch_1286 Arch_1286 Arch_1286 1420222 1420587 - SecC motif-containing protein COGs: COG3012 conserved hypothetical protein~KEGG: nca:Noca_0950 SecC motif-containing protein~SPTR: A1SF88 Sec-C motif containing protein gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1286 Arch_1287 Arch_1287 Arch_1287 1420693 1421688 - malate dehydrogenase COGs: COG0039 Malate/lactate dehydrogenase~InterProIPR001557:IPR001236:IPR016040:IPR015955:IPR 010945~KEGG: sgr:SGR_2711 malate dehydrogenase~PFAM: Lactate/malate dehydrogenase~SPTR: D0WNS0 Malate dehydrogenase~TIGRFAM: malate dehydrogenase~PFAM: lactate/malate dehydrogenase%2C alpha/beta C-terminal domain%3B lactate/malate dehydrogenase%2C NAD binding domain~TIGRFAM: malate dehydrogenase gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1287 Arch_1288 Arch_1288 Arch_1288 1421914 1422129 + hypothetical protein gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1288 Arch_1289 Arch_1289 Arch_1289 1422239 1423897 - Glucose-6-phosphate isomerase COGs: COG0166 Glucose-6-phosphate isomerase~InterPro IPR001672:IPR018189~KEGG: pac:PPA2131 glucose-6-phosphate isomerase~PFAM: phosphoglucose isomerase (PGI)~PRIAM: Glucose-6-phosphate isomerase~SPTR: D0WNS5 Glucose-6-phosphate isomerase~PFAM: Phosphoglucose isomerase gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1289 Arch_1290 Arch_1290 Arch_1290 1424004 1426247 - alpha amylase catalytic region COGs: COG0366 Glycosidase~InterPro IPR006047:IPR013781:IPR006589:IPR017853~KEGG: xce:Xcel_0747 alpha-1%2C6-glucosidase%2C pullulanase-type~PFAM: alpha amylase catalytic region~SMART: alpha amylase catalytic sub domain~SPTR: C1RNE2 Alpha-1%2C6-glucosidase%2C pullulanase-type~PFAM: Alpha amylase%2C catalytic domain gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1290 Arch_1291 Arch_1291 Arch_1291 1426393 1428687 + 6-phosphofructokinase COGs: COG0205 6-phosphofructokinase~InterPro IPR000023:IPR009161:IPR015912~KEGG: app:CAP2UW1_0237 6-phosphofructokinase~PFAM: phosphofructokinase~PRIAM: 6-phosphofructokinase~SPTR: D0WNT4 6-phosphofructokinase~TIGRFAM: 6-phosphofructokinase~PFAM: Phosphofructokinase~TIGRFAM: 6-phosphofructokinase%2C eukaryotic type gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1291 Arch_1292 Arch_1292 Arch_1292 1428762 1433996 - LPXTG-motif cell wall anchor domain protein COGs: COG3250 Beta-galactosidase/beta-glucuronidase~InterProIPR000421:IPR006104:IPR006102:IPR006103:IPR 011081:IPR011080:IPR013781:IPR019931:IPR017853:IPR008979:I PR006101~KEGG: apv:Apar_0102 glycoside hydrolase family 2 sugar binding~PFAM: glycoside hydrolase family 2 sugar binding%3B glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich%3B glycoside hydrolase family 2 TIM barrel%3B Ig domain protein%3B coagulation factor 5/8 type domain protein~SPTR: A4K5H9 Beta-galactosidase BbgIII~TIGRFAM: LPXTG-motif cell wall anchor domain protein~PFAM: F5/8 type C domain%3B domain%3B Glycosyl hydrolases family 2%2C TIM barrel domain%3B Bacterial Ig-like domain (group 4)%3B Glycosyl hydrolases family 2%2C sugar binding domain~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1292 Arch_1293 Arch_1293 Arch_1293 1434200 1434472 - hypothetical protein KEGG: bfa:Bfae_24070 hypothetical protein~SPTR: D0WNU3 Putative membrane protein~PFAM: Protein of unknown function (DUF3017) gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1293 Arch_1294 Arch_1294 Arch_1294 1434465 1435628 - hypothetical protein KEGG: xce:Xcel_0736 PE-PGRS family protein~SPTR: D0WNV5 Putative uncharacterized protein gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1294 Arch_1295 Arch_1295 Arch_1295 1435684 1436604 - succinyl-CoA synthetase%2C alpha subunit COGs: COG0074 Succinyl-CoA synthetase alpha subunit~InterProIPR005810:IPR003781:IPR005811:IPR016040:IPR 016102:IPR017440~KEGG: jde:Jden_0672 succinyl-CoA synthetase%2C alpha subunit~PFAM: CoA-binding domain protein%3B ATP-citrate lyase/succinyl-CoA ligase~SPTR: D0WNW3 Succinyl-CoA synthetase subunit alpha~TIGRFAM: succinyl-CoA synthetase%2C alpha subunit~PFAM: CoA binding domain%3B CoA-ligase~TIGRFAM: succinyl-CoA synthetase%2C alpha subunit gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1295 Arch_1296 Arch_1296 Arch_1296 1436615 1437787 - succinyl-CoA synthetase%2C beta subunit COGs: COG0045 Succinyl-CoA synthetase beta subunit~InterProIPR011761:IPR013650:IPR005811:IPR013816:IPR 016102:IPR005809:IPR017866~KEGG: kra:Krad_3999 succinyl-CoA synthetase%2C beta subunit~PFAM: ATP-grasp domain protein%3B ATP-citrate lyase/succinyl-CoA ligase~PRIAM: Succinate--CoA ligase (ADP-forming)~SPTR: D0WNW4 Succinyl-CoA ligase [ADP-forming] subunit beta~TIGRFAM: succinyl-CoA synthetase%2C beta subunit~PFAM: CoA-ligase%3B ATP-grasp domain~TIGRFAM: succinyl-CoA synthetase%2C beta subunit gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1296 Arch_1297 Arch_1297 Arch_1297 1437931 1439934 - acyltransferase 3 COGs: COG1835 acyltransferase~InterPro IPR002656:IPR013830~KEGG: kse:Ksed_15740 predicted acyltransferase~PFAM: acyltransferase 3~SPTR: C7NI82 Predicted acyltransferase~PFAM: Acyltransferase family gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1297 Arch_1298 Arch_1298 Arch_1298 1439939 1442449 - UvrD/REP helicase COGs: COG0210 Superfamily I DNA and RNA helicase~InterPro IPR014016:IPR014017:IPR000212~KEGG: bcv:Bcav_3026 ATP-dependent DNA helicase PcrA~PFAM: UvrD/REP helicase~SPTR: Q1M2Q1 Helicase~PFAM: UvrD/REP helicase~TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase%2C Streptococcus agalactiae type%3B ATP-dependent DNA helicase PcrA gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1298 Arch_1299 Arch_1299 Arch_1299 1442636 1445209 - LPXTG-motif cell wall anchor domain protein COGs: COG4409 Neuraminidase (sialidase)~InterPro IPR002860:IPR019931:IPR011040~KEGG: bln:Blon_2348 exo-alpha-sialidase~PFAM: glycosyl hydrolase BNR repeat-containing protein~SPTR: B7GNQ0 Exo-alpha-sialidase~TIGRFAM: LPXTG-motif cell wall anchor domain protein~PFAM: BNR/Asp-box repeat gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1299 Arch_1300 Arch_1300 Arch_1300 1445409 1445792 + AzlC family protein COGs: COG1296 branched-chain amino acid permease (azaleucine resistance)~InterPro IPR011606~KEGG: bsu:BSU26710 branched-chain amino acid transporter~PFAM: AzlC family protein~SPTR: C6LJP4 Azaleucine resistance protein AzlC~PFAM: AzlC protein gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1300 Arch_1301 Arch_1301 Arch_1301 1445849 1446166 + transposase IS3/IS911 family protein InterPro IPR002514~KEGG: kse:Ksed_22010 transposase~PFAM: transposase IS3/IS911 family protein~SPTR: A7B9Y6 Putative uncharacterized protein~PFAM: Transposase gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1301 Arch_1302 Arch_1302 Arch_1302 1446226 1447015 + pseudogene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1302 Arch_1303 Arch_1303 Arch_1303 1447074 1447496 - hypothetical protein KEGG: cli:Clim_1762 hypothetical protein~SPTR: B3EEJ1 Putative uncharacterized protein gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1303 Arch_1304 Arch_1304 Arch_1304 1447565 1448355 - pseudogene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1304 Arch_1305 Arch_1305 Arch_1305 1448415 1448732 - transposase IS3/IS911 family protein InterPro IPR002514~KEGG: kse:Ksed_22010 transposase~PFAM: transposase IS3/IS911 family protein~SPTR: A7B9Y6 Putative uncharacterized protein~PFAM: Transposase gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1305 Arch_1306 Arch_1306 Arch_1306 1448924 1449295 - conserved hypothetical protein KEGG: cpf:CPF_0994 hypothetical protein~SPTR: B1RAN5 Putative membrane protein gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1306 Arch_1307 Arch_1307 Arch_1307 1449529 1451094 - GMP synthase%2C large subunit COGs: COG0519 GMP synthase PP-ATPase domain/subunit~InterProIPR017926:IPR000991:IPR018318:IPR001674:IPR 014729:IPR004739:IPR011702:IPR006220:IPR001317~KEGG: rmu:RMDY18_05420 GMP synthase~PFAM: GMP synthase domain protein%3B glutamine amidotransferase class-I%3B tRNA methyl transferase-like~SPTR: Q1M2R0 GMP synthase/glutamine amidotransferase~TIGRFAM: GMP synthase%2C large subunit%3B GMP synthase%2C small subunit~PFAM: Glutamine amidotransferase class-I%3B GMP synthase C terminal domain%3B Asparagine synthase~TIGRFAM: GMP synthase (glutamine-hydrolyzing)%2C C-terminal domain or B subunit%3B GMP synthase (glutamine-hydrolyzing)%2C N-terminal domain or A subunit gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1307 Arch_1308 Arch_1308 Arch_1308 1451220 1451414 - hypothetical protein SPTR: B4B116 Lipoprotein signal peptidase gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1308 Arch_1309 Arch_1309 Arch_1309 1451627 1451743 + hypothetical protein gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1309 Arch_1310 Arch_1310 Arch_1310 1451727 1452011 + hypothetical protein KEGG: sun:SUN_2192 phospho-N-acetylmuramoyl-pentapeptide-transferase~SPTR: A6QCC3 Phospho-N-acetylmuramoyl-pentapeptide-transferase gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1310 Arch_1311 Arch_1311 Arch_1311 1452034 1452639 - conserved hypothetical protein KEGG: cjk:jk0698 hypothetical protein~SPTR: Q4JWE7 Putative uncharacterized protein~manually curated gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1311 Arch_1312 Arch_1312 Arch_1312 1452641 1453441 - conserved hypothetical protein KEGG: cjk:jk0699 hypothetical protein~SPTR: Q4JWE6 Putative uncharacterized protein~PFAM: Domain of unknown function (DUF955) gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1312 Arch_1313 Arch_1313 Arch_1313 1453458 1453787 - transcriptional regulator%2C XRE family InterPro IPR001387:IPR010982~KEGG: cjk:jk0700 hypothetical protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein~SPTR: Q4JWE5 Putative uncharacterized protein~PFAM: Helix-turn-helix gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1313 Arch_1314 Arch_1314 Arch_1314 1453863 1454792 - pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145:IPR020103:IPR006224~KEGG: sma:SAV_6707 ribosomal pseudouridine synthase~PFAM: pseudouridine synthase~SPTR: D0WNY8 RNA pseudouridylate synthase family protein~PFAM: RNA pseudouridylate synthase gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1314 Arch_1315 Arch_1315 Arch_1315 1454872 1456491 + phosphate acetyltransferase COGs: COG0280 Phosphotransacetylase~InterPro IPR002505:IPR004614~KEGG: bfa:Bfae_08770 phosphotransacetylase~PFAM: phosphate acetyl/butaryl transferase~SPTR: D0WNY9 Putative phosphate acetyltransferase pta~TIGRFAM: phosphate acetyltransferase~PFAM: Phosphate acetyl/butaryl transferase~TIGRFAM: phosphate acetyltransferase gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1315 Arch_1316 Arch_1316 Arch_1316 1456579 1457751 + acetate kinase COGs: COG0282 Acetate kinase~InterPro IPR004372:IPR000890~KEGG: xce:Xcel_0692 acetate kinase~PFAM: acetate and butyrate kinase~SPTR: D0WNZ0 Acetate kinase~TIGRFAM: acetate kinase~PFAM: Acetokinase family~TIGRFAM: acetate kinase gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1316 Arch_1317 Arch_1317 Arch_1317 1457753 1458199 + GCN5-related N-acetyltransferase InterPro IPR000182:IPR016181~KEGG: sgr:SGR_127 putative acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: A7B9Y5 Putative uncharacterized protein~PFAM: Acetyltransferase (GNAT) family gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1317 Arch_1318 Arch_1318 Arch_1318 1458511 1460595 - LPXTG-motif cell wall anchor domain protein COGs: COG1196 Chromosome segregation ATPase~InterPro IPR019931~KEGG: hypothetical protein~SPTR: Q4Q3D8 Putative uncharacterized protein~TIGRFAM: LPXTG-motif cell wall anchor domain protein gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1318 Arch_1319 Arch_1319 Arch_1319 1461120 1462508 - fumarate lyase COGs: COG0114 Fumarase~InterPro IPR000362:IPR018951:IPR008948:IPR020557~KEGG: bcv:Bcav_3051 fumarate lyase~PFAM: fumarate lyase%3B Fumarase C-like~SPTR: C5BZW5 Fumarate lyase~PFAM: Fumarase C C-terminus%3B Lyase~TIGRFAM: fumarate hydratase%2C class II gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1319 Arch_1320 Arch_1320 Arch_1320 1462606 1463715 - IMP dehydrogenase family protein COGs: COG0516 IMP dehydrogenase/GMP reductase~InterProIPR001093:IPR013785:IPR005992:IPR001412:IPR 000169~KEGG: jde:Jden_0641 IMP dehydrogenase family protein~PFAM: IMP dehydrogenase/GMP reductase~SPTR: C1RPF8 IMP dehydrogenase family protein~TIGRFAM: IMP dehydrogenase family protein~PFAM: IMP dehydrogenase / GMP reductase domain~TIGRFAM: IMP dehydrogenase family protein gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1320 Arch_1321 Arch_1321 Arch_1321 1463816 1464502 + Exonuclease RNase T and DNA polymerase III COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease~InterPro IPR013520:IPR006055:IPR012337~KEGG: jde:Jden_0640 exonuclease RNase T and DNA polymerase III~PFAM: Exonuclease RNase T and DNA polymerase III~SMART: Exonuclease~SPTR: D0WP21 Putative DNA polymerase III epsilon subunit~PFAM: Exonuclease gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1321 Arch_1322 Arch_1322 Arch_1322 1464705 1466249 - alkyl hydroperoxide reductase%2C F subunit COGs: COG3634 Alkyl hydroperoxide reductase large subunit~InterProIPR012081:IPR002109:IPR013027:IPR012335:IPR 012336:IPR000103:IPR008255~KEGG: nar:Saro_1718 pyridine nucleotide-disulphide oxidoreductase%2C class-II%2C active site~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~SPTR: Q3KC40 Alkyl hydroperoxide reductase subunit~TIGRFAM: alkyl hydroperoxide reductase%2C F subunit~PFAM: Pyridine nucleotide-disulphide oxidoreductase~TIGRFAM: alkyl hydroperoxide reductase%2C F subunit gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1322 Arch_1323 Arch_1323 Arch_1323 1466249 1466812 - peroxiredoxin COGs: COG0450 Peroxiredoxin~InterProIPR017936:IPR000866:IPR019479:IPR012335:IPR 017559:IPR012336~KEGG: svi:Svir_21220 peroxiredoxin~PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen%3B Peroxiredoxin-like~SPTR: C7MW35 Peroxiredoxin~TIGRFAM: peroxiredoxin~manually curated~PFAM: C-terminal domain of 1-Cys peroxiredoxin%3B AhpC/TSA family~TIGRFAM: peroxiredoxin gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1323 Arch_1324 Arch_1324 Arch_1324 1467131 1467570 + pseudogene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1324 Arch_1325 Arch_1325 Arch_1325 1467842 1469011 - GMP reductase COGs: COG0516 IMP dehydrogenase/GMP reductase~InterPro IPR001093:IPR013785:IPR015875~KEGG: bfa:Bfae_08690 inosine-5'-monophosphate dehydrogenase~PFAM: IMP dehydrogenase/GMP reductase~PRIAM: GMP reductase~SPTR: A7B9H7 Inosine-5'-monophosphate dehydrogenase~PFAM: IMP dehydrogenase / GMP reductase domain~TIGRFAM: inosine-5'-monophosphate dehydrogenase gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1325 Arch_1326 Arch_1326 Arch_1326 1469236 1469532 + transcription factor WhiB InterPro IPR003482~KEGG: kse:Ksed_07590 transcription factor WhiB~PFAM: transcription factor WhiB~SPTR: C0W0U7 Transcription factor WhiB~PFAM: Transcription factor WhiB gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1326 Arch_1327 Arch_1327 Arch_1327 1469795 1470091 - Chaperonin Cpn10 COGs: COG0234 Co-chaperonin GroES (HSP10)~InterPro IPR020818:IPR011032:IPR001476:IPR018369~KEGG: bcv:Bcav_3058 chaperonin Cpn10~PFAM: Chaperonin Cpn10~SPTR: D0WP39 Chaperonin groES~PFAM: Chaperonin 10 Kd subunit gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1327 Arch_1328 Arch_1328 Arch_1328 1470230 1471471 + conserved hypothetical protein KEGG: krh:KRH_06700 hypothetical protein~SPTR: D0WP40 Putative SAM-dependent methyltransferase gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1328 Arch_1329 Arch_1329 Arch_1329 1471557 1472663 - metalloendopeptidase%2C glycoprotease family COGs: COG0533 Metal-dependent protease with possible chaperone activity~InterPro IPR000905:IPR017861:IPR000408:IPR017860~KEGG: bcv:Bcav_3068 metalloendopeptidase%2C glycoprotease family~PFAM: peptidase M22 glycoprotease~PRIAM: O-sialoglycoprotein endopeptidase~SPTR: D0WP41 Putative glycoprotease GCP~TIGRFAM: metalloendopeptidase%2C glycoprotease family~PFAM: Glycoprotease family~TIGRFAM: metalloendopeptidase%2C putative%2C glycoprotease family gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1329 Arch_1330 Arch_1330 Arch_1330 1472731 1473474 - succinate dehydrogenase and fumarate reductase iron-sulfur protein COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit~InterProIPR017896:IPR001450:IPR012675:IPR012285:IPR 004489:IPR009051:IPR001041:IPR006058:IPR017900~KEGG: tfu:Tfu_2451 succinate dehydrogenase/fumarate reductase iron-sulfur subunit~PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~SPTR: D0WP49 Fumarate reductase%2C iron-sulfur protein~TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein~TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1330 Arch_1331 Arch_1331 Arch_1331 1473471 1475441 - succinate dehydrogenase or fumarate reductase%2C flavoprotein subunit COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit~InterPro IPR003953:IPR004112:IPR011280:IPR015939~KEGG: nca:Noca_3552 succinate dehydrogenase flavoprotein subunit~PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein~PRIAM: Succinate dehydrogenase~SPTR: A7B9J2 Putative uncharacterized protein~TIGRFAM: succinate dehydrogenase or fumarate reductase%2C flavoprotein subunit~PFAM: domain%3B FAD binding domain~TIGRFAM: succinate dehydrogenase or fumarate reductase%2C flavoprotein subunit%2C Bacillus subtilis subgroup gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1331 Arch_1332 Arch_1332 Arch_1332 1475453 1476229 - succinate dehydrogenase (or fumarate reductase) cytochrome b subunit%2C b558 family InterPro IPR011138~KEGG: tfu:Tfu_2453 succinate dehydrogenase subunit C~SPTR: D0WP51 Succinate dehydrogenase subunit~TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit%2C b558 family~TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit%2C b558 family gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1332 Arch_1333 Arch_1333 Arch_1333 1476358 1476849 - GCN5-related N-acetyltransferase COGs: COG0456 Acetyltransferase~InterPro IPR000182:IPR016181~KEGG: bcv:Bcav_3070 ribosomal-protein-alanine acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: D0WP52 Ribosomal-protein-alanine acetyltransferase~PFAM: Acetyltransferase (GNAT) family gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1333 Arch_1334 Arch_1334 Arch_1334 1476849 1477559 - peptidase M22 glycoprotease COGs: COG1214 Inactive homolog of metal-dependent protease putative molecular chaperone~InterPro IPR000905~KEGG: xce:Xcel_0675 peptidase M22 glycoprotease~PFAM: peptidase M22 glycoprotease~SPTR: D0WP53 Universal bacterial protein YeaZ~PFAM: Glycoprotease family gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1334 Arch_1335 Arch_1335 Arch_1335 1477564 1478433 - hypothetical protein KEGG: dps:DP3064 hypothetical protein~SPTR: D0WP54 50S ribosomal protein L12P gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1335 Arch_1336 Arch_1336 Arch_1336 1478430 1478963 - protein of unknown function UPF0079 COGs: COG0802 ATPase or kinase~InterPro IPR003442~KEGG: xce:Xcel_0674 protein of unknown function UPF0079~PFAM: protein of unknown function UPF0079~SPTR: D0WP55 ATP/GTP hydrolase~PFAM: Uncharacterised P-loop hydrolase UPF0079~TIGRFAM: conserved hypothetical nucleotide-binding protein gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1336 Arch_1337 Arch_1337 Arch_1337 1478995 1480119 - alanine racemase COGs: COG0787 Alanine racemase~InterProIPR001608:IPR011079:IPR000821:IPR009006:IPR 020622~KEGG: bcv:Bcav_3073 alanine racemase~PFAM: alanine racemase domain protein~PRIAM: Alanine racemase~SPTR: D0WP56 Alanine racemase~TIGRFAM: alanine racemase~PFAM: Alanine racemase%2C C-terminal domain%3B Alanine racemase%2C N-terminal domain~TIGRFAM: alanine racemase gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1337 Arch_1338 Arch_1338 Arch_1338 1480112 1480963 - protein of unknown function UPF0031 COGs: COG0063 sugar kinase~InterPro IPR000631~KEGG: bcv:Bcav_3074 carbohydrate kinase%2C YjeF related protein~PFAM: protein of unknown function UPF0031~SPTR: C5BZY8 Carbohydrate kinase%2C YjeF related protein~PFAM: Carbohydrate kinase~TIGRFAM: yjeF C-terminal region%2C hydroxyethylthiazole kinase-related gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1338 Arch_1339 Arch_1339 Arch_1339 1480975 1482831 - glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains~InterPro IPR017932:IPR000583:IPR001347:IPR005855~KEGG: jde:Jden_0623 glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing~PFAM: sugar isomerase (SIS)%3B glutamine amidotransferase class-II~SPTR: D0WP58 Glutamine-fructose-6-phosphate transaminase~TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing~PFAM: SIS domain%3B Glutamine amidotransferases class-II~TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1339 Arch_1340 Arch_1340 Arch_1340 1482989 1483930 + pantothenate kinase COGs: COG1072 Panthothenate kinase~InterPro IPR004566~KEGG: xce:Xcel_0666 pantothenate kinase~SPTR: A7B9K0 Putative uncharacterized protein~TIGRFAM: pantothenate kinase~PFAM: Phosphoribulokinase / Uridine kinase family~TIGRFAM: pantothenate kinase%2C bacterial type gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1340 Arch_1341 Arch_1341 Arch_1341 1484050 1485381 - phosphoglucosamine mutase COGs: COG1109 Phosphomannomutase~InterProIPR005844:IPR005845:IPR005846:IPR005843:IPR 016055:IPR006352:IPR005841~KEGG: blt:Balat_1326 phosphomannomutase~PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III%3B phosphoglucomutase/phosphomannomutase~SPTR: D0WP66 Phosphoglucosamine mutase~TIGRFAM: phosphoglucosamine mutase~PFAM: Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain II%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III%3B Phosphoglucomutase/phosphomannomutase%2C C-terminal domain%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain I~TIGRFAM: phosphoglucosamine mutase gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1341 Arch_1342 Arch_1342 Arch_1342 1485568 1486053 - ribosomal protein S9 COGs: COG0103 Ribosomal protein S9~InterPro IPR000754:IPR014721:IPR020568:IPR020574~KEGG: xce:Xcel_0662 ribosomal protein S9~PFAM: ribosomal protein S9~SPTR: A7B9L2 30S ribosomal protein S9~PFAM: Ribosomal protein S9/S16 gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1342 Arch_1343 Arch_1343 Arch_1343 1486084 1486566 - ribosomal protein L13 COGs: COG0102 Ribosomal protein L13~InterPro IPR005822:IPR005823~KEGG: krh:KRH_06460 50S ribosomal protein L13~PFAM: ribosomal protein L13~SPTR: C1RK38 50S ribosomal protein L13~TIGRFAM: ribosomal protein L13~PFAM: Ribosomal protein L13~TIGRFAM: ribosomal protein L13%2C bacterial type gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1343 Arch_1344 Arch_1344 Arch_1344 1486791 1487672 - tRNA pseudouridine synthase A COGs: COG0101 Pseudouridylate synthase~InterProIPR001406:IPR020097:IPR020094:IPR020095:IPR 020103~KEGG: bfa:Bfae_23260 pseudouridylate synthase I~PFAM: Pseudouridine synthase I%2C TruA%2C alpha/beta domain~PRIAM: tRNA-pseudouridine synthase I~SPTR: D0WP76 tRNA pseudouridine synthase A~TIGRFAM: tRNA pseudouridine synthase A~PFAM: tRNA pseudouridine synthase~TIGRFAM: pseudouridylate synthase I gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1344 Arch_1345 Arch_1345 Arch_1345 1487671 1488468 + ROK family protein InterPro IPR000600~KEGG: xce:Xcel_0657 ROK family protein~PFAM: ROK family protein~SPTR: D0WP77 ROK protein~manually curated~PFAM: ROK family gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1345 Arch_1346 Arch_1346 Arch_1346 1488600 1488830 + hypothetical protein KEGG: hypothetical protein~SPTR: Q55C46 Putative uncharacterized protein gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1346 Arch_1347 Arch_1347 Arch_1347 1488931 1489428 - ribosomal protein L17 COGs: COG0203 Ribosomal protein L17~InterPro IPR000456~KEGG: xce:Xcel_0655 ribosomal protein L17~PFAM: ribosomal protein L17~SPTR: D0WP86 Ribosomal protein L17~TIGRFAM: ribosomal protein L17~PFAM: Ribosomal protein L17~TIGRFAM: ribosomal protein L17 gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1347 Arch_1348 Arch_1348 Arch_1348 1489464 1490468 - DNA-directed RNA polymerase%2C alpha subunit COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit~InterProIPR011261:IPR011262:IPR011260:IPR011773:IPR 011263:IPR009025~KEGG: tcu:Tcur_4290 DNA-directed RNA polymerase%2C alpha subunit~PFAM: RNA polymerase insert%3B RNA polymerase dimerisation%3B RNA polymerase alpha subunit domain protein~SMART: RNA polymerase RpoA/D/Rpb3-type~SPTR: D0WP87 DNA-directed RNA polymerase%2C alpha subunit~TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit~PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain%3B RNA polymerase Rpb3/RpoA insert domain%3B Bacterial RNA polymerase%2C alpha chain C terminal domain~TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit%2C bacterial and chloroplast-type gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1348 Arch_1349 Arch_1349 Arch_1349 1490602 1490994 - 30S ribosomal protein S11 COGs: COG0100 Ribosomal protein S11~InterPro IPR001971:IPR019981:IPR018102~KEGG: cdi:DIP0547 30S ribosomal protein S11~PFAM: ribosomal protein S11~SPTR: D0WP88 30S ribosomal protein S11~TIGRFAM: 30S ribosomal protein S11~PFAM: Ribosomal protein S11~TIGRFAM: 30S ribosomal protein S11 gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1349 Arch_1350 Arch_1350 Arch_1350 1491047 1491421 - 30S ribosomal protein S13 COGs: COG0099 Ribosomal protein S13~InterPro IPR001892:IPR019980:IPR010979:IPR018269~KEGG: cai:Caci_0961 ribosomal protein S13~PFAM: ribosomal protein S13~SPTR: C0W6F2 30S ribosomal protein~TIGRFAM: 30S ribosomal protein S13~PFAM: Ribosomal protein S13/S18~TIGRFAM: 30S ribosomal protein S13 gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1350 Arch_1351 Arch_1351 Arch_1351 1491542 1491655 - ribosomal protein L36 InterPro IPR000473~KEGG: sma:SAV_4950 50S ribosomal protein L36~PFAM: ribosomal protein L36~SPTR: C0W6F1 50S ribosomal protein L36~TIGRFAM: ribosomal protein L36~manually curated~PFAM: Ribosomal protein L36~TIGRFAM: ribosomal protein L36%2C bacterial type gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1351 Arch_1352 Arch_1352 Arch_1352 1491714 1491935 - translation initiation factor IF-1 COGs: COG0361 Translation initiation factor 1 (IF-1)~InterPro IPR006196:IPR012340:IPR004368:IPR016027~KEGG: rmu:RMDY18_05040 translation initiation factor 1~PFAM: S1 IF1 family protein~SPTR: D0WP91 Translation initiation factor IF-1~TIGRFAM: translation initiation factor IF-1~PFAM: Translation initiation factor 1A / IF-1~TIGRFAM: translation initiation factor IF-1 gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1352 Arch_1353 Arch_1353 Arch_1353 1492156 1492452 - conserved hypothetical protein COGs: COG2440 Ferredoxin-like protein~InterPro IPR012206:IPR017896~KEGG: dsy:DSY3795 hypothetical protein~SPTR: D0WNZ6 Ferredoxin gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1353 Arch_1354 Arch_1354 Arch_1354 1492452 1493753 - Electron-transferring-flavoproteindehydrogenase COGs: COG0644 Dehydrogenase (flavoprotein)~InterPro IPR006076:IPR003042~KEGG: pac:PPA2212 putative electron transfer flavoprotein-quinone oxidoreductase (FixC protein)~PFAM: FAD dependent oxidoreductase~PRIAM: Electron-transferring-flavoprotein dehydrogenase~SPTR: D0WNZ7 FixC protein~PFAM: FAD dependent oxidoreductase gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1354 Arch_1355 Arch_1355 Arch_1355 1493750 1494619 - Electron transfer flavoprotein alpha subunit COGs: COG2025 Electron transfer flavoprotein alpha subunit~InterPro IPR001308:IPR014731~KEGG: pac:PPA2213 putative electron transfer flavoprotein%2C carnitine metabolism (FixB protein)~PFAM: Electron transfer flavoprotein alpha subunit~SPTR: D0WNZ8 Electron transfer flavoprotein%2C alpha subunit~PFAM: Electron transfer flavoprotein domain%3B Electron transfer flavoprotein FAD-binding domain gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1355 Arch_1356 Arch_1356 Arch_1356 1494655 1495416 - Electron transfer flavoprotein alpha/beta-subunit COGs: COG2086 Electron transfer flavoprotein beta subunit~InterPro IPR012255:IPR014730:IPR014729~KEGG: pac:PPA2214 putative electron transfer flavoprotein (FixA protein)~PFAM: Electron transfer flavoprotein alpha/beta-subunit~SPTR: D0WNZ9 Putative electron transfer flavoprotein~PFAM: Electron transfer flavoprotein domain gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1356 Arch_1357 Arch_1357 Arch_1357 1495508 1496122 + transcriptional regulator%2C TetR family InterPro IPR001647:IPR012287:IPR009057~KEGG: tfu:Tfu_1467 hypothetical protein~PFAM: regulatory protein TetR~SPTR: D0WP01 Transcriptional regulatory protein%2C TetR family~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1357 Arch_1358 Arch_1358 Arch_1358 1496119 1496748 - beta-lactamase domain protein COGs: COG0491 Zn-dependent hydrolase including glyoxylase~KEGG: pmx:PERMA_1508 beta-lactamase domain protein~SPTR: D0WP02 Metallo-beta-lactamase family protein~PFAM: Metallo-beta-lactamase superfamily gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1358 Arch_1359 Arch_1359 Arch_1359 1496752 1498068 - General substrate transporter COGs: COG2814 Arabinose efflux permease~InterPro IPR005828:IPR016196:IPR002345:IPR005829~KEGG: drm:Dred_0578 general substrate transporter~PFAM: General substrate transporter~SPTR: A4J217 General substrate transporter~PFAM: Sugar (and other) transporter gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1359 Arch_1360 Arch_1360 Arch_1360 1498135 1499010 - 3-alpha%2C7-alpha%2C12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase InterPro IPR002539~KEGG: drm:Dred_0577 dehydratase~PFAM: MaoC domain protein dehydratase~PRIAM:3-alpha%2C7-alpha%2C12-alpha-trihydroxy-5-beta-ch olest-24-enoyl-CoAhydratase~SPTR: D0WP03 Putative MaoC like domain protein~PFAM: MaoC like domain gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1360 Arch_1361 Arch_1361 Arch_1361 1499028 1500530 - AMP-dependent synthetase and ligase COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II~InterPro IPR000873:IPR017871~KEGG: ele:Elen_1832 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase and ligase~SPTR: D0WP04 CoA ligase~PFAM: AMP-binding enzyme gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1361 Arch_1362 Arch_1362 Arch_1362 1500556 1501764 - L-carnitine dehydratase/bile acid-inducible protein F COGs: COG1804 acyl-CoA transferase/carnitine dehydratase~InterPro IPR003673~KEGG: ele:Elen_1833 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: L-carnitine dehydratase/bile acid-inducible protein F~SPTR: D0WP05 Crotonobetainyl-CoA:carnitine CoA-transferase~PFAM: CoA-transferase family III gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1362 Arch_1363 Arch_1363 Arch_1363 1501774 1502907 - acyl-CoA dehydrogenase domain protein COGs: COG1960 Acyl-CoA dehydrogenase~InterProIPR006092:IPR006091:IPR006090:IPR013786:IPR 013764:IPR009100:IPR009075~KEGG: drm:Dred_0570 crotonobetainyl-CoA dehydrogenase~PFAM: acyl-CoA dehydrogenase domain protein~SPTR: D0WP06 Crotonobetainyl-CoA dehydrogenase~PFAM: Acyl-CoA dehydrogenase%2C C-terminal domain%3B Acyl-CoA dehydrogenase%2C middle domain%3B Acyl-CoA dehydrogenase%2C N-terminal domain gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1363 Arch_1364 Arch_1364 Arch_1364 1502935 1503897 - Alpha/beta hydrolase fold-3 domain protein COGs: COG0657 Esterase/lipase~InterPro IPR013094:IPR002168~KEGG: ele:Elen_1835 alpha/beta hydrolase fold-3 domain protein~PFAM: Alpha/beta hydrolase fold-3 domain protein~SPTR: D0WP07 Acetyl esterase~PFAM: alpha/beta hydrolase fold gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1364 Arch_1365 Arch_1365 Arch_1365 1503909 1505186 - major facilitator superfamily MFS_1 COGs: COG2271 Sugar phosphate permease~InterPro IPR011701:IPR016196~KEGG: ele:Elen_1836 major facilitator superfamily MFS_1~PFAM: major facilitator superfamily MFS_1~SPTR: D0WP08 Transporter%2C major facilitator family~PFAM: Major Facilitator Superfamily gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1365 Arch_1366 Arch_1366 Arch_1366 1505511 1506344 - methionine aminopeptidase%2C type I COGs: COG0024 Methionine aminopeptidase~InterPro IPR000994:IPR002467:IPR001714~KEGG: mlu:Mlut_16950 methionine aminopeptidase%2C type I~PFAM: peptidase M24~PRIAM: Methionyl aminopeptidase~SPTR: D0WPA8 Methionine aminopeptidase%2C type I~TIGRFAM: methionine aminopeptidase%2C type I~PFAM: Metallopeptidase family M24~TIGRFAM: methionine aminopeptidase%2C type I gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1366 Arch_1367 Arch_1367 Arch_1367 1506417 1507001 - adenylate kinase COGs: COG0563 Adenylate kinase and related kinase~InterPro IPR000850:IPR006259~KEGG: mlu:Mlut_16960 adenylate kinase~PFAM: adenylate kinase~SPTR: P33107 Adenylate kinase~TIGRFAM: adenylate kinase~PFAM: Adenylate kinase~TIGRFAM: adenylate kinases gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1367 Arch_1368 Arch_1368 Arch_1368 1506998 1508284 - preprotein translocase%2C SecY subunit COGs: COG0201 Preprotein translocase subunit SecY~InterPro IPR002208~KEGG: xce:Xcel_0647 preprotein translocase%2C SecY subunit~PFAM: SecY protein~SPTR: D0WPB0 Preprotein translocase%2C SecY subunit~TIGRFAM: preprotein translocase%2C SecY subunit~PFAM: eubacterial secY protein~TIGRFAM: preprotein translocase%2C SecY subunit gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1368 Arch_1369 Arch_1369 Arch_1369 1508540 1508986 - ribosomal protein L15 COGs: COG0200 Ribosomal protein L15~InterPro IPR001196:IPR005749~KEGG: rmu:RMDY18_04990 ribosomal protein L15~PFAM: ribosomal protein L15~SPTR: C6R3K6 50S ribosomal protein L15~TIGRFAM: ribosomal protein L15~PFAM: Ribosomal protein L18e/L15~TIGRFAM: ribosomal protein L15%2C bacterial/organelle gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1369 Arch_1370 Arch_1370 Arch_1370 1508986 1509168 - ribosomal protein L30 COGs: COG1841 Ribosomal protein L30/L7E~InterPro IPR005996:IPR000517:IPR016082:IPR018038~KEGG: sen:SACE_6818 50S ribosomal protein L30~PFAM: ribosomal protein L30~SPTR: A4FPK7 50S ribosomal protein L30~TIGRFAM: ribosomal protein L30~PFAM: Ribosomal protein L30p/L7e~TIGRFAM: ribosomal protein L30%2C bacterial/organelle gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1370 Arch_1371 Arch_1371 Arch_1371 1509165 1509872 - ribosomal protein S5 COGs: COG0098 Ribosomal protein S5~InterProIPR013810:IPR005324:IPR014720:IPR014721:IPR 005712:IPR020568:IPR018192~KEGG: xce:Xcel_0644 ribosomal protein S5~PFAM: ribosomal protein S5 domain protein%3B Ribosomal protein S5~SPTR: D0WPB3 Ribosomal protein S5~TIGRFAM: ribosomal protein S5~PFAM: Ribosomal protein S5%2C N-terminal domain%3B Ribosomal protein S5%2C C-terminal domain~TIGRFAM: ribosomal protein S5%2C bacterial/organelle type gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1371 Arch_1372 Arch_1372 Arch_1372 1509898 1510269 - ribosomal protein L18 COGs: COG0256 Ribosomal protein L18~InterPro IPR005484:IPR004389~KEGG: xce:Xcel_0643 ribosomal protein L18~PFAM: ribosomal protein L18P/L5E~SPTR: D0WPB4 Ribosomal protein L18~TIGRFAM: ribosomal protein L18~PFAM: Ribosomal L18p/L5e family~TIGRFAM: ribosomal protein L18%2C bacterial type gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1372 Arch_1373 Arch_1373 Arch_1373 1510269 1510805 - ribosomal protein L6 COGs: COG0097 Ribosomal protein L6P/L9E~InterPro IPR000702:IPR020040:IPR019906:IPR002358~KEGG: art:Arth_2961 50S ribosomal protein L6P~PFAM: Ribosomal protein L6%2C alpha-beta domain~SPTR: A0JZ70 50S ribosomal protein L6~TIGRFAM: ribosomal protein L6~PFAM: Ribosomal protein L6~TIGRFAM: ribosomal protein L6%2C bacterial type gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1373 Arch_1374 Arch_1374 Arch_1374 1510821 1511219 - ribosomal protein S8 COGs: COG0096 Ribosomal protein S8~InterPro IPR000630~KEGG: kra:Krad_0702 ribosomal protein S8~PFAM: ribosomal protein S8~SPTR: D0WPB6 Ribosomal protein S8~PFAM: Ribosomal protein S8 gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1374 Arch_1375 Arch_1375 Arch_1375 1511275 1511460 - ribosomal protein S14 COGs: COG0199 Ribosomal protein S14~InterPro IPR001209:IPR018271~KEGG: pac:PPA1849 30S ribosomal protein S14~PFAM: ribosomal protein S14~SPTR: C2BS70 30S ribosomal protein S14~PFAM: Ribosomal protein S14p/S29e gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1375 Arch_1376 Arch_1376 Arch_1376 1511466 1512023 - ribosomal protein L5 COGs: COG0094 Ribosomal protein L5~InterPro IPR002132~KEGG: sgr:SGR_2822 50S ribosomal protein L5~PFAM: ribosomal protein L5~SPTR: C9N616 Ribosomal protein L5~PFAM: ribosomal L5P family C-terminus%3B Ribosomal protein L5 gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1376 Arch_1377 Arch_1377 Arch_1377 1512020 1512364 - ribosomal protein L24 COGs: COG0198 Ribosomal protein L24~InterPro IPR005824:IPR003256:IPR008991:IPR005825~KEGG: bcv:Bcav_3132 ribosomal protein L24~PFAM: KOW domain protein~SMART: KOW domain protein~SPTR: D0WPB9 Ribosomal protein L24~TIGRFAM: ribosomal protein L24~PFAM: KOW motif~TIGRFAM: ribosomal protein L24%2C bacterial/organelle gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1377 Arch_1378 Arch_1378 Arch_1378 1512368 1512736 - ribosomal protein L14 COGs: COG0093 Ribosomal protein L14~InterPro IPR000218:IPR005745:IPR019972~KEGG: mgi:Mflv_5037 ribosomal protein L14~PFAM: ribosomal protein L14b/L23e~SPTR: C0VZ19 50S ribosomal protein L14~TIGRFAM: ribosomal protein L14~PFAM: Ribosomal protein L14p/L23e~TIGRFAM: ribosomal protein L14%2C bacterial/organelle gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1378 Arch_1379 Arch_1379 Arch_1379 1512828 1513112 - 30S ribosomal protein S17 COGs: COG0186 Ribosomal protein S17~InterProIPR000266:IPR012340:IPR019984:IPR016027:IPR 019979~KEGG: gbr:Gbro_3749 30S ribosomal protein S17~PFAM: ribosomal protein S17~SPTR: D0WPC1 30S ribosomal protein S17~TIGRFAM: 30S ribosomal protein S17~PFAM: Ribosomal protein S17~TIGRFAM: 30S ribosomal protein S17 gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1379 Arch_1380 Arch_1380 Arch_1380 1513121 1513354 - ribosomal protein L29 InterPro IPR001854~KEGG: bcv:Bcav_3135 ribosomal protein L29~PFAM: ribosomal protein L29~SPTR: D0WPC2 Ribosomal protein L29~TIGRFAM: ribosomal protein L29~PFAM: Ribosomal L29 protein~TIGRFAM: ribosomal protein L29 gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1380 Arch_1381 Arch_1381 Arch_1381 1513351 1513767 - ribosomal protein L16 COGs: COG0197 Ribosomal protein L16/L10E~InterPro IPR016180:IPR000114:IPR020798~KEGG: xce:Xcel_0634 ribosomal protein L16~PFAM: Ribosomal protein L10e/L16~SPTR: D0WPC3 Ribosomal protein L16~TIGRFAM: ribosomal protein L16~PFAM: Ribosomal protein L16p/L10e~TIGRFAM: ribosomal protein L16%2C bacterial/organelle gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1381 Arch_1382 Arch_1382 Arch_1382 1513773 1514597 - ribosomal protein S3 COGs: COG0092 Ribosomal protein S3~InterProIPR004044:IPR008282:IPR001351:IPR015946:IPR 005704:IPR004087:IPR009019:IPR018280~KEGG: bfa:Bfae_23750 SSU ribosomal protein S3P~PFAM: ribosomal protein S3- domain protein%3B KH type 2 domain protein%3B Ribosomal protein S3 domain~SMART: KH domain protein~SPTR: D0WPC4 Ribosomal protein S3~TIGRFAM: ribosomal protein S3~PFAM: KH domain%3B Ribosomal protein S3%2C C-terminal domain%3B Ribosomal protein S3%2C N-terminal domain~TIGRFAM: ribosomal protein S3%2C bacterial type gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1382 Arch_1383 Arch_1383 Arch_1383 1514600 1514959 - ribosomal protein L22 COGs: COG0091 Ribosomal protein L22~InterPro IPR001063:IPR005727:IPR018260~KEGG: xce:Xcel_0632 ribosomal protein L22~PFAM: ribosomal protein L22/L17~SPTR: A7B9N9 50S ribosomal protein L22~TIGRFAM: ribosomal protein L22~PFAM: Ribosomal protein L22p/L17e~TIGRFAM: ribosomal protein L22%2C bacterial type gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1383 Arch_1384 Arch_1384 Arch_1384 1514987 1515268 - ribosomal protein S19 COGs: COG0185 Ribosomal protein S19~InterPro IPR002222:IPR005732~KEGG: xce:Xcel_0631 ribosomal protein S19~PFAM: ribosomal protein S19/S15~SPTR: D0WPC6 Ribosomal protein S19~TIGRFAM: ribosomal protein S19~PFAM: Ribosomal protein S19~TIGRFAM: ribosomal protein S19%2C bacterial/organelle gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1384 Arch_1385 Arch_1385 Arch_1385 1515286 1516122 - ribosomal protein L2 COGs: COG0090 Ribosomal protein L2~InterProIPR002171:IPR012340:IPR014722:IPR005880:IPR 008991:IPR016027~KEGG: jde:Jden_0590 ribosomal protein L2~PFAM: ribosomal protein L2~SPTR: C7R0U7 Ribosomal protein L2~TIGRFAM: ribosomal protein L2~PFAM: Ribosomal Proteins L2%2C RNA binding domain%3B Ribosomal Proteins L2%2C C-terminal domain~TIGRFAM: ribosomal protein L2%2C bacterial/organellar gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1385 Arch_1386 Arch_1386 Arch_1386 1516152 1516466 - Ribosomal protein L25/L23 COGs: COG0089 Ribosomal protein L23~InterPro IPR013025:IPR012677:IPR012678~KEGG: jde:Jden_0589 ribosomal protein L25/L23~PFAM: Ribosomal protein L25/L23~SPTR: D0WPC8 Ribosomal protein L23~PFAM: Ribosomal protein L23 gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1386 Arch_1387 Arch_1387 Arch_1387 1516463 1517110 - ribosomal protein L4/L1e COGs: COG0088 Ribosomal protein L4~InterPro IPR002136~KEGG: xce:Xcel_0628 ribosomal protein L4/L1e~PFAM: ribosomal protein L4/L1e~SPTR: D0WPC9 Ribosomal protein L4/L1 family protein~PFAM: Ribosomal protein L4/L1 family gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1387 Arch_1388 Arch_1388 Arch_1388 1517116 1517784 - 50S ribosomal protein L3 COGs: COG0087 Ribosomal protein L3~InterPro IPR000597:IPR019927:IPR009000:IPR019926~KEGG: jde:Jden_0587 ribosomal protein L3~PFAM: ribosomal protein L3~SPTR: D0WPD0 50S ribosomal protein L3~TIGRFAM: 50S ribosomal protein L3~PFAM: Ribosomal protein L3~TIGRFAM: 50S ribosomal protein L3%2C bacterial gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1388 Arch_1389 Arch_1389 Arch_1389 1517798 1518106 - ribosomal protein S10 COGs: COG0051 Ribosomal protein S10~InterPro IPR001848:IPR005731:IPR018268~KEGG: kse:Ksed_20880 SSU ribosomal protein S10P~PFAM: ribosomal protein S10~SPTR: D0WPD1 Ribosomal protein S10~TIGRFAM: ribosomal protein S10~PFAM: Ribosomal protein S10p/S20e~TIGRFAM: ribosomal protein S10%2C bacterial/organelle gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1389 Arch_1390 Arch_1390 Arch_1390 1518429 1519619 - translation elongation factor Tu COGs: COG0050 GTPase - translation elongation factors~InterProIPR000795:IPR004161:IPR004160:IPR004541:IPR 005225:IPR009001:IPR009000~KEGG: krh:KRH_06140 elongation factor Tu~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein%3B elongation factor Tu domain protein~SPTR: D0WPD5 Translation elongation factor Tu~TIGRFAM: translation elongation factor Tu%3B small GTP-binding protein~PFAM: Elongation factor Tu domain 2%3B Elongation factor Tu C-terminal domain%3B Elongation factor Tu GTP binding domain~TIGRFAM: small GTP-binding protein domain%3B translation elongation factor TU gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1390 Arch_1391 Arch_1391 Arch_1391 1519744 1521864 - translation elongation factor G COGs: COG0480 Translation elongation factors (GTPase)~InterProIPR000795:IPR004161:IPR005517:IPR000640:IPR 014721:IPR004540:IPR005225:IPR020568:IPR009000:IPR009022~KEGG: bcv:Bcav_3146 translation elongation factor G~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein%3B elongation factor G domain IV%3B elongation factor G domain protein~SPTR: D0WPD6 Translation elongation factor G~TIGRFAM: translation elongation factor G%3B small GTP-binding protein~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B Elongation factor G%2C domain IV~TIGRFAM: translation elongation factor EF-G%3B small GTP-binding protein domain gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1391 Arch_1392 Arch_1392 Arch_1392 1521908 1522378 - ribosomal protein S7 COGs: COG0049 Ribosomal protein S7~InterPro IPR000235:IPR005717~KEGG: xce:Xcel_0623 ribosomal protein S7~PFAM: ribosomal protein S7~SPTR: D0WPD7 Ribosomal protein S7~TIGRFAM: ribosomal protein S7~PFAM: Ribosomal protein S7p/S5e~TIGRFAM: ribosomal protein S7%2C bacterial/organelle gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1392 Arch_1393 Arch_1393 Arch_1393 1522378 1522752 - ribosomal protein S12 COGs: COG0048 Ribosomal protein S12~InterPro IPR006032:IPR012340:IPR005679:IPR016027~KEGG: ace:Acel_0301 30S ribosomal protein S12~PFAM: ribosomal protein S12/S23~SPTR: D0WPD8 Ribosomal protein S12~TIGRFAM: ribosomal protein S12~PFAM: Ribosomal protein S12~TIGRFAM: ribosomal protein S12%2C bacterial/organelle gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1393 Arch_1394 Arch_1394 Arch_1394 1523065 1524393 - conserved hypothetical protein KEGG: cdi:DIP2121 hypothetical protein~SPTR: D0WPQ4 PAS/PAC domain protein~TIGRFAM: PAS domain S-box gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1394 Arch_1395 Arch_1395 Arch_1395 1524478 1528455 - DNA-directed RNA polymerase%2C beta' subunit COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit~InterProIPR007080:IPR000722:IPR007066:IPR007083:IPR 007081:IPR012754:IPR006592~KEGG: bcv:Bcav_3154 DNA-directed RNA polymerase%2C beta' subunit~PFAM: RNA polymerase Rpb1 domain 1%3B RNA polymerase alpha subunit%3B RNA polymerase Rpb1 domain 3%3B RNA polymerase Rpb1 domain 4%3B RNA polymerase Rpb1 domain 5~SMART: RNA polymerase I subunit A domain protein~SPTR: D0WPE0 DNA-directed RNA polymerase%2C beta subunit~TIGRFAM: DNA-directed RNA polymerase%2C beta' subunit~PFAM: RNA polymerase Rpb1%2C domain 2%3B RNA polymerase Rpb1%2C domain 4%3B RNA polymerase Rpb1%2C domain 1%3B RNA polymerase Rpb1%2C domain 3%3B RNA polymerase Rpb1%2C domain 5~TIGRFAM: DNA-directed RNA polymerase%2C beta' subunit%2C predominant form gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1395 Arch_1396 Arch_1396 Arch_1396 1528547 1532011 - DNA-directed RNA polymerase%2C beta subunit COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit~InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243:IPR007121~KEGG: xce:Xcel_0620 DNA-directed RNA polymerase%2C beta subunit~PFAM: RNA polymerase Rpb2 domain 6%3B RNA polymerase Rpb2 domain 3%3B RNA polymerase beta subunit%3B RNA polymerase Rpb2 domain 2%3B DNA-directed RNA polymerase%2C beta subunit%2C external 1 domain%3B RNA polymerase Rpb2 domain 7~SPTR: D0WPE1 DNA-directed RNA polymerase%2C beta subunit~TIGRFAM: DNA-directed RNA polymerase%2C beta subunit~PFAM: RNA polymerase Rpb2%2C domain 3%3B RNA polymerase Rpb2%2C domain 6%3B RNA polymerase beta subunit external 1 domain%3B RNA polymerase Rpb2%2C domain 2%3B RNA polymerase beta subunit%3B RNA polymerase Rpb2%2C domain 7~TIGRFAM: DNA-directed RNA polymerase%2C beta subunit gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1396 Arch_1397 Arch_1397 Arch_1397 1532498 1532881 - ribosomal protein L7/L12 COGs: COG0222 Ribosomal protein L7/L12~InterPro IPR013823:IPR014719:IPR000206:IPR008932~KEGG: mlu:Mlut_17260 LSU ribosomal protein L12P~PFAM: Ribosomal protein L7/L12~SPTR: C5CC72 50S ribosomal protein L7/L12~TIGRFAM: ribosomal protein L7/L12~PFAM: Ribosomal protein L7/L12 C-terminal domain~TIGRFAM: ribosomal protein L7/L12 gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1397 Arch_1398 Arch_1398 Arch_1398 1532945 1533469 - ribosomal protein L10 COGs: COG0244 Ribosomal protein L10~InterPro IPR001790:IPR002363~KEGG: pac:PPA1887 50S ribosomal protein L10~PFAM: ribosomal protein L10~SPTR: D0WPE6 Ribosomal protein L10~PFAM: Ribosomal protein L10 gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1398 Arch_1399 Arch_1399 Arch_1399 1533732 1534355 - uridine kinase COGs: COG0572 Uridine kinase~InterPro IPR006083:IPR000764:IPR017975~KEGG: cbt:CLH_0992 uridine kinase~PFAM: phosphoribulokinase/uridine kinase~SPTR: D0WPE8 Uridine kinase~TIGRFAM: uridine kinase~PFAM: Phosphoribulokinase / Uridine kinase family~TIGRFAM: uridine kinase gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1399 Arch_1400 Arch_1400 Arch_1400 1534703 1535404 - ribosomal protein L1 COGs: COG0081 Ribosomal protein L1~InterPro IPR002143:IPR016094:IPR005878~KEGG: jde:Jden_0577 ribosomal protein L1~PFAM: ribosomal protein L1~SPTR: C0W6A1 Ribosomal protein L1~TIGRFAM: ribosomal protein L1~PFAM: Ribosomal protein L1p/L10e family~TIGRFAM: ribosomal protein L1%2C bacterial/chloroplast gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1400 Arch_1401 Arch_1401 Arch_1401 1535509 1535943 - ribosomal protein L11 COGs: COG0080 Ribosomal protein L11~InterPro IPR020784:IPR020783:IPR006519:IPR000911~KEGG: jde:Jden_0576 ribosomal protein L11~PFAM: Ribosomal protein L11-like~SMART: ribosomal protein L11~SPTR: D0WPF6 Ribosomal protein L11~TIGRFAM: ribosomal protein L11~PFAM: Ribosomal protein L11%2C RNA binding domain%3B Ribosomal protein L11%2C N-terminal domain~TIGRFAM: 50S ribosomal protein L11 gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1401 Arch_1402 Arch_1402 Arch_1402 1536067 1536933 - NusG antitermination factor COGs: COG0250 Transcription antiterminator~InterPro IPR006645:IPR014722:IPR001062:IPR008991~KEGG: art:Arth_2995 NusG antitermination factor~PFAM: NGN domain protein~SMART: NGN domain protein~SPTR: D0WPF7 Transcription termination/antitermination factor NusG~TIGRFAM: transcription termination/antitermination factor NusG~PFAM: Transcription termination factor nusG~TIGRFAM: transcription termination/antitermination factor NusG gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1402 Arch_1403 Arch_1403 Arch_1403 1536967 1537212 - preprotein translocase%2C SecE subunit InterPro IPR001901:IPR005807~KEGG: aau:AAur_2967 preprotein translocase subunit SecE~PFAM: protein secE/sec61-gamma protein~SPTR: C2BUX9 Preprotein translocase subunit SecE~TIGRFAM: preprotein translocase%2C SecE subunit~PFAM: SecE/Sec61-gamma subunits of protein translocation complex~TIGRFAM: preprotein translocase%2C SecE subunit%2C bacterial gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1403 Arch_1404 Arch_1404 Arch_1404 1537541 1538746 + aminotransferase class I and II COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterProIPR004839:IPR015421:IPR015424:IPR001176:IPR 004838~KEGG: bcv:Bcav_3164 aminotransferase class I and II~PFAM: aminotransferase class I and II~SPTR: D0WPG0 Aspartate transaminase~PFAM: Aminotransferase class I and II gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1404 Arch_1405 Arch_1405 Arch_1405 1538828 1539109 - hypothetical protein KEGG: aav:Aave_2528 hydrophobe/amphiphile efflux-1 (HAE1) family protein~SPTR: C2B285 Putative uncharacterized protein gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1405 Arch_1406 Arch_1406 Arch_1406 1539613 1540812 + transposase IS116/IS110/IS902 family protein InterPro IPR002525:IPR003346~KEGG: mlu:Mlut_12160 transposase~PFAM: transposase IS116/IS110/IS902 family protein%3B transposase IS111A/IS1328/IS1533~SPTR: C0W956 Transposase%2C IS111A/IS1328/IS1533 (Fragment)~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1406 Arch_1407 Arch_1407 Arch_1407 1541049 1542308 - aminoglycoside phosphotransferase InterPro IPR002575:IPR011009~KEGG: jde:Jden_2348 aminoglycoside phosphotransferase~PFAM: aminoglycoside phosphotransferase~SPTR: D0WPG1 Phosphotransferase enzyme family protein~PFAM: Phosphotransferase enzyme family gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1407 Arch_1408 Arch_1408 Arch_1408 1542423 1543460 + adenosine deaminase COGs: COG1816 Adenosine deaminase~InterPro IPR001365:IPR006330:IPR013838:IPR006650~KEGG: bcv:Bcav_3173 adenosine deaminase~PFAM: adenosine/AMP deaminase~PRIAM: Adenosine deaminase~SPTR: D0WPG6 Adenosine deaminase~TIGRFAM: adenosine deaminase~PFAM: Adenosine/AMP deaminase~TIGRFAM: adenosine deaminase gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1408 Arch_1409 Arch_1409 Arch_1409 1543408 1544298 + alpha/beta hydrolase fold protein COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily)~InterPro IPR000073~KEGG: cmi:CMM_0030 putative hydrolase/acyltransferase~PFAM: alpha/beta hydrolase fold~SPTR: D1BAH6 Predicted hydrolase or acyltransferase of alpha/beta superfamily~PFAM: alpha/beta hydrolase fold gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1409 Arch_1410 Arch_1410 Arch_1410 1544295 1544945 + conserved hypothetical protein KEGG: ach:Achl_2847 hypothetical protein~SPTR: D1BAH5 Putative uncharacterized protein~PFAM: PGAP1-like protein gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1410 Arch_1411 Arch_1411 Arch_1411 1544942 1546120 - FAD linked oxidase domain protein COGs: COG0812 UDP-N-acetylmuramate dehydrogenase~InterProIPR016166:IPR006094:IPR011601:IPR016167:IPR 016169~KEGG: bcv:Bcav_3178 UDP-N-acetylmuramate dehydrogenase~PFAM: FAD linked oxidase domain protein%3B UDP-N-acetylenolpyruvoylglucosamine reductase domain protein~SPTR: D0WPG7 UDP-N-acetylmuramate dehydrogenase~PFAM: FAD binding domain%3B UDP-N-acetylenolpyruvoylglucosamine reductase%2C C-terminal domain~TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1411 Arch_1412 Arch_1412 Arch_1412 1546407 1546577 - ribosomal protein L33 COGs: COG0267 Ribosomal protein L33~InterPro IPR001705:IPR018264~KEGG: bcv:Bcav_3184 ribosomal protein L33~PFAM: ribosomal protein L33~SPTR: D0WPG8 Ribosomal protein L33~TIGRFAM: ribosomal protein L33~manually curated~PFAM: Ribosomal protein L33~TIGRFAM: ribosomal protein L33%2C bacterial type gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1412 Arch_1413 Arch_1413 Arch_1413 1547137 1547631 + protein of unknown function DUF520 COGs: COG1666 conserved hypothetical protein~InterPro IPR007551~KEGG: xce:Xcel_0508 protein of unknown function DUF520~PFAM: protein of unknown function DUF520~SPTR: D0WPG9 N-(5'phosphoribosyl)anthranilate isomerase~PFAM: Protein of unknown function (DUF520) gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1413 Arch_1414 Arch_1414 Arch_1414 1547824 1549206 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase~InterPro IPR013027:IPR000759~KEGG: bcv:Bcav_3195 ferredoxin--NADP(+) reductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~SPTR: D0WPH0 Ferredoxin--NADP reductase~PFAM: Pyridine nucleotide-disulphide oxidoreductase gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1414 Arch_1415 Arch_1415 Arch_1415 1549517 1550185 - ribosomal subunit interface protein COGs: COG1544 Ribosome-associated protein Y (PSrp-1)~InterPro IPR003489~KEGG: bcv:Bcav_1244 sigma 54 modulation protein/ribosomal protein S30EA~PFAM: sigma 54 modulation protein/ribosomal protein S30EA~SPTR: D0WPH1 S30AE family protein~TIGRFAM: ribosomal subunit interface protein~PFAM: Sigma 54 modulation protein / S30EA ribosomal protein~TIGRFAM: ribosomal subunit interface protein gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1415 Arch_1416 Arch_1416 Arch_1416 1550401 1551102 - phosphoribosyltransferase COGs: COG1040 amidophosphoribosyltransferase~InterPro IPR000836~KEGG: bcv:Bcav_1243 hypothetical protein~PFAM: phosphoribosyltransferase~SPTR: D0WPH2 Competence protein F~PFAM: Phosphoribosyl transferase domain gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1416 Arch_1417 Arch_1417 Arch_1417 1551108 1552787 - Lipoprotein LpqB%2C GerMN domain protein InterPro IPR019606:IPR018910~KEGG: bcv:Bcav_1242 lipoprotein LpqB~PFAM: Lipoprotein LpqB%2C GerMN domain%3B Lipoprotein LpqB%2C beta-propeller domain-like~SPTR: D0WPH3 Putative lipoprotein LpqB~PFAM: Lipoprotein LpqB beta-propeller domain%3B Sporulation and spore germination gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1417 Arch_1418 Arch_1418 Arch_1418 1552784 1554448 - integral membrane sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterProIPR005467:IPR003660:IPR003661:IPR003594:IPR 009082:IPR004358~KEGG: bcv:Bcav_1241 histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein~SPTR: D0WPH4 Sensor histidine kinase MtrB~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1418 Arch_1419 Arch_1419 Arch_1419 1554445 1555119 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867:IPR011006~KEGG: mva:Mvan_1752 two component transcriptional regulator~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver~SPTR: D0WPH5 DNA-binding response regulator~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1419 Arch_1420 Arch_1420 Arch_1420 1555154 1555600 - conserved hypothetical protein KEGG: bcv:Bcav_1215 hypothetical protein~SPTR: D0WPH8 Putative uncharacterized protein~manually curated~PFAM: Protein of unknown function (DUF3499) gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1420 Arch_1421 Arch_1421 Arch_1421 1555655 1556083 + conserved hypothetical protein KEGG: xce:Xcel_2545 hypothetical protein~SPTR: D0WPH9 Putative uncharacterized protein~manually curated gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1421 Arch_1422 Arch_1422 Arch_1422 1556037 1557506 - hypothetical protein KEGG: bcv:Bcav_1208 hypothetical protein~SPTR: D0WPI0 Putative uncharacterized protein gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1422 Arch_1423 Arch_1423 Arch_1423 1557503 1560421 - glycosyl transferase domain-containing protein COGs: COG1216 glycosyltransferase~KEGG: bcv:Bcav_1207 glycosyl transferase domain-containing protein~SPTR: D0WPI1 Putative glycosyl transferase domain protein gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1423 Arch_1424 Arch_1424 Arch_1424 1560430 1560762 - transcription factor WhiB InterPro IPR003482~KEGG: ace:Acel_0457 transcription factor WhiB~PFAM: transcription factor WhiB~SPTR: D0WPI2 Transcription factor WhiB~PFAM: Transcription factor WhiB gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1424 Arch_1425 Arch_1425 Arch_1425 1560971 1561618 + hypothetical protein KEGG: xce:Xcel_2550 hypothetical protein~SPTR: D1BWZ7 Putative uncharacterized protein~TIGRFAM: conserved hypothetical protein TIGR03089 gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1425 Arch_1426 Arch_1426 Arch_1426 1561676 1562833 + cell envelope-related transcriptional attenuator COGs: COG1316 Transcriptional regulator~InterPro IPR004474~KEGG: bcv:Bcav_1166 cell envelope-related protein transcriptional attenuator~PFAM: cell envelope-related transcriptional attenuator~SPTR: C0W8B2 Transcriptional regulator~TIGRFAM: cell envelope-related function transcriptional attenuator%2C LytR/CpsA family~PFAM: Cell envelope-related transcriptional attenuator domain~TIGRFAM: cell envelope-related function transcriptional attenuator common domain gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1426 Arch_1427 Arch_1427 Arch_1427 1562851 1564203 + cell envelope-related transcriptional attenuator COGs: COG1316 Transcriptional regulator~InterPro IPR004474~KEGG: bcv:Bcav_1165 cell envelope-related protein transcriptional attenuator~PFAM: cell envelope-related transcriptional attenuator~SPTR: D0WPL0 Transcriptional regulator~TIGRFAM: cell envelope-related function transcriptional attenuator%2C LytR/CpsA family~PFAM: Cell envelope-related transcriptional attenuator domain~TIGRFAM: cell envelope-related function transcriptional attenuator common domain gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1427 Arch_1428 Arch_1428 Arch_1428 1564205 1565521 - integral membrane sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterProIPR005467:IPR003660:IPR003661:IPR003594:IPR 009082:IPR004358~KEGG: bcv:Bcav_1156 histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SPTR: D0WPL5 Putative two-component system histidine kinase~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1428 Arch_1429 Arch_1429 Arch_1429 1565544 1566224 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867:IPR011006~KEGG: bcv:Bcav_1155 two component transcriptional regulator%2C winged helix family~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver~SPTR: A7B947 Putative uncharacterized protein~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1429 Arch_1430 Arch_1430 Arch_1430 1566314 1567351 - adenylate/guanylate cyclase COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain)~InterPro IPR001054:IPR009061~KEGG: bcv:Bcav_1154 adenylate/guanylate cyclase~PFAM: adenylyl cyclase class-3/4/guanylyl cyclase~PRIAM: Adenylate cyclase~SPTR: D0WPL7 Putative adenylate cyclase~PFAM: Adenylate and Guanylate cyclase catalytic domain gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1430 Arch_1431 Arch_1431 Arch_1431 1567471 1569135 + protein of unknown function DUF885 COGs: COG4805 conserved hypothetical protein~InterPro IPR010281~KEGG: bcv:Bcav_1144 protein of unknown function DUF885~PFAM: protein of unknown function DUF885~SPTR: D0WPL9 Putative uncharacterized protein~PFAM: Bacterial protein of unknown function (DUF885) gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1431 Arch_1432 Arch_1432 Arch_1432 1569132 1569767 + maf protein COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation~InterPro IPR003697~KEGG: saq:Sare_0794 maf protein~PFAM: Maf family protein~SPTR: D0WPM0 Maf protein~TIGRFAM: maf protein~PFAM: Maf-like protein~TIGRFAM: MAF protein gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1432 Arch_1433 Arch_1433 Arch_1433 1569841 1571172 - citrate synthase I COGs: COG0372 Citrate synthase~InterProIPR002020:IPR016142:IPR010953:IPR016141:IPR 019810~KEGG: ami:Amir_0528 citrate synthase I~PFAM: Citrate synthase~PRIAM: Citrate (Si)-synthase~SPTR: C0W847 Citrate synthase~TIGRFAM: citrate synthase I~PFAM: Citrate synthase~TIGRFAM: citrate synthase I (hexameric type) gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1433 Arch_1434 Arch_1434 Arch_1434 1571333 1571656 - 4Fe-4S ferredoxin iron-sulfur binding domain protein InterPro IPR017896:IPR001450:IPR000813:IPR017900~KEGG: lxx:Lxx16240 ferredoxin~PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~SPTR: Q6ADY3 Ferredoxin~PFAM: 4Fe-4S binding domain gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1434 Arch_1435 Arch_1435 Arch_1435 1571734 1573434 - VanW family protein COGs: COG2720 Uncharacterized vancomycin resistance protein~InterPro IPR007391~KEGG: jde:Jden_0796 VanW family protein~PFAM: VanW family protein~SPTR: D0WPN1 VanW like protein~PFAM: Putative peptidoglycan binding domain%3B VanW like protein gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1435 Arch_1436 Arch_1436 Arch_1436 1573434 1573820 - hypothetical protein KEGG: nca:Noca_3804 hypothetical protein~SPTR: D0WPN2 Anion transporter gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1436 Arch_1437 Arch_1437 Arch_1437 1573827 1575752 - GTP-binding protein TypA COGs: COG1217 membrane GTPase involved in stress response~InterProIPR000795:IPR004161:IPR000640:IPR005225:IPR 006298:IPR009022:IPR009000~KEGG: jde:Jden_0793 GTP-binding protein TypA~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein%3B elongation factor G domain protein~SPTR: D0WPN3 GTP-binding protein TypA/BipA~TIGRFAM: GTP-binding protein TypA%3B small GTP-binding protein~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain~TIGRFAM: GTP-binding protein TypA/BipA%3B small GTP-binding protein domain gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1437 Arch_1438 Arch_1438 Arch_1438 1575865 1576533 + hypothetical protein KEGG: lxx:Lxx16370 integral membrane protein~SPTR: Q6ADX4 Integral membrane protein~PFAM: Protein of unknown function (DUF2581) gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1438 Arch_1439 Arch_1439 Arch_1439 1576530 1578260 - ABC transporter related protein COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterProIPR003439:IPR017940:IPR001140:IPR003593:IPR 011527:IPR001412~KEGG: bcv:Bcav_3042 ABC transporter related~PFAM: ABC transporter related%3B ABC transporter transmembrane region~SMART: AAA ATPase~SPTR: C2BVE7 ABC superfamily ATP binding cassette transporter ATP-binding and permease protein~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1439 Arch_1440 Arch_1440 Arch_1440 1578257 1580251 - ABC transporter transmembrane region COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterProIPR003439:IPR017940:IPR001140:IPR011527:IPR 017871~KEGG: bcv:Bcav_3041 ABC transporter transmembrane region~PFAM: ABC transporter transmembrane region%3B ABC transporter related~SPTR: D0WKT9 Putative ABC transporter~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1440 Arch_1441 Arch_1441 Arch_1441 1580725 1582416 - extracellular solute-binding protein family 5 COGs: COG0747 ABC-type dipeptide transport system periplasmic component~InterPro IPR000914~KEGG: pac:PPA1840 extracellular solute-binding transport protein%2C putative oligopeptide-binding protein~PFAM: extracellular solute-binding protein family 5~SPTR: C0VZP4 Oligopeptide ABC superfamily ATP binding cassette transporter%2C binding protein~PFAM: Bacterial extracellular solute-binding proteins%2C family 5 Middle gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1441 Arch_1442 Arch_1442 Arch_1442 1582617 1584746 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component~InterProIPR003439:IPR013563:IPR010066:IPR003593:IPR 017871~KEGG: cai:Caci_8315 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase~SPTR: C0VZP3 Oligopeptide/dipeptide ABC superfamily ATP binding cassette transporter~TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter%3B Oligopeptide/dipeptide transporter%2C C-terminal region~TIGRFAM: phosphonate C-P lyase system protein PhnK%3B oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal domain gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1442 Arch_1443 Arch_1443 Arch_1443 1584743 1585708 - binding-protein-dependent transport systems inner membrane component COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: sma:SAV_3046 peptide ABC transporter permease protein~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C0W836 Peptide ABC superfamily ATP binding cassette transporter%2C permease protein~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1443 Arch_1444 Arch_1444 Arch_1444 1585708 1586715 - binding-protein-dependent transport systems inner membrane component COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components~InterPro IPR000515~KEGG: sro:Sros_7099 binding-protein-dependent transport systems inner membrane component~PFAM: binding-protein-dependent transport systems inner membrane component~SPTR: C0VZP1 Peptide ABC superfamily ATP binding cassette transporter permease protein~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1444 Arch_1445 Arch_1445 Arch_1445 1586985 1587770 + lipoate-protein ligase B COGs: COG0321 Lipoate-protein ligase B~InterPro IPR004143:IPR000544~KEGG: cms:CMS_1882 lipoyltransferase~PFAM: biotin/lipoate A/B protein ligase~PRIAM: Lipoyl(octanoyl) transferase~SPTR: D0WPN9 Lipoyl(Octanoyl) transferase~TIGRFAM: lipoate-protein ligase B~manually curated~PFAM: Biotin/lipoate A/B protein ligase family~TIGRFAM: lipoate-protein ligase B gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1445 Arch_1446 Arch_1446 Arch_1446 1587749 1588798 + lipoic acid synthetase COGs: COG0320 Lipoate synthase~InterPro IPR003698:IPR007197:IPR013785:IPR006638~KEGG: rop:ROP_08810 lipoyl synthase~PFAM: Radical SAM domain protein~PRIAM: Lipoyl synthase~SMART: Elongator protein 3/MiaB/NifB~SPTR: D0WPP0 Lipoyl synthase~TIGRFAM: lipoic acid synthetase~PFAM: Radical SAM superfamily~TIGRFAM: lipoate synthase gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1446 Arch_1447 Arch_1447 Arch_1447 1588896 1590452 - AMP-dependent synthetase and ligase COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II~InterPro IPR000873:IPR020845~KEGG: sen:SACE_2795 putative feruloyl-CoA synthetase~PFAM: AMP-dependent synthetase and ligase~SPTR: D0WPP1 Fatty-acid--CoA ligase~PFAM: AMP-binding enzyme gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1447 Arch_1448 Arch_1448 Arch_1448 1590449 1591750 - Aspartyl aminopeptidase COGs: COG1362 Aspartyl aminopeptidase~InterPro IPR001948~KEGG: pac:PPA0574 putative aminopeptidase 2~PFAM: peptidase M18 aminopeptidase I~PRIAM: Aspartyl aminopeptidase~SPTR: Q6AA87 M18 family aminopeptidase~PFAM: Aminopeptidase I zinc metalloprotease (M18) gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1448 Arch_1449 Arch_1449 Arch_1449 1591773 1592540 - NUDIX family protein KEGG: kse:Ksed_02110 NUDIX family protein~SPTR: C7NJG7 NUDIX family protein gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1449 Arch_1450 Arch_1450 Arch_1450 1592653 1593105 - dual specificity protein phosphatase InterPro IPR000387~KEGG: gym:GYMC10_3221 dual specificity protein phosphatase~SPTR: A0JXC1 Dual specificity protein phosphatase~PFAM: Protein-tyrosine phosphatase gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1450 Arch_1451 Arch_1451 Arch_1451 1593321 1595528 + isocitrate dehydrogenase%2C NADP-dependent COGs: COG2838 Monomeric isocitrate dehydrogenase~InterPro IPR004436~KEGG: sma:SAV_7214 isocitrate dehydrogenase~PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type~PRIAM: Isocitrate dehydrogenase (NADP(+))~SPTR: Q826H9 Putative isocitrate dehydrogenase~TIGRFAM: isocitrate dehydrogenase%2C NADP-dependent~PFAM: Monomeric isocitrate dehydrogenase~TIGRFAM: isocitrate dehydrogenase%2C NADP-dependent%2C monomeric type gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1451 Arch_1452 Arch_1452 Arch_1452 1595596 1596141 + hypothetical protein KEGG: krh:KRH_07740 hypothetical protein~SPTR: C6RBJ7 Putative uncharacterized protein gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1452 Arch_1453 Arch_1453 Arch_1453 1596288 1597244 - L-lactate dehydrogenase COGs: COG0039 Malate/lactate dehydrogenase~InterProIPR001557:IPR001236:IPR016040:IPR015955:IPR 011304:IPR018177~KEGG: art:Arth_3978 malate dehydrogenase (NAD)~PFAM: Lactate/malate dehydrogenase~SPTR: A0K233 Malate dehydrogenase (NAD)~TIGRFAM: L-lactate dehydrogenase~PFAM: lactate/malate dehydrogenase%2C alpha/beta C-terminal domain%3B lactate/malate dehydrogenase%2C NAD binding domain~TIGRFAM: L-lactate dehydrogenase gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1453 Arch_1454 Arch_1454 Arch_1454 1597388 1598170 + 2-oxopent-4-enoate hydratase COGs: COG3971 2-keto-4-pentenoate hydratase~InterPro IPR002529:IPR011234~KEGG: bja:blr1240 2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase~PFAM: fumarylacetoacetate (FAA) hydrolase~PRIAM: 2-oxopent-4-enoate hydratase~SPTR: Q89V18 2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase~PFAM: Fumarylacetoacetate (FAA) hydrolase family~TIGRFAM: 2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1454 Arch_1455 Arch_1455 Arch_1455 1598182 1599438 + alpha/beta hydrolase fold protein InterPro IPR000073:IPR002410~KEGG: cef:CE0596 putative prolyl aminopeptidase~PFAM: alpha/beta hydrolase fold~SPTR: Q8FS10 Putative prolyl aminopeptidase~PFAM: alpha/beta hydrolase fold gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1455 Arch_1456 Arch_1456 Arch_1456 1599499 1599897 + conserved hypothetical protein KEGG: krh:KRH_21190 hypothetical protein~SPTR: C2BVW5 Putative uncharacterized protein gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1456 Arch_1457 Arch_1457 Arch_1457 1599890 1601116 - peptidase T COGs: COG2195 Di- and tripeptidase~InterPro IPR010161:IPR002933:IPR011650:IPR001261~KEGG: pwa:Pecwa_2931 peptidase T~PFAM: peptidase dimerisation domain protein%3B peptidase M20~PRIAM: Tripeptide aminopeptidase~SPTR: C0WE72 Peptidase T~TIGRFAM: peptidase T~PFAM: Peptidase family M20/M25/M40%3B Peptidase dimerisation domain~TIGRFAM: peptidase T gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1457 Arch_1458 Arch_1458 Arch_1458 1601335 1603314 + PTS system%2C glucose subfamily%2C IIA subunit COGs: COG1263 Phosphotransferase system IIC components glucose/maltose/N-acetylglucosamine-specific~InterProIPR001127:IPR001996:IPR013013:IPR018113:IPR 003352:IPR011055~KEGG: cdi:DIP1151 PTS system%2C glucose-specific IIABC component~PFAM: sugar-specific permease EIIA 1 domain%3B phosphotransferase system EIIC%3B Phosphotransferase system EIIB/cysteine%2C phosphorylation site~PRIAM: Protein-N(pi)-phosphohistidine--sugar phosphotransferase~SPTR: C2CRZ1 Protein-N(Pi)-phosphohistidine--sugar phosphotransferase~TIGRFAM: PTS system%2C glucose subfamily%2C IIA subunit~PFAM: Phosphotransferase system%2C EIIC%3B phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 1%3B phosphotransferase system%2C EIIB~TIGRFAM: PTS system%2C glucose subfamily%2C IIA component gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1458 Arch_1459 Arch_1459 Arch_1459 1603323 1604168 + transcriptional antiterminator%2C BglG COGs: COG3711 Transcriptional antiterminator~InterPro IPR011608:IPR004341~KEGG: bad:BAD_0367 transcription antiterminator LicT~PFAM: CAT RNA-binding domain protein%3B PRD domain protein~SPTR: B1S6B5 Putative uncharacterized protein~PFAM: CAT RNA binding domain%3B PRD domain gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1459 Arch_1460 Arch_1460 Arch_1460 1604263 1605963 - phosphoenolpyruvate-protein phosphotransferase COGs: COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component)~InterProIPR008731:IPR008279:IPR000121:IPR015813:IPR 006318~KEGG: pac:PPA0351 putative phosphoenolpyruvate-protein kinase~PFAM: PEP-utilizing protein%3B PEP-utilising protein mobile region%3B PEP-utilising protein domain protein~SPTR: C2GEA4 Phosphoenolpyruvate--protein phosphotransferase~TIGRFAM: phosphoenolpyruvate-protein phosphotransferase~PFAM: PEP-utilising enzyme%2C mobile domain%3B PEP-utilising enzyme%2C TIM barrel domain%3B PEP-utilising enzyme%2C N-terminal~TIGRFAM: phosphoenolpyruvate-protein phosphotransferase gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1460 Arch_1461 Arch_1461 Arch_1461 1605968 1606231 - Phosphotransferase system%2C phosphocarrier protein HPr COGs: COG1925 Phosphotransferase system HPr-related protein~InterPro IPR000032:IPR005698:IPR001020~KEGG: cef:CE1830 putative PTS phosphohistidine-containing protein~PFAM: phosphoryl transfer system HPr~SPTR: A7BEU7 Putative uncharacterized protein~TIGRFAM: phosphocarrier%2C HPr family~PFAM: PTS HPr component phosphorylation site~TIGRFAM: Phosphotransferase System HPr (HPr) Family gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1461 Arch_1462 Arch_1462 Arch_1462 1612113 1612655 + NADPH-dependent FMN reductase COGs: COG0431 flavoprotein~InterPro IPR005025~KEGG: cpy:Cphy_1114 NADPH-dependent FMN reductase~PFAM: NADPH-dependent FMN reductase~SPTR: C9CNV8 Flavoprotein~PFAM: NADPH-dependent FMN reductase gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1462 Arch_1463 Arch_1463 Arch_1463 1612732 1613163 - Rhodanese domain protein COGs: COG0607 Rhodanese-related sulfurtransferase~InterPro IPR001763~KEGG: bba:Bd0919 phage shock protein~PFAM: Rhodanese domain protein~SMART: Rhodanese domain protein~SPTR: C0W0D3 Rhodanese domain protein~PFAM: Rhodanese-like domain gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1463 Arch_1464 Arch_1464 Arch_1464 1613201 1613437 - coagulation factor 5/8 type domain protein InterPro IPR000421:IPR008979~KEGG: coc:Coch_0195 glycoside hydrolase family 2 TIM barrel~PFAM: coagulation factor 5/8 type domain protein~SPTR: A3TGR0 Putative membrane protein~PFAM: F5/8 type C domain gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1464 Arch_1465 Arch_1465 Arch_1465 1613490 1613819 - hypothetical protein InterPro IPR008979~KEGG: pac:PPA1821 putative sialidase~SPTR: Q6A6R6 Putative sialidase gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1465 Arch_1466 Arch_1466 Arch_1466 1613949 1614410 + Ferritin Dps family protein COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant)~InterPro IPR002177:IPR008331:IPR012347:IPR009078~KEGG: pac:PPA2134 starvation-inducible DNA-binding protein or fine tangled pili major subunit~PFAM: Ferritin Dps family protein~SPTR: A7BBG2 Putative uncharacterized protein~PFAM: Ferritin-like domain gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1466 Arch_1467 Arch_1467 Arch_1467 1614541 1615446 - conserved hypothetical protein KEGG: cur:cur_1084 hypothetical protein~SPTR: B1VH03 Putative uncharacterized protein gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1467 Arch_1468 Arch_1468 Arch_1468 1615463 1616260 - Abortive infection protein InterPro IPR003675~KEGG: bcz:BCZK3196 CAAX amino terminal protease family protein~PFAM: Abortive infection protein~SPTR: C7GD25 Putative membrane spanning protein~PFAM: CAAX amino terminal protease family gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1468 Arch_1469 Arch_1469 Arch_1469 1616257 1616856 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen COGs: COG1225 Peroxiredoxin~InterPro IPR017936:IPR000866:IPR012335:IPR012336~KEGG: bca:BCE_3632 AhpC/TSA family protein~PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen~SPTR: C2MNU3 AhpC/TSA~PFAM: AhpC/TSA family gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1469 Arch_1470 Arch_1470 Arch_1470 1616979 1617836 - cytochrome c-type biogenesis protein CcsB COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component~InterPro IPR002541:IPR017562~KEGG: dhd:Dhaf_3357 cytochrome c-type biogenesis protein CcsB~PFAM: cytochrome c assembly protein~SPTR: Q0PIF5 Cytochrome c biogenesis protein~TIGRFAM: cytochrome c-type biogenesis protein CcsB~PFAM: Cytochrome C assembly protein~TIGRFAM: cytochrome c-type biogenesis protein CcsB gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1470 Arch_1471 Arch_1471 Arch_1471 1617829 1619271 - ResB family protein COGs: COG1333 ResB protein required for cytochrome c biosynthesis~InterPro IPR007816~KEGG: gem:GM21_3520 ResB family protein~PFAM: ResB family protein~SPTR: C6E5L7 ResB family protein~PFAM: ResB-like family gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1471 Arch_1472 Arch_1472 Arch_1472 1619290 1619979 - cytochrome c biogenesis protein transmembrane region COGs: COG0785 Cytochrome c biogenesis protein~InterPro IPR003834~KEGG: mav:MAV_4618 cytochrome c biogenesis protein transmembrane region~PFAM: cytochrome c biogenesis protein transmembrane region~SPTR: Q73SQ0 CcsA~PFAM: Cytochrome C biogenesis protein transmembrane region gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1472 Arch_1473 Arch_1473 Arch_1473 1619982 1620800 - Tetratricopeptide TPR_2 repeat protein InterPro IPR019734:IPR013026:IPR013105:IPR011990~KEGG: acp:A2cp1_3178 TPR repeat-containing protein~PFAM: Tetratricopeptide TPR_2 repeat protein~SPTR: Q1K1D9 Tetratricopeptide TPR_2~PFAM: Tetratricopeptide repeat gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1473 Arch_1474 Arch_1474 Arch_1474 1620841 1622328 - Nitrite reductase (cytochrome%3B ammonia-forming) COGs: COG3303 Formate-dependent nitrite reductase periplasmic cytochrome c552 subunit~InterPro IPR003321:IPR011031~KEGG: mxa:MXAN_2209 putative cytochrome c nitrite reductase%2C catalytic subunit NrfA~PFAM: cytochrome c552~PRIAM: Nitrite reductase (cytochrome%3B ammonia-forming)~SPTR: B4CX41 Nitrite reductase (Cytochrome%3B ammonia-forming)~PFAM: Cytochrome c552 gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1474 Arch_1475 Arch_1475 Arch_1475 1622334 1622840 - cytochrome c nitrate reductase%2C small subunit COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cytochrome c subunit~InterPro IPR011031:IPR005126:IPR017571~KEGG: mxa:MXAN_2210 putative cytochrome c nitrite reductase%2C small subunit NrfH~PFAM: NapC/NirT cytochrome c domain protein~SPTR: Q1DA91 Putative cytochrome c nitrite reductase%2C small subunit NrfH~TIGRFAM: cytochrome c nitrate reductase%2C small subunit~PFAM: NapC/NirT cytochrome c family%2C N-terminal region~TIGRFAM: cytochrome c nitrate reductase%2C small subunit gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1475 Arch_1476 Arch_1476 Arch_1476 1623077 1623526 - ribose 5-phosphate isomerase COGs: COG0698 Ribose 5-phosphate isomerase RpiB~InterPro IPR003500:IPR011860~KEGG: pac:PPA2324 ribose 5-phosphate isomerase~PFAM: Ribose/galactose isomerase~SPTR: Q3LFG7 Ribose-5-phosphate isomerase 2~TIGRFAM: ribose 5-phosphate isomerase%3B sugar-phosphate isomerase%2C RpiB/LacA/LacB family~PFAM: Ribose/Galactose Isomerase~TIGRFAM: ribose 5-phosphate isomerase%3B sugar-phosphate isomerases%2C RpiB/LacA/LacB family gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1476 Arch_1477 Arch_1477 Arch_1477 1623557 1623949 - class II aldolase/adducin family protein COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase~InterPro IPR001303~KEGG: bcv:Bcav_3273 class II aldolase/adducin family protein~PFAM: class II aldolase/adducin family protein~SPTR: D0YRB2 L-ribulose-5-phosphate 4-epimerase UlaF~PFAM: Class II Aldolase and Adducin N-terminal domain gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1477 Arch_1478 Arch_1478 Arch_1478 1624023 1625054 - transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR010982~KEGG: sco:SCO5692 transcriptional regulator~PFAM: regulatory protein LacI~SMART: regulatory protein LacI~SPTR: C0W8S7 Regulatory protein LacI family protein~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1478 Arch_1479 Arch_1479 Arch_1479 1625094 1625513 - pseudogene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1479 Arch_1480 Arch_1480 Arch_1480 1625540 1626133 - Uracil-DNA glycosylase superfamily COGs: COG3663 G:T/U mismatch-specific DNA glycosylase~InterPro IPR005122~KEGG: bln:Blon_0119 uracil-DNA glycosylase superfamily~PFAM: Uracil-DNA glycosylase superfamily~SPTR: B7GT25 Uracil-DNA glycosylase superfamily~PFAM: Uracil DNA glycosylase superfamily~TIGRFAM: mismatch-specific thymine-DNA glycosylate (mug) gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1480 Arch_1481 Arch_1481 Arch_1481 1626333 1626863 - GCN5-related N-acetyltransferase COGs: COG3981 acetyltransferase~InterPro IPR000182:IPR016181~KEGG: krh:KRH_21070 putative acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: C1RPY2 Predicted acetyltransferase%2C COG3981~PFAM: Acetyltransferase (GNAT) family gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1481 Arch_1482 Arch_1482 Arch_1482 1626863 1627489 - conserved hypothetical protein KEGG: dhd:Dhaf_2491 hypothetical protein~SPTR: C7HA54 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF2812) gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1482 Arch_1483 Arch_1483 Arch_1483 1627486 1627806 - transcriptional regulator%2C PadR-like family InterPro IPR005149:IPR011991~KEGG: cby:CLM_2307 transcriptional regulator%2C PadR family~PFAM: transcriptional regulator PadR family protein~SPTR: C1FQA7 Transcriptional regulator%2C PadR family~PFAM: Transcriptional regulator PadR-like family gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1483 Arch_1484 Arch_1484 Arch_1484 1627950 1628075 - conserved hypothetical protein KEGG: cdi:DIP0946 hypothetical protein~SPTR: Q6NI33 Putative secreted protein gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1484 Arch_1485 Arch_1485 Arch_1485 1628072 1629631 - sodium:neurotransmitter symporter COGs: COG0733 Na+-dependent transporter of the SNF family~InterPro IPR000175~KEGG: ckp:ckrop_0020 putative transporter of the neurotransmitter:sodium syporter family~PFAM: sodium:neurotransmitter symporter~SPTR: C4LGC4 Transporter~PFAM: Sodium:neurotransmitter symporter family gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1485 Arch_1486 Arch_1486 Arch_1486 1629972 1630337 - ABC transporter ATP-binding protein COGs: COG1131 ABC-type multidrug transport system ATPase component~KEGG: rsa:RSal33209_0879 ABC transporter ATP-binding protein~SPTR: A9WQH2 ABC transporter ATP-binding protein~PFAM: Adenovirus IVa2 protein gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1486 Arch_1487 Arch_1487 Arch_1487 1630577 1631998 - sulfatase COGs: COG3119 Arylsulfatase A~InterPro IPR000917:IPR017849:IPR017850~KEGG: bfa:Bfae_28950 arylsulfatase A family protein~PFAM: sulfatase~SPTR: C0W1U3 Sulfatase~PFAM: Sulfatase gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1487 Arch_1488 Arch_1488 Arch_1488 1632075 1633088 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR010982~KEGG: sth:STH770 LacI family transcriptional repressor~PFAM: regulatory protein LacI~SMART: regulatory protein LacI~SPTR: C0W1U4 Putative uncharacterized protein~PFAM: Bacterial regulatory proteins%2C lacI family gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1488 Arch_1489 Arch_1489 Arch_1489 1633085 1634449 - General substrate transporter COGs: COG2814 Arabinose efflux permease~InterPro IPR005828:IPR016196:IPR005829~KEGG: kpn:KPN_03142 putative general substrate transporter~PFAM: General substrate transporter~SPTR: C0W1U5 Major facilitator family protein transporter~PFAM: Sugar (and other) transporter gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1489 Arch_1490 Arch_1490 Arch_1490 1634618 1635871 + Radical SAM domain protein COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)~InterPro IPR007197~KEGG: tmz:Tmz1t_1479 radical SAM domain protein~PFAM: Radical SAM domain protein~SPTR: D0YU66 Anaerobic sulfatase-maturating enzyme~PFAM: Radical SAM superfamily gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1490 Arch_1491 Arch_1491 Arch_1491 1635876 1636622 + protein of unknown function DUF81 InterPro IPR002781~KEGG: nml:Namu_0360 protein of unknown function DUF81~PFAM: protein of unknown function DUF81~SPTR: C0VYF1 Membrane permease protein~PFAM: Sulfite exporter TauE/SafE gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1491 Arch_1492 Arch_1492 Arch_1492 1637121 1638428 - conserved hypothetical protein KEGG: dps:DP0242 hypothetical protein~SPTR: A6E5J8 Putative uncharacterized protein gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1492 Arch_1493 Arch_1493 Arch_1493 1638428 1639024 - conserved hypothetical protein KEGG: mmw:Mmwyl1_1516 hypothetical protein~SPTR: A9EBS5 Putative uncharacterized protein gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1493 Arch_1494 Arch_1494 Arch_1494 1639085 1640182 - GTP-binding protein YchF COGs: COG0012 GTPase probable translation factor~InterProIPR004396:IPR002917:IPR013029:IPR012675:IPR 012676:IPR006073~KEGG: bfa:Bfae_22930 GTP-binding protein YchF~PFAM: Protein of unknown function DUF933%3B GTP-binding protein HSR1-related~SPTR: D0WPX9 GTP-binding protein YchF~TIGRFAM: GTP-binding protein YchF~manually curated~PFAM: GTPase of unknown function%3B Protein of unknown function (DUF933)~TIGRFAM: GTP-binding protein YchF gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1494 Arch_1495 Arch_1495 Arch_1495 1640313 1641536 + protein of unknown function DUF195 COGs: COG1322 conserved hypothetical protein~InterPro IPR003798~KEGG: krh:KRH_07130 RmuC family protein~PFAM: protein of unknown function DUF195~SPTR: D0WPY8 Ribosomal protein S9~PFAM: RmuC family gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1495 Arch_1496 Arch_1496 Arch_1496 1641556 1641999 - hypothetical protein KEGG: nar:Saro_2594 hypothetical protein~SPTR: Q2G543 Putative uncharacterized protein gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1496 Arch_1497 Arch_1497 Arch_1497 1642007 1642360 - transcriptional regulator%2C XRE family InterPro IPR001387:IPR010982~KEGG: ppr:PBPRB0292 hypothetical protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein~SPTR: Q6LKV5 Putative uncharacterized protein Y2012~PFAM: Helix-turn-helix gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1497 Arch_1498 Arch_1498 Arch_1498 1642422 1642964 - hypothetical protein KEGG: hypothetical protein~SPTR: B0EL31 Putative uncharacterized protein gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1498 Arch_1499 Arch_1499 Arch_1499 1643001 1644140 - hydroxymethylbutenyl pyrophosphate reductase COGs: COG0761 Penicillin tolerance protein~InterPro IPR003451~KEGG: xce:Xcel_0941 hydroxymethylbutenyl pyrophosphate reductase~PFAM: LytB protein~PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase~SPTR: D0WPZ0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase~TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase~PFAM: LytB protein~TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1499 Arch_1500 Arch_1500 Arch_1500 1644386 1645651 + exodeoxyribonuclease VII%2C large subunit COGs: COG1570 Exonuclease VII large subunit~InterPro IPR004365:IPR020579:IPR003753~KEGG: jde:Jden_0746 exodeoxyribonuclease VII%2C large subunit~PFAM: Exonuclease VII%2C large subunit-like%3B nucleic acid binding OB-fold tRNA/helicase-type~SPTR: D0WPZ1 Exodeoxyribonuclease VII%2C large subunit~TIGRFAM: exodeoxyribonuclease VII%2C large subunit~PFAM: Exonuclease VII%2C large subunit%3B OB-fold nucleic acid binding domain~TIGRFAM: exodeoxyribonuclease VII%2C large subunit gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1500 Arch_1501 Arch_1501 Arch_1501 1645638 1645892 + exodeoxyribonuclease VII%2C small subunit InterPro IPR003761~KEGG: ach:Achl_2551 exodeoxyribonuclease VII%2C small subunit~PFAM: Exonuclease VII small subunit~SPTR: D0WPZ2 Exodeoxyribonuclease VII%2C small subunit~TIGRFAM: exodeoxyribonuclease VII%2C small subunit~PFAM: Exonuclease VII small subunit~TIGRFAM: exodeoxyribonuclease VII%2C small subunit gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1501 Arch_1502 Arch_1502 Arch_1502 1645894 1646841 + PfkB domain protein COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: kra:Krad_1118 PfkB domain protein~PFAM: PfkB domain protein~SPTR: A6W717 PfkB domain protein~PFAM: pfkB family carbohydrate kinase gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1502 Arch_1503 Arch_1503 Arch_1503 1646894 1647652 - undecaprenyl diphosphate synthase COGs: COG0020 Undecaprenyl pyrophosphate synthase~InterPro IPR001441:IPR018520~KEGG: xce:Xcel_2629 undecaprenyl diphosphate synthase~PFAM: Di-trans-poly-cis-decaprenylcistransferase~PRIAM: Di-trans%2Cpoly-cis-decaprenylcistransferase~SPTR: D1BX75 Undecaprenyl diphosphate synthase~TIGRFAM: undecaprenyl diphosphate synthase~PFAM: Putative undecaprenyl diphosphate synthase~TIGRFAM: undecaprenyl diphosphate synthase gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1503 Arch_1504 Arch_1504 Arch_1504 1647800 1648462 + channel protein%2C hemolysin III family COGs: COG1272 membrane protein hemolysin III homolog~InterPro IPR004254:IPR005744~KEGG: xce:Xcel_2630 Hly-III family protein~PFAM: Hly-III family protein~SPTR: D0WPZ5 Channel protein%2C hemolysin III family~TIGRFAM: channel protein%2C hemolysin III family~PFAM: Haemolysin-III related~TIGRFAM: channel protein%2C hemolysin III family gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1504 Arch_1505 Arch_1505 Arch_1505 1648663 1649142 + GreA/GreB family elongation factor COGs: COG0782 Transcription elongation factor~InterPro IPR001437:IPR018151~KEGG: art:Arth_1167 GreA/GreB family elongation factor~PFAM: transcription elongation factor GreA/GreB domain protein~SPTR: A0JU41 GreA/GreB family elongation factor~PFAM: domain%3B Transcription elongation factor%2C GreA/GreB%2C C-term~TIGRFAM: transcription elongation factor GreA gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1505 Arch_1506 Arch_1506 Arch_1506 1649147 1649815 + peptide methionine sulfoxide reductase COGs: COG0225 Peptide methionine sulfoxide reductase~InterPro IPR002569~KEGG: xce:Xcel_2640 peptide methionine sulfoxide reductase~PFAM: Methionine sulfoxide reductase A~PRIAM: Peptide-methionine (S)-S-oxide reductase~SPTR: D0WPZ7 Methionine-S-sulfoxide reductase~TIGRFAM: peptide methionine sulfoxide reductase~PFAM: Peptide methionine sulfoxide reductase~TIGRFAM: methionine-S-sulfoxide reductase gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1506 Arch_1507 Arch_1507 Arch_1507 1649871 1650305 + peptidylprolyl isomerase FKBP-type COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1~InterPro IPR001179~KEGG: bcv:Bcav_1060 peptidylprolyl isomerase FKBP-type~PFAM: peptidylprolyl isomerase FKBP-type~SPTR: D0WQ01 Peptidyl-prolyl cis-trans isomerase%2C FKBP-type~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1507 Arch_1508 Arch_1508 Arch_1508 1650369 1651175 - protein of unknown function DUF1112 COGs: COG4760 membrane protein~InterPro IPR010539~KEGG: jde:Jden_1900 protein of unknown function DUF1112~PFAM: protein of unknown function DUF1112~SPTR: D0WQ03 Putative integral membrane protein gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1508 Arch_1509 Arch_1509 Arch_1509 1651425 1652366 + ABC transporter related protein COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003439:IPR003593:IPR017871~KEGG: cef:CE2584 putative ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0WQ04 Bacitracin transport ATP-binding protein BcrA~PFAM: ABC transporter gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1509 Arch_1510 Arch_1510 Arch_1510 1652363 1653172 + hypothetical protein KEGG: sro:Sros_2509 hypothetical protein~SPTR: D0WQ05 Putative ABC transporter integral membrane protein gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1510 Arch_1511 Arch_1511 Arch_1511 1653262 1653463 - pseudogene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1511 Arch_1512 Arch_1512 Arch_1512 1653899 1655204 + pseudogene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1512 Arch_1513 Arch_1513 Arch_1513 1655274 1656230 - Ppx/GppA phosphatase COGs: COG0248 Exopolyphosphatase~InterPro IPR003695~KEGG: aau:AAur_1266 putative exopolyphosphatase (ppx)~PFAM: Ppx/GppA phosphatase~SPTR: D0WQ07 Phosphatase%2C Ppx/GppA family~PFAM: Ppx/GppA phosphatase family gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1513 Arch_1514 Arch_1514 Arch_1514 1656249 1656812 - protein of unknown function DUF501 COGs: COG1507 conserved hypothetical protein~InterPro IPR007511~KEGG: jde:Jden_1921 protein of unknown function DUF501~PFAM: protein of unknown function DUF501~SPTR: D0WQ08 Septum formation initiator family protein~PFAM: Protein of unknown function (DUF501) gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1514 Arch_1515 Arch_1515 Arch_1515 1656809 1657513 - Septum formation initiator InterPro IPR007060~KEGG: bcv:Bcav_1019 septum formation initiator~PFAM: Septum formation initiator~SPTR: D0WQ09 Putative membrane protein~PFAM: Septum formation initiator gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1515 Arch_1516 Arch_1516 Arch_1516 1657676 1658956 - enolase COGs: COG0148 Enolase~InterPro IPR000941:IPR020811:IPR020810:IPR020809~KEGG: krh:KRH_17820 enolase~PFAM: Enolase-like~PRIAM: Phosphopyruvate hydratase~SPTR: A7B9A0 Enolase~TIGRFAM: enolase~PFAM: Enolase%2C N-terminal domain%3B Enolase%2C C-terminal TIM barrel domain~TIGRFAM: phosphopyruvate hydratase gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1516 Arch_1517 Arch_1517 Arch_1517 1659192 1662698 - transcription-repair coupling factor COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase)~InterProIPR014021:IPR001650:IPR003711:IPR011545:IPR 005118:IPR004576:IPR014001~KEGG: xce:Xcel_2685 transcription-repair coupling factor~PFAM: transcription factor CarD%3B DEAD/DEAH box helicase domain protein%3B helicase domain protein%3B TRCF domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: D0WQ15 Transcription-repair coupling factor~TIGRFAM: transcription-repair coupling factor~PFAM: Helicase conserved C-terminal domain%3B TRCF domain%3B CarD-like/TRCF domain%3B DEAD/DEAH box helicase~TIGRFAM: transcription-repair coupling factor (mfd) gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1517 Arch_1518 Arch_1518 Arch_1518 1662726 1663313 - peptidyl-tRNA hydrolase COGs: COG0193 Peptidyl-tRNA hydrolase~InterPro IPR001328:IPR018171~KEGG: kra:Krad_1054 aminoacyl-tRNA hydrolase~PFAM: peptidyl-tRNA hydrolase~PRIAM: Aminoacyl-tRNA hydrolase~SPTR: A6W6V3 Peptidyl-tRNA hydrolase~TIGRFAM: peptidyl-tRNA hydrolase~PFAM: Peptidyl-tRNA hydrolase~TIGRFAM: peptidyl-tRNA hydrolase gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1518 Arch_1519 Arch_1519 Arch_1519 1663486 1664067 - ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc)~InterProIPR020055:IPR020056:IPR020057:IPR001021:IPR 011035~KEGG: bfa:Bfae_13410 ribosomal protein L25%2C Ctc-form~PFAM: Ribosomal protein L25-like~SPTR: D0WQ17 Ribosomal protein L25%2C Ctc-form~TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5~PFAM: Ribosomal L25p family~TIGRFAM: ribosomal protein L25%2C Ctc-form gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1519 Arch_1520 Arch_1520 Arch_1520 1664248 1665276 - ribose-phosphate pyrophosphokinase COGs: COG0462 Phosphoribosylpyrophosphate synthetase~InterPro IPR000836:IPR005946:IPR000842~KEGG: bcv:Bcav_0987 ribose-phosphate pyrophosphokinase~PFAM: phosphoribosyltransferase~PRIAM: Ribose-phosphate diphosphokinase~SPTR: D0WQ24 Ribose-phosphate pyrophosphokinase~TIGRFAM: ribose-phosphate pyrophosphokinase~PFAM: Phosphoribosyl transferase domain~TIGRFAM: ribose-phosphate pyrophosphokinase gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1520 Arch_1521 Arch_1521 Arch_1521 1665286 1666398 - Glucosamine-1-phosphate N-acetyltransferase COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains)~InterPro IPR001228:IPR011004~KEGG: jde:Jden_1943 UDP-N-acetylglucosamine pyrophosphorylase~PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~PRIAM: Glucosamine-1-phosphate N-acetyltransferase~SPTR: D0WQ25 UDP-N-acetylglucosamine diphosphorylase~PFAM: Nucleotidyl transferase~TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1521 Arch_1522 Arch_1522 Arch_1522 1666648 1667313 + transcriptional regulator%2C TetR family COGs: COG1309 Transcriptional regulator~InterPro IPR001647:IPR012287:IPR009057~KEGG: bcv:Bcav_0984 transcriptional regulator%2C TetR family~PFAM: regulatory protein TetR~SPTR: C5C059 Transcriptional regulator%2C TetR family~manually curated~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1522 Arch_1523 Arch_1523 Arch_1523 1667361 1668332 + ABC transporter related protein COGs: COG4152 ABC-type uncharacterized transport system ATPase component~InterPro IPR003439:IPR003593:IPR017871~KEGG: rop:ROP_50810 putative ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: D0WQ28 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1523 Arch_1524 Arch_1524 Arch_1524 1668334 1669560 + ABC-2 type transporter COGs: COG1668 ABC-type Na+ efflux pump permease component~KEGG: jde:Jden_1946 ABC-2 type transporter~SPTR: D0WQ29 Putative membrane protein gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1524 Arch_1525 Arch_1525 Arch_1525 1669746 1670624 - pseudogene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1525 Arch_1526 Arch_1526 Arch_1526 1670653 1672219 + pseudogene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1526 Arch_1527 Arch_1527 Arch_1527 1672281 1672928 - ABC transporter related protein COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterPro IPR003439:IPR003593~KEGG: bln:Blon_1030 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: B7GQP6 ABC transporter related~PFAM: ABC transporter gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1527 Arch_1528 Arch_1528 Arch_1528 1672954 1674149 - pseudogene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1528 Arch_1529 Arch_1529 Arch_1529 1674267 1674638 + hypothetical protein KEGG: ttr:Tter_2854 protein of unknown function DUF1648~SPTR: C2KPV3 Putative uncharacterized protein gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1529 Arch_1530 Arch_1530 Arch_1530 1674662 1674901 + conserved Hypothetical protein CBG11497 KEGG: Hypothetical protein CBG11497~SPTR: A8XCV2 C. briggsae CBR-DCT-17 protein (Fragment) gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1530 Arch_1531 Arch_1531 Arch_1531 1674907 1675059 + hypothetical protein gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1531 Arch_1532 Arch_1532 Arch_1532 1675240 1675404 + hypothetical protein gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1532 Arch_1533 Arch_1533 Arch_1533 1675408 1676537 + pseudogene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1533 Arch_1534 Arch_1534 Arch_1534 1676524 1677630 + methylase of polypeptide chain release factors-like protein COGs: COG4123 O-methyltransferase~KEGG: bln:Blon_1029 methylase of polypeptide chain release factors-like protein~SPTR: B7GQP5 Methylase of polypeptide chain release factors-like protein~PFAM: Methyltransferase small domain gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1534 Arch_1535 Arch_1535 Arch_1535 1677780 1678625 - conserved hypothetical protein KEGG: bln:Blon_1670 hypothetical protein~SPTR: C2BRH1 Putative uncharacterized protein gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1535 Arch_1536 Arch_1536 Arch_1536 1678643 1678780 - pseudogene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1536 Arch_1537 Arch_1537 Arch_1537 1678915 1679607 - Phage-related protein COGs: COG4722 Phage-related protein~KEGG: bce:BC2595 GP13 protein~SPTR: C2KNW0 Conserved bacteriophage protein~PFAM: Phage tail protein gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1537 Arch_1538 Arch_1538 Arch_1538 1679607 1681884 - pseudogene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1538 Arch_1539 Arch_1539 Arch_1539 1682120 1682389 + conserved hypothetical protein KEGG: hypothetical protein~SPTR: B2B7M1 Predicted CDS Pa_2_11580 gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1539 Arch_1540 Arch_1540 Arch_1540 1682389 1682562 + hypothetical protein gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1540 Arch_1541 Arch_1541 Arch_1541 1682698 1682808 - conserved hypothetical protein KEGG: cce:Ccel_2826 hypothetical protein~SPTR: C8RU65 Putative uncharacterized protein gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1541 Arch_1542 Arch_1542 Arch_1542 1682892 1683290 - conserved hypothetical protein KEGG: hmo:HM1_2967 hypothetical protein~SPTR: C2BV61 Putative uncharacterized protein gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1542 Arch_1543 Arch_1543 Arch_1543 1683303 1683890 - phage major tail protein%2C phi13 family InterPro IPR006490~KEGG: hmo:HM1_2966 phage major tail protein%2C phi13 family~SPTR: C2BV62 Phi13 family phage major tail protein~TIGRFAM: phage major tail protein%2C phi13 family~TIGRFAM: phage major tail protein%2C phi13 family gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1543 Arch_1544 Arch_1544 Arch_1544 1683910 1684254 - conserved hypothetical protein KEGG: cth:Cthe_1624 hypothetical protein~SPTR: C8RU62 Putative uncharacterized protein gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1544 Arch_1545 Arch_1545 Arch_1545 1684251 1684688 - phage protein%2C HK97 gp10 family InterPro IPR010064~KEGG: hmo:HM1_2877 phage protein%2C hk97 GP10 family%2C putative~SPTR: C8RU61 HK97 gp10 family phage protein~TIGRFAM: phage protein%2C HK97 gp10 family~PFAM: Bacteriophage protein of unknown function (DUF646)~TIGRFAM: phage protein%2C HK97 gp10 family gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1545 Arch_1546 Arch_1546 Arch_1546 1684695 1685024 - phage head-tail adaptor%2C putative KEGG: tex:Teth514_1257 phage head-tail adaptor%2C putative~SPTR: C8RU60 Phage head-tail adaptor~PFAM: Phage head-tail joining protein gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1546 Arch_1547 Arch_1547 Arch_1547 1685024 1685353 - uncharacterized phage protein (putative DNA packaging) InterPro IPR006450~KEGG: bca:BCE_0402 phage protein DNA packaging protein~SPTR: C2KNW9 Possible phage protein (Possible DNA packaging)~TIGRFAM: uncharacterized phage protein (possible DNA packaging)~PFAM: Phage QLRG family%2C putative DNA packaging~TIGRFAM: uncharacterized phage protein (possible DNA packaging) gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1547 Arch_1548 Arch_1548 Arch_1548 1685396 1686421 - phage major capsid protein%2C HK97 family COGs: COG4653 phage phi-C31 gp36 major capsid-like protein~InterPro IPR006444~KEGG: tex:Teth514_1254 HK97 family phage major capsid protein~PFAM: major capsid protein HK97~SPTR: C8RU58 HK97 family major capsid protein~TIGRFAM: phage major capsid protein%2C HK97 family~PFAM: Phage capsid family~TIGRFAM: phage major capsid protein%2C HK97 family gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1548 Arch_1549 Arch_1549 Arch_1549 1686443 1687276 - peptidase S14 ClpP COGs: COG0740 Protease subunit of ATP-dependent Clp protease~InterPro IPR001907~KEGG: det:DET1086 ATP-dependent Clp protease%2C proteolytic subunit ClpP%2C putative~PFAM: peptidase S14 ClpP~SPTR: C8RU57 ATP-dependent Clp protease%2C proteolytic subunit ClpP~PFAM: Clp protease gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1549 Arch_1550 Arch_1550 Arch_1550 1687273 1688583 - phage portal protein%2C HK97 family COGs: COG4695 Phage-related protein~InterPro IPR006944:IPR006427~KEGG: det:DET1087 HK97 family portal protein %2C putative~PFAM: portal protein~SPTR: C2KNX2 HK97 family portal protein~TIGRFAM: phage portal protein%2C HK97 family~PFAM: Phage portal protein~TIGRFAM: phage portal protein%2C HK97 family gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1550 Arch_1551 Arch_1551 Arch_1551 1688703 1689005 + transcriptional regulator%2C ArsR family COGs: COG0640 transcriptional regulator protein~InterPro IPR001845:IPR011991~KEGG: nml:Namu_2556 transcriptional regulator%2C ArsR family~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR~SPTR: C8X7G0 Transcriptional regulator%2C ArsR family~PFAM: Bacterial regulatory protein%2C arsR family gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1551 Arch_1552 Arch_1552 Arch_1552 1689002 1690180 + permease COGs: COG0701 permease~InterPro IPR005524~KEGG: ank:AnaeK_4014 permease~PFAM: permease~SPTR: B4UGD7 Permease~PFAM: Predicted permease gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1552 Arch_1553 Arch_1553 Arch_1553 1690191 1690586 + Protein-tyrosine phosphatase%2C low molecular weight COGs: COG0394 Protein-tyrosine-phosphatase~InterPro IPR017867~KEGG: ckp:ckrop_1615 arsenate reductase~PFAM: Protein-tyrosine phosphatase%2C low molecular weight~SMART: Protein-tyrosine phosphatase%2C low molecular weight~SPTR: C4LKI8 Arsenate reductase~PFAM: Low molecular weight phosphotyrosine protein phosphatase gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1553 Arch_1554 Arch_1554 Arch_1554 1690605 1690841 + redox-active disulfide protein 2 InterPro IPR012335:IPR005243:IPR012336~KEGG: mva:Mvan_5315 redox-active disulfide protein 2~SPTR: C1RG08 Small redox-active disulfide protein 2~TIGRFAM: redox-active disulfide protein 2~TIGRFAM: small redox-active disulfide protein 2 gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1554 Arch_1555 Arch_1555 Arch_1555 1690847 1692445 - Terminase COGs: COG4626 Phage terminase-like protein large subunit~InterPro IPR005021~KEGG: ckr:CKR_2343 hypothetical protein~PFAM: Terminase~SPTR: C8RU54 Prophage LambdaSa04%2C terminase%2C large subunit~PFAM: Phage Terminase gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1555 Arch_1556 Arch_1556 Arch_1556 1692596 1693484 - pseudogene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1556 Arch_1557 Arch_1557 Arch_1557 1693701 1694090 + transcriptional regulator%2C ArsR family COGs: COG0640 transcriptional regulator protein~InterPro IPR001845:IPR011991~KEGG: kse:Ksed_25700 transcriptional regulator%2C ArsR family~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR~SPTR: C8NVC6 ArsR family transcriptional regulator~PFAM: Bacterial regulatory protein%2C arsR family gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1557 Arch_1558 Arch_1558 Arch_1558 1694087 1694689 + cadmium resistance transporter COGs: COG4300 permease cadmium resistance protein~InterPro IPR004676~KEGG: mlu:Mlut_20660 predicted permease%2C cadmium resistance protein~PFAM: cadmium resistance transporter~SPTR: C5C749 Predicted permease%2C cadmium resistance protein~PFAM: Cadmium resistance transporter gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1558 Arch_1559 Arch_1559 Arch_1559 1694873 1695226 + hypothetical protein KEGG: cef:CE0267 hypothetical protein~SPTR: C0XQ96 Putative uncharacterized protein gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1559 Arch_1560 Arch_1560 Arch_1560 1695360 1696688 + conserved hypothetical protein KEGG: cdi:DIP0820 hypothetical protein~SPTR: C0XQ94 Putative uncharacterized protein gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1560 Arch_1561 Arch_1561 Arch_1561 1696685 1697176 + hypothetical protein KEGG: kse:Ksed_13660 hypothetical protein~SPTR: C0XQ94 Putative uncharacterized protein gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1561 Arch_1562 Arch_1562 Arch_1562 1697575 1697865 - hypothetical protein KEGG: hne:HNE_2042 cytochrome P450 family protein~SPTR: C8RU53 Ribosomal large subunit pseudouridine synthase D (RRNA-uridine isomerase D) (RRNA pseudouridylate synthase D) gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1562 Arch_1563 Arch_1563 Arch_1563 1697892 1698174 - pseudogene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1563 Arch_1564 Arch_1564 Arch_1564 1698339 1698686 - hypothetical protein KEGG: pac:PPA1584 hypothetical protein~SPTR: Q6A7E1 Putative uncharacterized protein gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1564 Arch_1565 Arch_1565 Arch_1565 1698802 1698981 - conserved hypothetical protein KEGG: ckl:CKL_2647 hypothetical protein~SPTR: C8RU50 Putative uncharacterized protein gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1565 Arch_1566 Arch_1566 Arch_1566 1698984 1699634 - phage-associated protein KEGG: pac:PPA1585 phage-associated protein~SPTR: C8RU49 Virulence-related protein gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1566 Arch_1567 Arch_1567 Arch_1567 1699631 1699816 - hypothetical protein SPTR: C8RU48 Toxin-antitoxin system%2C toxin component gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1567 Arch_1568 Arch_1568 Arch_1568 1699962 1701106 - pseudogene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1568 Arch_1569 Arch_1569 Arch_1569 1701086 1701367 + transposase IS3/IS911 family protein InterPro IPR002514~KEGG: kse:Ksed_22010 transposase~PFAM: transposase IS3/IS911 family protein~SPTR: C2BM30 ISMyma01 transposase~manually curated~PFAM: Transposase gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1569 Arch_1570 Arch_1570 Arch_1570 1701421 1702242 + Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR001584:IPR012337~KEGG: kse:Ksed_22000 transposase~PFAM: Integrase catalytic region~SPTR: A7B9Y7 Putative uncharacterized protein~PFAM: Integrase core domain gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1570 Arch_1571 Arch_1571 Arch_1571 1702268 1702498 - hypothetical protein KEGG: fra:Francci3_3318 glycosyl transferase family protein~SPTR: Q2J7R7 Glycosyl transferase%2C family 25 gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1571 Arch_1572 Arch_1572 Arch_1572 1702589 1703816 - pseudogene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1572 Arch_1573 Arch_1573 Arch_1573 1704090 1705832 - ABC transporter related protein COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterProIPR003439:IPR017940:IPR003593:IPR011527:IPR 017871~KEGG: ele:Elen_3090 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C2BVY6 ABC superfamily ATP binding cassette transporter%2C ABC/membrane protein~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1573 Arch_1574 Arch_1574 Arch_1574 1705847 1707589 - ABC transporter related protein COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterProIPR003439:IPR017940:IPR001140:IPR003593:IPR 011527:IPR017871~KEGG: ele:Elen_3091 ABC transporter related~PFAM: ABC transporter related%3B ABC transporter transmembrane region~SMART: AAA ATPase~SPTR: C2BVY7 ABC superfamily ATP binding cassette transporter%2C ABC/membrane protein~PFAM: ABC transporter%3B ABC transporter transmembrane region gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1574 Arch_1575 Arch_1575 Arch_1575 1707625 1709952 - ABC transporter related protein COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase~InterPro IPR003439:IPR003339:IPR003593:IPR017871~KEGG: lxx:Lxx21860 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related%3B cobalt transport protein~SMART: AAA ATPase~SPTR: C2BVY8 ABC superfamily ATP binding cassette transporter%2C ABC protein~PFAM: ABC transporter%3B Cobalt transport protein gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1575 Arch_1576 Arch_1576 Arch_1576 1709945 1710538 - ABC-type thiamin-related transport system%2C permease component 1%2C predicted InterPro IPR017195~KEGG: lxx:Lxx21850 ABC-type transporter%2C permease protein~PFAM: ABC-type thiamin-related transport system%2C permease component 1%2C predicted~SPTR: C2BVY9 ABC superfamily ATP binding cassette transporter%2C permease protein~PFAM: ABC-type cobalt transport system%2C permease component gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1576 Arch_1577 Arch_1577 Arch_1577 1710658 1711872 + Resolvase domain protein COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs~InterPro IPR006119:IPR011109~KEGG: cth:Cthe_1701 recombinase~PFAM: Resolvase domain%3B Recombinase~SPTR: C8RU75 Phage integrase family site-specific recombinase~PFAM: Recombinase%3B Resolvase%2C N terminal domain gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1577 Arch_1578 Arch_1578 Arch_1578 1711873 1713549 + Resolvase domain protein COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs~InterPro IPR006119:IPR011109~KEGG: spa:M6_Spy1124 site-specific recombinase~PFAM: Resolvase domain%3B Recombinase~SPTR: C8RU76 Resolvase family prophage LambdaSa04%2C site-specific recombinase~PFAM: Recombinase%3B Resolvase%2C N terminal domain gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1578 Arch_1579 Arch_1579 Arch_1579 1713471 1714235 - conserved hypothetical protein KEGG: cai:Caci_5930 hypothetical protein~SPTR: C2GDL7 Putative uncharacterized protein~TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1579 Arch_1580 Arch_1580 Arch_1580 1714270 1714965 - N-6 DNA methylase COGs: COG0286 Type I restriction-modification system methyltransferase subunit~InterPro IPR003356~KEGG: dvl:Dvul_0488 N-6 DNA methylase~PFAM: N-6 DNA methylase~SPTR: C8RRG5 Type I restriction-modification system%2C M subunit N-6 adenine-specific DNA methylase~PFAM: N-6 DNA Methylase%3B HsdM N-terminal domain gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1580 Arch_1581 Arch_1581 Arch_1581 1714955 1715161 - prevent-host-death family protein InterPro IPR006442~KEGG: amt:Amet_4059 hypothetical protein~SPTR: C2GDV9 Putative uncharacterized protein~TIGRFAM: prevent-host-death family protein~PFAM: Phd_YefM~TIGRFAM: prevent-host-death family protein gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1581 Arch_1582 Arch_1582 Arch_1582 1715505 1715909 - site-specific DNA-methyltransferase (adenine-specific) KEGG: dda:Dd703_3047 site-specific DNA-methyltransferase (adenine-specific)~SPTR: C6CCH7 Site-specific DNA-methyltransferase (Adenine-specific) gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1582 Arch_1583 Arch_1583 Arch_1583 1715947 1716120 - pseudogene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1583 Arch_1584 Arch_1584 Arch_1584 1716117 1716367 - pseudogene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1584 Arch_1585 Arch_1585 Arch_1585 1716634 1717164 - transcriptional regulator%2C MarR family InterPro IPR000835:IPR011991~KEGG: bcv:Bcav_0980 transcriptional regulator%2C MarR family~PFAM: regulatory protein MarR~SMART: regulatory protein MarR~SPTR: C1YV56 Transcriptional regulator%2C MarR family~PFAM: MarR family gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1585 Arch_1586 Arch_1586 Arch_1586 1717418 1719259 - ABC transporter related protein COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR017871:IPR003593:IPR003439~KEGG: mlu:Mlut_05410 ATPase component of ABC transporters with duplicated ATPase domain~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C0W7V6 ABC superfamily ATP binding cassette transporter%2C ABC protein~PFAM: ABC transporter gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1586 Arch_1587 Arch_1587 Arch_1587 1719373 1720323 - 4-diphosphocytidyl-2C-methyl-D-erythritolkinase COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase~InterProIPR020568:IPR006204:IPR013750:IPR004424:IPR 014721~KEGG: jde:Jden_1952 dimethyladenosine transferase~PFAM: GHMP kinase%3B GHMP kinase domain protein~SPTR: D0WQ34 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase~TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~PFAM: GHMP kinases N terminal domain~TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1587 Arch_1588 Arch_1588 Arch_1588 1720413 1720898 - PTS system%2C glucose subfamily%2C IIA subunit COGs: COG2190 Phosphotransferase system IIA components~InterPro IPR001127:IPR011055~KEGG: car:cauri_0239 PTS system%2C N-acetylglucosamine-specific IIABC component~PFAM: sugar-specific permease EIIA 1 domain~SPTR: C2GFH2 Pts system%2C N-acetylglucosamine-specific IIABC component~TIGRFAM: PTS system%2C glucose subfamily%2C IIA subunit~PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 1~TIGRFAM: PTS system%2C glucose subfamily%2C IIA component gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1588 Arch_1589 Arch_1589 Arch_1589 1720898 1722493 - PTS system%2C N-acetylglucosamine-specific IIBC subunit COGs: COG1263 Phosphotransferase system IIC components glucose/maltose/N-acetylglucosamine-specific~InterProIPR001996:IPR013013:IPR003352:IPR018113:IPR 010974:IPR011535~KEGG: car:cauri_0239 PTS system%2C N-acetylglucosamine-specific IIABC component~PFAM: phosphotransferase system EIIC%3B Phosphotransferase system EIIB/cysteine%2C phosphorylation site~SPTR: C2GFH2 Pts system%2C N-acetylglucosamine-specific IIABC component~TIGRFAM: PTS system%2C N-acetylglucosamine-specific IIBC subunit%3B PTS system%2C glucose-like IIB subunint~PFAM: Phosphotransferase system%2C EIIC%3B phosphotransferase system%2C EIIB~TIGRFAM: PTS system%2C N-acetylglucosamine-specific IIBC component%3B PTS system%2C glucose-like IIB component gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1589 Arch_1590 Arch_1590 Arch_1590 1722510 1723352 - transcriptional antiterminator%2C BglG COGs: COG3711 Transcriptional antiterminator~InterPro IPR011608:IPR004341~KEGG: dda:Dd703_1406 transcriptional antiterminator%2C BglG~PFAM: PRD domain protein%3B CAT RNA-binding domain protein~SPTR: C2GFH3 Transcriptional antiterminator~PFAM: CAT RNA binding domain%3B PRD domain gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1590 Arch_1591 Arch_1591 Arch_1591 1723480 1724385 - dimethyladenosine transferase COGs: COG0030 Dimethyladenosine transferase (rRNA methylation)~InterPro IPR020596:IPR020598:IPR001737:IPR011530~KEGG: bcv:Bcav_0975 dimethyladenosine transferase~PFAM: ribosomal RNA adenine methylase transferase~SMART: Ribosomal RNA adenine methylase transferase-like~SPTR: C0W7V3 Dimethyladenosine transferase~TIGRFAM: dimethyladenosine transferase~PFAM: Ribosomal RNA adenine dimethylase~TIGRFAM: dimethyladenosine transferase gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1591 Arch_1592 Arch_1592 Arch_1592 1724386 1725561 - G5 domain protein COGs: COG3583 conserved hypothetical protein~InterPro IPR011098:IPR007137~KEGG: bcv:Bcav_0973 G5 domain protein~PFAM: G5 domain protein%3B protein of unknown function DUF348~SPTR: C5C048 G5 domain protein~PFAM: Domain of unknown function (DUF348)%3B G5 domain gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1592 Arch_1593 Arch_1593 Arch_1593 1725677 1726630 - TatD-related deoxyribonuclease COGs: COG0084 Mg-dependent DNase~InterPro IPR001130:IPR012278~KEGG: bcv:Bcav_0972 hydrolase%2C TatD family~PFAM: TatD-related deoxyribonuclease~SPTR: D0WQ46 Putative deoxyribonuclease~PFAM: TatD related DNase~TIGRFAM: hydrolase%2C TatD family gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1593 Arch_1594 Arch_1594 Arch_1594 1726641 1728446 - methionyl-tRNA synthetase COGs: COG0143 Methionyl-tRNA synthetase~InterProIPR009080:IPR014758:IPR015413:IPR002304:IPR 014729~KEGG: bfa:Bfae_17560 methionyl-tRNA synthetase~PFAM: tRNA synthetase class I (M)~PRIAM: Methionine--tRNA ligase~SPTR: D0WQ47 Methionine--tRNA ligase~TIGRFAM: methionyl-tRNA synthetase~PFAM: tRNA synthetases class I (M)~TIGRFAM: methionyl-tRNA synthetase gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1594 Arch_1595 Arch_1595 Arch_1595 1728575 1729609 + isochorismatase hydrolase COGs: COG1335 Amidase related to nicotinamidase~InterPro IPR000868~KEGG: jde:Jden_1959 isochorismatase hydrolase~PFAM: isochorismatase hydrolase~SPTR: D0WQ48 Pyrazinamidase/nicotinamidase~PFAM: Isochorismatase family gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1595 Arch_1596 Arch_1596 Arch_1596 1729724 1730128 - Domain of unknown function DUF1801 COGs: COG5646 conserved hypothetical protein~InterPro IPR014922~KEGG: cdi:DIP0112 hypothetical protein~PFAM: Domain of unknown function DUF1801~SPTR: Q6NKC1 Putative uncharacterized protein~PFAM: Domain of unknown function (DU1801) gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1596 Arch_1597 Arch_1597 Arch_1597 1730137 1732398 - MMPL domain protein COGs: COG2409 drug exporter of the RND superfamily~InterPro IPR000731:IPR004869~KEGG: ach:Achl_3628 MmpL domain protein~PFAM: MMPL domain protein~SPTR: C1RG49 Predicted RND superfamily drug exporter~PFAM: MMPL family gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1597 Arch_1598 Arch_1598 Arch_1598 1732410 1733243 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase COGs: COG0313 methyltransferase~InterPro IPR018063:IPR000878:IPR008189:IPR014777~KEGG: bcv:Bcav_0951 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase~PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase~SPTR: A7BEV4 Putative uncharacterized protein~PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases~TIGRFAM: conserved hypothetical protein TIGR00096 gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1598 Arch_1599 Arch_1599 Arch_1599 1733245 1733598 - protein of unknown function DUF1025 COGs: COG3824 conserved hypothetical protein~InterPro IPR010428~KEGG: lxx:Lxx14190 hypothetical protein~PFAM: protein of unknown function DUF1025~SPTR: Q6AEG1 Putative uncharacterized protein~PFAM: Domain of unknown function (DUF1025) gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1599 Arch_1600 Arch_1600 Arch_1600 1733743 1734093 + Domain of unknown function DUF1791 COGs: COG1416 conserved hypothetical protein~InterPro IPR014865~KEGG: chy:CHY_1266 hypothetical protein~PFAM: Domain of unknown function DUF1791~SPTR: Q3ACN4 Putative uncharacterized protein~PFAM: DsrE/DsrF-like family gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1600 Arch_1601 Arch_1601 Arch_1601 1734162 1735079 + ABC transporter related protein COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: jde:Jden_0115 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C7R5B2 ABC transporter related~PFAM: ABC transporter gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1601 Arch_1602 Arch_1602 Arch_1602 1735081 1735836 + ABC-2 type transporter KEGG: xce:Xcel_1905 ABC-2 type transporter~SPTR: D1BT82 ABC-2 type transporter gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1602 Arch_1603 Arch_1603 Arch_1603 1735883 1736962 + integral membrane sensor signal transduction histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR003594:IPR011712~KEGG: kse:Ksed_01000 signal transduction histidine kinase~PFAM: histidine kinase dimerisation and phosphoacceptor region%3B ATP-binding region ATPase domain protein~SPTR: C2BTB8 Two component system histidine kinase~PFAM: Histidine kinase%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1603 Arch_1604 Arch_1604 Arch_1604 1736959 1737564 + two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterProIPR001789:IPR000792:IPR011006:IPR016032:IPR 011991~KEGG: rer:RER_47120 NarL family two-component response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: response regulator receiver%3B regulatory protein LuxR~SPTR: C0ZN12 Putative NarL family two-component response regulator~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1604 Arch_1605 Arch_1605 Arch_1605 1737574 1738680 - rRNA (guanine-N(2)-)-methyltransferase COGs: COG2813 16S RNA G1207 methylase RsmC~InterPro IPR002052:IPR007848~KEGG: bfa:Bfae_23400 16S RNA G1207 methylase RsmC~PFAM: methyltransferase small~PRIAM: rRNA (guanine-N(2)-)-methyltransferase~SPTR: C8NTY6 Methyltransferase small domain protein~PFAM: Methyltransferase small domain gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1605 Arch_1606 Arch_1606 Arch_1606 1738725 1739102 + hypothetical protein KEGG: reh:H16_A3557 hypothetical protein~SPTR: B8KDB1 Putative uncharacterized protein~PFAM: Uncharacterized protein conserved in bacteria (DUF2314) gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1606 Arch_1607 Arch_1607 Arch_1607 1739106 1739570 - hypothetical protein KEGG: rop:ROP_67890 putative hydrolase~SPTR: C0VYQ3 Possible acyl-CoA thioester hydrolase gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1607 Arch_1608 Arch_1608 Arch_1608 1739574 1740497 - hypothetical protein KEGG: bcv:Bcav_0907 hypothetical protein~SPTR: D0WJQ9 Putative uncharacterized protein (Fragment) gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1608 Arch_1609 Arch_1609 Arch_1609 1740604 1741815 - molybdenum cofactor synthesis domain protein COGs: COG0303 Molybdopterin biosynthesis enzyme~InterPro IPR005110:IPR001453:IPR005111:IPR020817~KEGG: bcv:Bcav_0905 molybdenum cofactor synthesis domain protein~PFAM: MoeA domain protein domain I and II%3B molybdopterin binding domain%3B MoeA domain protein domain IV~SPTR: A7B9R2 Putative uncharacterized protein~TIGRFAM: molybdenum cofactor synthesis domain protein~PFAM: Probable molybdopterin binding domain%3B MoeA N-terminal region (domain I and II)%3B MoeA C-terminal region (domain IV)~TIGRFAM: molybdenum cofactor synthesis domain gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1609 Arch_1610 Arch_1610 Arch_1610 1741908 1742525 + 5-formyltetrahydrofolate cyclo-ligase COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase~InterPro IPR002698~KEGG: jde:Jden_1969 5-formyltetrahydrofolate cyclo-ligase~PFAM: 5-formyltetrahydrofolate cyclo-ligase~SPTR: D0WJR1 5-formyltetrahydrofolate cyclo-ligase~PFAM: 5-formyltetrahydrofolate cyclo-ligase family~TIGRFAM: 5%2C10-methenyltetrahydrofolate synthetase gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1610 Arch_1611 Arch_1611 Arch_1611 1742656 1743267 + SAF domain protein InterPro IPR013974~KEGG: bcv:Bcav_0901 SAF domain protein~PFAM: SAF domain protein~SPTR: D0WJR4 Flp pilus assembly protein CpaB family protein~PFAM: SAF domain~TIGRFAM: Flp pilus assembly protein CpaB gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1611 Arch_1612 Arch_1612 Arch_1612 1743315 1743689 + large conductance mechanosensitive channel protein COGs: COG1970 Large-conductance mechanosensitive channel~InterPro IPR019823:IPR001185~KEGG: mlu:Mlut_16810 MscL large conductance mechanosensitive channel protein~PFAM: large-conductance mechanosensitive channel~SPTR: C5CC27 MscL large conductance mechanosensitive channel protein~TIGRFAM: large conductance mechanosensitive channel protein~PFAM: Large-conductance mechanosensitive channel%2C MscL~TIGRFAM: large conductance mechanosensitive channel protein gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1612 Arch_1613 Arch_1613 Arch_1613 1743747 1743965 - hypothetical protein KEGG: nfa:nfa19070 hypothetical protein~SPTR: D0WJR6 Putative uncharacterized protein gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1613 Arch_1614 Arch_1614 Arch_1614 1743958 1748163 - DNA helicase KEGG: bcv:Bcav_0899 DNA helicase~SPTR: D0WJR7 Putative uncharacterized protein gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1614 Arch_1615 Arch_1615 Arch_1615 1748199 1749107 - Rhodanese domain protein COGs: COG1054 sulfurtransferase~InterPro IPR001763~KEGG: cjk:jk0240 hypothetical protein~PFAM: Rhodanese domain protein~SMART: Rhodanese domain protein~SPTR: C0W1I1 Possible sulfurtransferase~PFAM: Rhodanese-like domain gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1615 Arch_1616 Arch_1616 Arch_1616 1749572 1750504 - UspA domain protein COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein~InterPro IPR006015:IPR006016:IPR014729~KEGG: bcv:Bcav_0884 UspA domain protein~PFAM: UspA domain protein~SPTR: D0WJS1 Putative universal stress protein~PFAM: Universal stress protein family gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1616 Arch_1617 Arch_1617 Arch_1617 1750664 1751386 - NLP/P60 protein COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein)~InterPro IPR006162:IPR000064~KEGG: bcv:Bcav_0883 NLP/P60 protein~PFAM: NLP/P60 protein~SPTR: C0W426 NLP/P60 family protein~PFAM: NlpC/P60 family gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1617 Arch_1618 Arch_1618 Arch_1618 1751613 1752290 - iron (metal) dependent repressor%2C DtxR family COGs: COG1321 Mn-dependent transcriptional regulator protein~InterPro IPR001367:IPR008988:IPR007167:IPR011991~KEGG: jde:Jden_1989 iron (metal) dependent repressor%2C DtxR family~PFAM: iron dependent repressor%3B FeoA family protein~SMART: iron dependent repressor~SPTR: C7R0G3 Iron (Metal) dependent repressor%2C DtxR family~PFAM: FeoA domain%3B Iron dependent repressor%2C metal binding and dimerisation domain%3B Iron dependent repressor%2C N-terminal DNA binding domain gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1618 Arch_1619 Arch_1619 Arch_1619 1752528 1754000 - Xanthine/uracil/vitamin C permease COGs: COG2252 Permease~InterPro IPR006043~KEGG: kra:Krad_1382 xanthine/uracil/vitamin C permease~PFAM: Xanthine/uracil/vitamin C permease~SPTR: D0WJT1 Xanthine/uracil permease family protein~PFAM: Permease family gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1619 Arch_1620 Arch_1620 Arch_1620 1754093 1755337 - mannose-6-phosphate isomerase%2C class I COGs: COG1482 Phosphomannose isomerase~InterProIPR018050:IPR011051:IPR016305:IPR001250:IPR 014710~KEGG: bcv:Bcav_0860 mannose-6-phosphate isomerase%2C class I~PFAM: mannose-6-phosphate isomerase type I~PRIAM: Mannose-6-phosphate isomerase~SPTR: D0WJT2 Mannose-6-phosphate isomerase%2C class I~TIGRFAM: mannose-6-phosphate isomerase%2C class I~PFAM: Phosphomannose isomerase type I~TIGRFAM: mannose-6-phosphate isomerase%2C class I gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1620 Arch_1621 Arch_1621 Arch_1621 1755341 1756138 - conserved hypothetical protein KEGG: kra:Krad_3581 hypothetical protein~SPTR: D0WJT3 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3027) gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1621 Arch_1622 Arch_1622 Arch_1622 1756122 1756553 - cold-shock DNA-binding domain protein COGs: COG1278 Cold shock protein~InterPro IPR011129:IPR016027:IPR002059:IPR012340~KEGG: bcv:Bcav_0848 cold-shock DNA-binding domain protein~PFAM: Cold-shock protein DNA-binding~SMART: Cold shock protein~SPTR: D0WJT4 Cold-shock domain protein~PFAM: 'Cold-shock' DNA-binding domain gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1622 Arch_1623 Arch_1623 Arch_1623 1756702 1758621 + Chromogranin/secretogranin InterPro IPR001990~KEGG: xce:Xcel_2933 hypothetical protein~PFAM: Chromogranin/secretogranin~SPTR: D0WJT5 Putative secreted protein gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1623 Arch_1624 Arch_1624 Arch_1624 1758703 1759440 + phage shock protein A%2C PspA COGs: COG1842 Phage shock protein A (IM30) suppresses sigma54-dependent transcription~InterPro IPR007157~KEGG: xce:Xcel_2934 phage shock protein A%2C PspA~PFAM: PspA/IM30 family protein~SPTR: D0WJT6 PspA/IM30 family protein~PFAM: PspA/IM30 family gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1624 Arch_1625 Arch_1625 Arch_1625 1759593 1760189 + conserved hypothetical protein KEGG: jde:Jden_2050 hypothetical protein~SPTR: C0W439 Putative uncharacterized protein~PFAM: Protein of unknown function DUF88 gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1625 Arch_1626 Arch_1626 Arch_1626 1760231 1760977 + two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR011006:IPR001867~KEGG: xce:Xcel_2937 two component transcriptional regulator%2C winged helix family~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver~SPTR: D0WJT7 DNA-binding response regulator PhoP~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1626 Arch_1627 Arch_1627 Arch_1627 1760980 1762509 + integral membrane sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterProIPR003660:IPR003661:IPR003594:IPR009082:IPR 005467:IPR004358~KEGG: kra:Krad_3621 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B histidine kinase HAMP region domain protein~SPTR: D0WJT8 PhoR protein~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1627 Arch_1628 Arch_1628 Arch_1628 1762430 1763143 - phospholipid/glycerol acyltransferase COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase~InterPro IPR002123~KEGG: pac:PPA2237 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase~SPTR: D0WJT9 Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase~PFAM: Acyltransferase~TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1628 Arch_1629 Arch_1629 Arch_1629 1763140 1763871 - short-chain dehydrogenase/reductase SDR COGs: COG0300 Short-chain dehydrogenase of various substrate specificities~InterPro IPR016040:IPR002347:IPR002198~KEGG: bfa:Bfae_27130 short-chain dehydrogenase of unknown substrate specificity~PFAM: short-chain dehydrogenase/reductase SDR~SPTR: D0WJU0 Oxidoreductase%2C short-chain dehydrogenase/reductase family~PFAM: short chain dehydrogenase gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1629 Arch_1630 Arch_1630 Arch_1630 1764080 1765285 + conserved hypothetical protein COGs: COG4339 conserved hypothetical protein~KEGG: xce:Xcel_2939 hypothetical protein~SPTR: D0WJU1 Putative uncharacterized protein gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1630 Arch_1631 Arch_1631 Arch_1631 1765543 1767165 - chaperonin GroEL COGs: COG0459 Chaperonin GroEL (HSP60 family)~InterPro IPR018370:IPR002423:IPR001844~KEGG: bcv:Bcav_0821 chaperonin GroEL~PFAM: chaperonin Cpn60/TCP-1~SPTR: C0W445 60 kDa chaperonin~TIGRFAM: chaperonin GroEL~PFAM: TCP-1/cpn60 chaperonin family~TIGRFAM: chaperonin GroL gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1631 Arch_1632 Arch_1632 Arch_1632 1767433 1768062 - conserved hypothetical protein KEGG: bcv:Bcav_0815 hypothetical protein~SPTR: D0WJU8 Putative uncharacterized protein gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1632 Arch_1633 Arch_1633 Arch_1633 1768119 1768382 - conserved hypothetical protein KEGG: sgr:SGR_4058 hypothetical protein~SPTR: B1VSD3 Putative uncharacterized protein~PFAM: Protein of unknown function (DUF3263) gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1633 Arch_1634 Arch_1634 Arch_1634 1768432 1769103 + uracil-DNA glycosylase COGs: COG0692 Uracil DNA glycosylase~InterPro IPR018085:IPR005122:IPR002043~KEGG: lxx:Lxx18890 uracil-DNA glycosylase~PFAM: Uracil-DNA glycosylase superfamily~SPTR: D0WJV1 Uracil-DNA glycosylase~TIGRFAM: uracil-DNA glycosylase~PFAM: Uracil DNA glycosylase superfamily~TIGRFAM: uracil-DNA glycosylase gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1634 Arch_1635 Arch_1635 Arch_1635 1769111 1770397 - hypothetical protein KEGG: jde:Jden_1612 LPXTG-motif cell wall anchor domain protein~SPTR: C7R5I7 LPXTG-motif cell wall anchor domain protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1635 Arch_1636 Arch_1636 Arch_1636 1770509 1771699 - 2-amino-3-ketobutyrate coenzyme A ligase COGs: COG0156 7-keto-8-aminopelargonate synthetase~InterProIPR001917:IPR015424:IPR004839:IPR011282:IPR 015421~KEGG: kse:Ksed_10060 2-amino-3-ketobutyrate coenzyme A ligase~PFAM: aminotransferase class I and II~PRIAM: Glycine C-acetyltransferase~SPTR: C7NG51 2-amino-3-ketobutyrate coenzyme A ligase~TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase~PFAM: Aminotransferase class I and II~TIGRFAM: 8-amino-7-oxononanoate synthase%3B 2-amino-3-ketobutyrate coenzyme A ligase gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1636 Arch_1637 Arch_1637 Arch_1637 1771699 1772757 - Alcohol dehydrogenase GroES domain protein COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase~InterProIPR002328:IPR011032:IPR016040:IPR013154:IPR 013149~KEGG: kse:Ksed_10170 L-threonine 3-dehydrogenase~PFAM: Alcohol dehydrogenase GroES domain protein%3B Alcohol dehydrogenase zinc-binding domain protein~SPTR: C0W4J4 L-threonine 3-dehydrogenase~PFAM: Alcohol dehydrogenase GroES-like domain%3B Zinc-binding dehydrogenase~TIGRFAM: L-threonine 3-dehydrogenase gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1637 Arch_1638 Arch_1638 Arch_1638 1772880 1774250 + H(+)-transporting two-sector ATPase COGs: COG0168 Trk-type K+ transport systems membrane components~InterPro IPR003445~KEGG: krh:KRH_15110 putative cation transporter~PFAM: cation transporter~PRIAM: H(+)-transporting two-sector ATPase~SPTR: C2BVK7 Possible H(+)-transporting two-sector ATPase~PFAM: Cation transport protein~TIGRFAM: potassium uptake protein%2C TrkH family gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1638 Arch_1639 Arch_1639 Arch_1639 1774266 1774934 + TrkA-N domain protein COGs: COG0569 K+ transport systems NAD-binding component~InterPro IPR016040:IPR003148:IPR006037~KEGG: sro:Sros_6144 TrkA-N~PFAM: TrkA-N domain protein%3B TrkA-C domain protein~SPTR: D0YQI4 TrkA-N~PFAM: TrkA-N domain%3B TrkA-C domain gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1639 Arch_1640 Arch_1640 Arch_1640 1775127 1776569 - amino acid carrier protein COGs: COG1115 Na+/alanine symporter~InterPro IPR001463~KEGG: jde:Jden_1694 amino acid carrier protein~PFAM: sodium:alanine symporter~SPTR: C0W2K9 AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter~TIGRFAM: amino acid carrier protein~PFAM: Sodium:alanine symporter family~TIGRFAM: amino acid carrier protein gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1640 Arch_1641 Arch_1641 Arch_1641 1776996 1777844 - DSBA oxidoreductase InterPro IPR012336:IPR001853:IPR012335~KEGG: xce:Xcel_2947 DsbA oxidoreductase~PFAM: DSBA oxidoreductase~SPTR: D0WJV3 Putative uncharacterized protein~PFAM: DSBA-like thioredoxin domain gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1641 Arch_1642 Arch_1642 Arch_1642 1777899 1779530 - serine/threonine protein kinase COGs: COG0515 Serine/threonine protein kinase~InterProIPR017441:IPR008271:IPR020635:IPR002290:IPR 011009:IPR000719:IPR017442~KEGG: bcv:Bcav_0797 serine/threonine protein kinase~PFAM: Serine/threonine-protein kinase-like domain~SMART: serine/threonine protein kinase%3B Tyrosine-protein kinase%2C subgroup%2C catalytic domain~SPTR: D0WJV4 Putative tyrosine protein kinase:Serine/threonine protein kinase~PFAM: Protein kinase domain gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1642 Arch_1643 Arch_1643 Arch_1643 1779756 1780883 + ABC transporter related protein COGs: COG3839 ABC-type sugar transport systems ATPase components~InterPro IPR017871:IPR003593:IPR008995:IPR003439~KEGG: xce:Xcel_2950 ABC transporter related protein~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: C0W453 Glycerol-3-phosphate-transporting ATPase~PFAM: ABC transporter gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1643 Arch_1644 Arch_1644 Arch_1644 1780972 1782279 + conserved hypothetical protein KEGG: bcv:Bcav_0782 hypothetical protein~SPTR: C0VYH1 Putative uncharacterized protein~PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1644 Arch_1645 Arch_1645 Arch_1645 1782379 1783005 - recombination protein RecR COGs: COG0353 Recombinational DNA repair protein (RecF pathway)~InterPro IPR006154:IPR000093:IPR015967:IPR006171~KEGG: xce:Xcel_0272 recombination protein RecR~PFAM: TOPRIM domain protein%3B Zinc finger C4-type%2C RecR~SMART: Toprim sub domain protein~SPTR: D0WJW2 Recombination protein RecR~TIGRFAM: recombination protein RecR~PFAM: Toprim domain%3B RecR protein~TIGRFAM: recombination protein RecR gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1645 Arch_1646 Arch_1646 Arch_1646 1783005 1785551 - DNA polymerase III%2C subunits gamma and tau COGs: COG2812 DNA polymerase III gamma/tau subunits~InterPro IPR003593:IPR008921:IPR003959:IPR012763~KEGG: rsa:RSal33209_3356 DNA polymerase III subunits gamma and tau~PFAM: AAA ATPase central domain protein~SMART: AAA ATPase~SPTR: A7BAA1 Putative uncharacterized protein~TIGRFAM: DNA polymerase III%2C subunits gamma and tau~PFAM: ATPase family associated with various cellular activities (AAA)%3B DNA polymerase III subunits gamma and tau domain III~TIGRFAM: DNA polymerase III%2C subunits gamma and tau gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1646 Arch_1647 Arch_1647 Arch_1647 1786453 1787757 - major facilitator superfamily MFS_1 InterPro IPR016196:IPR011701~KEGG: bcv:Bcav_0875 major facilitator superfamily MFS_1~PFAM: major facilitator superfamily MFS_1~SPTR: C2KTI5 Major facilitator transporter~PFAM: Bacterial protein of unknown function (DUF894) gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1647 Arch_1648 Arch_1648 Arch_1648 1787939 1788760 - Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR012337:IPR001584~KEGG: kse:Ksed_22000 transposase~PFAM: Integrase catalytic region~SPTR: A7B9Y7 Putative uncharacterized protein~PFAM: Integrase core domain gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1648 Arch_1649 Arch_1649 Arch_1649 1788814 1789095 - transposase IS3/IS911 family protein InterPro IPR002514~KEGG: kse:Ksed_22010 transposase~PFAM: transposase IS3/IS911 family protein~SPTR: C2BM30 ISMyma01 transposase~PFAM: Transposase gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1649 Arch_1650 Arch_1650 Arch_1650 1789111 1789350 - pseudogene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1650 Arch_1651 Arch_1651 Arch_1651 1789507 1789914 + hypothetical protein KEGG: KLTH0G04994p%3B K10842 CDK-activating kinase assembly factor MAT1~SPTR: C5DM07 KLTH0G04994p gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1651 Arch_1652 Arch_1652 Arch_1652 1789965 1790291 + hypothetical protein KEGG: eca:ECA1108 exonuclease~SPTR: Q6D867 Exonuclease gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1652 Arch_1653 Arch_1653 Arch_1653 1790569 1790934 + pseudogene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1653 Arch_1654 Arch_1654 Arch_1654 1791036 1791608 + conserved hypothetical protein KEGG: bcv:Bcav_0533 hypothetical protein~SPTR: D0WJX6 Cell envelope-related transcriptional attenuator gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1654 Arch_1655 Arch_1655 Arch_1655 1791613 1792977 - uracil-xanthine permease COGs: COG2233 Xanthine/uracil permease~InterPro IPR006043:IPR006042~KEGG: bcv:Bcav_0274 uracil-xanthine permease~PFAM: Xanthine/uracil/vitamin C permease~SPTR: C2BTD4 NCS2 family nucleobase:cation symporter-2~TIGRFAM: uracil-xanthine permease~PFAM: Permease family~TIGRFAM: uracil-xanthine permease gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1655 Arch_1656 Arch_1656 Arch_1656 1793078 1793599 - protein of unknown function DUF437 COGs: COG4405 conserved hypothetical protein~InterPro IPR015947:IPR007374~KEGG: lmc:Lm4b_02824 hypothetical protein~PFAM: protein of unknown function DUF437~SPTR: D0WJY0 Putative uncharacterized protein~PFAM: ASCH domain gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1656 Arch_1657 Arch_1657 Arch_1657 1793602 1794867 - hypothetical protein KEGG: rsa:RSal33209_2038 putative proteasome component~SPTR: D0WJY1 50S ribosomal protein L12P gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1657 Arch_1658 Arch_1658 Arch_1658 1794874 1795857 - RNA methyltransferase%2C TrmH family%2C group 3 COGs: COG0566 rRNA methylase~InterPro IPR013123:IPR001537:IPR004441~KEGG: xce:Xcel_2952 RNA methyltransferase%2C TrmH family%2C group 3~PFAM: tRNA/rRNA methyltransferase (SpoU)%3B RNA 2-O ribose methyltransferase substrate binding~SPTR: D0WJY2 RNA methyltransferase%2C TrmH family%2C group 3~TIGRFAM: RNA methyltransferase%2C TrmH family%2C group 3~PFAM: SpoU rRNA Methylase family%3B RNA 2'-O ribose methyltransferase substrate binding~TIGRFAM: rRNA methylase%2C putative%2C group 3 gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1658 Arch_1659 Arch_1659 Arch_1659 1795857 1797284 - cysteinyl-tRNA synthetase COGs: COG0215 Cysteinyl-tRNA synthetase~InterProIPR009080:IPR015803:IPR015273:IPR002308:IPR 014729~KEGG: bcv:Bcav_0780 cysteinyl-tRNA synthetase~PFAM: Cysteinyl-tRNA synthetase class Ia %3B Cysteinyl-tRNA synthetase class Ia DALR~PRIAM: Cysteine--tRNA ligase~SPTR: D0WJY3 Cysteine--tRNA ligase~TIGRFAM: cysteinyl-tRNA synthetase~PFAM: tRNA synthetases class I (C) catalytic domain%3B DALR domain~TIGRFAM: cysteinyl-tRNA synthetase gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1659 Arch_1660 Arch_1660 Arch_1660 1797483 1798874 + major facilitator superfamily MFS_1 COGs: COG2270 Permease of the major facilitator superfamily~InterPro IPR016196:IPR011701~KEGG: pac:PPA1044 major facilitator superfamily permease~PFAM: major facilitator superfamily MFS_1~SPTR: D0WJY4 Major facilitator family transporter~PFAM: Vacuole effluxer Atg22 like gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1660 Arch_1661 Arch_1661 Arch_1661 1798900 1799391 - 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase~InterPro IPR003526~KEGG: fre:Franean1_0364 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase~PFAM: MECDP-synthase~SPTR: D0WJY6 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase~TIGRFAM: 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase~PFAM: YgbB family~TIGRFAM: 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1661 Arch_1662 Arch_1662 Arch_1662 1799395 1800093 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase~InterPro IPR018294:IPR001228~KEGG: art:Arth_0727 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase~PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~SPTR: A0JSV5 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase~TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase~PFAM: Uncharacterized protein family UPF0007~TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1662 Arch_1663 Arch_1663 Arch_1663 1800166 1800711 - transcriptional regulator%2C CarD family COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD~InterPro IPR003711~KEGG: ace:Acel_0078 CarD family transcriptional regulator~PFAM: transcription factor CarD~SPTR: D0WJY8 Transcriptional regulator%2C CarD family~PFAM: CarD-like/TRCF domain gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1663 Arch_1664 Arch_1664 Arch_1664 1800786 1801475 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR011006:IPR016032:IPR001867~KEGG: mlu:Mlut_03750 PhoP-like protein~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver~SPTR: C0W5A5 Response regulator~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1664 Arch_1665 Arch_1665 Arch_1665 1801472 1802653 - histidine kinase COGs: COG5002 Signal transduction histidine kinase~InterProIPR003661:IPR003594:IPR009082:IPR005467:IPR 004358~KEGG: bcv:Bcav_0770 histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SPTR: C5BYS3 Sensor protein~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1665 Arch_1666 Arch_1666 Arch_1666 1802797 1803441 + phosphate uptake regulator%2C PhoU COGs: COG0704 Phosphate uptake regulator~InterPro IPR008170~KEGG: bcv:Bcav_0769 phosphate uptake regulator%2C PhoU~PFAM: PhoU family protein~SPTR: C0W5A3 Phosphate uptake regulator~TIGRFAM: phosphate transport system regulatory protein PhoU~PFAM: PhoU domain~TIGRFAM: phosphate transport system regulatory protein PhoU gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1666 Arch_1667 Arch_1667 Arch_1667 1803542 1804282 - phosphoglycerate mutase 1 family COGs: COG0588 Phosphoglycerate mutase 1~InterPro IPR001345:IPR013078:IPR005952~KEGG: xce:Xcel_2972 phosphoglycerate mutase 1 family~PFAM: Phosphoglycerate mutase~SPTR: C0W5A2 2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase~TIGRFAM: phosphoglycerate mutase 1 family~PFAM: Phosphoglycerate mutase family~TIGRFAM: phosphoglycerate mutase%2C BPG-dependent%2C family 1 gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1667 Arch_1668 Arch_1668 Arch_1668 1804469 1804879 + protein of unknown function DUF307 COGs: COG3304 membrane protein~InterPro IPR005185~KEGG: cef:CE0923 hypothetical protein~PFAM: protein of unknown function DUF307~SPTR: Q8FR43 Putative uncharacterized protein~manually curated~PFAM: Domain of unknown function (DUF307) gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1668 Arch_1669 Arch_1669 Arch_1669 1805014 1805184 + conserved hypothetical protein KEGG: xce:Xcel_1971 hypothetical protein~SPTR: C2CQM5 Putative uncharacterized protein gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1669 Arch_1670 Arch_1670 Arch_1670 1805191 1806807 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase COGs: COG0446 NAD(FAD)-dependent dehydrogenase~InterPro IPR001763:IPR016156:IPR013027:IPR004099~KEGG: cdi:DIP1748 putative oxidase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B pyridine nucleotide-disulphide oxidoreductase dimerisation region%3B Rhodanese domain protein~SMART: Rhodanese domain protein~SPTR: C2CQM4 CoA-disulfide reductase~PFAM: Pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation domain%3B Rhodanese-like domain gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1670 Arch_1671 Arch_1671 Arch_1671 1806839 1807093 + protein of unknown function DUF156 COGs: COG1937 conserved hypothetical protein~InterPro IPR003735~KEGG: cdi:DIP1749 hypothetical protein~PFAM: protein of unknown function DUF156~SPTR: Q6NFY6 Putative uncharacterized protein~PFAM: Uncharacterised BCR%2C COG1937 gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1671 Arch_1672 Arch_1672 Arch_1672 1807194 1808690 - permease for cytosine/purines uracil thiamine allantoin COGs: COG1457 Purine-cytosine permease and related protein~InterPro IPR001248~KEGG: bfa:Bfae_30600 purine-cytosine permease-like transporter~PFAM: permease for cytosine/purines uracil thiamine allantoin~SPTR: C7MAT4 Purine-cytosine permease-like transporter~PFAM: Permease for cytosine/purines%2C uracil%2C thiamine%2C allantoin gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1672 Arch_1673 Arch_1673 Arch_1673 1808922 1810781 + xanthine permease COGs: COG2233 Xanthine/uracil permease~InterPro IPR006042:IPR006043:IPR018020:IPR017588~KEGG: cdi:DIP1943 xanthine/uracil permeases family protein~PFAM: Xanthine/uracil/vitamin C permease%3B Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase~SPTR: Q6NFE8 Xanthine/uracil permeases family protein~TIGRFAM: xanthine permease%3B uracil-xanthine permease~PFAM: OHCU decarboxylase%3B Permease family~TIGRFAM: uracil-xanthine permease%3B xanthine permease gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1673 Arch_1674 Arch_1674 Arch_1674 1816218 1816472 - hypothetical protein KEGG: msl:Msil_2925 NADH dehydrogenase subunit H~SPTR: Q94Z18 NADH-ubiquinone oxidoreductase chain 1 gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1674 Arch_1675 Arch_1675 Arch_1675 1816770 1817078 + transcriptional regulator%2C ArsR family InterPro IPR001845:IPR011991~KEGG: nml:Namu_2556 transcriptional regulator%2C ArsR family~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR~SPTR: C8X7G0 Transcriptional regulator%2C ArsR family~PFAM: Bacterial regulatory protein%2C arsR family gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1675 Arch_1676 Arch_1676 Arch_1676 1817128 1817379 + pseudogene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1676 Arch_1677 Arch_1677 Arch_1677 1817600 1817819 + pseudogene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1677 Arch_1678 Arch_1678 Arch_1678 1818287 1819069 + integrase family protein COGs: COG4974 Site-specific recombinase XerD~InterPro IPR011010:IPR010998:IPR002104:IPR013762~KEGG: mpa:MAP2752 hypothetical protein~PFAM: integrase family protein~SPTR: B5U3A1 Gp33~PFAM: Phage integrase family gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1678 Arch_1679 Arch_1679 Arch_1679 1819072 1819848 + Cobyrinic acid ac-diamide synthase COGs: COG1192 ATPase involved in chromosome partitioning~InterPro IPR002586~KEGG: ach:Achl_4190 cobyrinic acid ac-diamide synthase~PFAM: Cobyrinic acid ac-diamide synthase~SPTR: C2BRF7 Chromosome partitioning protein transcriptional regulator~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1679 Arch_1680 Arch_1680 Arch_1680 1819877 1820218 + hypothetical protein KEGG: pis:Pisl_0752 small GTP-binding protein~SPTR: C2BRF8 Putative uncharacterized protein gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1680 Arch_1681 Arch_1681 Arch_1681 1820987 1821376 + hypothetical protein KEGG: efa:EF1057 Mn2+/Fe2+ transporter~SPTR: C0CYA1 Putative uncharacterized protein gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1681 Arch_1682 Arch_1682 Arch_1682 1821715 1822209 + hypothetical protein KEGG: jde:Jden_1429 hypothetical protein~SPTR: C7R4M4 Putative uncharacterized protein gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1682 Arch_1683 Arch_1683 Arch_1683 1822424 1822738 - hypothetical protein KEGG: ate:Athe_1507 phenylacetate--CoA ligase~SPTR: C2BRG5 Putative uncharacterized protein gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1683 Arch_1684 Arch_1684 Arch_1684 1822990 1823376 + mobilisation protein InterPro IPR008687~KEGG: lxx:Lxx07715 hypothetical protein~PFAM: mobilisation protein~SPTR: Q6AG08 Putative uncharacterized protein~PFAM: Bacterial mobilisation protein (MobC) gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1684 Arch_1685 Arch_1685 Arch_1685 1823333 1824700 + Relaxase/mobilization nuclease family protein InterPro IPR005094~KEGG: lxx:Lxx07700 mobilization protein~PFAM: Relaxase/mobilization nuclease family protein~SPTR: C2BRG6 Possible mobilization protein~PFAM: Relaxase/Mobilisation nuclease domain gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1685 Arch_1686 Arch_1686 Arch_1686 1824700 1825248 + hypothetical protein KEGG: efa:EF2329 hypothetical protein~SPTR: C2BRG7 Putative uncharacterized protein gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1686 Arch_1687 Arch_1687 Arch_1687 1825245 1826120 + hypothetical protein KEGG: lhk:LHK_01554 hypothetical protein~SPTR: A7B3X1 Putative uncharacterized protein gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1687 Arch_1688 Arch_1688 Arch_1688 1826117 1826365 + conserved hypothetical protein KEGG: hsl:OE4030F hypothetical protein~SPTR: C0D047 Sensor protein (Fragment) gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1688 Arch_1689 Arch_1689 Arch_1689 1826374 1826844 + hypothetical protein KEGG: bpu:BPUM_2986 LacI family transcriptional regulator~SPTR: B6Q5I9 Pogo transposable element%2C putative gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1689 Arch_1690 Arch_1690 Arch_1690 1826841 1828523 + TRAG family protein COGs: COG3505 Type IV secretory pathway VirD4 protein~InterPro IPR003688~KEGG: apr:Apre_1805 TraG family protein~PFAM: TRAG family protein~SPTR: C2BRH0 TraG/TraD family protein~PFAM: TraG/TraD family gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1690 Arch_1691 Arch_1691 Arch_1691 1828525 1829172 - Protein of unknown function DUF2335%2C membrane InterPro IPR019284~KEGG: ckr:CKR_2857 hypothetical protein~PFAM: Protein of unknown function DUF2335%2C membrane~SPTR: B9E5Y3 Putative uncharacterized protein~PFAM: Predicted membrane protein (DUF2335) gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1691 Arch_1692 Arch_1692 Arch_1692 1829360 1830172 - conserved hypothetical protein KEGG: bln:Blon_1670 hypothetical protein~SPTR: C2BRH1 Putative uncharacterized protein gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1692 Arch_1693 Arch_1693 Arch_1693 1830177 1831820 - Lytic transglycosylase catalytic COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains)~InterPro IPR007921:IPR008258~KEGG: sgr:SGR_3923 putative secreted transglycosylase~PFAM: Lytic transglycosylase catalytic%3B CHAP domain containing protein~SPTR: C0BU72 Putative uncharacterized protein~PFAM: Transglycosylase SLT domain%3B CHAP domain gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1693 Arch_1694 Arch_1694 Arch_1694 1831875 1834277 - transfer complex protein COGs: COG3451 Type IV secretory pathway VirB4 protein~KEGG: lxx:Lxx07680 transfer complex protein~SPTR: C2BRH4 Transfer complex protein~PFAM: Domain of unknown function DUF87 gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1694 Arch_1695 Arch_1695 Arch_1695 1834225 1834590 - hypothetical protein KEGG: bln:Blon_0504 hypothetical protein~SPTR: C2BRH5 Putative uncharacterized protein gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1695 Arch_1696 Arch_1696 Arch_1696 1834602 1834799 - conserved hypothetical protein KEGG: bln:Blon_1669 hypothetical protein~SPTR: C2BRH6 Putative uncharacterized protein gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1696 Arch_1697 Arch_1697 Arch_1697 1835007 1835813 - hypothetical protein KEGG: GA26006 gene product from transcript GA26006-RA~SPTR: B0PD48 Putative uncharacterized protein gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1697 Arch_1698 Arch_1698 Arch_1698 1835813 1836787 - hypothetical protein KEGG: cai:Caci_8591 hypothetical protein~SPTR: C2BRI0 Putative uncharacterized protein gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1698 Arch_1699 Arch_1699 Arch_1699 1836790 1837047 - hypothetical protein KEGG: pfu:PF2023 DNA invertase~SPTR: Q8TZH1 DNA invertase gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1699 Arch_1700 Arch_1700 Arch_1700 1837087 1837326 + pseudogene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1700 Arch_1701 Arch_1701 Arch_1701 1837739 1839301 - TAP domain protein InterPro IPR000073:IPR013595~KEGG: xce:Xcel_0356 TAP domain protein~PFAM: TAP domain protein%3B alpha/beta hydrolase fold~SPTR: D0WK12 Putative uncharacterized protein~PFAM: TAP-like protein gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1701 Arch_1702 Arch_1702 Arch_1702 1839328 1840530 - DNA polymerase III%2C delta prime subunit COGs: COG2812 DNA polymerase III gamma/tau subunits~KEGG: xce:Xcel_0355 DNA polymerase III%2C delta prime subunit~SPTR: D1BVC3 DNA polymerase III%2C delta prime subunit~PFAM: ATPase family associated with various cellular activities (AAA)~TIGRFAM: DNA polymerase III%2C delta' subunit gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1702 Arch_1703 Arch_1703 Arch_1703 1840527 1841186 - thymidylate kinase COGs: COG0125 Thymidylate kinase~InterPro IPR018095:IPR000062:IPR018094~KEGG: jde:Jden_2194 thymidylate kinase~PFAM: thymidylate kinase~PRIAM: dTMP kinase~SPTR: D0WK14 dTMP kinase~TIGRFAM: thymidylate kinase~PFAM: Thymidylate kinase~TIGRFAM: thymidylate kinase gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1703 Arch_1704 Arch_1704 Arch_1704 1841190 1843949 - DNA topoisomerase I COGs: COG0550 Topoisomerase IA~InterProIPR000380:IPR006154:IPR003601:IPR003602:IPR 006171:IPR013497:IPR005733:IPR013824:IPR013826~KEGG: bcv:Bcav_0657 DNA topoisomerase I~PFAM: DNA topoisomerase type IA central domain protein%3B TOPRIM domain protein~PRIAM: DNA topoisomerase~SMART: DNA topoisomerase I DNA-binding%3B DNA topoisomerase I ATP-binding%3B Toprim sub domain protein~SPTR: D0WK15 Putative DNA topoisomerase~TIGRFAM: DNA topoisomerase I~PFAM: Toprim domain%3B DNA topoisomerase~TIGRFAM: DNA topoisomerase I%2C bacterial gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1704 Arch_1705 Arch_1705 Arch_1705 1844020 1845510 - methyltransferase small COGs: COG2890 Methylase of polypeptide chain release factors~InterPro IPR002052:IPR007848~KEGG: kse:Ksed_25140 methyltransferase family protein~PFAM: methyltransferase small~SPTR: C7NG68 Methyltransferase family protein~PFAM: Methyltransferase small domain gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1705 Arch_1706 Arch_1706 Arch_1706 1845825 1846589 - anaerobic ribonucleoside-triphosphate reductase activating protein COGs: COG1180 Pyruvate-formate lyase-activating enzyme~InterPro IPR007197:IPR012840~KEGG: xce:Xcel_0151 anaerobic ribonucleoside-triphosphate reductase activating protein~PFAM: Radical SAM domain protein~SPTR: C0W488 Anaerobic ribonucleoside-triphosphate reductase activating protein~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein~PFAM: Radical SAM superfamily~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1706 Arch_1707 Arch_1707 Arch_1707 1846595 1848397 - anaerobic ribonucleoside-triphosphate reductase COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase~InterPro IPR012833~KEGG: cdi:DIP0465 anaerobic ribonucleoside triphosphate reductase~SPTR: C0W489 Anaerobic ribonucleoside triphosphate reductase~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1707 Arch_1708 Arch_1708 Arch_1708 1848661 1850997 + DEAD/DEAH box helicase domain protein COGs: COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster~InterProIPR014001:IPR001650:IPR014021:IPR011545:IPR 018973~KEGG: bcv:Bcav_0625 DEAD/DEAH box helicase domain protein~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein%3B Protein of unknown function DUF1998~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: D0WK34 ATP-dependent RNA helicase%2C DEAD/DEAH box family~PFAM: Helicase conserved C-terminal domain%3B Domain of unknown function (DUF1998)%3B DEAD/DEAH box helicase gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1708 Arch_1709 Arch_1709 Arch_1709 1850903 1851301 - hypothetical protein InterPro IPR019793~KEGG: rha:RHA1_ro04345 hypothetical protein~SPTR: Q0S8K1 Putative uncharacterized protein gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1709 Arch_1710 Arch_1710 Arch_1710 1851291 1851704 - hypothetical protein KEGG: rop:ROP_42540 hypothetical membrane protein~SPTR: C1B9Z8 Hypothetical membrane protein gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1710 Arch_1711 Arch_1711 Arch_1711 1851892 1852086 - conserved hypothetical protein KEGG: bad:BAD_0132 hypothetical protein~SPTR: D0WK38 Putative uncharacterized protein gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1711 Arch_1712 Arch_1712 Arch_1712 1852363 1852545 - hypothetical protein gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1712 Arch_1713 Arch_1713 Arch_1713 1852877 1853356 - hypothetical protein KEGG: similar to arylsulfatase b~SPTR: Q0UH41 Putative uncharacterized protein gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1713 Arch_1714 Arch_1714 Arch_1714 1853897 1854424 - type II secretion system protein KEGG: bcv:Bcav_0621 type II secretion system protein~SPTR: D0WK41 Putative integral membrane protein gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1714 Arch_1715 Arch_1715 Arch_1715 1854421 1855092 - hypothetical protein KEGG: bcv:Bcav_0620 hypothetical protein~SPTR: D0WK42 Type II secretion system protein gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1715 Arch_1716 Arch_1716 Arch_1716 1855077 1856237 - type II secretion system protein E COGs: COG4962 Flp pilus assembly protein ATPase CpaF~InterPro IPR001482~KEGG: bcv:Bcav_0619 type II secretion system protein E~PFAM: type II secretion system protein E~SPTR: D0WK43 Pilus assembly protein CpaF~PFAM: Type II/IV secretion system protein gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1716 Arch_1717 Arch_1717 Arch_1717 1856237 1857253 - hypothetical protein InterPro IPR019775~KEGG: bcv:Bcav_0618 hypothetical protein~SPTR: D0WK44 Putative septum site determining protein gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1717 Arch_1718 Arch_1718 Arch_1718 1857436 1858473 + conserved hypothetical protein KEGG: bcv:Bcav_0615 hypothetical protein~SPTR: D0WK52 Putative uncharacterized protein gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1718 Arch_1719 Arch_1719 Arch_1719 1858575 1859471 + alpha/beta hydrolase fold protein COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily)~InterPro IPR000639:IPR000073~KEGG: bcv:Bcav_0610 alpha/beta hydrolase fold protein~PFAM: alpha/beta hydrolase fold~SPTR: D0WK53 Alpha/beta hydrolase family protein~PFAM: alpha/beta hydrolase fold gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1719 Arch_1720 Arch_1720 Arch_1720 1859624 1860463 - conserved hypothetical protein KEGG: bfa:Bfae_23020 hypothetical protein~SPTR: D0YUD4 Putative uncharacterized protein gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1720 Arch_1721 Arch_1721 Arch_1721 1860755 1861435 - endonuclease III COGs: COG0177 EndoIII-related endonuclease~InterProIPR004035:IPR004036:IPR003265:IPR003651:IPR 011257:IPR005759~KEGG: sgr:SGR_3332 putative endonuclease III~PFAM: HhH-GPD family protein%3B iron-sulfur cluster loop~PRIAM: DNA-(apurinic or apyrimidinic site) lyase~SMART: HhH-GPD family protein%3B iron-sulfur cluster loop~SPTR: C9NH41 Endonuclease III~TIGRFAM: endonuclease III~PFAM: HhH-GPD superfamily base excision DNA repair protein%3B Iron-sulfur binding domain of endonuclease III%3B Helix-hairpin-helix motif~TIGRFAM: endonuclease III gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1721 Arch_1722 Arch_1722 Arch_1722 1861650 1862327 + transcriptional regulator%2C Crp/Fnr family COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase~InterProIPR000595:IPR001808:IPR018490:IPR012318:IPR 014710:IPR011991~KEGG: sgr:SGR_3333 Crp/Fnr family transcriptional regulator~PFAM: cyclic nucleotide-binding%3B regulatory protein Crp~SMART: cyclic nucleotide-binding%3B regulatory protein Crp~SPTR: D0WK55 Transcriptional regulator%2C Crp/Fnr family~PFAM: Bacterial regulatory proteins%2C crp family%3B Cyclic nucleotide-binding domain gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1722 Arch_1723 Arch_1723 Arch_1723 1862630 1863007 - hypothetical protein KEGG: hypothetical protein~SPTR: C4G126 Putative uncharacterized protein gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1723 Arch_1724 Arch_1724 Arch_1724 1863312 1863779 - Endoribonuclease L-PSP COGs: COG0251 Putative translation initiation inhibitor yjgF family~InterPro IPR013813:IPR006175~KEGG: mlu:Mlut_18300 putative translation initiation inhibitor%2C YjgF family~PFAM: Endoribonuclease L-PSP~SPTR: C5CCW1 Putative translation initiation inhibitor%2C yjgF family~PFAM: Endoribonuclease L-PSP gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1724 Arch_1725 Arch_1725 Arch_1725 1863776 1863934 - conserved hypothetical protein KEGG: sco:SCO3576 hypothetical protein~SPTR: D0WK57 Putative uncharacterized protein gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1725 Arch_1726 Arch_1726 Arch_1726 1863980 1864300 - transcription factor WhiB InterPro IPR003482~KEGG: sro:Sros_0461 transcription factor WhiB~PFAM: transcription factor WhiB~SPTR: C0W568 Transcription factor WhiB~PFAM: Transcription factor WhiB gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1726 Arch_1727 Arch_1727 Arch_1727 1864457 1866859 + Peptidoglycan glycosyltransferase COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein)~InterPro IPR012338:IPR005543:IPR001264:IPR001460~KEGG: bcv:Bcav_0604 glycosyl transferase family 51~PFAM: glycosyl transferase family 51%3B penicillin-binding protein transpeptidase%3B PASTA domain containing protein~PRIAM: Peptidoglycan glycosyltransferase~SPTR: D0WK60 Penicillin-binding protein~PFAM: Penicillin binding protein transpeptidase domain%3B Transglycosylase%3B PASTA domain gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1727 Arch_1728 Arch_1728 Arch_1728 1866856 1868151 + metallophosphoesterase COGs: COG1408 phosphohydrolase~InterPro IPR004843~KEGG: bcv:Bcav_0603 metallophosphoesterase~PFAM: metallophosphoesterase~SPTR: D0WK61 Ser/Thr protein phosphatase family protein~PFAM: Calcineurin-like phosphoesterase gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1728 Arch_1729 Arch_1729 Arch_1729 1869237 1870139 - ribokinase COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR002139:IPR011611:IPR011877~KEGG: pac:PPA1211 ribokinase family sugar kinase~PFAM: PfkB domain protein~SPTR: C8NDA0 Ribokinase~TIGRFAM: ribokinase~PFAM: pfkB family carbohydrate kinase~TIGRFAM: ribokinase gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1729 Arch_1730 Arch_1730 Arch_1730 1870142 1871161 - conserved hypothetical protein InterPro IPR003006~KEGG: pac:PPA1212 hypothetical protein~SPTR: C0W0W1 DeoX family protein gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1730 Arch_1731 Arch_1731 Arch_1731 1871171 1872532 - L-fucose transporter COGs: COG0738 Fucose permease~InterPro IPR016196:IPR011701:IPR005275~KEGG: pac:PPA1213 L-fucose permease~PFAM: major facilitator superfamily MFS_1~SPTR: D0YUD1 L-fucose:H+ symporter permease~TIGRFAM: L-fucose transporter~PFAM: Major Facilitator Superfamily~TIGRFAM: L-fucose:H+ symporter permease gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1731 Arch_1732 Arch_1732 Arch_1732 1873013 1873492 - hypothetical protein KEGG: pth:PTH_2246 abortive infection bacteriophage resistance protein~SPTR: Q0EXJ2 Abortive infection bacteriophage resistance protein~PFAM: Abi-like protein gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1732 Arch_1733 Arch_1733 Arch_1733 1873562 1874503 - transcriptional regulator%2C DeoR family COGs: COG2390 Transcriptional regulator contains sigma factor-related N-terminal domain~InterPro IPR009057:IPR007324~KEGG: krh:KRH_18930 deoxyribonucleoside regulator~PFAM: putative sugar-binding domain protein~SPTR: C0W0V8 DeoR family transcriptional regulator~PFAM: Putative sugar-binding domain gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1733 Arch_1734 Arch_1734 Arch_1734 1874681 1876438 - hypothetical protein InterPro IPR013519~KEGG: hau:Haur_4585 FG-GAP repeat-containing protein~SPTR: D0YPS4 FG-GAP repeat protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1734 Arch_1735 Arch_1735 Arch_1735 1876519 1878321 - Integrin alpha beta-propellor repeat protein InterPro IPR013519~KEGG: ITGA1%3B integrin%2C alpha 1%3B K06480 integrin alpha 1~SMART: Integrin alpha beta-propellor repeat protein~SPTR: C2KTJ5 FG-GAP repeat domain protein gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1735 Arch_1736 Arch_1736 Arch_1736 1878650 1879375 - LPXTG-motif cell wall anchor domain protein InterPro IPR008969:IPR008454:IPR019931~KEGG: dsh:Dshi_3592 hypothetical protein~PFAM: Cna B domain protein~SPTR: A8LQ85 Putative uncharacterized protein~TIGRFAM: LPXTG-motif cell wall anchor domain protein~PFAM: Cna protein B-type domain~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1736 Arch_1737 Arch_1737 Arch_1737 1879447 1879701 - membrane protein KEGG: rmu:RMDY18_05770 predicted membrane protein~SPTR: C2BVD4 Transglycosylase associated protein~PFAM: Transglycosylase associated protein gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1737 Arch_1738 Arch_1738 Arch_1738 1880156 1882516 - ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC COGs: COG0474 Cation transport ATPase~InterProIPR018303:IPR001757:IPR000695:IPR008250:IPR 005834~KEGG: mab:MAB_0962 cation-transporting ATPase E~PFAM: E1-E2 ATPase-associated domain protein%3B Haloacid dehalogenase domain protein hydrolase~SPTR: D0WK77 Cation-transporting ATPase%2C E1-E2 family~TIGRFAM: ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: E1-E2 ATPase%3B haloacid dehalogenase-like hydrolase~TIGRFAM: ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1738 Arch_1739 Arch_1739 Arch_1739 1882542 1884035 - Domain of unknown function DUF1846 COGs: COG4868 conserved hypothetical protein~InterPro IPR014999~KEGG: cur:cur_0538 hypothetical protein~PFAM: Domain of unknown function DUF1846~SPTR: B1VFF9 UPF0371 protein cu0538~PFAM: Domain of unknown function (DUF1846) gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1739 Arch_1740 Arch_1740 Arch_1740 1884260 1884934 - peptide deformylase COGs: COG0242 N-formylmethionyl-tRNA deformylase~InterPro IPR000181~KEGG: cms:CMS_1576 peptide deformylase~PFAM: formylmethionine deformylase~PRIAM: Peptide deformylase~SPTR: B0RBE6 Peptide deformylase~TIGRFAM: peptide deformylase~PFAM: Polypeptide deformylase~TIGRFAM: peptide deformylase gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1740 Arch_1741 Arch_1741 Arch_1741 1884961 1885251 + conserved hypothetical protein KEGG: gbr:Gbro_1394 hypothetical protein~SPTR: C2KMY9 Putative uncharacterized protein gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1741 Arch_1742 Arch_1742 Arch_1742 1885366 1886475 + hypothetical protein KEGG: cac:CAC1402 hypothetical protein~SPTR: C2BTX7 Putative uncharacterized protein~PFAM: Acyltransferase family gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1742 Arch_1743 Arch_1743 Arch_1743 1886709 1887347 - conserved hypothetical protein KEGG: ote:Oter_0532 hypothetical protein~SPTR: B1ZSG5 Putative uncharacterized protein gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1743 Arch_1744 Arch_1744 Arch_1744 1888166 1888597 - CMP/dCMP deaminase zinc-binding protein COGs: COG0590 Cytosine/adenosine deaminase~InterPro IPR016192:IPR016193:IPR002125~KEGG: bcv:Bcav_0518 CMP/dCMP deaminase zinc-binding~PFAM: CMP/dCMP deaminase zinc-binding~SPTR: A7BBB6 Putative uncharacterized protein~PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1744 Arch_1745 Arch_1745 Arch_1745 1888672 1889310 + uracil phosphoribosyltransferase COGs: COG0035 Uracil phosphoribosyltransferase~InterPro IPR000836:IPR005765~KEGG: bcv:Bcav_0515 uracil phosphoribosyltransferase~PFAM: phosphoribosyltransferase~SPTR: D1BKD7 Uracil phosphoribosyltransferase~TIGRFAM: uracil phosphoribosyltransferase~PFAM: Phosphoribosyl transferase domain~TIGRFAM: uracil phosphoribosyltransferase gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1745 Arch_1746 Arch_1746 Arch_1746 1889313 1890311 + alpha/beta hydrolase fold protein COGs: COG2267 Lysophospholipase~InterPro IPR000073~KEGG: bcv:Bcav_0467 hypothetical protein~PFAM: alpha/beta hydrolase fold~SPTR: D0WK88 Hydrolase%2C alpha/beta fold family domain protein~PFAM: alpha/beta hydrolase fold gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1746 Arch_1747 Arch_1747 Arch_1747 1890397 1891254 + conserved hypothetical protein KEGG: bcv:Bcav_0374 hypothetical protein~SPTR: D0WK91 Putative uncharacterized protein gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1747 Arch_1748 Arch_1748 Arch_1748 1891528 1892301 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: bcv:Bcav_0375 glycosyl transferase family 2~PFAM: glycosyl transferase family 2~SPTR: D0WK92 Glycosyltransferase%2C group 2 family~PFAM: Glycosyl transferase family 2 gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1748 Arch_1749 Arch_1749 Arch_1749 1892442 1893368 + transcriptional regulator%2C LuxR family InterPro IPR000792:IPR016032:IPR011991~KEGG: sco:SCO1353 transcriptional regulator~PFAM: regulatory protein LuxR~SMART: regulatory protein LuxR~SPTR: Q7WWP4 Putative transcriptional regulator~PFAM: Bacterial regulatory proteins%2C luxR family gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1749 Arch_1750 Arch_1750 Arch_1750 1893510 1895750 - conserved hypothetical protein KEGG: bcv:Bcav_0376 hypothetical protein~SPTR: D0WK97 Putative uncharacterized protein gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1750 Arch_1751 Arch_1751 Arch_1751 1895750 1896910 - diacylglycerol kinase catalytic region COGs: COG1597 Sphingosine kinase~InterPro IPR001206~KEGG: bcv:Bcav_0378 diacylglycerol kinase catalytic region~PFAM: diacylglycerol kinase catalytic region~SPTR: D0WKA0 Putative diacylglycerol kinase catalytic domain protein~PFAM: Diacylglycerol kinase catalytic domain gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1751 Arch_1752 Arch_1752 Arch_1752 1897016 1898293 + seryl-tRNA synthetase COGs: COG0172 Seryl-tRNA synthetase~InterProIPR010978:IPR006195:IPR018156:IPR015866:IPR 002314:IPR002317~KEGG: xce:Xcel_3242 seryl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Seryl-tRNA synthetase%2C class IIa-like~PRIAM: Serine--tRNA ligase~SPTR: D0WKA1 Serine--tRNA ligase~TIGRFAM: seryl-tRNA synthetase~PFAM: Seryl-tRNA synthetase N-terminal domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: seryl-tRNA synthetase gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1752 Arch_1753 Arch_1753 Arch_1753 1898290 1899234 + HAD-superfamily hydrolase%2C subfamily IIB COGs: COG0561 hydrolase of the HAD superfamily~InterPro IPR000150:IPR013200:IPR006379~KEGG: kra:Krad_0250 HAD-superfamily hydrolase%2C subfamily IIB~PFAM: Haloacid dehalogenase domain protein hydrolase type 3~SPTR: D0WKA2 Hydrolase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IIB~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily%3B HAD-superfamily hydrolase%2C subfamily IIB gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1753 Arch_1754 Arch_1754 Arch_1754 1899124 1901430 - hypothetical protein KEGG: bcv:Bcav_0376 hypothetical protein~SPTR: C0VY58 Putative uncharacterized protein gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1754 Arch_1755 Arch_1755 Arch_1755 1902356 1902832 + alkylhydroperoxidase like protein%2C AhpD family COGs: COG2128 conserved hypothetical protein~InterPro IPR003779:IPR004675~KEGG: cef:CE2276 hypothetical protein~PFAM: Carboxymuconolactone decarboxylase~SPTR: Q8FN71 Putative uncharacterized protein~TIGRFAM: alkylhydroperoxidase like protein%2C AhpD family~PFAM: Carboxymuconolactone decarboxylase family~TIGRFAM: alkylhydroperoxidase AhpD family core domain gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1755 Arch_1756 Arch_1756 Arch_1756 1903203 1903934 - CRISPR-associated protein Cas5 family InterPro IPR010147:IPR013422~KEGG: cdi:DIP2208 hypothetical protein~PFAM: CRISPR-associated protein CT1976~SPTR: Q6NEQ9 Putative uncharacterized protein~TIGRFAM: CRISPR-associated protein Cas5 family%3B CRISPR-associated protein Cas5~PFAM: CRISPR-associated protein (Cas_Cas5)~TIGRFAM: CRISPR-associated protein Cas5%2C N-terminal domain%3B CRISPR-associated protein Cas5%2C Ecoli subtype gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1756 Arch_1757 Arch_1757 Arch_1757 1903931 1904986 - CRISPR-associated protein%2C Cse4 family InterPro IPR010148~KEGG: cdi:DIP2209 hypothetical protein~PFAM: CRISPR-associated protein CT1975~SPTR: Q6NEQ8 Putative uncharacterized protein~TIGRFAM: CRISPR-associated protein%2C Cse4 family~PFAM: CT1975-like protein~TIGRFAM: CRISPR-associated protein%2C Cse4 family gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1757 Arch_1758 Arch_1758 Arch_1758 1905000 1905626 - CRISPR-associated protein%2C Cse2 family InterPro IPR013382~KEGG: cdi:DIP2210 hypothetical protein~PFAM: CRISPR-associated protein Cse2~SPTR: Q6NEQ7 Putative uncharacterized protein~TIGRFAM: CRISPR-associated protein%2C Cse2 family~PFAM: CRISPR-associated protein Cse2 (CRISPR_cse2)~TIGRFAM: CRISPR-associated protein%2C Cse2 family gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1758 Arch_1759 Arch_1759 Arch_1759 1905628 1907268 - conserved hypothetical protein KEGG: cdi:DIP2211 hypothetical protein~SPTR: Q6NEQ6 Putative uncharacterized protein~PFAM: CRISPR-associated protein Cse1 (CRISPR_cse1)~TIGRFAM: CRISPR-associated protein%2C Cse1 family gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1759 Arch_1760 Arch_1760 Arch_1760 1907518 1908216 + CRISPR-associated protein%2C Cse3 family InterPro IPR010179~KEGG: cdi:DIP2212 hypothetical protein~PFAM: CRISPR-associated protein CT1974~SPTR: Q6NEQ5 Putative uncharacterized protein~TIGRFAM: CRISPR-associated protein%2C Cse3 family~PFAM: CRISPR associated protein~TIGRFAM: CRISPR-associated protein%2C Cse3 family gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1760 Arch_1761 Arch_1761 Arch_1761 1908213 1910858 + CRISPR-associated helicase Cas3 COGs: COG1203 helicase~InterPro IPR014001:IPR001650:IPR006474~KEGG: cdi:DIP2213 putative helicase~PFAM: helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: Q6NEQ4 Putative helicase~TIGRFAM: CRISPR-associated helicase Cas3~PFAM: DEAD/DEAH box helicase~TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase%2C Streptococcus agalactiae type%3B CRISPR-associated helicase Cas3 gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1761 Arch_1762 Arch_1762 Arch_1762 1910855 1911838 + CRISPR-associated protein Cas1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR002729:IPR019851~KEGG: cdi:DIP2214 hypothetical protein~PFAM: protein of unknown function DUF48~SPTR: Q6NEQ3 Putative uncharacterized protein~TIGRFAM: CRISPR-associated protein Cas1~PFAM: CRISPR associated protein Cas1~TIGRFAM: CRISPR-associated protein Cas1%3B CRISPR-associated protein Cas1%2C ECOLI subtype gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1762 Arch_1763 Arch_1763 Arch_1763 1911804 1912118 + CRISPR-associated protein Cas2 InterPro IPR010152~KEGG: cdi:DIP2215 hypothetical protein~PFAM: CRISPR-associated protein Cas2~SPTR: Q6NEQ2 Putative uncharacterized protein~TIGRFAM: CRISPR-associated protein Cas2~PFAM: CRISPR-associated protein (Cas_Cas2CT1978)~TIGRFAM: CRISPR-associated protein Cas2%2C E. coli subfamily gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1763 Arch_1764 Arch_1764 Arch_1764 1916815 1917114 + hypothetical protein KEGG: xau:Xaut_2374 electron-transferring-flavoprotein dehydrogenase~SPTR: A7IHX4 Electron-transferring-flavoprotein dehydrogenase gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1764 Arch_1765 Arch_1765 Arch_1765 1917137 1917382 + hypothetical protein KEGG: cjk:jk1789 transposase for IS3504i~SPTR: C2CT64 IS3504a transposase gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1765 Arch_1766 Arch_1766 Arch_1766 1917440 1918100 + pseudogene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1766 Arch_1767 Arch_1767 Arch_1767 1918158 1918841 - transcriptional regulator%2C GntR family COGs: COG2188 Transcriptional regulators~InterPro IPR000524:IPR011663:IPR011991~KEGG: ami:Amir_0404 transcriptional regulator%2C GntR family~PFAM: UbiC transcription regulator-associated domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH~SPTR: C6WGQ5 Transcriptional regulator%2C GntR family~PFAM: Bacterial regulatory proteins%2C gntR family%3B UTRA domain gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1767 Arch_1768 Arch_1768 Arch_1768 1918919 1920322 - sugar transporter InterPro IPR005829:IPR016196:IPR003663:IPR005828~KEGG: mlu:Mlut_15770 MFS transporter%2C sugar porter family~PFAM: General substrate transporter~SPTR: Q0S1H0 Sugar transporter%2C MFS superfamily protein~TIGRFAM: sugar transporter~PFAM: Sugar (and other) transporter~TIGRFAM: MFS transporter%2C sugar porter (SP) family gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1768 Arch_1769 Arch_1769 Arch_1769 1920354 1922048 - Alpha/beta hydrolase fold-3 domain protein COGs: COG0657 Esterase/lipase~InterPro IPR000073:IPR013094~KEGG: ami:Amir_4661 alpha/beta hydrolase fold-3 domain protein~PFAM: Alpha/beta hydrolase fold-3 domain protein%3B alpha/beta hydrolase fold~SPTR: D0WQ59 Hydrolase%2C alpha/beta fold family~PFAM: alpha/beta hydrolase fold gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1769 Arch_1770 Arch_1770 Arch_1770 1922275 1923657 - major facilitator superfamily MFS_1 COGs: COG2271 Sugar phosphate permease~InterPro IPR016196:IPR011701~KEGG: apj:APJL_1873 sugar phosphate permease~PFAM: major facilitator superfamily MFS_1~SPTR: B0BT09 Sugar phosphate permease~PFAM: Major Facilitator Superfamily gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1770 Arch_1771 Arch_1771 Arch_1771 1924145 1925716 + anion transporter COGs: COG0471 Di- and tricarboxylate transporter~InterPro IPR001898~KEGG: cdi:DIP0179 hypothetical protein~PFAM: sodium/sulphate symporter~SPTR: C0W4H0 DASS family divalent anion:sodium (Na+) symporter~TIGRFAM: anion transporter~PFAM: Sodium:sulfate symporter transmembrane region~TIGRFAM: anion transporter gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1771 Arch_1772 Arch_1772 Arch_1772 1926085 1929768 + conserved hypothetical protein KEGG: pac:PPA1569 hypothetical protein~SPTR: C0W0X9 Putative uncharacterized protein gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1772 Arch_1773 Arch_1773 Arch_1773 1929837 1931170 - pseudogene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1773 Arch_1774 Arch_1774 Arch_1774 1931320 1932759 + domain of unknown function DUF1727 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase~InterPro IPR013221:IPR013564~KEGG: cur:cur_1907 putative UDP-N-acetylmuramyl tripeptide synthase~PFAM: domain of unknown function DUF1727%3B Mur ligase middle domain protein~SPTR: C2BT38 UDP-N-acetylmuramoylalanine--D-glutamate ligase~PFAM: Domain of unknown function (DUF1727)%3B Mur ligase middle domain gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1774 Arch_1775 Arch_1775 Arch_1775 1932756 1933577 + CobB/CobQ domain protein glutamine amidotransferase COGs: COG3442 glutamine amidotransferase~InterPro IPR017929:IPR011698~KEGG: gbr:Gbro_0441 CobB/CobQ domain protein glutamine amidotransferase~PFAM: CobB/CobQ domain protein glutamine amidotransferase~SPTR: C2BT37 Possible adenosylcobyric acid synthase%2C glutamine-hydrolyzing~PFAM: CobB/CobQ-like glutamine amidotransferase domain gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1775 Arch_1776 Arch_1776 Arch_1776 1934074 1935261 - (Uracil-5)-methyltransferase COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase~InterPro IPR010280~KEGG: kra:Krad_4319 23S rRNA (uracil-5-)-methyltransferase RumB~PFAM: (Uracil-5)-methyltransferase~SPTR: A6WG43 23S rRNA (Uracil-5-)-methyltransferase RumB~PFAM: tRNA (Uracil-5-)-methyltransferase~TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumB gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1776 Arch_1777 Arch_1777 Arch_1777 1935279 1935923 - Haloacid dehalogenase domain protein hydrolase COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005834~KEGG: svi:Svir_38090 haloacid dehalogenase superfamily protein%2C subfamily IA%2C variant 3 with third motif having dd or ED~PFAM: Haloacid dehalogenase domain protein hydrolase~SPTR: C7MRG7 Haloacid dehalogenase superfamily protein%2C subfamily IA%2C variant 3 with third motif having DD or ED~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1777 Arch_1778 Arch_1778 Arch_1778 1936077 1936322 + hypothetical protein gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1778 Arch_1779 Arch_1779 Arch_1779 1936584 1936751 + hypothetical protein gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1779 Arch_1780 Arch_1780 Arch_1780 1936871 1937692 - Integrase catalytic region COGs: COG2801 Transposase and inactivated derivatives~InterPro IPR012337:IPR001584~KEGG: kse:Ksed_22000 transposase~PFAM: Integrase catalytic region~SPTR: A7B9Y7 Putative uncharacterized protein~PFAM: Integrase core domain gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1780 Arch_1781 Arch_1781 Arch_1781 1937746 1938027 - transposase IS3/IS911 family protein InterPro IPR002514~KEGG: kse:Ksed_22010 transposase~PFAM: transposase IS3/IS911 family protein~SPTR: C2BM30 ISMyma01 transposase~PFAM: Transposase gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1781 Arch_1782 Arch_1782 Arch_1782 1938040 1938561 - pseudogene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1782 Arch_1783 Arch_1783 Arch_1783 1938580 1941003 - ATP-dependent helicase HrpB COGs: COG1643 HrpA-like helicase~InterProIPR002464:IPR014001:IPR001650:IPR014021:IPR 011545:IPR007502:IPR013689:IPR010225~KEGG: tcu:Tcur_1990 ATP-dependent helicase HrpB~PFAM: Helicase ATP-dependent domain protein%3B helicase domain protein%3B DEAD/DEAH box helicase domain protein%3B helicase-associated domain protein~SMART: DEAD-like helicase %3B helicase domain protein~SPTR: D1BHA4 ATP-dependent helicase HrpB~TIGRFAM: ATP-dependent helicase HrpB~PFAM: Helicase conserved C-terminal domain%3B ATP-dependent helicase C-terminal%3B Helicase associated domain (HA2)%3B DEAD/DEAH box helicase~TIGRFAM: ATP-dependent helicase HrpB gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1783 Arch_1784 Arch_1784 Arch_1784 1941000 1941599 - transcriptional regulator%2C TetR family InterPro IPR018247:IPR009057:IPR001647~KEGG: sco:SCO5906 transcriptional regulator~PFAM: regulatory protein TetR~SPTR: C0VWX7 Possible transcriptional regulator~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1784 Arch_1785 Arch_1785 Arch_1785 1941760 1943094 + hypothetical protein KEGG: dvm:DvMF_0774 CheA signal transduction histidine kinase~SPTR: D0WLD1 Putative SmpA/OmlA protein gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1785 Arch_1786 Arch_1786 Arch_1786 1943144 1944367 - queuine tRNA-ribosyltransferase COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase~InterPro IPR002616:IPR004803~KEGG: rha:RHA1_ro04173 queuine tRNA-ribosyltransferase~PFAM: Queuine/other tRNA-ribosyltransferase~PRIAM: tRNA-guanine transglycosylase~SPTR: D0WLD0 tRNA-guanine transglycosylase~TIGRFAM: queuine tRNA-ribosyltransferase%3B tRNA-guanine transglycosylase%2C various specificities~PFAM: Queuine tRNA-ribosyltransferase~TIGRFAM: tRNA-guanine transglycosylases%2C various specificities%3B tRNA-guanine transglycosylase%2C queuosine-34-forming gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1786 Arch_1787 Arch_1787 Arch_1787 1944387 1945214 - hypothetical protein KEGG: fnu:FN1780 hypothetical protein~SPTR: D0WLC6 Putative uncharacterized protein gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1787 Arch_1788 Arch_1788 Arch_1788 1945239 1945769 - hypothetical protein KEGG: gym:GYMC10_5038 hypothetical protein~SPTR: B7C930 Putative uncharacterized protein (Fragment) gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1788 Arch_1789 Arch_1789 Arch_1789 1945885 1946805 + conserved hypothetical protein KEGG: ckp:ckrop_1874 hypothetical protein~SPTR: C4LL85 Putative uncharacterized protein gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1789 Arch_1790 Arch_1790 Arch_1790 1946813 1947568 + DSBA oxidoreductase COGs: COG1651 Protein-disulfide isomerase~InterPro IPR012336:IPR017936:IPR001853:IPR012335~KEGG: cgt:cgR_0023 hypothetical protein~PFAM: DSBA oxidoreductase~SPTR: A4Q9U1 Putative uncharacterized protein~PFAM: DSBA-like thioredoxin domain gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1790 Arch_1791 Arch_1791 Arch_1791 1947581 1948168 + phospholipid/glycerol acyltransferase COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase~InterPro IPR002123~KEGG: bcv:Bcav_3737 phospholipid/glycerol acyltransferase~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase~SPTR: D0WLB7 Acyltransferase family protein~PFAM: Acyltransferase gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1791 Arch_1792 Arch_1792 Arch_1792 1948165 1948995 + 2%2C5-didehydrogluconate reductase COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase~InterPro IPR018170:IPR001395:IPR020471~KEGG: mgi:Mflv_4697 2%2C5-didehydrogluconate reductase~PFAM: aldo/keto reductase~PRIAM: 2%2C5-didehydrogluconate reductase~SPTR: A4TFA5 2%2C5-didehydrogluconate reductase~PFAM: Aldo/keto reductase family gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1792 Arch_1793 Arch_1793 Arch_1793 1948995 1949714 + metal dependent phosphohydrolase InterPro IPR003607:IPR006674:IPR006675~KEGG: tde:TDE1373 HD domain-containing protein~PFAM: metal-dependent phosphohydrolase HD sub domain~SMART: metal-dependent phosphohydrolase HD region~SPTR: Q73MY3 HD domain protein~TIGRFAM: metal dependent phophohydrolase~PFAM: HD domain~TIGRFAM: uncharacterized domain HDIG gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1793 Arch_1794 Arch_1794 Arch_1794 1949739 1951094 - replicative DNA helicase COGs: COG0305 Replicative DNA helicase~InterProIPR003593:IPR007693:IPR007694:IPR007692:IPR 016136~KEGG: bcv:Bcav_4175 replicative DNA helicase~PFAM: DnaB domain protein helicase domain protein~SMART: AAA ATPase~SPTR: D0WL61 Replicative DNA helicase~TIGRFAM: replicative DNA helicase~PFAM: DnaB-like helicase N terminal domain%3B DnaB-like helicase C terminal domain~TIGRFAM: replicative DNA helicase gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1794 Arch_1795 Arch_1795 Arch_1795 1951781 1953115 + MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: bcv:Bcav_4176 MATE efflux family protein~PFAM: multi antimicrobial extrusion protein MatE~SPTR: D0WL60 MATE efflux family protein~TIGRFAM: MATE efflux family protein~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1795 Arch_1796 Arch_1796 Arch_1796 1953402 1956416 - Cna B domain protein COGs: COG4932 outer membrane protein~InterPro IPR008454~KEGG: soz:Spy49_0112 putative collagen binding protein~PFAM: Cna B domain protein~SPTR: B5XJF1 Putative collagen binding protein~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1796 Arch_1797 Arch_1797 Arch_1797 1956836 1958405 + pseudogene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1797 Arch_1798 Arch_1798 Arch_1798 1958542 1961916 - glycoside hydrolase family 85 COGs: COG4724 Endo-beta-N-acetylglucosaminidase D~InterPro IPR008957:IPR003961:IPR005201~KEGG: pac:PPA1805 endo-beta-N-acetylglucosaminidase family protein~PFAM: glycoside hydrolase family 85%3B Fibronectin type III domain protein~SPTR: Q6A6T2 Endo-beta-N-acetylglucosaminidase family protein~PFAM: Glycosyl hydrolase family 85~TIGRFAM: LPXTG-motif cell wall anchor domain gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1798 Arch_1799 Arch_1799 Arch_1799 1962177 1962623 - ribosomal protein L9 COGs: COG0359 Ribosomal protein L9~InterPro IPR020070:IPR020069:IPR009027:IPR020594~KEGG: bfa:Bfae_31750 LSU ribosomal protein L9P~PFAM: Ribosomal protein L9-like~SPTR: D0WL46 Ribosomal protein L9~TIGRFAM: ribosomal protein L9~PFAM: Ribosomal protein L9%2C N-terminal domain%3B Ribosomal protein L9%2C C-terminal domain~TIGRFAM: ribosomal protein L9 gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1799 Arch_1800 Arch_1800 Arch_1800 1962647 1962883 - ribosomal protein S18 COGs: COG0238 Ribosomal protein S18~InterPro IPR018275:IPR001648~KEGG: xce:Xcel_3353 ribosomal protein S18~PFAM: ribosomal protein S18~SPTR: D0WL45 Ribosomal protein S18~TIGRFAM: ribosomal protein S18~PFAM: Ribosomal protein S18~TIGRFAM: ribosomal protein S18 gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1800 Arch_1801 Arch_1801 Arch_1801 1962944 1963471 - single-strand binding protein COGs: COG0629 Single-stranded DNA-binding protein~InterPro IPR016027:IPR000424:IPR011344:IPR012340~KEGG: xce:Xcel_3354 single-strand binding protein~PFAM: single-strand binding protein/Primosomal replication protein n~SPTR: D0WL44 Single-strand binding protein~TIGRFAM: single-strand binding protein~PFAM: Single-strand binding protein family~TIGRFAM: single stranded DNA-binding protein (ssb) gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1801 Arch_1802 Arch_1802 Arch_1802 1963490 1963795 - ribosomal protein S6 COGs: COG0360 Ribosomal protein S6~InterPro IPR000529:IPR020814:IPR014717~KEGG: bfa:Bfae_31780 SSU ribosomal protein S6P~PFAM: Ribosomal protein S6%2C bacterial-like~SPTR: C0W4W9 Ribosomal protein S6~TIGRFAM: ribosomal protein S6~PFAM: Ribosomal protein S6~TIGRFAM: ribosomal protein S6 gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1802 Arch_1803 Arch_1803 Arch_1803 1963959 1966124 - Peptidoglycan glycosyltransferase COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein)~InterPro IPR012338:IPR001264:IPR001460~KEGG: bcv:Bcav_4182 glycosyl transferase family 51~PFAM: glycosyl transferase family 51%3B penicillin-binding protein transpeptidase~PRIAM: Peptidoglycan glycosyltransferase~SPTR: D0WL42 Penicillin-binding protein~manually curated~PFAM: Penicillin binding protein transpeptidase domain%3B Transglycosylase gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1803 Arch_1804 Arch_1804 Arch_1804 1966130 1967374 - protein of unknown function UPF0118 COGs: COG0628 permease~InterPro IPR002549~KEGG: nfa:nfa32820 hypothetical protein~PFAM: protein of unknown function UPF0118~SPTR: D0WL41 Putative uncharacterized protein~PFAM: Domain of unknown function DUF20 gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1804 Arch_1805 Arch_1805 Arch_1805 1967443 1968768 - major facilitator superfamily MFS_1 InterPro IPR016196:IPR011701~KEGG: bcv:Bcav_4203 major facilitator superfamily MFS_1~PFAM: major facilitator superfamily MFS_1~SPTR: C1RM73 Major Facilitator Superfamily transporter~PFAM: Major Facilitator Superfamily gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1805 Arch_1806 Arch_1806 Arch_1806 1968854 1970347 - polynucleotide adenylyltransferase/metal dependent phosphohydrolase COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase~InterProIPR003607:IPR002646:IPR006674:IPR014065:IPR 006675~KEGG: jde:Jden_2542 polynucleotide adenylyltransferase/metal dependent phosphohydrolase~PFAM: Polynucleotide adenylyltransferase region%3B metal-dependent phosphohydrolase HD sub domain~SMART: metal-dependent phosphohydrolase HD region~SPTR: D0WL39 tRNA adenylyltransferase~TIGRFAM: tRNA adenylyltransferase%3B metal dependent phophohydrolase~manually curated~PFAM: HD domain%3B Poly A polymerase head domain~TIGRFAM: tRNA adenylyltransferase%3B uncharacterized domain HDIG gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1806 Arch_1807 Arch_1807 Arch_1807 1970412 1970918 + NUDIX hydrolase COGs: COG1051 ADP-ribose pyrophosphatase~InterPro IPR020084:IPR015797:IPR020476:IPR000086~KEGG: bcv:Bcav_4208 NUDIX hydrolase~PFAM: NUDIX hydrolase~SPTR: D0WL38 MutT/NUDIX family protein~manually curated~PFAM: NUDIX domain gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1807 Arch_1808 Arch_1808 Arch_1808 1970918 1972909 + hypothetical protein KEGG: bcv:Bcav_4209 hypothetical protein~SPTR: D0WL37 Putative uncharacterized protein gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1808 Arch_1809 Arch_1809 Arch_1809 1972957 1974945 + hypothetical protein InterPro IPR011009~KEGG: xce:Xcel_3367 hypothetical protein~SPTR: D1BRV0 Putative uncharacterized protein gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1809 Arch_1810 Arch_1810 Arch_1810 1974992 1975939 + thioredoxin reductase COGs: COG0492 Thioredoxin reductase~InterPro IPR008255:IPR000103:IPR013027:IPR005982~KEGG: bfa:Bfae_31890 thioredoxin-disulfide reductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~SPTR: D0WL35 Thioredoxin-disulfide reductase~TIGRFAM: thioredoxin reductase~PFAM: Pyridine nucleotide-disulphide oxidoreductase~TIGRFAM: thioredoxin-disulfide reductase gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1810 Arch_1811 Arch_1811 Arch_1811 1975939 1976106 + hypothetical protein KEGG: csa:Csal_3245 ATP-dependent DNA helicase RecG gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1811 Arch_1812 Arch_1812 Arch_1812 1976292 1977650 + putative transcriptional regulator%2C GntR family COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs~InterPro IPR015424:IPR004839:IPR015421~KEGG: bcv:Bcav_4214 putative transcriptional regulator%2C GntR family~PFAM: aminotransferase class I and II~SPTR: D0WL32 Aminotransferase classes I and II protein~PFAM: Aminotransferase class I and II gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1812 Arch_1813 Arch_1813 Arch_1813 1977934 1979328 - parB-like partition protein COGs: COG1475 transcriptional regulator protein~InterPro IPR003115:IPR004437~KEGG: bcv:Bcav_4217 ParB-like partition protein~PFAM: ParB domain protein nuclease~SMART: ParB domain protein nuclease~SPTR: C5C6N1 ParB-like partition protein~TIGRFAM: parB-like partition protein~PFAM: ParB-like nuclease domain~TIGRFAM: ParB-like partition proteins gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1813 Arch_1814 Arch_1814 Arch_1814 1979339 1980292 - Cobyrinic acid ac-diamide synthase COGs: COG1192 ATPase involved in chromosome partitioning~InterPro IPR002586~KEGG: jde:Jden_2552 cobyrinic acid ac-diamide synthase~PFAM: Cobyrinic acid ac-diamide synthase~SPTR: C7R3N9 Cobyrinic acid ac-diamide synthase~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1814 Arch_1815 Arch_1815 Arch_1815 1980588 1981238 - methyltransferase GidB COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division~InterPro IPR005829:IPR003682~KEGG: bcv:Bcav_4220 methyltransferase GidB~PFAM: glucose inhibited division protein~SPTR: D0WL16 16S rRNA methyltransferase GidB~TIGRFAM: methyltransferase GidB~PFAM: rRNA small subunit methyltransferase G~TIGRFAM: 16S rRNA methyltransferase GidB gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1815 Arch_1816 Arch_1816 Arch_1816 1982017 1983216 + transposase IS116/IS110/IS902 family protein InterPro IPR002525:IPR003346~KEGG: mlu:Mlut_12160 transposase~PFAM: transposase IS116/IS110/IS902 family protein%3B transposase IS111A/IS1328/IS1533~SPTR: C0W956 Transposase%2C IS111A/IS1328/IS1533 (Fragment)~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1816 Arch_1817 Arch_1817 Arch_1817 1983323 1983880 - single-stranded nucleic acid binding R3H domain protein COGs: COG1847 RNA-binding protein~InterPro IPR001374~KEGG: bcv:Bcav_4221 single-stranded nucleic acid binding R3H domain protein~PFAM: single-stranded nucleic acid binding R3H domain protein~SMART: single-stranded nucleic acid binding R3H domain protein~SPTR: D0WL15 R3H domain-containing protein~PFAM: R3H domain gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1817 Arch_1818 Arch_1818 Arch_1818 1983921 1985054 - membrane protein insertase%2C YidC/Oxa1 family COGs: COG0706 Preprotein translocase subunit YidC~InterPro IPR001708:IPR020001~KEGG: bcv:Bcav_4222 60 kDa inner membrane insertion protein~PFAM: 60 kDa inner membrane insertion protein~SPTR: D0WL13 Preprotein translocase%2C YidC subunit~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family~PFAM: 60Kd inner membrane protein~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family%2C C-terminal domain gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1818 Arch_1819 Arch_1819 Arch_1819 1985069 1985401 - protein of unknown function DUF37 COGs: COG0759 conserved hypothetical protein~InterPro IPR010916:IPR002696~KEGG: nml:Namu_5413 protein of unknown function DUF37~PFAM: protein of unknown function DUF37~SPTR: C0W4T4 Putative uncharacterized protein~PFAM: Domain of unknown function DUF37~TIGRFAM: conserved hypothetical protein TIGR00278 gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1819 Arch_1820 Arch_1820 Arch_1820 1985398 1985760 - ribonuclease P protein component COGs: COG0594 RNase P protein component~InterPro IPR020568:IPR000100:IPR014721~KEGG: tcu:Tcur_4984 ribonuclease P protein component~PFAM: ribonuclease P protein~SPTR: D1A969 Ribonuclease P protein component~TIGRFAM: ribonuclease P protein component~PFAM: Ribonuclease P~TIGRFAM: ribonuclease P protein component%2C eubacterial gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1820 Arch_1821 Arch_1821 Arch_1821 1985761 1985901 - ribosomal protein L34 InterPro IPR000271~KEGG: nml:Namu_5415 ribosomal protein L34~PFAM: ribosomal protein L34~SPTR: C0W4T2 50S ribosomal protein L34~TIGRFAM: ribosomal protein L34~PFAM: Ribosomal protein L34~TIGRFAM: ribosomal protein L34%2C bacterial type gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_1821 Arch_R0001 Arch_R0001 Arch_R0001 10504 10577 + tRNA-Ile tRNA gene7 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0001 Arch_R0002 Arch_R0002 Arch_R0002 10740 10812 + tRNA-Ala tRNA gene9 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0002 Arch_R0003 Arch_R0003 Arch_R0003 139703 139789 + tRNA-Leu tRNA gene109 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0003 Arch_R0004 Arch_R0004 Arch_R0004 251327 251400 - tRNA-Asp tRNA gene212 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0004 Arch_R0005 Arch_R0005 Arch_R0005 251459 251534 - tRNA-Phe tRNA gene213 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0005 Arch_R0006 Arch_R0006 Arch_R0006 251569 251645 - tRNA-Asp tRNA gene214 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0006 Arch_R0007 Arch_R0007 Arch_R0007 251688 251760 - tRNA-Glu tRNA gene215 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0007 Arch_R0008 Arch_R0008 Arch_R0008 255805 255881 - tRNA-Lys tRNA gene220 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0008 Arch_R0009 Arch_R0009 Arch_R0009 410816 410888 - tRNA-Arg tRNA gene358 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0009 Arch_R0010 Arch_R0010 Arch_R0010 470020 470096 + tRNA-Met tRNA gene410 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0010 Arch_R0011 Arch_R0011 Arch_R0011 493741 495258 + 16S ribosomal RNA rRNA gene432 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0011 Arch_R0012 Arch_R0012 Arch_R0012 495500 498585 + 23S ribosomal RNA rRNA gene433 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0012 Arch_R0013 Arch_R0013 Arch_R0013 498669 498785 + 5S ribosomal RNA rRNA gene434 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0013 Arch_R0014 Arch_R0014 Arch_R0014 527626 527701 - tRNA-Lys tRNA gene458 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0014 Arch_R0015 Arch_R0015 Arch_R0015 527765 527837 - tRNA-Lys tRNA gene459 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0015 Arch_R0016 Arch_R0016 Arch_R0016 529904 529978 + tRNA-His tRNA gene462 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0016 Arch_R0017 Arch_R0017 Arch_R0017 530953 531025 - tRNA-Arg tRNA gene464 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0017 Arch_R0018 Arch_R0018 Arch_R0018 610847 610920 - tRNA-Gly tRNA gene545 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0018 Arch_R0019 Arch_R0019 Arch_R0019 618809 618879 - tRNA-Gly tRNA gene557 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0019 Arch_R0020 Arch_R0020 Arch_R0020 619021 619097 + tRNA-Pro tRNA gene558 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0020 Arch_R0021 Arch_R0021 Arch_R0021 799398 799471 + tRNA-Met tRNA gene721 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0021 Arch_R0022 Arch_R0022 Arch_R0022 802066 802137 + tRNA-Asn tRNA gene726 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0022 Arch_R0023 Arch_R0023 Arch_R0023 816891 816963 + tRNA-Val tRNA gene741 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0023 Arch_R0024 Arch_R0024 Arch_R0024 823174 823472 + RNA component of RNaseP Bacterial RNase P class A as predicted by Rfam (RF00010)%2C score 246.14 gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0024 Arch_R0025 Arch_R0025 Arch_R0025 911619 911690 - tRNA-Val tRNA gene827 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0025 Arch_R0026 Arch_R0026 Arch_R0026 911858 911933 + tRNA-Gly tRNA gene828 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0026 Arch_R0027 Arch_R0027 Arch_R0027 911962 912032 + tRNA-Cys tRNA gene829 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0027 Arch_R0028 Arch_R0028 Arch_R0028 912042 912113 + tRNA-Val tRNA gene830 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0028 Arch_R0029 Arch_R0029 Arch_R0029 912139 912211 + tRNA-Gly tRNA gene831 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0029 Arch_R0030 Arch_R0030 Arch_R0030 912278 912352 + tRNA-Val tRNA gene832 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0030 Arch_R0031 Arch_R0031 Arch_R0031 991309 991382 - tRNA-Pro tRNA gene902 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0031 Arch_R0032 Arch_R0032 Arch_R0032 1022699 1022780 - tRNA-Leu tRNA gene929 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0032 Arch_R0033 Arch_R0033 Arch_R0033 1039068 1039152 - tRNA-Leu tRNA gene948 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0033 Arch_R0034 Arch_R0034 Arch_R0034 1069722 1069838 - 5S ribosomal RNA rRNA gene982 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0034 Arch_R0035 Arch_R0035 Arch_R0035 1069922 1073007 - 23S ribosomal RNA rRNA gene983 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0035 Arch_R0036 Arch_R0036 Arch_R0036 1073249 1074767 - 16S ribosomal RNA rRNA gene984 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0036 Arch_R0037 Arch_R0037 Arch_R0037 1196279 1196354 - tRNA-Ala tRNA gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0037 Arch_R0038 Arch_R0038 Arch_R0038 1199421 1199496 - tRNA-Ala tRNA gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0038 Arch_R0039 Arch_R0039 Arch_R0039 1239009 1239084 - tRNA-Glu tRNA gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0039 Arch_R0040 Arch_R0040 Arch_R0040 1239151 1239226 - tRNA-Glu tRNA gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0040 Arch_R0041 Arch_R0041 Arch_R0041 1239249 1239323 - tRNA-Gln tRNA gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0041 Arch_R0042 Arch_R0042 Arch_R0042 1247280 1247361 - tRNA-Leu tRNA gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0042 Arch_R0043 Arch_R0043 Arch_R0043 1347706 1349328 - ABC transporter related protein COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR003439:IPR003593~KEGG: bfa:Bfae_25310 ATPase component of ABC transporters with duplicated ATPase domain~PFAM: ABC transporter related~SMART: AAA ATPase~SPTR: A7BBF3 Putative uncharacterized protein~manually curated~tmRNA as predicted by Rfam (RF00023)%2C score 152.86~PFAM: ABC transporter gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0043 Arch_R0044 Arch_R0044 Arch_R0044 1537263 1537338 - tRNA-Trp tRNA gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0044 Arch_R0045 Arch_R0045 Arch_R0045 1546628 1546704 - tRNA-Met tRNA gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0045 Arch_R0046 Arch_R0046 Arch_R0046 1546730 1546805 - tRNA-Thr tRNA gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0046 Arch_R0047 Arch_R0047 Arch_R0047 1546915 1546998 - tRNA-Tyr tRNA gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0047 Arch_R0048 Arch_R0048 Arch_R0048 1606543 1606659 - 5S ribosomal RNA rRNA gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0048 Arch_R0049 Arch_R0049 Arch_R0049 1606743 1609828 - 23S ribosomal RNA rRNA gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0049 Arch_R0050 Arch_R0050 Arch_R0050 1610071 1611587 - 16S ribosomal RNA rRNA gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0050 Arch_R0051 Arch_R0051 Arch_R0051 1653705 1653781 - tRNA-Leu tRNA gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0051 Arch_R0052 Arch_R0052 Arch_R0052 1666403 1666476 - tRNA-Gln tRNA gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0052 Arch_R0053 Arch_R0053 Arch_R0053 1749404 1749476 - tRNA-Arg tRNA gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0053 Arch_R0054 Arch_R0054 Arch_R0054 1776826 1776898 - tRNA-Thr tRNA gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0054 Arch_R0055 Arch_R0055 Arch_R0055 1786015 1786105 - SRP RNA%3B RNA component of signal recognition particle gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0055 Arch_R0056 Arch_R0056 Arch_R0056 1786230 1786314 + tRNA-Ser tRNA gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0056 Arch_R0057 Arch_R0057 Arch_R0057 1811083 1811199 - 5S ribosomal RNA rRNA gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0057 Arch_R0058 Arch_R0058 Arch_R0058 1811283 1814369 - 23S ribosomal RNA rRNA gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0058 Arch_R0059 Arch_R0059 Arch_R0059 1814612 1816130 - 16S ribosomal RNA rRNA gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0059 Arch_R0060 Arch_R0060 Arch_R0060 1837396 1837468 - tRNA-Thr tRNA gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0060 Arch_R0061 Arch_R0061 Arch_R0061 1868353 1868426 + tRNA-Pro tRNA gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0061 Arch_R0062 Arch_R0062 Arch_R0062 1887854 1887944 - tRNA-Ser tRNA gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0062 Arch_R0063 Arch_R0063 Arch_R0063 1901573 1901663 + tRNA-Ser tRNA gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0063 Arch_R0064 Arch_R0064 Arch_R0064 1901847 1901935 + tRNA-Ser tRNA gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0064 Arch_R0065 Arch_R0065 Arch_R0065 1925818 1925890 + tRNA-Arg tRNA gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=Arch_R0065