AF_0007	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AF_0007	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AF_0007	PWY-7766	AF_0007
AF_0012	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AF_0012	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AF_0012	PWY-7766	AF_0012
AF_0017	PWY-1361	benzoyl-CoA degradation I (aerobic)
AF_0017	PWY-5109	2-methylbutanoate biosynthesis
AF_0017	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AF_0017	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AF_0017	PWY-5177	glutaryl-CoA degradation
AF_0017	PWY-5667	CDP-diacylglycerol biosynthesis I
AF_0017	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_0017	PWY-5981	CDP-diacylglycerol biosynthesis III
AF_0017	PWY-6435	4-hydroxybenzoate biosynthesis V
AF_0017	PWY-6583	pyruvate fermentation to butanol I
AF_0017	PWY-6863	pyruvate fermentation to hexanol
AF_0017	PWY-6883	pyruvate fermentation to butanol II
AF_0017	PWY-6944	androstenedione degradation
AF_0017	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AF_0017	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AF_0017	PWY-7007	methyl ketone biosynthesis
AF_0017	PWY-7046	4-coumarate degradation (anaerobic)
AF_0017	PWY-7094	fatty acid salvage
AF_0017	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AF_0017	PWY-735	jasmonic acid biosynthesis
AF_0017	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AF_0017	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AF_0017	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AF_0017	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AF_0017	PWY-7726	AF_0017
AF_0017	PWY-7778	AF_0017
AF_0017	PWY-7779	AF_0017
AF_0017	PWY-7902	AF_0017
AF_0028	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AF_0033	PWY-4381	fatty acid biosynthesis initiation I
AF_0035	PWY-3861	mannitol degradation II
AF_0035	PWY-3881	mannitol biosynthesis
AF_0035	PWY-5659	GDP-mannose biosynthesis
AF_0035	PWY-6992	1,5-anhydrofructose degradation
AF_0035	PWY-7456	mannan degradation
AF_0035	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
AF_0035	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AF_0037	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AF_0037	PWY-6269	adenosylcobalamin salvage from cobinamide II
AF_0037	PWY-7961	AF_0037
AF_0037	PWY-7963	AF_0037
AF_0037	PWY-7964	AF_0037
AF_0037	PWY-7965	AF_0037
AF_0037	PWY-7966	AF_0037
AF_0037	PWY-7967	AF_0037
AF_0037	PWY-7968	AF_0037
AF_0037	PWY-7969	AF_0037
AF_0037	PWY-7970	AF_0037
AF_0037	PWY-7975	AF_0037
AF_0050	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AF_0050	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AF_0061	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AF_0061	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AF_0061	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AF_0061	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AF_0061	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AF_0061	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AF_0074	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AF_0074	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AF_0103	PWY-1042	glycolysis IV (plant cytosol)
AF_0103	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AF_0103	PWY-5484	glycolysis II (from fructose 6-phosphate)
AF_0103	PWY-5723	Rubisco shunt
AF_0103	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AF_0103	PWY-6886	1-butanol autotrophic biosynthesis
AF_0103	PWY-6901	superpathway of glucose and xylose degradation
AF_0103	PWY-7003	glycerol degradation to butanol
AF_0103	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AF_0103	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AF_0106	PWY-5686	UMP biosynthesis
AF_0106	PWY-7790	AF_0106
AF_0106	PWY-7791	AF_0106
AF_0108	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AF_0110	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AF_0113	PWY-7234	inosine-5'-phosphate biosynthesis III
AF_0116	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AF_0116	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AF_0161	PWY-6823	molybdenum cofactor biosynthesis
AF_0164	PWY-6683	sulfate reduction III (assimilatory)
AF_0181	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AF_0186	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AF_0197	PWY-5108	L-isoleucine biosynthesis V
AF_0197	PWY-5132	humulone biosynthesis
AF_0197	PWY-5133	cohumulone biosynthesis
AF_0197	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AF_0197	PWY-7118	chitin degradation to ethanol
AF_0197	PWY-7857	AF_0197
AF_0209	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AF_0209	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AF_0209	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AF_0209	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AF_0209	PWY-6978	plastoquinol-9 biosynthesis II
AF_0216	PWY-6829	tRNA methylation (yeast)
AF_0219	PWY-6871	3-methylbutanol biosynthesis
AF_0227	PWY-3461	L-tyrosine biosynthesis II
AF_0227	PWY-3462	L-phenylalanine biosynthesis II
AF_0227	PWY-6120	L-tyrosine biosynthesis III
AF_0227	PWY-6627	salinosporamide A biosynthesis
AF_0227	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AF_0227	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AF_0227	PWY-7626	bacilysin biosynthesis
AF_0228	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AF_0228	PWY-6416	quinate degradation II
AF_0228	PWY-6707	gallate biosynthesis
AF_0229	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AF_0230	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AF_0240	PWY-6610	adenine and adenosine salvage IV
AF_0252	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AF_0252	PWY-7177	UTP and CTP dephosphorylation II
AF_0252	PWY-7185	UTP and CTP dephosphorylation I
AF_0253	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AF_0256	PWY-7234	inosine-5'-phosphate biosynthesis III
AF_0260	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AF_0276	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AF_0276	PWY-6269	adenosylcobalamin salvage from cobinamide II
AF_0276	PWY-7964	AF_0276
AF_0276	PWY-7965	AF_0276
AF_0276	PWY-7966	AF_0276
AF_0276	PWY-7967	AF_0276
AF_0276	PWY-7968	AF_0276
AF_0276	PWY-7969	AF_0276
AF_0276	PWY-7970	AF_0276
AF_0285	PWY-1361	benzoyl-CoA degradation I (aerobic)
AF_0285	PWY-5109	2-methylbutanoate biosynthesis
AF_0285	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AF_0285	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AF_0285	PWY-5177	glutaryl-CoA degradation
AF_0285	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_0285	PWY-6435	4-hydroxybenzoate biosynthesis V
AF_0285	PWY-6583	pyruvate fermentation to butanol I
AF_0285	PWY-6863	pyruvate fermentation to hexanol
AF_0285	PWY-6883	pyruvate fermentation to butanol II
AF_0285	PWY-6944	androstenedione degradation
AF_0285	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AF_0285	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AF_0285	PWY-7007	methyl ketone biosynthesis
AF_0285	PWY-7046	4-coumarate degradation (anaerobic)
AF_0285	PWY-7094	fatty acid salvage
AF_0285	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AF_0285	PWY-735	jasmonic acid biosynthesis
AF_0285	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AF_0285	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AF_0285	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AF_0285	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AF_0285	PWY-7726	AF_0285
AF_0285	PWY-7778	AF_0285
AF_0285	PWY-7779	AF_0285
AF_0288	PWY-5340	sulfate activation for sulfonation
AF_0324	PWY-3221	dTDP-L-rhamnose biosynthesis II
AF_0324	PWY-6808	dTDP-D-forosamine biosynthesis
AF_0324	PWY-6942	dTDP-D-desosamine biosynthesis
AF_0324	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AF_0324	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AF_0324	PWY-6974	dTDP-L-olivose biosynthesis
AF_0324	PWY-6976	dTDP-L-mycarose biosynthesis
AF_0324	PWY-7104	dTDP-L-megosamine biosynthesis
AF_0324	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AF_0324	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AF_0324	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AF_0324	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AF_0324	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AF_0324	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AF_0324	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AF_0324	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AF_0324	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AF_0324	PWY-7688	AF_0324
AF_0324	PWY-7814	AF_0324
AF_0343	PWY-7731	AF_0343
AF_0366	PWY-5108	L-isoleucine biosynthesis V
AF_0366	PWY-5132	humulone biosynthesis
AF_0366	PWY-5133	cohumulone biosynthesis
AF_0366	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AF_0366	PWY-7118	chitin degradation to ethanol
AF_0366	PWY-7857	AF_0366
AF_0370	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AF_0370	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AF_0379	PWY-7784	AF_0379
AF_0380	PWY-7658	protein <I>N</i>-glycosylation (<i>Methanococcus voltae</i>)
AF_0380	PWY-7661	protein <I>N</i>-glycosylation (<i>Haloferax volcanii</i>)
AF_0389	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
AF_0389	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
AF_0390	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
AF_0390	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
AF_0403	PWY-6349	CDP-archaeol biosynthesis
AF_0404	PWY-6349	CDP-archaeol biosynthesis
AF_0409	PWY-5097	L-lysine biosynthesis VI
AF_0422	PWY-5194	siroheme biosynthesis
AF_0422	PWY-5196	factor 430 biosynthesis
AF_0422	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AF_0423	PWY-6683	sulfate reduction III (assimilatory)
AF_0424	PWY-5306	superpathway of thiosulfate metabolism (<i>Desulfovibrio sulfodismutans</i>)
AF_0424	PWY-5360	superpathway of tetrathionate reduction (<i>Salmonella typhimurium</i>)
AF_0424	PWY-6683	sulfate reduction III (assimilatory)
AF_0434	PWY-1361	benzoyl-CoA degradation I (aerobic)
AF_0434	PWY-5109	2-methylbutanoate biosynthesis
AF_0434	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AF_0434	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AF_0434	PWY-5177	glutaryl-CoA degradation
AF_0434	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_0434	PWY-6435	4-hydroxybenzoate biosynthesis V
AF_0434	PWY-6583	pyruvate fermentation to butanol I
AF_0434	PWY-6863	pyruvate fermentation to hexanol
AF_0434	PWY-6883	pyruvate fermentation to butanol II
AF_0434	PWY-6944	androstenedione degradation
AF_0434	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AF_0434	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AF_0434	PWY-7007	methyl ketone biosynthesis
AF_0434	PWY-7046	4-coumarate degradation (anaerobic)
AF_0434	PWY-7094	fatty acid salvage
AF_0434	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AF_0434	PWY-735	jasmonic acid biosynthesis
AF_0434	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AF_0434	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AF_0434	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AF_0434	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AF_0434	PWY-7726	AF_0434
AF_0434	PWY-7778	AF_0434
AF_0434	PWY-7779	AF_0434
AF_0441	PWY-6703	preQ<sub>0</sub> biosynthesis
AF_0442	PWY-6703	preQ<sub>0</sub> biosynthesis
AF_0444	PWY-181	photorespiration
AF_0458	PWY-6749	CMP-legionaminate biosynthesis I
AF_0464	PWY-6349	CDP-archaeol biosynthesis
AF_0479	PWY-5254	methanofuran biosynthesis
AF_0484	PWY-6167	flavin biosynthesis II (archaea)
AF_0484	PWY-6168	flavin biosynthesis III (fungi)
AF_0484	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AF_0484	PWY-7991	AF_0484
AF_0508	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
AF_0508	PWY-6891	thiazole biosynthesis II (Bacillus)
AF_0508	PWY-6892	thiazole biosynthesis I (E. coli)
AF_0509	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
AF_0520	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AF_0564	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AF_0572	PWY-5254	methanofuran biosynthesis
AF_0587	PWY-6700	queuosine biosynthesis
AF_0587	PWY-6711	archaeosine biosynthesis
AF_0587	PWY-7923	AF_0587
AF_0588	PWY-6700	queuosine biosynthesis
AF_0588	PWY-6711	archaeosine biosynthesis
AF_0588	PWY-7923	AF_0588
AF_0596	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AF_0596	PWY-7820	AF_0596
AF_0646	PWY-40	putrescine biosynthesis I
AF_0646	PWY-6305	putrescine biosynthesis IV
AF_0647	PWY-5913	TCA cycle VI (obligate autotrophs)
AF_0647	PWY-6549	L-glutamine biosynthesis III
AF_0647	PWY-6728	methylaspartate cycle
AF_0647	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_0647	PWY-7124	ethylene biosynthesis V (engineered)
AF_0647	PWY-7254	TCA cycle VII (acetate-producers)
AF_0647	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AF_0670	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AF_0676	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AF_0677	PWY-5108	L-isoleucine biosynthesis V
AF_0677	PWY-5132	humulone biosynthesis
AF_0677	PWY-5133	cohumulone biosynthesis
AF_0677	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AF_0677	PWY-7118	chitin degradation to ethanol
AF_0677	PWY-7857	AF_0677
AF_0682	PWY-3781	aerobic respiration I (cytochrome c)
AF_0682	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AF_0682	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AF_0682	PWY-5690	TCA cycle II (plants and fungi)
AF_0682	PWY-6728	methylaspartate cycle
AF_0682	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_0682	PWY-7254	TCA cycle VII (acetate-producers)
AF_0682	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AF_0700	PWY-2941	L-lysine biosynthesis II
AF_0700	PWY-2942	L-lysine biosynthesis III
AF_0700	PWY-5097	L-lysine biosynthesis VI
AF_0700	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AF_0700	PWY-6559	spermidine biosynthesis II
AF_0700	PWY-6562	norspermidine biosynthesis
AF_0700	PWY-7153	grixazone biosynthesis
AF_0700	PWY-7977	AF_0700
AF_0708	PWY-6711	archaeosine biosynthesis
AF_0708	PWY-7923	AF_0708
AF_0710	PWY-5484	glycolysis II (from fructose 6-phosphate)
AF_0710	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AF_0714	PWY-5198	factor 420 biosynthesis
AF_0720	PWY-6482	diphthamide biosynthesis (archaea)
AF_0720	PWY-7546	diphthamide biosynthesis (eukaryotes)
AF_0721	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AF_0723	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AF_0724	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AF_0725	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AF_0732	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AF_0733	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AF_0733	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AF_0733	PWY-6896	thiamin salvage I
AF_0733	PWY-6897	thiamin salvage II
AF_0747	PWY-2941	L-lysine biosynthesis II
AF_0747	PWY-5097	L-lysine biosynthesis VI
AF_0748	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AF_0748	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AF_0748	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AF_0749	PWY-5392	reductive TCA cycle II
AF_0749	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_0756	PWY-7805	AF_0756
AF_0756	PWY-7807	AF_0756
AF_0767	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AF_0767	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AF_0767	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AF_0767	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AF_0767	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AF_0767	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AF_0767	PWY-7205	CMP phosphorylation
AF_0767	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AF_0767	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AF_0767	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AF_0767	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AF_0767	PWY-7224	purine deoxyribonucleosides salvage
AF_0767	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AF_0767	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AF_0800	PWY-2941	L-lysine biosynthesis II
AF_0800	PWY-2942	L-lysine biosynthesis III
AF_0800	PWY-5097	L-lysine biosynthesis VI
AF_0814	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AF_0814	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AF_0814	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AF_0814	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AF_0815	PWY-6829	tRNA methylation (yeast)
AF_0821	PWY-5381	pyridine nucleotide cycling (plants)
AF_0841	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AF_0851	PWY-6938	NADH repair
AF_0852	PWY-1622	formaldehyde assimilation I (serine pathway)
AF_0852	PWY-181	photorespiration
AF_0852	PWY-2161	folate polyglutamylation
AF_0852	PWY-2201	folate transformations I
AF_0852	PWY-3661	glycine betaine degradation I
AF_0852	PWY-3661-1	glycine betaine degradation II (mammalian)
AF_0852	PWY-3841	folate transformations II
AF_0852	PWY-5497	purine nucleobases degradation II (anaerobic)
AF_0855	PWY-5481	pyruvate fermentation to lactate
AF_0855	PWY-6901	superpathway of glucose and xylose degradation
AF_0861	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AF_0861	PWY-5686	UMP biosynthesis
AF_0861	PWY-7790	AF_0861
AF_0861	PWY-7791	AF_0861
AF_0861	PWY-7796	AF_0861
AF_0866	PWY-4261	glycerol degradation I
AF_0871	PWY-5667	CDP-diacylglycerol biosynthesis I
AF_0871	PWY-5981	CDP-diacylglycerol biosynthesis III
AF_0871	PWY-7902	AF_0871
AF_0873	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AF_0873	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AF_0873	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AF_0873	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AF_0878	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AF_0878	PWY-6148	tetrahydromethanopterin biosynthesis
AF_0878	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AF_0878	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AF_0878	PWY-7852	AF_0878
AF_0878	PWY-7853	AF_0878
AF_0883	PWY-4983	L-citrulline-nitric oxide cycle
AF_0883	PWY-4984	urea cycle
AF_0883	PWY-5	canavanine biosynthesis
AF_0883	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AF_0883	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AF_0886	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AF_0900	PWY-6689	tRNA splicing
AF_0900	PWY-7803	AF_0900
AF_0909	PWY-2941	L-lysine biosynthesis II
AF_0909	PWY-2942	L-lysine biosynthesis III
AF_0909	PWY-5097	L-lysine biosynthesis VI
AF_0910	PWY-2941	L-lysine biosynthesis II
AF_0910	PWY-2942	L-lysine biosynthesis III
AF_0910	PWY-5097	L-lysine biosynthesis VI
AF_0917	PWY-5198	factor 420 biosynthesis
AF_0918	PWY-6823	molybdenum cofactor biosynthesis
AF_0929	PWY-5686	UMP biosynthesis
AF_0929	PWY-7790	AF_0929
AF_0929	PWY-7791	AF_0929
AF_0930	PWY-6823	molybdenum cofactor biosynthesis
AF_0931	PWY-6823	molybdenum cofactor biosynthesis
AF_0932	PWY-5392	reductive TCA cycle II
AF_0932	PWY-5537	pyruvate fermentation to acetate V
AF_0932	PWY-5538	pyruvate fermentation to acetate VI
AF_0932	PWY-5690	TCA cycle II (plants and fungi)
AF_0932	PWY-5913	TCA cycle VI (obligate autotrophs)
AF_0932	PWY-6728	methylaspartate cycle
AF_0932	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_0932	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AF_0933	PWY-5057	L-valine degradation II
AF_0933	PWY-5076	L-leucine degradation III
AF_0933	PWY-5078	L-isoleucine degradation II
AF_0933	PWY-5101	L-isoleucine biosynthesis II
AF_0933	PWY-5103	L-isoleucine biosynthesis III
AF_0933	PWY-5104	L-isoleucine biosynthesis IV
AF_0933	PWY-5108	L-isoleucine biosynthesis V
AF_0933	PWY-7767	AF_0933
AF_0942	PWY-5381	pyridine nucleotide cycling (plants)
AF_0942	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AF_0942	PWY-6596	adenosine nucleotides degradation I
AF_0942	PWY-6606	guanosine nucleotides degradation II
AF_0942	PWY-6607	guanosine nucleotides degradation I
AF_0942	PWY-6608	guanosine nucleotides degradation III
AF_0942	PWY-7185	UTP and CTP dephosphorylation I
AF_0942	PWY-7821	AF_0942
AF_0943	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AF_0943	PWY-5723	Rubisco shunt
AF_0949	PWY-381	nitrate reduction II (assimilatory)
AF_0949	PWY-5675	nitrate reduction V (assimilatory)
AF_0949	PWY-6549	L-glutamine biosynthesis III
AF_0949	PWY-6963	ammonia assimilation cycle I
AF_0949	PWY-6964	ammonia assimilation cycle II
AF_0957	PWY-5101	L-isoleucine biosynthesis II
AF_0957	PWY-6871	3-methylbutanol biosynthesis
AF_0975	PWY-5108	L-isoleucine biosynthesis V
AF_0975	PWY-5132	humulone biosynthesis
AF_0975	PWY-5133	cohumulone biosynthesis
AF_0975	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AF_0975	PWY-7118	chitin degradation to ethanol
AF_0975	PWY-7857	AF_0975
AF_1014	PWY-5101	L-isoleucine biosynthesis II
AF_1014	PWY-5103	L-isoleucine biosynthesis III
AF_1014	PWY-5104	L-isoleucine biosynthesis IV
AF_1014	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AF_1025	PWY-1361	benzoyl-CoA degradation I (aerobic)
AF_1025	PWY-5109	2-methylbutanoate biosynthesis
AF_1025	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AF_1025	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AF_1025	PWY-5177	glutaryl-CoA degradation
AF_1025	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_1025	PWY-6435	4-hydroxybenzoate biosynthesis V
AF_1025	PWY-6583	pyruvate fermentation to butanol I
AF_1025	PWY-6863	pyruvate fermentation to hexanol
AF_1025	PWY-6883	pyruvate fermentation to butanol II
AF_1025	PWY-6944	androstenedione degradation
AF_1025	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AF_1025	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AF_1025	PWY-7007	methyl ketone biosynthesis
AF_1025	PWY-7046	4-coumarate degradation (anaerobic)
AF_1025	PWY-7094	fatty acid salvage
AF_1025	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AF_1025	PWY-735	jasmonic acid biosynthesis
AF_1025	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AF_1025	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AF_1025	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AF_1025	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AF_1025	PWY-7726	AF_1025
AF_1025	PWY-7778	AF_1025
AF_1025	PWY-7779	AF_1025
AF_1061	PWY-5254	methanofuran biosynthesis
AF_1066	PWY-7784	AF_1066
AF_1097	PWY-5659	GDP-mannose biosynthesis
AF_1097	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AF_1100	PWY-5372	carbon tetrachloride degradation II
AF_1100	PWY-6780	hydrogen production VI
AF_1100	PWY-7784	AF_1100
AF_1122	PWY-1361	benzoyl-CoA degradation I (aerobic)
AF_1122	PWY-5109	2-methylbutanoate biosynthesis
AF_1122	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AF_1122	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AF_1122	PWY-5177	glutaryl-CoA degradation
AF_1122	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_1122	PWY-6435	4-hydroxybenzoate biosynthesis V
AF_1122	PWY-6583	pyruvate fermentation to butanol I
AF_1122	PWY-6863	pyruvate fermentation to hexanol
AF_1122	PWY-6883	pyruvate fermentation to butanol II
AF_1122	PWY-6944	androstenedione degradation
AF_1122	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AF_1122	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AF_1122	PWY-7007	methyl ketone biosynthesis
AF_1122	PWY-7046	4-coumarate degradation (anaerobic)
AF_1122	PWY-7094	fatty acid salvage
AF_1122	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AF_1122	PWY-735	jasmonic acid biosynthesis
AF_1122	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AF_1122	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AF_1122	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AF_1122	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AF_1122	PWY-7726	AF_1122
AF_1122	PWY-7778	AF_1122
AF_1122	PWY-7779	AF_1122
AF_1132	PWY-1042	glycolysis IV (plant cytosol)
AF_1132	PWY-1622	formaldehyde assimilation I (serine pathway)
AF_1132	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AF_1132	PWY-5484	glycolysis II (from fructose 6-phosphate)
AF_1132	PWY-5723	Rubisco shunt
AF_1132	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AF_1132	PWY-6886	1-butanol autotrophic biosynthesis
AF_1132	PWY-6901	superpathway of glucose and xylose degradation
AF_1132	PWY-7003	glycerol degradation to butanol
AF_1132	PWY-7124	ethylene biosynthesis V (engineered)
AF_1132	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AF_1146	PWY-1042	glycolysis IV (plant cytosol)
AF_1146	PWY-5484	glycolysis II (from fructose 6-phosphate)
AF_1146	PWY-6886	1-butanol autotrophic biosynthesis
AF_1146	PWY-6901	superpathway of glucose and xylose degradation
AF_1146	PWY-7003	glycerol degradation to butanol
AF_1147	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AF_1157	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AF_1157	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AF_1157	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AF_1166	PWY-7980	AF_1166
AF_1167	PWY-7980	AF_1167
AF_1176	PWY-5451	acetone degradation I (to methylglyoxal)
AF_1176	PWY-6588	pyruvate fermentation to acetone
AF_1176	PWY-6876	isopropanol biosynthesis
AF_1176	PWY-7466	acetone degradation III (to propane-1,2-diol)
AF_1177	PWY-1361	benzoyl-CoA degradation I (aerobic)
AF_1177	PWY-5109	2-methylbutanoate biosynthesis
AF_1177	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AF_1177	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AF_1177	PWY-5177	glutaryl-CoA degradation
AF_1177	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_1177	PWY-6435	4-hydroxybenzoate biosynthesis V
AF_1177	PWY-6583	pyruvate fermentation to butanol I
AF_1177	PWY-6863	pyruvate fermentation to hexanol
AF_1177	PWY-6883	pyruvate fermentation to butanol II
AF_1177	PWY-6944	androstenedione degradation
AF_1177	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AF_1177	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AF_1177	PWY-7007	methyl ketone biosynthesis
AF_1177	PWY-7046	4-coumarate degradation (anaerobic)
AF_1177	PWY-7094	fatty acid salvage
AF_1177	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AF_1177	PWY-735	jasmonic acid biosynthesis
AF_1177	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AF_1177	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AF_1177	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AF_1177	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AF_1177	PWY-7726	AF_1177
AF_1177	PWY-7778	AF_1177
AF_1177	PWY-7779	AF_1177
AF_1179	PWY-5663	tetrahydrobiopterin biosynthesis I
AF_1179	PWY-5664	tetrahydrobiopterin biosynthesis II
AF_1179	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AF_1179	PWY-6703	preQ<sub>0</sub> biosynthesis
AF_1179	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AF_1179	PWY-6983	tetrahydrobiopterin biosynthesis III
AF_1179	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AF_1179	PWY-7852	AF_1179
AF_1179	PWY-7853	AF_1179
AF_1190	PWY-1361	benzoyl-CoA degradation I (aerobic)
AF_1190	PWY-5109	2-methylbutanoate biosynthesis
AF_1190	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AF_1190	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AF_1190	PWY-5177	glutaryl-CoA degradation
AF_1190	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_1190	PWY-6435	4-hydroxybenzoate biosynthesis V
AF_1190	PWY-6583	pyruvate fermentation to butanol I
AF_1190	PWY-6863	pyruvate fermentation to hexanol
AF_1190	PWY-6883	pyruvate fermentation to butanol II
AF_1190	PWY-6944	androstenedione degradation
AF_1190	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AF_1190	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AF_1190	PWY-7007	methyl ketone biosynthesis
AF_1190	PWY-7046	4-coumarate degradation (anaerobic)
AF_1190	PWY-7094	fatty acid salvage
AF_1190	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AF_1190	PWY-735	jasmonic acid biosynthesis
AF_1190	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AF_1190	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AF_1190	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AF_1190	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AF_1190	PWY-7726	AF_1190
AF_1190	PWY-7778	AF_1190
AF_1190	PWY-7779	AF_1190
AF_1191	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AF_1192	PWY-5392	reductive TCA cycle II
AF_1192	PWY-5537	pyruvate fermentation to acetate V
AF_1192	PWY-5538	pyruvate fermentation to acetate VI
AF_1192	PWY-5690	TCA cycle II (plants and fungi)
AF_1192	PWY-5913	TCA cycle VI (obligate autotrophs)
AF_1192	PWY-6728	methylaspartate cycle
AF_1192	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_1192	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AF_1196	PWY-7784	AF_1196
AF_1200	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AF_1200	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AF_1200	PWY-7717	AF_1200
AF_1200	PWY-7733	AF_1200
AF_1200	PWY-7734	AF_1200
AF_1200	PWY-7765	AF_1200
AF_1206	PWY-1361	benzoyl-CoA degradation I (aerobic)
AF_1206	PWY-5109	2-methylbutanoate biosynthesis
AF_1206	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AF_1206	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AF_1206	PWY-5177	glutaryl-CoA degradation
AF_1206	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_1206	PWY-6435	4-hydroxybenzoate biosynthesis V
AF_1206	PWY-6583	pyruvate fermentation to butanol I
AF_1206	PWY-6863	pyruvate fermentation to hexanol
AF_1206	PWY-6883	pyruvate fermentation to butanol II
AF_1206	PWY-6944	androstenedione degradation
AF_1206	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AF_1206	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AF_1206	PWY-7007	methyl ketone biosynthesis
AF_1206	PWY-7046	4-coumarate degradation (anaerobic)
AF_1206	PWY-7094	fatty acid salvage
AF_1206	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AF_1206	PWY-735	jasmonic acid biosynthesis
AF_1206	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AF_1206	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AF_1206	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AF_1206	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AF_1206	PWY-7726	AF_1206
AF_1206	PWY-7778	AF_1206
AF_1206	PWY-7779	AF_1206
AF_1211	PWY-5392	reductive TCA cycle II
AF_1211	PWY-5483	pyruvate fermentation to acetate III
AF_1211	PWY-5535	acetate formation from acetyl-CoA II
AF_1211	PWY-5537	pyruvate fermentation to acetate V
AF_1211	PWY-5538	pyruvate fermentation to acetate VI
AF_1211	PWY-5690	TCA cycle II (plants and fungi)
AF_1211	PWY-5913	TCA cycle VI (obligate autotrophs)
AF_1211	PWY-6728	methylaspartate cycle
AF_1211	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_1211	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AF_1212	PWY-1281	sulfoacetaldehyde degradation I
AF_1212	PWY-5482	pyruvate fermentation to acetate II
AF_1212	PWY-5485	pyruvate fermentation to acetate IV
AF_1212	PWY-5497	purine nucleobases degradation II (anaerobic)
AF_1212	PWY-6637	sulfolactate degradation II
AF_1216	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AF_1241	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AF_1242	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AF_1242	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AF_1243	PWY-5194	siroheme biosynthesis
AF_1243	PWY-5196	factor 430 biosynthesis
AF_1243	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AF_1255	PWY-4981	L-proline biosynthesis II (from arginine)
AF_1255	PWY-4984	urea cycle
AF_1255	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AF_1260	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AF_1260	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AF_1260	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AF_1271	PWY-6123	inosine-5'-phosphate biosynthesis I
AF_1271	PWY-6124	inosine-5'-phosphate biosynthesis II
AF_1271	PWY-7234	inosine-5'-phosphate biosynthesis III
AF_1272	PWY-6123	inosine-5'-phosphate biosynthesis I
AF_1272	PWY-6124	inosine-5'-phosphate biosynthesis II
AF_1272	PWY-7234	inosine-5'-phosphate biosynthesis III
AF_1273	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AF_1273	PWY-5686	UMP biosynthesis
AF_1273	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AF_1273	PWY-7790	AF_1273
AF_1273	PWY-7791	AF_1273
AF_1274	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AF_1274	PWY-5686	UMP biosynthesis
AF_1274	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AF_1274	PWY-7790	AF_1274
AF_1274	PWY-7791	AF_1274
AF_1280	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AF_1280	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AF_1304	PWY-1042	glycolysis IV (plant cytosol)
AF_1304	PWY-5484	glycolysis II (from fructose 6-phosphate)
AF_1304	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AF_1304	PWY-7003	glycerol degradation to butanol
AF_1305	PWY-1723	formaldehyde oxidation V (H<sub>4</sub>MPT pathway)
AF_1305	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AF_1305	PWY-5686	UMP biosynthesis
AF_1305	PWY-7790	AF_1305
AF_1305	PWY-7791	AF_1305
AF_1305	PWY-7796	AF_1305
AF_1308	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AF_1308	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AF_1308	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AF_1308	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AF_1308	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AF_1308	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AF_1320	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AF_1324	PWY-4261	glycerol degradation I
AF_1341	PWY-5532	adenosine nucleotides degradation IV
AF_1342	PWY-5532	adenosine nucleotides degradation IV
AF_1416	PWY-6167	flavin biosynthesis II (archaea)
AF_1416	PWY-6168	flavin biosynthesis III (fungi)
AF_1417	PWY-6832	2-aminoethylphosphonate degradation II
AF_1418	PWY-6167	flavin biosynthesis II (archaea)
AF_1418	PWY-6168	flavin biosynthesis III (fungi)
AF_1422	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AF_1422	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AF_1425	PWY-1042	glycolysis IV (plant cytosol)
AF_1425	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AF_1425	PWY-5484	glycolysis II (from fructose 6-phosphate)
AF_1425	PWY-5723	Rubisco shunt
AF_1425	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AF_1425	PWY-6886	1-butanol autotrophic biosynthesis
AF_1425	PWY-6901	superpathway of glucose and xylose degradation
AF_1425	PWY-7003	glycerol degradation to butanol
AF_1425	PWY-7124	ethylene biosynthesis V (engineered)
AF_1425	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AF_1442	PWY-1042	glycolysis IV (plant cytosol)
AF_1442	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AF_1442	PWY-5484	glycolysis II (from fructose 6-phosphate)
AF_1442	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AF_1442	PWY-7385	1,3-propanediol biosynthesis (engineered)
AF_1449	PWY-5480	pyruvate fermentation to ethanol I
AF_1449	PWY-5485	pyruvate fermentation to acetate IV
AF_1449	PWY-5493	reductive monocarboxylic acid cycle
AF_1485	PWY-6700	queuosine biosynthesis
AF_1486	PWY-1622	formaldehyde assimilation I (serine pathway)
AF_1486	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AF_1486	PWY-5913	TCA cycle VI (obligate autotrophs)
AF_1486	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AF_1486	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AF_1486	PWY-6549	L-glutamine biosynthesis III
AF_1486	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AF_1486	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AF_1486	PWY-7124	ethylene biosynthesis V (engineered)
AF_1494	PWY-3801	sucrose degradation II (sucrose synthase)
AF_1494	PWY-5054	sorbitol biosynthesis I
AF_1494	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AF_1494	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AF_1494	PWY-5659	GDP-mannose biosynthesis
AF_1494	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AF_1494	PWY-621	sucrose degradation III (sucrose invertase)
AF_1494	PWY-622	starch biosynthesis
AF_1494	PWY-6981	chitin biosynthesis
AF_1494	PWY-6992	1,5-anhydrofructose degradation
AF_1494	PWY-7238	sucrose biosynthesis II
AF_1494	PWY-7347	sucrose biosynthesis III
AF_1494	PWY-7385	1,3-propanediol biosynthesis (engineered)
AF_1497	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AF_1506	PWY-2941	L-lysine biosynthesis II
AF_1506	PWY-2942	L-lysine biosynthesis III
AF_1506	PWY-5097	L-lysine biosynthesis VI
AF_1506	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AF_1506	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AF_1506	PWY-6559	spermidine biosynthesis II
AF_1506	PWY-6562	norspermidine biosynthesis
AF_1506	PWY-7153	grixazone biosynthesis
AF_1506	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AF_1506	PWY-7977	AF_1506
AF_1511	PWY-5392	reductive TCA cycle II
AF_1511	PWY-5483	pyruvate fermentation to acetate III
AF_1511	PWY-5535	acetate formation from acetyl-CoA II
AF_1511	PWY-5537	pyruvate fermentation to acetate V
AF_1511	PWY-5538	pyruvate fermentation to acetate VI
AF_1511	PWY-5690	TCA cycle II (plants and fungi)
AF_1511	PWY-5913	TCA cycle VI (obligate autotrophs)
AF_1511	PWY-6728	methylaspartate cycle
AF_1511	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_1511	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AF_1539	PWY-5392	reductive TCA cycle II
AF_1539	PWY-5537	pyruvate fermentation to acetate V
AF_1539	PWY-5538	pyruvate fermentation to acetate VI
AF_1539	PWY-5690	TCA cycle II (plants and fungi)
AF_1539	PWY-5913	TCA cycle VI (obligate autotrophs)
AF_1539	PWY-6728	methylaspartate cycle
AF_1539	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_1539	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AF_1540	PWY-5392	reductive TCA cycle II
AF_1540	PWY-5537	pyruvate fermentation to acetate V
AF_1540	PWY-5538	pyruvate fermentation to acetate VI
AF_1540	PWY-5690	TCA cycle II (plants and fungi)
AF_1540	PWY-5913	TCA cycle VI (obligate autotrophs)
AF_1540	PWY-6728	methylaspartate cycle
AF_1540	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_1540	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AF_1556	PWY-6703	preQ<sub>0</sub> biosynthesis
AF_1587	PWY-5532	adenosine nucleotides degradation IV
AF_1587	PWY-5723	Rubisco shunt
AF_1592	PWY-5194	siroheme biosynthesis
AF_1592	PWY-5196	factor 430 biosynthesis
AF_1592	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AF_1602	PWY-5958	acridone alkaloid biosynthesis
AF_1602	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AF_1602	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AF_1603	PWY-5958	acridone alkaloid biosynthesis
AF_1603	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AF_1603	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AF_1610	PWY-6834	spermidine biosynthesis III
AF_1630	PWY-40	putrescine biosynthesis I
AF_1630	PWY-43	putrescine biosynthesis II
AF_1630	PWY-6305	putrescine biosynthesis IV
AF_1630	PWY-6834	spermidine biosynthesis III
AF_1638	PWY-5532	adenosine nucleotides degradation IV
AF_1638	PWY-5723	Rubisco shunt
AF_1643	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AF_1643	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AF_1643	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AF_1643	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AF_1643	PWY-6978	plastoquinol-9 biosynthesis II
AF_1645	PWY-7851	AF_1645
AF_1646	PWY-6654	phosphopantothenate biosynthesis III
AF_1650	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
AF_1650	PWY-7784	AF_1650
AF_1664	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AF_1664	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AF_1664	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AF_1664	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AF_1664	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AF_1664	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AF_1664	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AF_1664	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AF_1666	PWY-6482	diphthamide biosynthesis (archaea)
AF_1666	PWY-7546	diphthamide biosynthesis (eukaryotes)
AF_1667	PWY-5278	sulfite oxidation III
AF_1667	PWY-5340	sulfate activation for sulfonation
AF_1667	PWY-6683	sulfate reduction III (assimilatory)
AF_1667	PWY-6932	selenate reduction
AF_1670	PWY-5278	sulfite oxidation III
AF_1670	PWY-5279	sulfite oxidation II
AF_1671	PWY-1341	phenylacetate degradation II (anaerobic)
AF_1671	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AF_1671	PWY-7716	AF_1671
AF_1674	PWY-6349	CDP-archaeol biosynthesis
AF_1693	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AF_1693	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AF_1693	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AF_1695	PWY-6654	phosphopantothenate biosynthesis III
AF_1719	PWY-5101	L-isoleucine biosynthesis II
AF_1719	PWY-5103	L-isoleucine biosynthesis III
AF_1719	PWY-5104	L-isoleucine biosynthesis IV
AF_1719	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AF_1719	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AF_1719	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AF_1719	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AF_1720	PWY-5101	L-isoleucine biosynthesis II
AF_1720	PWY-5103	L-isoleucine biosynthesis III
AF_1720	PWY-5104	L-isoleucine biosynthesis IV
AF_1720	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AF_1720	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AF_1720	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AF_1720	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AF_1732	PWY-2941	L-lysine biosynthesis II
AF_1732	PWY-2942	L-lysine biosynthesis III
AF_1732	PWY-5097	L-lysine biosynthesis VI
AF_1736	PWY-6174	mevalonate pathway II (archaea)
AF_1736	PWY-7391	isoprene biosynthesis II (engineered)
AF_1736	PWY-7524	mevalonate pathway III (archaea)
AF_1736	PWY-922	mevalonate pathway I
AF_1740	PWY-6349	CDP-archaeol biosynthesis
AF_1741	PWY-5686	UMP biosynthesis
AF_1741	PWY-7790	AF_1741
AF_1741	PWY-7791	AF_1741
AF_1751	PWY-1042	glycolysis IV (plant cytosol)
AF_1751	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AF_1751	PWY-5484	glycolysis II (from fructose 6-phosphate)
AF_1751	PWY-5723	Rubisco shunt
AF_1751	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AF_1751	PWY-6886	1-butanol autotrophic biosynthesis
AF_1751	PWY-6901	superpathway of glucose and xylose degradation
AF_1751	PWY-7003	glycerol degradation to butanol
AF_1751	PWY-7124	ethylene biosynthesis V (engineered)
AF_1751	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AF_1752	PWY-4261	glycerol degradation I
AF_1764	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AF_1794	PWY-2301	<i>myo</i>-inositol biosynthesis
AF_1794	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
AF_1794	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
AF_1794	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
AF_1794	PWY-6664	di-myo-inositol phosphate biosynthesis
AF_1803	PWY-6482	diphthamide biosynthesis (archaea)
AF_1803	PWY-7546	diphthamide biosynthesis (eukaryotes)
AF_1835	PWY-5796	malonate decarboxylase activation
AF_1839	PWY-5316	nicotine biosynthesis
AF_1839	PWY-5381	pyridine nucleotide cycling (plants)
AF_1839	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AF_1839	PWY-7342	superpathway of nicotine biosynthesis
AF_1840	PWY-7799	AF_1840
AF_1840	PWY-7800	AF_1840
AF_1849	PWY-5372	carbon tetrachloride degradation II
AF_1849	PWY-6780	hydrogen production VI
AF_1849	PWY-7784	AF_1849
AF_1900	PWY-7205	CMP phosphorylation
AF_1929	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
AF_1929	PWY-7784	AF_1929
AF_1931	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
AF_1931	PWY-7784	AF_1931
AF_1935	PWY-1723	formaldehyde oxidation V (H<sub>4</sub>MPT pathway)
AF_1935	PWY-7784	AF_1935
AF_1938	PWY-5392	reductive TCA cycle II
AF_1938	PWY-5537	pyruvate fermentation to acetate V
AF_1938	PWY-5538	pyruvate fermentation to acetate VI
AF_1938	PWY-5690	TCA cycle II (plants and fungi)
AF_1938	PWY-5913	TCA cycle VI (obligate autotrophs)
AF_1938	PWY-6728	methylaspartate cycle
AF_1938	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_1938	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AF_1940	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AF_1940	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AF_1940	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AF_1941	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AF_1941	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AF_1941	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AF_1954	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AF_1973	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AF_1974	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AF_1974	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AF_1975	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AF_1985	PWY-5103	L-isoleucine biosynthesis III
AF_1985	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AF_2000	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AF_2001	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AF_2004	PWY-5155	&beta;-alanine biosynthesis III
AF_2006	PWY-6823	molybdenum cofactor biosynthesis
AF_2007	PWY-6167	flavin biosynthesis II (archaea)
AF_2007	PWY-6168	flavin biosynthesis III (fungi)
AF_2013	PWY-1341	phenylacetate degradation II (anaerobic)
AF_2013	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AF_2013	PWY-7716	AF_2013
AF_2017	PWY-1361	benzoyl-CoA degradation I (aerobic)
AF_2017	PWY-5109	2-methylbutanoate biosynthesis
AF_2017	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AF_2017	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AF_2017	PWY-5177	glutaryl-CoA degradation
AF_2017	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_2017	PWY-6435	4-hydroxybenzoate biosynthesis V
AF_2017	PWY-6583	pyruvate fermentation to butanol I
AF_2017	PWY-6863	pyruvate fermentation to hexanol
AF_2017	PWY-6883	pyruvate fermentation to butanol II
AF_2017	PWY-6944	androstenedione degradation
AF_2017	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AF_2017	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AF_2017	PWY-7007	methyl ketone biosynthesis
AF_2017	PWY-7046	4-coumarate degradation (anaerobic)
AF_2017	PWY-7094	fatty acid salvage
AF_2017	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AF_2017	PWY-735	jasmonic acid biosynthesis
AF_2017	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AF_2017	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AF_2017	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AF_2017	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AF_2017	PWY-7726	AF_2017
AF_2017	PWY-7778	AF_2017
AF_2017	PWY-7779	AF_2017
AF_2029	PWY-7805	AF_2029
AF_2029	PWY-7807	AF_2029
AF_2035	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AF_2037	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AF_2037	PWY-5532	adenosine nucleotides degradation IV
AF_2037	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AF_2043	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AF_2043	PWY-6148	tetrahydromethanopterin biosynthesis
AF_2043	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AF_2043	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AF_2044	PWY-5669	phosphatidylethanolamine biosynthesis I
AF_2045	PWY-5669	phosphatidylethanolamine biosynthesis I
AF_2047	PWY-3841	folate transformations II
AF_2047	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AF_2047	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AF_2047	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AF_2047	PWY-7199	pyrimidine deoxyribonucleosides salvage
AF_2047	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AF_2059	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AF_2061	PWY-5198	factor 420 biosynthesis
AF_2071	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AF_2071	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AF_2074	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AF_2074	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AF_2074	PWY-6897	thiamin salvage II
AF_2074	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AF_2074	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AF_2074	PWY-7356	thiamin salvage IV (yeast)
AF_2074	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AF_2075	PWY-6897	thiamin salvage II
AF_2075	PWY-7356	thiamin salvage IV (yeast)
AF_2075	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AF_2089	PWY-6148	tetrahydromethanopterin biosynthesis
AF_2095	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AF_2106	PWY-6167	flavin biosynthesis II (archaea)
AF_2107	PWY-6167	flavin biosynthesis II (archaea)
AF_2107	PWY-6168	flavin biosynthesis III (fungi)
AF_2128	PWY-6167	flavin biosynthesis II (archaea)
AF_2128	PWY-6168	flavin biosynthesis III (fungi)
AF_2150	PWY-6823	molybdenum cofactor biosynthesis
AF_2173	PWY-723	alkylnitronates degradation
AF_2179	PWY-6823	molybdenum cofactor biosynthesis
AF_2179	PWY-7887	AF_2179
AF_2185	PWY-5392	reductive TCA cycle II
AF_2185	PWY-5537	pyruvate fermentation to acetate V
AF_2185	PWY-5538	pyruvate fermentation to acetate VI
AF_2185	PWY-5690	TCA cycle II (plants and fungi)
AF_2185	PWY-5913	TCA cycle VI (obligate autotrophs)
AF_2185	PWY-6728	methylaspartate cycle
AF_2185	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_2185	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AF_2186	PWY-5392	reductive TCA cycle II
AF_2186	PWY-5537	pyruvate fermentation to acetate V
AF_2186	PWY-5538	pyruvate fermentation to acetate VI
AF_2186	PWY-5690	TCA cycle II (plants and fungi)
AF_2186	PWY-5913	TCA cycle VI (obligate autotrophs)
AF_2186	PWY-6728	methylaspartate cycle
AF_2186	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AF_2186	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AF_2196	PWY-5254	methanofuran biosynthesis
AF_2206	PWY-7851	AF_2206
AF_2217	PWY-4381	fatty acid biosynthesis initiation I
AF_2217	PWY-5743	3-hydroxypropanoate cycle
AF_2217	PWY-5744	glyoxylate assimilation
AF_2217	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_2217	PWY-6722	candicidin biosynthesis
AF_2218	PWY-5741	ethylmalonyl-CoA pathway
AF_2218	PWY-5743	3-hydroxypropanoate cycle
AF_2218	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_2218	PWY-6728	methylaspartate cycle
AF_2218	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AF_2218	PWY-7854	AF_2218
AF_2233	PWY-5506	methanol oxidation to formaldehyde IV
AF_2242	PWY-6123	inosine-5'-phosphate biosynthesis I
AF_2242	PWY-6124	inosine-5'-phosphate biosynthesis II
AF_2242	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AF_2242	PWY-7234	inosine-5'-phosphate biosynthesis III
AF_2250	PWY-5686	UMP biosynthesis
AF_2250	PWY-7790	AF_2250
AF_2250	PWY-7791	AF_2250
AF_2252	PWY-4983	L-citrulline-nitric oxide cycle
AF_2252	PWY-4984	urea cycle
AF_2252	PWY-5	canavanine biosynthesis
AF_2252	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AF_2252	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AF_2256	PWY-5199	factor 420 polyglutamylation
AF_2261	PWY-7285	methylwyosine biosynthesis
AF_2261	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AF_2268	PWY-5451	acetone degradation I (to methylglyoxal)
AF_2268	PWY-6588	pyruvate fermentation to acetone
AF_2268	PWY-6876	isopropanol biosynthesis
AF_2268	PWY-7466	acetone degradation III (to propane-1,2-diol)
AF_2273	PWY-1361	benzoyl-CoA degradation I (aerobic)
AF_2273	PWY-5109	2-methylbutanoate biosynthesis
AF_2273	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AF_2273	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AF_2273	PWY-5177	glutaryl-CoA degradation
AF_2273	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AF_2273	PWY-6435	4-hydroxybenzoate biosynthesis V
AF_2273	PWY-6583	pyruvate fermentation to butanol I
AF_2273	PWY-6863	pyruvate fermentation to hexanol
AF_2273	PWY-6883	pyruvate fermentation to butanol II
AF_2273	PWY-6944	androstenedione degradation
AF_2273	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AF_2273	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AF_2273	PWY-7007	methyl ketone biosynthesis
AF_2273	PWY-7046	4-coumarate degradation (anaerobic)
AF_2273	PWY-7094	fatty acid salvage
AF_2273	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AF_2273	PWY-735	jasmonic acid biosynthesis
AF_2273	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AF_2273	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AF_2273	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AF_2273	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AF_2273	PWY-7726	AF_2273
AF_2273	PWY-7778	AF_2273
AF_2273	PWY-7779	AF_2273
AF_2287	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
AF_2287	PWY-6174	mevalonate pathway II (archaea)
AF_2287	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
AF_2287	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
AF_2287	PWY-7102	bisabolene biosynthesis
AF_2287	PWY-7391	isoprene biosynthesis II (engineered)
AF_2287	PWY-7524	mevalonate pathway III (archaea)
AF_2287	PWY-7560	methylerythritol phosphate pathway II
AF_2287	PWY-922	mevalonate pathway I
AF_2288	PWY-6174	mevalonate pathway II (archaea)
AF_2288	PWY-7524	mevalonate pathway III (archaea)
AF_2289	PWY-6174	mevalonate pathway II (archaea)
AF_2289	PWY-7391	isoprene biosynthesis II (engineered)
AF_2289	PWY-922	mevalonate pathway I
AF_2301	PWY-40	putrescine biosynthesis I
AF_2301	PWY-43	putrescine biosynthesis II
AF_2301	PWY-6305	putrescine biosynthesis IV
AF_2301	PWY-6834	spermidine biosynthesis III
AF_2307	PWY-6840	homoglutathione biosynthesis
AF_2307	PWY-7255	ergothioneine biosynthesis I (bacteria)
AF_2321	PWY-6269	adenosylcobalamin salvage from cobinamide II
AF_2321	PWY-7962	AF_2321
AF_2321	PWY-7971	AF_2321
AF_2321	PWY-7972	AF_2321
AF_2323	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AF_2323	PWY-6269	adenosylcobalamin salvage from cobinamide II
AF_2323	PWY-7961	AF_2323
AF_2323	PWY-7963	AF_2323
AF_2323	PWY-7964	AF_2323
AF_2323	PWY-7965	AF_2323
AF_2323	PWY-7966	AF_2323
AF_2323	PWY-7967	AF_2323
AF_2323	PWY-7968	AF_2323
AF_2323	PWY-7969	AF_2323
AF_2323	PWY-7970	AF_2323
AF_2323	PWY-7975	AF_2323
AF_2327	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AF_2329	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AF_2373	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AF_2373	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AF_2373	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AF_2397	PWY-5372	carbon tetrachloride degradation II
AF_2397	PWY-6780	hydrogen production VI
AF_2397	PWY-7784	AF_2397
AF_2412	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AF_2415	PWY-4381	fatty acid biosynthesis initiation I
AF_2431	PWY-40	putrescine biosynthesis I
AF_2431	PWY-43	putrescine biosynthesis II
AF_2431	PWY-6305	putrescine biosynthesis IV
AF_2431	PWY-6834	spermidine biosynthesis III
