AF_0004 SM00382 ATPases associated with a variety of cellular activities AF_0006 SM01018 B12 binding domain AF_0011 SM01018 B12 binding domain AF_0021 SM00091 PAS domain AF_0021 SM00387 Histidine kinase-like ATPases AF_0023 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain AF_0032 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AF_0041 SM00382 ATPases associated with a variety of cellular activities AF_0056 SM00659 RNA polymerase subunit CX AF_0058 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AF_0062 SM00116 Domain in cystathionine beta-synthase and other proteins. AF_0065 SM00670 Large family of predicted nucleotide-binding domains AF_0071 SM00487 DEAD-like helicases superfamily AF_0071 SM00490 helicase superfamily c-terminal domain AF_0077 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain AF_0078 SM00460 Transglutaminase/protease-like homologues AF_0087 SM00382 ATPases associated with a variety of cellular activities AF_0088 SM00062 Bacterial periplasmic substrate-binding proteins AF_0090 SM00849 Metallo-beta-lactamase superfamily AF_0092 SM00382 ATPases associated with a variety of cellular activities AF_0108 SM01133 AF_0108 AF_0111 SM00116 Domain in cystathionine beta-synthase and other proteins. AF_0159 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AF_0161 SM00852 Probable molybdopterin binding domain AF_0167 SM00849 Metallo-beta-lactamase superfamily AF_0176 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AF_0206 SM00316 Ribosomal protein S1-like RNA-binding domain AF_0208 SM00387 Histidine kinase-like ATPases AF_0211 SM00116 Domain in cystathionine beta-synthase and other proteins. AF_0215 SM01407 AF_0215 AF_0219 SM00917 LeuA allosteric (dimerisation) domain AF_0220 SM00878 Biotin carboxylase C-terminal domain AF_0221 SM00382 ATPases associated with a variety of cellular activities AF_0222 SM00382 ATPases associated with a variety of cellular activities AF_0227 SM00830 Chorismate mutase type II AF_0230 SM01133 AF_0230 AF_0231 SM00062 Bacterial periplasmic substrate-binding proteins AF_0231 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AF_0234 SM00849 Metallo-beta-lactamase superfamily AF_0238 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AF_0238 SM01136 AF_0238 AF_0243 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_0244 SM00382 ATPases associated with a variety of cellular activities AF_0244 SM01074 CDC6, C terminal AF_0245 SM00529 Helix-turn-helix diphteria tox regulatory element AF_0245 SM00899 AF_0245 AF_0264 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AF_0264 SM00475 5'-3' exonuclease AF_0264 SM00484 Xeroderma pigmentosum G I-region AF_0264 SM00485 Xeroderma pigmentosum G N-region AF_0265 SM00852 Probable molybdopterin binding domain AF_0275 SM00710 Parallel beta-helix repeats AF_0275 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AF_0277 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_0277 SM00091 PAS domain AF_0277 SM00388 His Kinase A (phosphoacceptor) domain AF_0286 SM00893 Electron transfer flavoprotein domain AF_0287 SM00893 Electron transfer flavoprotein domain AF_0290 SM00382 ATPases associated with a variety of cellular activities AF_0296 SM00670 Large family of predicted nucleotide-binding domains AF_0313 SM00670 Large family of predicted nucleotide-binding domains AF_0315 SM00670 Large family of predicted nucleotide-binding domains AF_0317 SM00670 Large family of predicted nucleotide-binding domains AF_0318 SM00670 Large family of predicted nucleotide-binding domains AF_0332 SM00116 Domain in cystathionine beta-synthase and other proteins. AF_0340 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain AF_0358 SM00487 DEAD-like helicases superfamily AF_0358 SM00490 helicase superfamily c-terminal domain AF_0362 SM00651 snRNP Sm proteins AF_0363 SM00347 helix_turn_helix multiple antibiotic resistance protein AF_0364 SM00382 ATPases associated with a variety of cellular activities AF_0371 SM00478 endonuclease III AF_0383 SM00465 GIY-YIG type nucleases (URI domain) AF_0393 SM00382 ATPases associated with a variety of cellular activities AF_0400 SM00450 Rhodanese Homology Domain AF_0410 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_0410 SM00091 PAS domain AF_0410 SM00388 His Kinase A (phosphoacceptor) domain AF_0411 SM00840 AF_0411 AF_0430 SM00382 ATPases associated with a variety of cellular activities AF_0439 SM00344 helix_turn_helix ASNC type AF_0446 SM00769 Water Stress and Hypersensitive response AF_0447 SM00769 Water Stress and Hypersensitive response AF_0448 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AF_0448 SM00091 PAS domain AF_0448 SM00388 His Kinase A (phosphoacceptor) domain AF_0449 SM00448 cheY-homologous receiver domain AF_0450 SM00091 PAS domain AF_0450 SM00387 Histidine kinase-like ATPases AF_0452 SM00382 ATPases associated with a variety of cellular activities AF_0465 SM00434 DNA Topoisomerase IV AF_0472 SM00966 SpoVT / AbrB like domain AF_0474 SM00344 helix_turn_helix ASNC type AF_0474 SM00746 metallochaperone-like domain AF_0476 SM00966 SpoVT / AbrB like domain AF_0477 SM00382 ATPases associated with a variety of cellular activities AF_0478 SM00849 Metallo-beta-lactamase superfamily AF_0480 SM01007 Class II Aldolase and Adducin N-terminal domain AF_0482 SM00322 K homology RNA-binding domain AF_0482 SM00849 Metallo-beta-lactamase superfamily AF_0482 SM01027 Beta-Casp domain AF_0490 SM00948 Proteasome subunit A N-terminal signature Add an annotation AF_0492 SM00316 Ribosomal protein S1-like RNA-binding domain AF_0492 SM00322 K homology RNA-binding domain AF_0497 SM00486 DNA polymerase type-B family AF_0505 SM00481 DNA polymerase alpha chain like domain AF_0511 SM01405 AF_0511 AF_0517 SM00350 minichromosome maintenance proteins AF_0517 SM00382 ATPases associated with a variety of cellular activities AF_0527 SM00316 Ribosomal protein S1-like RNA-binding domain AF_0530 SM00433 TopoisomeraseII AF_0532 SM00849 Metallo-beta-lactamase superfamily AF_0532 SM01027 Beta-Casp domain AF_0534 SM00849 Metallo-beta-lactamase superfamily AF_0535 SM00864 Tubulin/FtsZ family, GTPase domain AF_0535 SM00865 Tubulin/FtsZ family, C-terminal domain AF_0537 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AF_0537 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AF_0538 SM00649 Ribosomal protein L11/L12 AF_0570 SM00864 Tubulin/FtsZ family, GTPase domain AF_0570 SM00865 Tubulin/FtsZ family, C-terminal domain AF_0574 SM00888 EF-1 guanine nucleotide exchange domain AF_0575 SM00849 Metallo-beta-lactamase superfamily AF_0584 SM00344 helix_turn_helix ASNC type AF_0587 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AF_0589 SM01400 AF_0589 AF_0591 SM00670 Large family of predicted nucleotide-binding domains AF_0593 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AF_0596 SM00984 UDP binding domain AF_0622 SM00382 ATPases associated with a variety of cellular activities AF_0622 SM00962 SRP54-type protein, GTPase domain AF_0622 SM00963 SRP54-type protein, helical bundle domain AF_0628 SM01329 AF_0628 AF_0638 SM00382 ATPases associated with a variety of cellular activities AF_0645 SM01376 AF_0645 AF_0647 SM01329 AF_0647 AF_0652 SM00387 Histidine kinase-like ATPases AF_0673 SM00422 helix_turn_helix, mercury resistance AF_0680 SM00382 ATPases associated with a variety of cellular activities AF_0695 SM01074 CDC6, C terminal AF_0708 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AF_0731 SM00382 ATPases associated with a variety of cellular activities AF_0756 SM01131 AF_0756 AF_0757 SM00531 Transcription initiation factor IIE AF_0766 SM00746 metallochaperone-like domain AF_0767 SM00562 AF_0767 AF_0770 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_0770 SM00091 PAS domain AF_0770 SM00387 Histidine kinase-like ATPases AF_0770 SM00388 His Kinase A (phosphoacceptor) domain AF_0777 SM00652 eukaryotic translation initiation factor 1A AF_0783 SM00709 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins. AF_0794 SM00966 SpoVT / AbrB like domain AF_0797 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_0798 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_0801 SM01386 AF_0801 AF_0801 SM01387 AF_0801 AF_0814 SM00382 ATPases associated with a variety of cellular activities AF_0822 SM00382 ATPases associated with a variety of cellular activities AF_0823 SM00382 ATPases associated with a variety of cellular activities AF_0830 SM00903 Flavin reductase like domain AF_0837 SM01194 AF_0837 AF_0841 SM00788 Adenylosuccinate synthetase AF_0847 SM00116 Domain in cystathionine beta-synthase and other proteins. AF_0848 SM00116 Domain in cystathionine beta-synthase and other proteins. AF_0861 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AF_0875 SM00651 snRNP Sm proteins AF_0879 SM00981 AF_0879 AF_0882 SM00870 AF_0882 AF_0886 SM00996 S-adenosyl-L-homocysteine hydrolase AF_0886 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AF_0887 SM00382 ATPases associated with a variety of cellular activities AF_0893 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_0893 SM00091 PAS domain AF_0893 SM00387 Histidine kinase-like ATPases AF_0894 SM00836 DALR anticodon binding domain AF_0894 SM01016 Arginyl tRNA synthetase N terminal dom AF_0905 SM00493 AF_0905 AF_0910 SM01130 AF_0910 AF_0918 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_0929 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AF_0930 SM00852 Probable molybdopterin binding domain AF_0931 SM00852 Probable molybdopterin binding domain AF_0932 SM00881 CoA binding domain AF_0938 SM01403 AF_0938 AF_0949 SM01230 AF_0949 AF_0955 SM00028 Tetratricopeptide repeats AF_0957 SM00917 LeuA allosteric (dimerisation) domain AF_0958 SM00382 ATPases associated with a variety of cellular activities AF_0959 SM00382 ATPases associated with a variety of cellular activities AF_0971 SM00100 Cyclic nucleotide-monophosphate binding domain AF_0971 SM00116 Domain in cystathionine beta-synthase and other proteins. AF_0972 SM00479 AF_0972 AF_0978 SM00938 Nitrogen regulatory protein P-II AF_0981 SM00382 ATPases associated with a variety of cellular activities AF_0984 SM00382 ATPases associated with a variety of cellular activities AF_0993 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AF_0993 SM00382 ATPases associated with a variety of cellular activities AF_0994 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AF_0998 SM00419 helix_turn_helix, cAMP Regulatory protein AF_1006 SM00382 ATPases associated with a variety of cellular activities AF_1011 SM00154 AN1-like Zinc finger AF_1012 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_1018 SM00382 ATPases associated with a variety of cellular activities AF_1021 SM00382 ATPases associated with a variety of cellular activities AF_1024 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AF_1024 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AF_1024 SM00487 DEAD-like helicases superfamily AF_1024 SM00493 AF_1024 AF_1033 SM00933 AF_1033 AF_1034 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_1034 SM00091 PAS domain AF_1034 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AF_1034 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AF_1035 SM00091 PAS domain AF_1035 SM00388 His Kinase A (phosphoacceptor) domain AF_1036 SM00091 PAS domain AF_1037 SM00138 Methyltransferase, chemotaxis proteins AF_1040 SM00073 Histidine Phosphotransfer domain AF_1040 SM00260 Two component signalling adaptor domain AF_1040 SM00387 Histidine kinase-like ATPases AF_1040 SM01231 AF_1040 AF_1041 SM00448 cheY-homologous receiver domain AF_1042 SM00448 cheY-homologous receiver domain AF_1044 SM00260 Two component signalling adaptor domain AF_1045 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_1045 SM00091 PAS domain AF_1045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AF_1045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AF_1046 SM00388 His Kinase A (phosphoacceptor) domain AF_1063 SM00448 cheY-homologous receiver domain AF_1064 SM00382 ATPases associated with a variety of cellular activities AF_1065 SM01022 AF_1065 AF_1077 SM00670 Large family of predicted nucleotide-binding domains AF_1089 SM00670 Large family of predicted nucleotide-binding domains AF_1091 SM00670 Large family of predicted nucleotide-binding domains AF_1106 SM00879 AF_1106 AF_1113 SM01402 AF_1113 AF_1116 SM01389 AF_1116 AF_1117 SM00316 Ribosomal protein S1-like RNA-binding domain AF_1121 SM00344 helix_turn_helix ASNC type AF_1131 SM01409 AF_1131 AF_1132 SM01192 AF_1132 AF_1132 SM01193 AF_1132 AF_1136 SM00382 ATPases associated with a variety of cellular activities AF_1139 SM00382 ATPases associated with a variety of cellular activities AF_1148 SM00344 helix_turn_helix ASNC type AF_1149 SM00487 DEAD-like helicases superfamily AF_1149 SM00490 helicase superfamily c-terminal domain AF_1157 SM01209 AF_1157 AF_1157 SM01210 AF_1157 AF_1170 SM00382 ATPases associated with a variety of cellular activities AF_1184 SM00091 PAS domain AF_1184 SM00387 Histidine kinase-like ATPases AF_1184 SM00388 His Kinase A (phosphoacceptor) domain AF_1185 SM00930 AF_1185 AF_1186 SM00116 Domain in cystathionine beta-synthase and other proteins. AF_1187 SM00154 AN1-like Zinc finger AF_1189 SM00355 zinc finger AF_1192 SM00881 CoA binding domain AF_1195 SM00382 ATPases associated with a variety of cellular activities AF_1199 SM00882 Coenzyme A transferase AF_1203 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AF_1207 SM00822 AF_1207 AF_1211 SM00881 CoA binding domain AF_1215 SM00864 Tubulin/FtsZ family, GTPase domain AF_1220 SM01194 AF_1220 AF_1224 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AF_1233 SM00481 DNA polymerase alpha chain like domain AF_1235 SM00440 C2C2 Zinc finger AF_1235 SM00661 RNA polymerase subunit 9 AF_1247 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_1256 SM00448 cheY-homologous receiver domain AF_1259 SM00116 Domain in cystathionine beta-synthase and other proteins. AF_1259 SM00470 ParB-like nuclease domain AF_1260 SM01211 AF_1260 AF_1264 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AF_1265 SM00849 Metallo-beta-lactamase superfamily AF_1270 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AF_1271 SM01001 AIR carboxylase AF_1273 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AF_1274 SM00851 MGS-like domain AF_1274 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AF_1275 SM01001 AIR carboxylase AF_1285 SM00382 ATPases associated with a variety of cellular activities AF_1297 SM00382 ATPases associated with a variety of cellular activities AF_1297 SM01072 Cell division protein 48 (CDC48) domain 2 AF_1297 SM01073 Cell division protein 48 (CDC48) N-terminal domain AF_1298 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AF_1299 SM00385 domain present in cyclins, TFIIB and Retinoblastoma AF_1300 SM00382 ATPases associated with a variety of cellular activities AF_1305 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AF_1311 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_1318 SM00950 AF_1318 AF_1330 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_1337 SM00316 Ribosomal protein S1-like RNA-binding domain AF_1341 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AF_1342 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AF_1343 SM00849 Metallo-beta-lactamase superfamily AF_1350 SM00849 Metallo-beta-lactamase superfamily AF_1355 SM00966 SpoVT / AbrB like domain AF_1359 SM00382 ATPases associated with a variety of cellular activities AF_1361 SM00226 Low molecular weight phosphatase family AF_1384 SM00448 cheY-homologous receiver domain AF_1389 SM00382 ATPases associated with a variety of cellular activities AF_1390 SM00382 ATPases associated with a variety of cellular activities AF_1398 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AF_1399 SM00564 beta-propeller repeat AF_1401 SM00382 ATPases associated with a variety of cellular activities AF_1405 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AF_1406 SM00487 DEAD-like helicases superfamily AF_1412 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AF_1413 SM00060 Fibronectin type 3 domain AF_1413 SM00710 Parallel beta-helix repeats AF_1413 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AF_1415 SM00116 Domain in cystathionine beta-synthase and other proteins. AF_1419 SM01400 AF_1419 AF_1420 SM00244 prohibitin homologues AF_1423 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AF_1424 SM00873 B3/4 domain AF_1424 SM00874 tRNA synthetase B5 domain AF_1430 SM01377 AF_1430 AF_1432 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AF_1440 SM00845 GatB domain AF_1444 SM00327 von Willebrand factor (vWF) type A domain AF_1448 SM00344 helix_turn_helix ASNC type AF_1452 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_1452 SM00091 PAS domain AF_1452 SM00387 Histidine kinase-like ATPases AF_1454 SM00154 AN1-like Zinc finger AF_1458 SM00487 DEAD-like helicases superfamily AF_1458 SM00490 helicase superfamily c-terminal domain AF_1458 SM00891 ERCC4 domain AF_1467 SM00387 Histidine kinase-like ATPases AF_1469 SM00382 ATPases associated with a variety of cellular activities AF_1472 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_1472 SM00091 PAS domain AF_1472 SM00388 His Kinase A (phosphoacceptor) domain AF_1472 SM00448 cheY-homologous receiver domain AF_1473 SM00448 cheY-homologous receiver domain AF_1483 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AF_1483 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_1483 SM00091 PAS domain AF_1483 SM00387 Histidine kinase-like ATPases AF_1483 SM00388 His Kinase A (phosphoacceptor) domain AF_1498 SM00849 Metallo-beta-lactamase superfamily AF_1500 SM00960 Roadblock/LC7 domain AF_1503 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AF_1506 SM00859 Semialdehyde dehydrogenase, NAD binding domain AF_1509 SM00849 Metallo-beta-lactamase superfamily AF_1511 SM00881 CoA binding domain AF_1515 SM00387 Histidine kinase-like ATPases AF_1515 SM00388 His Kinase A (phosphoacceptor) domain AF_1520 SM00849 Metallo-beta-lactamase superfamily AF_1521 SM00506 Appr-1"-p processing enzyme AF_1523 SM01022 AF_1523 AF_1539 SM00881 CoA binding domain AF_1544 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AF_1550 SM00481 DNA polymerase alpha chain like domain AF_1558 SM00968 SMC proteins Flexible Hinge Domain AF_1564 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AF_1583 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_1585 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AF_1608 SM00382 ATPases associated with a variety of cellular activities AF_1609 SM00946 Prolyl-tRNA synthetase, C-terminal AF_1614 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AF_1620 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_1620 SM00091 PAS domain AF_1620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AF_1622 SM00344 helix_turn_helix ASNC type AF_1627 SM00530 Helix-turn-helix XRE-family like proteins AF_1639 SM00387 Histidine kinase-like ATPases AF_1639 SM00388 His Kinase A (phosphoacceptor) domain AF_1652 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AF_1684 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_1692 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AF_1692 SM00478 endonuclease III AF_1692 SM00525 AF_1692 AF_1697 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AF_1708 SM00487 DEAD-like helicases superfamily AF_1709 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AF_1721 SM00387 Histidine kinase-like ATPases AF_1721 SM00388 His Kinase A (phosphoacceptor) domain AF_1723 SM00344 helix_turn_helix ASNC type AF_1726 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AF_1727 SM00919 Malic enzyme, NAD binding domain AF_1727 SM01274 AF_1727 AF_1732 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AF_1743 SM00344 helix_turn_helix ASNC type AF_1747 SM00938 Nitrogen regulatory protein P-II AF_1748 SM00849 Metallo-beta-lactamase superfamily AF_1750 SM00938 Nitrogen regulatory protein P-II AF_1756 SM01078 AF_1756 AF_1766 SM00062 Bacterial periplasmic substrate-binding proteins AF_1766 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_1766 SM00091 PAS domain AF_1766 SM00388 His Kinase A (phosphoacceptor) domain AF_1770 SM00382 ATPases associated with a variety of cellular activities AF_1771 SM00382 ATPases associated with a variety of cellular activities AF_1783 SM00650 Ribosomal RNA adenine dimethylases AF_1785 SM00529 Helix-turn-helix diphteria tox regulatory element AF_1786 SM00903 Flavin reductase like domain AF_1787 SM00530 Helix-turn-helix XRE-family like proteins AF_1793 SM00530 Helix-turn-helix XRE-family like proteins AF_1797 SM00966 SpoVT / AbrB like domain AF_1804 SM00090 RIO-like kinase AF_1805 SM00322 K homology RNA-binding domain AF_1806 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AF_1806 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AF_1806 SM00493 AF_1806 AF_1807 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AF_1811 SM00851 MGS-like domain AF_1812 SM01022 AF_1812 AF_1813 SM00382 ATPases associated with a variety of cellular activities AF_1819 SM00382 ATPases associated with a variety of cellular activities AF_1822 SM00156 Protein phosphatase 2A homologues, catalytic domain. AF_1841 SM00382 ATPases associated with a variety of cellular activities AF_1850 SM00849 Metallo-beta-lactamase superfamily AF_1853 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AF_1874 SM00487 DEAD-like helicases superfamily AF_1874 SM00490 helicase superfamily c-terminal domain AF_1884 SM00382 ATPases associated with a variety of cellular activities AF_1888 SM00663 RNA polymerase I subunit A N-terminus AF_1891 SM00322 K homology RNA-binding domain AF_1894 SM00838 Elongation factor G C-terminus AF_1894 SM00889 Elongation factor G, domain IV AF_1898 SM00448 cheY-homologous receiver domain AF_1899 SM00493 AF_1899 AF_1901 SM01415 AF_1901 AF_1907 SM01416 AF_1907 AF_1908 SM01393 AF_1908 AF_1913 SM00363 S4 RNA-binding domain AF_1913 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AF_1914 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AF_1915 SM01374 AF_1915 AF_1917 SM00538 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins. AF_1919 SM00322 K homology RNA-binding domain AF_1922 SM01382 AF_1922 AF_1922 SM01383 AF_1922 AF_1938 SM00881 CoA binding domain AF_1946 SM00645 Papain family cysteine protease AF_1951 SM00322 K homology RNA-binding domain AF_1951 SM00382 ATPases associated with a variety of cellular activities AF_1951 SM00670 Large family of predicted nucleotide-binding domains AF_1952 SM00730 Presenilin, signal peptide peptidase, family AF_1960 SM00382 ATPases associated with a variety of cellular activities AF_1970 SM00028 Tetratricopeptide repeats AF_1974 SM01004 Delta-aminolevulinic acid dehydratase AF_1976 SM00382 ATPases associated with a variety of cellular activities AF_1977 SM00530 Helix-turn-helix XRE-family like proteins AF_1982 SM00382 ATPases associated with a variety of cellular activities AF_1984 SM00529 Helix-turn-helix diphteria tox regulatory element AF_1988 SM01118 AF_1988 AF_2000 SM00996 S-adenosyl-L-homocysteine hydrolase AF_2000 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AF_2006 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_2009 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_2011 SM00966 SpoVT / AbrB like domain AF_2012 SM00670 Large family of predicted nucleotide-binding domains AF_2032 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_2032 SM00091 PAS domain AF_2032 SM00388 His Kinase A (phosphoacceptor) domain AF_2060 SM00382 ATPases associated with a variety of cellular activities AF_2062 SM00382 ATPases associated with a variety of cellular activities AF_2062 SM00962 SRP54-type protein, GTPase domain AF_2062 SM00963 SRP54-type protein, helical bundle domain AF_2065 SM00654 translation initiation factor 6 AF_2066 SM01380 AF_2066 AF_2069 SM01413 AF_2069 AF_2070 SM01103 AF_2070 AF_2071 SM00859 Semialdehyde dehydrogenase, NAD binding domain AF_2072 SM01152 AF_2072 AF_2087 SM01206 AF_2087 AF_2090-C SM00710 Parallel beta-helix repeats AF_2096 SM00382 ATPases associated with a variety of cellular activities AF_2098 SM00382 ATPases associated with a variety of cellular activities AF_2098 SM01072 Cell division protein 48 (CDC48) domain 2 AF_2098 SM01073 Cell division protein 48 (CDC48) N-terminal domain AF_2099 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AF_2106 SM00419 helix_turn_helix, cAMP Regulatory protein AF_2109 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AF_2109 SM00091 PAS domain AF_2109 SM00387 Histidine kinase-like ATPases AF_2109 SM00388 His Kinase A (phosphoacceptor) domain AF_2116 SM00845 GatB domain AF_2117 SM00478 endonuclease III AF_2118 SM00116 Domain in cystathionine beta-synthase and other proteins. AF_2118 SM00530 Helix-turn-helix XRE-family like proteins AF_2136 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AF_2148 SM00849 Metallo-beta-lactamase superfamily AF_2155 SM00849 Metallo-beta-lactamase superfamily AF_2178 SM00981 AF_2178 AF_2184 SM00363 S4 RNA-binding domain AF_2185 SM00881 CoA binding domain AF_2189 SM00966 SpoVT / AbrB like domain AF_2204 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_2226 SM00981 AF_2226 AF_2242 SM00998 Adenylosuccinate lyase C-terminus AF_2249 SM00448 cheY-homologous receiver domain AF_2251 SM00852 Probable molybdopterin binding domain AF_2254 SM00487 DEAD-like helicases superfamily AF_2254 SM00490 helicase superfamily c-terminal domain AF_2255 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AF_2266 SM00849 Metallo-beta-lactamase superfamily AF_2271 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AF_2271 SM00419 helix_turn_helix, cAMP Regulatory protein AF_2277 SM00986 Uracil DNA glycosylase superfamily AF_2277 SM00987 UreE urease accessory protein, C-terminal domain AF_2281 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain AF_2282 SM00662 RNA polymerases D AF_2284 SM00363 S4 RNA-binding domain AF_2284 SM01390 AF_2284 AF_2287 SM01240 AF_2287 AF_2319 SM01384 AF_2319 AF_2320 SM01397 AF_2320 AF_2326 SM00653 domain present in translation initiation factor eIF2B and eIF5 AF_2350 SM00487 DEAD-like helicases superfamily AF_2350 SM00490 helicase superfamily c-terminal domain AF_2357 SM00460 Transglutaminase/protease-like homologues AF_2359 SM00966 SpoVT / AbrB like domain AF_2360 SM00670 Large family of predicted nucleotide-binding domains AF_2364 SM00382 ATPases associated with a variety of cellular activities AF_2384 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AF_2395 SM00529 Helix-turn-helix diphteria tox regulatory element AF_2396 SM00899 AF_2396 AF_2400 SM00460 Transglutaminase/protease-like homologues AF_2402 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_2406 SM00487 DEAD-like helicases superfamily AF_2406 SM00490 helicase superfamily c-terminal domain AF_2407 SM00849 Metallo-beta-lactamase superfamily AF_2413 SM00729 Elongator protein 3, MiaB family, Radical SAM AF_2414 SM00530 Helix-turn-helix XRE-family like proteins AF_2418 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AF_2418 SM00891 ERCC4 domain AF_2419 SM00448 cheY-homologous receiver domain AF_2420 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AF_2420 SM00091 PAS domain AF_2420 SM00388 His Kinase A (phosphoacceptor) domain AF_2426 SM00090 RIO-like kinase AF_2430 SM00226 Low molecular weight phosphatase family