locus-tag class description JTE88_00005 PF00308 Bacterial dnaA protein JTE88_00005 PF08299 Bacterial dnaA protein helix-turn-helix JTE88_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JTE88_00010 PF02767 DNA polymerase III beta subunit, central domain JTE88_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JTE88_00015 PF02463 RecF/RecN/SMC N terminal domain JTE88_00025 PF00204 DNA gyrase B JTE88_00025 PF00986 DNA gyrase B subunit, carboxyl terminus JTE88_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_00025 PF01751 Toprim domain JTE88_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller JTE88_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A JTE88_00035 PF12089 Transmembrane domain of unknown function (DUF3566) JTE88_00060 PF02837 Glycosyl hydrolases family 2, sugar binding domain JTE88_00060 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JTE88_00060 PF16355 Domain of unknown function (DUF4982) JTE88_00060 PF00703 Glycosyl hydrolases family 2 JTE88_00060 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JTE88_00070 PF08361 MAATS-type transcriptional repressor, C-terminal region JTE88_00070 PF00440 Bacterial regulatory proteins, tetR family JTE88_00080 PF07373 CAMP factor (Cfa) JTE88_00085 PF02652 L-lactate permease JTE88_00090 PF02754 Cysteine-rich domain JTE88_00095 PF11870 Domain of unknown function (DUF3390) JTE88_00095 PF13183 4Fe-4S dicluster domain JTE88_00095 PF02589 LUD domain JTE88_00100 PF02589 LUD domain JTE88_00105 PF02872 5'-nucleotidase, C-terminal domain JTE88_00105 PF00149 Calcineurin-like phosphoesterase JTE88_00110 PF13088 BNR repeat-like domain JTE88_00110 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase JTE88_00110 PF00754 F5/8 type C domain JTE88_00115 PF02028 BCCT, betaine/carnitine/choline family transporter JTE88_00125 PF13519 von Willebrand factor type A domain JTE88_00140 PF00356 Bacterial regulatory proteins, lacI family JTE88_00145 PF00294 pfkB family carbohydrate kinase JTE88_00165 PF00107 Zinc-binding dehydrogenase JTE88_00165 PF08240 Alcohol dehydrogenase GroES-like domain JTE88_00170 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JTE88_00170 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JTE88_00175 PF00083 Sugar (and other) transporter JTE88_00185 PF01261 Xylose isomerase-like TIM barrel JTE88_00190 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JTE88_00190 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JTE88_00195 PF00923 Transaldolase/Fructose-6-phosphate aldolase JTE88_00205 PF00294 pfkB family carbohydrate kinase JTE88_00215 PF04962 KduI/IolB family JTE88_00220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JTE88_00220 PF00205 Thiamine pyrophosphate enzyme, central domain JTE88_00220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JTE88_00225 PF00171 Aldehyde dehydrogenase family JTE88_00235 PF00480 ROK family JTE88_00240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JTE88_00245 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_00250 PF12911 N-terminal TM domain of oligopeptide transport permease C JTE88_00250 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_00255 PF00005 ABC transporter JTE88_00255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JTE88_00260 PF00480 ROK family JTE88_00280 PF03009 Glycerophosphoryl diester phosphodiesterase family JTE88_00290 PF16363 GDP-mannose 4,6 dehydratase JTE88_00295 PF00005 ABC transporter JTE88_00300 PF01061 ABC-2 type transporter JTE88_00325 PF00534 Glycosyl transferases group 1 JTE88_00325 PF13439 Glycosyltransferase Family 4 JTE88_00330 PF04991 LicD family JTE88_00335 PF12804 MobA-like NTP transferase domain JTE88_00355 PF00886 Ribosomal protein S16 JTE88_00365 PF00877 NlpC/P60 family JTE88_00370 PF04321 RmlD substrate binding domain JTE88_00375 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JTE88_00385 PF00535 Glycosyl transferase family 2 JTE88_00390 PF00483 Nucleotidyl transferase JTE88_00400 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JTE88_00405 PF01694 Rhomboid family JTE88_00410 PF06781 Cell division protein CrgA JTE88_00415 PF04203 Sortase domain JTE88_00420 PF03793 PASTA domain JTE88_00420 PF00069 Protein kinase domain JTE88_00425 PF00905 Penicillin binding protein transpeptidase domain JTE88_00430 PF01098 Cell cycle protein JTE88_00440 PF16697 Inner membrane component of T3SS, cytoplasmic domain JTE88_00445 PF00498 FHA domain JTE88_00445 PF12401 Protein of unknown function (DUF2662) JTE88_00455 PF00746 LPXTG cell wall anchor motif JTE88_00455 PF16555 Gram-positive pilin subunit D1, N-terminal domain JTE88_00465 PF03458 UPF0126 domain JTE88_00470 PF01661 Macro domain JTE88_00475 PF00075 RNase H JTE88_00480 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JTE88_00480 PF00326 Prolyl oligopeptidase family JTE88_00485 PF01048 Phosphorylase superfamily JTE88_00490 PF02664 S-Ribosylhomocysteinase (LuxS) JTE88_00500 PF07972 NrdI Flavodoxin like JTE88_00505 PF08343 Ribonucleotide reductase N-terminal JTE88_00505 PF00317 Ribonucleotide reductase, all-alpha domain JTE88_00505 PF02867 Ribonucleotide reductase, barrel domain JTE88_00515 PF00268 Ribonucleotide reductase, small chain JTE88_00520 PF01451 Low molecular weight phosphotyrosine protein phosphatase JTE88_00540 PF00005 ABC transporter JTE88_00545 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_00550 PF00497 Bacterial extracellular solute-binding proteins, family 3 JTE88_00555 PF11898 Domain of unknown function (DUF3418) JTE88_00555 PF04408 Helicase associated domain (HA2) JTE88_00555 PF00271 Helicase conserved C-terminal domain JTE88_00555 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JTE88_00555 PF00270 DEAD/DEAH box helicase JTE88_00595 PF00392 Bacterial regulatory proteins, gntR family JTE88_00595 PF07702 UTRA domain JTE88_00600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JTE88_00600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JTE88_00600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JTE88_00600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JTE88_00620 PF00403 Heavy-metal-associated domain JTE88_00635 PF09335 SNARE associated Golgi protein JTE88_00640 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV JTE88_00655 PF01487 Type I 3-dehydroquinase JTE88_00660 PF00156 Phosphoribosyl transferase domain JTE88_00665 PF01297 Zinc-uptake complex component A periplasmic JTE88_00670 PF00005 ABC transporter JTE88_00675 PF00950 ABC 3 transport family JTE88_00680 PF00950 ABC 3 transport family JTE88_00685 PF01325 Iron dependent repressor, N-terminal DNA binding domain JTE88_00685 PF02742 Iron dependent repressor, metal binding and dimerisation domain JTE88_00685 PF18357 Diphteria toxin repressor SH3 domain JTE88_00690 PF00692 dUTPase JTE88_00695 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JTE88_00695 PF00361 Proton-conducting membrane transporter JTE88_00695 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JTE88_00695 PF13244 Domain of unknown function (DUF4040) JTE88_00705 PF00361 Proton-conducting membrane transporter JTE88_00715 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JTE88_00720 PF03334 Na+/H+ antiporter subunit JTE88_00735 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_00740 PF08402 TOBE domain JTE88_00740 PF00005 ABC transporter JTE88_00745 PF03173 Putative carbohydrate binding domain JTE88_00745 PF00728 Glycosyl hydrolase family 20, catalytic domain JTE88_00745 PF02838 Glycosyl hydrolase family 20, domain 2 JTE88_00745 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JTE88_00750 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_00755 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_00760 PF01547 Bacterial extracellular solute-binding protein JTE88_00770 PF07690 Major Facilitator Superfamily JTE88_00775 PF02388 FemAB family JTE88_00785 PF07883 Cupin domain JTE88_00790 PF00326 Prolyl oligopeptidase family JTE88_00790 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JTE88_00795 PF00012 Hsp70 protein JTE88_00800 PF01025 GrpE JTE88_00805 PF00684 DnaJ central domain JTE88_00805 PF01556 DnaJ C terminal domain JTE88_00805 PF00226 DnaJ domain JTE88_00810 PF13411 MerR HTH family regulatory protein JTE88_00815 PF00293 NUDIX domain JTE88_00835 PF04073 Aminoacyl-tRNA editing domain JTE88_00845 PF03073 TspO/MBR family JTE88_00850 PF00749 tRNA synthetases class I (E and Q), catalytic domain JTE88_00860 PF00004 ATPase family associated with various cellular activities (AAA) JTE88_00860 PF10431 C-terminal, D2-small domain, of ClpB protein JTE88_00860 PF17871 AAA lid domain JTE88_00860 PF02861 Clp amino terminal domain, pathogenicity island component JTE88_00860 PF07724 AAA domain (Cdc48 subfamily) JTE88_00865 PF00324 Amino acid permease JTE88_00870 PF13333 Integrase core domain JTE88_00870 PF13276 HTH-like domain JTE88_00870 PF00665 Integrase core domain JTE88_00875 PF13276 HTH-like domain JTE88_00875 PF00665 Integrase core domain JTE88_00895 PF13276 HTH-like domain JTE88_00895 PF00665 Integrase core domain JTE88_00900 PF13276 HTH-like domain JTE88_00900 PF13333 Integrase core domain JTE88_00900 PF00665 Integrase core domain JTE88_00915 PF01658 Myo-inositol-1-phosphate synthase JTE88_00925 PF03372 Endonuclease/Exonuclease/phosphatase family JTE88_00930 PF00106 short chain dehydrogenase JTE88_00940 PF00293 NUDIX domain JTE88_00955 PF13411 MerR HTH family regulatory protein JTE88_00955 PF00145 C-5 cytosine-specific DNA methylase JTE88_00975 PF01116 Fructose-bisphosphate aldolase class-II JTE88_00985 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JTE88_00985 PF02929 Beta galactosidase small chain JTE88_00985 PF02837 Glycosyl hydrolases family 2, sugar binding domain JTE88_00985 PF16353 Domain of unknown function(DUF4981) JTE88_01000 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_01005 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_01025 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain JTE88_01025 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain JTE88_01030 PF01259 SAICAR synthetase JTE88_01035 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JTE88_01035 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JTE88_01110 PF01641 SelR domain JTE88_01150 PF01384 Phosphate transporter family JTE88_01160 PF01235 Sodium:alanine symporter family JTE88_01170 PF08768 Domain of unknown function (DUF1794) JTE88_01180 PF02580 D-Tyr-tRNA(Tyr) deacylase JTE88_01185 PF07724 AAA domain (Cdc48 subfamily) JTE88_01185 PF00004 ATPase family associated with various cellular activities (AAA) JTE88_01185 PF10431 C-terminal, D2-small domain, of ClpB protein JTE88_01185 PF02861 Clp amino terminal domain, pathogenicity island component JTE88_01185 PF17871 AAA lid domain JTE88_01190 PF00291 Pyridoxal-phosphate dependent enzyme JTE88_01195 PF13726 Na+-H+ antiporter family JTE88_01195 PF03553 Na+/H+ antiporter family JTE88_01200 PF02896 PEP-utilising enzyme, TIM barrel domain JTE88_01200 PF00391 PEP-utilising enzyme, mobile domain JTE88_01200 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JTE88_01205 PF01757 Acyltransferase family JTE88_01225 PF00877 NlpC/P60 family JTE88_01230 PF00719 Inorganic pyrophosphatase JTE88_01235 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JTE88_01245 PF01171 PP-loop family JTE88_01245 PF09179 TilS substrate binding domain JTE88_01250 PF17862 AAA+ lid domain JTE88_01250 PF01434 Peptidase family M41 JTE88_01250 PF00004 ATPase family associated with various cellular activities (AAA) JTE88_01255 PF01227 GTP cyclohydrolase I JTE88_01260 PF00809 Pterin binding enzyme JTE88_01265 PF02152 Dihydroneopterin aldolase JTE88_01290 PF02569 Pantoate-beta-alanine ligase JTE88_01295 PF02261 Aspartate decarboxylase JTE88_01300 PF01336 OB-fold nucleic acid binding domain JTE88_01300 PF00152 tRNA synthetases class II (D, K and N) JTE88_01305 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase JTE88_01305 PF00754 F5/8 type C domain JTE88_01305 PF13088 BNR repeat-like domain JTE88_01310 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JTE88_01310 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JTE88_01315 PF00230 Major intrinsic protein JTE88_01325 PF13183 4Fe-4S dicluster domain JTE88_01325 PF02754 Cysteine-rich domain JTE88_01330 PF00890 FAD binding domain JTE88_01335 PF01266 FAD dependent oxidoreductase JTE88_01335 PF04324 BFD-like [2Fe-2S] binding domain JTE88_01340 PF13936 Helix-turn-helix domain JTE88_01340 PF04198 Putative sugar-binding domain JTE88_01345 PF00633 Helix-hairpin-helix motif JTE88_01345 PF10576 Iron-sulfur binding domain of endonuclease III JTE88_01345 PF00730 HhH-GPD superfamily base excision DNA repair protein JTE88_01355 PF07690 Major Facilitator Superfamily JTE88_01365 PF06745 KaiC JTE88_01365 PF18073 Rubredoxin metal binding domain JTE88_01370 PF02254 TrkA-N domain JTE88_01370 PF02080 TrkA-C domain JTE88_01375 PF02386 Cation transport protein JTE88_01380 PF12728 Helix-turn-helix domain JTE88_01395 PF00300 Histidine phosphatase superfamily (branch 1) JTE88_01405 PF01040 UbiA prenyltransferase family JTE88_01410 PF13193 AMP-binding enzyme C-terminal domain JTE88_01410 PF00501 AMP-binding enzyme JTE88_01415 PF00378 Enoyl-CoA hydratase/isomerase JTE88_01420 PF18374 Enolase N-terminal domain-like JTE88_01420 PF13378 Enolase C-terminal domain-like JTE88_01425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JTE88_01425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JTE88_01430 PF13180 PDZ domain JTE88_01435 PF00425 chorismate binding enzyme JTE88_01435 PF04715 Anthranilate synthase component I, N terminal region JTE88_01440 PF01209 ubiE/COQ5 methyltransferase family JTE88_01445 PF01494 FAD binding domain JTE88_01450 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JTE88_01455 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JTE88_01460 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JTE88_01465 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JTE88_01475 PF10531 SLBB domain JTE88_01475 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JTE88_01475 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JTE88_01480 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JTE88_01480 PF01568 Molydopterin dinucleotide binding domain JTE88_01480 PF00384 Molybdopterin oxidoreductase JTE88_01485 PF00146 NADH dehydrogenase JTE88_01490 PF12838 4Fe-4S dicluster domain JTE88_01495 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JTE88_01500 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JTE88_01505 PF00361 Proton-conducting membrane transporter JTE88_01505 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JTE88_01510 PF00361 Proton-conducting membrane transporter JTE88_01515 PF00361 Proton-conducting membrane transporter JTE88_01520 PF00348 Polyprenyl synthetase JTE88_01525 PF07516 SecA Wing and Scaffold domain JTE88_01525 PF01043 SecA preprotein cross-linking domain JTE88_01525 PF07517 SecA DEAD-like domain JTE88_01565 PF13476 AAA domain JTE88_01585 PF03193 RsgA GTPase JTE88_01590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JTE88_01600 PF00392 Bacterial regulatory proteins, gntR family JTE88_01600 PF07702 UTRA domain JTE88_01610 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase JTE88_01615 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JTE88_01620 PF01979 Amidohydrolase family JTE88_01625 PF08281 Sigma-70, region 4 JTE88_01625 PF04542 Sigma-70 region 2 JTE88_01630 PF13490 Putative zinc-finger JTE88_01680 PF01032 FecCD transport family JTE88_01685 PF00005 ABC transporter JTE88_01695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JTE88_01695 PF02779 Transketolase, pyrimidine binding domain JTE88_01695 PF16078 2-oxoglutarate dehydrogenase N-terminus JTE88_01695 PF00676 Dehydrogenase E1 component JTE88_01695 PF16870 2-oxoglutarate dehydrogenase C-terminal JTE88_01700 PF01595 Cyclin M transmembrane N-terminal domain JTE88_01700 PF00571 CBS domain JTE88_01700 PF03471 Transporter associated domain JTE88_01705 PF00571 CBS domain JTE88_01705 PF01595 Cyclin M transmembrane N-terminal domain JTE88_01710 PF08525 Opacity-associated protein A N-terminal motif JTE88_01710 PF01476 LysM domain JTE88_01710 PF01551 Peptidase family M23 JTE88_01715 PF03009 Glycerophosphoryl diester phosphodiesterase family JTE88_01725 PF00750 tRNA synthetases class I (R) JTE88_01725 PF03485 Arginyl tRNA synthetase N terminal domain JTE88_01725 PF05746 DALR anticodon binding domain JTE88_01735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JTE88_01735 PF07498 Rho termination factor, N-terminal domain JTE88_01735 PF07497 Rho termination factor, RNA-binding domain JTE88_01740 PF01197 Ribosomal protein L31 JTE88_01745 PF03462 PCRF domain JTE88_01745 PF00472 RF-1 domain JTE88_01750 PF17827 PrmC N-terminal domain JTE88_01755 PF01300 Telomere recombination JTE88_01760 PF00953 Glycosyl transferase family 4 JTE88_01770 PF00119 ATP synthase A chain JTE88_01775 PF00137 ATP synthase subunit C JTE88_01780 PF00430 ATP synthase B/B' CF(0) JTE88_01785 PF00213 ATP synthase delta (OSCP) subunit JTE88_01790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JTE88_01790 PF00306 ATP synthase alpha/beta chain, C terminal domain JTE88_01790 PF02874 ATP synthase alpha/beta family, beta-barrel domain JTE88_01795 PF00231 ATP synthase JTE88_01800 PF02874 ATP synthase alpha/beta family, beta-barrel domain JTE88_01800 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JTE88_01805 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JTE88_01805 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JTE88_01815 PF01939 Endonuclease NucS JTE88_01845 PF00085 Thioredoxin JTE88_01850 PF00356 Bacterial regulatory proteins, lacI family JTE88_01860 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_01860 PF14785 Maltose transport system permease protein MalF P2 domain JTE88_01865 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_01870 PF01055 Glycosyl hydrolases family 31 JTE88_01870 PF13802 Galactose mutarotase-like JTE88_01875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JTE88_01875 PF00128 Alpha amylase, catalytic domain JTE88_01875 PF02806 Alpha amylase, C-terminal all-beta domain JTE88_01880 PF18085 Maltokinase N-terminal cap domain JTE88_01880 PF01636 Phosphotransferase enzyme family JTE88_01885 PF00128 Alpha amylase, catalytic domain JTE88_01885 PF16657 Maltogenic Amylase, C-terminal domain JTE88_01890 PF00128 Alpha amylase, catalytic domain JTE88_01890 PF11896 Domain of unknown function (DUF3416) JTE88_01900 PF00343 Carbohydrate phosphorylase JTE88_01905 PF00579 tRNA synthetases class I (W and Y) JTE88_01910 PF02687 FtsX-like permease family JTE88_01910 PF00005 ABC transporter JTE88_01910 PF12704 MacB-like periplasmic core domain JTE88_01935 PF07859 alpha/beta hydrolase fold JTE88_01945 PF13276 HTH-like domain JTE88_01945 PF00665 Integrase core domain JTE88_01945 PF13333 Integrase core domain JTE88_01995 PF07690 Major Facilitator Superfamily JTE88_02005 PF05977 Transmembrane secretion effector JTE88_02010 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JTE88_02010 PF00128 Alpha amylase, catalytic domain JTE88_02015 PF09297 NADH pyrophosphatase zinc ribbon domain JTE88_02015 PF00293 NUDIX domain JTE88_02015 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain JTE88_02020 PF00580 UvrD/REP helicase N-terminal domain JTE88_02020 PF13361 UvrD-like helicase C-terminal domain JTE88_02020 PF00570 HRDC domain JTE88_02035 PF05362 Lon protease (S16) C-terminal proteolytic domain JTE88_02035 PF13180 PDZ domain JTE88_02045 PF03699 Uncharacterised protein family (UPF0182) JTE88_02055 PF00005 ABC transporter JTE88_02060 PF00392 Bacterial regulatory proteins, gntR family JTE88_02080 PF01022 Bacterial regulatory protein, arsR family JTE88_02105 PF00005 ABC transporter JTE88_02120 PF00186 Dihydrofolate reductase JTE88_02125 PF00303 Thymidylate synthase JTE88_02135 PF07568 Histidine kinase JTE88_02135 PF12282 Signal transduction histidine kinase JTE88_02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_02140 PF02467 Transcription factor WhiB JTE88_02150 PF00005 ABC transporter JTE88_02155 PF00072 Response regulator receiver domain JTE88_02155 PF00196 Bacterial regulatory proteins, luxR family JTE88_02165 PF00533 BRCA1 C Terminus (BRCT) domain JTE88_02165 PF12826 Helix-hairpin-helix motif JTE88_02165 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JTE88_02165 PF03120 NAD-dependent DNA ligase OB-fold domain JTE88_02165 PF01653 NAD-dependent DNA ligase adenylation domain JTE88_02170 PF13396 Phospholipase_D-nuclease N-terminal JTE88_02170 PF13091 PLD-like domain JTE88_02175 PF02686 Glu-tRNAGln amidotransferase C subunit JTE88_02180 PF01425 Amidase JTE88_02185 PF02637 GatB domain JTE88_02185 PF02934 GatB/GatE catalytic domain JTE88_02190 PF00390 Malic enzyme, N-terminal domain JTE88_02190 PF03949 Malic enzyme, NAD binding domain JTE88_02210 PF01209 ubiE/COQ5 methyltransferase family JTE88_02220 PF02080 TrkA-C domain JTE88_02220 PF06826 Predicted Permease Membrane Region JTE88_02225 PF10415 Fumarase C C-terminus JTE88_02225 PF00206 Lyase JTE88_02230 PF01063 Amino-transferase class IV JTE88_02235 PF01228 Glycine radical JTE88_02235 PF02901 Pyruvate formate lyase-like JTE88_02240 PF01228 Glycine radical JTE88_02240 PF02901 Pyruvate formate lyase-like JTE88_02245 PF04055 Radical SAM superfamily JTE88_02255 PF13411 MerR HTH family regulatory protein JTE88_02255 PF07739 TipAS antibiotic-recognition domain JTE88_02260 PF01168 Alanine racemase, N-terminal domain JTE88_02265 PF08148 DSHCT (NUC185) domain JTE88_02265 PF00270 DEAD/DEAH box helicase JTE88_02265 PF00271 Helicase conserved C-terminal domain JTE88_02275 PF00005 ABC transporter JTE88_02275 PF12704 MacB-like periplasmic core domain JTE88_02275 PF02687 FtsX-like permease family JTE88_02310 PF00929 Exonuclease JTE88_02325 PF00005 ABC transporter JTE88_02335 PF00005 ABC transporter JTE88_02335 PF12848 ABC transporter JTE88_02345 PF02446 4-alpha-glucanotransferase JTE88_02350 PF00367 phosphotransferase system, EIIB JTE88_02350 PF02378 Phosphotransferase system, EIIC JTE88_02355 PF00375 Sodium:dicarboxylate symporter family JTE88_02360 PF00296 Luciferase-like monooxygenase JTE88_02365 PF01226 Formate/nitrite transporter JTE88_02370 PF01433 Peptidase family M1 domain JTE88_02370 PF11838 ERAP1-like C-terminal domain JTE88_02385 PF01431 Peptidase family M13 JTE88_02385 PF05649 Peptidase family M13 JTE88_02390 PF02502 Ribose/Galactose Isomerase JTE88_02395 PF00132 Bacterial transferase hexapeptide (six repeats) JTE88_02400 PF00291 Pyridoxal-phosphate dependent enzyme JTE88_02405 PF01205 Uncharacterized protein family UPF0029 JTE88_02405 PF09186 Domain of unknown function (DUF1949) JTE88_02410 PF01783 Ribosomal L32p protein family JTE88_02425 PF00950 ABC 3 transport family JTE88_02430 PF00005 ABC transporter JTE88_02440 PF01297 Zinc-uptake complex component A periplasmic JTE88_02445 PF02554 Carbon starvation protein CstA JTE88_02445 PF13722 5TM C-terminal transporter carbon starvation CstA JTE88_02465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JTE88_02465 PF07992 Pyridine nucleotide-disulphide oxidoreductase JTE88_02475 PF01022 Bacterial regulatory protein, arsR family JTE88_02480 PF02028 BCCT, betaine/carnitine/choline family transporter JTE88_02485 PF00939 Sodium:sulfate symporter transmembrane region JTE88_02490 PF01712 Deoxynucleoside kinase JTE88_02495 PF00764 Arginosuccinate synthase JTE88_02500 PF00206 Lyase JTE88_02500 PF14698 Argininosuccinate lyase C-terminal JTE88_02510 PF07992 Pyridine nucleotide-disulphide oxidoreductase JTE88_02510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JTE88_02615 PF00072 Response regulator receiver domain JTE88_02615 PF00196 Bacterial regulatory proteins, luxR family JTE88_02625 PF00005 ABC transporter JTE88_02655 PF00253 Ribosomal protein S14p/S29e JTE88_02660 PF00444 Ribosomal protein L36 JTE88_02665 PF00830 Ribosomal L28 family JTE88_02670 PF00471 Ribosomal protein L33 JTE88_02690 PF05697 Bacterial trigger factor protein (TF) JTE88_02690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JTE88_02690 PF05698 Bacterial trigger factor protein (TF) C-terminus JTE88_02700 PF00574 Clp protease JTE88_02705 PF00574 Clp protease JTE88_02710 PF06689 ClpX C4-type zinc finger JTE88_02710 PF10431 C-terminal, D2-small domain, of ClpB protein JTE88_02710 PF07724 AAA domain (Cdc48 subfamily) JTE88_02715 PF00501 AMP-binding enzyme JTE88_02720 PF08264 Anticodon-binding domain of tRNA JTE88_02720 PF00133 tRNA synthetases class I (I, L, M and V) JTE88_02725 PF03807 NADP oxidoreductase coenzyme F420-dependent JTE88_02725 PF14748 Pyrroline-5-carboxylate reductase dimerisation JTE88_02735 PF00005 ABC transporter JTE88_02735 PF00664 ABC transporter transmembrane region JTE88_02740 PF00005 ABC transporter JTE88_02740 PF00664 ABC transporter transmembrane region JTE88_02745 PF00133 tRNA synthetases class I (I, L, M and V) JTE88_02745 PF08264 Anticodon-binding domain of tRNA JTE88_02750 PF08245 Mur ligase middle domain JTE88_02750 PF02875 Mur ligase family, glutamate ligase domain JTE88_02755 PF00334 Nucleoside diphosphate kinase JTE88_02760 PF02734 DAK2 domain JTE88_02765 PF02463 RecF/RecN/SMC N terminal domain JTE88_02765 PF06470 SMC proteins Flexible Hinge Domain JTE88_02775 PF02881 SRP54-type protein, helical bundle domain JTE88_02775 PF00448 SRP54-type protein, GTPase domain JTE88_02780 PF02881 SRP54-type protein, helical bundle domain JTE88_02780 PF00448 SRP54-type protein, GTPase domain JTE88_02780 PF02978 Signal peptide binding domain JTE88_02785 PF01979 Amidohydrolase family JTE88_02795 PF16916 Dimerisation domain of Zinc Transporter JTE88_02795 PF01545 Cation efflux family JTE88_02800 PF00886 Ribosomal protein S16 JTE88_02810 PF01782 RimM N-terminal domain JTE88_02815 PF01746 tRNA (Guanine-1)-methyltransferase JTE88_02820 PF01245 Ribosomal protein L19 JTE88_02825 PF10502 Signal peptidase, peptidase S26 JTE88_02830 PF01351 Ribonuclease HII JTE88_02835 PF10611 Protein of unknown function (DUF2469) JTE88_02840 PF02021 Uncharacterised protein family UPF0102 JTE88_02845 PF13335 Magnesium chelatase, subunit ChlI C-terminal JTE88_02845 PF01078 Magnesium chelatase, subunit ChlI JTE88_02850 PF17782 DprA winged helix domain JTE88_02850 PF02481 DNA recombination-mediator protein A JTE88_02855 PF00589 Phage integrase family JTE88_02855 PF02899 Phage integrase, N-terminal SAM-like domain JTE88_02860 PF01551 Peptidase family M23 JTE88_02865 PF00318 Ribosomal protein S2 JTE88_02870 PF00889 Elongation factor TS JTE88_02880 PF01012 Electron transfer flavoprotein domain JTE88_02880 PF00766 Electron transfer flavoprotein FAD-binding domain JTE88_02885 PF01494 FAD binding domain JTE88_02900 PF07690 Major Facilitator Superfamily JTE88_02910 PF00696 Amino acid kinase family JTE88_02915 PF01765 Ribosome recycling factor JTE88_02925 PF04055 Radical SAM superfamily JTE88_02935 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JTE88_02935 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JTE88_02935 PF13288 DXP reductoisomerase C-terminal domain JTE88_02940 PF02163 Peptidase family M50 JTE88_02940 PF17820 PDZ domain JTE88_02945 PF04551 GcpE protein JTE88_02955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JTE88_02955 PF04073 Aminoacyl-tRNA editing domain JTE88_02955 PF03129 Anticodon binding domain JTE88_02965 PF02576 RimP N-terminal domain JTE88_02965 PF17384 RimP C-terminal SH3 domain JTE88_02970 PF08529 NusA N-terminal domain JTE88_02970 PF13184 NusA-like KH domain JTE88_02980 PF00009 Elongation factor Tu GTP binding domain JTE88_02980 PF04760 Translation initiation factor IF-2, N-terminal region JTE88_02980 PF11987 Translation-initiation factor 2 JTE88_02985 PF02033 Ribosome-binding factor A JTE88_02990 PF09142 tRNA Pseudouridine synthase II, C terminal JTE88_02990 PF16198 tRNA pseudouridylate synthase B C-terminal domain JTE88_02990 PF01509 TruB family pseudouridylate synthase (N terminal domain) JTE88_02995 PF00154 recA bacterial DNA recombination protein JTE88_03025 PF12704 MacB-like periplasmic core domain JTE88_03025 PF02687 FtsX-like permease family JTE88_03025 PF00005 ABC transporter JTE88_03030 PF02687 FtsX-like permease family JTE88_03030 PF00005 ABC transporter JTE88_03030 PF12704 MacB-like periplasmic core domain JTE88_03040 PF01687 Riboflavin kinase JTE88_03040 PF06574 FAD synthetase JTE88_03050 PF00312 Ribosomal protein S15 JTE88_03055 PF00575 S1 RNA binding domain JTE88_03055 PF01138 3' exoribonuclease family, domain 1 JTE88_03055 PF00013 KH domain JTE88_03055 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JTE88_03065 PF00675 Insulinase (Peptidase family M16) JTE88_03065 PF05193 Peptidase M16 inactive domain JTE88_03075 PF17770 Ribonuclease J C-terminal domain JTE88_03075 PF12706 Beta-lactamase superfamily domain JTE88_03075 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JTE88_03080 PF08402 TOBE domain JTE88_03080 PF00005 ABC transporter JTE88_03085 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_03095 PF00005 ABC transporter JTE88_03100 PF01497 Periplasmic binding protein JTE88_03105 PF01032 FecCD transport family JTE88_03120 PF00005 ABC transporter JTE88_03120 PF00664 ABC transporter transmembrane region JTE88_03125 PF00664 ABC transporter transmembrane region JTE88_03125 PF00005 ABC transporter JTE88_03150 PF00486 Transcriptional regulatory protein, C terminal JTE88_03150 PF00072 Response regulator receiver domain JTE88_03155 PF16736 Single Cache-like JTE88_03155 PF00512 His Kinase A (phospho-acceptor) domain JTE88_03155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_03155 PF00989 PAS fold JTE88_03160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JTE88_03165 PF01580 FtsK/SpoIIIE family JTE88_03165 PF09397 Ftsk gamma domain JTE88_03165 PF17854 FtsK alpha domain JTE88_03170 PF01066 CDP-alcohol phosphatidyltransferase JTE88_03175 PF02464 Competence-damaged protein JTE88_03175 PF00994 Probable molybdopterin binding domain JTE88_03175 PF18146 Damage-inducible protein CinA KH domain JTE88_03190 PF00154 recA bacterial DNA recombination protein JTE88_03200 PF04055 Radical SAM superfamily JTE88_03200 PF01938 TRAM domain JTE88_03200 PF00919 Uncharacterized protein family UPF0004 JTE88_03210 PF05175 Methyltransferase small domain JTE88_03215 PF01926 50S ribosome-binding GTPase JTE88_03215 PF16360 GTP-binding GTPase Middle Region JTE88_03215 PF13167 GTP-binding GTPase N-terminal JTE88_03220 PF13307 Helicase C-terminal domain JTE88_03225 PF01726 LexA DNA binding domain JTE88_03225 PF00717 Peptidase S24-like JTE88_03235 PF03477 ATP cone domain JTE88_03240 PF00501 AMP-binding enzyme JTE88_03240 PF13193 AMP-binding enzyme C-terminal domain JTE88_03260 PF00817 impB/mucB/samB family JTE88_03260 PF11799 impB/mucB/samB family C-terminal domain JTE88_03270 PF02381 MraZ protein, putative antitoxin-like JTE88_03275 PF01795 MraW methylase family JTE88_03285 PF00905 Penicillin binding protein transpeptidase domain JTE88_03285 PF03717 Penicillin-binding Protein dimerisation domain JTE88_03290 PF01225 Mur ligase family, catalytic domain JTE88_03290 PF02875 Mur ligase family, glutamate ligase domain JTE88_03290 PF08245 Mur ligase middle domain JTE88_03295 PF08245 Mur ligase middle domain JTE88_03295 PF02875 Mur ligase family, glutamate ligase domain JTE88_03295 PF01225 Mur ligase family, catalytic domain JTE88_03300 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JTE88_03300 PF00953 Glycosyl transferase family 4 JTE88_03305 PF02875 Mur ligase family, glutamate ligase domain JTE88_03305 PF08245 Mur ligase middle domain JTE88_03310 PF01098 Cell cycle protein JTE88_03315 PF03033 Glycosyltransferase family 28 N-terminal domain JTE88_03315 PF04101 Glycosyltransferase family 28 C-terminal domain JTE88_03320 PF01225 Mur ligase family, catalytic domain JTE88_03320 PF02875 Mur ligase family, glutamate ligase domain JTE88_03320 PF08245 Mur ligase middle domain JTE88_03325 PF03799 Cell division protein FtsQ JTE88_03325 PF08478 POTRA domain, FtsQ-type JTE88_03330 PF00091 Tubulin/FtsZ family, GTPase domain JTE88_03330 PF12327 FtsZ family, C-terminal domain JTE88_03335 PF02578 Multi-copper polyphenol oxidoreductase laccase JTE88_03340 PF04472 Cell division protein SepF JTE88_03355 PF01252 Signal peptidase (SPase) II JTE88_03360 PF00849 RNA pseudouridylate synthase JTE88_03365 PF13673 Acetyltransferase (GNAT) domain JTE88_03370 PF02811 PHP domain JTE88_03370 PF07733 Bacterial DNA polymerase III alpha NTPase domain JTE88_03370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JTE88_03370 PF14579 Helix-hairpin-helix motif JTE88_03385 PF01475 Ferric uptake regulator family JTE88_03390 PF00950 ABC 3 transport family JTE88_03395 PF00005 ABC transporter JTE88_03400 PF01297 Zinc-uptake complex component A periplasmic JTE88_03400 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment JTE88_03405 PF03129 Anticodon binding domain JTE88_03405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JTE88_03415 PF01207 Dihydrouridine synthase (Dus) JTE88_03420 PF01966 HD domain JTE88_03420 PF13286 Phosphohydrolase-associated domain JTE88_03425 PF18610 Periplasmic binding protein domain JTE88_03425 PF13407 Periplasmic binding protein domain JTE88_03430 PF00005 ABC transporter JTE88_03435 PF02653 Branched-chain amino acid transport system / permease component JTE88_03445 PF10410 DnaB-helicase binding domain of primase JTE88_03445 PF08278 DNA primase DnaG DnaB-binding JTE88_03445 PF13662 Toprim domain JTE88_03445 PF01807 CHC2 zinc finger JTE88_03445 PF08275 DNA primase catalytic core, N-terminal domain JTE88_03520 PF02838 Glycosyl hydrolase family 20, domain 2 JTE88_03520 PF00728 Glycosyl hydrolase family 20, catalytic domain JTE88_03520 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JTE88_03520 PF03173 Putative carbohydrate binding domain JTE88_03540 PF01066 CDP-alcohol phosphatidyltransferase JTE88_03545 PF01370 NAD dependent epimerase/dehydratase family JTE88_03545 PF08338 Domain of unknown function (DUF1731) JTE88_03565 PF01300 Telomere recombination JTE88_03570 PF13419 Haloacid dehalogenase-like hydrolase JTE88_03575 PF00005 ABC transporter JTE88_03575 PF00664 ABC transporter transmembrane region JTE88_03580 PF00664 ABC transporter transmembrane region JTE88_03580 PF00005 ABC transporter JTE88_03585 PF17831 Pyruvate dehydrogenase E1 component middle domain JTE88_03585 PF00456 Transketolase, thiamine diphosphate binding domain JTE88_03615 PF00664 ABC transporter transmembrane region JTE88_03615 PF00005 ABC transporter JTE88_03630 PF00005 ABC transporter JTE88_03685 PF04264 YceI-like domain JTE88_03695 PF01784 NIF3 (NGG1p interacting factor 3) JTE88_03705 PF03883 Peroxide stress protein YaaA JTE88_03715 PF00480 ROK family JTE88_03720 PF00557 Metallopeptidase family M24 JTE88_03725 PF02548 Ketopantoate hydroxymethyltransferase JTE88_03730 PF00120 Glutamine synthetase, catalytic domain JTE88_03730 PF03951 Glutamine synthetase, beta-Grasp domain JTE88_03735 PF08335 GlnD PII-uridylyltransferase JTE88_03735 PF03710 Glutamate-ammonia ligase adenylyltransferase JTE88_03745 PF03951 Glutamine synthetase, beta-Grasp domain JTE88_03745 PF00120 Glutamine synthetase, catalytic domain JTE88_03750 PF13829 Domain of unknown function (DUF4191) JTE88_03760 PF00364 Biotin-requiring enzyme JTE88_03760 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JTE88_03760 PF02817 e3 binding domain JTE88_03765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JTE88_03765 PF07992 Pyridine nucleotide-disulphide oxidoreductase JTE88_03775 PF01048 Phosphorylase superfamily JTE88_03780 PF02789 Cytosol aminopeptidase family, N-terminal domain JTE88_03780 PF00883 Cytosol aminopeptidase family, catalytic domain JTE88_03790 PF07687 Peptidase dimerisation domain JTE88_03790 PF01546 Peptidase family M20/M25/M40 JTE88_03800 PF01521 Iron-sulphur cluster biosynthesis JTE88_03810 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JTE88_03810 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JTE88_03820 PF00929 Exonuclease JTE88_03820 PF01541 GIY-YIG catalytic domain JTE88_03830 PF00365 Phosphofructokinase JTE88_03835 PF01474 Class-II DAHP synthetase family JTE88_03840 PF00069 Protein kinase domain JTE88_03840 PF03793 PASTA domain JTE88_03845 PF05257 CHAP domain JTE88_03845 PF01476 LysM domain JTE88_03855 PF00348 Polyprenyl synthetase JTE88_03865 PF04545 Sigma-70, region 4 JTE88_03865 PF04539 Sigma-70 region 3 JTE88_03865 PF00140 Sigma-70 factor, region 1.2 JTE88_03865 PF04542 Sigma-70 region 2 JTE88_03870 PF00929 Exonuclease JTE88_03880 PF01751 Toprim domain JTE88_03880 PF00204 DNA gyrase B JTE88_03880 PF00986 DNA gyrase B subunit, carboxyl terminus JTE88_03880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_03895 PF00521 DNA gyrase/topoisomerase IV, subunit A JTE88_03895 PF03989 DNA gyrase C-terminal domain, beta-propeller JTE88_03910 PF00265 Thymidine kinase JTE88_03915 PF11268 Protein of unknown function (DUF3071) JTE88_03940 PF02254 TrkA-N domain JTE88_03940 PF02080 TrkA-C domain JTE88_03945 PF02254 TrkA-N domain JTE88_03945 PF02080 TrkA-C domain JTE88_03955 PF05958 tRNA (Uracil-5-)-methyltransferase JTE88_03960 PF00106 short chain dehydrogenase JTE88_03965 PF00731 AIR carboxylase JTE88_03970 PF01259 SAICAR synthetase JTE88_03975 PF00156 Phosphoribosyl transferase domain JTE88_03975 PF13537 Glutamine amidotransferase domain JTE88_03980 PF00586 AIR synthase related protein, N-terminal domain JTE88_03980 PF02769 AIR synthase related protein, C-terminal domain JTE88_03985 PF00551 Formyl transferase JTE88_03995 PF01808 AICARFT/IMPCHase bienzyme JTE88_03995 PF02142 MGS-like domain JTE88_04000 PF02844 Phosphoribosylglycinamide synthetase, N domain JTE88_04000 PF02843 Phosphoribosylglycinamide synthetase, C domain JTE88_04000 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JTE88_04010 PF01268 Formate--tetrahydrofolate ligase JTE88_04015 PF00330 Aconitase family (aconitate hydratase) JTE88_04015 PF00694 Aconitase C-terminal domain JTE88_04020 PF02780 Transketolase, C-terminal domain JTE88_04020 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JTE88_04020 PF02779 Transketolase, pyrimidine binding domain JTE88_04035 PF11941 Domain of unknown function (DUF3459) JTE88_04035 PF00128 Alpha amylase, catalytic domain JTE88_04040 PF00128 Alpha amylase, catalytic domain JTE88_04045 PF00128 Alpha amylase, catalytic domain JTE88_04045 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JTE88_04085 PF03313 Serine dehydratase alpha chain JTE88_04085 PF03315 Serine dehydratase beta chain JTE88_04090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JTE88_04090 PF03129 Anticodon binding domain JTE88_04090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JTE88_04095 PF01066 CDP-alcohol phosphatidyltransferase JTE88_04105 PF13439 Glycosyltransferase Family 4 JTE88_04120 PF00293 NUDIX domain JTE88_04125 PF01709 Transcriptional regulator JTE88_04130 PF02075 Crossover junction endodeoxyribonuclease RuvC JTE88_04135 PF01330 RuvA N terminal domain JTE88_04135 PF07499 RuvA, C-terminal domain JTE88_04140 PF17864 RuvB AAA lid domain JTE88_04140 PF05491 RuvB C-terminal winged helix domain JTE88_04140 PF05496 Holliday junction DNA helicase RuvB P-loop domain JTE88_04150 PF07549 SecD/SecF GG Motif JTE88_04150 PF02355 Protein export membrane protein JTE88_04155 PF07549 SecD/SecF GG Motif JTE88_04155 PF02355 Protein export membrane protein JTE88_04160 PF00156 Phosphoribosyl transferase domain JTE88_04165 PF13291 ACT domain JTE88_04165 PF04607 Region found in RelA / SpoT proteins JTE88_04165 PF02824 TGS domain JTE88_04175 PF03993 Domain of Unknown Function (DUF349) JTE88_04180 PF00753 Metallo-beta-lactamase superfamily JTE88_04185 PF03129 Anticodon binding domain JTE88_04185 PF13393 Histidyl-tRNA synthetase JTE88_04195 PF07650 KH domain JTE88_04195 PF01926 50S ribosome-binding GTPase JTE88_04200 PF00271 Helicase conserved C-terminal domain JTE88_04200 PF03880 DbpA RNA binding domain JTE88_04200 PF00270 DEAD/DEAH box helicase JTE88_04205 PF07690 Major Facilitator Superfamily JTE88_04210 PF01336 OB-fold nucleic acid binding domain JTE88_04210 PF02938 GAD domain JTE88_04210 PF00152 tRNA synthetases class II (D, K and N) JTE88_04215 PF17964 Bacterial Ig domain JTE88_04215 PF03734 L,D-transpeptidase catalytic domain JTE88_04225 PF03176 MMPL family JTE88_04230 PF12002 MgsA AAA+ ATPase C terminal JTE88_04230 PF00004 ATPase family associated with various cellular activities (AAA) JTE88_04230 PF16193 AAA C-terminal domain JTE88_04235 PF00163 Ribosomal protein S4/S9 N-terminal domain JTE88_04235 PF01479 S4 domain JTE88_04240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JTE88_04240 PF02272 DHHA1 domain JTE88_04240 PF01411 tRNA synthetases class II (A) JTE88_04245 PF03652 Holliday junction resolvase JTE88_04265 PF01264 Chorismate synthase JTE88_04270 PF01761 3-dehydroquinate synthase JTE88_04270 PF01202 Shikimate kinase JTE88_04280 PF01132 Elongation factor P (EF-P) OB domain JTE88_04280 PF08207 Elongation factor P (EF-P) KOW-like domain JTE88_04280 PF09285 Elongation factor P, C-terminal JTE88_04285 PF01029 NusB family JTE88_04290 PF00625 Guanylate kinase JTE88_04295 PF01192 RNA polymerase Rpb6 JTE88_04300 PF02441 Flavoprotein JTE88_04300 PF04127 DNA / pantothenate metabolism flavoprotein JTE88_04305 PF00438 S-adenosylmethionine synthetase, N-terminal domain JTE88_04305 PF02772 S-adenosylmethionine synthetase, central domain JTE88_04305 PF02773 S-adenosylmethionine synthetase, C-terminal domain JTE88_04310 PF17764 3′ DNA-binding domain (3′BD) JTE88_04315 PF00551 Formyl transferase JTE88_04315 PF02911 Formyl transferase, C-terminal domain JTE88_04320 PF01189 16S rRNA methyltransferase RsmB/F JTE88_04320 PF01029 NusB family JTE88_04325 PF00834 Ribulose-phosphate 3 epimerase family JTE88_04330 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_04335 PF09084 NMT1/THI5 like JTE88_04355 PF00270 DEAD/DEAH box helicase JTE88_04355 PF00271 Helicase conserved C-terminal domain JTE88_04355 PF08148 DSHCT (NUC185) domain JTE88_04360 PF00795 Carbon-nitrogen hydrolase JTE88_04360 PF00535 Glycosyl transferase family 2 JTE88_04365 PF13397 RNA polymerase-binding protein JTE88_04370 PF13411 MerR HTH family regulatory protein JTE88_04380 PF16697 Inner membrane component of T3SS, cytoplasmic domain JTE88_04385 PF01433 Peptidase family M1 domain JTE88_04385 PF11838 ERAP1-like C-terminal domain JTE88_04400 PF01926 50S ribosome-binding GTPase JTE88_04400 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JTE88_04405 PF02224 Cytidylate kinase JTE88_04410 PF00849 RNA pseudouridylate synthase JTE88_04410 PF01479 S4 domain JTE88_04415 PF04079 Segregation and condensation complex subunit ScpB JTE88_04420 PF02616 Segregation and condensation protein ScpA JTE88_04425 PF13614 AAA domain JTE88_04430 PF00589 Phage integrase family JTE88_04430 PF02899 Phage integrase, N-terminal SAM-like domain JTE88_04435 PF00456 Transketolase, thiamine diphosphate binding domain JTE88_04435 PF02779 Transketolase, pyrimidine binding domain JTE88_04435 PF02780 Transketolase, C-terminal domain JTE88_04440 PF03840 Preprotein translocase SecG subunit JTE88_04445 PF00121 Triosephosphate isomerase JTE88_04450 PF00162 Phosphoglycerate kinase JTE88_04455 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JTE88_04455 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JTE88_04460 PF14527 WhiA LAGLIDADG-like domain JTE88_04460 PF02650 WhiA C-terminal HTH domain JTE88_04460 PF10298 WhiA N-terminal LAGLIDADG-like domain JTE88_04465 PF01933 Uncharacterised protein family UPF0052 JTE88_04470 PF03668 P-loop ATPase protein family JTE88_04475 PF02151 UvrB/uvrC motif JTE88_04475 PF01541 GIY-YIG catalytic domain JTE88_04475 PF08459 UvrC Helix-hairpin-helix N-terminal JTE88_04480 PF17760 UvrA interaction domain JTE88_04480 PF17755 UvrA DNA-binding domain JTE88_04480 PF00005 ABC transporter JTE88_04490 PF13593 SBF-like CPA transporter family (DUF4137) JTE88_04505 PF02687 FtsX-like permease family JTE88_04505 PF00005 ABC transporter JTE88_04505 PF12704 MacB-like periplasmic core domain JTE88_04510 PF00005 ABC transporter JTE88_04510 PF16326 ABC transporter C-terminal domain JTE88_04510 PF12848 ABC transporter JTE88_04520 PF03741 Integral membrane protein TerC family JTE88_04525 PF02151 UvrB/uvrC motif JTE88_04525 PF12344 Ultra-violet resistance protein B JTE88_04525 PF17757 UvrB interaction domain JTE88_04525 PF04851 Type III restriction enzyme, res subunit JTE88_04525 PF00271 Helicase conserved C-terminal domain JTE88_04530 PF07690 Major Facilitator Superfamily JTE88_04535 PF01121 Dephospho-CoA kinase JTE88_04535 PF04229 GrpB protein JTE88_04545 PF00005 ABC transporter JTE88_04545 PF02687 FtsX-like permease family JTE88_04545 PF12704 MacB-like periplasmic core domain JTE88_04565 PF00575 S1 RNA binding domain JTE88_04570 PF08241 Methyltransferase domain JTE88_04570 PF12697 Alpha/beta hydrolase family JTE88_04575 PF00476 DNA polymerase family A JTE88_04575 PF01367 5'-3' exonuclease, C-terminal SAM fold JTE88_04575 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JTE88_04585 PF00072 Response regulator receiver domain JTE88_04585 PF03861 ANTAR domain JTE88_04595 PF02887 Pyruvate kinase, alpha/beta domain JTE88_04595 PF00224 Pyruvate kinase, barrel domain JTE88_04600 PF01790 Prolipoprotein diacylglyceryl transferase JTE88_04610 PF03136 Pup-ligase protein JTE88_04615 PF05639 Pup-like protein JTE88_04620 PF03136 Pup-ligase protein JTE88_04625 PF00004 ATPase family associated with various cellular activities (AAA) JTE88_04625 PF17758 Proteasomal ATPase OB N-terminal domain JTE88_04625 PF16450 Proteasomal ATPase OB C-terminal domain JTE88_04630 PF08704 tRNA methyltransferase complex GCD14 subunit JTE88_04635 PF12705 PD-(D/E)XK nuclease superfamily JTE88_04640 PF13419 Haloacid dehalogenase-like hydrolase JTE88_04645 PF02673 Bacitracin resistance protein BacA JTE88_04650 PF00248 Aldo/keto reductase family JTE88_04660 PF08501 Shikimate dehydrogenase substrate binding domain JTE88_04660 PF01488 Shikimate / quinate 5-dehydrogenase JTE88_04660 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JTE88_04685 PF02811 PHP domain JTE88_04685 PF14579 Helix-hairpin-helix motif JTE88_04685 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JTE88_04685 PF07733 Bacterial DNA polymerase III alpha NTPase domain JTE88_04700 PF00588 SpoU rRNA Methylase family JTE88_04710 PF00588 SpoU rRNA Methylase family JTE88_04715 PF01145 SPFH domain / Band 7 family JTE88_04725 PF00005 ABC transporter JTE88_04730 PF13439 Glycosyltransferase Family 4 JTE88_04730 PF00534 Glycosyl transferases group 1 JTE88_04735 PF00483 Nucleotidyl transferase JTE88_04745 PF00005 ABC transporter JTE88_04745 PF12848 ABC transporter JTE88_04750 PF04228 Putative neutral zinc metallopeptidase JTE88_04755 PF01883 Iron-sulfur cluster assembly protein JTE88_04760 PF01592 NifU-like N terminal domain JTE88_04765 PF00266 Aminotransferase class-V JTE88_04770 PF00005 ABC transporter JTE88_04775 PF00355 Rieske [2Fe-2S] domain JTE88_04780 PF01458 Uncharacterized protein family (UPF0051) JTE88_04785 PF01458 Uncharacterized protein family (UPF0051) JTE88_04795 PF00293 NUDIX domain JTE88_04810 PF11382 Copper transport outer membrane protein, MctB JTE88_04820 PF02463 RecF/RecN/SMC N terminal domain JTE88_04825 PF01513 ATP-NAD kinase JTE88_04830 PF01479 S4 domain JTE88_04830 PF01728 FtsJ-like methyltransferase JTE88_04840 PF18407 GCN5-related N-acetyltransferase like domain JTE88_04840 PF13344 Haloacid dehalogenase-like hydrolase JTE88_04865 PF06736 Protein of unknown function (DUF1211) JTE88_04900 PF00579 tRNA synthetases class I (W and Y) JTE88_04910 PF00881 Nitroreductase family JTE88_04915 PF01316 Arginine repressor, DNA binding domain JTE88_04915 PF02863 Arginine repressor, C-terminal domain JTE88_04920 PF00202 Aminotransferase class-III JTE88_04925 PF00106 short chain dehydrogenase JTE88_04930 PF03483 B3/4 domain JTE88_04930 PF03147 Ferredoxin-fold anticodon binding domain JTE88_04930 PF03484 tRNA synthetase B5 domain JTE88_04930 PF01588 Putative tRNA binding domain JTE88_04930 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JTE88_04935 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JTE88_04935 PF01409 tRNA synthetases class II core domain (F) JTE88_04945 PF00701 Dihydrodipicolinate synthetase family JTE88_04950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JTE88_04950 PF00005 ABC transporter JTE88_04955 PF00005 ABC transporter JTE88_04955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JTE88_04960 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_04965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JTE88_04970 PF00588 SpoU rRNA Methylase family JTE88_04970 PF08032 RNA 2'-O ribose methyltransferase substrate binding JTE88_04975 PF00453 Ribosomal protein L20 JTE88_04980 PF01632 Ribosomal protein L35 JTE88_04985 PF05198 Translation initiation factor IF-3, N-terminal domain JTE88_04985 PF00707 Translation initiation factor IF-3, C-terminal domain JTE88_05005 PF01255 Putative undecaprenyl diphosphate synthase JTE88_05010 PF02565 Recombination protein O C terminal JTE88_05010 PF11967 Recombination protein O N terminal JTE88_05015 PF01926 50S ribosome-binding GTPase JTE88_05015 PF07650 KH domain JTE88_05020 PF00571 CBS domain JTE88_05020 PF03471 Transporter associated domain JTE88_05020 PF01595 Cyclin M transmembrane N-terminal domain JTE88_05025 PF02130 Uncharacterized protein family UPF0054 JTE88_05030 PF02562 PhoH-like protein JTE88_05040 PF00226 DnaJ domain JTE88_05040 PF01556 DnaJ C terminal domain JTE88_05040 PF00684 DnaJ central domain JTE88_05045 PF01628 HrcA protein C terminal domain JTE88_05045 PF08220 DeoR-like helix-turn-helix domain JTE88_05065 PF00128 Alpha amylase, catalytic domain JTE88_05065 PF02806 Alpha amylase, C-terminal all-beta domain JTE88_05065 PF03714 Bacterial pullanase-associated domain JTE88_05080 PF04055 Radical SAM superfamily JTE88_05085 PF02390 Putative methyltransferase JTE88_05090 PF00679 Elongation factor G C-terminus JTE88_05090 PF00009 Elongation factor Tu GTP binding domain JTE88_05090 PF06421 GTP-binding protein LepA C-terminus JTE88_05110 PF01649 Ribosomal protein S20 JTE88_05130 PF05872 Bacterial protein of unknown function (DUF853) JTE88_05135 PF01263 Aldose 1-epimerase JTE88_05140 PF09334 tRNA synthetases class I (M) JTE88_05140 PF13603 Leucyl-tRNA synthetase, Domain 2 JTE88_05140 PF08264 Anticodon-binding domain of tRNA JTE88_05145 PF01230 HIT domain JTE88_05160 PF01594 AI-2E family transporter JTE88_05165 PF01048 Phosphorylase superfamily JTE88_05175 PF00005 ABC transporter JTE88_05175 PF09383 NIL domain JTE88_05180 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_05185 PF03180 NLPA lipoprotein JTE88_05190 PF00171 Aldehyde dehydrogenase family JTE88_05195 PF00474 Sodium:solute symporter family JTE88_05200 PF01470 Pyroglutamyl peptidase JTE88_05205 PF00082 Subtilase family JTE88_05205 PF06280 Fn3-like domain JTE88_05205 PF00746 LPXTG cell wall anchor motif JTE88_05205 PF02225 PA domain JTE88_05215 PF12697 Alpha/beta hydrolase family JTE88_05220 PF16995 Transmembrane region of lysyl-tRNA synthetase JTE88_05220 PF01336 OB-fold nucleic acid binding domain JTE88_05220 PF00152 tRNA synthetases class II (D, K and N) JTE88_05220 PF09924 Uncharacterised conserved protein (DUF2156) JTE88_05225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JTE88_05225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JTE88_05230 PF00156 Phosphoribosyl transferase domain JTE88_05235 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JTE88_05240 PF01180 Dihydroorotate dehydrogenase JTE88_05245 PF00175 Oxidoreductase NAD-binding domain JTE88_05245 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B JTE88_05250 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JTE88_05250 PF02142 MGS-like domain JTE88_05250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JTE88_05255 PF01979 Amidohydrolase family JTE88_05265 PF03553 Na+/H+ antiporter family JTE88_05270 PF01197 Ribosomal protein L31 JTE88_05275 PF07859 alpha/beta hydrolase fold JTE88_05280 PF07690 Major Facilitator Superfamily JTE88_05290 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JTE88_05295 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JTE88_05300 PF00781 Diacylglycerol kinase catalytic domain JTE88_05315 PF01381 Helix-turn-helix JTE88_05320 PF00916 Sulfate permease family JTE88_05320 PF01740 STAS domain JTE88_05325 PF01022 Bacterial regulatory protein, arsR family JTE88_05350 PF00654 Voltage gated chloride channel JTE88_05355 PF00571 CBS domain JTE88_05355 PF00005 ABC transporter JTE88_05360 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_05370 PF08000 Bacterial PH domain JTE88_05400 PF00300 Histidine phosphatase superfamily (branch 1) JTE88_05420 PF00085 Thioredoxin JTE88_05430 PF01926 50S ribosome-binding GTPase JTE88_05430 PF01018 GTP1/OBG JTE88_05430 PF09269 Domain of unknown function (DUF1967) JTE88_05435 PF01016 Ribosomal L27 protein JTE88_05440 PF00829 Ribosomal prokaryotic L21 protein JTE88_05445 PF10150 Ribonuclease E/G family JTE88_05450 PF01654 Cytochrome bd terminal oxidase subunit I JTE88_05455 PF02322 Cytochrome bd terminal oxidase subunit II JTE88_05460 PF00664 ABC transporter transmembrane region JTE88_05460 PF00005 ABC transporter JTE88_05465 PF00005 ABC transporter JTE88_05465 PF00664 ABC transporter transmembrane region JTE88_05470 PF07730 Histidine kinase JTE88_05470 PF13185 GAF domain JTE88_05470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_05475 PF00072 Response regulator receiver domain JTE88_05475 PF00196 Bacterial regulatory proteins, luxR family JTE88_05480 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JTE88_05480 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JTE88_05480 PF06827 Zinc finger found in FPG and IleRS JTE88_05485 PF00035 Double-stranded RNA binding motif JTE88_05485 PF14622 Ribonuclease-III-like JTE88_05490 PF02620 Large ribosomal RNA subunit accumulation protein YceD JTE88_05500 PF01467 Cytidylyltransferase-like JTE88_05510 PF17191 RecG wedge domain JTE88_05510 PF00270 DEAD/DEAH box helicase JTE88_05510 PF00271 Helicase conserved C-terminal domain JTE88_05515 PF00830 Ribosomal L28 family JTE88_05520 PF02769 AIR synthase related protein, C-terminal domain JTE88_05520 PF00586 AIR synthase related protein, N-terminal domain JTE88_05525 PF07478 D-ala D-ala ligase C-terminus JTE88_05525 PF01820 D-ala D-ala ligase N-terminus JTE88_05535 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JTE88_05545 PF00534 Glycosyl transferases group 1 JTE88_05545 PF13439 Glycosyltransferase Family 4 JTE88_05550 PF01432 Peptidase family M3 JTE88_05590 PF00749 tRNA synthetases class I (E and Q), catalytic domain JTE88_05605 PF01910 Thiamine-binding protein JTE88_05630 PF00578 AhpC/TSA family JTE88_05645 PF01725 Ham1 family JTE88_05650 PF01138 3' exoribonuclease family, domain 1 JTE88_05650 PF03725 3' exoribonuclease family, domain 2 JTE88_05665 PF13784 Fic/DOC family N-terminal JTE88_05665 PF02661 Fic/DOC family JTE88_05670 PF12706 Beta-lactamase superfamily domain JTE88_05675 PF01177 Asp/Glu/Hydantoin racemase JTE88_05685 PF02617 ATP-dependent Clp protease adaptor protein ClpS JTE88_05690 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JTE88_05690 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JTE88_05695 PF04851 Type III restriction enzyme, res subunit JTE88_05705 PF00216 Bacterial DNA-binding protein JTE88_05710 PF02080 TrkA-C domain JTE88_05710 PF06826 Predicted Permease Membrane Region JTE88_05715 PF00756 Putative esterase JTE88_05720 PF00381 PTS HPr component phosphorylation site JTE88_05725 PF02733 Dak1 domain JTE88_05730 PF01594 AI-2E family transporter JTE88_05735 PF02540 NAD synthase JTE88_05750 PF02678 Pirin JTE88_05750 PF05726 Pirin C-terminal cupin domain JTE88_05755 PF08402 TOBE domain JTE88_05755 PF00005 ABC transporter JTE88_05765 PF07690 Major Facilitator Superfamily JTE88_05770 PF00072 Response regulator receiver domain JTE88_05770 PF00486 Transcriptional regulatory protein, C terminal JTE88_05775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_05775 PF00512 His Kinase A (phospho-acceptor) domain JTE88_05775 PF13426 PAS domain JTE88_05775 PF00989 PAS fold JTE88_05775 PF13188 PAS domain JTE88_05780 PF00762 Ferrochelatase JTE88_05785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JTE88_05785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JTE88_05785 PF00205 Thiamine pyrophosphate enzyme, central domain JTE88_05810 PF17676 LD-carboxypeptidase C-terminal domain JTE88_05810 PF02016 LD-carboxypeptidase N-terminal domain JTE88_05825 PF00578 AhpC/TSA family JTE88_05825 PF17991 Thioredoxin like C-terminal domain JTE88_05825 PF02683 Cytochrome C biogenesis protein transmembrane region JTE88_05830 PF04542 Sigma-70 region 2 JTE88_05830 PF04545 Sigma-70, region 4 JTE88_05835 PF10099 Anti-sigma-K factor rskA JTE88_05865 PF01174 SNO glutamine amidotransferase family JTE88_05870 PF01680 SOR/SNZ family JTE88_05880 PF07155 ECF-type riboflavin transporter, S component JTE88_05885 PF12558 ATP-binding cassette cobalt transporter JTE88_05885 PF00005 ABC transporter JTE88_05890 PF02361 Cobalt transport protein JTE88_05895 PF01966 HD domain JTE88_05900 PF00950 ABC 3 transport family JTE88_05905 PF00005 ABC transporter JTE88_05910 PF01297 Zinc-uptake complex component A periplasmic JTE88_05920 PF00392 Bacterial regulatory proteins, gntR family JTE88_05925 PF00005 ABC transporter JTE88_05935 PF00005 ABC transporter JTE88_05940 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_05945 PF00497 Bacterial extracellular solute-binding proteins, family 3 JTE88_05950 PF05525 Branched-chain amino acid transport protein JTE88_05965 PF13732 Domain of unknown function (DUF4162) JTE88_05965 PF00005 ABC transporter JTE88_05970 PF10509 Galactokinase galactose-binding signature JTE88_05970 PF00288 GHMP kinases N terminal domain JTE88_05970 PF08544 GHMP kinases C terminal JTE88_05980 PF01925 Sulfite exporter TauE/SafE JTE88_05995 PF00206 Lyase JTE88_05995 PF10397 Adenylosuccinate lyase C-terminus JTE88_06000 PF00709 Adenylosuccinate synthetase JTE88_06005 PF00478 IMP dehydrogenase / GMP reductase domain JTE88_06005 PF00571 CBS domain JTE88_06035 PF00005 ABC transporter JTE88_06040 PF00005 ABC transporter JTE88_06040 PF08021 Siderophore-interacting FAD-binding domain JTE88_06040 PF04954 Siderophore-interacting protein JTE88_06040 PF00664 ABC transporter transmembrane region JTE88_06045 PF00005 ABC transporter JTE88_06065 PF00005 ABC transporter JTE88_06070 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_06075 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_06080 PF12849 PBP superfamily domain JTE88_06085 PF00486 Transcriptional regulatory protein, C terminal JTE88_06085 PF00072 Response regulator receiver domain JTE88_06090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_06090 PF00512 His Kinase A (phospho-acceptor) domain JTE88_06095 PF01895 PhoU domain JTE88_06110 PF01022 Bacterial regulatory protein, arsR family JTE88_06145 PF13344 Haloacid dehalogenase-like hydrolase JTE88_06150 PF01668 SmpB protein JTE88_06155 PF01476 LysM domain JTE88_06155 PF08525 Opacity-associated protein A N-terminal motif JTE88_06155 PF01551 Peptidase family M23 JTE88_06160 PF02687 FtsX-like permease family JTE88_06160 PF18075 FtsX extracellular domain JTE88_06165 PF00005 ABC transporter JTE88_06170 PF03462 PCRF domain JTE88_06170 PF00472 RF-1 domain JTE88_06205 PF00437 Type II/IV secretion system protein JTE88_06215 PF13361 UvrD-like helicase C-terminal domain JTE88_06215 PF00580 UvrD/REP helicase N-terminal domain JTE88_06225 PF05661 Protein of unknown function (DUF808) JTE88_06235 PF00271 Helicase conserved C-terminal domain JTE88_06235 PF00270 DEAD/DEAH box helicase JTE88_06240 PF01914 MarC family integral membrane protein JTE88_06250 PF05195 Aminopeptidase P, N-terminal domain JTE88_06250 PF00557 Metallopeptidase family M24 JTE88_06265 PF10609 NUBPL iron-transfer P-loop NTPase JTE88_06265 PF01883 Iron-sulfur cluster assembly protein JTE88_06270 PF01596 O-methyltransferase JTE88_06275 PF00902 Sec-independent protein translocase protein (TatC) JTE88_06280 PF02416 mttA/Hcf106 family JTE88_06290 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_06295 PF01967 MoaC family JTE88_06300 PF00994 Probable molybdopterin binding domain JTE88_06300 PF03453 MoeA N-terminal region (domain I and II) JTE88_06300 PF03454 MoeA C-terminal region (domain IV) JTE88_06305 PF00581 Rhodanese-like domain JTE88_06305 PF00899 ThiF family JTE88_06310 PF00994 Probable molybdopterin binding domain JTE88_06320 PF06463 Molybdenum Cofactor Synthesis C JTE88_06320 PF04055 Radical SAM superfamily JTE88_06330 PF02613 Nitrate reductase delta subunit JTE88_06340 PF12800 4Fe-4S binding domain JTE88_06340 PF13247 4Fe-4S dicluster domain JTE88_06345 PF00384 Molybdopterin oxidoreductase JTE88_06345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JTE88_06345 PF01568 Molydopterin dinucleotide binding domain JTE88_06380 PF01048 Phosphorylase superfamily JTE88_06385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JTE88_06385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JTE88_06385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JTE88_06385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JTE88_06390 PF01791 DeoC/LacD family aldolase JTE88_06400 PF02885 Glycosyl transferase family, helical bundle domain JTE88_06400 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JTE88_06400 PF00591 Glycosyl transferase family, a/b domain JTE88_06405 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JTE88_06410 PF02653 Branched-chain amino acid transport system / permease component JTE88_06415 PF02653 Branched-chain amino acid transport system / permease component JTE88_06420 PF00005 ABC transporter JTE88_06425 PF02608 ABC transporter substrate-binding protein PnrA-like JTE88_06430 PF01050 Mannose-6-phosphate isomerase JTE88_06430 PF00483 Nucleotidyl transferase JTE88_06445 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JTE88_06445 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JTE88_06450 PF00464 Serine hydroxymethyltransferase JTE88_06455 PF00551 Formyl transferase JTE88_06460 PF14602 Hexapeptide repeat of succinyl-transferase JTE88_06460 PF12464 Maltose acetyltransferase JTE88_06465 PF02810 SEC-C motif JTE88_06470 PF00056 lactate/malate dehydrogenase, NAD binding domain JTE88_06470 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JTE88_06485 PF00342 Phosphoglucose isomerase JTE88_06490 PF03714 Bacterial pullanase-associated domain JTE88_06490 PF00128 Alpha amylase, catalytic domain JTE88_06490 PF02806 Alpha amylase, C-terminal all-beta domain JTE88_06495 PF00365 Phosphofructokinase JTE88_06515 PF00549 CoA-ligase JTE88_06515 PF02629 CoA binding domain JTE88_06520 PF08442 ATP-grasp domain JTE88_06520 PF00549 CoA-ligase JTE88_06525 PF01757 Acyltransferase family JTE88_06530 PF00580 UvrD/REP helicase N-terminal domain JTE88_06530 PF13361 UvrD-like helicase C-terminal domain JTE88_06540 PF13411 MerR HTH family regulatory protein JTE88_06545 PF00083 Sugar (and other) transporter JTE88_06545 PF07690 Major Facilitator Superfamily JTE88_06550 PF06628 Catalase-related immune-responsive JTE88_06550 PF00199 Catalase JTE88_06555 PF00293 NUDIX domain JTE88_06560 PF00348 Polyprenyl synthetase JTE88_06570 PF01593 Flavin containing amine oxidoreductase JTE88_06580 PF01040 UbiA prenyltransferase family JTE88_06600 PF13091 PLD-like domain JTE88_06600 PF13087 AAA domain JTE88_06660 PF00176 SNF2 family N-terminal domain JTE88_06660 PF00271 Helicase conserved C-terminal domain JTE88_06690 PF02540 NAD synthase JTE88_06690 PF00958 GMP synthase C terminal domain JTE88_06690 PF00117 Glutamine amidotransferase class-I JTE88_06700 PF00849 RNA pseudouridylate synthase JTE88_06705 PF07085 DRTGG domain JTE88_06705 PF01515 Phosphate acetyl/butaryl transferase JTE88_06710 PF00871 Acetokinase family JTE88_06735 PF00206 Lyase JTE88_06735 PF10415 Fumarase C C-terminus JTE88_06740 PF00478 IMP dehydrogenase / GMP reductase domain JTE88_06750 PF07992 Pyridine nucleotide-disulphide oxidoreductase JTE88_06750 PF13192 Thioredoxin domain JTE88_06755 PF10417 C-terminal domain of 1-Cys peroxiredoxin JTE88_06755 PF00578 AhpC/TSA family JTE88_06760 PF00478 IMP dehydrogenase / GMP reductase domain JTE88_06760 PF00571 CBS domain JTE88_06765 PF02467 Transcription factor WhiB JTE88_06770 PF00166 Chaperonin 10 Kd subunit JTE88_06785 PF00166 Chaperonin 10 Kd subunit JTE88_06800 PF00814 Glycoprotease family JTE88_06805 PF13085 2Fe-2S iron-sulfur cluster binding domain JTE88_06805 PF13183 4Fe-4S dicluster domain JTE88_06810 PF00890 FAD binding domain JTE88_06810 PF02910 Fumarate reductase flavoprotein C-term JTE88_06820 PF00583 Acetyltransferase (GNAT) family JTE88_06835 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JTE88_06840 PF01168 Alanine racemase, N-terminal domain JTE88_06840 PF00842 Alanine racemase, C-terminal domain JTE88_06845 PF01256 Carbohydrate kinase JTE88_06850 PF01380 SIS domain JTE88_06855 PF00485 Phosphoribulokinase / Uridine kinase family JTE88_06860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JTE88_06860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JTE88_06860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JTE88_06860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JTE88_06865 PF00380 Ribosomal protein S9/S16 JTE88_06870 PF00572 Ribosomal protein L13 JTE88_06875 PF01416 tRNA pseudouridine synthase JTE88_06880 PF00480 ROK family JTE88_06885 PF01196 Ribosomal protein L17 JTE88_06890 PF01000 RNA polymerase Rpb3/RpoA insert domain JTE88_06890 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JTE88_06890 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JTE88_06895 PF00411 Ribosomal protein S11 JTE88_06900 PF00416 Ribosomal protein S13/S18 JTE88_06905 PF00444 Ribosomal protein L36 JTE88_06910 PF01176 Translation initiation factor 1A / IF-1 JTE88_06915 PF00557 Metallopeptidase family M24 JTE88_06925 PF00344 SecY translocase JTE88_06930 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JTE88_06935 PF00327 Ribosomal protein L30p/L7e JTE88_06940 PF00333 Ribosomal protein S5, N-terminal domain JTE88_06940 PF03719 Ribosomal protein S5, C-terminal domain JTE88_06945 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JTE88_06950 PF00347 Ribosomal protein L6 JTE88_06955 PF00410 Ribosomal protein S8 JTE88_06960 PF00253 Ribosomal protein S14p/S29e JTE88_06965 PF00673 ribosomal L5P family C-terminus JTE88_06965 PF00281 Ribosomal protein L5 JTE88_06970 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JTE88_06975 PF00238 Ribosomal protein L14p/L23e JTE88_06980 PF00366 Ribosomal protein S17 JTE88_06985 PF00831 Ribosomal L29 protein JTE88_06990 PF00252 Ribosomal protein L16p/L10e JTE88_06995 PF00189 Ribosomal protein S3, C-terminal domain JTE88_06995 PF07650 KH domain JTE88_07000 PF00237 Ribosomal protein L22p/L17e JTE88_07005 PF00203 Ribosomal protein S19 JTE88_07010 PF03947 Ribosomal Proteins L2, C-terminal domain JTE88_07010 PF00181 Ribosomal Proteins L2, RNA binding domain JTE88_07015 PF00276 Ribosomal protein L23 JTE88_07020 PF00573 Ribosomal protein L4/L1 family JTE88_07025 PF00297 Ribosomal protein L3 JTE88_07030 PF00338 Ribosomal protein S10p/S20e JTE88_07035 PF03143 Elongation factor Tu C-terminal domain JTE88_07035 PF00009 Elongation factor Tu GTP binding domain JTE88_07035 PF03144 Elongation factor Tu domain 2 JTE88_07040 PF03144 Elongation factor Tu domain 2 JTE88_07040 PF00679 Elongation factor G C-terminus JTE88_07040 PF00009 Elongation factor Tu GTP binding domain JTE88_07040 PF03764 Elongation factor G, domain IV JTE88_07040 PF14492 Elongation Factor G, domain II JTE88_07045 PF00177 Ribosomal protein S7p/S5e JTE88_07050 PF00164 Ribosomal protein S12/S23 JTE88_07055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JTE88_07055 PF08447 PAS fold JTE88_07060 PF00623 RNA polymerase Rpb1, domain 2 JTE88_07060 PF04983 RNA polymerase Rpb1, domain 3 JTE88_07060 PF04997 RNA polymerase Rpb1, domain 1 JTE88_07060 PF05000 RNA polymerase Rpb1, domain 4 JTE88_07060 PF04998 RNA polymerase Rpb1, domain 5 JTE88_07065 PF10385 RNA polymerase beta subunit external 1 domain JTE88_07065 PF04563 RNA polymerase beta subunit JTE88_07065 PF00562 RNA polymerase Rpb2, domain 6 JTE88_07065 PF04560 RNA polymerase Rpb2, domain 7 JTE88_07065 PF04565 RNA polymerase Rpb2, domain 3 JTE88_07065 PF04561 RNA polymerase Rpb2, domain 2 JTE88_07070 PF00542 Ribosomal protein L7/L12 C-terminal domain JTE88_07070 PF16320 Ribosomal protein L7/L12 dimerisation domain JTE88_07075 PF00466 Ribosomal protein L10 JTE88_07080 PF00485 Phosphoribulokinase / Uridine kinase family JTE88_07085 PF00687 Ribosomal protein L1p/L10e family JTE88_07090 PF03946 Ribosomal protein L11, N-terminal domain JTE88_07090 PF00298 Ribosomal protein L11, RNA binding domain JTE88_07095 PF02357 Transcription termination factor nusG JTE88_07110 PF00155 Aminotransferase class I and II JTE88_07125 PF00962 Adenosine/AMP deaminase JTE88_07140 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JTE88_07140 PF01565 FAD binding domain JTE88_07145 PF00471 Ribosomal protein L33 JTE88_07165 PF04461 Protein of unknown function (DUF520) JTE88_07170 PF07992 Pyridine nucleotide-disulphide oxidoreductase JTE88_07180 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JTE88_07180 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JTE88_07190 PF10647 Lipoprotein LpqB beta-propeller domain JTE88_07195 PF00672 HAMP domain JTE88_07195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_07195 PF00512 His Kinase A (phospho-acceptor) domain JTE88_07200 PF00486 Transcriptional regulatory protein, C terminal JTE88_07200 PF00072 Response regulator receiver domain JTE88_07225 PF02467 Transcription factor WhiB JTE88_07235 PF03816 Cell envelope-related transcriptional attenuator domain JTE88_07240 PF03816 Cell envelope-related transcriptional attenuator domain JTE88_07245 PF00672 HAMP domain JTE88_07245 PF00512 His Kinase A (phospho-acceptor) domain JTE88_07245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_07250 PF00486 Transcriptional regulatory protein, C terminal JTE88_07250 PF00072 Response regulator receiver domain JTE88_07255 PF00211 Adenylate and Guanylate cyclase catalytic domain JTE88_07255 PF16701 Adenylate cyclase regulatory domain JTE88_07265 PF02545 Maf-like protein JTE88_07270 PF00285 Citrate synthase, C-terminal domain JTE88_07275 PF00037 4Fe-4S binding domain JTE88_07290 PF00679 Elongation factor G C-terminus JTE88_07290 PF00009 Elongation factor Tu GTP binding domain JTE88_07290 PF03144 Elongation factor Tu domain 2 JTE88_07290 PF14492 Elongation Factor G, domain II JTE88_07300 PF00005 ABC transporter JTE88_07300 PF00664 ABC transporter transmembrane region JTE88_07305 PF00664 ABC transporter transmembrane region JTE88_07305 PF00005 ABC transporter JTE88_07315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JTE88_07315 PF00005 ABC transporter JTE88_07320 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_07320 PF12911 N-terminal TM domain of oligopeptide transport permease C JTE88_07325 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_07330 PF03099 Biotin/lipoate A/B protein ligase family JTE88_07335 PF04055 Radical SAM superfamily JTE88_07335 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JTE88_07340 PF13193 AMP-binding enzyme C-terminal domain JTE88_07340 PF00501 AMP-binding enzyme JTE88_07345 PF02127 Aminopeptidase I zinc metalloprotease (M18) JTE88_07350 PF00561 alpha/beta hydrolase fold JTE88_07360 PF03971 Monomeric isocitrate dehydrogenase JTE88_07370 PF00056 lactate/malate dehydrogenase, NAD binding domain JTE88_07370 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JTE88_07375 PF01557 Fumarylacetoacetate (FAA) hydrolase family JTE88_07380 PF00561 alpha/beta hydrolase fold JTE88_07390 PF01546 Peptidase family M20/M25/M40 JTE88_07390 PF07687 Peptidase dimerisation domain JTE88_07395 PF02378 Phosphotransferase system, EIIC JTE88_07395 PF00367 phosphotransferase system, EIIB JTE88_07395 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JTE88_07405 PF00391 PEP-utilising enzyme, mobile domain JTE88_07405 PF02896 PEP-utilising enzyme, TIM barrel domain JTE88_07405 PF05524 PEP-utilising enzyme, N-terminal JTE88_07410 PF00381 PTS HPr component phosphorylation site JTE88_07430 PF03358 NADPH-dependent FMN reductase JTE88_07435 PF00210 Ferritin-like domain JTE88_07440 PF00581 Rhodanese-like domain JTE88_07445 PF07885 Ion channel JTE88_07485 PF16555 Gram-positive pilin subunit D1, N-terminal domain JTE88_07485 PF00746 LPXTG cell wall anchor motif JTE88_07515 PF13276 HTH-like domain JTE88_07515 PF13333 Integrase core domain JTE88_07515 PF00665 Integrase core domain JTE88_07545 PF00145 C-5 cytosine-specific DNA methylase JTE88_07545 PF01381 Helix-turn-helix JTE88_07550 PF13649 Methyltransferase domain JTE88_07565 PF13784 Fic/DOC family N-terminal JTE88_07565 PF02661 Fic/DOC family JTE88_07575 PF00209 Sodium:neurotransmitter symporter family JTE88_07590 PF00356 Bacterial regulatory proteins, lacI family JTE88_07595 PF00128 Alpha amylase, catalytic domain JTE88_07600 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_07605 PF00528 Binding-protein-dependent transport system inner membrane component JTE88_07640 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JTE88_07645 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JTE88_07650 PF01926 50S ribosome-binding GTPase JTE88_07650 PF06071 Protein of unknown function (DUF933) JTE88_07655 PF02646 RmuC family JTE88_07660 PF02401 LytB protein JTE88_07665 PF02601 Exonuclease VII, large subunit JTE88_07665 PF13742 OB-fold nucleic acid binding domain JTE88_07670 PF02609 Exonuclease VII small subunit JTE88_07675 PF00294 pfkB family carbohydrate kinase JTE88_07680 PF01255 Putative undecaprenyl diphosphate synthase JTE88_07685 PF03006 Haemolysin-III related JTE88_07690 PF01272 Transcription elongation factor, GreA/GreB, C-term JTE88_07690 PF03449 Transcription elongation factor, N-terminal JTE88_07695 PF01625 Peptide methionine sulfoxide reductase JTE88_07700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JTE88_07710 PF00005 ABC transporter JTE88_07725 PF06965 Na+/H+ antiporter 1 JTE88_07740 PF00665 Integrase core domain JTE88_07740 PF13333 Integrase core domain JTE88_07740 PF13276 HTH-like domain JTE88_07750 PF02541 Ppx/GppA phosphatase family JTE88_07765 PF03952 Enolase, N-terminal domain JTE88_07765 PF00113 Enolase, C-terminal TIM barrel domain JTE88_07770 PF00270 DEAD/DEAH box helicase JTE88_07770 PF02559 CarD-like/TRCF domain JTE88_07770 PF00271 Helicase conserved C-terminal domain JTE88_07770 PF17757 UvrB interaction domain JTE88_07770 PF03461 TRCF domain JTE88_07775 PF01195 Peptidyl-tRNA hydrolase JTE88_07780 PF01386 Ribosomal L25p family JTE88_07780 PF14693 Ribosomal protein TL5, C-terminal domain JTE88_07785 PF14572 Phosphoribosyl synthetase-associated domain JTE88_07785 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JTE88_07790 PF12804 MobA-like NTP transferase domain JTE88_07790 PF00132 Bacterial transferase hexapeptide (six repeats) JTE88_07800 PF00440 Bacterial regulatory proteins, tetR family JTE88_07805 PF13732 Domain of unknown function (DUF4162) JTE88_07805 PF00005 ABC transporter JTE88_07825 PF00005 ABC transporter JTE88_07825 PF16326 ABC transporter C-terminal domain JTE88_07825 PF12848 ABC transporter JTE88_07830 PF00288 GHMP kinases N terminal domain JTE88_07830 PF08544 GHMP kinases C terminal JTE88_07835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JTE88_07840 PF02378 Phosphotransferase system, EIIC JTE88_07840 PF00367 phosphotransferase system, EIIB JTE88_07845 PF00874 PRD domain JTE88_07845 PF03123 CAT RNA binding domain JTE88_07850 PF00398 Ribosomal RNA adenine dimethylase JTE88_07860 PF01026 TatD related DNase JTE88_07865 PF09334 tRNA synthetases class I (M) JTE88_07870 PF00857 Isochorismatase family JTE88_07875 PF03176 MMPL family JTE88_07880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JTE88_07890 PF00005 ABC transporter JTE88_07900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_07900 PF07730 Histidine kinase JTE88_07905 PF00072 Response regulator receiver domain JTE88_07905 PF00196 Bacterial regulatory proteins, luxR family JTE88_07930 PF00994 Probable molybdopterin binding domain JTE88_07930 PF03453 MoeA N-terminal region (domain I and II) JTE88_07930 PF03454 MoeA C-terminal region (domain IV) JTE88_07935 PF01812 5-formyltetrahydrofolate cyclo-ligase family JTE88_07945 PF01741 Large-conductance mechanosensitive channel, MscL JTE88_07960 PF12368 Rhodanase C-terminal JTE88_07960 PF17773 UPF0176 acylphosphatase like domain JTE88_07960 PF00581 Rhodanese-like domain JTE88_07970 PF00582 Universal stress protein family JTE88_07975 PF00877 NlpC/P60 family JTE88_07980 PF02742 Iron dependent repressor, metal binding and dimerisation domain JTE88_07980 PF01325 Iron dependent repressor, N-terminal DNA binding domain JTE88_07980 PF18357 Diphteria toxin repressor SH3 domain JTE88_07985 PF00860 Permease family JTE88_07990 PF01238 Phosphomannose isomerase type I JTE88_07995 PF11228 Protein of unknown function (DUF3027) JTE88_08000 PF00313 'Cold-shock' DNA-binding domain JTE88_08010 PF04012 PspA/IM30 family JTE88_08020 PF00072 Response regulator receiver domain JTE88_08020 PF00486 Transcriptional regulatory protein, C terminal JTE88_08025 PF00672 HAMP domain JTE88_08025 PF00512 His Kinase A (phospho-acceptor) domain JTE88_08025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_08035 PF00106 short chain dehydrogenase JTE88_08050 PF00118 TCP-1/cpn60 chaperonin family JTE88_08065 PF03167 Uracil DNA glycosylase superfamily JTE88_08075 PF00155 Aminotransferase class I and II JTE88_08080 PF08240 Alcohol dehydrogenase GroES-like domain JTE88_08080 PF00107 Zinc-binding dehydrogenase JTE88_08085 PF02386 Cation transport protein JTE88_08095 PF01235 Sodium:alanine symporter family JTE88_08110 PF00069 Protein kinase domain JTE88_08110 PF13360 PQQ-like domain JTE88_08115 PF17912 MalK OB fold domain JTE88_08115 PF00005 ABC transporter JTE88_08125 PF02132 RecR protein JTE88_08125 PF13662 Toprim domain JTE88_08130 PF12169 DNA polymerase III subunits gamma and tau domain III JTE88_08155 PF00860 Permease family JTE88_08170 PF08032 RNA 2'-O ribose methyltransferase substrate binding JTE88_08170 PF00588 SpoU rRNA Methylase family JTE88_08175 PF01406 tRNA synthetases class I (C) catalytic domain JTE88_08175 PF09190 DALR domain JTE88_08185 PF02542 YgbB family JTE88_08190 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JTE88_08195 PF02559 CarD-like/TRCF domain JTE88_08200 PF00300 Histidine phosphatase superfamily (branch 1) JTE88_08205 PF03733 Inner membrane component domain JTE88_08210 PF07992 Pyridine nucleotide-disulphide oxidoreductase JTE88_08210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JTE88_08215 PF02583 Metal-sensitive transcriptional repressor JTE88_08225 PF00860 Permease family JTE88_08260 PF00589 Phage integrase family JTE88_08260 PF02899 Phage integrase, N-terminal SAM-like domain JTE88_08265 PF13614 AAA domain JTE88_08300 PF03432 Relaxase/Mobilisation nuclease domain JTE88_08340 PF01551 Peptidase family M23 JTE88_08340 PF01464 Transglycosylase SLT domain JTE88_08340 PF10145 Phage-related minor tail protein JTE88_08380 PF00561 alpha/beta hydrolase fold JTE88_08390 PF02223 Thymidylate kinase JTE88_08395 PF01131 DNA topoisomerase JTE88_08395 PF13368 Topoisomerase C-terminal repeat JTE88_08395 PF01751 Toprim domain JTE88_08400 PF05175 Methyltransferase small domain JTE88_08400 PF17827 PrmC N-terminal domain JTE88_08415 PF00271 Helicase conserved C-terminal domain JTE88_08415 PF09369 Domain of unknown function (DUF1998) JTE88_08415 PF00270 DEAD/DEAH box helicase JTE88_08445 PF00437 Type II/IV secretion system protein JTE88_08460 PF00561 alpha/beta hydrolase fold JTE88_08465 PF10576 Iron-sulfur binding domain of endonuclease III JTE88_08465 PF00633 Helix-hairpin-helix motif JTE88_08465 PF00730 HhH-GPD superfamily base excision DNA repair protein JTE88_08470 PF13545 Crp-like helix-turn-helix domain JTE88_08470 PF00027 Cyclic nucleotide-binding domain JTE88_08485 PF02467 Transcription factor WhiB JTE88_08490 PF00912 Transglycosylase JTE88_08490 PF00905 Penicillin binding protein transpeptidase domain JTE88_08505 PF00294 pfkB family carbohydrate kinase JTE88_08515 PF07690 Major Facilitator Superfamily JTE88_08520 PF04198 Putative sugar-binding domain JTE88_08530 PF13088 BNR repeat-like domain JTE88_08530 PF00754 F5/8 type C domain JTE88_08530 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase JTE88_08545 PF08903 Domain of unknown function (DUF1846) JTE88_08550 PF01327 Polypeptide deformylase JTE88_08580 PF00183 Hsp90 protein JTE88_08580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JTE88_08595 PF13333 Integrase core domain JTE88_08595 PF13276 HTH-like domain JTE88_08595 PF00665 Integrase core domain JTE88_08625 PF14437 MafB19-like deaminase JTE88_08645 PF00535 Glycosyl transferase family 2 JTE88_08655 PF02142 MGS-like domain JTE88_08655 PF00781 Diacylglycerol kinase catalytic domain JTE88_08660 PF02403 Seryl-tRNA synthetase N-terminal domain JTE88_08660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JTE88_08695 PF16363 GDP-mannose 4,6 dehydratase JTE88_08700 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JTE88_08700 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JTE88_08705 PF01636 Phosphotransferase enzyme family JTE88_08710 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain JTE88_08710 PF17386 Lacto-N-biose phosphorylase C-terminal domain JTE88_08710 PF17385 Lacto-N-biose phosphorylase central domain JTE88_08740 PF18395 Cas3 C-terminal domain JTE88_08740 PF18019 HD domain JTE88_08740 PF00270 DEAD/DEAH box helicase JTE88_08745 PF01867 CRISPR associated protein Cas1 JTE88_08775 PF08245 Mur ligase middle domain JTE88_08775 PF08353 Domain of unknown function (DUF1727) JTE88_08790 PF05958 tRNA (Uracil-5-)-methyltransferase JTE88_08820 PF00270 DEAD/DEAH box helicase JTE88_08820 PF04408 Helicase associated domain (HA2) JTE88_08820 PF08482 ATP-dependent helicase C-terminal JTE88_08820 PF00271 Helicase conserved C-terminal domain JTE88_08835 PF01702 Queuine tRNA-ribosyltransferase JTE88_08855 PF13462 Thioredoxin JTE88_08855 PF06965 Na+/H+ antiporter 1 JTE88_08865 PF00248 Aldo/keto reductase family JTE88_08870 PF08335 GlnD PII-uridylyltransferase JTE88_08870 PF01966 HD domain JTE88_08875 PF00772 DnaB-like helicase N terminal domain JTE88_08875 PF03796 DnaB-like helicase C terminal domain JTE88_08895 PF01281 Ribosomal protein L9, N-terminal domain JTE88_08895 PF03948 Ribosomal protein L9, C-terminal domain JTE88_08900 PF01084 Ribosomal protein S18 JTE88_08905 PF00436 Single-strand binding protein family JTE88_08910 PF01250 Ribosomal protein S6 JTE88_08915 PF00905 Penicillin binding protein transpeptidase domain JTE88_08915 PF00912 Transglycosylase JTE88_08920 PF01594 AI-2E family transporter JTE88_08925 PF07690 Major Facilitator Superfamily JTE88_08930 PF12627 Probable RNA and SrmB- binding site of polymerase A JTE88_08930 PF01966 HD domain JTE88_08930 PF01743 Poly A polymerase head domain JTE88_08935 PF00293 NUDIX domain JTE88_08950 PF07992 Pyridine nucleotide-disulphide oxidoreductase JTE88_08955 PF00085 Thioredoxin JTE88_08960 PF00155 Aminotransferase class I and II JTE88_08960 PF00392 Bacterial regulatory proteins, gntR family JTE88_08965 PF02195 ParB-like nuclease domain JTE88_08965 PF17762 HTH domain found in ParB protein JTE88_08970 PF13614 AAA domain JTE88_08975 PF02527 rRNA small subunit methyltransferase G JTE88_08980 PF14804 Jag N-terminus JTE88_08980 PF01424 R3H domain JTE88_08985 PF02096 60Kd inner membrane protein JTE88_08990 PF01809 Putative membrane protein insertion efficiency factor JTE88_08995 PF00825 Ribonuclease P JTE88_09000 PF00468 Ribosomal protein L34