AF_0003	PF00188	Cysteine-rich secretory protein family
AF_0004	PF00005	ABC transporter
AF_0004	PF00037	4Fe-4S binding domain
AF_0004	PF04068	Possible Fer4-like domain in RNase L inhibitor, RLI
AF_0005	PF01402	Ribbon-helix-helix protein, copG family
AF_0006	PF02310	B12 binding domain
AF_0006	PF02607	B12 binding domain
AF_0007	PF01208	Uroporphyrinogen decarboxylase (URO-D)
AF_0008	PF07690	Major Facilitator Superfamily
AF_0009	PF02007	AF_0009
AF_0010	PF00111	2Fe-2S iron-sulfur cluster binding domain
AF_0010	PF14574	Domain of unknown function (DUF4445)
AF_0011	PF02310	B12 binding domain
AF_0011	PF02607	B12 binding domain
AF_0012	PF01208	Uroporphyrinogen decarboxylase (URO-D)
AF_0013	PF07690	Major Facilitator Superfamily
AF_0015	PF00474	Sodium:solute symporter family
AF_0016	PF09719	Putative redox-active protein (C_GCAxxG_C_C)
AF_0017	PF00378	Enoyl-CoA hydratase/isomerase family
AF_0017	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AF_0017	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AF_0018	PF00108	Thiolase, N-terminal domain
AF_0018	PF02803	Thiolase, C-terminal domain
AF_0019	PF01796	AF_0019
AF_0019	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
AF_0020	PF02515	CoA-transferase family III
AF_0021	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_0021	PF13426	PAS domain
AF_0022	PF02597	ThiS family
AF_0023	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
AF_0023	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
AF_0024	PF00465	Iron-containing alcohol dehydrogenase
AF_0025	PF07690	Major Facilitator Superfamily
AF_0026	PF11495	Archaeal transcriptional regulator TrmB
AF_0027	PF08734	AF_0027
AF_0028	PF05889	Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)
AF_0029	PF04430	Protein of unknown function (DUF498/DUF598)
AF_0032	PF01966	HD domain
AF_0033	PF01796	AF_0033
AF_0033	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AF_0033	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
AF_0034	PF00108	Thiolase, N-terminal domain
AF_0034	PF02803	Thiolase, C-terminal domain
AF_0035	PF01238	Phosphomannose isomerase type I
AF_0036	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
AF_0037	PF02654	AF_0037
AF_0038	PF00534	Glycosyl transferases group 1
AF_0038	PF13439	Glycosyltransferase Family 4
AF_0039	PF00535	Glycosyl transferase family 2
AF_0040	PF02516	Oligosaccharyl transferase STT3 subunit
AF_0041	PF00005	ABC transporter
AF_0042	PF01061	AF_0042
AF_0043	PF00534	Glycosyl transferases group 1
AF_0044	PF16363	AF_0044
AF_0045	PF00534	Glycosyl transferases group 1
AF_0046	PF08241	Methyltransferase domain
AF_0048	PF01364	Peptidase family C25
AF_0049	PF09861	Domain of unknown function (DUF2088)
AF_0050	PF01941	S-adenosylmethionine synthetase (AdoMet synthetase)
AF_0051	PF01546	Peptidase family M20/M25/M40
AF_0051	PF07687	Peptidase dimerisation domain
AF_0053	PF02163	Peptidase family M50
AF_0055	PF01989	Protein of unknown function DUF126
AF_0056	PF03604	DNA directed RNA polymerase, 7 kDa subunit
AF_0057	PF01780	Ribosomal L37ae protein family
AF_0058	PF03657	Uncharacterised protein family (UPF0113)
AF_0060	PF03819	MazG nucleotide pyrophosphohydrolase domain
AF_0061	PF02223	Thymidylate kinase
AF_0062	PF00571	CBS domain
AF_0065	PF01850	PIN domain
AF_0068	PF01905	CRISPR-associated negative auto-regulator DevR/Csa2
AF_0071	PF00270	DEAD/DEAH box helicase
AF_0071	PF00271	Helicase conserved C-terminal domain
AF_0071	PF01966	HD domain
AF_0072	PF01881	CRISPR associated protein Cas6
AF_0074	PF02237	Biotin protein ligase C terminal domain
AF_0074	PF03099	Biotin/lipoate A/B protein ligase family
AF_0074	PF08279	HTH domain
AF_0076	PF00037	4Fe-4S binding domain
AF_0076	PF12800	4Fe-4S binding domain
AF_0076	PF13187	4Fe-4S dicluster domain
AF_0077	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
AF_0077	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
AF_0078	PF01841	Transglutaminase-like superfamily
AF_0079	PF01629	AF_0079
AF_0080	PF00202	Aminotransferase class-III
AF_0082	PF00589	Phage integrase family
AF_0086	PF00528	Binding-protein-dependent transport system inner membrane component
AF_0087	PF00005	ABC transporter
AF_0088	PF03180	NLPA lipoprotein
AF_0089	PF00501	AMP-binding enzyme
AF_0089	PF13193	AMP-binding enzyme C-terminal domain
AF_0090	PF00753	Metallo-beta-lactamase superfamily
AF_0091	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AF_0092	PF00005	ABC transporter
AF_0093	PF00528	Binding-protein-dependent transport system inner membrane component
AF_0094	PF13531	Bacterial extracellular solute-binding protein
AF_0099	PF11848	AF_0099
AF_0100	PF03683	AF_0100
AF_0102	PF14947	Winged helix-turn-helix
AF_0103	PF02887	Pyruvate kinase, alpha/beta domain
AF_0104	PF03479	Domain of unknown function (DUF296)
AF_0106	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AF_0106	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AF_0107	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
AF_0107	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
AF_0108	PF01791	DeoC/LacD family aldolase
AF_0109	PF04032	RNAse P Rpr2/Rpp21/SNM1 subunit domain
AF_0110	PF01409	tRNA synthetases class II core domain (F)
AF_0111	PF00571	CBS domain
AF_0111	PF03444	Winged helix-turn-helix transcription repressor, HrcA DNA-binding
AF_0112	PF02146	Sir2 family
AF_0113	PF06849	Protein of unknown function (DUF1246)
AF_0113	PF06973	Domain of unknown function (DUF1297)
AF_0114	PF12840	Helix-turn-helix domain
AF_0115	PF00795	Carbon-nitrogen hydrolase
AF_0116	PF02602	Uroporphyrinogen-III synthase HemD
AF_0117	PF04055	Radical SAM superfamily
AF_0117	PF13353	4Fe-4S single cluster domain
AF_0119	PF01629	AF_0119
AF_0121	PF01629	AF_0121
AF_0122	PF01629	AF_0122
AF_0124	PF01925	AF_0124
AF_0125	PF00582	Universal stress protein family
AF_0127	PF01925	AF_0127
AF_0128	PF01402	Ribbon-helix-helix protein, copG family
AF_0129	PF04493	Endonuclease V
AF_0130	PF00850	Histone deacetylase domain
AF_0131	PF00881	Nitroreductase family
AF_0132	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
AF_0133	PF00108	Thiolase, N-terminal domain
AF_0135	PF01796	AF_0135
AF_0135	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
AF_0138	PF13610	AF_0138
AF_0139	PF01047	MarR family
AF_0140	PF08241	Methyltransferase domain
AF_0142	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
AF_0144	PF13473	Cupredoxin-like domain
AF_0147	PF04893	AF_0147
AF_0152	PF00122	E1-E2 ATPase
AF_0152	PF00702	haloacid dehalogenase-like hydrolase
AF_0153	PF06168	AF_0153
AF_0154	PF03239	AF_0154
AF_0156	PF13237	4Fe-4S dicluster domain
AF_0157	PF13247	4Fe-4S dicluster domain
AF_0159	PF00384	Molybdopterin oxidoreductase
AF_0159	PF01568	Molydopterin dinucleotide binding domain
AF_0160	PF02613	Nitrate reductase delta subunit
AF_0161	PF00994	Probable molybdopterin binding domain
AF_0161	PF03453	MoeA N-terminal region (domain I and II)
AF_0163	PF07853	AF_0163
AF_0164	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AF_0164	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AF_0165	PF01206	Sulfurtransferase TusA
AF_0166	PF13370	4Fe-4S single cluster domain
AF_0167	PF00258	Flavodoxin
AF_0168	PF12840	Helix-turn-helix domain
AF_0169	PF08984	Domain of unknown function (DUF1858)
AF_0170	PF01814	Hemerythrin HHE cation binding domain
AF_0170	PF04282	AF_0170
AF_0170	PF13596	PAS domain
AF_0171	PF00174	Oxidoreductase molybdopterin binding domain
AF_0173	PF02613	Nitrate reductase delta subunit
AF_0174	PF03916	AF_0174
AF_0175	PF12800	4Fe-4S binding domain
AF_0175	PF13247	4Fe-4S dicluster domain
AF_0176	PF00384	Molybdopterin oxidoreductase
AF_0176	PF01568	Molydopterin dinucleotide binding domain
AF_0176	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AF_0177	PF02663	FmdE, Molybdenum formylmethanofuran dehydrogenase operon
AF_0178	PF01629	AF_0178
AF_0180	PF02596	AF_0180
AF_0181	PF05889	Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)
AF_0183	PF13686	DsrE/DsrF/DrsH-like family
AF_0185	PF01592	NifU-like N terminal domain
AF_0186	PF00266	Aminotransferase class-V
AF_0187	PF02635	DsrE/DsrF-like family
AF_0188	PF01206	Sulfurtransferase TusA
AF_0190	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AF_0192	PF00702	haloacid dehalogenase-like hydrolase
AF_0196	PF00501	AMP-binding enzyme
AF_0196	PF13193	AMP-binding enzyme C-terminal domain
AF_0197	PF00501	AMP-binding enzyme
AF_0197	PF16177	AF_0197
AF_0198	PF01575	MaoC like domain
AF_0199	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_0199	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_0199	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_0200	PF00501	AMP-binding enzyme
AF_0202	PF00108	Thiolase, N-terminal domain
AF_0203	PF01796	AF_0203
AF_0203	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
AF_0204	PF01976	AF_0204
AF_0205	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
AF_0206	PF10447	Exosome component EXOSC1/CSL4
AF_0206	PF14382	Exosome complex exonuclease RRP4 N-terminal region
AF_0207	PF13656	RNA polymerase Rpb3/Rpb11 dimerisation domain
AF_0208	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_0208	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AF_0209	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
AF_0210	PF09843	Predicted membrane protein (DUF2070)
AF_0211	PF00571	CBS domain
AF_0212	PF00815	Histidinol dehydrogenase
AF_0213	PF01978	Sugar-specific transcriptional regulator TrmB
AF_0215	PF01849	NAC domain
AF_0216	PF08704	tRNA methyltransferase complex GCD14 subunit
AF_0217	PF00999	Sodium/hydrogen exchanger family
AF_0218	PF02080	TrkA-C domain
AF_0218	PF02254	TrkA-N domain
AF_0219	PF00682	HMGL-like
AF_0219	PF08502	LeuA allosteric (dimerisation) domain
AF_0220	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
AF_0220	PF02785	Biotin carboxylase C-terminal domain
AF_0220	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AF_0221	PF00005	ABC transporter
AF_0222	PF00005	ABC transporter
AF_0222	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AF_0223	PF13458	Periplasmic binding protein
AF_0224	PF02653	AF_0224
AF_0225	PF02653	AF_0225
AF_0226	PF00881	Nitroreductase family
AF_0227	PF00800	Prephenate dehydratase
AF_0227	PF01817	Chorismate mutase type II
AF_0227	PF01842	ACT domain
AF_0227	PF02153	Prephenate dehydrogenase
AF_0228	PF01487	Type I 3-dehydroquinase
AF_0229	PF01959	AF_0229
AF_0230	PF01791	DeoC/LacD family aldolase
AF_0231	PF00497	Bacterial extracellular solute-binding proteins, family 3
AF_0232	PF00528	Binding-protein-dependent transport system inner membrane component
AF_0234	PF00753	Metallo-beta-lactamase superfamily
AF_0235	PF01435	Peptidase family M48
AF_0237	PF00474	Sodium:solute symporter family
AF_0238	PF01472	PUA domain
AF_0238	PF01509	TruB family pseudouridylate synthase (N terminal domain)
AF_0238	PF08068	DKCLD (NUC011) domain
AF_0238	PF16198	AF_0238
AF_0239	PF00156	Phosphoribosyl transferase domain
AF_0240	PF01979	Amidohydrolase family
AF_0240	PF13382	Adenine deaminase C-terminal domain
AF_0241	PF01980	Uncharacterised protein family UPF0066
AF_0242	PF00483	Nucleotidyl transferase
AF_0243	PF04055	Radical SAM superfamily
AF_0244	PF09079	CDC6, C terminal
AF_0244	PF13401	AAA domain
AF_0245	PF02742	Iron dependent repressor, metal binding and dimerisation domain
AF_0245	PF04023	FeoA domain
AF_0246	PF02421	Ferrous iron transport protein B
AF_0246	PF07664	AF_0246
AF_0246	PF07670	Nucleoside recognition
AF_0247	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
AF_0248	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AF_0251	PF01699	Sodium/calcium exchanger protein
AF_0252	PF00117	Glutamine amidotransferase class-I
AF_0252	PF06418	CTP synthase N-terminus
AF_0253	PF00958	GMP synthase C terminal domain
AF_0253	PF02540	NAD synthase
AF_0254	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AF_0254	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_0256	PF06849	Protein of unknown function (DUF1246)
AF_0256	PF06973	Domain of unknown function (DUF1297)
AF_0259	PF01909	Nucleotidyltransferase domain
AF_0260	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AF_0260	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
AF_0261	PF04165	AF_0261
AF_0262	PF00501	AMP-binding enzyme
AF_0262	PF13193	AMP-binding enzyme C-terminal domain
AF_0263	PF01066	CDP-alcohol phosphatidyltransferase
AF_0263	PF12804	MobA-like NTP transferase domain
AF_0264	PF00752	XPG N-terminal domain
AF_0264	PF00867	XPG I-region
AF_0265	PF00994	Probable molybdopterin binding domain
AF_0266	PF00892	EamA-like transporter family
AF_0267	PF03417	Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
AF_0270	PF00578	AhpC/TSA family
AF_0270	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AF_0271	PF00037	4Fe-4S binding domain
AF_0271	PF02754	AF_0271
AF_0272	PF07849	AF_0272
AF_0273	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_0273	PF13510	2Fe-2S iron-sulfur cluster binding domain
AF_0274	PF01266	FAD dependent oxidoreductase
AF_0275	PF05048	Periplasmic copper-binding protein (NosD)
AF_0275	PF10342	AF_0275
AF_0276	PF02277	Phosphoribosyltransferase
AF_0277	PF08447	PAS fold
AF_0277	PF08448	PAS fold
AF_0277	PF13188	PAS domain
AF_0278	PF09853	AF_0278
AF_0280	PF01938	TRAM domain
AF_0282	PF04475	AF_0282
AF_0283	PF00108	Thiolase, N-terminal domain
AF_0283	PF02803	Thiolase, C-terminal domain
AF_0284	PF01796	AF_0284
AF_0284	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
AF_0285	PF00378	Enoyl-CoA hydratase/isomerase family
AF_0285	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AF_0285	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AF_0286	PF01012	Electron transfer flavoprotein domain
AF_0287	PF00766	Electron transfer flavoprotein FAD-binding domain
AF_0287	PF01012	Electron transfer flavoprotein domain
AF_0288	PF01583	Adenylylsulphate kinase
AF_0289	PF01061	AF_0289
AF_0290	PF00005	ABC transporter
AF_0293	PF01850	PIN domain
AF_0296	PF13470	AF_0296
AF_0298	PF05168	HEPN domain
AF_0299	PF01909	Nucleotidyltransferase domain
AF_0300	PF01850	PIN domain
AF_0301	PF10047	AF_0301
AF_0302	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AF_0302	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AF_0305	PF09853	AF_0305
AF_0309	PF00665	Integrase core domain
AF_0309	PF13518	Helix-turn-helix domain
AF_0312	PF13578	Methyltransferase domain
AF_0313	PF01850	PIN domain
AF_0314	PF01954	Protein of unknown function DUF104
AF_0315	PF01850	PIN domain
AF_0316	PF01954	Protein of unknown function DUF104
AF_0317	PF01850	PIN domain
AF_0318	PF01850	PIN domain
AF_0319	PF01954	Protein of unknown function DUF104
AF_0320	PF01850	PIN domain
AF_0321	PF00535	Glycosyl transferase family 2
AF_0322	PF00535	Glycosyl transferase family 2
AF_0324	PF16363	AF_0324
AF_0325	PF00483	Nucleotidyl transferase
AF_0327	PF00534	Glycosyl transferases group 1
AF_0327	PF13439	Glycosyltransferase Family 4
AF_0328	PF00535	Glycosyl transferase family 2
AF_0329	PF02516	Oligosaccharyl transferase STT3 subunit
AF_0330	PF07998	Peptidase family M54
AF_0331	PF01963	AF_0331
AF_0332	PF00571	CBS domain
AF_0332	PF02163	Peptidase family M50
AF_0333	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
AF_0333	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
AF_0335	PF00705	Proliferating cell nuclear antigen, N-terminal domain
AF_0335	PF02747	Proliferating cell nuclear antigen, C-terminal domain
AF_0336	PF04104	Eukaryotic and archaeal DNA primase, large subunit
AF_0337	PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
AF_0338	PF00437	Type II/IV secretion system protein
AF_0339	PF00465	Iron-containing alcohol dehydrogenase
AF_0340	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
AF_0340	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
AF_0343	PF03358	NADPH-dependent FMN reductase
AF_0344	PF01880	Desulfoferrodoxin
AF_0345	PF14542	GCN5-related N-acetyl-transferase
AF_0346	PF00403	Heavy-metal-associated domain
AF_0347	PF03595	Voltage-dependent anion channel
AF_0348	PF02627	Carboxymuconolactone decarboxylase family
AF_0349	PF00582	Universal stress protein family
AF_0350	PF01925	AF_0350
AF_0351	PF06745	KaiC
AF_0354	PF06745	KaiC
AF_0355	PF12838	4Fe-4S dicluster domain
AF_0356	PF00294	pfkB family carbohydrate kinase
AF_0357	PF05626	AF_0357
AF_0358	PF04851	Type III restriction enzyme, res subunit
AF_0358	PF16203	AF_0358
AF_0359	PF05239	PRC-barrel domain
AF_0360	PF07758	AF_0360
AF_0361	PF01370	NAD dependent epimerase/dehydratase family
AF_0362	PF01423	LSM domain
AF_0363	PF01047	MarR family
AF_0364	PF01078	Magnesium chelatase, subunit ChlI
AF_0364	PF05362	Lon protease (S16) C-terminal proteolytic domain
AF_0364	PF13654	AAA domain
AF_0365	PF01402	Ribbon-helix-helix protein, copG family
AF_0366	PF00501	AMP-binding enzyme
AF_0366	PF13193	AMP-binding enzyme C-terminal domain
AF_0366	PF16177	AF_0366
AF_0367	PF07690	Major Facilitator Superfamily
AF_0368	PF10047	AF_0368
AF_0370	PF01008	Initiation factor 2 subunit family
AF_0372	PF02634	FdhD/NarQ family
AF_0373	PF00352	Transcription factor TFIID (or TATA-binding protein, TBP)
AF_0374	PF13242	HAD-hyrolase-like
AF_0374	PF13344	Haloacid dehalogenase-like hydrolase
AF_0376	PF03599	CO dehydrogenase/acetyl-CoA synthase delta subunit
AF_0376	PF04060	Putative Fe-S cluster
AF_0377	PF03599	CO dehydrogenase/acetyl-CoA synthase delta subunit
AF_0378	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AF_0379	PF03598	CO dehydrogenase/acetyl-CoA synthase complex beta subunit
AF_0380	PF02516	Oligosaccharyl transferase STT3 subunit
AF_0381	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AF_0383	PF01986	AF_0383
AF_0384	PF04473	Transglutaminase-like domain
AF_0385	PF17146	AF_0385
AF_0386	PF00156	Phosphoribosyl transferase domain
AF_0387	PF00535	Glycosyl transferase family 2
AF_0388	PF04055	Radical SAM superfamily
AF_0389	PF02621	Menaquinone biosynthesis
AF_0390	PF04055	Radical SAM superfamily
AF_0391	PF10050	AF_0391
AF_0392	PF09847	AF_0392
AF_0393	PF00005	ABC transporter
AF_0394	PF01565	FAD binding domain
AF_0394	PF02913	FAD linked oxidases, C-terminal domain
AF_0395	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AF_0395	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_0396	PF01022	Bacterial regulatory protein, arsR family
AF_0396	PF08350	AF_0396
AF_0400	PF00581	Rhodanese-like domain
AF_0400	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AF_0400	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_0401	PF00294	pfkB family carbohydrate kinase
AF_0403	PF01884	PcrB family
AF_0404	PF01040	UbiA prenyltransferase family
AF_0406	PF01885	RNA 2'-phosphotransferase, Tpt1 / KptA family
AF_0407	PF04407	AF_0407
AF_0409	PF00155	Aminotransferase class I and II
AF_0410	PF00989	PAS fold
AF_0410	PF08448	PAS fold
AF_0410	PF13188	PAS domain
AF_0410	PF13426	PAS domain
AF_0411	PF01406	tRNA synthetases class I (C) catalytic domain
AF_0411	PF09190	DALR domain
AF_0412	PF04307	AF_0412
AF_0413	PF08735	AF_0413
AF_0415	PF11655	AF_0415
AF_0416	PF11655	AF_0416
AF_0417	PF11655	AF_0417
AF_0419	PF03437	BtpA family
AF_0420	PF04457	AF_0420
AF_0421	PF09824	AF_0421
AF_0422	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AF_0423	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AF_0423	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AF_0424	PF00037	4Fe-4S binding domain
AF_0424	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AF_0424	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AF_0425	PF08679	Dissimilatory sulfite reductase D (DsrD)
AF_0426	PF04467	AF_0426
AF_0427	PF13237	4Fe-4S dicluster domain
AF_0428	PF06858	Nucleolar GTP-binding protein 1 (NOG1)
AF_0429	PF00891	O-methyltransferase
AF_0430	PF00005	ABC transporter
AF_0431	PF01032	FecCD transport family
AF_0432	PF01497	Periplasmic binding protein
AF_0433	PF01980	Uncharacterised protein family UPF0066
AF_0433	PF02663	FmdE, Molybdenum formylmethanofuran dehydrogenase operon
AF_0434	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AF_0434	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AF_0435	PF00378	Enoyl-CoA hydratase/isomerase family
AF_0436	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_0436	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_0436	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_0437	PF01796	AF_0437
AF_0437	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
AF_0438	PF00108	Thiolase, N-terminal domain
AF_0438	PF02803	Thiolase, C-terminal domain
AF_0439	PF13412	Winged helix-turn-helix DNA-binding
AF_0440	PF01242	6-pyruvoyl tetrahydropterin synthase
AF_0441	PF04055	Radical SAM superfamily
AF_0441	PF13353	4Fe-4S single cluster domain
AF_0442	PF06508	Queuosine biosynthesis protein QueC
AF_0444	PF08282	haloacid dehalogenase-like hydrolase
AF_0445	PF03692	AF_0445
AF_0446	PF03168	Late embryogenesis abundant protein
AF_0447	PF03168	Late embryogenesis abundant protein
AF_0448	PF00989	PAS fold
AF_0448	PF13185	GAF domain
AF_0448	PF13426	PAS domain
AF_0449	PF00072	Response regulator receiver domain
AF_0450	PF00989	PAS fold
AF_0450	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_0452	PF06745	KaiC
AF_0454	PF00989	PAS fold
AF_0455	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AF_0455	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_0456	PF09719	Putative redox-active protein (C_GCAxxG_C_C)
AF_0457	PF02036	SCP-2 sterol transfer family
AF_0458	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AF_0458	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AF_0458	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AF_0458	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AF_0459	PF03176	MMPL family
AF_0460	PF01886	AF_0460
AF_0461	PF01887	S-adenosyl-l-methionine hydroxide adenosyltransferase
AF_0462	PF01889	AF_0462
AF_0463	PF00037	4Fe-4S binding domain
AF_0463	PF12800	4Fe-4S binding domain
AF_0463	PF13237	4Fe-4S dicluster domain
AF_0464	PF01494	FAD binding domain
AF_0465	PF00521	DNA gyrase/topoisomerase IV, subunit A
AF_0465	PF03989	DNA gyrase C-terminal domain, beta-propeller
AF_0466	PF06808	AF_0466
AF_0467	PF16868	AF_0467
AF_0468	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AF_0469	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
AF_0469	PF17147	AF_0469
AF_0470	PF00037	4Fe-4S binding domain
AF_0471	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
AF_0472	PF01895	PhoU domain
AF_0472	PF04014	Antidote-toxin recognition MazE
AF_0473	PF00122	E1-E2 ATPase
AF_0473	PF00403	Heavy-metal-associated domain
AF_0473	PF00702	haloacid dehalogenase-like hydrolase
AF_0474	PF08394	AF_0474
AF_0474	PF13412	Winged helix-turn-helix DNA-binding
AF_0475	PF01758	Sodium Bile acid symporter family
AF_0476	PF04014	Antidote-toxin recognition MazE
AF_0477	PF00004	ATPase family associated with various cellular activities (AAA)
AF_0478	PF12706	Beta-lactamase superfamily domain
AF_0479	PF01968	Hydantoinase/oxoprolinase
AF_0480	PF00596	Class II Aldolase and Adducin N-terminal domain
AF_0481	PF00227	Proteasome subunit
AF_0482	PF07521	RNA-metabolising metallo-beta-lactamase
AF_0482	PF10996	Beta-Casp domain
AF_0482	PF16661	AF_0482
AF_0482	PF17214	AF_0482
AF_0484	PF00925	GTP cyclohydrolase II
AF_0484	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AF_0485	PF09876	AF_0485
AF_0486	PF03692	AF_0486
AF_0487	PF01804	Penicillin amidase
AF_0489	PF01900	Rpp14/Pop5 family
AF_0490	PF00227	Proteasome subunit
AF_0490	PF10584	Proteasome subunit A N-terminal signature
AF_0491	PF01172	Shwachman-Bodian-Diamond syndrome (SBDS) protein
AF_0491	PF09377	SBDS protein C-terminal domain
AF_0492	PF00575	S1 RNA binding domain
AF_0492	PF14382	Exosome complex exonuclease RRP4 N-terminal region
AF_0492	PF15985	AF_0492
AF_0493	PF01138	3' exoribonuclease family, domain 1
AF_0493	PF03725	3' exoribonuclease family, domain 2
AF_0494	PF01138	3' exoribonuclease family, domain 1
AF_0494	PF03725	3' exoribonuclease family, domain 2
AF_0496	PF04893	AF_0496
AF_0497	PF00136	DNA polymerase family B
AF_0497	PF03104	DNA polymerase family B, exonuclease domain
AF_0498	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_0499	PF13247	4Fe-4S dicluster domain
AF_0500	PF03916	AF_0500
AF_0501	PF02665	Nitrate reductase gamma subunit
AF_0502	PF02754	AF_0502
AF_0502	PF13183	4Fe-4S dicluster domain
AF_0505	PF02811	PHP domain
AF_0505	PF13263	PHP-associated
AF_0506	PF02754	AF_0506
AF_0506	PF13534	4Fe-4S dicluster domain
AF_0507	PF01565	FAD binding domain
AF_0508	PF01680	SOR/SNZ family
AF_0508	PF05690	Thiazole biosynthesis protein ThiG
AF_0509	PF01174	SNO glutamine amidotransferase family
AF_0510	PF00892	EamA-like transporter family
AF_0511	PF01092	Ribosomal protein S6e
AF_0512	PF08241	Methyltransferase domain
AF_0514	PF01738	Dienelactone hydrolase family
AF_0515	PF13192	Thioredoxin domain
AF_0517	PF00493	MCM2/3/5 family
AF_0517	PF17207	AF_0517
AF_0518	PF06745	KaiC
AF_0519	PF08617	Kinase binding protein CGI-121
AF_0520	PF00288	GHMP kinases N terminal domain
AF_0521	PF00583	Acetyltransferase (GNAT) family
AF_0522	PF01546	Peptidase family M20/M25/M40
AF_0522	PF07687	Peptidase dimerisation domain
AF_0524	PF07786	AF_0524
AF_0525	PF09754	PAC2 family
AF_0526	PF04135	Nucleolar RNA-binding protein, Nop10p family
AF_0527	PF00575	S1 RNA binding domain
AF_0527	PF07541	Eukaryotic translation initiation factor 2 alpha subunit
AF_0528	PF00175	Oxidoreductase NAD-binding domain
AF_0528	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
AF_0529	PF01978	Sugar-specific transcriptional regulator TrmB
AF_0530	PF00204	DNA gyrase B
AF_0530	PF00986	DNA gyrase B subunit, carboxyl terminus
AF_0530	PF01751	Toprim domain
AF_0531	PF00899	ThiF family
AF_0532	PF00753	Metallo-beta-lactamase superfamily
AF_0532	PF07521	RNA-metabolising metallo-beta-lactamase
AF_0532	PF10996	Beta-Casp domain
AF_0533	PF12850	Calcineurin-like phosphoesterase superfamily domain
AF_0534	PF00753	Metallo-beta-lactamase superfamily
AF_0535	PF00091	Tubulin/FtsZ family, GTPase domain
AF_0535	PF12327	FtsZ family, C-terminal domain
AF_0537	PF00467	KOW motif
AF_0537	PF03439	Early transcription elongation factor of RNA pol II, NGN section
AF_0538	PF00298	Ribosomal protein L11, RNA binding domain
AF_0538	PF03946	Ribosomal protein L11, N-terminal domain
AF_0539	PF03029	Conserved hypothetical ATP binding protein
AF_0543	PF02754	AF_0543
AF_0543	PF13183	4Fe-4S dicluster domain
AF_0544	PF02754	AF_0544
AF_0544	PF13183	4Fe-4S dicluster domain
AF_0545	PF02665	Nitrate reductase gamma subunit
AF_0546	PF02665	Nitrate reductase gamma subunit
AF_0547	PF02754	AF_0547
AF_0547	PF13183	4Fe-4S dicluster domain
AF_0548	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AF_0548	PF03129	Anticodon binding domain
AF_0548	PF08915	Archaea-specific editing domain of threonyl-tRNA synthetase
AF_0550	PF01979	Amidohydrolase family
AF_0551	PF00291	Pyridoxal-phosphate dependent enzyme
AF_0552	PF02597	ThiS family
AF_0553	PF00899	ThiF family
AF_0554	PF01206	Sulfurtransferase TusA
AF_0555	PF13686	DsrE/DsrF/DrsH-like family
AF_0556	PF01206	Sulfurtransferase TusA
AF_0557	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_0558	PF07849	AF_0558
AF_0559	PF02540	NAD synthase
AF_0563	PF02635	DsrE/DsrF-like family
AF_0564	PF00266	Aminotransferase class-V
AF_0565	PF01592	NifU-like N terminal domain
AF_0567	PF00501	AMP-binding enzyme
AF_0568	PF00501	AMP-binding enzyme
AF_0569	PF01402	Ribbon-helix-helix protein, copG family
AF_0570	PF00091	Tubulin/FtsZ family, GTPase domain
AF_0570	PF12327	FtsZ family, C-terminal domain
AF_0571	PF01910	Domain of unknown function DUF77
AF_0573	PF07754	AF_0573
AF_0574	PF00736	EF-1 guanine nucleotide exchange domain
AF_0575	PF00753	Metallo-beta-lactamase superfamily
AF_0577	PF04055	Radical SAM superfamily
AF_0578	PF04389	Peptidase family M28
AF_0580	PF03372	Endonuclease/Exonuclease/phosphatase family
AF_0581	PF00535	Glycosyl transferase family 2
AF_0581	PF03706	AF_0581
AF_0582	PF10060	AF_0582
AF_0584	PF01037	AsnC family
AF_0584	PF13412	Winged helix-turn-helix DNA-binding
AF_0587	PF01472	PUA domain
AF_0587	PF01702	Queuine tRNA-ribosyltransferase
AF_0588	PF01702	Queuine tRNA-ribosyltransferase
AF_0589	PF00156	Phosphoribosyl transferase domain
AF_0589	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
AF_0590	PF01634	ATP phosphoribosyltransferase
AF_0592	PF00009	Elongation factor Tu GTP binding domain
AF_0592	PF03144	Elongation factor Tu domain 2
AF_0592	PF09173	Initiation factor eIF2 gamma, C terminal
AF_0593	PF05168	HEPN domain
AF_0594	PF01909	Nucleotidyltransferase domain
AF_0595	PF01943	AF_0595
AF_0595	PF14667	Polysaccharide biosynthesis C-terminal domain
AF_0596	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AF_0596	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
AF_0596	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AF_0597	PF03683	AF_0597
AF_0598	PF11848	AF_0598
AF_0599	PF00535	Glycosyl transferase family 2
AF_0601	PF05050	Methyltransferase FkbM domain
AF_0602	PF00534	Glycosyl transferases group 1
AF_0606	PF00534	Glycosyl transferases group 1
AF_0607	PF13692	Glycosyl transferases group 1
AF_0609	PF04255	Protein of unknown function (DUF433)
AF_0614	PF01909	Nucleotidyltransferase domain
AF_0615	PF04138	AF_0615
AF_0616	PF13231	AF_0616
AF_0617	PF00534	Glycosyl transferases group 1
AF_0617	PF13439	Glycosyltransferase Family 4
AF_0620	PF00535	Glycosyl transferase family 2
AF_0621	PF01351	Ribonuclease HII
AF_0622	PF00448	SRP54-type protein, GTPase domain
AF_0622	PF02881	SRP54-type protein, helical bundle domain
AF_0622	PF02978	Signal peptide binding domain
AF_0623	PF01068	ATP dependent DNA ligase domain
AF_0623	PF04675	DNA ligase N terminus
AF_0623	PF04679	ATP dependent DNA ligase C terminal region
AF_0624	PF01944	AF_0624
AF_0625	PF04414	D-aminoacyl-tRNA deacylase
AF_0626	PF01987	Mitochondrial biogenesis AIM24
AF_0627	PF00037	4Fe-4S binding domain
AF_0628	PF00180	Isocitrate/isopropylmalate dehydrogenase
AF_0629	PF00694	Aconitase C-terminal domain
AF_0630	PF01988	AF_0630
AF_0632	PF01106	NifU-like domain
AF_0633	PF00133	tRNA synthetases class I (I, L, M and V)
AF_0633	PF08264	Anticodon-binding domain of tRNA
AF_0635	PF16868	AF_0635
AF_0636	PF06808	AF_0636
AF_0637	PF08905	AF_0637
AF_0638	PF00005	ABC transporter
AF_0639	PF00528	Binding-protein-dependent transport system inner membrane component
AF_0640	PF13379	NMT1-like family
AF_0641	PF09853	AF_0641
AF_0643	PF01381	Helix-turn-helix
AF_0645	PF01287	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
AF_0646	PF00491	Arginase family
AF_0647	PF00180	Isocitrate/isopropylmalate dehydrogenase
AF_0648	PF13450	NAD(P)-binding Rossmann-like domain
AF_0651	PF01037	AsnC family
AF_0652	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_0652	PF09239	Topoisomerase VI B subunit, transducer
AF_0653	PF01022	Bacterial regulatory protein, arsR family
AF_0654	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_0655	PF01523	Putative modulator of DNA gyrase
AF_0656	PF01523	Putative modulator of DNA gyrase
AF_0658	PF00482	Type II secretion system (T2SS), protein F
AF_0659	PF00437	Type II/IV secretion system protein
AF_0660	PF03819	MazG nucleotide pyrophosphohydrolase domain
AF_0661	PF13534	4Fe-4S dicluster domain
AF_0662	PF02662	AF_0662
AF_0662	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_0662	PF13187	4Fe-4S dicluster domain
AF_0663	PF00037	4Fe-4S binding domain
AF_0663	PF12831	FAD dependent oxidoreductase
AF_0664	PF01629	AF_0664
AF_0665	PF01163	RIO1 family
AF_0666	PF02001	AF_0666
AF_0667	PF17253	AF_0667
AF_0668	PF02579	Dinitrogenase iron-molybdenum cofactor
AF_0669	PF01361	Tautomerase enzyme
AF_0670	PF01264	Chorismate synthase
AF_0671	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_0671	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_0671	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_0672	PF00501	AMP-binding enzyme
AF_0672	PF13193	AMP-binding enzyme C-terminal domain
AF_0673	PF13411	MerR HTH family regulatory protein
AF_0675	PF12146	Putative lysophospholipase
AF_0676	PF00406	Adenylate kinase
AF_0676	PF05191	Adenylate kinase, active site lid
AF_0677	PF00501	AMP-binding enzyme
AF_0677	PF13193	AMP-binding enzyme C-terminal domain
AF_0677	PF16177	AF_0677
AF_0678	PF13565	AF_0678
AF_0679	PF13358	DDE superfamily endonuclease
AF_0680	PF00005	ABC transporter
AF_0681	PF00890	FAD binding domain
AF_0681	PF02910	Fumarate reductase flavoprotein C-term
AF_0682	PF13085	2Fe-2S iron-sulfur cluster binding domain
AF_0682	PF13183	4Fe-4S dicluster domain
AF_0683	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
AF_0684	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
AF_0685	PF00378	Enoyl-CoA hydratase/isomerase family
AF_0687	PF00501	AMP-binding enzyme
AF_0687	PF13193	AMP-binding enzyme C-terminal domain
AF_0688	PF14697	4Fe-4S dicluster domain
AF_0689	PF09851	AF_0689
AF_0689	PF14470	Bacterial PH domain
AF_0690	PF00850	Histone deacetylase domain
AF_0691	PF00111	2Fe-2S iron-sulfur cluster binding domain
AF_0691	PF14574	Domain of unknown function (DUF4445)
AF_0696	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AF_0699	PF02272	DHHA1 domain
AF_0700	PF00696	Amino acid kinase family
AF_0700	PF01842	ACT domain
AF_0702	PF01946	Thi4 family
AF_0704	PF02475	Met-10+ like-protein
AF_0705	PF05362	Lon protease (S16) C-terminal proteolytic domain
AF_0706	PF01940	AF_0706
AF_0707	PF01255	Putative undecaprenyl diphosphate synthase
AF_0708	PF01472	PUA domain
AF_0708	PF14810	Patch-forming domain C2 of tRNA-guanine transglycosylase
AF_0710	PF00391	PEP-utilising enzyme, mobile domain
AF_0710	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
AF_0710	PF02896	PEP-utilising enzyme, TIM barrel domain
AF_0711	PF00085	Thioredoxin
AF_0713	PF00977	Histidine biosynthesis protein
AF_0714	PF01993	methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase
AF_0715	PF07885	Ion channel
AF_0717	PF02080	TrkA-C domain
AF_0717	PF02254	TrkA-N domain
AF_0720	PF01902	ATP-binding region
AF_0721	PF01903	CbiX
AF_0722	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AF_0723	PF01888	CbiD
AF_0724	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AF_0724	PF02570	Precorrin-8X methylmutase
AF_0725	PF01890	Cobalamin synthesis G C-terminus
AF_0725	PF11760	Cobalamin synthesis G N-terminal
AF_0726	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AF_0727	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AF_0728	PF01891	Cobalt uptake substrate-specific transmembrane region
AF_0729	PF02553	AF_0729
AF_0730	PF02361	Cobalt transport protein
AF_0731	PF00005	ABC transporter
AF_0732	PF08241	Methyltransferase domain
AF_0733	PF00586	AIR synthase related protein, N-terminal domain
AF_0734	PF03587	EMG1/NEP1 methyltransferase
AF_0735	PF02272	DHHA1 domain
AF_0738	PF01893	Uncharacterised protein family UPF0058
AF_0739	PF00583	Acetyltransferase (GNAT) family
AF_0741	PF01894	Uncharacterised protein family UPF0047
AF_0742	PF01896	Eukaryotic and archaeal DNA primase small subunit
AF_0743	PF01402	Ribbon-helix-helix protein, copG family
AF_0743	PF08753	NikR C terminal nickel binding domain
AF_0744	PF00009	Elongation factor Tu GTP binding domain
AF_0744	PF03143	Elongation factor Tu C-terminal domain
AF_0744	PF03144	Elongation factor Tu domain 2
AF_0744	PF04326	Divergent AAA domain
AF_0745	PF01180	Dihydroorotate dehydrogenase
AF_0747	PF01678	Diaminopimelate epimerase
AF_0748	PF01513	ATP-NAD kinase
AF_0749	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
AF_0749	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
AF_0750	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AF_0751	PF01994	tRNA ribose 2'-O-methyltransferase, aTrm56
AF_0753	PF13231	AF_0753
AF_0755	PF02665	Nitrate reductase gamma subunit
AF_0755	PF02754	AF_0755
AF_0755	PF13183	4Fe-4S dicluster domain
AF_0756	PF01368	DHH family
AF_0756	PF02833	DHHA2 domain
AF_0757	PF02002	TFIIE alpha subunit
AF_0757	PF08271	TFIIB zinc-binding
AF_0764	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
AF_0765	PF01200	Ribosomal protein S28e
AF_0766	PF01246	Ribosomal protein L24e
AF_0767	PF00334	Nucleoside diphosphate kinase
AF_0768	PF00009	Elongation factor Tu GTP binding domain
AF_0768	PF03144	Elongation factor Tu domain 2
AF_0768	PF11987	Translation-initiation factor 2
AF_0768	PF14578	Elongation factor Tu domain 4
AF_0769	PF00085	Thioredoxin
AF_0770	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_0770	PF08447	PAS fold
AF_0770	PF13426	PAS domain
AF_0771	PF01040	UbiA prenyltransferase family
AF_0775	PF06745	KaiC
AF_0776	PF00579	tRNA synthetases class I (W and Y)
AF_0777	PF01176	Translation initiation factor 1A / IF-1
AF_0778	PF06626	AF_0778
AF_0781	PF01300	Telomere recombination
AF_0781	PF03481	Putative GTP-binding controlling metal-binding
AF_0782	PF04472	Protein of unknown function (DUF552)
AF_0783	PF03367	ZPR1 zinc-finger domain
AF_0784	PF02416	mttA/Hcf106 family
AF_0785	PF04087	AF_0785
AF_0786	PF01544	CorA-like Mg2+ transporter protein
AF_0787	PF07854	AF_0787
AF_0788	PF00892	EamA-like transporter family
AF_0790	PF08241	Methyltransferase domain
AF_0791	PF01384	AF_0791
AF_0792	PF01904	Protein of unknown function DUF72
AF_0793	PF04893	AF_0793
AF_0794	PF01895	PhoU domain
AF_0794	PF04014	Antidote-toxin recognition MazE
AF_0795	PF06745	KaiC
AF_0797	PF04055	Radical SAM superfamily
AF_0798	PF04055	Radical SAM superfamily
AF_0799	PF12850	Calcineurin-like phosphoesterase superfamily domain
AF_0800	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AF_0800	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AF_0801	PF00312	Ribosomal protein S15
AF_0801	PF08069	Ribosomal S13/S15 N-terminal domain
AF_0802	PF09622	AF_0802
AF_0804	PF10049	AF_0804
AF_0805	PF04967	AF_0805
AF_0806	PF02652	AF_0806
AF_0807	PF01070	FMN-dependent dehydrogenase
AF_0808	PF01565	FAD binding domain
AF_0808	PF02913	FAD linked oxidases, C-terminal domain
AF_0809	PF02754	AF_0809
AF_0810	PF02589	Uncharacterised ACR, YkgG family COG1556
AF_0811	PF02589	Uncharacterised ACR, YkgG family COG1556
AF_0811	PF13183	4Fe-4S dicluster domain
AF_0813	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AF_0813	PF01842	ACT domain
AF_0813	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AF_0814	PF03266	NTPase
AF_0815	PF02005	N2,N2-dimethylguanosine tRNA methyltransferase
AF_0816	PF03283	AF_0816
AF_0817	PF09826	AF_0817
AF_0818	PF00708	Acylphosphatase
AF_0819	PF00977	Histidine biosynthesis protein
AF_0820	PF03819	MazG nucleotide pyrophosphohydrolase domain
AF_0821	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
AF_0821	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
AF_0822	PF00005	ABC transporter
AF_0822	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AF_0823	PF00005	ABC transporter
AF_0823	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AF_0824	PF02653	AF_0824
AF_0825	PF02653	AF_0825
AF_0826	PF00582	Universal stress protein family
AF_0827	PF13458	Periplasmic binding protein
AF_0830	PF01613	Flavin reductase like domain
AF_0831	PF02915	Rubrerythrin
AF_0832	PF02915	Rubrerythrin
AF_0833	PF01880	Desulfoferrodoxin
AF_0833	PF06397	Desulfoferrodoxin, N-terminal domain
AF_0834	PF00210	Ferritin-like domain
AF_0837	PF03463	eRF1 domain 1
AF_0837	PF03464	eRF1 domain 2
AF_0837	PF03465	eRF1 domain 3
AF_0838	PF02080	TrkA-C domain
AF_0838	PF02254	TrkA-N domain
AF_0839	PF02386	Cation transport protein
AF_0840	PF00501	AMP-binding enzyme
AF_0840	PF13193	AMP-binding enzyme C-terminal domain
AF_0841	PF00709	Adenylosuccinate synthetase
AF_0845	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_0845	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_0845	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_0846	PF00999	Sodium/hydrogen exchanger family
AF_0847	PF00571	CBS domain
AF_0848	PF00571	CBS domain
AF_0849	PF09414	RNA ligase
AF_0850	PF07318	AF_0850
AF_0851	PF01256	Carbohydrate kinase
AF_0851	PF03853	YjeF-related protein N-terminus
AF_0852	PF00464	Serine hydroxymethyltransferase
AF_0853	PF01189	NOL1/NOP2/sun family
AF_0853	PF17125	AF_0853
AF_0854	PF13636	pre-rRNA processing and ribosome biogenesis
AF_0855	PF00056	lactate/malate dehydrogenase, NAD binding domain
AF_0855	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
AF_0856	PF01972	Serine dehydrogenase proteinase
AF_0857	PF09853	AF_0857
AF_0859	PF14811	AF_0859
AF_0860	PF04981	AF_0860
AF_0861	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AF_0861	PF03737	Demethylmenaquinone methyltransferase
AF_0862	PF01139	tRNA-splicing ligase RtcB
AF_0865	PF00561	alpha/beta hydrolase fold
AF_0866	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AF_0866	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AF_0867	PF02754	AF_0867
AF_0867	PF13183	4Fe-4S dicluster domain
AF_0868	PF01565	FAD binding domain
AF_0868	PF02913	FAD linked oxidases, C-terminal domain
AF_0869	PF01906	Putative heavy-metal-binding
AF_0871	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
AF_0871	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
AF_0872	PF09889	AF_0872
AF_0873	PF00156	Phosphoribosyl transferase domain
AF_0873	PF13537	Glutamine amidotransferase domain
AF_0874	PF01907	Ribosomal protein L37e
AF_0875	PF01423	LSM domain
AF_0876	PF00149	Calcineurin-like phosphoesterase
AF_0876	PF02872	5'-nucleotidase, C-terminal domain
AF_0878	PF01973	AF_0878
AF_0879	PF02568	Thiamine biosynthesis protein (ThiI)
AF_0879	PF02926	THUMP domain
AF_0880	PF00301	Rubredoxin
AF_0882	PF00710	Asparaginase
AF_0883	PF00206	Lyase
AF_0883	PF14698	Argininosuccinate lyase C-terminal
AF_0885	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
AF_0885	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
AF_0886	PF00670	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
AF_0887	PF00005	ABC transporter
AF_0888	PF02653	AF_0888
AF_0889	PF02653	AF_0889
AF_0890	PF02608	Basic membrane protein
AF_0892	PF03807	NADP oxidoreductase coenzyme F420-dependent
AF_0893	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_0893	PF13426	PAS domain
AF_0894	PF00750	tRNA synthetases class I (R)
AF_0894	PF03485	Arginyl tRNA synthetase N terminal domain
AF_0894	PF05746	DALR anticodon binding domain
AF_0895	PF13610	AF_0895
AF_0899	PF01026	TatD related DNase
AF_0900	PF01974	tRNA intron endonuclease, catalytic C-terminal domain
AF_0900	PF02778	tRNA intron endonuclease, N-terminal domain
AF_0901	PF01931	Protein of unknown function DUF84
AF_0902	PF04055	Radical SAM superfamily
AF_0904	PF01546	Peptidase family M20/M25/M40
AF_0904	PF07687	Peptidase dimerisation domain
AF_0905	PF01751	Toprim domain
AF_0906	PF01968	Hydantoinase/oxoprolinase
AF_0906	PF05378	AF_0906
AF_0907	PF07690	Major Facilitator Superfamily
AF_0908	PF02596	AF_0908
AF_0909	PF01113	Dihydrodipicolinate reductase, N-terminus
AF_0909	PF05173	Dihydrodipicolinate reductase, C-terminus
AF_0910	PF00701	Dihydrodipicolinate synthetase family
AF_0911	PF00833	Ribosomal S17
AF_0913	PF02635	DsrE/DsrF-like family
AF_0914	PF01253	Translation initiation factor SUI1
AF_0916	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AF_0916	PF03129	Anticodon binding domain
AF_0917	PF01933	Uncharacterised protein family UPF0052
AF_0918	PF04055	Radical SAM superfamily
AF_0919	PF12850	Calcineurin-like phosphoesterase superfamily domain
AF_0920	PF00152	tRNA synthetases class II (D, K and N)
AF_0920	PF01336	OB-fold nucleic acid binding domain
AF_0921	PF01979	Amidohydrolase family
AF_0922	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
AF_0923	PF00037	4Fe-4S binding domain
AF_0925	PF01435	Peptidase family M48
AF_0926	PF03061	Thioesterase superfamily
AF_0927	PF02006	Protein of unknown function DUF137
AF_0928	PF13419	Haloacid dehalogenase-like hydrolase
AF_0929	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AF_0930	PF00994	Probable molybdopterin binding domain
AF_0930	PF03453	MoeA N-terminal region (domain I and II)
AF_0930	PF03454	MoeA C-terminal region (domain IV)
AF_0931	PF00994	Probable molybdopterin binding domain
AF_0931	PF03453	MoeA N-terminal region (domain I and II)
AF_0931	PF03454	MoeA C-terminal region (domain IV)
AF_0931	PF12727	PBP superfamily domain
AF_0932	PF13380	CoA binding domain
AF_0932	PF13549	ATP-grasp domain
AF_0932	PF13607	Succinyl-CoA ligase like flavodoxin domain
AF_0933	PF01063	Aminotransferase class IV
AF_0934	PF01842	ACT domain
AF_0935	PF00742	Homoserine dehydrogenase
AF_0935	PF03447	Homoserine dehydrogenase, NAD binding domain
AF_0936	PF01478	Type IV leader peptidase family
AF_0936	PF06847	Archaeal Peptidase A24 C-terminus Type II
AF_0937	PF00009	Elongation factor Tu GTP binding domain
AF_0937	PF03143	Elongation factor Tu C-terminal domain
AF_0937	PF03144	Elongation factor Tu domain 2
AF_0938	PF00338	Ribosomal protein S10p/S20e
AF_0939	PF12706	Beta-lactamase superfamily domain
AF_0940	PF04406	Type IIB DNA topoisomerase
AF_0941	PF14591	AF0941-like
AF_0942	PF01975	Survival protein SurE
AF_0943	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
AF_0947	PF01934	Protein of unknown function DUF86
AF_0948	PF01909	Nucleotidyltransferase domain
AF_0949	PF00120	Glutamine synthetase, catalytic domain
AF_0949	PF03951	Glutamine synthetase, beta-Grasp domain
AF_0950	PF13247	4Fe-4S dicluster domain
AF_0951	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_0952	PF00310	Glutamine amidotransferases class-II
AF_0953	PF00037	4Fe-4S binding domain
AF_0953	PF01645	Conserved region in glutamate synthase
AF_0954	PF01493	GXGXG motif
AF_0955	PF13374	Tetratricopeptide repeat
AF_0955	PF13424	Tetratricopeptide repeat
AF_0957	PF00682	HMGL-like
AF_0957	PF08502	LeuA allosteric (dimerisation) domain
AF_0958	PF00005	ABC transporter
AF_0959	PF00005	ABC transporter
AF_0960	PF02653	AF_0960
AF_0961	PF02653	AF_0961
AF_0962	PF13458	Periplasmic binding protein
AF_0963	PF00378	Enoyl-CoA hydratase/isomerase family
AF_0964	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_0964	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_0964	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_0965	PF01796	AF_0965
AF_0965	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
AF_0966	PF01796	AF_0966
AF_0966	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
AF_0967	PF00108	Thiolase, N-terminal domain
AF_0968	PF02803	Thiolase, C-terminal domain
AF_0969	PF00474	Sodium:solute symporter family
AF_0971	PF00027	Cyclic nucleotide-binding domain
AF_0971	PF00571	CBS domain
AF_0971	PF03445	AF_0971
AF_0971	PF10335	AF_0971
AF_0972	PF00929	Exonuclease
AF_0973	PF02515	CoA-transferase family III
AF_0974	PF02515	CoA-transferase family III
AF_0975	PF00501	AMP-binding enzyme
AF_0975	PF13193	AMP-binding enzyme C-terminal domain
AF_0975	PF16177	AF_0975
AF_0976	PF00501	AMP-binding enzyme
AF_0976	PF13193	AMP-binding enzyme C-terminal domain
AF_0977	PF00909	Ammonium Transporter Family
AF_0978	PF00543	Nitrogen regulatory protein P-II
AF_0979	PF00528	Binding-protein-dependent transport system inner membrane component
AF_0980	PF00528	Binding-protein-dependent transport system inner membrane component
AF_0981	PF00005	ABC transporter
AF_0982	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AF_0983	PF03379	AF_0983
AF_0984	PF00005	ABC transporter
AF_0985	PF00475	Imidazoleglycerol-phosphate dehydratase
AF_0986	PF00977	Histidine biosynthesis protein
AF_0987	PF00582	Universal stress protein family
AF_0988	PF16868	AF_0988
AF_0989	PF06808	AF_0989
AF_0990	PF02515	CoA-transferase family III
AF_0991	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_0991	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_0991	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_0993	PF08423	Rad51
AF_0993	PF14520	Helix-hairpin-helix domain
AF_0994	PF01966	HD domain
AF_0995	PF00482	Type II secretion system (T2SS), protein F
AF_0996	PF00437	Type II/IV secretion system protein
AF_0997	PF01979	Amidohydrolase family
AF_0998	PF13412	Winged helix-turn-helix DNA-binding
AF_0999	PF13412	Winged helix-turn-helix DNA-binding
AF_1000	PF02540	NAD synthase
AF_1002	PF00300	Histidine phosphatase superfamily (branch 1)
AF_1005	PF12698	ABC-2 family transporter protein
AF_1006	PF00005	ABC transporter
AF_1006	PF13732	AF_1006
AF_1007	PF13175	AAA ATPase domain
AF_1009	PF01978	Sugar-specific transcriptional regulator TrmB
AF_1010	PF13187	4Fe-4S dicluster domain
AF_1011	PF01428	AN1-like Zinc finger
AF_1011	PF01694	Rhomboid family
AF_1012	PF04055	Radical SAM superfamily
AF_1014	PF00920	Dehydratase family
AF_1017	PF02687	AF_1017
AF_1017	PF12704	MacB-like periplasmic core domain
AF_1018	PF00005	ABC transporter
AF_1020	PF01842	ACT domain
AF_1021	PF00005	ABC transporter
AF_1022	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AF_1023	PF13450	NAD(P)-binding Rossmann-like domain
AF_1024	PF00270	DEAD/DEAH box helicase
AF_1024	PF01131	DNA topoisomerase
AF_1024	PF01751	Toprim domain
AF_1025	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AF_1025	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AF_1026	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_1026	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_1026	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_1027	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
AF_1027	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
AF_1028	PF00108	Thiolase, N-terminal domain
AF_1028	PF02803	Thiolase, C-terminal domain
AF_1029	PF00501	AMP-binding enzyme
AF_1029	PF13193	AMP-binding enzyme C-terminal domain
AF_1030	PF01935	Domain of unknown function DUF87
AF_1030	PF05872	AF_1030
AF_1030	PF09378	HAS barrel domain
AF_1031	PF00149	Calcineurin-like phosphoesterase
AF_1032	PF04423	Rad50 zinc hook motif
AF_1032	PF13476	AAA domain
AF_1033	PF09376	NurA domain
AF_1034	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AF_1034	PF13426	PAS domain
AF_1035	PF00512	His Kinase A (phospho-acceptor) domain
AF_1035	PF08448	PAS fold
AF_1035	PF13188	PAS domain
AF_1036	PF08448	PAS fold
AF_1037	PF01739	CheR methyltransferase, SAM binding domain
AF_1037	PF03705	CheR methyltransferase, all-alpha domain
AF_1038	PF03975	CheD chemotactic sensory transduction
AF_1039	PF04509	CheC-like family
AF_1040	PF01584	CheW-like domain
AF_1040	PF01627	Hpt domain
AF_1040	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_1040	PF02895	Signal transducing histidine kinase, homodimeric domain
AF_1040	PF07194	P2 response regulator binding domain
AF_1041	PF00072	Response regulator receiver domain
AF_1041	PF01339	CheB methylesterase
AF_1042	PF00072	Response regulator receiver domain
AF_1043	PF04283	AF_1043
AF_1044	PF01584	CheW-like domain
AF_1045	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AF_1045	PF00989	PAS fold
AF_1045	PF13426	PAS domain
AF_1048	PF00482	Type II secretion system (T2SS), protein F
AF_1049	PF00437	Type II/IV secretion system protein
AF_1050	PF06745	KaiC
AF_1052	PF01917	AF_1052
AF_1054	PF01917	AF_1054
AF_1055	PF01917	AF_1055
AF_1056	PF04013	Putative SAM-dependent RNA methyltransferase
AF_1058	PF06133	Protein of unknown function (DUF964)
AF_1060	PF01935	Domain of unknown function DUF87
AF_1060	PF09378	HAS barrel domain
AF_1061	PF02655	ATP-grasp domain
AF_1062	PF01936	NYN domain
AF_1063	PF00072	Response regulator receiver domain
AF_1064	PF00005	ABC transporter
AF_1065	PF04266	ASCH domain
AF_1066	PF00296	Luciferase-like monooxygenase
AF_1067	PF01918	Alba
AF_1068	PF04027	Domain of unknown function (DUF371)
AF_1069	PF00474	Sodium:solute symporter family
AF_1070	PF00501	AMP-binding enzyme
AF_1070	PF14535	AMP-binding enzyme C-terminal domain
AF_1072	PF15919	AF_1072
AF_1074	PF01954	Protein of unknown function DUF104
AF_1075	PF05016	Plasmid stabilisation system protein
AF_1077	PF01850	PIN domain
AF_1079	PF01954	Protein of unknown function DUF104
AF_1084	PF01954	Protein of unknown function DUF104
AF_1085	PF01850	PIN domain
AF_1087	PF01954	Protein of unknown function DUF104
AF_1089	PF01850	PIN domain
AF_1090	PF01954	Protein of unknown function DUF104
AF_1091	PF01850	PIN domain
AF_1092	PF01954	Protein of unknown function DUF104
AF_1093	PF05016	Plasmid stabilisation system protein
AF_1095	PF01954	Protein of unknown function DUF104
AF_1096	PF07790	AF_1096
AF_1097	PF00483	Nucleotidyl transferase
AF_1097	PF01050	Mannose-6-phosphate isomerase
AF_1098	PF05683	Fumarase C-terminus
AF_1099	PF05681	AF_1099
AF_1100	PF03063	Prismane/CO dehydrogenase family
AF_1100	PF13183	4Fe-4S dicluster domain
AF_1101	PF02552	CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
AF_1103	PF04250	AF_1103
AF_1104	PF01937	Protein of unknown function DUF89
AF_1105	PF04071	AF_1105
AF_1107	PF02577	Bifunctional nuclease
AF_1108	PF00692	dUTPase
AF_1109	PF04434	AF_1109
AF_1110	PF09920	AF_1110
AF_1112	PF00814	Glycoprotease family
AF_1113	PF01599	Ribosomal protein S27a
AF_1114	PF01282	Ribosomal protein S24e
AF_1115	PF04019	AF_1115
AF_1116	PF06093	Spt4/RpoE2 zinc finger
AF_1117	PF00575	S1 RNA binding domain
AF_1117	PF03876	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
AF_1121	PF12840	Helix-turn-helix domain
AF_1122	PF00378	Enoyl-CoA hydratase/isomerase family
AF_1122	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AF_1122	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AF_1123	PF12146	Putative lysophospholipase
AF_1124	PF01575	MaoC like domain
AF_1125	PF04055	Radical SAM superfamily
AF_1125	PF13186	Iron-sulfur cluster-binding domain
AF_1125	PF13353	4Fe-4S single cluster domain
AF_1126	PF03641	Possible lysine decarboxylase
AF_1127	PF17135	AF_1127
AF_1128	PF00572	Ribosomal protein L13
AF_1129	PF00380	Ribosomal protein S9/S16
AF_1130	PF01194	RNA polymerases N / 8 kDa subunit
AF_1131	PF01192	RNA polymerase Rpb6
AF_1132	PF00113	Enolase, C-terminal TIM barrel domain
AF_1132	PF03952	Enolase, N-terminal domain
AF_1133	PF00318	Ribosomal protein S2
AF_1134	PF12146	Putative lysophospholipase
AF_1136	PF00005	ABC transporter
AF_1137	PF12679	AF_1137
AF_1138	PF10633	NPCBM-associated, NEW3 domain of alpha-galactosidase
AF_1138	PF13620	Carboxypeptidase regulatory-like domain
AF_1139	PF00005	ABC transporter
AF_1140	PF09847	AF_1140
AF_1141	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_1141	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_1141	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_1142	PF12804	MobA-like NTP transferase domain
AF_1144	PF07690	Major Facilitator Superfamily
AF_1145	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
AF_1145	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
AF_1146	PF00162	Phosphoglycerate kinase
AF_1147	PF01960	ArgJ family
AF_1148	PF01037	AsnC family
AF_1148	PF13404	AsnC-type helix-turn-helix domain
AF_1149	PF00270	DEAD/DEAH box helicase
AF_1149	PF00271	Helicase conserved C-terminal domain
AF_1149	PF08494	AF_1149
AF_1150	PF01920	Prefoldin subunit
AF_1152	PF02926	THUMP domain
AF_1153	PF00037	4Fe-4S binding domain
AF_1153	PF04015	AF_1153
AF_1155	PF12850	Calcineurin-like phosphoesterase superfamily domain
AF_1157	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
AF_1157	PF02843	Phosphoribosylglycinamide synthetase, C domain
AF_1157	PF02844	Phosphoribosylglycinamide synthetase, N domain
AF_1159	PF01496	V-type ATPase 116kDa subunit family
AF_1160	PF00137	ATP synthase subunit C
AF_1162	PF00137	ATP synthase subunit C
AF_1163	PF01991	ATP synthase (E/31 kDa) subunit
AF_1164	PF01992	ATP synthase (C/AC39) subunit
AF_1165	PF01990	ATP synthase (F/14-kDa) subunit
AF_1166	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AF_1166	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AF_1166	PF16886	AF_1166
AF_1167	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AF_1167	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AF_1168	PF01813	ATP synthase subunit D
AF_1169	PF02632	BioY family
AF_1170	PF00005	ABC transporter
AF_1172	PF06745	KaiC
AF_1174	PF02036	SCP-2 sterol transfer family
AF_1175	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_1175	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_1175	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_1176	PF06314	Acetoacetate decarboxylase (ADC)
AF_1177	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AF_1177	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AF_1178	PF12643	AF_1178
AF_1179	PF02649	Type I GTP cyclohydrolase folE2
AF_1180	PF13091	PLD-like domain
AF_1181	PF01926	50S ribosome-binding GTPase
AF_1182	PF09846	AF_1182
AF_1183	PF09845	AF_1183
AF_1184	PF00989	PAS fold
AF_1184	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_1184	PF13426	PAS domain
AF_1185	PF09383	NIL domain
AF_1185	PF12838	4Fe-4S dicluster domain
AF_1186	PF00571	CBS domain
AF_1186	PF01837	AF_1186
AF_1187	PF01428	AN1-like Zinc finger
AF_1188	PF04307	AF_1188
AF_1189	PF13894	C2H2-type zinc finger
AF_1190	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AF_1190	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AF_1191	PF00378	Enoyl-CoA hydratase/isomerase family
AF_1192	PF13380	CoA binding domain
AF_1192	PF13549	ATP-grasp domain
AF_1192	PF13607	Succinyl-CoA ligase like flavodoxin domain
AF_1193	PF00149	Calcineurin-like phosphoesterase
AF_1194	PF09999	AF_1194
AF_1195	PF00004	ATPase family associated with various cellular activities (AAA)
AF_1196	PF00296	Luciferase-like monooxygenase
AF_1197	PF00108	Thiolase, N-terminal domain
AF_1197	PF02803	Thiolase, C-terminal domain
AF_1199	PF01144	Coenzyme A transferase
AF_1200	PF04199	Putative cyclase
AF_1202	PF00037	4Fe-4S binding domain
AF_1202	PF13247	4Fe-4S dicluster domain
AF_1203	PF00384	Molybdopterin oxidoreductase
AF_1203	PF01568	Molydopterin dinucleotide binding domain
AF_1203	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AF_1205	PF00474	Sodium:solute symporter family
AF_1206	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AF_1206	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AF_1207	PF13561	Enoyl-(Acyl carrier protein) reductase
AF_1208	PF07883	Cupin domain
AF_1209	PF03807	NADP oxidoreductase coenzyme F420-dependent
AF_1210	PF05853	Prokaryotic protein of unknown function (DUF849)
AF_1211	PF13380	CoA binding domain
AF_1211	PF13549	ATP-grasp domain
AF_1211	PF13607	Succinyl-CoA ligase like flavodoxin domain
AF_1212	PF07085	DRTGG domain
AF_1212	PF13500	AAA domain
AF_1214	PF02441	Flavoprotein
AF_1215	PF00091	Tubulin/FtsZ family, GTPase domain
AF_1216	PF01921	tRNA synthetases class I (K)
AF_1217	PF04055	Radical SAM superfamily
AF_1217	PF13353	4Fe-4S single cluster domain
AF_1218	PF10826	AF_1218
AF_1219	PF01255	Putative undecaprenyl diphosphate synthase
AF_1220	PF03463	eRF1 domain 1
AF_1220	PF03464	eRF1 domain 2
AF_1220	PF03465	eRF1 domain 3
AF_1222	PF00474	Sodium:solute symporter family
AF_1223	PF00892	EamA-like transporter family
AF_1224	PF01966	HD domain
AF_1229	PF03176	MMPL family
AF_1232	PF01978	Sugar-specific transcriptional regulator TrmB
AF_1233	PF02811	PHP domain
AF_1234	PF00293	NUDIX domain
AF_1235	PF01096	Transcription factor S-II (TFIIS)
AF_1235	PF02150	RNA polymerases M/15 Kd subunit
AF_1238	PF00037	4Fe-4S binding domain
AF_1238	PF02662	AF_1238
AF_1238	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_1238	PF13187	4Fe-4S dicluster domain
AF_1239	PF12838	4Fe-4S dicluster domain
AF_1240	PF00291	Pyridoxal-phosphate dependent enzyme
AF_1241	PF00202	Aminotransferase class-III
AF_1242	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
AF_1242	PF03900	Porphobilinogen deaminase, C-terminal domain
AF_1243	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AF_1244	PF02080	TrkA-C domain
AF_1245	PF00999	Sodium/hydrogen exchanger family
AF_1246	PF07885	Ion channel
AF_1247	PF00919	Uncharacterized protein family UPF0004
AF_1247	PF01938	TRAM domain
AF_1247	PF04055	Radical SAM superfamily
AF_1248	PF04474	AF_1248
AF_1250	PF04322	AF_1250
AF_1251	PF09754	PAC2 family
AF_1252	PF00682	HMGL-like
AF_1252	PF02436	Conserved carboxylase domain
AF_1254	PF00583	Acetyltransferase (GNAT) family
AF_1255	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AF_1255	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AF_1256	PF00072	Response regulator receiver domain
AF_1257	PF01170	Putative RNA methylase family UPF0020
AF_1257	PF02926	THUMP domain
AF_1258	PF01922	SRP19 protein
AF_1259	PF00571	CBS domain
AF_1259	PF02195	ParB-like nuclease domain
AF_1260	PF13507	CobB/CobQ-like glutamine amidotransferase domain
AF_1261	PF00501	AMP-binding enzyme
AF_1261	PF13193	AMP-binding enzyme C-terminal domain
AF_1262	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AF_1262	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_1263	PF14697	4Fe-4S dicluster domain
AF_1264	PF12840	Helix-turn-helix domain
AF_1265	PF13483	Beta-lactamase superfamily domain
AF_1270	PF01022	Bacterial regulatory protein, arsR family
AF_1271	PF00731	AIR carboxylase
AF_1272	PF01259	SAICAR synthetase
AF_1273	PF00117	Glutamine amidotransferase class-I
AF_1273	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
AF_1274	PF02142	MGS-like domain
AF_1274	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AF_1274	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AF_1275	PF00731	AIR carboxylase
AF_1277	PF00117	Glutamine amidotransferase class-I
AF_1278	PF04455	LOR/SDH bifunctional enzyme conserved region
AF_1279	PF01261	Xylose isomerase-like TIM barrel
AF_1280	PF00696	Amino acid kinase family
AF_1281	PF01965	DJ-1/PfpI family
AF_1284	PF00085	Thioredoxin
AF_1285	PF00004	ATPase family associated with various cellular activities (AAA)
AF_1286	PF00850	Histone deacetylase domain
AF_1287	PF00501	AMP-binding enzyme
AF_1287	PF13193	AMP-binding enzyme C-terminal domain
AF_1289	PF03308	ArgK protein
AF_1290	PF01923	Cobalamin adenosyltransferase
AF_1291	PF00108	Thiolase, N-terminal domain
AF_1291	PF02803	Thiolase, C-terminal domain
AF_1292	PF01796	AF_1292
AF_1292	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
AF_1293	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_1293	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_1293	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_1294	PF01988	AF_1294
AF_1295	PF10865	AF_1295
AF_1296	PF00011	Hsp20/alpha crystallin family
AF_1297	PF00004	ATPase family associated with various cellular activities (AAA)
AF_1297	PF02359	Cell division protein 48 (CDC48), N-terminal domain
AF_1297	PF02933	Cell division protein 48 (CDC48), domain 2
AF_1297	PF09336	Vps4 C terminal oligomerisation domain
AF_1298	PF01022	Bacterial regulatory protein, arsR family
AF_1298	PF01978	Sugar-specific transcriptional regulator TrmB
AF_1299	PF00382	Transcription factor TFIIB repeat
AF_1299	PF08271	TFIIB zinc-binding
AF_1300	PF00005	ABC transporter
AF_1304	PF00121	Triosephosphate isomerase
AF_1305	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AF_1305	PF08714	Formaldehyde-activating enzyme (Fae)
AF_1306	PF04015	AF_1306
AF_1307	PF02593	AF_1307
AF_1308	PF02223	Thymidylate kinase
AF_1310	PF00665	Integrase core domain
AF_1310	PF13518	Helix-turn-helix domain
AF_1311	PF04055	Radical SAM superfamily
AF_1312	PF14285	AF_1312
AF_1312	PF17131	AF_1312
AF_1313	PF02596	AF_1313
AF_1315	PF02515	CoA-transferase family III
AF_1316	PF00291	Pyridoxal-phosphate dependent enzyme
AF_1318	PF02171	Piwi domain
AF_1320	PF00117	Glutamine amidotransferase class-I
AF_1321	PF01171	PP-loop family
AF_1322	PF02163	Peptidase family M50
AF_1322	PF13180	PDZ domain
AF_1323	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AF_1324	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AF_1324	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AF_1325	PF07690	Major Facilitator Superfamily
AF_1326	PF01926	50S ribosome-binding GTPase
AF_1328	PF01266	FAD dependent oxidoreductase
AF_1328	PF04324	BFD-like [2Fe-2S] binding domain
AF_1330	PF04055	Radical SAM superfamily
AF_1333	PF00935	Ribosomal protein L44
AF_1334	PF01667	Ribosomal protein S27
AF_1336	PF03186	AF_1336
AF_1337	PF00575	S1 RNA binding domain
AF_1337	PF01336	OB-fold nucleic acid binding domain
AF_1338	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AF_1338	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AF_1339	PF00252	Ribosomal protein L16p/L10e
AF_1340	PF00285	Citrate synthase
AF_1341	PF00591	Glycosyl transferase family, a/b domain
AF_1341	PF01568	Molydopterin dinucleotide binding domain
AF_1341	PF02885	Glycosyl transferase family, helical bundle domain
AF_1341	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
AF_1342	PF00591	Glycosyl transferase family, a/b domain
AF_1342	PF02885	Glycosyl transferase family, helical bundle domain
AF_1342	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
AF_1343	PF00753	Metallo-beta-lactamase superfamily
AF_1344	PF00902	Sec-independent protein translocase protein (TatC)
AF_1345	PF08827	Domain of unknown function (DUF1805)
AF_1346	PF04894	AF_1346
AF_1347	PF04895	AF_1347
AF_1349	PF00301	Rubredoxin
AF_1350	PF00753	Metallo-beta-lactamase superfamily
AF_1351	PF13565	AF_1351
AF_1352	PF13358	DDE superfamily endonuclease
AF_1354	PF13462	Thioredoxin
AF_1355	PF01895	PhoU domain
AF_1355	PF04014	Antidote-toxin recognition MazE
AF_1356	PF12849	PBP superfamily domain
AF_1357	PF00528	Binding-protein-dependent transport system inner membrane component
AF_1358	PF00528	Binding-protein-dependent transport system inner membrane component
AF_1359	PF00005	ABC transporter
AF_1360	PF01895	PhoU domain
AF_1361	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AF_1363	PF09868	AF_1363
AF_1364	PF01926	50S ribosome-binding GTPase
AF_1364	PF02824	TGS domain
AF_1364	PF08438	GTPase of unknown function C-terminal
AF_1365	PF00586	AIR synthase related protein, N-terminal domain
AF_1365	PF02769	AIR synthase related protein, C-terminal domain
AF_1366	PF00708	Acylphosphatase
AF_1366	PF01300	Telomere recombination
AF_1366	PF07503	HypF finger
AF_1367	PF01155	Hydrogenase expression/synthesis hypA family
AF_1368	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AF_1369	PF01455	HupF/HypC family
AF_1370	PF01924	Hydrogenase formation hypA family
AF_1371	PF01750	Hydrogenase maturation protease
AF_1372	PF00374	Nickel-dependent hydrogenase
AF_1373	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
AF_1374	PF02662	AF_1374
AF_1375	PF02754	AF_1375
AF_1376	PF13534	4Fe-4S dicluster domain
AF_1377	PF12831	FAD dependent oxidoreductase
AF_1377	PF12838	4Fe-4S dicluster domain
AF_1377	PF14697	4Fe-4S dicluster domain
AF_1378	PF01750	Hydrogenase maturation protease
AF_1379	PF01292	Prokaryotic cytochrome b561
AF_1380	PF00374	Nickel-dependent hydrogenase
AF_1381	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
AF_1381	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
AF_1383	PF00665	Integrase core domain
AF_1383	PF13518	Helix-turn-helix domain
AF_1384	PF00072	Response regulator receiver domain
AF_1385	PF01850	PIN domain
AF_1388	PF13086	AAA domain
AF_1388	PF13087	AAA domain
AF_1389	PF00005	ABC transporter
AF_1390	PF00005	ABC transporter
AF_1390	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AF_1391	PF13458	Periplasmic binding protein
AF_1392	PF02653	AF_1392
AF_1393	PF02653	AF_1393
AF_1395	PF01877	RNA binding
AF_1395	PF13207	AAA domain
AF_1396	PF01947	Protein of unknown function (DUF98)
AF_1398	PF00801	PKD domain
AF_1398	PF13243	Prenyltransferase-like
AF_1398	PF14478	Domain of unknown function (DUF4430)
AF_1399	PF13360	PQQ-like domain
AF_1400	PF01955	AF_1400
AF_1401	PF00005	ABC transporter
AF_1402	PF01032	FecCD transport family
AF_1403	PF01842	ACT domain
AF_1404	PF01037	AsnC family
AF_1405	PF01472	PUA domain
AF_1406	PF04851	Type III restriction enzyme, res subunit
AF_1409	PF01555	DNA methylase
AF_1410	PF00665	Integrase core domain
AF_1410	PF13518	Helix-turn-helix domain
AF_1412	PF05048	Periplasmic copper-binding protein (NosD)
AF_1413	PF05048	Periplasmic copper-binding protein (NosD)
AF_1414	PF00809	Pterin binding enzyme
AF_1414	PF14251	AF_1414
AF_1415	PF00571	CBS domain
AF_1415	PF00654	Voltage gated chloride channel
AF_1416	PF00885	6,7-dimethyl-8-ribityllumazine synthase
AF_1417	PF00266	Aminotransferase class-V
AF_1418	PF01467	Cytidylyltransferase
AF_1419	PF00156	Phosphoribosyl transferase domain
AF_1419	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
AF_1420	PF01145	SPFH domain / Band 7 family
AF_1421	PF03699	AF_1421
AF_1422	PF01177	Asp/Glu/Hydantoin racemase
AF_1423	PF01966	HD domain
AF_1424	PF03483	B3/4 domain
AF_1424	PF03484	tRNA synthetase B5 domain
AF_1425	PF01676	Metalloenzyme superfamily
AF_1425	PF10143	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
AF_1426	PF00230	Major intrinsic protein
AF_1427	PF09947	AF_1427
AF_1428	PF09959	AF_1428
AF_1429	PF04967	AF_1429
AF_1430	PF01020	Ribosomal L40e family
AF_1431	PF01927	AF_1431
AF_1432	PF13023	HD domain
AF_1433	PF01949	Protein of unknown function DUF99
AF_1434	PF13886	AF_1434
AF_1435	PF01137	RNA 3'-terminal phosphate cyclase
AF_1435	PF05189	RNA 3'-terminal phosphate cyclase (RTC), insert domain
AF_1436	PF03358	NADPH-dependent FMN reductase
AF_1438	PF03692	AF_1438
AF_1439	PF00733	Asparagine synthase
AF_1440	PF02637	GatB domain
AF_1440	PF02934	GatB/GatE catalytic domain
AF_1440	PF02938	GAD domain
AF_1442	PF01950	Fructose-1,6-bisphosphatase
AF_1443	PF06745	KaiC
AF_1444	PF13519	von Willebrand factor type A domain
AF_1445	PF01078	Magnesium chelatase, subunit ChlI
AF_1445	PF07728	AAA domain (dynein-related subfamily)
AF_1448	PF01037	AsnC family
AF_1448	PF13412	Winged helix-turn-helix DNA-binding
AF_1449	PF01228	Glycine radical
AF_1449	PF02901	Pyruvate formate lyase
AF_1450	PF04055	Radical SAM superfamily
AF_1450	PF13353	4Fe-4S single cluster domain
AF_1451	PF00118	TCP-1/cpn60 chaperonin family
AF_1452	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_1452	PF08447	PAS fold
AF_1453	PF01588	Putative tRNA binding domain
AF_1453	PF08264	Anticodon-binding domain of tRNA
AF_1453	PF09334	tRNA synthetases class I (M)
AF_1454	PF01428	AN1-like Zinc finger
AF_1458	PF00270	DEAD/DEAH box helicase
AF_1458	PF00271	Helicase conserved C-terminal domain
AF_1458	PF02732	ERCC4 domain
AF_1458	PF12826	Helix-hairpin-helix motif
AF_1459	PF14947	Winged helix-turn-helix
AF_1461	PF13187	4Fe-4S dicluster domain
AF_1462	PF01794	AF_1462
AF_1463	PF00890	FAD binding domain
AF_1463	PF02910	Fumarate reductase flavoprotein C-term
AF_1467	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_1468	PF08626	AF_1468
AF_1469	PF00005	ABC transporter
AF_1470	PF02687	AF_1470
AF_1470	PF12704	MacB-like periplasmic core domain
AF_1471	PF01554	MatE
AF_1472	PF00072	Response regulator receiver domain
AF_1472	PF00989	PAS fold
AF_1472	PF13185	GAF domain
AF_1473	PF00072	Response regulator receiver domain
AF_1475	PF03073	TspO/MBR family
AF_1476	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AF_1477	PF13840	ACT domain
AF_1478	PF02697	AF_1478
AF_1479	PF01850	PIN domain
AF_1481	PF02697	AF_1481
AF_1483	PF00512	His Kinase A (phospho-acceptor) domain
AF_1483	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_1483	PF08447	PAS fold
AF_1483	PF13185	GAF domain
AF_1483	PF13426	PAS domain
AF_1484	PF06745	KaiC
AF_1485	PF01702	Queuine tRNA-ribosyltransferase
AF_1486	PF14010	Phosphoenolpyruvate carboxylase
AF_1488	PF01467	Cytidylyltransferase
AF_1489	PF00037	4Fe-4S binding domain
AF_1489	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
AF_1489	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AF_1490	PF00687	Ribosomal protein L1p/L10e family
AF_1491	PF00466	Ribosomal protein L10
AF_1492	PF00428	60s Acidic ribosomal protein
AF_1493	PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
AF_1494	PF06560	Glucose-6-phosphate isomerase (GPI)
AF_1495	PF01951	Archease protein family (MTH1598/TM1083)
AF_1496	PF05559	AF_1496
AF_1497	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AF_1500	PF03259	Roadblock/LC7 domain
AF_1501	PF09987	AF_1501
AF_1503	PF00672	HAMP domain
AF_1504	PF02359	Cell division protein 48 (CDC48), N-terminal domain
AF_1505	PF01769	Divalent cation transporter
AF_1506	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AF_1506	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AF_1508	PF01925	AF_1508
AF_1509	PF00753	Metallo-beta-lactamase superfamily
AF_1510	PF00501	AMP-binding enzyme
AF_1510	PF13193	AMP-binding enzyme C-terminal domain
AF_1511	PF00583	Acetyltransferase (GNAT) family
AF_1511	PF13380	CoA binding domain
AF_1511	PF13549	ATP-grasp domain
AF_1511	PF13607	Succinyl-CoA ligase like flavodoxin domain
AF_1512	PF00902	Sec-independent protein translocase protein (TatC)
AF_1513	PF05708	Orthopoxvirus protein of unknown function (DUF830)
AF_1515	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_1516	PF03749	Sugar fermentation stimulation protein
AF_1517	PF00583	Acetyltransferase (GNAT) family
AF_1518	PF02441	Flavoprotein
AF_1519	PF03358	NADPH-dependent FMN reductase
AF_1520	PF00258	Flavodoxin
AF_1520	PF00753	Metallo-beta-lactamase superfamily
AF_1521	PF01661	Macro domain
AF_1522	PF05127	Helicase
AF_1522	PF08351	Domain of unknown function (DUF1726)
AF_1522	PF13718	GNAT acetyltransferase 2
AF_1523	PF04266	ASCH domain
AF_1525	PF01925	AF_1525
AF_1526	PF00582	Universal stress protein family
AF_1527	PF01629	AF_1527
AF_1529	PF01157	Ribosomal protein L21e
AF_1530	PF03874	RNA polymerase Rpb4
AF_1531	PF04919	Protein of unknown function (DUF655)
AF_1532	PF05239	PRC-barrel domain
AF_1533	PF00892	EamA-like transporter family
AF_1534	PF02036	SCP-2 sterol transfer family
AF_1535	PF02943	Ferredoxin thioredoxin reductase catalytic beta chain
AF_1536	PF00462	Glutaredoxin
AF_1537	PF12697	Alpha/beta hydrolase family
AF_1538	PF02667	AF_1538
AF_1539	PF00549	CoA-ligase
AF_1539	PF02629	CoA binding domain
AF_1540	PF00549	CoA-ligase
AF_1540	PF08442	ATP-grasp domain
AF_1541	PF07690	Major Facilitator Superfamily
AF_1542	PF03551	Transcriptional regulator PadR-like family
AF_1543	PF00432	Prenyltransferase and squalene oxidase repeat
AF_1544	PF12840	Helix-turn-helix domain
AF_1545	PF04254	AF_1545
AF_1546	PF00924	Mechanosensitive ion channel
AF_1547	PF03477	ATP cone domain
AF_1548	PF04471	Restriction endonuclease
AF_1549	PF02680	Uncharacterized ArCR, COG1888
AF_1550	PF02811	PHP domain
AF_1551	PF00348	Polyprenyl synthetase
AF_1552	PF00892	EamA-like transporter family
AF_1553	PF01885	RNA 2'-phosphotransferase, Tpt1 / KptA family
AF_1554	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_1556	PF06508	Queuosine biosynthesis protein QueC
AF_1558	PF02463	RecF/RecN/SMC N terminal domain
AF_1558	PF06470	SMC proteins Flexible Hinge Domain
AF_1559	PF02616	ScpA/B protein
AF_1561	PF01925	AF_1561
AF_1563	PF12697	Alpha/beta hydrolase family
AF_1564	PF01022	Bacterial regulatory protein, arsR family
AF_1564	PF13412	Winged helix-turn-helix DNA-binding
AF_1571	PF00882	Zinc dependent phospholipase C
AF_1580	PF04079	Putative transcriptional regulators (Ypuh-like)
AF_1583	PF04055	Radical SAM superfamily
AF_1585	PF05168	HEPN domain
AF_1586	PF01909	Nucleotidyltransferase domain
AF_1587	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain
AF_1587	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain
AF_1588	PF03435	Saccharopine dehydrogenase
AF_1588	PF16653	AF_1588
AF_1589	PF04055	Radical SAM superfamily
AF_1590	PF04894	AF_1590
AF_1590	PF04895	AF_1590
AF_1591	PF01402	Ribbon-helix-helix protein, copG family
AF_1592	PF13241	Putative NAD(P)-binding
AF_1595	PF01171	PP-loop family
AF_1596	PF13601	Winged helix DNA-binding domain
AF_1598	PF14018	AF_1598
AF_1599	PF00290	Tryptophan synthase alpha chain
AF_1600	PF00291	Pyridoxal-phosphate dependent enzyme
AF_1601	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
AF_1602	PF00117	Glutamine amidotransferase class-I
AF_1603	PF00425	chorismate binding enzyme
AF_1603	PF04715	Anthranilate synthase component I, N terminal region
AF_1604	PF00218	Indole-3-glycerol phosphate synthase
AF_1604	PF00591	Glycosyl transferase family, a/b domain
AF_1606	PF00528	Binding-protein-dependent transport system inner membrane component
AF_1607	PF00528	Binding-protein-dependent transport system inner membrane component
AF_1608	PF00005	ABC transporter
AF_1608	PF08402	TOBE domain
AF_1609	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AF_1609	PF03129	Anticodon binding domain
AF_1610	PF02675	S-adenosylmethionine decarboxylase
AF_1611	PF01861	Protein of unknown function DUF43
AF_1612	PF00582	Universal stress protein family
AF_1612	PF13520	Amino acid permease
AF_1613	PF01909	Nucleotidyltransferase domain
AF_1614	PF05168	HEPN domain
AF_1615	PF04055	Radical SAM superfamily
AF_1616	PF17373	AF_1616
AF_1619	PF03601	AF_1619
AF_1620	PF00672	HAMP domain
AF_1620	PF00989	PAS fold
AF_1620	PF05763	AF_1620
AF_1620	PF13426	PAS domain
AF_1621	PF03601	AF_1621
AF_1622	PF01037	AsnC family
AF_1622	PF13412	Winged helix-turn-helix DNA-binding
AF_1623	PF00155	Aminotransferase class I and II
AF_1624	PF02597	ThiS family
AF_1626	PF09946	AF_1626
AF_1627	PF01381	Helix-turn-helix
AF_1628	PF01609	Transposase DDE domain
AF_1630	PF01862	Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)
AF_1632	PF01925	AF_1632
AF_1635	PF04055	Radical SAM superfamily
AF_1638	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain
AF_1638	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain
AF_1639	PF00989	PAS fold
AF_1639	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_1640	PF02915	Rubrerythrin
AF_1641	PF00378	Enoyl-CoA hydratase/isomerase family
AF_1642	PF03129	Anticodon binding domain
AF_1642	PF13393	Histidyl-tRNA synthetase
AF_1643	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
AF_1644	PF00037	4Fe-4S binding domain
AF_1644	PF12838	4Fe-4S dicluster domain
AF_1644	PF13237	4Fe-4S dicluster domain
AF_1645	PF02441	Flavoprotein
AF_1645	PF04127	DNA / pantothenate metabolism flavoprotein
AF_1646	PF00288	GHMP kinases N terminal domain
AF_1647	PF00795	Carbon-nitrogen hydrolase
AF_1648	PF01040	UbiA prenyltransferase family
AF_1649	PF00037	4Fe-4S binding domain
AF_1649	PF04060	Putative Fe-S cluster
AF_1651	PF01568	Molydopterin dinucleotide binding domain
AF_1652	PF00082	Subtilase family
AF_1652	PF00801	PKD domain
AF_1653	PF00082	Subtilase family
AF_1654	PF17231	AF_1654
AF_1655	PF00717	Peptidase S24-like
AF_1657	PF00717	Peptidase S24-like
AF_1658	PF12389	AF_1658
AF_1659	PF12389	AF_1659
AF_1660	PF12389	AF_1660
AF_1661	PF12389	AF_1661
AF_1662	PF01978	Sugar-specific transcriptional regulator TrmB
AF_1663	PF14947	Winged helix-turn-helix
AF_1664	PF00317	Ribonucleotide reductase, all-alpha domain
AF_1664	PF02867	Ribonucleotide reductase, barrel domain
AF_1664	PF12637	AF_1664
AF_1665	PF02423	Ornithine cyclodeaminase/mu-crystallin family
AF_1666	PF01902	ATP-binding region
AF_1667	PF01747	ATP-sulfurylase
AF_1667	PF14306	PUA-like domain
AF_1669	PF12139	Adenosine-5'-phosphosulfate reductase beta subunit
AF_1669	PF13187	4Fe-4S dicluster domain
AF_1670	PF00890	FAD binding domain
AF_1670	PF02910	Fumarate reductase flavoprotein C-term
AF_1671	PF00501	AMP-binding enzyme
AF_1671	PF14535	AMP-binding enzyme C-terminal domain
AF_1672	PF01842	ACT domain
AF_1673	PF02080	TrkA-C domain
AF_1673	PF02254	TrkA-N domain
AF_1673	PF07885	Ion channel
AF_1674	PF13685	Iron-containing alcohol dehydrogenase
AF_1675	PF13899	Thioredoxin-like
AF_1676	PF02146	Sir2 family
AF_1677	PF01142	tRNA pseudouridine synthase D (TruD)
AF_1678	PF02036	SCP-2 sterol transfer family
AF_1679	PF03283	AF_1679
AF_1681	PF17278	AF_1681
AF_1683	PF01850	PIN domain
AF_1684	PF04055	Radical SAM superfamily
AF_1685	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AF_1686	PF01909	Nucleotidyltransferase domain
AF_1687	PF02593	AF_1687
AF_1688	PF01925	AF_1688
AF_1689	PF02697	AF_1689
AF_1690	PF01850	PIN domain
AF_1691	PF00892	EamA-like transporter family
AF_1692	PF00633	Helix-hairpin-helix motif
AF_1692	PF00730	HhH-GPD superfamily base excision DNA repair protein
AF_1693	PF00586	AIR synthase related protein, N-terminal domain
AF_1693	PF02769	AIR synthase related protein, C-terminal domain
AF_1694	PF00579	tRNA synthetases class I (W and Y)
AF_1695	PF02558	Ketopantoate reductase PanE/ApbA
AF_1695	PF08546	Ketopantoate reductase PanE/ApbA C terminal
AF_1696	PF06695	AF_1696
AF_1697	PF01022	Bacterial regulatory protein, arsR family
AF_1698	PF01161	Phosphatidylethanolamine-binding protein
AF_1699	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
AF_1700	PF14697	4Fe-4S dicluster domain
AF_1701	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
AF_1701	PF17147	AF_1701
AF_1702	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AF_1703	PF01810	AF_1703
AF_1704	PF02621	Menaquinone biosynthesis
AF_1705	PF00665	Integrase core domain
AF_1705	PF13518	Helix-turn-helix domain
AF_1706	PF00561	alpha/beta hydrolase fold
AF_1707	PF01863	Protein of unknown function DUF45
AF_1708	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AF_1708	PF04851	Type III restriction enzyme, res subunit
AF_1709	PF05168	HEPN domain
AF_1710	PF01420	Type I restriction modification DNA specificity domain
AF_1711	PF01850	PIN domain
AF_1712	PF01954	Protein of unknown function DUF104
AF_1716	PF07859	alpha/beta hydrolase fold
AF_1717	PF07849	AF_1717
AF_1718	PF17341	AF_1718
AF_1719	PF10369	Small subunit of acetolactate synthase
AF_1719	PF13710	ACT domain
AF_1720	PF00205	Thiamine pyrophosphate enzyme, central domain
AF_1720	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AF_1720	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AF_1721	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_1721	PF05228	AF_1721
AF_1722	PF03833	DNA polymerase II large subunit DP2
AF_1723	PF01037	AsnC family
AF_1723	PF13404	AsnC-type helix-turn-helix domain
AF_1724	PF03747	ADP-ribosylglycohydrolase
AF_1725	PF01068	ATP dependent DNA ligase domain
AF_1725	PF04679	ATP dependent DNA ligase C terminal region
AF_1726	PF02735	Ku70/Ku80 beta-barrel domain
AF_1727	PF00390	Malic enzyme, N-terminal domain
AF_1727	PF03949	Malic enzyme, NAD binding domain
AF_1728	PF00534	Glycosyl transferases group 1
AF_1728	PF13439	Glycosyltransferase Family 4
AF_1730	PF01416	tRNA pseudouridine synthase
AF_1732	PF01113	Dihydrodipicolinate reductase, N-terminus
AF_1732	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AF_1733	PF10133	AF_1733
AF_1735	PF12698	ABC-2 family transporter protein
AF_1736	PF00368	Hydroxymethylglutaryl-coenzyme A reductase
AF_1737	PF03190	Protein of unknown function, DUF255
AF_1737	PF07221	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
AF_1738	PF01593	Flavin containing amine oxidoreductase
AF_1740	PF01864	AF_1740
AF_1741	PF00156	Phosphoribosyl transferase domain
AF_1743	PF13412	Winged helix-turn-helix DNA-binding
AF_1744	PF01066	CDP-alcohol phosphatidyltransferase
AF_1745	PF01402	Ribbon-helix-helix protein, copG family
AF_1746	PF00909	Ammonium Transporter Family
AF_1747	PF00543	Nitrogen regulatory protein P-II
AF_1748	PF00753	Metallo-beta-lactamase superfamily
AF_1749	PF00909	Ammonium Transporter Family
AF_1750	PF00543	Nitrogen regulatory protein P-II
AF_1751	PF01676	Metalloenzyme superfamily
AF_1751	PF10143	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
AF_1752	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AF_1752	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AF_1753	PF12146	Putative lysophospholipase
AF_1754	PF05437	AF_1754
AF_1755	PF03591	AF_1755
AF_1756	PF08821	AF_1756
AF_1758	PF01364	Peptidase family C25
AF_1759	PF02457	DisA bacterial checkpoint controller nucleotide-binding
AF_1760	PF00582	Universal stress protein family
AF_1761	PF00694	Aconitase C-terminal domain
AF_1763	PF00561	alpha/beta hydrolase fold
AF_1764	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AF_1765	PF01026	TatD related DNase
AF_1766	PF00497	Bacterial extracellular solute-binding proteins, family 3
AF_1766	PF08448	PAS fold
AF_1767	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AF_1768	PF00528	Binding-protein-dependent transport system inner membrane component
AF_1769	PF00528	Binding-protein-dependent transport system inner membrane component
AF_1769	PF12911	AF_1769
AF_1770	PF00005	ABC transporter
AF_1770	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AF_1771	PF00005	ABC transporter
AF_1771	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AF_1772	PF00501	AMP-binding enzyme
AF_1772	PF13193	AMP-binding enzyme C-terminal domain
AF_1773	PF02754	AF_1773
AF_1773	PF13534	4Fe-4S dicluster domain
AF_1774	PF01909	Nucleotidyltransferase domain
AF_1774	PF13520	Amino acid permease
AF_1775	PF01979	Amidohydrolase family
AF_1776	PF03911	Sec61beta family
AF_1777	PF01784	NIF3 (NGG1p interacting factor 3)
AF_1778	PF04026	SpoVG
AF_1779	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AF_1779	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AF_1780	PF00205	Thiamine pyrophosphate enzyme, central domain
AF_1780	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AF_1780	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AF_1781	PF00574	Clp protease
AF_1781	PF01957	NfeD-like C-terminal, partner-binding
AF_1782	PF04010	Protein of unknown function (DUF357)
AF_1783	PF00398	Ribosomal RNA adenine dimethylase
AF_1785	PF01325	Iron dependent repressor, N-terminal DNA binding domain
AF_1785	PF02742	Iron dependent repressor, metal binding and dimerisation domain
AF_1786	PF01613	Flavin reductase like domain
AF_1787	PF01381	Helix-turn-helix
AF_1788	PF01048	Phosphorylase superfamily
AF_1790	PF00149	Calcineurin-like phosphoesterase
AF_1791	PF00717	Peptidase S24-like
AF_1792	PF09946	AF_1792
AF_1793	PF01381	Helix-turn-helix
AF_1794	PF01658	Myo-inositol-1-phosphate synthase
AF_1794	PF07994	Myo-inositol-1-phosphate synthase
AF_1795	PF05343	M42 glutamyl aminopeptidase
AF_1796	PF01380	SIS domain
AF_1797	PF01895	PhoU domain
AF_1797	PF04014	Antidote-toxin recognition MazE
AF_1798	PF01384	AF_1798
AF_1799	PF01865	Protein of unknown function DUF47
AF_1800	PF01594	AF_1800
AF_1801	PF00588	SpoU rRNA Methylase family
AF_1803	PF01866	Putative diphthamide synthesis protein
AF_1804	PF01163	RIO1 family
AF_1805	PF00013	KH domain
AF_1806	PF01131	DNA topoisomerase
AF_1806	PF01396	AF_1806
AF_1806	PF01751	Toprim domain
AF_1807	PF01022	Bacterial regulatory protein, arsR family
AF_1808	PF14947	Winged helix-turn-helix
AF_1810	PF04055	Radical SAM superfamily
AF_1811	PF02142	MGS-like domain
AF_1812	PF04266	ASCH domain
AF_1813	PF06068	TIP49 C-terminus
AF_1814	PF06935	AF_1814
AF_1815	PF00202	Aminotransferase class-III
AF_1817	PF00440	Bacterial regulatory proteins, tetR family
AF_1818	PF07705	CARDB
AF_1819	PF00005	ABC transporter
AF_1820	PF02687	AF_1820
AF_1822	PF00149	Calcineurin-like phosphoesterase
AF_1825	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AF_1826	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AF_1826	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
AF_1827	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AF_1828	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
AF_1829	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
AF_1829	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
AF_1830	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
AF_1831	PF00146	NADH dehydrogenase
AF_1833	PF04422	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
AF_1833	PF04432	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
AF_1833	PF13237	4Fe-4S dicluster domain
AF_1834	PF04289	Protein of unknown function (DUF447)
AF_1835	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
AF_1838	PF01958	Domain of unknown function DUF108
AF_1838	PF03447	Homoserine dehydrogenase, NAD binding domain
AF_1839	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
AF_1839	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
AF_1840	PF00557	Metallopeptidase family M24
AF_1841	PF00005	ABC transporter
AF_1842	PF02361	Cobalt transport protein
AF_1843	PF01891	Cobalt uptake substrate-specific transmembrane region
AF_1843	PF13190	AF_1843
AF_1846	PF01978	Sugar-specific transcriptional regulator TrmB
AF_1849	PF03063	Prismane/CO dehydrogenase family
AF_1850	PF00753	Metallo-beta-lactamase superfamily
AF_1851	PF02754	AF_1851
AF_1853	PF01022	Bacterial regulatory protein, arsR family
AF_1854	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
AF_1854	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
AF_1855	PF00501	AMP-binding enzyme
AF_1855	PF13193	AMP-binding enzyme C-terminal domain
AF_1858	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AF_1858	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_1861	PF03787	RAMP superfamily
AF_1862	PF09701	CRISPR-associated protein (Cas_Cmr5)
AF_1863	PF03787	RAMP superfamily
AF_1864	PF09620	AF_1864
AF_1866	PF09700	CRISPR-associated protein (Cas_Cmr3)
AF_1867	PF12469	CRISPR-associated protein
AF_1868	PF03787	RAMP superfamily
AF_1869	PF01022	Bacterial regulatory protein, arsR family
AF_1871	PF01905	CRISPR-associated negative auto-regulator DevR/Csa2
AF_1872	PF09704	CRISPR-associated protein (Cas_Cas5)
AF_1874	PF00270	DEAD/DEAH box helicase
AF_1874	PF00271	Helicase conserved C-terminal domain
AF_1876	PF09827	CRISPR associated protein Cas2
AF_1877	PF01930	Domain of unknown function DUF83
AF_1878	PF01867	CRISPR associated protein Cas1
AF_1879	PF06023	AF_1879
AF_1883	PF01061	AF_1883
AF_1884	PF00005	ABC transporter
AF_1884	PF13732	AF_1884
AF_1885	PF01191	RNA polymerase Rpb5, C-terminal domain
AF_1886	PF04561	RNA polymerase Rpb2, domain 2
AF_1886	PF04563	RNA polymerase beta subunit
AF_1886	PF04565	RNA polymerase Rpb2, domain 3
AF_1887	PF00562	RNA polymerase Rpb2, domain 6
AF_1887	PF04560	RNA polymerase Rpb2, domain 7
AF_1887	PF04566	RNA polymerase Rpb2, domain 4
AF_1887	PF04567	RNA polymerase Rpb2, domain 5
AF_1888	PF00623	RNA polymerase Rpb1, domain 2
AF_1888	PF04983	RNA polymerase Rpb1, domain 3
AF_1888	PF04997	RNA polymerase Rpb1, domain 1
AF_1888	PF04998	RNA polymerase Rpb1, domain 5
AF_1888	PF05000	RNA polymerase Rpb1, domain 4
AF_1889	PF04998	RNA polymerase Rpb1, domain 5
AF_1890	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
AF_1891	PF07650	KH domain
AF_1892	PF00164	Ribosomal protein S12/S23
AF_1893	PF00177	Ribosomal protein S7p/S5e
AF_1894	PF00009	Elongation factor Tu GTP binding domain
AF_1894	PF00679	Elongation factor G C-terminus
AF_1894	PF03144	Elongation factor Tu domain 2
AF_1894	PF03764	Elongation factor G, domain IV
AF_1894	PF14492	Elongation Factor G, domain II
AF_1895	PF03692	AF_1895
AF_1896	PF03358	NADPH-dependent FMN reductase
AF_1897	PF00535	Glycosyl transferase family 2
AF_1897	PF13632	Glycosyl transferase family group 2
AF_1898	PF00072	Response regulator receiver domain
AF_1899	PF13662	Toprim domain
AF_1900	PF13238	AAA domain
AF_1901	PF01956	AF_1901
AF_1902	PF00344	SecY translocase
AF_1902	PF10559	Plug domain of Sec61p
AF_1903	PF00828	Ribosomal protein L18e/L15
AF_1904	PF00327	Ribosomal protein L30p/L7e
AF_1905	PF00333	Ribosomal protein S5, N-terminal domain
AF_1905	PF03719	Ribosomal protein S5, C-terminal domain
AF_1906	PF17144	AF_1906
AF_1907	PF01280	Ribosomal protein L19e
AF_1908	PF01655	Ribosomal protein L32
AF_1909	PF00347	Ribosomal protein L6
AF_1910	PF00410	Ribosomal protein S8
AF_1911	PF00253	Ribosomal protein S14p/S29e
AF_1912	PF00281	Ribosomal protein L5
AF_1912	PF00673	ribosomal L5P family C-terminus
AF_1913	PF00900	Ribosomal family S4e
AF_1913	PF01479	S4 domain
AF_1913	PF08071	RS4NT (NUC023) domain
AF_1914	PF00467	KOW motif
AF_1914	PF16906	AF_1914
AF_1915	PF00238	Ribosomal protein L14p/L23e
AF_1916	PF00366	Ribosomal protein S17
AF_1917	PF01868	Domain of unknown function UPF0086
AF_1918	PF00831	Ribosomal L29 protein
AF_1919	PF00189	Ribosomal protein S3, C-terminal domain
AF_1919	PF07650	KH domain
AF_1920	PF00237	Ribosomal protein L22p/L17e
AF_1921	PF00203	Ribosomal protein S19
AF_1922	PF00181	Ribosomal Proteins L2, RNA binding domain
AF_1922	PF03947	Ribosomal Proteins L2, C-terminal domain
AF_1923	PF00276	Ribosomal protein L23
AF_1924	PF00573	Ribosomal protein L4/L1 family
AF_1925	PF00297	Ribosomal protein L3
AF_1926	PF02598	Putative RNA methyltransferase
AF_1928	PF01568	Molydopterin dinucleotide binding domain
AF_1929	PF00384	Molybdopterin oxidoreductase
AF_1930	PF07969	Amidohydrolase family
AF_1931	PF01493	GXGXG motif
AF_1932	PF00501	AMP-binding enzyme
AF_1932	PF13193	AMP-binding enzyme C-terminal domain
AF_1933	PF01575	MaoC like domain
AF_1934	PF00582	Universal stress protein family
AF_1935	PF02289	Cyclohydrolase (MCH)
AF_1936	PF08745	UPF0278 family
AF_1937	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AF_1938	PF13380	CoA binding domain
AF_1938	PF13549	ATP-grasp domain
AF_1938	PF13607	Succinyl-CoA ligase like flavodoxin domain
AF_1940	PF00586	AIR synthase related protein, N-terminal domain
AF_1940	PF02769	AIR synthase related protein, C-terminal domain
AF_1941	PF02700	Phosphoribosylformylglycinamidine (FGAM) synthase
AF_1943	PF07705	CARDB
AF_1946	PF00112	Papain family cysteine protease
AF_1946	PF07705	CARDB
AF_1947	PF03891	AF_1947
AF_1950	PF01502	Phosphoribosyl-AMP cyclohydrolase
AF_1951	PF00013	KH domain
AF_1951	PF00437	Type II/IV secretion system protein
AF_1951	PF13638	PIN domain
AF_1952	PF06550	Protein of unknown function (DUF1119)
AF_1954	PF01425	Amidase
AF_1955	PF01409	tRNA synthetases class II core domain (F)
AF_1956	PF01918	Alba
AF_1957	PF06050	2-hydroxyglutaryl-CoA dehydratase, D-component
AF_1958	PF06050	2-hydroxyglutaryl-CoA dehydratase, D-component
AF_1959	PF01869	BadF/BadG/BcrA/BcrD ATPase family
AF_1960	PF13086	AAA domain
AF_1960	PF13087	AAA domain
AF_1961	PF04055	Radical SAM superfamily
AF_1961	PF13353	4Fe-4S single cluster domain
AF_1963	PF00330	Aconitase family (aconitate hydratase)
AF_1965	PF01870	Archaeal holliday junction resolvase (hjc)
AF_1967	PF01909	Nucleotidyltransferase domain
AF_1968	PF00480	ROK family
AF_1969	PF01871	AMMECR1
AF_1970	PF13424	Tetratricopeptide repeat
AF_1971	PF00011	Hsp20/alpha crystallin family
AF_1972	PF04981	AF_1972
AF_1973	PF02475	Met-10+ like-protein
AF_1974	PF00490	Delta-aminolevulinic acid dehydratase
AF_1975	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
AF_1975	PF01488	Shikimate / quinate 5-dehydrogenase
AF_1975	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
AF_1976	PF00004	ATPase family associated with various cellular activities (AAA)
AF_1977	PF01381	Helix-turn-helix
AF_1978	PF03091	CutA1 divalent ion tolerance protein
AF_1979	PF01909	Nucleotidyltransferase domain
AF_1980	PF01578	AF_1980
AF_1981	PF00950	AF_1981
AF_1982	PF00005	ABC transporter
AF_1983	PF01297	Periplasmic solute binding protein family
AF_1984	PF01325	Iron dependent repressor, N-terminal DNA binding domain
AF_1984	PF02742	Iron dependent repressor, metal binding and dimerisation domain
AF_1985	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
AF_1985	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
AF_1988	PF01928	CYTH domain
AF_1989	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AF_1995	PF00209	Sodium:neurotransmitter symporter family
AF_1997	PF02697	AF_1997
AF_1998	PF02754	AF_1998
AF_1998	PF13183	4Fe-4S dicluster domain
AF_2000	PF00670	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
AF_2000	PF05221	S-adenosyl-L-homocysteine hydrolase
AF_2001	PF13238	AAA domain
AF_2002	PF00155	Aminotransferase class I and II
AF_2004	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AF_2005	PF12804	MobA-like NTP transferase domain
AF_2006	PF04055	Radical SAM superfamily
AF_2006	PF06463	Molybdenum Cofactor Synthesis C
AF_2006	PF13353	4Fe-4S single cluster domain
AF_2007	PF01872	RibD C-terminal domain
AF_2008	PF01978	Sugar-specific transcriptional regulator TrmB
AF_2009	PF04055	Radical SAM superfamily
AF_2009	PF13186	Iron-sulfur cluster-binding domain
AF_2009	PF13353	4Fe-4S single cluster domain
AF_2011	PF04014	Antidote-toxin recognition MazE
AF_2012	PF01850	PIN domain
AF_2013	PF00501	AMP-binding enzyme
AF_2013	PF14535	AMP-binding enzyme C-terminal domain
AF_2014	PF07690	Major Facilitator Superfamily
AF_2015	PF00205	Thiamine pyrophosphate enzyme, central domain
AF_2015	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AF_2015	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AF_2016	PF01370	NAD dependent epimerase/dehydratase family
AF_2017	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AF_2017	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AF_2018	PF01925	AF_2018
AF_2019	PF00465	Iron-containing alcohol dehydrogenase
AF_2021	PF06723	MreB/Mbl protein
AF_2024	PF00155	Aminotransferase class I and II
AF_2029	PF01368	DHH family
AF_2029	PF02254	TrkA-N domain
AF_2029	PF02272	DHHA1 domain
AF_2030	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
AF_2032	PF00512	His Kinase A (phospho-acceptor) domain
AF_2032	PF00989	PAS fold
AF_2032	PF08448	PAS fold
AF_2033	PF00501	AMP-binding enzyme
AF_2033	PF13193	AMP-binding enzyme C-terminal domain
AF_2034	PF00557	Metallopeptidase family M24
AF_2034	PF01321	Creatinase/Prolidase N-terminal domain
AF_2035	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AF_2035	PF02403	Seryl-tRNA synthetase N-terminal domain
AF_2036	PF01040	UbiA prenyltransferase family
AF_2037	PF01008	Initiation factor 2 subunit family
AF_2038	PF05670	AF_2038
AF_2038	PF05833	Fibronectin-binding protein A N-terminus (FbpA)
AF_2039	PF01189	NOL1/NOP2/sun family
AF_2039	PF17125	AF_2039
AF_2040	PF01970	AF_2040
AF_2041	PF14329	AF_2041
AF_2042	PF00696	Amino acid kinase family
AF_2043	PF04038	Domain of unknown function (DUF381)
AF_2044	PF01066	CDP-alcohol phosphatidyltransferase
AF_2045	PF02666	AF_2045
AF_2046	PF09721	AF_2046
AF_2047	PF00303	Thymidylate synthase
AF_2049	PF16575	AF_2049
AF_2050	PF01894	Uncharacterised protein family UPF0047
AF_2051	PF01728	FtsJ-like methyltransferase
AF_2052	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AF_2053	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
AF_2053	PF17147	AF_2053
AF_2054	PF13187	4Fe-4S dicluster domain
AF_2055	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
AF_2056	PF02416	mttA/Hcf106 family
AF_2057	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_2057	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_2057	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_2058	PF04123	AF_2058
AF_2059	PF02676	Methyltransferase TYW3
AF_2060	PF00004	ATPase family associated with various cellular activities (AAA)
AF_2060	PF08542	Replication factor C C-terminal domain
AF_2061	PF01983	Guanylyl transferase CofC like
AF_2062	PF00448	SRP54-type protein, GTPase domain
AF_2062	PF02881	SRP54-type protein, helical bundle domain
AF_2063	PF02996	Prefoldin subunit
AF_2064	PF01775	Ribosomal L18ae/LX protein domain
AF_2065	PF01912	eIF-6 family
AF_2066	PF01198	Ribosomal protein L31e
AF_2067	PF00832	Ribosomal L39 protein
AF_2068	PF01984	Double-stranded DNA-binding domain
AF_2069	PF01090	Ribosomal protein S19e
AF_2070	PF01985	CRS1 / YhbY (CRM) domain
AF_2071	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AF_2071	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AF_2072	PF02594	Uncharacterised ACR, YggU family COG1872
AF_2073	PF01913	Formylmethanofuran-tetrahydromethanopterin formyltransferase
AF_2073	PF02741	FTR, proximal lobe
AF_2074	PF02581	Thiamine monophosphate synthase/TENI
AF_2075	PF02110	Hydroxyethylthiazole kinase family
AF_2078	PF00717	Peptidase S24-like
AF_2079	PF06510	AF_2079
AF_2080	PF06510	AF_2080
AF_2081	PF06510	AF_2081
AF_2083	PF14947	Winged helix-turn-helix
AF_2084	PF03977	AF_2084
AF_2085	PF00364	Biotin-requiring enzyme
AF_2086	PF04277	AF_2086
AF_2087	PF01269	Fibrillarin
AF_2088	PF01798	Putative snoRNA binding domain
AF_2089	PF00288	GHMP kinases N terminal domain
AF_2090-C	PF13229	Right handed beta helix region
AF_2091	PF09853	AF_2091
AF_2095	PF01981	Peptidyl-tRNA hydrolase PTH2
AF_2096	PF08423	Rad51
AF_2097	PF01969	Protein of unknown function DUF111
AF_2098	PF00004	ATPase family associated with various cellular activities (AAA)
AF_2098	PF02359	Cell division protein 48 (CDC48), N-terminal domain
AF_2098	PF02933	Cell division protein 48 (CDC48), domain 2
AF_2098	PF09336	Vps4 C terminal oligomerisation domain
AF_2099	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AF_2099	PF13378	Enolase C-terminal domain-like
AF_2100	PF00205	Thiamine pyrophosphate enzyme, central domain
AF_2100	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AF_2100	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AF_2101	PF00107	Zinc-binding dehydrogenase
AF_2101	PF08240	Alcohol dehydrogenase GroES-like domain
AF_2102	PF07690	Major Facilitator Superfamily
AF_2103	PF07690	Major Facilitator Superfamily
AF_2104	PF04055	Radical SAM superfamily
AF_2105	PF02597	ThiS family
AF_2106	PF01982	Domain of unknown function DUF120
AF_2106	PF13412	Winged helix-turn-helix DNA-binding
AF_2107	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AF_2108	PF02593	AF_2108
AF_2109	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AF_2109	PF08447	PAS fold
AF_2109	PF13426	PAS domain
AF_2110	PF02592	AF_2110
AF_2111	PF01914	AF_2111
AF_2115	PF13641	Glycosyltransferase like family 2
AF_2116	PF02637	GatB domain
AF_2116	PF02934	GatB/GatE catalytic domain
AF_2117	PF00730	HhH-GPD superfamily base excision DNA repair protein
AF_2118	PF00571	CBS domain
AF_2118	PF01381	Helix-turn-helix
AF_2125	PF01925	AF_2125
AF_2126	PF02596	AF_2126
AF_2127	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AF_2127	PF03466	LysR substrate binding domain
AF_2128	PF00885	6,7-dimethyl-8-ribityllumazine synthase
AF_2129	PF00155	Aminotransferase class I and II
AF_2136	PF01022	Bacterial regulatory protein, arsR family
AF_2137	PF01545	Cation efflux family
AF_2137	PF16916	AF_2137
AF_2138	PF12710	haloacid dehalogenase-like hydrolase
AF_2138	PF13740	ACT domain
AF_2139	PF13358	DDE superfamily endonuclease
AF_2140	PF13565	AF_2140
AF_2142	PF13187	4Fe-4S dicluster domain
AF_2143	PF01978	Sugar-specific transcriptional regulator TrmB
AF_2144	PF00085	Thioredoxin
AF_2145	PF13192	Thioredoxin domain
AF_2146	PF01926	50S ribosome-binding GTPase
AF_2146	PF02824	TGS domain
AF_2146	PF16897	AF_2146
AF_2148	PF00753	Metallo-beta-lactamase superfamily
AF_2149	PF01865	Protein of unknown function DUF47
AF_2150	PF01967	MoaC family
AF_2151	PF00857	Isochorismatase family
AF_2152	PF01201	Ribosomal protein S8e
AF_2153	PF13483	Beta-lactamase superfamily domain
AF_2154	PF03684	AF_2154
AF_2155	PF00753	Metallo-beta-lactamase superfamily
AF_2156	PF01909	Nucleotidyltransferase domain
AF_2156	PF09249	tRNA nucleotidyltransferase, second domain
AF_2157	PF02834	LigT like Phosphoesterase
AF_2162	PF06863	Protein of unknown function (DUF1254)
AF_2163	PF06742	Protein of unknown function (DUF1214)
AF_2169	PF01934	Protein of unknown function DUF86
AF_2170	PF13854	Kelch motif
AF_2172	PF00882	Zinc dependent phospholipase C
AF_2173	PF03060	Nitronate monooxygenase
AF_2175	PF09810	AF_2175
AF_2176	PF01040	UbiA prenyltransferase family
AF_2178	PF01170	Putative RNA methylase family UPF0020
AF_2178	PF02926	THUMP domain
AF_2179	PF02391	MoaE protein
AF_2180	PF12850	Calcineurin-like phosphoesterase superfamily domain
AF_2181	PF01930	Domain of unknown function DUF83
AF_2184	PF01479	S4 domain
AF_2184	PF01728	FtsJ-like methyltransferase
AF_2185	PF00549	CoA-ligase
AF_2185	PF02629	CoA binding domain
AF_2186	PF00549	CoA-ligase
AF_2186	PF08442	ATP-grasp domain
AF_2189	PF02381	MraZ protein
AF_2190	PF01850	PIN domain
AF_2191	PF03100	CcmE
AF_2192	PF01578	AF_2192
AF_2193	PF17299	AF_2193
AF_2194	PF08241	Methyltransferase domain
AF_2195	PF01916	Deoxyhypusine synthase
AF_2196	PF04476	AF_2196
AF_2197	PF01895	PhoU domain
AF_2197	PF02080	TrkA-C domain
AF_2198	PF14464	Prokaryotic homologs of the JAB domain
AF_2199	PF00330	Aconitase family (aconitate hydratase)
AF_2200	PF00293	NUDIX domain
AF_2201	PF09918	AF_2201
AF_2202	PF07853	AF_2202
AF_2202	PF13630	AF_2202
AF_2203	PF03551	Transcriptional regulator PadR-like family
AF_2204	PF04055	Radical SAM superfamily
AF_2204	PF13353	4Fe-4S single cluster domain
AF_2206	PF01467	Cytidylyltransferase
AF_2207	PF01913	Formylmethanofuran-tetrahydromethanopterin formyltransferase
AF_2207	PF02741	FTR, proximal lobe
AF_2208	PF08543	Phosphomethylpyrimidine kinase
AF_2209	PF03029	Conserved hypothetical ATP binding protein
AF_2211	PF01230	HIT domain
AF_2212	PF01954	Protein of unknown function DUF104
AF_2213	PF01850	PIN domain
AF_2215	PF01642	Methylmalonyl-CoA mutase
AF_2216	PF00364	Biotin-requiring enzyme
AF_2217	PF01039	Carboxyl transferase domain
AF_2218	PF13669	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AF_2219	PF02310	B12 binding domain
AF_2223	PF09853	AF_2223
AF_2224	PF00133	tRNA synthetases class I (I, L, M and V)
AF_2224	PF08264	Anticodon-binding domain of tRNA
AF_2225	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AF_2226	PF02926	THUMP domain
AF_2226	PF14419	AF2226-like SPOUT RNA Methylase fused to THUMP
AF_2227	PF01995	Domain of unknown function DUF128
AF_2227	PF08461	Ribonuclease R winged-helix domain
AF_2228	PF04358	DsrC like protein
AF_2229	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AF_2229	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AF_2231	PF03706	AF_2231
AF_2232	PF01475	Ferric uptake regulator family
AF_2233	PF00141	Peroxidase
AF_2234	PF10967	AF_2234
AF_2235	PF04015	AF_2235
AF_2237	PF01725	Ham1 family
AF_2238	PF00118	TCP-1/cpn60 chaperonin family
AF_2240	PF02915	Rubrerythrin
AF_2241	PF04126	Cyclophilin-like
AF_2242	PF00206	Lyase
AF_2242	PF10397	Adenylosuccinate lyase C-terminus
AF_2243	PF00108	Thiolase, N-terminal domain
AF_2243	PF02803	Thiolase, C-terminal domain
AF_2244	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_2244	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_2244	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_2246	PF04060	Putative Fe-S cluster
AF_2247	PF03773	AF_2247
AF_2248	PF13192	Thioredoxin domain
AF_2249	PF00072	Response regulator receiver domain
AF_2250	PF01979	Amidohydrolase family
AF_2251	PF00994	Probable molybdopterin binding domain
AF_2252	PF00764	Arginosuccinate synthase
AF_2253	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
AF_2254	PF00270	DEAD/DEAH box helicase
AF_2254	PF00271	Helicase conserved C-terminal domain
AF_2255	PF01411	tRNA synthetases class II (A)
AF_2255	PF02272	DHHA1 domain
AF_2255	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AF_2256	PF01996	F420-0:Gamma-glutamyl ligase
AF_2257	PF02655	ATP-grasp domain
AF_2258	PF07690	Major Facilitator Superfamily
AF_2259	PF01336	OB-fold nucleic acid binding domain
AF_2259	PF08489	Domain of unknown function (DUF1743)
AF_2260	PF01997	Translin family
AF_2261	PF04055	Radical SAM superfamily
AF_2261	PF08608	Wyosine base formation
AF_2264	PF03061	Thioesterase superfamily
AF_2265	PF00117	Glutamine amidotransferase class-I
AF_2266	PF00753	Metallo-beta-lactamase superfamily
AF_2267	PF00881	Nitroreductase family
AF_2268	PF06314	Acetoacetate decarboxylase (ADC)
AF_2269	PF10609	ParA/MinD ATPase like
AF_2271	PF01022	Bacterial regulatory protein, arsR family
AF_2271	PF08350	AF_2271
AF_2272	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AF_2273	PF00378	Enoyl-CoA hydratase/isomerase family
AF_2273	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AF_2273	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AF_2275	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AF_2275	PF02770	Acyl-CoA dehydrogenase, middle domain
AF_2275	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AF_2276	PF07670	Nucleoside recognition
AF_2277	PF03167	Uracil DNA glycosylase superfamily
AF_2278	PF04055	Radical SAM superfamily
AF_2279	PF01998	AF_2279
AF_2280	PF01998	AF_2280
AF_2281	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
AF_2281	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
AF_2282	PF01000	RNA polymerase Rpb3/RpoA insert domain
AF_2282	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
AF_2282	PF13187	4Fe-4S dicluster domain
AF_2283	PF00411	Ribosomal protein S11
AF_2284	PF00163	Ribosomal protein S4/S9 N-terminal domain
AF_2284	PF01479	S4 domain
AF_2285	PF00416	Ribosomal protein S13/S18
AF_2286	PF00348	Polyprenyl synthetase
AF_2287	PF01070	FMN-dependent dehydrogenase
AF_2288	PF00696	Amino acid kinase family
AF_2289	PF00288	GHMP kinases N terminal domain
AF_2289	PF08544	GHMP kinases C terminal
AF_2290	PF00850	Histone deacetylase domain
AF_2294	PF07690	Major Facilitator Superfamily
AF_2295	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AF_2296	PF01654	AF_2296
AF_2297	PF01654	AF_2297
AF_2299	PF01066	CDP-alcohol phosphatidyltransferase
AF_2300	PF01916	Deoxyhypusine synthase
AF_2301	PF01862	Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)
AF_2302	PF14401	AF_2302
AF_2303	PF08443	RimK-like ATP-grasp domain
AF_2304	PF01909	Nucleotidyltransferase domain
AF_2305	PF05168	HEPN domain
AF_2306	PF03692	AF_2306
AF_2307	PF04107	Glutamate-cysteine ligase family 2(GCS2)
AF_2308	PF03600	Citrate transporter
AF_2309	PF07690	Major Facilitator Superfamily
AF_2310	PF01875	Memo-like protein
AF_2311	PF12802	MarR family
AF_2312	PF02915	Rubrerythrin
AF_2313	PF01575	MaoC like domain
AF_2314	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AF_2315	PF01467	Cytidylyltransferase
AF_2316	PF04055	Radical SAM superfamily
AF_2316	PF13394	4Fe-4S single cluster domain
AF_2317	PF01876	RNase P subunit p30
AF_2318	PF01877	RNA binding
AF_2319	PF00827	Ribosomal L15
AF_2320	PF01015	Ribosomal S3Ae family
AF_2321	PF12804	MobA-like NTP transferase domain
AF_2322	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
AF_2323	PF02654	AF_2323
AF_2324	PF01029	NusB family
AF_2324	PF01189	NOL1/NOP2/sun family
AF_2325	PF04242	Protein of unknown function (DUF424)
AF_2326	PF01873	Domain found in IF2B/IF5
AF_2327	PF01488	Shikimate / quinate 5-dehydrogenase
AF_2327	PF08501	Shikimate dehydrogenase substrate binding domain
AF_2328	PF02686	Glu-tRNAGln amidotransferase C subunit
AF_2329	PF01425	Amidase
AF_2331	PF14556	AF2331-like
AF_2333	PF04412	AF_2333
AF_2334	PF01564	Spermine/spermidine synthase
AF_2334	PF17284	AF_2334
AF_2335	PF00857	Isochorismatase family
AF_2336	PF12697	Alpha/beta hydrolase family
AF_2338	PF04465	AF_2338
AF_2342	PF05016	Plasmid stabilisation system protein
AF_2345	PF03602	Conserved hypothetical protein 95
AF_2345	PF06634	AF_2345
AF_2350	PF00271	Helicase conserved C-terminal domain
AF_2350	PF04851	Type III restriction enzyme, res subunit
AF_2350	PF13020	AF_2350
AF_2351	PF04033	Domain of unknown function (DUF365)
AF_2356	PF01878	EVE domain
AF_2357	PF01841	Transglutaminase-like superfamily
AF_2358	PF00589	Phage integrase family
AF_2359	PF04014	Antidote-toxin recognition MazE
AF_2360	PF01850	PIN domain
AF_2361	PF07521	RNA-metabolising metallo-beta-lactamase
AF_2363	PF00586	AIR synthase related protein, N-terminal domain
AF_2363	PF02769	AIR synthase related protein, C-terminal domain
AF_2364	PF00005	ABC transporter
AF_2365	PF01458	Uncharacterized protein family (UPF0051)
AF_2366	PF00155	Aminotransferase class I and II
AF_2367	PF00583	Acetyltransferase (GNAT) family
AF_2368	PF00501	AMP-binding enzyme
AF_2368	PF13193	AMP-binding enzyme C-terminal domain
AF_2370	PF06677	AF_2370
AF_2372	PF00459	Inositol monophosphatase family
AF_2373	PF01513	ATP-NAD kinase
AF_2374	PF00930	Dipeptidyl peptidase IV (DPP IV) N-terminal region
AF_2375	PF00404	Dockerin type I repeat
AF_2375	PF00963	Cohesin domain
AF_2375	PF07676	WD40-like Beta Propeller Repeat
AF_2376	PF00963	Cohesin domain
AF_2377	PF02579	Dinitrogenase iron-molybdenum cofactor
AF_2378	PF02579	Dinitrogenase iron-molybdenum cofactor
AF_2380	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AF_2381	PF00037	4Fe-4S binding domain
AF_2381	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AF_2382	PF10609	ParA/MinD ATPase like
AF_2383	PF00753	Metallo-beta-lactamase superfamily
AF_2384	PF00384	Molybdopterin oxidoreductase
AF_2384	PF01568	Molydopterin dinucleotide binding domain
AF_2384	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AF_2385	PF13247	4Fe-4S dicluster domain
AF_2386	PF03916	AF_2386
AF_2387	PF04140	Isoprenylcysteine carboxyl methyltransferase (ICMT) family
AF_2388	PF01545	Cation efflux family
AF_2388	PF02579	Dinitrogenase iron-molybdenum cofactor
AF_2388	PF16916	AF_2388
AF_2389-C	PF13193	AMP-binding enzyme C-terminal domain
AF_2391	PF17253	AF_2391
AF_2392	PF17253	AF_2392
AF_2394	PF02421	Ferrous iron transport protein B
AF_2394	PF07664	AF_2394
AF_2394	PF07670	Nucleoside recognition
AF_2395	PF01325	Iron dependent repressor, N-terminal DNA binding domain
AF_2395	PF02742	Iron dependent repressor, metal binding and dimerisation domain
AF_2396	PF04023	FeoA domain
AF_2397	PF03063	Prismane/CO dehydrogenase family
AF_2397	PF12838	4Fe-4S dicluster domain
AF_2398	PF02552	CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
AF_2399	PF00588	SpoU rRNA Methylase family
AF_2400	PF01841	Transglutaminase-like superfamily
AF_2402	PF00583	Acetyltransferase (GNAT) family
AF_2402	PF04055	Radical SAM superfamily
AF_2402	PF16199	AF_2402
AF_2404	PF01022	Bacterial regulatory protein, arsR family
AF_2405	PF01893	Uncharacterised protein family UPF0058
AF_2406	PF00270	DEAD/DEAH box helicase
AF_2406	PF00271	Helicase conserved C-terminal domain
AF_2406	PF09369	AF_2406
AF_2407	PF00753	Metallo-beta-lactamase superfamily
AF_2408	PF02627	Carboxymuconolactone decarboxylase family
AF_2409	PF13484	AF_2409
AF_2410	PF10061	Uncharacterized conserved protein (DUF2299)
AF_2411	PF00296	Luciferase-like monooxygenase
AF_2412	PF01964	ThiC family
AF_2413	PF04055	Radical SAM superfamily
AF_2413	PF13186	Iron-sulfur cluster-binding domain
AF_2413	PF13353	4Fe-4S single cluster domain
AF_2414	PF01381	Helix-turn-helix
AF_2415	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AF_2416	PF00108	Thiolase, N-terminal domain
AF_2416	PF02803	Thiolase, C-terminal domain
AF_2417	PF01796	AF_2417
AF_2417	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
AF_2418	PF02732	ERCC4 domain
AF_2418	PF12826	Helix-hairpin-helix motif
AF_2419	PF00072	Response regulator receiver domain
AF_2420	PF00989	PAS fold
AF_2420	PF13185	GAF domain
AF_2421	PF00133	tRNA synthetases class I (I, L, M and V)
AF_2421	PF08264	Anticodon-binding domain of tRNA
AF_2422	PF04008	Adenosine specific kinase
AF_2424	PF01882	AF_2424
AF_2425	PF07726	ATPase family associated with various cellular activities (AAA)
AF_2426	PF01163	RIO1 family
AF_2426	PF09202	Rio2, N-terminal
AF_2427	PF04312	AF_2427
AF_2428	PF01261	Xylose isomerase-like TIM barrel
AF_2429	PF00378	Enoyl-CoA hydratase/isomerase family
AF_2430	PF00149	Calcineurin-like phosphoesterase
AF_2430	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AF_2431	PF01862	Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)
AF_2432	PF01909	Nucleotidyltransferase domain
AF_2433	PF01934	Protein of unknown function DUF86
AF_2434	PF09827	CRISPR associated protein Cas2
AF_2435	PF01867	CRISPR associated protein Cas1
AF_2436	PF01930	Domain of unknown function DUF83