locus-tag class description AF_0004 PF00005 ABC transporter AF_0006 PF02310 B12 binding domain AF_0006 PF02607 B12 binding domain AF_0009 PF02007 Tetrahydromethanopterin S-methyltransferase MtrH subunit AF_0011 PF02310 B12 binding domain AF_0011 PF02607 B12 binding domain AF_0017 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF_0017 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF_0018 PF00108 Thiolase, N-terminal domain AF_0018 PF02803 Thiolase, C-terminal domain AF_0020 PF02515 CoA-transferase family III AF_0021 PF17203 Single cache domain 3 AF_0021 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AF_0021 PF00989 PAS fold AF_0021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_0023 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain AF_0023 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AF_0024 PF00465 Iron-containing alcohol dehydrogenase AF_0027 PF08734 GYD domain AF_0033 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AF_0033 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AF_0034 PF02803 Thiolase, C-terminal domain AF_0034 PF00108 Thiolase, N-terminal domain AF_0035 PF01238 Phosphomannose isomerase type I AF_0037 PF02654 Cobalamin-5-phosphate synthase AF_0038 PF13439 Glycosyltransferase Family 4 AF_0038 PF00534 Glycosyl transferases group 1 AF_0039 PF00535 Glycosyl transferase family 2 AF_0041 PF00005 ABC transporter AF_0043 PF00534 Glycosyl transferases group 1 AF_0044 PF16363 GDP-mannose 4,6 dehydratase AF_0050 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) AF_0051 PF07687 Peptidase dimerisation domain AF_0051 PF01546 Peptidase family M20/M25/M40 AF_0061 PF02223 Thymidylate kinase AF_0062 PF00571 CBS domain AF_0071 PF00270 DEAD/DEAH box helicase AF_0071 PF18019 HD domain AF_0071 PF18395 Cas3 C-terminal domain AF_0074 PF02237 Biotin protein ligase C terminal domain AF_0074 PF08279 HTH domain AF_0074 PF03099 Biotin/lipoate A/B protein ligase family AF_0076 PF12800 4Fe-4S binding domain AF_0076 PF13247 4Fe-4S dicluster domain AF_0080 PF00202 Aminotransferase class-III AF_0086 PF00528 Binding-protein-dependent transport system inner membrane component AF_0087 PF00005 ABC transporter AF_0088 PF00005 ABC transporter AF_0089 PF13193 AMP-binding enzyme C-terminal domain AF_0089 PF00501 AMP-binding enzyme AF_0091 PF01557 Fumarylacetoacetate (FAA) hydrolase family AF_0092 PF00005 ABC transporter AF_0092 PF08402 TOBE domain AF_0093 PF00528 Binding-protein-dependent transport system inner membrane component AF_0106 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AF_0106 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AF_0107 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AF_0107 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AF_0108 PF01791 DeoC/LacD family aldolase AF_0110 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AF_0110 PF01409 tRNA synthetases class II core domain (F) AF_0112 PF02146 Sir2 family AF_0115 PF00795 Carbon-nitrogen hydrolase AF_0129 PF04493 Endonuclease V AF_0130 PF00850 Histone deacetylase domain AF_0131 PF00881 Nitroreductase family AF_0140 PF01209 ubiE/COQ5 methyltransferase family AF_0154 PF03239 Iron permease FTR1 family AF_0156 PF04060 Putative Fe-S cluster AF_0157 PF13247 4Fe-4S dicluster domain AF_0159 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AF_0159 PF00384 Molybdopterin oxidoreductase AF_0159 PF01568 Molydopterin dinucleotide binding domain AF_0161 PF03453 MoeA N-terminal region (domain I and II) AF_0161 PF03454 MoeA C-terminal region (domain IV) AF_0161 PF00994 Probable molybdopterin binding domain AF_0164 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AF_0164 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AF_0167 PF00753 Metallo-beta-lactamase superfamily AF_0167 PF00258 Flavodoxin AF_0171 PF00174 Oxidoreductase molybdopterin binding domain AF_0175 PF13247 4Fe-4S dicluster domain AF_0176 PF01568 Molydopterin dinucleotide binding domain AF_0176 PF00384 Molybdopterin oxidoreductase AF_0185 PF01592 NifU-like N terminal domain AF_0186 PF00266 Aminotransferase class-V AF_0188 PF01206 Sulfurtransferase TusA AF_0191 PF00403 Heavy-metal-associated domain AF_0192 PF00403 Heavy-metal-associated domain AF_0196 PF00501 AMP-binding enzyme AF_0196 PF13193 AMP-binding enzyme C-terminal domain AF_0197 PF00501 AMP-binding enzyme AF_0197 PF13193 AMP-binding enzyme C-terminal domain AF_0198 PF00171 Aldehyde dehydrogenase family AF_0198 PF01575 MaoC like domain AF_0199 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_0199 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_0199 PF02770 Acyl-CoA dehydrogenase, middle domain AF_0200 PF00501 AMP-binding enzyme AF_0208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_0208 PF00672 HAMP domain AF_0208 PF00512 His Kinase A (phospho-acceptor) domain AF_0209 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AF_0211 PF03448 MgtE intracellular N domain AF_0211 PF00571 CBS domain AF_0211 PF01769 Divalent cation transporter AF_0212 PF00815 Histidinol dehydrogenase AF_0217 PF02080 TrkA-C domain AF_0217 PF02254 TrkA-N domain AF_0217 PF00999 Sodium/hydrogen exchanger family AF_0219 PF08502 LeuA allosteric (dimerisation) domain AF_0219 PF00682 HMGL-like AF_0220 PF00289 Biotin carboxylase, N-terminal domain AF_0220 PF02785 Biotin carboxylase C-terminal domain AF_0220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AF_0221 PF00005 ABC transporter AF_0222 PF12399 Branched-chain amino acid ATP-binding cassette transporter AF_0222 PF00005 ABC transporter AF_0224 PF02653 Branched-chain amino acid transport system / permease component AF_0226 PF00881 Nitroreductase family AF_0227 PF00800 Prephenate dehydratase AF_0227 PF01817 Chorismate mutase type II AF_0227 PF01842 ACT domain AF_0228 PF01487 Type I 3-dehydroquinase AF_0229 PF01959 3-dehydroquinate synthase II AF_0230 PF01791 DeoC/LacD family aldolase AF_0231 PF00497 Bacterial extracellular solute-binding proteins, family 3 AF_0234 PF12706 Beta-lactamase superfamily domain AF_0235 PF01435 Peptidase family M48 AF_0237 PF00474 Sodium:solute symporter family AF_0239 PF00156 Phosphoribosyl transferase domain AF_0240 PF01979 Amidohydrolase family AF_0240 PF13382 Adenine deaminase C-terminal domain AF_0241 PF01980 tRNA-methyltransferase O AF_0241 PF18389 TrmO C-terminal domain AF_0242 PF00483 Nucleotidyl transferase AF_0245 PF02742 Iron dependent repressor, metal binding and dimerisation domain AF_0245 PF01325 Iron dependent repressor, N-terminal DNA binding domain AF_0245 PF18357 Diphteria toxin repressor SH3 domain AF_0246 PF04023 FeoA domain AF_0246 PF07664 Ferrous iron transport protein B C terminus AF_0246 PF07670 Nucleoside recognition AF_0246 PF17910 FeoB cytosolic helical domain AF_0246 PF02421 Ferrous iron transport protein B AF_0248 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AF_0248 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_0252 PF00117 Glutamine amidotransferase class-I AF_0252 PF06418 CTP synthase N-terminus AF_0253 PF00958 GMP synthase C terminal domain AF_0253 PF00117 Glutamine amidotransferase class-I AF_0253 PF02540 NAD synthase AF_0254 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AF_0254 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_0260 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AF_0260 PF00749 tRNA synthetases class I (E and Q), catalytic domain AF_0262 PF00501 AMP-binding enzyme AF_0262 PF13193 AMP-binding enzyme C-terminal domain AF_0263 PF01066 CDP-alcohol phosphatidyltransferase AF_0263 PF00483 Nucleotidyl transferase AF_0265 PF00994 Probable molybdopterin binding domain AF_0266 PF00892 EamA-like transporter family AF_0270 PF10417 C-terminal domain of 1-Cys peroxiredoxin AF_0270 PF00578 AhpC/TSA family AF_0273 PF17806 Sarcosine oxidase A3 domain AF_0273 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_0273 PF08669 Glycine cleavage T-protein C-terminal barrel domain AF_0273 PF01571 Aminomethyltransferase folate-binding domain AF_0274 PF01266 FAD dependent oxidoreductase AF_0276 PF02277 Phosphoribosyltransferase AF_0280 PF01938 TRAM domain AF_0280 PF05958 tRNA (Uracil-5-)-methyltransferase AF_0283 PF02803 Thiolase, C-terminal domain AF_0283 PF00108 Thiolase, N-terminal domain AF_0285 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF_0285 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF_0286 PF01012 Electron transfer flavoprotein domain AF_0287 PF01012 Electron transfer flavoprotein domain AF_0287 PF00766 Electron transfer flavoprotein FAD-binding domain AF_0290 PF00005 ABC transporter AF_0302 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AF_0302 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AF_0302 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AF_0321 PF01501 Glycosyl transferase family 8 AF_0321 PF00535 Glycosyl transferase family 2 AF_0322 PF00535 Glycosyl transferase family 2 AF_0324 PF16363 GDP-mannose 4,6 dehydratase AF_0325 PF00483 Nucleotidyl transferase AF_0327 PF13439 Glycosyltransferase Family 4 AF_0327 PF00534 Glycosyl transferases group 1 AF_0328 PF00535 Glycosyl transferase family 2 AF_0332 PF02163 Peptidase family M50 AF_0332 PF00571 CBS domain AF_0333 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AF_0333 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AF_0338 PF00437 Type II/IV secretion system protein AF_0339 PF00465 Iron-containing alcohol dehydrogenase AF_0343 PF03358 NADPH-dependent FMN reductase AF_0344 PF01880 Desulfoferrodoxin AF_0346 PF00403 Heavy-metal-associated domain AF_0355 PF12838 4Fe-4S dicluster domain AF_0355 PF13187 4Fe-4S dicluster domain AF_0356 PF00294 pfkB family carbohydrate kinase AF_0358 PF00270 DEAD/DEAH box helicase AF_0358 PF00271 Helicase conserved C-terminal domain AF_0358 PF17191 RecG wedge domain AF_0361 PF01370 NAD dependent epimerase/dehydratase family AF_0364 PF05362 Lon protease (S16) C-terminal proteolytic domain AF_0364 PF00004 ATPase family associated with various cellular activities (AAA) AF_0366 PF13193 AMP-binding enzyme C-terminal domain AF_0366 PF16177 Acetyl-coenzyme A synthetase N-terminus AF_0366 PF00501 AMP-binding enzyme AF_0367 PF07690 Major Facilitator Superfamily AF_0370 PF01008 Initiation factor 2 subunit family AF_0372 PF02634 FdhD/NarQ family AF_0374 PF13344 Haloacid dehalogenase-like hydrolase AF_0376 PF04060 Putative Fe-S cluster AF_0376 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit AF_0377 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit AF_0378 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AF_0379 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain AF_0379 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit AF_0386 PF00156 Phosphoribosyl transferase domain AF_0388 PF04055 Radical SAM superfamily AF_0390 PF04055 Radical SAM superfamily AF_0393 PF00005 ABC transporter AF_0394 PF01565 FAD binding domain AF_0394 PF02913 FAD linked oxidases, C-terminal domain AF_0395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AF_0395 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_0400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AF_0400 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_0401 PF00294 pfkB family carbohydrate kinase AF_0401 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AF_0403 PF01884 PcrB family AF_0406 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AF_0409 PF00155 Aminotransferase class I and II AF_0410 PF00512 His Kinase A (phospho-acceptor) domain AF_0410 PF08447 PAS fold AF_0410 PF00989 PAS fold AF_0410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_0411 PF09190 DALR domain AF_0411 PF01406 tRNA synthetases class I (C) catalytic domain AF_0419 PF03437 BtpA family AF_0422 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AF_0422 PF10414 Sirohaem synthase dimerisation region AF_0423 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AF_0423 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AF_0424 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AF_0424 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AF_0428 PF01926 50S ribosome-binding GTPase AF_0428 PF01018 GTP1/OBG AF_0428 PF09269 Domain of unknown function (DUF1967) AF_0430 PF00005 ABC transporter AF_0431 PF01032 FecCD transport family AF_0433 PF01980 tRNA-methyltransferase O AF_0434 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF_0434 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF_0435 PF00378 Enoyl-CoA hydratase/isomerase AF_0436 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_0436 PF02770 Acyl-CoA dehydrogenase, middle domain AF_0436 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_0438 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AF_0438 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AF_0440 PF01242 6-pyruvoyl tetrahydropterin synthase AF_0441 PF04055 Radical SAM superfamily AF_0442 PF06508 Queuosine biosynthesis protein QueC AF_0444 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AF_0448 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_0448 PF00512 His Kinase A (phospho-acceptor) domain AF_0448 PF13426 PAS domain AF_0448 PF13188 PAS domain AF_0448 PF00989 PAS fold AF_0449 PF00072 Response regulator receiver domain AF_0450 PF00989 PAS fold AF_0450 PF17203 Single cache domain 3 AF_0450 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AF_0450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_0452 PF18073 Rubredoxin metal binding domain AF_0455 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_0455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AF_0458 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AF_0458 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AF_0458 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AF_0458 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AF_0459 PF03176 MMPL family AF_0464 PF01494 FAD binding domain AF_0465 PF03989 DNA gyrase C-terminal domain, beta-propeller AF_0465 PF00521 DNA gyrase/topoisomerase IV, subunit A AF_0467 PF16868 NMT1-like family AF_0468 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF_0469 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AF_0469 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AF_0469 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AF_0473 PF00403 Heavy-metal-associated domain AF_0474 PF01037 Lrp/AsnC ligand binding domain AF_0475 PF01758 Sodium Bile acid symporter family AF_0477 PF00004 ATPase family associated with various cellular activities (AAA) AF_0477 PF17862 AAA+ lid domain AF_0477 PF01434 Peptidase family M41 AF_0481 PF00227 Proteasome subunit AF_0482 PF10996 Beta-Casp domain AF_0482 PF00753 Metallo-beta-lactamase superfamily AF_0482 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AF_0484 PF00925 GTP cyclohydrolase II AF_0484 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AF_0487 PF01804 Penicillin amidase AF_0492 PF00575 S1 RNA binding domain AF_0492 PF03725 3' exoribonuclease family, domain 2 AF_0492 PF01138 3' exoribonuclease family, domain 1 AF_0492 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AF_0492 PF00013 KH domain AF_0493 PF01138 3' exoribonuclease family, domain 1 AF_0493 PF03725 3' exoribonuclease family, domain 2 AF_0493 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AF_0493 PF00013 KH domain AF_0493 PF00575 S1 RNA binding domain AF_0494 PF03725 3' exoribonuclease family, domain 2 AF_0494 PF01138 3' exoribonuclease family, domain 1 AF_0497 PF00136 DNA polymerase family B AF_0497 PF03104 DNA polymerase family B, exonuclease domain AF_0499 PF13247 4Fe-4S dicluster domain AF_0506 PF02665 Nitrate reductase gamma subunit AF_0506 PF13183 4Fe-4S dicluster domain AF_0506 PF02754 Cysteine-rich domain AF_0508 PF01680 SOR/SNZ family AF_0509 PF01174 SNO glutamine amidotransferase family AF_0512 PF01209 ubiE/COQ5 methyltransferase family AF_0520 PF08544 GHMP kinases C terminal AF_0520 PF00288 GHMP kinases N terminal domain AF_0522 PF01546 Peptidase family M20/M25/M40 AF_0522 PF07687 Peptidase dimerisation domain AF_0527 PF01138 3' exoribonuclease family, domain 1 AF_0527 PF03725 3' exoribonuclease family, domain 2 AF_0527 PF00575 S1 RNA binding domain AF_0527 PF00013 KH domain AF_0527 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AF_0528 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AF_0528 PF00175 Oxidoreductase NAD-binding domain AF_0528 PF00970 Oxidoreductase FAD-binding domain AF_0530 PF01751 Toprim domain AF_0530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_0530 PF00986 DNA gyrase B subunit, carboxyl terminus AF_0530 PF00204 DNA gyrase B AF_0531 PF00899 ThiF family AF_0532 PF12706 Beta-lactamase superfamily domain AF_0532 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AF_0532 PF17770 Ribonuclease J C-terminal domain AF_0535 PF00091 Tubulin/FtsZ family, GTPase domain AF_0535 PF12327 FtsZ family, C-terminal domain AF_0538 PF03946 Ribosomal protein L11, N-terminal domain AF_0538 PF00298 Ribosomal protein L11, RNA binding domain AF_0544 PF02754 Cysteine-rich domain AF_0547 PF02754 Cysteine-rich domain AF_0548 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AF_0548 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AF_0548 PF02824 TGS domain AF_0548 PF03129 Anticodon binding domain AF_0550 PF01979 Amidohydrolase family AF_0551 PF00291 Pyridoxal-phosphate dependent enzyme AF_0552 PF02597 ThiS family AF_0553 PF00899 ThiF family AF_0556 PF11823 Protein of unknown function (DUF3343) AF_0556 PF01206 Sulfurtransferase TusA AF_0557 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_0564 PF00266 Aminotransferase class-V AF_0565 PF01592 NifU-like N terminal domain AF_0568 PF13193 AMP-binding enzyme C-terminal domain AF_0568 PF00501 AMP-binding enzyme AF_0570 PF00091 Tubulin/FtsZ family, GTPase domain AF_0570 PF12327 FtsZ family, C-terminal domain AF_0575 PF00753 Metallo-beta-lactamase superfamily AF_0580 PF03372 Endonuclease/Exonuclease/phosphatase family AF_0581 PF00535 Glycosyl transferase family 2 AF_0584 PF01037 Lrp/AsnC ligand binding domain AF_0588 PF01702 Queuine tRNA-ribosyltransferase AF_0589 PF14572 Phosphoribosyl synthetase-associated domain AF_0589 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AF_0590 PF01634 ATP phosphoribosyltransferase AF_0590 PF08029 HisG, C-terminal domain AF_0592 PF00009 Elongation factor Tu GTP binding domain AF_0592 PF03143 Elongation factor Tu C-terminal domain AF_0592 PF03144 Elongation factor Tu domain 2 AF_0596 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AF_0596 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AF_0596 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AF_0606 PF00534 Glycosyl transferases group 1 AF_0606 PF13439 Glycosyltransferase Family 4 AF_0607 PF00534 Glycosyl transferases group 1 AF_0617 PF00534 Glycosyl transferases group 1 AF_0617 PF13439 Glycosyltransferase Family 4 AF_0621 PF01351 Ribonuclease HII AF_0622 PF02881 SRP54-type protein, helical bundle domain AF_0622 PF00448 SRP54-type protein, GTPase domain AF_0622 PF02978 Signal peptide binding domain AF_0623 PF04679 ATP dependent DNA ligase C terminal region AF_0623 PF04675 DNA ligase N terminus AF_0623 PF01068 ATP dependent DNA ligase domain AF_0628 PF00180 Isocitrate/isopropylmalate dehydrogenase AF_0629 PF00694 Aconitase C-terminal domain AF_0632 PF01106 NifU-like domain AF_0633 PF08264 Anticodon-binding domain of tRNA AF_0633 PF00133 tRNA synthetases class I (I, L, M and V) AF_0634 PF01113 Dihydrodipicolinate reductase, N-terminus AF_0635 PF16868 NMT1-like family AF_0638 PF00005 ABC transporter AF_0639 PF00528 Binding-protein-dependent transport system inner membrane component AF_0640 PF00005 ABC transporter AF_0646 PF00491 Arginase family AF_0647 PF00180 Isocitrate/isopropylmalate dehydrogenase AF_0654 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_0654 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding AF_0654 PF10518 TAT (twin-arginine translocation) pathway signal sequence AF_0655 PF01523 Putative modulator of DNA gyrase AF_0659 PF00437 Type II/IV secretion system protein AF_0660 PF03819 MazG nucleotide pyrophosphohydrolase domain AF_0662 PF03358 NADPH-dependent FMN reductase AF_0662 PF04205 FMN-binding domain AF_0662 PF00890 FAD binding domain AF_0663 PF01593 Flavin containing amine oxidoreductase AF_0665 PF03793 PASTA domain AF_0665 PF00069 Protein kinase domain AF_0666 PF02001 Protein of unknown function DUF134 AF_0670 PF01264 Chorismate synthase AF_0671 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_0671 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_0671 PF02770 Acyl-CoA dehydrogenase, middle domain AF_0672 PF13193 AMP-binding enzyme C-terminal domain AF_0672 PF00501 AMP-binding enzyme AF_0673 PF09278 MerR, DNA binding AF_0673 PF00376 MerR family regulatory protein AF_0676 PF05191 Adenylate kinase, active site lid AF_0677 PF16177 Acetyl-coenzyme A synthetase N-terminus AF_0677 PF00501 AMP-binding enzyme AF_0677 PF13193 AMP-binding enzyme C-terminal domain AF_0679 PF13358 DDE superfamily endonuclease AF_0680 PF00005 ABC transporter AF_0681 PF02910 Fumarate reductase flavoprotein C-term AF_0681 PF00890 FAD binding domain AF_0682 PF13183 4Fe-4S dicluster domain AF_0682 PF13085 2Fe-2S iron-sulfur cluster binding domain AF_0685 PF00378 Enoyl-CoA hydratase/isomerase AF_0687 PF13193 AMP-binding enzyme C-terminal domain AF_0687 PF00501 AMP-binding enzyme AF_0690 PF00850 Histone deacetylase domain AF_0691 PF00970 Oxidoreductase FAD-binding domain AF_0691 PF00111 2Fe-2S iron-sulfur cluster binding domain AF_0691 PF00175 Oxidoreductase NAD-binding domain AF_0696 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AF_0699 PF01411 tRNA synthetases class II (A) AF_0699 PF02272 DHHA1 domain AF_0699 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AF_0700 PF00696 Amino acid kinase family AF_0700 PF01842 ACT domain AF_0700 PF13840 ACT domain AF_0700 PF00742 Homoserine dehydrogenase AF_0700 PF03447 Homoserine dehydrogenase, NAD binding domain AF_0707 PF01255 Putative undecaprenyl diphosphate synthase AF_0710 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AF_0710 PF00391 PEP-utilising enzyme, mobile domain AF_0710 PF02896 PEP-utilising enzyme, TIM barrel domain AF_0713 PF00977 Histidine biosynthesis protein AF_0724 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AF_0726 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AF_0728 PF01891 Cobalt uptake substrate-specific transmembrane region AF_0731 PF00005 ABC transporter AF_0733 PF00586 AIR synthase related protein, N-terminal domain AF_0733 PF02769 AIR synthase related protein, C-terminal domain AF_0737 PF02597 ThiS family AF_0741 PF01894 Uncharacterised protein family UPF0047 AF_0743 PF08753 NikR C terminal nickel binding domain AF_0743 PF01402 Ribbon-helix-helix protein, copG family AF_0744 PF00009 Elongation factor Tu GTP binding domain AF_0744 PF03144 Elongation factor Tu domain 2 AF_0744 PF03143 Elongation factor Tu C-terminal domain AF_0745 PF01180 Dihydroorotate dehydrogenase AF_0747 PF01678 Diaminopimelate epimerase AF_0750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF_0755 PF02754 Cysteine-rich domain AF_0755 PF13183 4Fe-4S dicluster domain AF_0755 PF02665 Nitrate reductase gamma subunit AF_0756 PF02833 DHHA2 domain AF_0756 PF01368 DHH family AF_0767 PF00334 Nucleoside diphosphate kinase AF_0770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_0770 PF00512 His Kinase A (phospho-acceptor) domain AF_0770 PF13188 PAS domain AF_0770 PF13426 PAS domain AF_0770 PF00989 PAS fold AF_0776 PF00579 tRNA synthetases class I (W and Y) AF_0781 PF01300 Telomere recombination AF_0781 PF03481 Putative GTP-binding controlling metal-binding AF_0784 PF02416 mttA/Hcf106 family AF_0786 PF01544 CorA-like Mg2+ transporter protein AF_0788 PF00892 EamA-like transporter family AF_0797 PF04055 Radical SAM superfamily AF_0798 PF04055 Radical SAM superfamily AF_0800 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AF_0800 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AF_0806 PF02652 L-lactate permease AF_0807 PF01070 FMN-dependent dehydrogenase AF_0808 PF02913 FAD linked oxidases, C-terminal domain AF_0808 PF01565 FAD binding domain AF_0811 PF13183 4Fe-4S dicluster domain AF_0811 PF11870 Domain of unknown function (DUF3390) AF_0811 PF02589 LUD domain AF_0813 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AF_0813 PF01842 ACT domain AF_0813 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AF_0814 PF03266 NTPase AF_0815 PF02005 N2,N2-dimethylguanosine tRNA methyltransferase AF_0818 PF00708 Acylphosphatase AF_0819 PF00977 Histidine biosynthesis protein AF_0822 PF00005 ABC transporter AF_0823 PF12399 Branched-chain amino acid ATP-binding cassette transporter AF_0823 PF00005 ABC transporter AF_0825 PF02653 Branched-chain amino acid transport system / permease component AF_0827 PF13458 Periplasmic binding protein AF_0830 PF00301 Rubredoxin AF_0830 PF01613 Flavin reductase like domain AF_0831 PF02915 Rubrerythrin AF_0832 PF02915 Rubrerythrin AF_0833 PF01880 Desulfoferrodoxin AF_0833 PF06397 Desulfoferrodoxin, N-terminal domain AF_0834 PF00210 Ferritin-like domain AF_0838 PF02080 TrkA-C domain AF_0838 PF02254 TrkA-N domain AF_0839 PF02386 Cation transport protein AF_0840 PF00501 AMP-binding enzyme AF_0840 PF13193 AMP-binding enzyme C-terminal domain AF_0841 PF00709 Adenylosuccinate synthetase AF_0845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_0845 PF02770 Acyl-CoA dehydrogenase, middle domain AF_0845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_0846 PF00999 Sodium/hydrogen exchanger family AF_0847 PF00571 CBS domain AF_0847 PF00005 ABC transporter AF_0848 PF00571 CBS domain AF_0851 PF03853 YjeF-related protein N-terminus AF_0852 PF00464 Serine hydroxymethyltransferase AF_0853 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AF_0853 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AF_0853 PF01189 16S rRNA methyltransferase RsmB/F AF_0855 PF00056 lactate/malate dehydrogenase, NAD binding domain AF_0855 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AF_0861 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AF_0862 PF01139 tRNA-splicing ligase RtcB AF_0865 PF00561 alpha/beta hydrolase fold AF_0866 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AF_0866 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AF_0868 PF02913 FAD linked oxidases, C-terminal domain AF_0868 PF01565 FAD binding domain AF_0869 PF01906 Putative heavy-metal-binding AF_0871 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AF_0871 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AF_0873 PF00156 Phosphoribosyl transferase domain AF_0876 PF02872 5'-nucleotidase, C-terminal domain AF_0876 PF00746 LPXTG cell wall anchor motif AF_0876 PF00149 Calcineurin-like phosphoesterase AF_0876 PF00565 Staphylococcal nuclease homologue AF_0879 PF02926 THUMP domain AF_0879 PF02568 Thiamine biosynthesis protein (ThiI) AF_0880 PF00301 Rubredoxin AF_0882 PF17763 Glutaminase/Asparaginase C-terminal domain AF_0882 PF00710 Asparaginase, N-terminal AF_0885 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AF_0885 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AF_0886 PF05221 S-adenosyl-L-homocysteine hydrolase AF_0886 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AF_0890 PF02608 ABC transporter substrate-binding protein PnrA-like AF_0893 PF00989 PAS fold AF_0893 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_0893 PF17203 Single cache domain 3 AF_0893 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AF_0894 PF03485 Arginyl tRNA synthetase N terminal domain AF_0894 PF00750 tRNA synthetases class I (R) AF_0894 PF05746 DALR anticodon binding domain AF_0901 PF01931 Protein of unknown function DUF84 AF_0904 PF07687 Peptidase dimerisation domain AF_0904 PF01546 Peptidase family M20/M25/M40 AF_0907 PF07690 Major Facilitator Superfamily AF_0909 PF05173 Dihydrodipicolinate reductase, C-terminus AF_0909 PF01113 Dihydrodipicolinate reductase, N-terminus AF_0910 PF00701 Dihydrodipicolinate synthetase family AF_0914 PF01253 Translation initiation factor SUI1 AF_0916 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AF_0916 PF03129 Anticodon binding domain AF_0920 PF00152 tRNA synthetases class II (D, K and N) AF_0920 PF01336 OB-fold nucleic acid binding domain AF_0926 PF03061 Thioesterase superfamily AF_0928 PF13419 Haloacid dehalogenase-like hydrolase AF_0929 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AF_0930 PF00994 Probable molybdopterin binding domain AF_0930 PF03454 MoeA C-terminal region (domain IV) AF_0930 PF03453 MoeA N-terminal region (domain I and II) AF_0931 PF03454 MoeA C-terminal region (domain IV) AF_0931 PF00994 Probable molybdopterin binding domain AF_0931 PF03453 MoeA N-terminal region (domain I and II) AF_0932 PF13380 CoA binding domain AF_0932 PF00583 Acetyltransferase (GNAT) family AF_0932 PF13607 Succinyl-CoA ligase like flavodoxin domain AF_0933 PF01063 Amino-transferase class IV AF_0935 PF03447 Homoserine dehydrogenase, NAD binding domain AF_0935 PF00742 Homoserine dehydrogenase AF_0935 PF01842 ACT domain AF_0937 PF00009 Elongation factor Tu GTP binding domain AF_0937 PF03144 Elongation factor Tu domain 2 AF_0937 PF03143 Elongation factor Tu C-terminal domain AF_0938 PF00338 Ribosomal protein S10p/S20e AF_0939 PF12706 Beta-lactamase superfamily domain AF_0942 PF01975 Survival protein SurE AF_0943 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AF_0949 PF03951 Glutamine synthetase, beta-Grasp domain AF_0949 PF00120 Glutamine synthetase, catalytic domain AF_0950 PF12800 4Fe-4S binding domain AF_0950 PF13247 4Fe-4S dicluster domain AF_0951 PF18267 Rubredoxin NAD+ reductase C-terminal domain AF_0951 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AF_0951 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AF_0951 PF04324 BFD-like [2Fe-2S] binding domain AF_0951 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_0952 PF00310 Glutamine amidotransferases class-II AF_0953 PF01645 Conserved region in glutamate synthase AF_0953 PF13187 4Fe-4S dicluster domain AF_0957 PF00682 HMGL-like AF_0957 PF08502 LeuA allosteric (dimerisation) domain AF_0958 PF00005 ABC transporter AF_0959 PF12399 Branched-chain amino acid ATP-binding cassette transporter AF_0959 PF00005 ABC transporter AF_0960 PF02653 Branched-chain amino acid transport system / permease component AF_0960 PF11862 Domain of unknown function (DUF3382) AF_0963 PF00378 Enoyl-CoA hydratase/isomerase AF_0964 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_0964 PF02770 Acyl-CoA dehydrogenase, middle domain AF_0964 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_0969 PF00474 Sodium:solute symporter family AF_0972 PF00929 Exonuclease AF_0973 PF02515 CoA-transferase family III AF_0974 PF02515 CoA-transferase family III AF_0975 PF13193 AMP-binding enzyme C-terminal domain AF_0975 PF00501 AMP-binding enzyme AF_0975 PF16177 Acetyl-coenzyme A synthetase N-terminus AF_0976 PF00501 AMP-binding enzyme AF_0976 PF13193 AMP-binding enzyme C-terminal domain AF_0977 PF00909 Ammonium Transporter Family AF_0978 PF00543 Nitrogen regulatory protein P-II AF_0979 PF00528 Binding-protein-dependent transport system inner membrane component AF_0980 PF00528 Binding-protein-dependent transport system inner membrane component AF_0981 PF00571 CBS domain AF_0981 PF00005 ABC transporter AF_0982 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AF_0984 PF00005 ABC transporter AF_0985 PF00475 Imidazoleglycerol-phosphate dehydratase AF_0986 PF00977 Histidine biosynthesis protein AF_0990 PF02515 CoA-transferase family III AF_0991 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_0991 PF02770 Acyl-CoA dehydrogenase, middle domain AF_0991 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_0994 PF01966 HD domain AF_0996 PF00437 Type II/IV secretion system protein AF_0997 PF01979 Amidohydrolase family AF_1000 PF02540 NAD synthase AF_1006 PF00005 ABC transporter AF_1009 PF11495 Archaeal transcriptional regulator TrmB AF_1009 PF01978 Sugar-specific transcriptional regulator TrmB AF_1014 PF00920 Dehydratase family AF_1017 PF12704 MacB-like periplasmic core domain AF_1017 PF02687 FtsX-like permease family AF_1018 PF00005 ABC transporter AF_1021 PF00005 ABC transporter AF_1022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AF_1022 PF03459 TOBE domain AF_1024 PF00270 DEAD/DEAH box helicase AF_1024 PF01751 Toprim domain AF_1024 PF17915 Reverse gyrase zinc finger AF_1024 PF01131 DNA topoisomerase AF_1025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF_1025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF_1026 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_1026 PF02770 Acyl-CoA dehydrogenase, middle domain AF_1026 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_1027 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AF_1027 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AF_1028 PF02803 Thiolase, C-terminal domain AF_1028 PF00108 Thiolase, N-terminal domain AF_1029 PF00501 AMP-binding enzyme AF_1029 PF13193 AMP-binding enzyme C-terminal domain AF_1030 PF01935 Helicase HerA, central domain AF_1030 PF09378 HAS barrel domain AF_1034 PF00672 HAMP domain AF_1034 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF_1034 PF17202 Single cache domain 3 AF_1037 PF01739 CheR methyltransferase, SAM binding domain AF_1037 PF03705 CheR methyltransferase, all-alpha domain AF_1038 PF03975 CheD chemotactic sensory transduction AF_1039 PF04509 CheC-like family AF_1040 PF02895 Signal transducing histidine kinase, homodimeric domain AF_1040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_1040 PF01584 CheW-like domain AF_1040 PF07194 P2 response regulator binding domain AF_1040 PF01627 Hpt domain AF_1041 PF01339 CheB methylesterase AF_1041 PF00072 Response regulator receiver domain AF_1042 PF00072 Response regulator receiver domain AF_1044 PF01584 CheW-like domain AF_1045 PF17202 Single cache domain 3 AF_1045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AF_1045 PF00672 HAMP domain AF_1049 PF00437 Type II/IV secretion system protein AF_1063 PF00072 Response regulator receiver domain AF_1064 PF00005 ABC transporter AF_1066 PF00296 Luciferase-like monooxygenase AF_1069 PF00474 Sodium:solute symporter family AF_1070 PF14535 AMP-binding enzyme C-terminal domain AF_1070 PF00501 AMP-binding enzyme AF_1072 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system AF_1097 PF00483 Nucleotidyl transferase AF_1097 PF01050 Mannose-6-phosphate isomerase AF_1098 PF05683 Fumarase C-terminus AF_1098 PF05681 Fumarate hydratase (Fumerase) AF_1107 PF02577 Bifunctional nuclease AF_1112 PF00814 Glycoprotease family AF_1117 PF03725 3' exoribonuclease family, domain 2 AF_1117 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AF_1117 PF00013 KH domain AF_1117 PF00575 S1 RNA binding domain AF_1117 PF01138 3' exoribonuclease family, domain 1 AF_1122 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF_1122 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF_1125 PF13186 Iron-sulfur cluster-binding domain AF_1125 PF04055 Radical SAM superfamily AF_1128 PF00572 Ribosomal protein L13 AF_1129 PF00380 Ribosomal protein S9/S16 AF_1132 PF03952 Enolase, N-terminal domain AF_1132 PF00113 Enolase, C-terminal TIM barrel domain AF_1133 PF00318 Ribosomal protein S2 AF_1136 PF00005 ABC transporter AF_1139 PF00005 ABC transporter AF_1142 PF00483 Nucleotidyl transferase AF_1144 PF07690 Major Facilitator Superfamily AF_1145 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AF_1145 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AF_1146 PF00162 Phosphoglycerate kinase AF_1147 PF01960 ArgJ family AF_1148 PF01037 Lrp/AsnC ligand binding domain AF_1149 PF08494 DEAD/H associated AF_1149 PF00271 Helicase conserved C-terminal domain AF_1149 PF00270 DEAD/DEAH box helicase AF_1157 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AF_1157 PF02843 Phosphoribosylglycinamide synthetase, C domain AF_1157 PF02844 Phosphoribosylglycinamide synthetase, N domain AF_1159 PF01496 V-type ATPase 116kDa subunit family AF_1164 PF01992 ATP synthase (C/AC39) subunit AF_1166 PF16886 ATPsynthase alpha/beta subunit N-term extension AF_1166 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AF_1166 PF02874 ATP synthase alpha/beta family, beta-barrel domain AF_1167 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AF_1167 PF02874 ATP synthase alpha/beta family, beta-barrel domain AF_1168 PF01813 ATP synthase subunit D AF_1169 PF02632 BioY family AF_1170 PF12558 ATP-binding cassette cobalt transporter AF_1170 PF00005 ABC transporter AF_1175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_1175 PF02770 Acyl-CoA dehydrogenase, middle domain AF_1175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_1177 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF_1177 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF_1184 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_1184 PF00989 PAS fold AF_1184 PF00512 His Kinase A (phospho-acceptor) domain AF_1186 PF00571 CBS domain AF_1186 PF00478 IMP dehydrogenase / GMP reductase domain AF_1190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF_1190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF_1191 PF00378 Enoyl-CoA hydratase/isomerase AF_1192 PF13607 Succinyl-CoA ligase like flavodoxin domain AF_1192 PF13380 CoA binding domain AF_1192 PF00583 Acetyltransferase (GNAT) family AF_1195 PF05496 Holliday junction DNA helicase RuvB P-loop domain AF_1195 PF12002 MgsA AAA+ ATPase C terminal AF_1195 PF16193 AAA C-terminal domain AF_1196 PF00296 Luciferase-like monooxygenase AF_1197 PF00108 Thiolase, N-terminal domain AF_1197 PF02803 Thiolase, C-terminal domain AF_1199 PF01144 Coenzyme A transferase AF_1202 PF12800 4Fe-4S binding domain AF_1202 PF13247 4Fe-4S dicluster domain AF_1203 PF01568 Molydopterin dinucleotide binding domain AF_1203 PF00384 Molybdopterin oxidoreductase AF_1206 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF_1206 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF_1210 PF05853 beta-keto acid cleavage enzyme AF_1211 PF13607 Succinyl-CoA ligase like flavodoxin domain AF_1211 PF13380 CoA binding domain AF_1211 PF00583 Acetyltransferase (GNAT) family AF_1212 PF07085 DRTGG domain AF_1214 PF02441 Flavoprotein AF_1215 PF12327 FtsZ family, C-terminal domain AF_1215 PF00091 Tubulin/FtsZ family, GTPase domain AF_1216 PF01921 tRNA synthetases class I (K) AF_1219 PF01255 Putative undecaprenyl diphosphate synthase AF_1222 PF00474 Sodium:solute symporter family AF_1224 PF00013 KH domain AF_1224 PF12072 Domain of unknown function (DUF3552) AF_1224 PF01966 HD domain AF_1229 PF12823 Domain of unknown function (DUF3817) AF_1229 PF03176 MMPL family AF_1232 PF01978 Sugar-specific transcriptional regulator TrmB AF_1232 PF11495 Archaeal transcriptional regulator TrmB AF_1234 PF13344 Haloacid dehalogenase-like hydrolase AF_1234 PF00293 NUDIX domain AF_1238 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AF_1238 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_1240 PF00291 Pyridoxal-phosphate dependent enzyme AF_1241 PF00202 Aminotransferase class-III AF_1242 PF03900 Porphobilinogen deaminase, C-terminal domain AF_1242 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AF_1243 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AF_1245 PF00999 Sodium/hydrogen exchanger family AF_1247 PF01938 TRAM domain AF_1247 PF04055 Radical SAM superfamily AF_1247 PF00919 Uncharacterized protein family UPF0004 AF_1248 PF04474 Protein of unknown function (DUF554) AF_1252 PF00682 HMGL-like AF_1252 PF00364 Biotin-requiring enzyme AF_1252 PF02436 Conserved carboxylase domain AF_1255 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AF_1255 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AF_1256 PF00072 Response regulator receiver domain AF_1256 PF01339 CheB methylesterase AF_1257 PF01170 Putative RNA methylase family UPF0020 AF_1257 PF02926 THUMP domain AF_1259 PF00005 ABC transporter AF_1259 PF00571 CBS domain AF_1261 PF13193 AMP-binding enzyme C-terminal domain AF_1261 PF00501 AMP-binding enzyme AF_1262 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_1262 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AF_1271 PF00731 AIR carboxylase AF_1272 PF01259 SAICAR synthetase AF_1273 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AF_1273 PF00117 Glutamine amidotransferase class-I AF_1274 PF02142 MGS-like domain AF_1274 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AF_1274 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AF_1275 PF00731 AIR carboxylase AF_1277 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AF_1277 PF00117 Glutamine amidotransferase class-I AF_1280 PF00696 Amino acid kinase family AF_1281 PF01965 DJ-1/PfpI family AF_1284 PF00085 Thioredoxin AF_1285 PF17862 AAA+ lid domain AF_1285 PF01434 Peptidase family M41 AF_1285 PF00004 ATPase family associated with various cellular activities (AAA) AF_1286 PF00850 Histone deacetylase domain AF_1287 PF00501 AMP-binding enzyme AF_1287 PF13193 AMP-binding enzyme C-terminal domain AF_1291 PF00108 Thiolase, N-terminal domain AF_1291 PF02803 Thiolase, C-terminal domain AF_1293 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_1293 PF02770 Acyl-CoA dehydrogenase, middle domain AF_1293 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_1296 PF00011 Hsp20/alpha crystallin family AF_1297 PF00004 ATPase family associated with various cellular activities (AAA) AF_1297 PF01434 Peptidase family M41 AF_1297 PF17862 AAA+ lid domain AF_1300 PF00005 ABC transporter AF_1304 PF00121 Triosephosphate isomerase AF_1305 PF08714 Formaldehyde-activating enzyme (Fae) AF_1308 PF02223 Thymidylate kinase AF_1311 PF04055 Radical SAM superfamily AF_1311 PF06969 HemN C-terminal domain AF_1315 PF02515 CoA-transferase family III AF_1316 PF00291 Pyridoxal-phosphate dependent enzyme AF_1320 PF02540 NAD synthase AF_1320 PF00117 Glutamine amidotransferase class-I AF_1320 PF00958 GMP synthase C terminal domain AF_1321 PF01171 PP-loop family AF_1324 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AF_1324 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AF_1326 PF01926 50S ribosome-binding GTPase AF_1328 PF01266 FAD dependent oxidoreductase AF_1336 PF03186 CobD/Cbib protein AF_1338 PF07685 CobB/CobQ-like glutamine amidotransferase domain AF_1339 PF00252 Ribosomal protein L16p/L10e AF_1340 PF00285 Citrate synthase, C-terminal domain AF_1341 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AF_1341 PF00591 Glycosyl transferase family, a/b domain AF_1341 PF02885 Glycosyl transferase family, helical bundle domain AF_1342 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AF_1342 PF00591 Glycosyl transferase family, a/b domain AF_1342 PF02885 Glycosyl transferase family, helical bundle domain AF_1343 PF16123 Hydroxyacylglutathione hydrolase C-terminus AF_1343 PF00753 Metallo-beta-lactamase superfamily AF_1344 PF00902 Sec-independent protein translocase protein (TatC) AF_1349 PF00301 Rubredoxin AF_1350 PF00753 Metallo-beta-lactamase superfamily AF_1350 PF16123 Hydroxyacylglutathione hydrolase C-terminus AF_1352 PF13358 DDE superfamily endonuclease AF_1354 PF06965 Na+/H+ antiporter 1 AF_1354 PF13462 Thioredoxin AF_1356 PF12849 PBP superfamily domain AF_1357 PF00528 Binding-protein-dependent transport system inner membrane component AF_1358 PF00528 Binding-protein-dependent transport system inner membrane component AF_1359 PF00005 ABC transporter AF_1360 PF01895 PhoU domain AF_1364 PF09269 Domain of unknown function (DUF1967) AF_1364 PF01926 50S ribosome-binding GTPase AF_1364 PF01018 GTP1/OBG AF_1365 PF00586 AIR synthase related protein, N-terminal domain AF_1365 PF02769 AIR synthase related protein, C-terminal domain AF_1366 PF01300 Telomere recombination AF_1366 PF00708 Acylphosphatase AF_1366 PF07503 HypF finger AF_1366 PF17788 HypF Kae1-like domain AF_1367 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AF_1368 PF02492 CobW/HypB/UreG, nucleotide-binding domain AF_1369 PF01455 HupF/HypC family AF_1370 PF01924 Hydrogenase formation hypA family AF_1372 PF00374 Nickel-dependent hydrogenase AF_1373 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AF_1378 PF01750 Hydrogenase maturation protease AF_1380 PF00374 Nickel-dependent hydrogenase AF_1381 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AF_1381 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AF_1384 PF00072 Response regulator receiver domain AF_1389 PF00005 ABC transporter AF_1390 PF00005 ABC transporter AF_1390 PF12399 Branched-chain amino acid ATP-binding cassette transporter AF_1398 PF13243 Squalene-hopene cyclase C-terminal domain AF_1398 PF13249 Squalene-hopene cyclase N-terminal domain AF_1399 PF13360 PQQ-like domain AF_1401 PF00005 ABC transporter AF_1402 PF01032 FecCD transport family AF_1409 PF01555 DNA methylase AF_1414 PF14251 Domain of unknown function (DUF4346) AF_1415 PF00654 Voltage gated chloride channel AF_1417 PF00266 Aminotransferase class-V AF_1418 PF00294 pfkB family carbohydrate kinase AF_1418 PF01467 Cytidylyltransferase-like AF_1419 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AF_1419 PF14572 Phosphoribosyl synthetase-associated domain AF_1420 PF16200 C-terminal region of band_7 AF_1420 PF01145 SPFH domain / Band 7 family AF_1421 PF03699 Uncharacterised protein family (UPF0182) AF_1422 PF01177 Asp/Glu/Hydantoin racemase AF_1423 PF01966 HD domain AF_1424 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AF_1424 PF03484 tRNA synthetase B5 domain AF_1425 PF01676 Metalloenzyme superfamily AF_1425 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase AF_1426 PF00230 Major intrinsic protein AF_1433 PF01949 Protein of unknown function DUF99 AF_1435 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain AF_1435 PF01137 RNA 3'-terminal phosphate cyclase AF_1440 PF02934 GatB/GatE catalytic domain AF_1440 PF02637 GatB domain AF_1442 PF01950 Fructose-1,6-bisphosphatase AF_1443 PF06745 KaiC AF_1448 PF01037 Lrp/AsnC ligand binding domain AF_1450 PF04055 Radical SAM superfamily AF_1452 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_1452 PF00512 His Kinase A (phospho-acceptor) domain AF_1453 PF09334 tRNA synthetases class I (M) AF_1453 PF01588 Putative tRNA binding domain AF_1458 PF00270 DEAD/DEAH box helicase AF_1458 PF03461 TRCF domain AF_1458 PF00271 Helicase conserved C-terminal domain AF_1458 PF02559 CarD-like/TRCF domain AF_1458 PF17757 UvrB interaction domain AF_1463 PF00890 FAD binding domain AF_1469 PF00005 ABC transporter AF_1470 PF00005 ABC transporter AF_1470 PF12704 MacB-like periplasmic core domain AF_1470 PF02687 FtsX-like permease family AF_1472 PF00158 Sigma-54 interaction domain AF_1472 PF00072 Response regulator receiver domain AF_1472 PF02954 Bacterial regulatory protein, Fis family AF_1473 PF00072 Response regulator receiver domain AF_1475 PF03073 TspO/MBR family AF_1476 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AF_1483 PF17149 Periplasmic sensor domain found in signal transduction proteins AF_1483 PF00672 HAMP domain AF_1483 PF00072 Response regulator receiver domain AF_1483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_1483 PF00512 His Kinase A (phospho-acceptor) domain AF_1483 PF01627 Hpt domain AF_1484 PF06745 KaiC AF_1485 PF01702 Queuine tRNA-ribosyltransferase AF_1486 PF14010 Phosphoenolpyruvate carboxylase AF_1488 PF00293 NUDIX domain AF_1488 PF01467 Cytidylyltransferase-like AF_1490 PF00687 Ribosomal protein L1p/L10e family AF_1491 PF00466 Ribosomal protein L10 AF_1497 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AF_1506 PF01118 Semialdehyde dehydrogenase, NAD binding domain AF_1506 PF02774 Semialdehyde dehydrogenase, dimerisation domain AF_1509 PF00753 Metallo-beta-lactamase superfamily AF_1510 PF13193 AMP-binding enzyme C-terminal domain AF_1510 PF00501 AMP-binding enzyme AF_1511 PF02629 CoA binding domain AF_1511 PF00549 CoA-ligase AF_1512 PF00902 Sec-independent protein translocase protein (TatC) AF_1515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_1515 PF00512 His Kinase A (phospho-acceptor) domain AF_1516 PF03749 Sugar fermentation stimulation protein RE domain AF_1516 PF17746 SfsA N-terminal OB domain AF_1518 PF02441 Flavoprotein AF_1520 PF00258 Flavodoxin AF_1520 PF00753 Metallo-beta-lactamase superfamily AF_1521 PF01661 Macro domain AF_1522 PF08351 Domain of unknown function (DUF1726) AF_1522 PF17176 tRNA-binding domain AF_1522 PF05127 Helicase AF_1522 PF13718 GNAT acetyltransferase 2 AF_1537 PF12697 Alpha/beta hydrolase family AF_1538 PF02667 Short chain fatty acid transporter AF_1539 PF00549 CoA-ligase AF_1539 PF02629 CoA binding domain AF_1540 PF00549 CoA-ligase AF_1540 PF08442 ATP-grasp domain AF_1541 PF07690 Major Facilitator Superfamily AF_1542 PF03551 Transcriptional regulator PadR-like family AF_1546 PF00924 Mechanosensitive ion channel AF_1546 PF05552 Conserved TM helix AF_1551 PF00348 Polyprenyl synthetase AF_1553 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AF_1554 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_1558 PF06470 SMC proteins Flexible Hinge Domain AF_1558 PF02463 RecF/RecN/SMC N terminal domain AF_1563 PF12146 Serine aminopeptidase, S33 AF_1580 PF04079 Segregation and condensation complex subunit ScpB AF_1587 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AF_1587 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AF_1595 PF01171 PP-loop family AF_1599 PF00290 Tryptophan synthase alpha chain AF_1600 PF00291 Pyridoxal-phosphate dependent enzyme AF_1601 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AF_1602 PF00591 Glycosyl transferase family, a/b domain AF_1602 PF02885 Glycosyl transferase family, helical bundle domain AF_1602 PF00117 Glutamine amidotransferase class-I AF_1603 PF04715 Anthranilate synthase component I, N terminal region AF_1603 PF00425 chorismate binding enzyme AF_1604 PF00591 Glycosyl transferase family, a/b domain AF_1604 PF02885 Glycosyl transferase family, helical bundle domain AF_1606 PF00528 Binding-protein-dependent transport system inner membrane component AF_1607 PF00528 Binding-protein-dependent transport system inner membrane component AF_1608 PF00005 ABC transporter AF_1608 PF08402 TOBE domain AF_1610 PF02675 S-adenosylmethionine decarboxylase AF_1611 PF01861 Branched-chain polyamine synthase A C-terminal domain AF_1612 PF00324 Amino acid permease AF_1615 PF06463 Molybdenum Cofactor Synthesis C AF_1615 PF04055 Radical SAM superfamily AF_1618 PF03601 Conserved hypothetical protein 698 AF_1619 PF03601 Conserved hypothetical protein 698 AF_1621 PF03601 Conserved hypothetical protein 698 AF_1622 PF01037 Lrp/AsnC ligand binding domain AF_1623 PF00155 Aminotransferase class I and II AF_1624 PF02597 ThiS family AF_1630 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AF_1638 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AF_1638 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AF_1639 PF00989 PAS fold AF_1639 PF00512 His Kinase A (phospho-acceptor) domain AF_1639 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_1639 PF00672 HAMP domain AF_1640 PF02915 Rubrerythrin AF_1641 PF00378 Enoyl-CoA hydratase/isomerase AF_1642 PF13393 Histidyl-tRNA synthetase AF_1642 PF03129 Anticodon binding domain AF_1643 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AF_1645 PF04127 DNA / pantothenate metabolism flavoprotein AF_1645 PF02441 Flavoprotein AF_1652 PF05922 Peptidase inhibitor I9 AF_1652 PF00082 Subtilase family AF_1653 PF00082 Subtilase family AF_1664 PF00317 Ribonucleotide reductase, all-alpha domain AF_1664 PF03477 ATP cone domain AF_1664 PF02867 Ribonucleotide reductase, barrel domain AF_1665 PF02423 Ornithine cyclodeaminase/mu-crystallin family AF_1669 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit AF_1669 PF13187 4Fe-4S dicluster domain AF_1670 PF00890 FAD binding domain AF_1671 PF00501 AMP-binding enzyme AF_1671 PF14535 AMP-binding enzyme C-terminal domain AF_1674 PF13685 Iron-containing alcohol dehydrogenase AF_1676 PF02146 Sir2 family AF_1677 PF01142 tRNA pseudouridine synthase D (TruD) AF_1685 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AF_1692 PF00730 HhH-GPD superfamily base excision DNA repair protein AF_1692 PF00633 Helix-hairpin-helix motif AF_1692 PF10576 Iron-sulfur binding domain of endonuclease III AF_1693 PF02769 AIR synthase related protein, C-terminal domain AF_1693 PF00586 AIR synthase related protein, N-terminal domain AF_1695 PF08546 Ketopantoate reductase PanE/ApbA C terminal AF_1695 PF02558 Ketopantoate reductase PanE/ApbA AF_1698 PF01161 Phosphatidylethanolamine-binding protein AF_1701 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AF_1701 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AF_1702 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF_1704 PF02621 Menaquinone biosynthesis AF_1706 PF12697 Alpha/beta hydrolase family AF_1708 PF18766 SWI2/SNF2 ATPase AF_1708 PF11867 Domain of unknown function (DUF3387) AF_1708 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AF_1710 PF01420 Type I restriction modification DNA specificity domain AF_1716 PF07859 alpha/beta hydrolase fold AF_1717 PF07849 Protein of unknown function (DUF1641) AF_1719 PF10369 Small subunit of acetolactate synthase AF_1720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF_1720 PF00205 Thiamine pyrophosphate enzyme, central domain AF_1720 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AF_1721 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_1721 PF00512 His Kinase A (phospho-acceptor) domain AF_1721 PF00672 HAMP domain AF_1726 PF02735 Ku70/Ku80 beta-barrel domain AF_1727 PF00390 Malic enzyme, N-terminal domain AF_1727 PF03949 Malic enzyme, NAD binding domain AF_1728 PF00534 Glycosyl transferases group 1 AF_1728 PF13439 Glycosyltransferase Family 4 AF_1730 PF01416 tRNA pseudouridine synthase AF_1732 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AF_1732 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AF_1736 PF00368 Hydroxymethylglutaryl-coenzyme A reductase AF_1737 PF03190 Protein of unknown function, DUF255 AF_1741 PF00156 Phosphoribosyl transferase domain AF_1743 PF01047 MarR family AF_1744 PF01066 CDP-alcohol phosphatidyltransferase AF_1746 PF00909 Ammonium Transporter Family AF_1747 PF00543 Nitrogen regulatory protein P-II AF_1748 PF16123 Hydroxyacylglutathione hydrolase C-terminus AF_1748 PF00753 Metallo-beta-lactamase superfamily AF_1749 PF00909 Ammonium Transporter Family AF_1750 PF00543 Nitrogen regulatory protein P-II AF_1751 PF01676 Metalloenzyme superfamily AF_1751 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase AF_1752 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AF_1752 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AF_1755 PF03591 AzlC protein AF_1761 PF00694 Aconitase C-terminal domain AF_1764 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AF_1765 PF01026 TatD related DNase AF_1767 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AF_1768 PF00528 Binding-protein-dependent transport system inner membrane component AF_1770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AF_1770 PF00005 ABC transporter AF_1771 PF00005 ABC transporter AF_1771 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AF_1772 PF00501 AMP-binding enzyme AF_1772 PF13193 AMP-binding enzyme C-terminal domain AF_1773 PF02754 Cysteine-rich domain AF_1773 PF13183 4Fe-4S dicluster domain AF_1774 PF13520 Amino acid permease AF_1777 PF01784 NIF3 (NGG1p interacting factor 3) AF_1778 PF04026 SpoVG AF_1779 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AF_1779 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AF_1780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AF_1780 PF00205 Thiamine pyrophosphate enzyme, central domain AF_1780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF_1783 PF00398 Ribosomal RNA adenine dimethylase AF_1787 PF13464 Domain of unknown function (DUF4115) AF_1788 PF01048 Phosphorylase superfamily AF_1795 PF05343 M42 glutamyl aminopeptidase AF_1796 PF01380 SIS domain AF_1797 PF01895 PhoU domain AF_1798 PF01384 Phosphate transporter family AF_1801 PF00588 SpoU rRNA Methylase family AF_1806 PF01396 Topoisomerase DNA binding C4 zinc finger AF_1806 PF01131 DNA topoisomerase AF_1806 PF01751 Toprim domain AF_1810 PF06463 Molybdenum Cofactor Synthesis C AF_1810 PF04055 Radical SAM superfamily AF_1811 PF02142 MGS-like domain AF_1811 PF01808 AICARFT/IMPCHase bienzyme AF_1813 PF01434 Peptidase family M41 AF_1813 PF17862 AAA+ lid domain AF_1813 PF00004 ATPase family associated with various cellular activities (AAA) AF_1815 PF00202 Aminotransferase class-III AF_1817 PF00440 Bacterial regulatory proteins, tetR family AF_1819 PF00005 ABC transporter AF_1825 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AF_1825 PF00361 Proton-conducting membrane transporter AF_1826 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AF_1826 PF00361 Proton-conducting membrane transporter AF_1827 PF00361 Proton-conducting membrane transporter AF_1829 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AF_1830 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AF_1831 PF00146 NADH dehydrogenase AF_1838 PF01958 Domain of unknown function DUF108 AF_1838 PF03447 Homoserine dehydrogenase, NAD binding domain AF_1839 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AF_1839 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AF_1840 PF00557 Metallopeptidase family M24 AF_1841 PF00005 ABC transporter AF_1843 PF01891 Cobalt uptake substrate-specific transmembrane region AF_1843 PF13190 PDGLE domain AF_1849 PF03063 Prismane/CO dehydrogenase family AF_1854 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AF_1854 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AF_1855 PF00501 AMP-binding enzyme AF_1855 PF13193 AMP-binding enzyme C-terminal domain AF_1858 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AF_1858 PF07992 Pyridine nucleotide-disulphide oxidoreductase AF_1876 PF09827 CRISPR associated protein Cas2 AF_1877 PF01930 Domain of unknown function DUF83 AF_1878 PF01867 CRISPR associated protein Cas1 AF_1883 PF01061 ABC-2 type transporter AF_1884 PF00005 ABC transporter AF_1886 PF00562 RNA polymerase Rpb2, domain 6 AF_1886 PF10385 RNA polymerase beta subunit external 1 domain AF_1886 PF04563 RNA polymerase beta subunit AF_1886 PF04565 RNA polymerase Rpb2, domain 3 AF_1886 PF04560 RNA polymerase Rpb2, domain 7 AF_1886 PF04561 RNA polymerase Rpb2, domain 2 AF_1887 PF04560 RNA polymerase Rpb2, domain 7 AF_1887 PF00562 RNA polymerase Rpb2, domain 6 AF_1887 PF10385 RNA polymerase beta subunit external 1 domain AF_1887 PF04565 RNA polymerase Rpb2, domain 3 AF_1887 PF04561 RNA polymerase Rpb2, domain 2 AF_1887 PF04563 RNA polymerase beta subunit AF_1888 PF04997 RNA polymerase Rpb1, domain 1 AF_1888 PF00623 RNA polymerase Rpb1, domain 2 AF_1888 PF04983 RNA polymerase Rpb1, domain 3 AF_1888 PF04998 RNA polymerase Rpb1, domain 5 AF_1888 PF05000 RNA polymerase Rpb1, domain 4 AF_1890 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AF_1891 PF13184 NusA-like KH domain AF_1891 PF00575 S1 RNA binding domain AF_1891 PF08529 NusA N-terminal domain AF_1893 PF00177 Ribosomal protein S7p/S5e AF_1894 PF03764 Elongation factor G, domain IV AF_1894 PF14492 Elongation Factor G, domain II AF_1894 PF00009 Elongation factor Tu GTP binding domain AF_1894 PF00679 Elongation factor G C-terminus AF_1894 PF03144 Elongation factor Tu domain 2 AF_1896 PF03358 NADPH-dependent FMN reductase AF_1898 PF00072 Response regulator receiver domain AF_1899 PF08275 DNA primase catalytic core, N-terminal domain AF_1899 PF01807 CHC2 zinc finger AF_1899 PF13662 Toprim domain AF_1900 PF02224 Cytidylate kinase AF_1902 PF00344 SecY translocase AF_1903 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AF_1905 PF00333 Ribosomal protein S5, N-terminal domain AF_1905 PF03719 Ribosomal protein S5, C-terminal domain AF_1906 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AF_1909 PF00347 Ribosomal protein L6 AF_1910 PF00410 Ribosomal protein S8 AF_1912 PF00673 ribosomal L5P family C-terminus AF_1912 PF00281 Ribosomal protein L5 AF_1914 PF00467 KOW motif AF_1914 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AF_1915 PF00238 Ribosomal protein L14p/L23e AF_1916 PF00366 Ribosomal protein S17 AF_1918 PF00831 Ribosomal L29 protein AF_1919 PF07650 KH domain AF_1919 PF00189 Ribosomal protein S3, C-terminal domain AF_1920 PF00237 Ribosomal protein L22p/L17e AF_1921 PF00203 Ribosomal protein S19 AF_1922 PF00181 Ribosomal Proteins L2, RNA binding domain AF_1922 PF03947 Ribosomal Proteins L2, C-terminal domain AF_1923 PF00276 Ribosomal protein L23 AF_1924 PF00573 Ribosomal protein L4/L1 family AF_1925 PF00297 Ribosomal protein L3 AF_1930 PF07969 Amidohydrolase family AF_1932 PF00501 AMP-binding enzyme AF_1932 PF13193 AMP-binding enzyme C-terminal domain AF_1935 PF02289 Cyclohydrolase (MCH) AF_1938 PF13607 Succinyl-CoA ligase like flavodoxin domain AF_1938 PF13380 CoA binding domain AF_1938 PF00583 Acetyltransferase (GNAT) family AF_1940 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AF_1940 PF02769 AIR synthase related protein, C-terminal domain AF_1940 PF00586 AIR synthase related protein, N-terminal domain AF_1941 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AF_1950 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AF_1950 PF01502 Phosphoribosyl-AMP cyclohydrolase AF_1951 PF01938 TRAM domain AF_1954 PF01425 Amidase AF_1955 PF01409 tRNA synthetases class II core domain (F) AF_1957 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component AF_1958 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component AF_1959 PF01869 BadF/BadG/BcrA/BcrD ATPase family AF_1960 PF00625 Guanylate kinase AF_1963 PF00330 Aconitase family (aconitate hydratase) AF_1968 PF00480 ROK family AF_1968 PF01325 Iron dependent repressor, N-terminal DNA binding domain AF_1969 PF01871 AMMECR1 AF_1971 PF00011 Hsp20/alpha crystallin family AF_1973 PF05958 tRNA (Uracil-5-)-methyltransferase AF_1973 PF01938 TRAM domain AF_1974 PF00490 Delta-aminolevulinic acid dehydratase AF_1975 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AF_1975 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AF_1975 PF01488 Shikimate / quinate 5-dehydrogenase AF_1976 PF06480 FtsH Extracellular AF_1976 PF00004 ATPase family associated with various cellular activities (AAA) AF_1976 PF01434 Peptidase family M41 AF_1976 PF17862 AAA+ lid domain AF_1980 PF01578 Cytochrome C assembly protein AF_1981 PF00950 ABC 3 transport family AF_1982 PF00005 ABC transporter AF_1983 PF01297 Zinc-uptake complex component A periplasmic AF_1985 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AF_1985 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AF_1989 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AF_1995 PF00209 Sodium:neurotransmitter symporter family AF_1998 PF13183 4Fe-4S dicluster domain AF_1998 PF02754 Cysteine-rich domain AF_2000 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AF_2000 PF05221 S-adenosyl-L-homocysteine hydrolase AF_2002 PF00155 Aminotransferase class I and II AF_2004 PF00282 Pyridoxal-dependent decarboxylase conserved domain AF_2005 PF12804 MobA-like NTP transferase domain AF_2006 PF04055 Radical SAM superfamily AF_2006 PF06463 Molybdenum Cofactor Synthesis C AF_2007 PF01872 RibD C-terminal domain AF_2007 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AF_2009 PF04055 Radical SAM superfamily AF_2009 PF13186 Iron-sulfur cluster-binding domain AF_2013 PF00501 AMP-binding enzyme AF_2013 PF14535 AMP-binding enzyme C-terminal domain AF_2014 PF07690 Major Facilitator Superfamily AF_2015 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AF_2015 PF00205 Thiamine pyrophosphate enzyme, central domain AF_2015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF_2017 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF_2017 PF00378 Enoyl-CoA hydratase/isomerase AF_2017 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF_2019 PF00465 Iron-containing alcohol dehydrogenase AF_2032 PF13426 PAS domain AF_2032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_2032 PF00512 His Kinase A (phospho-acceptor) domain AF_2032 PF13188 PAS domain AF_2032 PF00989 PAS fold AF_2033 PF13193 AMP-binding enzyme C-terminal domain AF_2033 PF00501 AMP-binding enzyme AF_2034 PF01321 Creatinase/Prolidase N-terminal domain AF_2034 PF00557 Metallopeptidase family M24 AF_2035 PF02403 Seryl-tRNA synthetase N-terminal domain AF_2035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AF_2036 PF01040 UbiA prenyltransferase family AF_2037 PF01008 Initiation factor 2 subunit family AF_2039 PF01189 16S rRNA methyltransferase RsmB/F AF_2039 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AF_2039 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AF_2042 PF00696 Amino acid kinase family AF_2044 PF01066 CDP-alcohol phosphatidyltransferase AF_2045 PF02666 Phosphatidylserine decarboxylase AF_2047 PF00303 Thymidylate synthase AF_2050 PF01894 Uncharacterised protein family UPF0047 AF_2051 PF01728 FtsJ-like methyltransferase AF_2052 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF_2053 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AF_2053 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AF_2056 PF02416 mttA/Hcf106 family AF_2057 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_2057 PF02770 Acyl-CoA dehydrogenase, middle domain AF_2057 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_2060 PF17866 AAA lid domain AF_2060 PF00004 ATPase family associated with various cellular activities (AAA) AF_2062 PF00448 SRP54-type protein, GTPase domain AF_2062 PF02881 SRP54-type protein, helical bundle domain AF_2071 PF02774 Semialdehyde dehydrogenase, dimerisation domain AF_2071 PF01118 Semialdehyde dehydrogenase, NAD binding domain AF_2073 PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase AF_2073 PF02741 FTR, proximal lobe AF_2074 PF02581 Thiamine monophosphate synthase AF_2075 PF02110 Hydroxyethylthiazole kinase family AF_2084 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AF_2085 PF00364 Biotin-requiring enzyme AF_2085 PF02436 Conserved carboxylase domain AF_2085 PF00682 HMGL-like AF_2089 PF00288 GHMP kinases N terminal domain AF_2089 PF08544 GHMP kinases C terminal AF_2098 PF06480 FtsH Extracellular AF_2098 PF17862 AAA+ lid domain AF_2098 PF01434 Peptidase family M41 AF_2098 PF00004 ATPase family associated with various cellular activities (AAA) AF_2099 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AF_2099 PF13378 Enolase C-terminal domain-like AF_2100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AF_2100 PF00205 Thiamine pyrophosphate enzyme, central domain AF_2100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AF_2101 PF00107 Zinc-binding dehydrogenase AF_2101 PF08240 Alcohol dehydrogenase GroES-like domain AF_2109 PF17203 Single cache domain 3 AF_2109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_2109 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AF_2109 PF00989 PAS fold AF_2111 PF01914 MarC family integral membrane protein AF_2116 PF02637 GatB domain AF_2116 PF02934 GatB/GatE catalytic domain AF_2118 PF00571 CBS domain AF_2118 PF00291 Pyridoxal-phosphate dependent enzyme AF_2127 PF03466 LysR substrate binding domain AF_2127 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AF_2128 PF00885 6,7-dimethyl-8-ribityllumazine synthase AF_2129 PF00155 Aminotransferase class I and II AF_2136 PF01022 Bacterial regulatory protein, arsR family AF_2137 PF01545 Cation efflux family AF_2137 PF16916 Dimerisation domain of Zinc Transporter AF_2139 PF13358 DDE superfamily endonuclease AF_2144 PF00085 Thioredoxin AF_2146 PF01018 GTP1/OBG AF_2146 PF01926 50S ribosome-binding GTPase AF_2148 PF00753 Metallo-beta-lactamase superfamily AF_2148 PF16123 Hydroxyacylglutathione hydrolase C-terminus AF_2150 PF01967 MoaC family AF_2151 PF00857 Isochorismatase family AF_2153 PF12706 Beta-lactamase superfamily domain AF_2155 PF10996 Beta-Casp domain AF_2155 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AF_2155 PF00753 Metallo-beta-lactamase superfamily AF_2157 PF02834 LigT like Phosphoesterase AF_2173 PF03060 Nitronate monooxygenase AF_2178 PF01170 Putative RNA methylase family UPF0020 AF_2178 PF02926 THUMP domain AF_2178 PF10672 S-adenosylmethionine-dependent methyltransferase AF_2179 PF02391 MoaE protein AF_2184 PF01479 S4 domain AF_2184 PF00163 Ribosomal protein S4/S9 N-terminal domain AF_2185 PF02629 CoA binding domain AF_2185 PF00549 CoA-ligase AF_2186 PF08442 ATP-grasp domain AF_2186 PF00549 CoA-ligase AF_2192 PF01578 Cytochrome C assembly protein AF_2192 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AF_2195 PF01916 Deoxyhypusine synthase AF_2196 PF04476 4-HFC-P synthase AF_2199 PF00330 Aconitase family (aconitate hydratase) AF_2200 PF00293 NUDIX domain AF_2207 PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase AF_2207 PF02741 FTR, proximal lobe AF_2208 PF02581 Thiamine monophosphate synthase AF_2208 PF08543 Phosphomethylpyrimidine kinase AF_2208 PF03070 TENA/THI-4/PQQC family AF_2211 PF01230 HIT domain AF_2216 PF02436 Conserved carboxylase domain AF_2216 PF00682 HMGL-like AF_2216 PF00364 Biotin-requiring enzyme AF_2217 PF01039 Carboxyl transferase domain AF_2224 PF00133 tRNA synthetases class I (I, L, M and V) AF_2224 PF08264 Anticodon-binding domain of tRNA AF_2225 PF01557 Fumarylacetoacetate (FAA) hydrolase family AF_2226 PF02568 Thiamine biosynthesis protein (ThiI) AF_2226 PF02926 THUMP domain AF_2228 PF04358 DsrC like protein AF_2229 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AF_2229 PF07685 CobB/CobQ-like glutamine amidotransferase domain AF_2232 PF01475 Ferric uptake regulator family AF_2233 PF00141 Peroxidase AF_2237 PF01725 Ham1 family AF_2242 PF00206 Lyase AF_2242 PF10397 Adenylosuccinate lyase C-terminus AF_2243 PF02803 Thiolase, C-terminal domain AF_2243 PF00108 Thiolase, N-terminal domain AF_2244 PF02770 Acyl-CoA dehydrogenase, middle domain AF_2244 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_2244 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_2249 PF00072 Response regulator receiver domain AF_2250 PF01979 Amidohydrolase family AF_2251 PF02464 Competence-damaged protein AF_2251 PF00994 Probable molybdopterin binding domain AF_2251 PF18146 Damage-inducible protein CinA KH domain AF_2252 PF00764 Arginosuccinate synthase AF_2253 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AF_2254 PF00271 Helicase conserved C-terminal domain AF_2254 PF00270 DEAD/DEAH box helicase AF_2255 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AF_2255 PF02272 DHHA1 domain AF_2255 PF01411 tRNA synthetases class II (A) AF_2256 PF00881 Nitroreductase family AF_2256 PF01996 F420-0:Gamma-glutamyl ligase AF_2257 PF07478 D-ala D-ala ligase C-terminus AF_2257 PF01820 D-ala D-ala ligase N-terminus AF_2258 PF07690 Major Facilitator Superfamily AF_2264 PF03061 Thioesterase superfamily AF_2265 PF00117 Glutamine amidotransferase class-I AF_2266 PF00753 Metallo-beta-lactamase superfamily AF_2266 PF16123 Hydroxyacylglutathione hydrolase C-terminus AF_2267 PF00881 Nitroreductase family AF_2269 PF10609 NUBPL iron-transfer P-loop NTPase AF_2273 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AF_2273 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AF_2275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AF_2275 PF02770 Acyl-CoA dehydrogenase, middle domain AF_2275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AF_2277 PF03167 Uracil DNA glycosylase superfamily AF_2281 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain AF_2281 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AF_2283 PF00411 Ribosomal protein S11 AF_2284 PF01479 S4 domain AF_2284 PF00163 Ribosomal protein S4/S9 N-terminal domain AF_2285 PF00416 Ribosomal protein S13/S18 AF_2286 PF00348 Polyprenyl synthetase AF_2288 PF00696 Amino acid kinase family AF_2289 PF00288 GHMP kinases N terminal domain AF_2289 PF10509 Galactokinase galactose-binding signature AF_2289 PF08544 GHMP kinases C terminal AF_2290 PF00850 Histone deacetylase domain AF_2295 PF00282 Pyridoxal-dependent decarboxylase conserved domain AF_2299 PF01066 CDP-alcohol phosphatidyltransferase AF_2299 PF00483 Nucleotidyl transferase AF_2300 PF01916 Deoxyhypusine synthase AF_2301 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AF_2303 PF08443 RimK-like ATP-grasp domain AF_2303 PF18030 RimK PreATP-grasp domain AF_2310 PF01875 Memo-like protein AF_2313 PF00171 Aldehyde dehydrogenase family AF_2313 PF01575 MaoC like domain AF_2314 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AF_2314 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AF_2315 PF00293 NUDIX domain AF_2315 PF01467 Cytidylyltransferase-like AF_2316 PF04055 Radical SAM superfamily AF_2316 PF06463 Molybdenum Cofactor Synthesis C AF_2323 PF02654 Cobalamin-5-phosphate synthase AF_2324 PF01029 NusB family AF_2324 PF01189 16S rRNA methyltransferase RsmB/F AF_2327 PF08501 Shikimate dehydrogenase substrate binding domain AF_2327 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AF_2327 PF01488 Shikimate / quinate 5-dehydrogenase AF_2328 PF02686 Glu-tRNAGln amidotransferase C subunit AF_2329 PF01425 Amidase AF_2334 PF17284 Spermidine synthase tetramerisation domain AF_2336 PF00364 Biotin-requiring enzyme AF_2336 PF00561 alpha/beta hydrolase fold AF_2350 PF00271 Helicase conserved C-terminal domain AF_2350 PF00176 SNF2 family N-terminal domain AF_2363 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AF_2363 PF02769 AIR synthase related protein, C-terminal domain AF_2363 PF00586 AIR synthase related protein, N-terminal domain AF_2364 PF00005 ABC transporter AF_2365 PF01458 Uncharacterized protein family (UPF0051) AF_2366 PF00155 Aminotransferase class I and II AF_2367 PF00583 Acetyltransferase (GNAT) family AF_2368 PF00501 AMP-binding enzyme AF_2368 PF13193 AMP-binding enzyme C-terminal domain AF_2372 PF00459 Inositol monophosphatase family AF_2373 PF01513 ATP-NAD kinase AF_2380 PF10609 NUBPL iron-transfer P-loop NTPase AF_2382 PF10609 NUBPL iron-transfer P-loop NTPase AF_2384 PF01568 Molydopterin dinucleotide binding domain AF_2384 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AF_2384 PF00384 Molybdopterin oxidoreductase AF_2385 PF13247 4Fe-4S dicluster domain AF_2388 PF16916 Dimerisation domain of Zinc Transporter AF_2388 PF01545 Cation efflux family AF_2389-C PF16177 Acetyl-coenzyme A synthetase N-terminus AF_2389-C PF13193 AMP-binding enzyme C-terminal domain AF_2389-C PF00501 AMP-binding enzyme AF_2394 PF07670 Nucleoside recognition AF_2394 PF07664 Ferrous iron transport protein B C terminus AF_2394 PF02421 Ferrous iron transport protein B AF_2394 PF17910 FeoB cytosolic helical domain AF_2395 PF02742 Iron dependent repressor, metal binding and dimerisation domain AF_2395 PF01325 Iron dependent repressor, N-terminal DNA binding domain AF_2399 PF08032 RNA 2'-O ribose methyltransferase substrate binding AF_2399 PF00588 SpoU rRNA Methylase family AF_2406 PF00270 DEAD/DEAH box helicase AF_2406 PF00271 Helicase conserved C-terminal domain AF_2406 PF09369 Domain of unknown function (DUF1998) AF_2407 PF00753 Metallo-beta-lactamase superfamily AF_2409 PF08331 Domain of unknown function (DUF1730) AF_2411 PF00296 Luciferase-like monooxygenase AF_2412 PF01964 Radical SAM ThiC family AF_2413 PF04055 Radical SAM superfamily AF_2413 PF13186 Iron-sulfur cluster-binding domain AF_2415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AF_2415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AF_2419 PF00072 Response regulator receiver domain AF_2420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AF_2420 PF00512 His Kinase A (phospho-acceptor) domain AF_2420 PF00989 PAS fold AF_2420 PF13426 PAS domain AF_2420 PF13188 PAS domain AF_2421 PF09334 tRNA synthetases class I (M) AF_2421 PF13603 Leucyl-tRNA synthetase, Domain 2 AF_2421 PF00133 tRNA synthetases class I (I, L, M and V) AF_2421 PF08264 Anticodon-binding domain of tRNA AF_2425 PF17863 AAA lid domain AF_2425 PF07726 ATPase family associated with various cellular activities (AAA) AF_2429 PF00378 Enoyl-CoA hydratase/isomerase AF_2431 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AF_2434 PF09827 CRISPR associated protein Cas2 AF_2435 PF01867 CRISPR associated protein Cas1