locus-tag class description JRI60_00005 PF01134 Glucose inhibited division protein A JRI60_00005 PF13932 GidA associated domain JRI60_00010 PF02527 rRNA small subunit methyltransferase G JRI60_00020 PF01926 50S ribosome-binding GTPase JRI60_00020 PF13167 GTP-binding GTPase N-terminal JRI60_00020 PF16360 GTP-binding GTPase Middle Region JRI60_00030 PF13614 AAA domain JRI60_00035 PF02195 ParB-like nuclease domain JRI60_00035 PF17762 HTH domain found in ParB protein JRI60_00050 PF07729 FCD domain JRI60_00050 PF00392 Bacterial regulatory proteins, gntR family JRI60_00055 PF10017 Histidine-specific methyltransferase, SAM-dependent JRI60_00060 PF03781 Sulfatase-modifying factor enzyme 1 JRI60_00060 PF12867 DinB superfamily JRI60_00075 PF00571 CBS domain JRI60_00075 PF02163 Peptidase family M50 JRI60_00080 PF00571 CBS domain JRI60_00115 PF12697 Alpha/beta hydrolase family JRI60_00135 PF00069 Protein kinase domain JRI60_00135 PF07238 PilZ domain JRI60_00155 PF03773 Predicted permease JRI60_00175 PF13247 4Fe-4S dicluster domain JRI60_00175 PF00037 4Fe-4S binding domain JRI60_00205 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JRI60_00205 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JRI60_00210 PF00115 Cytochrome C and Quinol oxidase polypeptide I JRI60_00210 PF00510 Cytochrome c oxidase subunit III JRI60_00215 PF00510 Cytochrome c oxidase subunit III JRI60_00245 PF13302 Acetyltransferase (GNAT) domain JRI60_00250 PF00392 Bacterial regulatory proteins, gntR family JRI60_00250 PF00155 Aminotransferase class I and II JRI60_00255 PF02627 Carboxymuconolactone decarboxylase family JRI60_00270 PF02798 Glutathione S-transferase, N-terminal domain JRI60_00270 PF00043 Glutathione S-transferase, C-terminal domain JRI60_00335 PF00264 Common central domain of tyrosinase JRI60_00345 PF00005 ABC transporter JRI60_00400 PF01425 Amidase JRI60_00405 PF17755 UvrA DNA-binding domain JRI60_00410 PF02463 RecF/RecN/SMC N terminal domain JRI60_00430 PF10851 Protein of unknown function (DUF2652) JRI60_00445 PF00440 Bacterial regulatory proteins, tetR family JRI60_00450 PF00106 short chain dehydrogenase JRI60_00475 PF08719 Domain of unknown function (DUF1768) JRI60_00480 PF00176 SNF2 family N-terminal domain JRI60_00480 PF00271 Helicase conserved C-terminal domain JRI60_00480 PF12419 SNF2 Helicase protein JRI60_00490 PF01494 FAD binding domain JRI60_00505 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_00535 PF03466 LysR substrate binding domain JRI60_00535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_00540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_00540 PF03466 LysR substrate binding domain JRI60_00550 PF03466 LysR substrate binding domain JRI60_00550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_00555 PF00248 Aldo/keto reductase family JRI60_00560 PF01568 Molydopterin dinucleotide binding domain JRI60_00560 PF00384 Molybdopterin oxidoreductase JRI60_00560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JRI60_00585 PF00440 Bacterial regulatory proteins, tetR family JRI60_00585 PF16859 Tetracyclin repressor-like, C-terminal domain JRI60_00590 PF12680 SnoaL-like domain JRI60_00595 PF01370 NAD dependent epimerase/dehydratase family JRI60_00610 PF04679 ATP dependent DNA ligase C terminal region JRI60_00610 PF01068 ATP dependent DNA ligase domain JRI60_00610 PF13298 DNA polymerase Ligase (LigD) JRI60_00615 PF04679 ATP dependent DNA ligase C terminal region JRI60_00615 PF01068 ATP dependent DNA ligase domain JRI60_00630 PF00512 His Kinase A (phospho-acceptor) domain JRI60_00630 PF18698 Histidine kinase sensor domain JRI60_00630 PF00672 HAMP domain JRI60_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_00645 PF00069 Protein kinase domain JRI60_00655 PF00512 His Kinase A (phospho-acceptor) domain JRI60_00655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_00655 PF00672 HAMP domain JRI60_00680 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_00680 PF00512 His Kinase A (phospho-acceptor) domain JRI60_00680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_00680 PF00072 Response regulator receiver domain JRI60_00695 PF08446 PAS fold JRI60_00695 PF01590 GAF domain JRI60_00695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_00695 PF00360 Phytochrome region JRI60_00695 PF00512 His Kinase A (phospho-acceptor) domain JRI60_00700 PF01209 ubiE/COQ5 methyltransferase family JRI60_00715 PF00958 GMP synthase C terminal domain JRI60_00715 PF13673 Acetyltransferase (GNAT) domain JRI60_00715 PF13302 Acetyltransferase (GNAT) domain JRI60_00715 PF03352 Methyladenine glycosylase JRI60_00715 PF00117 Glutamine amidotransferase class-I JRI60_00720 PF07683 Cobalamin synthesis protein cobW C-terminal domain JRI60_00720 PF02492 CobW/HypB/UreG, nucleotide-binding domain JRI60_00725 PF00375 Sodium:dicarboxylate symporter family JRI60_00755 PF00857 Isochorismatase family JRI60_00825 PF00990 Diguanylate cyclase, GGDEF domain JRI60_00840 PF00005 ABC transporter JRI60_00845 PF13472 GDSL-like Lipase/Acylhydrolase family JRI60_00855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_00855 PF03466 LysR substrate binding domain JRI60_00865 PF06983 3-demethylubiquinone-9 3-methyltransferase JRI60_00885 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_00885 PF02013 Cellulose or protein binding domain JRI60_00910 PF00106 short chain dehydrogenase JRI60_00915 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JRI60_00915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JRI60_00925 PF02798 Glutathione S-transferase, N-terminal domain JRI60_00930 PF04229 GrpB protein JRI60_00945 PF01047 MarR family JRI60_00950 PF00106 short chain dehydrogenase JRI60_00965 PF12833 Helix-turn-helix domain JRI60_00970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JRI60_00975 PF00135 Carboxylesterase family JRI60_00990 PF07690 Major Facilitator Superfamily JRI60_00995 PF08220 DeoR-like helix-turn-helix domain JRI60_00995 PF00455 DeoR C terminal sensor domain JRI60_01000 PF00202 Aminotransferase class-III JRI60_01010 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_01010 PF00107 Zinc-binding dehydrogenase JRI60_01020 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_01020 PF14310 Fibronectin type III-like domain JRI60_01020 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_01040 PF00248 Aldo/keto reductase family JRI60_01045 PF01638 HxlR-like helix-turn-helix JRI60_01055 PF00199 Catalase JRI60_01075 PF01547 Bacterial extracellular solute-binding protein JRI60_01080 PF17137 Domain of unknown function (DUF5110) JRI60_01080 PF16338 Domain of unknown function (DUF4968) JRI60_01080 PF13802 Galactose mutarotase-like JRI60_01080 PF01055 Glycosyl hydrolases family 31 JRI60_01110 PF00561 alpha/beta hydrolase fold JRI60_01135 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_01135 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_01135 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_01135 PF03413 Peptidase propeptide and YPEB domain JRI60_01150 PF00664 ABC transporter transmembrane region JRI60_01150 PF03412 Peptidase C39 family JRI60_01150 PF00005 ABC transporter JRI60_01170 PF03793 PASTA domain JRI60_01170 PF00069 Protein kinase domain JRI60_01185 PF13194 Domain of unknown function (DUF4010) JRI60_01200 PF04754 Putative transposase, YhgA-like JRI60_01210 PF07690 Major Facilitator Superfamily JRI60_01235 PF00892 EamA-like transporter family JRI60_01245 PF01070 FMN-dependent dehydrogenase JRI60_01265 PF00248 Aldo/keto reductase family JRI60_01270 PF03734 L,D-transpeptidase catalytic domain JRI60_01275 PF00248 Aldo/keto reductase family JRI60_01280 PF17202 Single cache domain 3 JRI60_01280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_01280 PF00672 HAMP domain JRI60_01305 PF07859 alpha/beta hydrolase fold JRI60_01310 PF07715 TonB-dependent Receptor Plug Domain JRI60_01310 PF00593 TonB dependent receptor JRI60_01315 PF03929 PepSY-associated TM region JRI60_01330 PF04101 Glycosyltransferase family 28 C-terminal domain JRI60_01335 PF00069 Protein kinase domain JRI60_01335 PF03793 PASTA domain JRI60_01340 PF00067 Cytochrome P450 JRI60_01345 PF09265 Cytokinin dehydrogenase 1, FAD and cytokinin binding JRI60_01345 PF01565 FAD binding domain JRI60_01350 PF01627 Hpt domain JRI60_01350 PF00672 HAMP domain JRI60_01350 PF17149 Periplasmic sensor domain found in signal transduction proteins JRI60_01350 PF00512 His Kinase A (phospho-acceptor) domain JRI60_01350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_01350 PF00072 Response regulator receiver domain JRI60_01360 PF00067 Cytochrome P450 JRI60_01365 PF00550 Phosphopantetheine attachment site JRI60_01365 PF00668 Condensation domain JRI60_01365 PF13193 AMP-binding enzyme C-terminal domain JRI60_01365 PF00668 Condensation domain JRI60_01365 PF00550 Phosphopantetheine attachment site JRI60_01365 PF00501 AMP-binding enzyme JRI60_01365 PF00501 AMP-binding enzyme JRI60_01365 PF13193 AMP-binding enzyme C-terminal domain JRI60_01370 PF00550 Phosphopantetheine attachment site JRI60_01370 PF00501 AMP-binding enzyme JRI60_01370 PF13193 AMP-binding enzyme C-terminal domain JRI60_01370 PF00668 Condensation domain JRI60_01375 PF13492 GAF domain JRI60_01375 PF13185 GAF domain JRI60_01375 PF07730 Histidine kinase JRI60_01375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_01380 PF00072 Response regulator receiver domain JRI60_01380 PF00196 Bacterial regulatory proteins, luxR family JRI60_01400 PF00561 alpha/beta hydrolase fold JRI60_01400 PF08386 TAP-like protein JRI60_01415 PF00069 Protein kinase domain JRI60_01415 PF03793 PASTA domain JRI60_01425 PF00753 Metallo-beta-lactamase superfamily JRI60_01445 PF00069 Protein kinase domain JRI60_01450 PF03129 Anticodon binding domain JRI60_01450 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JRI60_01460 PF01979 Amidohydrolase family JRI60_01475 PF00459 Inositol monophosphatase family JRI60_01485 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_01485 PF17863 AAA lid domain JRI60_01495 PF12728 Helix-turn-helix domain JRI60_01570 PF00378 Enoyl-CoA hydratase/isomerase JRI60_01580 PF01063 Amino-transferase class IV JRI60_01585 PF00392 Bacterial regulatory proteins, gntR family JRI60_01585 PF00155 Aminotransferase class I and II JRI60_01610 PF00205 Thiamine pyrophosphate enzyme, central domain JRI60_01610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JRI60_01610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JRI60_01615 PF00107 Zinc-binding dehydrogenase JRI60_01615 PF13823 Alcohol dehydrogenase GroES-associated JRI60_01615 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_01630 PF00672 HAMP domain JRI60_01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_01630 PF18698 Histidine kinase sensor domain JRI60_01630 PF00512 His Kinase A (phospho-acceptor) domain JRI60_01630 PF00989 PAS fold JRI60_01635 PF00067 Cytochrome P450 JRI60_01640 PF04116 Fatty acid hydroxylase superfamily JRI60_01650 PF01494 FAD binding domain JRI60_01655 PF12833 Helix-turn-helix domain JRI60_01655 PF02311 AraC-like ligand binding domain JRI60_01685 PF00483 Nucleotidyl transferase JRI60_01710 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JRI60_01710 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JRI60_01710 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JRI60_01710 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JRI60_01715 PF00067 Cytochrome P450 JRI60_01730 PF02634 FdhD/NarQ family JRI60_01735 PF03205 Molybdopterin guanine dinucleotide synthesis protein B JRI60_01740 PF03453 MoeA N-terminal region (domain I and II) JRI60_01740 PF03454 MoeA C-terminal region (domain IV) JRI60_01740 PF00994 Probable molybdopterin binding domain JRI60_01745 PF12804 MobA-like NTP transferase domain JRI60_01775 PF00561 alpha/beta hydrolase fold JRI60_01805 PF07238 PilZ domain JRI60_01805 PF00069 Protein kinase domain JRI60_01815 PF01565 FAD binding domain JRI60_01815 PF02913 FAD linked oxidases, C-terminal domain JRI60_01820 PF07714 Protein tyrosine kinase JRI60_01830 PF00072 Response regulator receiver domain JRI60_01830 PF02954 Bacterial regulatory protein, Fis family JRI60_01830 PF00158 Sigma-54 interaction domain JRI60_01855 PF13247 4Fe-4S dicluster domain JRI60_01855 PF12800 4Fe-4S binding domain JRI60_01890 PF00106 short chain dehydrogenase JRI60_01900 PF01205 Uncharacterized protein family UPF0029 JRI60_01900 PF09186 Domain of unknown function (DUF1949) JRI60_01910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JRI60_01910 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_01935 PF01619 Proline dehydrogenase JRI60_01940 PF00561 alpha/beta hydrolase fold JRI60_01960 PF03301 Tryptophan 2,3-dioxygenase JRI60_01985 PF00512 His Kinase A (phospho-acceptor) domain JRI60_01985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_01990 PF00072 Response regulator receiver domain JRI60_01990 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_02000 PF00582 Universal stress protein family JRI60_02015 PF01661 Macro domain JRI60_02025 PF00072 Response regulator receiver domain JRI60_02025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_02025 PF00512 His Kinase A (phospho-acceptor) domain JRI60_02025 PF09308 LuxQ, periplasmic JRI60_02030 PF00182 Chitinase class I JRI60_02060 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_02060 PF00571 CBS domain JRI60_02065 PF00067 Cytochrome P450 JRI60_02070 PF17886 HSP20-like domain found in ArsA JRI60_02070 PF02374 Anion-transporting ATPase JRI60_02075 PF02374 Anion-transporting ATPase JRI60_02085 PF00512 His Kinase A (phospho-acceptor) domain JRI60_02085 PF00672 HAMP domain JRI60_02085 PF18698 Histidine kinase sensor domain JRI60_02085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_02095 PF00596 Class II Aldolase and Adducin N-terminal domain JRI60_02100 PF01008 Initiation factor 2 subunit family JRI60_02105 PF01048 Phosphorylase superfamily JRI60_02120 PF08271 TFIIB zinc-binding JRI60_02150 PF07883 Cupin domain JRI60_02155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_02155 PF03466 LysR substrate binding domain JRI60_02170 PF00067 Cytochrome P450 JRI60_02175 PF00155 Aminotransferase class I and II JRI60_02220 PF01207 Dihydrouridine synthase (Dus) JRI60_02235 PF00753 Metallo-beta-lactamase superfamily JRI60_02250 PF09587 Bacterial capsule synthesis protein PGA_cap JRI60_02275 PF07690 Major Facilitator Superfamily JRI60_02290 PF14497 Glutathione S-transferase, C-terminal domain JRI60_02290 PF02798 Glutathione S-transferase, N-terminal domain JRI60_02300 PF03746 LamB/YcsF family JRI60_02305 PF02626 Carboxyltransferase domain, subdomain A and B JRI60_02320 PF00480 ROK family JRI60_02325 PF13407 Periplasmic binding protein domain JRI60_02340 PF00360 Phytochrome region JRI60_02340 PF00512 His Kinase A (phospho-acceptor) domain JRI60_02340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_02340 PF08446 PAS fold JRI60_02340 PF01590 GAF domain JRI60_02345 PF02779 Transketolase, pyrimidine binding domain JRI60_02345 PF02780 Transketolase, C-terminal domain JRI60_02345 PF00456 Transketolase, thiamine diphosphate binding domain JRI60_02360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_02360 PF00512 His Kinase A (phospho-acceptor) domain JRI60_02390 PF00072 Response regulator receiver domain JRI60_02390 PF00158 Sigma-54 interaction domain JRI60_02390 PF02954 Bacterial regulatory protein, Fis family JRI60_02405 PF00075 RNase H JRI60_02415 PF16884 N-terminal domain of oxidoreductase JRI60_02415 PF00107 Zinc-binding dehydrogenase JRI60_02425 PF00067 Cytochrome P450 JRI60_02425 PF00667 FAD binding domain JRI60_02425 PF00175 Oxidoreductase NAD-binding domain JRI60_02425 PF00258 Flavodoxin JRI60_02430 PF00067 Cytochrome P450 JRI60_02435 PF00264 Common central domain of tyrosinase JRI60_02440 PF00149 Calcineurin-like phosphoesterase JRI60_02440 PF02872 5'-nucleotidase, C-terminal domain JRI60_02460 PF00561 alpha/beta hydrolase fold JRI60_02465 PF17203 Single cache domain 3 JRI60_02465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_02465 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JRI60_02465 PF00989 PAS fold JRI60_02475 PF01327 Polypeptide deformylase JRI60_02490 PF00158 Sigma-54 interaction domain JRI60_02490 PF02954 Bacterial regulatory protein, Fis family JRI60_02490 PF01590 GAF domain JRI60_02495 PF03951 Glutamine synthetase, beta-Grasp domain JRI60_02495 PF00120 Glutamine synthetase, catalytic domain JRI60_02500 PF07995 Glucose / Sorbosone dehydrogenase JRI60_02515 PF18390 Glycogen debranching enzyme C-terminal domain JRI60_02515 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_02515 PF00128 Alpha amylase, catalytic domain JRI60_02550 PF01593 Flavin containing amine oxidoreductase JRI60_02555 PF00106 short chain dehydrogenase JRI60_02560 PF13460 NAD(P)H-binding JRI60_02560 PF11066 Protein of unknown function (DUF2867) JRI60_02565 PF00067 Cytochrome P450 JRI60_02620 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_02620 PF00512 His Kinase A (phospho-acceptor) domain JRI60_02620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_02620 PF00072 Response regulator receiver domain JRI60_02635 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JRI60_02635 PF01266 FAD dependent oxidoreductase JRI60_02640 PF00082 Subtilase family JRI60_02650 PF04542 Sigma-70 region 2 JRI60_02650 PF08281 Sigma-70, region 4 JRI60_02665 PF13286 Phosphohydrolase-associated domain JRI60_02665 PF01966 HD domain JRI60_02675 PF01510 N-acetylmuramoyl-L-alanine amidase JRI60_02685 PF00067 Cytochrome P450 JRI60_02700 PF00202 Aminotransferase class-III JRI60_02725 PF04229 GrpB protein JRI60_02725 PF13673 Acetyltransferase (GNAT) domain JRI60_02730 PF00561 alpha/beta hydrolase fold JRI60_02735 PF00561 alpha/beta hydrolase fold JRI60_02740 PF00440 Bacterial regulatory proteins, tetR family JRI60_02745 PF00144 Beta-lactamase JRI60_02785 PF06505 Activator of aromatic catabolism JRI60_02785 PF02830 V4R domain JRI60_02785 PF00158 Sigma-54 interaction domain JRI60_02785 PF02954 Bacterial regulatory protein, Fis family JRI60_02800 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_02805 PF00067 Cytochrome P450 JRI60_02810 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JRI60_02810 PF00384 Molybdopterin oxidoreductase JRI60_02810 PF01568 Molydopterin dinucleotide binding domain JRI60_02830 PF03193 RsgA GTPase JRI60_02850 PF00144 Beta-lactamase JRI60_02860 PF00106 short chain dehydrogenase JRI60_02885 PF13607 Succinyl-CoA ligase like flavodoxin domain JRI60_02885 PF13380 CoA binding domain JRI60_02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_02890 PF03466 LysR substrate binding domain JRI60_02895 PF03601 Conserved hypothetical protein 698 JRI60_02920 PF01593 Flavin containing amine oxidoreductase JRI60_02935 PF00563 EAL domain JRI60_02935 PF00990 Diguanylate cyclase, GGDEF domain JRI60_02935 PF03707 Bacterial signalling protein N terminal repeat JRI60_02945 PF08281 Sigma-70, region 4 JRI60_02945 PF04542 Sigma-70 region 2 JRI60_02950 PF00072 Response regulator receiver domain JRI60_02955 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_02955 PF13191 AAA ATPase domain JRI60_02975 PF13191 AAA ATPase domain JRI60_02975 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_03010 PF00313 'Cold-shock' DNA-binding domain JRI60_03015 PF10990 Protein of unknown function (DUF2809) JRI60_03045 PF00072 Response regulator receiver domain JRI60_03045 PF00158 Sigma-54 interaction domain JRI60_03050 PF00069 Protein kinase domain JRI60_03060 PF00069 Protein kinase domain JRI60_03060 PF07238 PilZ domain JRI60_03100 PF05368 NmrA-like family JRI60_03105 PF01638 HxlR-like helix-turn-helix JRI60_03120 PF00732 GMC oxidoreductase JRI60_03120 PF05199 GMC oxidoreductase JRI60_03125 PF00512 His Kinase A (phospho-acceptor) domain JRI60_03125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_03125 PF00989 PAS fold JRI60_03155 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_03160 PF00005 ABC transporter JRI60_03165 PF02361 Cobalt transport protein JRI60_03170 PF02632 BioY family JRI60_03175 PF00034 Cytochrome c JRI60_03175 PF03150 Di-haem cytochrome c peroxidase JRI60_03185 PF00072 Response regulator receiver domain JRI60_03185 PF01339 CheB methylesterase JRI60_03205 PF01043 SecA preprotein cross-linking domain JRI60_03205 PF07517 SecA DEAD-like domain JRI60_03205 PF07516 SecA Wing and Scaffold domain JRI60_03205 PF02810 SEC-C motif JRI60_03225 PF02743 Cache domain JRI60_03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_03225 PF00512 His Kinase A (phospho-acceptor) domain JRI60_03230 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_03270 PF12833 Helix-turn-helix domain JRI60_03270 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JRI60_03275 PF00293 NUDIX domain JRI60_03275 PF01467 Cytidylyltransferase-like JRI60_03305 PF00512 His Kinase A (phospho-acceptor) domain JRI60_03305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_03315 PF00690 Cation transporter/ATPase, N-terminus JRI60_03315 PF00689 Cation transporting ATPase, C-terminus JRI60_03320 PF00582 Universal stress protein family JRI60_03325 PF00582 Universal stress protein family JRI60_03330 PF02954 Bacterial regulatory protein, Fis family JRI60_03330 PF00072 Response regulator receiver domain JRI60_03330 PF00158 Sigma-54 interaction domain JRI60_03345 PF13360 PQQ-like domain JRI60_03345 PF00069 Protein kinase domain JRI60_03360 PF04389 Peptidase family M28 JRI60_03375 PF00691 OmpA family JRI60_03375 PF05736 OprF membrane domain JRI60_03430 PF00550 Phosphopantetheine attachment site JRI60_03430 PF14765 Polyketide synthase dehydratase JRI60_03430 PF08659 KR domain JRI60_03430 PF00698 Acyl transferase domain JRI60_03430 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_03430 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_03430 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_03430 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_03435 PF02901 Pyruvate formate lyase-like JRI60_03435 PF01228 Glycine radical JRI60_03440 PF08990 Erythronolide synthase docking JRI60_03440 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_03440 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_03440 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_03440 PF08659 KR domain JRI60_03440 PF00698 Acyl transferase domain JRI60_03440 PF00550 Phosphopantetheine attachment site JRI60_03440 PF00975 Thioesterase domain JRI60_03440 PF18369 Polyketide synthase dimerisation element domain JRI60_03450 PF08659 KR domain JRI60_03450 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_03450 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_03450 PF14765 Polyketide synthase dehydratase JRI60_03450 PF00550 Phosphopantetheine attachment site JRI60_03450 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_03465 PF00501 AMP-binding enzyme JRI60_03475 PF07995 Glucose / Sorbosone dehydrogenase JRI60_03485 PF01112 Asparaginase JRI60_03490 PF09178 Domain of unknown function (DUF1945) JRI60_03490 PF00128 Alpha amylase, catalytic domain JRI60_03495 PF00085 Thioredoxin JRI60_03520 PF00149 Calcineurin-like phosphoesterase JRI60_03525 PF03279 Bacterial lipid A biosynthesis acyltransferase JRI60_03530 PF11838 ERAP1-like C-terminal domain JRI60_03530 PF01433 Peptidase family M1 domain JRI60_03540 PF00378 Enoyl-CoA hydratase/isomerase JRI60_03555 PF14572 Phosphoribosyl synthetase-associated domain JRI60_03555 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JRI60_03565 PF00156 Phosphoribosyl transferase domain JRI60_03565 PF05139 Erythromycin esterase JRI60_03570 PF00156 Phosphoribosyl transferase domain JRI60_03570 PF01738 Dienelactone hydrolase family JRI60_03580 PF00929 Exonuclease JRI60_03585 PF00072 Response regulator receiver domain JRI60_03585 PF00486 Transcriptional regulatory protein, C terminal JRI60_03590 PF06745 KaiC JRI60_03595 PF00501 AMP-binding enzyme JRI60_03595 PF13193 AMP-binding enzyme C-terminal domain JRI60_03610 PF02464 Competence-damaged protein JRI60_03610 PF00994 Probable molybdopterin binding domain JRI60_03645 PF00355 Rieske [2Fe-2S] domain JRI60_03650 PF00072 Response regulator receiver domain JRI60_03650 PF13426 PAS domain JRI60_03650 PF08448 PAS fold JRI60_03650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_03650 PF00512 His Kinase A (phospho-acceptor) domain JRI60_03655 PF00083 Sugar (and other) transporter JRI60_03660 PF00989 PAS fold JRI60_03660 PF00512 His Kinase A (phospho-acceptor) domain JRI60_03660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_03680 PF03435 Saccharopine dehydrogenase NADP binding domain JRI60_03685 PF00388 Phosphatidylinositol-specific phospholipase C, X domain JRI60_03745 PF17149 Periplasmic sensor domain found in signal transduction proteins JRI60_03745 PF00672 HAMP domain JRI60_03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_03745 PF00512 His Kinase A (phospho-acceptor) domain JRI60_03745 PF01627 Hpt domain JRI60_03745 PF00072 Response regulator receiver domain JRI60_03750 PF00072 Response regulator receiver domain JRI60_03750 PF09308 LuxQ, periplasmic JRI60_03750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_03750 PF00512 His Kinase A (phospho-acceptor) domain JRI60_03755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_03755 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JRI60_03760 PF01738 Dienelactone hydrolase family JRI60_03770 PF00491 Arginase family JRI60_03775 PF00069 Protein kinase domain JRI60_03800 PF01739 CheR methyltransferase, SAM binding domain JRI60_03800 PF03705 CheR methyltransferase, all-alpha domain JRI60_03855 PF13426 PAS domain JRI60_03855 PF00072 Response regulator receiver domain JRI60_03855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_03870 PF00892 EamA-like transporter family JRI60_03910 PF00069 Protein kinase domain JRI60_03935 PF00557 Metallopeptidase family M24 JRI60_03940 PF00672 HAMP domain JRI60_03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_03940 PF18698 Histidine kinase sensor domain JRI60_03940 PF00512 His Kinase A (phospho-acceptor) domain JRI60_03940 PF00989 PAS fold JRI60_03945 PF00892 EamA-like transporter family JRI60_03950 PF00155 Aminotransferase class I and II JRI60_03950 PF00392 Bacterial regulatory proteins, gntR family JRI60_03960 PF12706 Beta-lactamase superfamily domain JRI60_04005 PF02463 RecF/RecN/SMC N terminal domain JRI60_04010 PF00360 Phytochrome region JRI60_04010 PF01590 GAF domain JRI60_04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04010 PF00512 His Kinase A (phospho-acceptor) domain JRI60_04010 PF08446 PAS fold JRI60_04015 PF02423 Ornithine cyclodeaminase/mu-crystallin family JRI60_04085 PF07516 SecA Wing and Scaffold domain JRI60_04085 PF01043 SecA preprotein cross-linking domain JRI60_04085 PF07517 SecA DEAD-like domain JRI60_04085 PF02810 SEC-C motif JRI60_04140 PF08359 YsiA-like protein, C-terminal region JRI60_04140 PF00440 Bacterial regulatory proteins, tetR family JRI60_04145 PF00989 PAS fold JRI60_04145 PF00512 His Kinase A (phospho-acceptor) domain JRI60_04145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JRI60_04165 PF00306 ATP synthase alpha/beta chain, C terminal domain JRI60_04165 PF02874 ATP synthase alpha/beta family, beta-barrel domain JRI60_04170 PF00672 HAMP domain JRI60_04170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04170 PF00512 His Kinase A (phospho-acceptor) domain JRI60_04170 PF16750 Sensor domain of 2-component histidine kinase JRI60_04175 PF00213 ATP synthase delta (OSCP) subunit JRI60_04180 PF00012 Hsp70 protein JRI60_04200 PF01554 MatE JRI60_04255 PF00072 Response regulator receiver domain JRI60_04255 PF00486 Transcriptional regulatory protein, C terminal JRI60_04270 PF08446 PAS fold JRI60_04270 PF00360 Phytochrome region JRI60_04270 PF00512 His Kinase A (phospho-acceptor) domain JRI60_04270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04270 PF01590 GAF domain JRI60_04320 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_04320 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_04320 PF17871 AAA lid domain JRI60_04320 PF07724 AAA domain (Cdc48 subfamily) JRI60_04320 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_04325 PF03741 Integral membrane protein TerC family JRI60_04330 PF00326 Prolyl oligopeptidase family JRI60_04335 PF03091 CutA1 divalent ion tolerance protein JRI60_04345 PF00072 Response regulator receiver domain JRI60_04345 PF00486 Transcriptional regulatory protein, C terminal JRI60_04355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04355 PF01627 Hpt domain JRI60_04355 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_04355 PF09078 CheY binding JRI60_04355 PF01584 CheW-like domain JRI60_04360 PF02203 Tar ligand binding domain homologue JRI60_04360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_04360 PF00672 HAMP domain JRI60_04365 PF00672 HAMP domain JRI60_04365 PF16591 Helical bimodular sensor domain JRI60_04365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_04370 PF01584 CheW-like domain JRI60_04375 PF01739 CheR methyltransferase, SAM binding domain JRI60_04375 PF03705 CheR methyltransferase, all-alpha domain JRI60_04390 PF00232 Glycosyl hydrolase family 1 JRI60_04415 PF00989 PAS fold JRI60_04415 PF00512 His Kinase A (phospho-acceptor) domain JRI60_04415 PF18698 Histidine kinase sensor domain JRI60_04415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04415 PF00672 HAMP domain JRI60_04420 PF00072 Response regulator receiver domain JRI60_04420 PF01339 CheB methylesterase JRI60_04425 PF01584 CheW-like domain JRI60_04425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04425 PF01627 Hpt domain JRI60_04425 PF00072 Response regulator receiver domain JRI60_04430 PF02743 Cache domain JRI60_04430 PF00672 HAMP domain JRI60_04430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_04440 PF01739 CheR methyltransferase, SAM binding domain JRI60_04445 PF01584 CheW-like domain JRI60_04450 PF01593 Flavin containing amine oxidoreductase JRI60_04470 PF00067 Cytochrome P450 JRI60_04495 PF00248 Aldo/keto reductase family JRI60_04500 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_04500 PF04389 Peptidase family M28 JRI60_04510 PF00005 ABC transporter JRI60_04515 PF00027 Cyclic nucleotide-binding domain JRI60_04515 PF04960 Glutaminase JRI60_04515 PF01740 STAS domain JRI60_04520 PF00027 Cyclic nucleotide-binding domain JRI60_04520 PF13545 Crp-like helix-turn-helix domain JRI60_04525 PF00905 Penicillin binding protein transpeptidase domain JRI60_04525 PF00912 Transglycosylase JRI60_04525 PF17092 Penicillin-binding protein OB-like domain JRI60_04530 PF09297 NADH pyrophosphatase zinc ribbon domain JRI60_04530 PF00293 NUDIX domain JRI60_04600 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_04625 PF01066 CDP-alcohol phosphatidyltransferase JRI60_04630 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JRI60_04635 PF01432 Peptidase family M3 JRI60_04650 PF00085 Thioredoxin JRI60_04670 PF01594 AI-2E family transporter JRI60_04680 PF02698 DUF218 domain JRI60_04685 PF00486 Transcriptional regulatory protein, C terminal JRI60_04685 PF00072 Response regulator receiver domain JRI60_04690 PF00231 ATP synthase JRI60_04695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JRI60_04695 PF02874 ATP synthase alpha/beta family, beta-barrel domain JRI60_04705 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JRI60_04710 PF01152 Bacterial-like globin JRI60_04715 PF00970 Oxidoreductase FAD-binding domain JRI60_04715 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_04715 PF00175 Oxidoreductase NAD-binding domain JRI60_04720 PF02082 Transcriptional regulator JRI60_04730 PF03747 ADP-ribosylglycohydrolase JRI60_04745 PF01654 Cytochrome bd terminal oxidase subunit I JRI60_04755 PF00501 AMP-binding enzyme JRI60_04760 PF00360 Phytochrome region JRI60_04760 PF08446 PAS fold JRI60_04760 PF00512 His Kinase A (phospho-acceptor) domain JRI60_04760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04760 PF01590 GAF domain JRI60_04765 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_04765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04765 PF00512 His Kinase A (phospho-acceptor) domain JRI60_04765 PF08448 PAS fold JRI60_04765 PF00672 HAMP domain JRI60_04770 PF00326 Prolyl oligopeptidase family JRI60_04770 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JRI60_04775 PF01230 HIT domain JRI60_04785 PF07969 Amidohydrolase family JRI60_04790 PF01551 Peptidase family M23 JRI60_04790 PF08525 Opacity-associated protein A N-terminal motif JRI60_04790 PF01476 LysM domain JRI60_04810 PF00069 Protein kinase domain JRI60_04810 PF03793 PASTA domain JRI60_04815 PF00069 Protein kinase domain JRI60_04815 PF03793 PASTA domain JRI60_04840 PF00069 Protein kinase domain JRI60_04840 PF03793 PASTA domain JRI60_04845 PF13167 GTP-binding GTPase N-terminal JRI60_04845 PF16360 GTP-binding GTPase Middle Region JRI60_04845 PF01926 50S ribosome-binding GTPase JRI60_04875 PF00999 Sodium/hydrogen exchanger family JRI60_04875 PF02254 TrkA-N domain JRI60_04880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04880 PF00989 PAS fold JRI60_04880 PF00512 His Kinase A (phospho-acceptor) domain JRI60_04885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04885 PF00512 His Kinase A (phospho-acceptor) domain JRI60_04890 PF00158 Sigma-54 interaction domain JRI60_04890 PF00072 Response regulator receiver domain JRI60_04890 PF02954 Bacterial regulatory protein, Fis family JRI60_04895 PF01627 Hpt domain JRI60_04895 PF09078 CheY binding JRI60_04895 PF01584 CheW-like domain JRI60_04895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04895 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_04900 PF00672 HAMP domain JRI60_04900 PF02203 Tar ligand binding domain homologue JRI60_04900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_04905 PF01584 CheW-like domain JRI60_04910 PF03705 CheR methyltransferase, all-alpha domain JRI60_04910 PF01739 CheR methyltransferase, SAM binding domain JRI60_04915 PF01339 CheB methylesterase JRI60_04915 PF00072 Response regulator receiver domain JRI60_04935 PF00593 TonB dependent receptor JRI60_04945 PF00512 His Kinase A (phospho-acceptor) domain JRI60_04945 PF00672 HAMP domain JRI60_04945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_04945 PF13426 PAS domain JRI60_04985 PF05736 OprF membrane domain JRI60_04985 PF00691 OmpA family JRI60_05005 PF00069 Protein kinase domain JRI60_05010 PF00072 Response regulator receiver domain JRI60_05010 PF02954 Bacterial regulatory protein, Fis family JRI60_05010 PF00158 Sigma-54 interaction domain JRI60_05045 PF01738 Dienelactone hydrolase family JRI60_05070 PF00512 His Kinase A (phospho-acceptor) domain JRI60_05070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_05075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_05075 PF00989 PAS fold JRI60_05075 PF00512 His Kinase A (phospho-acceptor) domain JRI60_05100 PF13419 Haloacid dehalogenase-like hydrolase JRI60_05110 PF13493 Domain of unknown function (DUF4118) JRI60_05110 PF00989 PAS fold JRI60_05110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_05110 PF08447 PAS fold JRI60_05110 PF13426 PAS domain JRI60_05110 PF00512 His Kinase A (phospho-acceptor) domain JRI60_05125 PF00795 Carbon-nitrogen hydrolase JRI60_05125 PF02540 NAD synthase JRI60_05135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_05140 PF00085 Thioredoxin JRI60_05145 PF13419 Haloacid dehalogenase-like hydrolase JRI60_05150 PF01062 Bestrophin, RFP-TM, chloride channel JRI60_05165 PF00158 Sigma-54 interaction domain JRI60_05165 PF00072 Response regulator receiver domain JRI60_05165 PF02954 Bacterial regulatory protein, Fis family JRI60_05185 PF02261 Aspartate decarboxylase JRI60_05200 PF00005 ABC transporter JRI60_05205 PF12679 ABC-2 family transporter protein JRI60_05225 PF08308 PEGA domain JRI60_05225 PF00069 Protein kinase domain JRI60_05240 PF11838 ERAP1-like C-terminal domain JRI60_05240 PF01433 Peptidase family M1 domain JRI60_05285 PF00043 Glutathione S-transferase, C-terminal domain JRI60_05285 PF02798 Glutathione S-transferase, N-terminal domain JRI60_05290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_05290 PF03466 LysR substrate binding domain JRI60_05295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_05305 PF12833 Helix-turn-helix domain JRI60_05305 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JRI60_05320 PF01872 RibD C-terminal domain JRI60_05345 PF01965 DJ-1/PfpI family JRI60_05350 PF01878 EVE domain JRI60_05355 PF13280 WYL domain JRI60_05355 PF08279 HTH domain JRI60_05365 PF16363 GDP-mannose 4,6 dehydratase JRI60_05375 PF04960 Glutaminase JRI60_05380 PF13817 IS66 C-terminal element JRI60_05380 PF13007 Transposase C of IS166 homeodomain JRI60_05380 PF03050 Transposase IS66 family JRI60_05380 PF13005 zinc-finger binding domain of transposase IS66 JRI60_05405 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_05405 PF14765 Polyketide synthase dehydratase JRI60_05405 PF00550 Phosphopantetheine attachment site JRI60_05405 PF00698 Acyl transferase domain JRI60_05405 PF08659 KR domain JRI60_05405 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_05405 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_05405 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_05415 PF00248 Aldo/keto reductase family JRI60_05420 PF02627 Carboxymuconolactone decarboxylase family JRI60_05430 PF00248 Aldo/keto reductase family JRI60_05435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_05435 PF03466 LysR substrate binding domain JRI60_05450 PF13408 Recombinase zinc beta ribbon domain JRI60_05450 PF00239 Resolvase, N terminal domain JRI60_05450 PF07508 Recombinase JRI60_05480 PF03793 PASTA domain JRI60_05480 PF00069 Protein kinase domain JRI60_05485 PF01965 DJ-1/PfpI family JRI60_05485 PF12833 Helix-turn-helix domain JRI60_05495 PF01266 FAD dependent oxidoreductase JRI60_05505 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_05505 PF14602 Hexapeptide repeat of succinyl-transferase JRI60_05505 PF12804 MobA-like NTP transferase domain JRI60_05550 PF01047 MarR family JRI60_05570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_05575 PF00005 ABC transporter JRI60_05585 PF12704 MacB-like periplasmic core domain JRI60_05585 PF00005 ABC transporter JRI60_05600 PF00535 Glycosyl transferase family 2 JRI60_05610 PF00487 Fatty acid desaturase JRI60_05615 PF00282 Pyridoxal-dependent decarboxylase conserved domain JRI60_05630 PF14602 Hexapeptide repeat of succinyl-transferase JRI60_05630 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JRI60_05630 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_05635 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_05635 PF13191 AAA ATPase domain JRI60_05640 PF07689 KaiB domain JRI60_05640 PF00512 His Kinase A (phospho-acceptor) domain JRI60_05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_05650 PF01546 Peptidase family M20/M25/M40 JRI60_05650 PF07687 Peptidase dimerisation domain JRI60_05660 PF00892 EamA-like transporter family JRI60_05670 PF01329 Pterin 4 alpha carbinolamine dehydratase JRI60_05675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JRI60_05675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JRI60_05685 PF16123 Hydroxyacylglutathione hydrolase C-terminus JRI60_05685 PF00753 Metallo-beta-lactamase superfamily JRI60_05705 PF02687 FtsX-like permease family JRI60_05705 PF12704 MacB-like periplasmic core domain JRI60_05710 PF00005 ABC transporter JRI60_05715 PF00512 His Kinase A (phospho-acceptor) domain JRI60_05715 PF13426 PAS domain JRI60_05715 PF00672 HAMP domain JRI60_05715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_05740 PF01218 Coproporphyrinogen III oxidase JRI60_05755 PF00893 Small Multidrug Resistance protein JRI60_05760 PF08281 Sigma-70, region 4 JRI60_05760 PF04542 Sigma-70 region 2 JRI60_05790 PF02254 TrkA-N domain JRI60_05790 PF00999 Sodium/hydrogen exchanger family JRI60_05795 PF01554 MatE JRI60_05800 PF00512 His Kinase A (phospho-acceptor) domain JRI60_05800 PF13188 PAS domain JRI60_05800 PF00072 Response regulator receiver domain JRI60_05800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_05800 PF08448 PAS fold JRI60_05805 PF07885 Ion channel JRI60_05805 PF00027 Cyclic nucleotide-binding domain JRI60_05810 PF00999 Sodium/hydrogen exchanger family JRI60_05820 PF07995 Glucose / Sorbosone dehydrogenase JRI60_05845 PF02608 ABC transporter substrate-binding protein PnrA-like JRI60_05850 PF00120 Glutamine synthetase, catalytic domain JRI60_05850 PF03951 Glutamine synthetase, beta-Grasp domain JRI60_05865 PF00892 EamA-like transporter family JRI60_05870 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding JRI60_05870 PF01628 HrcA protein C terminal domain JRI60_05880 PF00781 Diacylglycerol kinase catalytic domain JRI60_05885 PF13419 Haloacid dehalogenase-like hydrolase JRI60_05910 PF00072 Response regulator receiver domain JRI60_05910 PF13188 PAS domain JRI60_05910 PF08448 PAS fold JRI60_05910 PF00512 His Kinase A (phospho-acceptor) domain JRI60_05910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_05915 PF00072 Response regulator receiver domain JRI60_05920 PF07690 Major Facilitator Superfamily JRI60_05925 PF06733 DEAD_2 JRI60_05925 PF13307 Helicase C-terminal domain JRI60_05930 PF00437 Type II/IV secretion system protein JRI60_05935 PF00437 Type II/IV secretion system protein JRI60_05945 PF00025 ADP-ribosylation factor family JRI60_05950 PF01627 Hpt domain JRI60_05950 PF00512 His Kinase A (phospho-acceptor) domain JRI60_05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_05950 PF00989 PAS fold JRI60_05950 PF00072 Response regulator receiver domain JRI60_05950 PF18415 Histidine kinase receptor ArcB trans-membrane domain JRI60_05955 PF02769 AIR synthase related protein, C-terminal domain JRI60_05955 PF00586 AIR synthase related protein, N-terminal domain JRI60_05960 PF00672 HAMP domain JRI60_05960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_05960 PF12729 Four helix bundle sensory module for signal transduction JRI60_05965 PF01584 CheW-like domain JRI60_05970 PF00072 Response regulator receiver domain JRI60_05975 PF01627 Hpt domain JRI60_05975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_05975 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_05975 PF01584 CheW-like domain JRI60_05975 PF07194 P2 response regulator binding domain JRI60_05990 PF00128 Alpha amylase, catalytic domain JRI60_05990 PF16657 Maltogenic Amylase, C-terminal domain JRI60_05990 PF02903 Alpha amylase, N-terminal ig-like domain JRI60_05995 PF00005 ABC transporter JRI60_05995 PF17912 MalK OB fold domain JRI60_06000 PF01547 Bacterial extracellular solute-binding protein JRI60_06005 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_06010 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_06030 PF00128 Alpha amylase, catalytic domain JRI60_06035 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_06035 PF03714 Bacterial pullanase-associated domain JRI60_06035 PF18494 Pullulanase Ins domain JRI60_06035 PF11852 Domain of unknown function (DUF3372) JRI60_06035 PF17967 Pullulanase N2 domain JRI60_06040 PF00731 AIR carboxylase JRI60_06045 PF01969 Protein of unknown function DUF111 JRI60_06050 PF00850 Histone deacetylase domain JRI60_06065 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JRI60_06080 PF00005 ABC transporter JRI60_06090 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JRI60_06090 PF13378 Enolase C-terminal domain-like JRI60_06095 PF01494 FAD binding domain JRI60_06110 PF06724 Domain of Unknown Function (DUF1206) JRI60_06130 PF01025 GrpE JRI60_06135 PF00012 Hsp70 protein JRI60_06140 PF00069 Protein kinase domain JRI60_06150 PF13458 Periplasmic binding protein JRI60_06155 PF02653 Branched-chain amino acid transport system / permease component JRI60_06160 PF11862 Domain of unknown function (DUF3382) JRI60_06160 PF02653 Branched-chain amino acid transport system / permease component JRI60_06165 PF12399 Branched-chain amino acid ATP-binding cassette transporter JRI60_06165 PF00005 ABC transporter JRI60_06170 PF00005 ABC transporter JRI60_06180 PF00069 Protein kinase domain JRI60_06180 PF03793 PASTA domain JRI60_06200 PF13649 Methyltransferase domain JRI60_06225 PF13860 FlgD Ig-like domain JRI60_06225 PF05922 Peptidase inhibitor I9 JRI60_06225 PF02225 PA domain JRI60_06225 PF00082 Subtilase family JRI60_06235 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JRI60_06235 PF09180 Prolyl-tRNA synthetase, C-terminal JRI60_06235 PF03129 Anticodon binding domain JRI60_06260 PF00114 Pilin (bacterial filament) JRI60_06260 PF07963 Prokaryotic N-terminal methylation motif JRI60_06290 PF12802 MarR family JRI60_06320 PF02797 Chalcone and stilbene synthases, C-terminal domain JRI60_06320 PF00195 Chalcone and stilbene synthases, N-terminal domain JRI60_06325 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family JRI60_06335 PF00501 AMP-binding enzyme JRI60_06340 PF01494 FAD binding domain JRI60_06365 PF14535 AMP-binding enzyme C-terminal domain JRI60_06365 PF00501 AMP-binding enzyme JRI60_06370 PF00195 Chalcone and stilbene synthases, N-terminal domain JRI60_06370 PF02797 Chalcone and stilbene synthases, C-terminal domain JRI60_06380 PF00672 HAMP domain JRI60_06380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_06385 PF01565 FAD binding domain JRI60_06385 PF04030 D-arabinono-1,4-lactone oxidase JRI60_06400 PF00486 Transcriptional regulatory protein, C terminal JRI60_06400 PF00072 Response regulator receiver domain JRI60_06415 PF00578 AhpC/TSA family JRI60_06435 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_06435 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_06450 PF01494 FAD binding domain JRI60_06455 PF00067 Cytochrome P450 JRI60_06515 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_06515 PF17863 AAA lid domain JRI60_06525 PF00012 Hsp70 protein JRI60_06530 PF02254 TrkA-N domain JRI60_06530 PF00999 Sodium/hydrogen exchanger family JRI60_06555 PF16363 GDP-mannose 4,6 dehydratase JRI60_06565 PF16363 GDP-mannose 4,6 dehydratase JRI60_06590 PF01047 MarR family JRI60_06600 PF00005 ABC transporter JRI60_06600 PF03459 TOBE domain JRI60_06605 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_06610 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_06620 PF00934 PE family JRI60_06620 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_06630 PF00069 Protein kinase domain JRI60_06630 PF08308 PEGA domain JRI60_06635 PF10531 SLBB domain JRI60_06665 PF01032 FecCD transport family JRI60_06705 PF00355 Rieske [2Fe-2S] domain JRI60_06715 PF00069 Protein kinase domain JRI60_06720 PF00005 ABC transporter JRI60_06735 PF01230 HIT domain JRI60_06745 PF07475 HPr Serine kinase C-terminal domain JRI60_06745 PF02603 HPr Serine kinase N terminus JRI60_06750 PF03668 P-loop ATPase protein family JRI60_06755 PF03610 PTS system fructose IIA component JRI60_06755 PF03830 PTS system sorbose subfamily IIB component JRI60_06760 PF03830 PTS system sorbose subfamily IIB component JRI60_06770 PF03613 PTS system mannose/fructose/sorbose family IID component JRI60_06775 PF00381 PTS HPr component phosphorylation site JRI60_06780 PF00391 PEP-utilising enzyme, mobile domain JRI60_06780 PF02896 PEP-utilising enzyme, TIM barrel domain JRI60_06780 PF05524 PEP-utilising enzyme, N-terminal JRI60_06785 PF02308 MgtC family JRI60_06795 PF01384 Phosphate transporter family JRI60_06805 PF00282 Pyridoxal-dependent decarboxylase conserved domain JRI60_06810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JRI60_06810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JRI60_06815 PF01774 UreD urease accessory protein JRI60_06820 PF00547 Urease, gamma subunit JRI60_06820 PF00699 Urease beta subunit JRI60_06825 PF00449 Urease alpha-subunit, N-terminal domain JRI60_06825 PF01979 Amidohydrolase family JRI60_06830 PF01730 UreF JRI60_06835 PF02492 CobW/HypB/UreG, nucleotide-binding domain JRI60_06855 PF02772 S-adenosylmethionine synthetase, central domain JRI60_06855 PF00438 S-adenosylmethionine synthetase, N-terminal domain JRI60_06855 PF02773 S-adenosylmethionine synthetase, C-terminal domain JRI60_06860 PF01979 Amidohydrolase family JRI60_06870 PF01425 Amidase JRI60_06885 PF00501 AMP-binding enzyme JRI60_06905 PF04264 YceI-like domain JRI60_06910 PF02773 S-adenosylmethionine synthetase, C-terminal domain JRI60_06910 PF00438 S-adenosylmethionine synthetase, N-terminal domain JRI60_06910 PF02772 S-adenosylmethionine synthetase, central domain JRI60_06915 PF05221 S-adenosyl-L-homocysteine hydrolase JRI60_06915 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JRI60_06925 PF00593 TonB dependent receptor JRI60_06970 PF13180 PDZ domain JRI60_06975 PF02810 SEC-C motif JRI60_06980 PF02673 Bacitracin resistance protein BacA JRI60_06990 PF00072 Response regulator receiver domain JRI60_06990 PF02954 Bacterial regulatory protein, Fis family JRI60_06990 PF00158 Sigma-54 interaction domain JRI60_06995 PF00512 His Kinase A (phospho-acceptor) domain JRI60_06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_07010 PF03062 MBOAT, membrane-bound O-acyltransferase family JRI60_07020 PF01050 Mannose-6-phosphate isomerase JRI60_07020 PF00483 Nucleotidyl transferase JRI60_07025 PF07238 PilZ domain JRI60_07025 PF00069 Protein kinase domain JRI60_07045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JRI60_07045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JRI60_07045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JRI60_07045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JRI60_07050 PF03358 NADPH-dependent FMN reductase JRI60_07055 PF00480 ROK family JRI60_07060 PF02608 ABC transporter substrate-binding protein PnrA-like JRI60_07065 PF04972 BON domain JRI60_07065 PF00691 OmpA family JRI60_07075 PF00072 Response regulator receiver domain JRI60_07075 PF00512 His Kinase A (phospho-acceptor) domain JRI60_07075 PF00672 HAMP domain JRI60_07075 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_07075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_07075 PF01627 Hpt domain JRI60_07080 PF08446 PAS fold JRI60_07080 PF00512 His Kinase A (phospho-acceptor) domain JRI60_07080 PF00360 Phytochrome region JRI60_07080 PF01590 GAF domain JRI60_07080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_07090 PF00067 Cytochrome P450 JRI60_07130 PF00248 Aldo/keto reductase family JRI60_07145 PF02472 Biopolymer transport protein ExbD/TolR JRI60_07150 PF01618 MotA/TolQ/ExbB proton channel family JRI60_07155 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_07155 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_07155 PF03413 Peptidase propeptide and YPEB domain JRI60_07155 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_07170 PF03793 PASTA domain JRI60_07170 PF00069 Protein kinase domain JRI60_07185 PF04389 Peptidase family M28 JRI60_07185 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_07195 PF07715 TonB-dependent Receptor Plug Domain JRI60_07195 PF00593 TonB dependent receptor JRI60_07215 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_07215 PF17863 AAA lid domain JRI60_07225 PF00005 ABC transporter JRI60_07235 PF01882 Protein of unknown function DUF58 JRI60_07250 PF13193 AMP-binding enzyme C-terminal domain JRI60_07250 PF00550 Phosphopantetheine attachment site JRI60_07250 PF00501 AMP-binding enzyme JRI60_07250 PF00668 Condensation domain JRI60_07260 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_07260 PF00069 Protein kinase domain JRI60_07265 PF02954 Bacterial regulatory protein, Fis family JRI60_07265 PF02830 V4R domain JRI60_07265 PF00158 Sigma-54 interaction domain JRI60_07265 PF06505 Activator of aromatic catabolism JRI60_07305 PF00067 Cytochrome P450 JRI60_07310 PF00072 Response regulator receiver domain JRI60_07310 PF02954 Bacterial regulatory protein, Fis family JRI60_07310 PF00158 Sigma-54 interaction domain JRI60_07315 PF00072 Response regulator receiver domain JRI60_07315 PF13188 PAS domain JRI60_07315 PF00512 His Kinase A (phospho-acceptor) domain JRI60_07315 PF08448 PAS fold JRI60_07315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_07320 PF00072 Response regulator receiver domain JRI60_07320 PF00486 Transcriptional regulatory protein, C terminal JRI60_07335 PF01925 Sulfite exporter TauE/SafE JRI60_07365 PF02446 4-alpha-glucanotransferase JRI60_07370 PF02245 Methylpurine-DNA glycosylase (MPG) JRI60_07375 PF08281 Sigma-70, region 4 JRI60_07375 PF04542 Sigma-70 region 2 JRI60_07385 PF04055 Radical SAM superfamily JRI60_07405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_07405 PF08447 PAS fold JRI60_07405 PF13426 PAS domain JRI60_07435 PF03167 Uracil DNA glycosylase superfamily JRI60_07440 PF00355 Rieske [2Fe-2S] domain JRI60_07440 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JRI60_07455 PF00919 Uncharacterized protein family UPF0004 JRI60_07455 PF04055 Radical SAM superfamily JRI60_07465 PF07690 Major Facilitator Superfamily JRI60_07475 PF03070 TENA/THI-4/PQQC family JRI60_07485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_07505 PF00501 AMP-binding enzyme JRI60_07515 PF00149 Calcineurin-like phosphoesterase JRI60_07520 PF13514 AAA domain JRI60_07525 PF00463 Isocitrate lyase family JRI60_07530 PF01274 Malate synthase JRI60_07550 PF10415 Fumarase C C-terminus JRI60_07550 PF00206 Lyase JRI60_07555 PF01168 Alanine racemase, N-terminal domain JRI60_07555 PF14031 Putative serine dehydratase domain JRI60_07575 PF00574 Clp protease JRI60_07585 PF00561 alpha/beta hydrolase fold JRI60_07590 PF02872 5'-nucleotidase, C-terminal domain JRI60_07590 PF17936 Bacterial Ig domain JRI60_07590 PF00149 Calcineurin-like phosphoesterase JRI60_07620 PF00501 AMP-binding enzyme JRI60_07640 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_07650 PF03747 ADP-ribosylglycohydrolase JRI60_07665 PF13396 Phospholipase_D-nuclease N-terminal JRI60_07665 PF13091 PLD-like domain JRI60_07670 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_07670 PF10576 Iron-sulfur binding domain of endonuclease III JRI60_07670 PF00633 Helix-hairpin-helix motif JRI60_07720 PF00583 Acetyltransferase (GNAT) family JRI60_07725 PF01118 Semialdehyde dehydrogenase, NAD binding domain JRI60_07725 PF02774 Semialdehyde dehydrogenase, dimerisation domain JRI60_07730 PF00696 Amino acid kinase family JRI60_07745 PF02743 Cache domain JRI60_07745 PF00512 His Kinase A (phospho-acceptor) domain JRI60_07745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_07760 PF00069 Protein kinase domain JRI60_07760 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_07765 PF01757 Acyltransferase family JRI60_07795 PF06508 Queuosine biosynthesis protein QueC JRI60_07810 PF01263 Aldose 1-epimerase JRI60_07815 PF02625 XdhC and CoxI family JRI60_07815 PF13478 XdhC Rossmann domain JRI60_07820 PF00365 Phosphofructokinase JRI60_07825 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JRI60_07880 PF02705 K+ potassium transporter JRI60_07895 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JRI60_07900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_07900 PF03466 LysR substrate binding domain JRI60_07905 PF07690 Major Facilitator Superfamily JRI60_07935 PF01804 Penicillin amidase JRI60_07940 PF00391 PEP-utilising enzyme, mobile domain JRI60_07940 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JRI60_08080 PF00069 Protein kinase domain JRI60_08085 PF00722 Glycosyl hydrolases family 16 JRI60_08090 PF03466 LysR substrate binding domain JRI60_08090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_08115 PF03932 CutC family JRI60_08125 PF00067 Cytochrome P450 JRI60_08135 PF01464 Transglycosylase SLT domain JRI60_08140 PF08361 MAATS-type transcriptional repressor, C-terminal region JRI60_08140 PF00440 Bacterial regulatory proteins, tetR family JRI60_08150 PF01790 Prolipoprotein diacylglyceryl transferase JRI60_08165 PF00793 DAHP synthetase I family JRI60_08200 PF10604 Polyketide cyclase / dehydrase and lipid transport JRI60_08270 PF02913 FAD linked oxidases, C-terminal domain JRI60_08270 PF01565 FAD binding domain JRI60_08280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JRI60_08280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JRI60_08310 PF00326 Prolyl oligopeptidase family JRI60_08320 PF01476 LysM domain JRI60_08320 PF05257 CHAP domain JRI60_08335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_08335 PF00512 His Kinase A (phospho-acceptor) domain JRI60_08375 PF00083 Sugar (and other) transporter JRI60_08390 PF12704 MacB-like periplasmic core domain JRI60_08390 PF02687 FtsX-like permease family JRI60_08390 PF00005 ABC transporter JRI60_08395 PF12704 MacB-like periplasmic core domain JRI60_08395 PF02687 FtsX-like permease family JRI60_08395 PF00005 ABC transporter JRI60_08400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_08405 PF00672 HAMP domain JRI60_08405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_08405 PF00512 His Kinase A (phospho-acceptor) domain JRI60_08405 PF16750 Sensor domain of 2-component histidine kinase JRI60_08410 PF00486 Transcriptional regulatory protein, C terminal JRI60_08410 PF00072 Response regulator receiver domain JRI60_08430 PF02223 Thymidylate kinase JRI60_08450 PF00672 HAMP domain JRI60_08450 PF00512 His Kinase A (phospho-acceptor) domain JRI60_08450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_08455 PF00486 Transcriptional regulatory protein, C terminal JRI60_08455 PF00072 Response regulator receiver domain JRI60_08485 PF02798 Glutathione S-transferase, N-terminal domain JRI60_08485 PF14497 Glutathione S-transferase, C-terminal domain JRI60_08490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_08510 PF01571 Aminomethyltransferase folate-binding domain JRI60_08510 PF08669 Glycine cleavage T-protein C-terminal barrel domain JRI60_08520 PF13462 Thioredoxin JRI60_08525 PF01253 Translation initiation factor SUI1 JRI60_08540 PF00180 Isocitrate/isopropylmalate dehydrogenase JRI60_08540 PF18324 Hypothetical protein TT1725 JRI60_08550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_08550 PF08447 PAS fold JRI60_08550 PF08448 PAS fold JRI60_08560 PF03466 LysR substrate binding domain JRI60_08560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_08565 PF14765 Polyketide synthase dehydratase JRI60_08565 PF08659 KR domain JRI60_08565 PF00550 Phosphopantetheine attachment site JRI60_08565 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_08565 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_08565 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_08565 PF00698 Acyl transferase domain JRI60_08565 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_08570 PF13419 Haloacid dehalogenase-like hydrolase JRI60_08600 PF01979 Amidohydrolase family JRI60_08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_08620 PF03466 LysR substrate binding domain JRI60_08635 PF00107 Zinc-binding dehydrogenase JRI60_08635 PF13823 Alcohol dehydrogenase GroES-associated JRI60_08635 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_08655 PF02547 Queuosine biosynthesis protein JRI60_08660 PF13439 Glycosyltransferase Family 4 JRI60_08660 PF00534 Glycosyl transferases group 1 JRI60_08670 PF13580 SIS domain JRI60_08700 PF02541 Ppx/GppA phosphatase family JRI60_08705 PF02503 Polyphosphate kinase middle domain JRI60_08705 PF13090 Polyphosphate kinase C-terminal domain 2 JRI60_08705 PF17941 Polyphosphate kinase C-terminal domain 1 JRI60_08705 PF13089 Polyphosphate kinase N-terminal domain JRI60_08720 PF00512 His Kinase A (phospho-acceptor) domain JRI60_08720 PF18698 Histidine kinase sensor domain JRI60_08720 PF00672 HAMP domain JRI60_08720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_08730 PF00072 Response regulator receiver domain JRI60_08735 PF13091 PLD-like domain JRI60_08745 PF03793 PASTA domain JRI60_08745 PF00069 Protein kinase domain JRI60_08755 PF14489 QueF-like protein JRI60_08760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_08760 PF00512 His Kinase A (phospho-acceptor) domain JRI60_08770 PF00310 Glutamine amidotransferases class-II JRI60_08770 PF04898 Glutamate synthase central domain JRI60_08770 PF01645 Conserved region in glutamate synthase JRI60_08770 PF01493 GXGXG motif JRI60_08775 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JRI60_08775 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_08780 PF01872 RibD C-terminal domain JRI60_08780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JRI60_08795 PF00271 Helicase conserved C-terminal domain JRI60_08795 PF00176 SNF2 family N-terminal domain JRI60_08795 PF12419 SNF2 Helicase protein JRI60_08805 PF04794 YdjC-like protein JRI60_08810 PF00069 Protein kinase domain JRI60_08825 PF01979 Amidohydrolase family JRI60_08830 PF00578 AhpC/TSA family JRI60_08835 PF00311 Phosphoenolpyruvate carboxylase JRI60_08855 PF01431 Peptidase family M13 JRI60_08855 PF05649 Peptidase family M13 JRI60_08875 PF00158 Sigma-54 interaction domain JRI60_08875 PF00072 Response regulator receiver domain JRI60_08875 PF02954 Bacterial regulatory protein, Fis family JRI60_08880 PF00535 Glycosyl transferase family 2 JRI60_08905 PF00654 Voltage gated chloride channel JRI60_08915 PF04542 Sigma-70 region 2 JRI60_08915 PF04545 Sigma-70, region 4 JRI60_08930 PF01207 Dihydrouridine synthase (Dus) JRI60_08935 PF00232 Glycosyl hydrolase family 1 JRI60_08945 PF05670 NFACT protein RNA binding domain JRI60_08960 PF02887 Pyruvate kinase, alpha/beta domain JRI60_08960 PF00391 PEP-utilising enzyme, mobile domain JRI60_08960 PF00224 Pyruvate kinase, barrel domain JRI60_08970 PF00834 Ribulose-phosphate 3 epimerase family JRI60_08975 PF00072 Response regulator receiver domain JRI60_08985 PF00069 Protein kinase domain JRI60_08985 PF03793 PASTA domain JRI60_09065 PF00589 Phage integrase family JRI60_09065 PF14659 Phage integrase, N-terminal SAM-like domain JRI60_09100 PF13007 Transposase C of IS166 homeodomain JRI60_09100 PF13005 zinc-finger binding domain of transposase IS66 JRI60_09100 PF03050 Transposase IS66 family JRI60_09100 PF13817 IS66 C-terminal element JRI60_09130 PF00069 Protein kinase domain JRI60_09150 PF07714 Protein tyrosine kinase JRI60_09180 PF03793 PASTA domain JRI60_09180 PF00069 Protein kinase domain JRI60_09195 PF00106 short chain dehydrogenase JRI60_09205 PF04264 YceI-like domain JRI60_09210 PF05726 Pirin C-terminal cupin domain JRI60_09210 PF02678 Pirin JRI60_09220 PF02630 SCO1/SenC JRI60_09235 PF07969 Amidohydrolase family JRI60_09240 PF00158 Sigma-54 interaction domain JRI60_09240 PF02830 V4R domain JRI60_09240 PF06505 Activator of aromatic catabolism JRI60_09240 PF02954 Bacterial regulatory protein, Fis family JRI60_09250 PF07690 Major Facilitator Superfamily JRI60_09270 PF01842 ACT domain JRI60_09270 PF00800 Prephenate dehydratase JRI60_09270 PF01817 Chorismate mutase type II JRI60_09275 PF17885 Styrene monooxygenase A putative substrate binding domain JRI60_09310 PF00149 Calcineurin-like phosphoesterase JRI60_09315 PF13538 UvrD-like helicase C-terminal domain JRI60_09320 PF03621 MbtH-like protein JRI60_09330 PF01381 Helix-turn-helix JRI60_09375 PF00510 Cytochrome c oxidase subunit III JRI60_09380 PF00115 Cytochrome C and Quinol oxidase polypeptide I JRI60_09385 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JRI60_09420 PF00037 4Fe-4S binding domain JRI60_09420 PF13247 4Fe-4S dicluster domain JRI60_09440 PF03449 Transcription elongation factor, N-terminal JRI60_09440 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_09450 PF01965 DJ-1/PfpI family JRI60_09455 PF00756 Putative esterase JRI60_09465 PF00425 chorismate binding enzyme JRI60_09465 PF04715 Anthranilate synthase component I, N terminal region JRI60_09470 PF00117 Glutamine amidotransferase class-I JRI60_09480 PF03060 Nitronate monooxygenase JRI60_09510 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_09515 PF00069 Protein kinase domain JRI60_09530 PF00069 Protein kinase domain JRI60_09530 PF03793 PASTA domain JRI60_09545 PF04738 Lantibiotic dehydratase, N terminus JRI60_09545 PF14028 Lantibiotic biosynthesis dehydratase C-term JRI60_09555 PF04055 Radical SAM superfamily JRI60_09555 PF13186 Iron-sulfur cluster-binding domain JRI60_09565 PF00290 Tryptophan synthase alpha chain JRI60_09570 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_09575 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JRI60_09580 PF00218 Indole-3-glycerol phosphate synthase JRI60_09585 PF02885 Glycosyl transferase family, helical bundle domain JRI60_09585 PF00591 Glycosyl transferase family, a/b domain JRI60_09595 PF01593 Flavin containing amine oxidoreductase JRI60_09610 PF00487 Fatty acid desaturase JRI60_09615 PF00174 Oxidoreductase molybdopterin binding domain JRI60_09620 PF01794 Ferric reductase like transmembrane component JRI60_09625 PF00067 Cytochrome P450 JRI60_09640 PF00593 TonB dependent receptor JRI60_09640 PF07715 TonB-dependent Receptor Plug Domain JRI60_09645 PF00069 Protein kinase domain JRI60_09665 PF01497 Periplasmic binding protein JRI60_09670 PF00072 Response regulator receiver domain JRI60_09670 PF00486 Transcriptional regulatory protein, C terminal JRI60_09700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_09700 PF00672 HAMP domain JRI60_09710 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JRI60_09710 PF00326 Prolyl oligopeptidase family JRI60_09715 PF00313 'Cold-shock' DNA-binding domain JRI60_09720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JRI60_09720 PF02817 e3 binding domain JRI60_09720 PF00364 Biotin-requiring enzyme JRI60_09725 PF16078 2-oxoglutarate dehydrogenase N-terminus JRI60_09725 PF00676 Dehydrogenase E1 component JRI60_09725 PF16870 2-oxoglutarate dehydrogenase C-terminal JRI60_09725 PF02779 Transketolase, pyrimidine binding domain JRI60_09735 PF00072 Response regulator receiver domain JRI60_09735 PF00196 Bacterial regulatory proteins, luxR family JRI60_09740 PF00072 Response regulator receiver domain JRI60_09745 PF03705 CheR methyltransferase, all-alpha domain JRI60_09745 PF01739 CheR methyltransferase, SAM binding domain JRI60_09755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_09755 PF01627 Hpt domain JRI60_09755 PF00072 Response regulator receiver domain JRI60_09755 PF01584 CheW-like domain JRI60_09760 PF00072 Response regulator receiver domain JRI60_09760 PF01339 CheB methylesterase JRI60_09765 PF00672 HAMP domain JRI60_09765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_09770 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_09770 PF07724 AAA domain (Cdc48 subfamily) JRI60_09770 PF17871 AAA lid domain JRI60_09770 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_09770 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_09775 PF02617 ATP-dependent Clp protease adaptor protein ClpS JRI60_09795 PF01106 NifU-like domain JRI60_09810 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_09810 PF00069 Protein kinase domain JRI60_09830 PF02926 THUMP domain JRI60_09830 PF01170 Putative RNA methylase family UPF0020 JRI60_09835 PF00512 His Kinase A (phospho-acceptor) domain JRI60_09835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_09845 PF00196 Bacterial regulatory proteins, luxR family JRI60_09845 PF00072 Response regulator receiver domain JRI60_09850 PF01546 Peptidase family M20/M25/M40 JRI60_09850 PF07687 Peptidase dimerisation domain JRI60_09855 PF07690 Major Facilitator Superfamily JRI60_09860 PF00512 His Kinase A (phospho-acceptor) domain JRI60_09860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_09900 PF00069 Protein kinase domain JRI60_09900 PF03793 PASTA domain JRI60_09910 PF00005 ABC transporter JRI60_09925 PF00668 Condensation domain JRI60_09925 PF00550 Phosphopantetheine attachment site JRI60_09925 PF13193 AMP-binding enzyme C-terminal domain JRI60_09925 PF00501 AMP-binding enzyme JRI60_09930 PF00668 Condensation domain JRI60_09930 PF00550 Phosphopantetheine attachment site JRI60_09930 PF00668 Condensation domain JRI60_09930 PF13193 AMP-binding enzyme C-terminal domain JRI60_09930 PF00501 AMP-binding enzyme JRI60_09930 PF00550 Phosphopantetheine attachment site JRI60_09930 PF13193 AMP-binding enzyme C-terminal domain JRI60_09930 PF00501 AMP-binding enzyme JRI60_09940 PF00009 Elongation factor Tu GTP binding domain JRI60_09940 PF03144 Elongation factor Tu domain 2 JRI60_09940 PF16658 Class II release factor RF3, C-terminal domain JRI60_09965 PF00391 PEP-utilising enzyme, mobile domain JRI60_09965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JRI60_09970 PF00069 Protein kinase domain JRI60_09970 PF03793 PASTA domain JRI60_09990 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JRI60_10015 PF01171 PP-loop family JRI60_10045 PF00069 Protein kinase domain JRI60_10055 PF00561 alpha/beta hydrolase fold JRI60_10055 PF00364 Biotin-requiring enzyme JRI60_10065 PF00248 Aldo/keto reductase family JRI60_10090 PF00082 Subtilase family JRI60_10090 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_10100 PF00069 Protein kinase domain JRI60_10100 PF03793 PASTA domain JRI60_10110 PF01638 HxlR-like helix-turn-helix JRI60_10115 PF00107 Zinc-binding dehydrogenase JRI60_10115 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_10120 PF00378 Enoyl-CoA hydratase/isomerase JRI60_10120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_10120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_10185 PF00069 Protein kinase domain JRI60_10205 PF00023 Ankyrin repeat JRI60_10230 PF07075 Protein of unknown function (DUF1343) JRI60_10240 PF02522 Aminoglycoside 3-N-acetyltransferase JRI60_10245 PF00704 Glycosyl hydrolases family 18 JRI60_10245 PF00041 Fibronectin type III domain JRI60_10245 PF00553 Cellulose binding domain JRI60_10255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_10255 PF05698 Bacterial trigger factor protein (TF) C-terminus JRI60_10255 PF05697 Bacterial trigger factor protein (TF) JRI60_10270 PF14492 Elongation Factor G, domain II JRI60_10270 PF03144 Elongation factor Tu domain 2 JRI60_10270 PF00679 Elongation factor G C-terminus JRI60_10270 PF00009 Elongation factor Tu GTP binding domain JRI60_10270 PF03764 Elongation factor G, domain IV JRI60_10300 PF04542 Sigma-70 region 2 JRI60_10300 PF08281 Sigma-70, region 4 JRI60_10320 PF02463 RecF/RecN/SMC N terminal domain JRI60_10320 PF06470 SMC proteins Flexible Hinge Domain JRI60_10325 PF03976 Polyphosphate kinase 2 (PPK2) JRI60_10330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_10330 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JRI60_10365 PF05114 Protein of unknown function (DUF692) JRI60_10380 PF03065 Glycosyl hydrolase family 57 JRI60_10380 PF00041 Fibronectin type III domain JRI60_10380 PF03423 Carbohydrate binding domain (family 25) JRI60_10390 PF03190 Protein of unknown function, DUF255 JRI60_10415 PF01966 HD domain JRI60_10420 PF00753 Metallo-beta-lactamase superfamily JRI60_10420 PF16123 Hydroxyacylglutathione hydrolase C-terminus JRI60_10425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_10425 PF00512 His Kinase A (phospho-acceptor) domain JRI60_10425 PF16750 Sensor domain of 2-component histidine kinase JRI60_10425 PF00672 HAMP domain JRI60_10430 PF02954 Bacterial regulatory protein, Fis family JRI60_10430 PF00072 Response regulator receiver domain JRI60_10430 PF00158 Sigma-54 interaction domain JRI60_10440 PF00484 Carbonic anhydrase JRI60_10450 PF00186 Dihydrofolate reductase JRI60_10455 PF00303 Thymidylate synthase JRI60_10470 PF01923 Cobalamin adenosyltransferase JRI60_10475 PF08331 Domain of unknown function (DUF1730) JRI60_10485 PF00892 EamA-like transporter family JRI60_10495 PF03631 Virulence factor BrkB JRI60_10500 PF01435 Peptidase family M48 JRI60_10505 PF02735 Ku70/Ku80 beta-barrel domain JRI60_10510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JRI60_10510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JRI60_10525 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JRI60_10525 PF06827 Zinc finger found in FPG and IleRS JRI60_10525 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JRI60_10540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JRI60_10540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JRI60_10545 PF00701 Dihydrodipicolinate synthetase family JRI60_10550 PF01113 Dihydrodipicolinate reductase, N-terminus JRI60_10550 PF05173 Dihydrodipicolinate reductase, C-terminus JRI60_10555 PF01557 Fumarylacetoacetate (FAA) hydrolase family JRI60_10560 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JRI60_10570 PF00571 CBS domain JRI60_10570 PF01380 SIS domain JRI60_10575 PF00923 Transaldolase/Fructose-6-phosphate aldolase JRI60_10585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_10585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_10585 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_10590 PF01012 Electron transfer flavoprotein domain JRI60_10595 PF00766 Electron transfer flavoprotein FAD-binding domain JRI60_10595 PF01012 Electron transfer flavoprotein domain JRI60_10605 PF05402 Coenzyme PQQ synthesis protein D (PqqD) JRI60_10650 PF01479 S4 domain JRI60_10650 PF00849 RNA pseudouridylate synthase JRI60_10655 PF00905 Penicillin binding protein transpeptidase domain JRI60_10655 PF17092 Penicillin-binding protein OB-like domain JRI60_10655 PF00912 Transglycosylase JRI60_10660 PF00106 short chain dehydrogenase JRI60_10675 PF00043 Glutathione S-transferase, C-terminal domain JRI60_10675 PF02798 Glutathione S-transferase, N-terminal domain JRI60_10685 PF00850 Histone deacetylase domain JRI60_10690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_10690 PF08447 PAS fold JRI60_10690 PF13426 PAS domain JRI60_10700 PF02416 mttA/Hcf106 family JRI60_10705 PF00902 Sec-independent protein translocase protein (TatC) JRI60_10705 PF00902 Sec-independent protein translocase protein (TatC) JRI60_10720 PF00561 alpha/beta hydrolase fold JRI60_10725 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_10730 PF02397 Bacterial sugar transferase JRI60_10735 PF01048 Phosphorylase superfamily JRI60_10740 PF00171 Aldehyde dehydrogenase family JRI60_10745 PF00248 Aldo/keto reductase family JRI60_10750 PF00072 Response regulator receiver domain JRI60_10755 PF00085 Thioredoxin JRI60_10770 PF00501 AMP-binding enzyme JRI60_10770 PF13193 AMP-binding enzyme C-terminal domain JRI60_10770 PF00668 Condensation domain JRI60_10770 PF00550 Phosphopantetheine attachment site JRI60_10770 PF07993 Male sterility protein JRI60_10775 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_10775 PF00069 Protein kinase domain JRI60_10780 PF03793 PASTA domain JRI60_10780 PF00069 Protein kinase domain JRI60_10795 PF00108 Thiolase, N-terminal domain JRI60_10795 PF02803 Thiolase, C-terminal domain JRI60_10815 PF02954 Bacterial regulatory protein, Fis family JRI60_10815 PF00158 Sigma-54 interaction domain JRI60_10815 PF02830 V4R domain JRI60_10815 PF06505 Activator of aromatic catabolism JRI60_10820 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JRI60_10825 PF04264 YceI-like domain JRI60_10840 PF13291 ACT domain JRI60_10840 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_10845 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JRI60_10845 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JRI60_10850 PF01381 Helix-turn-helix JRI60_10855 PF00271 Helicase conserved C-terminal domain JRI60_10855 PF00270 DEAD/DEAH box helicase JRI60_10860 PF04545 Sigma-70, region 4 JRI60_10860 PF00140 Sigma-70 factor, region 1.2 JRI60_10860 PF04542 Sigma-70 region 2 JRI60_10860 PF04539 Sigma-70 region 3 JRI60_10930 PF13302 Acetyltransferase (GNAT) domain JRI60_10935 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_10935 PF17862 AAA+ lid domain JRI60_10935 PF01434 Peptidase family M41 JRI60_10950 PF02798 Glutathione S-transferase, N-terminal domain JRI60_10970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_10970 PF03466 LysR substrate binding domain JRI60_10985 PF02983 Alpha-lytic protease prodomain JRI60_10985 PF00652 Ricin-type beta-trefoil lectin domain JRI60_11010 PF00176 SNF2 family N-terminal domain JRI60_11010 PF12419 SNF2 Helicase protein JRI60_11010 PF00271 Helicase conserved C-terminal domain JRI60_11015 PF01510 N-acetylmuramoyl-L-alanine amidase JRI60_11015 PF01476 LysM domain JRI60_11015 PF01471 Putative peptidoglycan binding domain JRI60_11035 PF03793 PASTA domain JRI60_11035 PF00069 Protein kinase domain JRI60_11045 PF00163 Ribosomal protein S4/S9 N-terminal domain JRI60_11045 PF01479 S4 domain JRI60_11050 PF16363 GDP-mannose 4,6 dehydratase JRI60_11055 PF03466 LysR substrate binding domain JRI60_11055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_11060 PF00326 Prolyl oligopeptidase family JRI60_11060 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JRI60_11075 PF00982 Glycosyltransferase family 20 JRI60_11110 PF13537 Glutamine amidotransferase domain JRI60_11110 PF00733 Asparagine synthase JRI60_11115 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_11115 PF00107 Zinc-binding dehydrogenase JRI60_11150 PF00561 alpha/beta hydrolase fold JRI60_11155 PF00892 EamA-like transporter family JRI60_11175 PF07238 PilZ domain JRI60_11175 PF00069 Protein kinase domain JRI60_11200 PF00285 Citrate synthase, C-terminal domain JRI60_11210 PF00080 Copper/zinc superoxide dismutase (SODC) JRI60_11225 PF00183 Hsp90 protein JRI60_11225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_11230 PF17668 Acetyltransferase (GNAT) domain JRI60_11230 PF13530 Sterol carrier protein domain JRI60_11235 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_11235 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_11255 PF04116 Fatty acid hydroxylase superfamily JRI60_11260 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_11260 PF00072 Response regulator receiver domain JRI60_11260 PF01627 Hpt domain JRI60_11260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_11260 PF00672 HAMP domain JRI60_11260 PF00512 His Kinase A (phospho-acceptor) domain JRI60_11265 PF01042 Endoribonuclease L-PSP JRI60_11270 PF00474 Sodium:solute symporter family JRI60_11280 PF13520 Amino acid permease JRI60_11295 PF00067 Cytochrome P450 JRI60_11300 PF00158 Sigma-54 interaction domain JRI60_11300 PF00072 Response regulator receiver domain JRI60_11300 PF02954 Bacterial regulatory protein, Fis family JRI60_11305 PF00106 short chain dehydrogenase JRI60_11315 PF00733 Asparagine synthase JRI60_11315 PF13537 Glutamine amidotransferase domain JRI60_11320 PF01648 4'-phosphopantetheinyl transferase superfamily JRI60_11325 PF00550 Phosphopantetheine attachment site JRI60_11330 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_11330 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_11335 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_11335 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_11340 PF00106 short chain dehydrogenase JRI60_11350 PF04199 Putative cyclase JRI60_11385 PF01047 MarR family JRI60_11390 PF08447 PAS fold JRI60_11390 PF00989 PAS fold JRI60_11390 PF00512 His Kinase A (phospho-acceptor) domain JRI60_11390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_11400 PF13367 PrsW family intramembrane metalloprotease JRI60_11410 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase JRI60_11415 PF01266 FAD dependent oxidoreductase JRI60_11425 PF00691 OmpA family JRI60_11425 PF13677 Membrane MotB of proton-channel complex MotA/MotB JRI60_11435 PF00069 Protein kinase domain JRI60_11480 PF04328 Selenoprotein, putative JRI60_11485 PF02554 Carbon starvation protein CstA JRI60_11485 PF13722 5TM C-terminal transporter carbon starvation CstA JRI60_11490 PF00067 Cytochrome P450 JRI60_11495 PF01266 FAD dependent oxidoreductase JRI60_11495 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JRI60_11500 PF02913 FAD linked oxidases, C-terminal domain JRI60_11500 PF01565 FAD binding domain JRI60_11535 PF14579 Helix-hairpin-helix motif JRI60_11535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JRI60_11535 PF07733 Bacterial DNA polymerase III alpha NTPase domain JRI60_11535 PF01336 OB-fold nucleic acid binding domain JRI60_11535 PF02811 PHP domain JRI60_11540 PF00378 Enoyl-CoA hydratase/isomerase JRI60_11560 PF00343 Carbohydrate phosphorylase JRI60_11575 PF01551 Peptidase family M23 JRI60_11575 PF04225 Opacity-associated protein A LysM-like domain JRI60_11580 PF04293 SpoVR like protein JRI60_11585 PF04285 Protein of unknown function (DUF444) JRI60_11590 PF08298 PrkA AAA domain JRI60_11590 PF06798 PrkA serine protein kinase C-terminal domain JRI60_11600 PF00005 ABC transporter JRI60_11605 PF09308 LuxQ, periplasmic JRI60_11605 PF00512 His Kinase A (phospho-acceptor) domain JRI60_11605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_11605 PF00072 Response regulator receiver domain JRI60_11615 PF00072 Response regulator receiver domain JRI60_11620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_11620 PF00512 His Kinase A (phospho-acceptor) domain JRI60_11620 PF00989 PAS fold JRI60_11625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_11625 PF00512 His Kinase A (phospho-acceptor) domain JRI60_11640 PF00072 Response regulator receiver domain JRI60_11640 PF02954 Bacterial regulatory protein, Fis family JRI60_11640 PF00158 Sigma-54 interaction domain JRI60_11645 PF00989 PAS fold JRI60_11645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_11645 PF00512 His Kinase A (phospho-acceptor) domain JRI60_11660 PF00873 AcrB/AcrD/AcrF family JRI60_11670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_11670 PF03466 LysR substrate binding domain JRI60_11675 PF05726 Pirin C-terminal cupin domain JRI60_11675 PF02678 Pirin JRI60_11680 PF00216 Bacterial DNA-binding protein JRI60_11695 PF03576 Peptidase family S58 JRI60_11700 PF01757 Acyltransferase family JRI60_11725 PF00440 Bacterial regulatory proteins, tetR family JRI60_11725 PF13305 Tetracyclin repressor-like, C-terminal domain JRI60_11730 PF07690 Major Facilitator Superfamily JRI60_11735 PF03055 Retinal pigment epithelial membrane protein JRI60_11745 PF18029 Glyoxalase-like domain JRI60_11745 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_11755 PF12796 Ankyrin repeats (3 copies) JRI60_11770 PF03793 PASTA domain JRI60_11770 PF00069 Protein kinase domain JRI60_11780 PF00722 Glycosyl hydrolases family 16 JRI60_11800 PF00512 His Kinase A (phospho-acceptor) domain JRI60_11800 PF00989 PAS fold JRI60_11800 PF00672 HAMP domain JRI60_11800 PF18698 Histidine kinase sensor domain JRI60_11800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_11810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_11815 PF00486 Transcriptional regulatory protein, C terminal JRI60_11815 PF00072 Response regulator receiver domain JRI60_11830 PF03652 Holliday junction resolvase JRI60_11865 PF02374 Anion-transporting ATPase JRI60_11870 PF02374 Anion-transporting ATPase JRI60_11880 PF13614 AAA domain JRI60_11885 PF05233 PHB accumulation regulatory domain JRI60_11885 PF07879 PHB/PHA accumulation regulator DNA-binding domain JRI60_11900 PF02416 mttA/Hcf106 family JRI60_11905 PF03009 Glycerophosphoryl diester phosphodiesterase family JRI60_11915 PF03572 Peptidase family S41 JRI60_11915 PF13180 PDZ domain JRI60_11925 PF04107 Glutamate-cysteine ligase family 2(GCS2) JRI60_11930 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_11930 PF00512 His Kinase A (phospho-acceptor) domain JRI60_11930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_11940 PF00012 Hsp70 protein JRI60_11950 PF02272 DHHA1 domain JRI60_11950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JRI60_11950 PF01411 tRNA synthetases class II (A) JRI60_11975 PF13307 Helicase C-terminal domain JRI60_12000 PF00990 Diguanylate cyclase, GGDEF domain JRI60_12000 PF00072 Response regulator receiver domain JRI60_12005 PF02390 Putative methyltransferase JRI60_12010 PF01687 Riboflavin kinase JRI60_12010 PF06574 FAD synthetase JRI60_12015 PF00437 Type II/IV secretion system protein JRI60_12015 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JRI60_12020 PF00437 Type II/IV secretion system protein JRI60_12025 PF00482 Type II secretion system (T2SS), protein F JRI60_12030 PF00989 PAS fold JRI60_12030 PF00512 His Kinase A (phospho-acceptor) domain JRI60_12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_12035 PF00072 Response regulator receiver domain JRI60_12035 PF02954 Bacterial regulatory protein, Fis family JRI60_12035 PF00158 Sigma-54 interaction domain JRI60_12045 PF00005 ABC transporter JRI60_12055 PF07963 Prokaryotic N-terminal methylation motif JRI60_12055 PF14245 Type IV pilin PilA JRI60_12060 PF06750 Bacterial Peptidase A24 N-terminal domain JRI60_12060 PF01478 Type IV leader peptidase family JRI60_12065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_12065 PF00512 His Kinase A (phospho-acceptor) domain JRI60_12070 PF02954 Bacterial regulatory protein, Fis family JRI60_12070 PF00158 Sigma-54 interaction domain JRI60_12070 PF00072 Response regulator receiver domain JRI60_12075 PF11104 Type IV pilus assembly protein PilM; JRI60_12095 PF07660 Secretin and TonB N terminus short domain JRI60_12095 PF03958 Bacterial type II/III secretion system short domain JRI60_12095 PF00263 Bacterial type II and III secretion system protein JRI60_12095 PF11741 AMIN domain JRI60_12110 PF08207 Elongation factor P (EF-P) KOW-like domain JRI60_12110 PF09285 Elongation factor P, C-terminal JRI60_12110 PF01132 Elongation factor P (EF-P) OB domain JRI60_12115 PF00364 Biotin-requiring enzyme JRI60_12120 PF02785 Biotin carboxylase C-terminal domain JRI60_12120 PF00289 Biotin carboxylase, N-terminal domain JRI60_12120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_12130 PF13401 AAA domain JRI60_12130 PF01471 Putative peptidoglycan binding domain JRI60_12140 PF07244 Surface antigen variable number repeat JRI60_12140 PF01103 Surface antigen JRI60_12170 PF03009 Glycerophosphoryl diester phosphodiesterase family JRI60_12175 PF00128 Alpha amylase, catalytic domain JRI60_12175 PF02903 Alpha amylase, N-terminal ig-like domain JRI60_12175 PF16657 Maltogenic Amylase, C-terminal domain JRI60_12180 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_12185 PF01979 Amidohydrolase family JRI60_12185 PF13382 Adenine deaminase C-terminal domain JRI60_12200 PF00797 N-acetyltransferase JRI60_12205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JRI60_12215 PF02541 Ppx/GppA phosphatase family JRI60_12220 PF08447 PAS fold JRI60_12220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_12220 PF08448 PAS fold JRI60_12240 PF04052 TolB amino-terminal domain JRI60_12240 PF07676 WD40-like Beta Propeller Repeat JRI60_12250 PF02472 Biopolymer transport protein ExbD/TolR JRI60_12255 PF01618 MotA/TolQ/ExbB proton channel family JRI60_12265 PF01177 Asp/Glu/Hydantoin racemase JRI60_12270 PF10520 B domain of TMEM189, localisation domain JRI60_12280 PF00005 ABC transporter JRI60_12285 PF18075 FtsX extracellular domain JRI60_12285 PF02687 FtsX-like permease family JRI60_12290 PF01551 Peptidase family M23 JRI60_12295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_12295 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JRI60_12300 PF00561 alpha/beta hydrolase fold JRI60_12305 PF03572 Peptidase family S41 JRI60_12305 PF13180 PDZ domain JRI60_12310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_12310 PF03466 LysR substrate binding domain JRI60_12315 PF00085 Thioredoxin JRI60_12320 PF00557 Metallopeptidase family M24 JRI60_12335 PF00056 lactate/malate dehydrogenase, NAD binding domain JRI60_12335 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JRI60_12340 PF03129 Anticodon binding domain JRI60_12340 PF02824 TGS domain JRI60_12340 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JRI60_12340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JRI60_12345 PF00023 Ankyrin repeat JRI60_12345 PF12796 Ankyrin repeats (3 copies) JRI60_12350 PF06628 Catalase-related immune-responsive JRI60_12350 PF00199 Catalase JRI60_12355 PF03466 LysR substrate binding domain JRI60_12355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_12370 PF07478 D-ala D-ala ligase C-terminus JRI60_12370 PF01820 D-ala D-ala ligase N-terminus JRI60_12400 PF02881 SRP54-type protein, helical bundle domain JRI60_12400 PF00448 SRP54-type protein, GTPase domain JRI60_12415 PF13456 Reverse transcriptase-like JRI60_12415 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_12475 PF12706 Beta-lactamase superfamily domain JRI60_12480 PF01791 DeoC/LacD family aldolase JRI60_12490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JRI60_12490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JRI60_12490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JRI60_12490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JRI60_12505 PF02653 Branched-chain amino acid transport system / permease component JRI60_12510 PF02653 Branched-chain amino acid transport system / permease component JRI60_12515 PF00005 ABC transporter JRI60_12520 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JRI60_12520 PF02885 Glycosyl transferase family, helical bundle domain JRI60_12520 PF00591 Glycosyl transferase family, a/b domain JRI60_12525 PF01048 Phosphorylase superfamily JRI60_12535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JRI60_12540 PF00248 Aldo/keto reductase family JRI60_12545 PF00128 Alpha amylase, catalytic domain JRI60_12545 PF00686 Starch binding domain JRI60_12545 PF09081 Domain of unknown function (DUF1921) JRI60_12550 PF01979 Amidohydrolase family JRI60_12595 PF12704 MacB-like periplasmic core domain JRI60_12595 PF02687 FtsX-like permease family JRI60_12595 PF00005 ABC transporter JRI60_12610 PF00069 Protein kinase domain JRI60_12620 PF06745 KaiC JRI60_12625 PF00512 His Kinase A (phospho-acceptor) domain JRI60_12625 PF00672 HAMP domain JRI60_12625 PF13426 PAS domain JRI60_12625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_12630 PF04116 Fatty acid hydroxylase superfamily JRI60_12640 PF08447 PAS fold JRI60_12640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_12640 PF08448 PAS fold JRI60_12650 PF01476 LysM domain JRI60_12650 PF00877 NlpC/P60 family JRI60_12660 PF00072 Response regulator receiver domain JRI60_12665 PF00924 Mechanosensitive ion channel JRI60_12675 PF00571 CBS domain JRI60_12690 PF00561 alpha/beta hydrolase fold JRI60_12695 PF10127 RNA repair pathway DNA polymerase beta family JRI60_12735 PF00561 alpha/beta hydrolase fold JRI60_12740 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_12740 PF17863 AAA lid domain JRI60_12745 PF01882 Protein of unknown function DUF58 JRI60_12760 PF00092 von Willebrand factor type A domain JRI60_12780 PF00005 ABC transporter JRI60_12805 PF00294 pfkB family carbohydrate kinase JRI60_12810 PF00082 Subtilase family JRI60_12815 PF00719 Inorganic pyrophosphatase JRI60_12825 PF08308 PEGA domain JRI60_12825 PF00069 Protein kinase domain JRI60_12865 PF12704 MacB-like periplasmic core domain JRI60_12865 PF02687 FtsX-like permease family JRI60_12870 PF00486 Transcriptional regulatory protein, C terminal JRI60_12870 PF00072 Response regulator receiver domain JRI60_12890 PF01514 Secretory protein of YscJ/FliF family JRI60_12900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JRI60_12910 PF00813 FliP family JRI60_12915 PF01313 Bacterial export proteins, family 3 JRI60_12920 PF01311 Bacterial export proteins, family 1 JRI60_12925 PF01312 FlhB HrpN YscU SpaS Family JRI60_12930 PF00771 FHIPEP family JRI60_12935 PF00216 Bacterial DNA-binding protein JRI60_12940 PF03631 Virulence factor BrkB JRI60_12945 PF10150 Ribonuclease E/G family JRI60_12945 PF00575 S1 RNA binding domain JRI60_12945 PF10150 Ribonuclease E/G family JRI60_12945 PF00575 S1 RNA binding domain JRI60_12955 PF00708 Acylphosphatase JRI60_12960 PF03120 NAD-dependent DNA ligase OB-fold domain JRI60_12960 PF01653 NAD-dependent DNA ligase adenylation domain JRI60_12960 PF00533 BRCA1 C Terminus (BRCT) domain JRI60_12960 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JRI60_12960 PF12826 Helix-hairpin-helix motif JRI60_12965 PF07497 Rho termination factor, RNA-binding domain JRI60_12965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JRI60_12965 PF07498 Rho termination factor, N-terminal domain JRI60_12975 PF01594 AI-2E family transporter JRI60_12985 PF02540 NAD synthase JRI60_12985 PF00958 GMP synthase C terminal domain JRI60_12985 PF00117 Glutamine amidotransferase class-I JRI60_12995 PF00120 Glutamine synthetase, catalytic domain JRI60_13000 PF00465 Iron-containing alcohol dehydrogenase JRI60_13045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_13045 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_13045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_13060 PF02381 MraZ protein, putative antitoxin-like JRI60_13070 PF01795 MraW methylase family JRI60_13075 PF04977 Septum formation initiator JRI60_13080 PF00905 Penicillin binding protein transpeptidase domain JRI60_13080 PF03717 Penicillin-binding Protein dimerisation domain JRI60_13085 PF08245 Mur ligase middle domain JRI60_13085 PF02875 Mur ligase family, glutamate ligase domain JRI60_13085 PF01225 Mur ligase family, catalytic domain JRI60_13090 PF01225 Mur ligase family, catalytic domain JRI60_13090 PF08245 Mur ligase middle domain JRI60_13090 PF02875 Mur ligase family, glutamate ligase domain JRI60_13095 PF00953 Glycosyl transferase family 4 JRI60_13095 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JRI60_13100 PF02875 Mur ligase family, glutamate ligase domain JRI60_13100 PF08245 Mur ligase middle domain JRI60_13105 PF01098 Cell cycle protein JRI60_13110 PF03033 Glycosyltransferase family 28 N-terminal domain JRI60_13110 PF04101 Glycosyltransferase family 28 C-terminal domain JRI60_13115 PF02875 Mur ligase family, glutamate ligase domain JRI60_13115 PF01225 Mur ligase family, catalytic domain JRI60_13115 PF08245 Mur ligase middle domain JRI60_13120 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JRI60_13120 PF01565 FAD binding domain JRI60_13125 PF01820 D-ala D-ala ligase N-terminus JRI60_13125 PF07478 D-ala D-ala ligase C-terminus JRI60_13130 PF03799 Cell division protein FtsQ JRI60_13130 PF08478 POTRA domain, FtsQ-type JRI60_13135 PF02491 SHS2 domain inserted in FTSA JRI60_13150 PF03793 PASTA domain JRI60_13150 PF00069 Protein kinase domain JRI60_13170 PF13007 Transposase C of IS166 homeodomain JRI60_13170 PF13817 IS66 C-terminal element JRI60_13170 PF03050 Transposase IS66 family JRI60_13170 PF13005 zinc-finger binding domain of transposase IS66 JRI60_13190 PF00069 Protein kinase domain JRI60_13215 PF04754 Putative transposase, YhgA-like JRI60_13220 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_13220 PF13191 AAA ATPase domain JRI60_13245 PF00144 Beta-lactamase JRI60_13250 PF06745 KaiC JRI60_13255 PF00072 Response regulator receiver domain JRI60_13255 PF00486 Transcriptional regulatory protein, C terminal JRI60_13280 PF00091 Tubulin/FtsZ family, GTPase domain JRI60_13280 PF12327 FtsZ family, C-terminal domain JRI60_13290 PF00289 Biotin carboxylase, N-terminal domain JRI60_13290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_13290 PF02785 Biotin carboxylase C-terminal domain JRI60_13295 PF00364 Biotin-requiring enzyme JRI60_13300 PF00378 Enoyl-CoA hydratase/isomerase JRI60_13305 PF00072 Response regulator receiver domain JRI60_13305 PF00486 Transcriptional regulatory protein, C terminal JRI60_13310 PF01061 ABC-2 type transporter JRI60_13310 PF00498 FHA domain JRI60_13310 PF00005 ABC transporter JRI60_13325 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JRI60_13330 PF00005 ABC transporter JRI60_13350 PF00152 tRNA synthetases class II (D, K and N) JRI60_13355 PF00719 Inorganic pyrophosphatase JRI60_13360 PF00248 Aldo/keto reductase family JRI60_13365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_13365 PF03466 LysR substrate binding domain JRI60_13380 PF12706 Beta-lactamase superfamily domain JRI60_13400 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JRI60_13400 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JRI60_13400 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JRI60_13410 PF00293 NUDIX domain JRI60_13410 PF03099 Biotin/lipoate A/B protein ligase family JRI60_13420 PF18496 Collagenase G catalytic helper subdomain JRI60_13420 PF08453 Peptidase family M9 N-terminal JRI60_13420 PF01752 Collagenase JRI60_13480 PF02595 Glycerate kinase family JRI60_13490 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_13490 PF17785 PUA-like domain JRI60_13505 PF04186 FxsA cytoplasmic membrane protein JRI60_13530 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_13535 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_13560 PF00083 Sugar (and other) transporter JRI60_13570 PF00571 CBS domain JRI60_13570 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_13580 PF00483 Nucleotidyl transferase JRI60_13595 PF00588 SpoU rRNA Methylase family JRI60_13600 PF01556 DnaJ C terminal domain JRI60_13600 PF00226 DnaJ domain JRI60_13600 PF00684 DnaJ central domain JRI60_13605 PF00486 Transcriptional regulatory protein, C terminal JRI60_13605 PF00072 Response regulator receiver domain JRI60_13610 PF00814 Glycoprotease family JRI60_13615 PF00398 Ribosomal RNA adenine dimethylase JRI60_13630 PF01712 Deoxynucleoside kinase JRI60_13635 PF02548 Ketopantoate hydroxymethyltransferase JRI60_13640 PF02569 Pantoate-beta-alanine ligase JRI60_13645 PF01668 SmpB protein JRI60_13655 PF08308 PEGA domain JRI60_13655 PF00069 Protein kinase domain JRI60_13665 PF01966 HD domain JRI60_13680 PF00795 Carbon-nitrogen hydrolase JRI60_13685 PF17384 RimP C-terminal SH3 domain JRI60_13685 PF02576 RimP N-terminal domain JRI60_13690 PF13184 NusA-like KH domain JRI60_13690 PF00575 S1 RNA binding domain JRI60_13690 PF08529 NusA N-terminal domain JRI60_13700 PF00009 Elongation factor Tu GTP binding domain JRI60_13700 PF04760 Translation initiation factor IF-2, N-terminal region JRI60_13700 PF11987 Translation-initiation factor 2 JRI60_13710 PF02033 Ribosome-binding factor A JRI60_13715 PF01509 TruB family pseudouridylate synthase (N terminal domain) JRI60_13715 PF16198 tRNA pseudouridylate synthase B C-terminal domain JRI60_13715 PF09157 Pseudouridine synthase II TruB, C-terminal JRI60_13720 PF00312 Ribosomal protein S15 JRI60_13725 PF01138 3' exoribonuclease family, domain 1 JRI60_13725 PF03725 3' exoribonuclease family, domain 2 JRI60_13725 PF00575 S1 RNA binding domain JRI60_13725 PF00013 KH domain JRI60_13725 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JRI60_13730 PF10397 Adenylosuccinate lyase C-terminus JRI60_13730 PF00206 Lyase JRI60_13740 PF00069 Protein kinase domain JRI60_13740 PF03793 PASTA domain JRI60_13745 PF00692 dUTPase JRI60_13750 PF04225 Opacity-associated protein A LysM-like domain JRI60_13750 PF01551 Peptidase family M23 JRI60_13760 PF01259 SAICAR synthetase JRI60_13780 PF17820 PDZ domain JRI60_13780 PF13180 PDZ domain JRI60_13795 PF00578 AhpC/TSA family JRI60_13810 PF00282 Pyridoxal-dependent decarboxylase conserved domain JRI60_13820 PF00691 OmpA family JRI60_13830 PF05193 Peptidase M16 inactive domain JRI60_13830 PF00675 Insulinase (Peptidase family M16) JRI60_13910 PF01695 IstB-like ATP binding protein JRI60_13920 PF00665 Integrase core domain JRI60_13925 PF01695 IstB-like ATP binding protein JRI60_13930 PF00665 Integrase core domain JRI60_13955 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_13955 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_13955 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_13955 PF08659 KR domain JRI60_13955 PF00550 Phosphopantetheine attachment site JRI60_13955 PF14765 Polyketide synthase dehydratase JRI60_13955 PF00698 Acyl transferase domain JRI60_13990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_13990 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_13990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_13995 PF00069 Protein kinase domain JRI60_13995 PF03793 PASTA domain JRI60_14050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_14050 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_14050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_14055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_14055 PF00512 His Kinase A (phospho-acceptor) domain JRI60_14055 PF00989 PAS fold JRI60_14095 PF00753 Metallo-beta-lactamase superfamily JRI60_14110 PF00196 Bacterial regulatory proteins, luxR family JRI60_14110 PF00072 Response regulator receiver domain JRI60_14115 PF13493 Domain of unknown function (DUF4118) JRI60_14115 PF13426 PAS domain JRI60_14115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_14115 PF08447 PAS fold JRI60_14115 PF00512 His Kinase A (phospho-acceptor) domain JRI60_14115 PF00989 PAS fold JRI60_14140 PF02678 Pirin JRI60_14140 PF17954 Quercetinase C-terminal cupin domain JRI60_14170 PF00703 Glycosyl hydrolases family 2 JRI60_14170 PF16353 Domain of unknown function(DUF4981) JRI60_14170 PF02929 Beta galactosidase small chain JRI60_14170 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JRI60_14170 PF02837 Glycosyl hydrolases family 2, sugar binding domain JRI60_14235 PF02566 OsmC-like protein JRI60_14245 PF00561 alpha/beta hydrolase fold JRI60_14250 PF01794 Ferric reductase like transmembrane component JRI60_14260 PF02683 Cytochrome C biogenesis protein transmembrane region JRI60_14265 PF17991 Thioredoxin like C-terminal domain JRI60_14265 PF02683 Cytochrome C biogenesis protein transmembrane region JRI60_14265 PF00578 AhpC/TSA family JRI60_14270 PF00072 Response regulator receiver domain JRI60_14270 PF00486 Transcriptional regulatory protein, C terminal JRI60_14275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_14275 PF00512 His Kinase A (phospho-acceptor) domain JRI60_14275 PF00672 HAMP domain JRI60_14280 PF00107 Zinc-binding dehydrogenase JRI60_14280 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_14285 PF00440 Bacterial regulatory proteins, tetR family JRI60_14310 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_14315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_14315 PF00989 PAS fold JRI60_14315 PF17203 Single cache domain 3 JRI60_14315 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JRI60_14330 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_14330 PF00107 Zinc-binding dehydrogenase JRI60_14340 PF00171 Aldehyde dehydrogenase family JRI60_14345 PF00378 Enoyl-CoA hydratase/isomerase JRI60_14345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_14345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_14350 PF00108 Thiolase, N-terminal domain JRI60_14350 PF02803 Thiolase, C-terminal domain JRI60_14355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_14355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_14355 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_14360 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_14360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_14360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_14365 PF00501 AMP-binding enzyme JRI60_14380 PF00378 Enoyl-CoA hydratase/isomerase JRI60_14390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_14390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_14390 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_14395 PF01636 Phosphotransferase enzyme family JRI60_14430 PF01494 FAD binding domain JRI60_14435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_14435 PF03466 LysR substrate binding domain JRI60_14440 PF03334 Na+/H+ antiporter subunit JRI60_14445 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JRI60_14450 PF01899 Na+/H+ ion antiporter subunit JRI60_14455 PF00361 Proton-conducting membrane transporter JRI60_14460 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JRI60_14465 PF13244 Domain of unknown function (DUF4040) JRI60_14465 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JRI60_14465 PF00361 Proton-conducting membrane transporter JRI60_14465 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JRI60_14500 PF00873 AcrB/AcrD/AcrF family JRI60_14505 PF00529 HlyD membrane-fusion protein of T1SS JRI60_14505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_14515 PF03793 PASTA domain JRI60_14515 PF00069 Protein kinase domain JRI60_14520 PF01209 ubiE/COQ5 methyltransferase family JRI60_14525 PF13411 MerR HTH family regulatory protein JRI60_14540 PF00069 Protein kinase domain JRI60_14540 PF03793 PASTA domain JRI60_14555 PF07237 Protein of unknown function (DUF1428) JRI60_14595 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JRI60_14605 PF00069 Protein kinase domain JRI60_14615 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JRI60_14630 PF09286 Pro-kumamolisin, activation domain JRI60_14630 PF00082 Subtilase family JRI60_14635 PF03167 Uracil DNA glycosylase superfamily JRI60_14645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_14645 PF00512 His Kinase A (phospho-acceptor) domain JRI60_14645 PF00672 HAMP domain JRI60_14650 PF02333 Phytase JRI60_14655 PF01738 Dienelactone hydrolase family JRI60_14670 PF00672 HAMP domain JRI60_14670 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_14670 PF08448 PAS fold JRI60_14670 PF00512 His Kinase A (phospho-acceptor) domain JRI60_14670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_14685 PF04542 Sigma-70 region 2 JRI60_14685 PF08281 Sigma-70, region 4 JRI60_14690 PF03795 YCII-related domain JRI60_14695 PF01435 Peptidase family M48 JRI60_14700 PF02838 Glycosyl hydrolase family 20, domain 2 JRI60_14700 PF03173 Putative carbohydrate binding domain JRI60_14700 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JRI60_14700 PF00728 Glycosyl hydrolase family 20, catalytic domain JRI60_14715 PF00664 ABC transporter transmembrane region JRI60_14715 PF00005 ABC transporter JRI60_14720 PF00664 ABC transporter transmembrane region JRI60_14720 PF00005 ABC transporter JRI60_14725 PF02631 RecX family JRI60_14735 PF00691 OmpA family JRI60_14735 PF01389 OmpA-like transmembrane domain JRI60_14740 PF00707 Translation initiation factor IF-3, C-terminal domain JRI60_14740 PF05198 Translation initiation factor IF-3, N-terminal domain JRI60_14755 PF00067 Cytochrome P450 JRI60_14760 PF08534 Redoxin JRI60_14765 PF02654 Cobalamin-5-phosphate synthase JRI60_14770 PF02277 Phosphoribosyltransferase JRI60_14775 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JRI60_14775 PF07685 CobB/CobQ-like glutamine amidotransferase domain JRI60_14780 PF00155 Aminotransferase class I and II JRI60_14785 PF03186 CobD/Cbib protein JRI60_14790 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JRI60_14800 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JRI60_14800 PF07685 CobB/CobQ-like glutamine amidotransferase domain JRI60_14805 PF12557 Cob(I)alamin adenosyltransferase N terminal JRI60_14805 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JRI60_14810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_14810 PF10414 Sirohaem synthase dimerisation region JRI60_14810 PF14824 Sirohaem biosynthesis protein central JRI60_14815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_14825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JRI60_14825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_14830 PF01890 Cobalamin synthesis G C-terminus JRI60_14830 PF11761 Cobalamin biosynthesis central region JRI60_14830 PF11760 Cobalamin synthesis G N-terminal JRI60_14835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_14840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_14845 PF02570 Precorrin-8X methylmutase JRI60_14850 PF01888 CbiD JRI60_14865 PF01903 CbiX JRI60_14870 PF00005 ABC transporter JRI60_14885 PF01891 Cobalt uptake substrate-specific transmembrane region JRI60_14890 PF14592 Chondroitinase B JRI60_14915 PF00437 Type II/IV secretion system protein JRI60_14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_14950 PF00512 His Kinase A (phospho-acceptor) domain JRI60_14950 PF02743 Cache domain JRI60_14960 PF10282 Lactonase, 7-bladed beta-propeller JRI60_14970 PF03099 Biotin/lipoate A/B protein ligase family JRI60_14980 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) JRI60_14985 PF00361 Proton-conducting membrane transporter JRI60_14995 PF01740 STAS domain JRI60_14995 PF00916 Sulfate permease family JRI60_15000 PF08281 Sigma-70, region 4 JRI60_15000 PF04542 Sigma-70 region 2 JRI60_15005 PF00561 alpha/beta hydrolase fold JRI60_15010 PF03551 Transcriptional regulator PadR-like family JRI60_15010 PF13847 Methyltransferase domain JRI60_15020 PF02463 RecF/RecN/SMC N terminal domain JRI60_15025 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_15025 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_15025 PF03413 Peptidase propeptide and YPEB domain JRI60_15025 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_15035 PF00975 Thioesterase domain JRI60_15040 PF06832 Penicillin-Binding Protein C-terminus Family JRI60_15040 PF00912 Transglycosylase JRI60_15040 PF00905 Penicillin binding protein transpeptidase domain JRI60_15045 PF01835 MG2 domain JRI60_15045 PF00207 Alpha-2-macroglobulin family JRI60_15045 PF07703 Alpha-2-macroglobulin bait region domain JRI60_15045 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JRI60_15055 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_15055 PF00107 Zinc-binding dehydrogenase JRI60_15060 PF13419 Haloacid dehalogenase-like hydrolase JRI60_15090 PF07963 Prokaryotic N-terminal methylation motif JRI60_15090 PF14245 Type IV pilin PilA JRI60_15095 PF14492 Elongation Factor G, domain II JRI60_15095 PF00679 Elongation factor G C-terminus JRI60_15095 PF03764 Elongation factor G, domain IV JRI60_15095 PF00009 Elongation factor Tu GTP binding domain JRI60_15100 PF00440 Bacterial regulatory proteins, tetR family JRI60_15100 PF16859 Tetracyclin repressor-like, C-terminal domain JRI60_15105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_15120 PF10502 Signal peptidase, peptidase S26 JRI60_15125 PF13302 Acetyltransferase (GNAT) domain JRI60_15125 PF00027 Cyclic nucleotide-binding domain JRI60_15170 PF00106 short chain dehydrogenase JRI60_15185 PF00512 His Kinase A (phospho-acceptor) domain JRI60_15185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_15195 PF13520 Amino acid permease JRI60_15200 PF02146 Sir2 family JRI60_15225 PF00465 Iron-containing alcohol dehydrogenase JRI60_15240 PF00149 Calcineurin-like phosphoesterase JRI60_15245 PF00912 Transglycosylase JRI60_15270 PF03705 CheR methyltransferase, all-alpha domain JRI60_15270 PF01739 CheR methyltransferase, SAM binding domain JRI60_15280 PF17200 Single Cache domain 2 JRI60_15280 PF00672 HAMP domain JRI60_15280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_15285 PF01584 CheW-like domain JRI60_15285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_15285 PF01627 Hpt domain JRI60_15285 PF00072 Response regulator receiver domain JRI60_15290 PF00072 Response regulator receiver domain JRI60_15290 PF01339 CheB methylesterase JRI60_15295 PF00072 Response regulator receiver domain JRI60_15295 PF00486 Transcriptional regulatory protein, C terminal JRI60_15355 PF01965 DJ-1/PfpI family JRI60_15360 PF13419 Haloacid dehalogenase-like hydrolase JRI60_15365 PF11842 Domain of unknown function (DUF3362) JRI60_15365 PF04055 Radical SAM superfamily JRI60_15365 PF08497 Radical SAM N-terminal JRI60_15375 PF01739 CheR methyltransferase, SAM binding domain JRI60_15375 PF03705 CheR methyltransferase, all-alpha domain JRI60_15380 PF01627 Hpt domain JRI60_15380 PF00672 HAMP domain JRI60_15380 PF00512 His Kinase A (phospho-acceptor) domain JRI60_15380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_15380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_15380 PF00072 Response regulator receiver domain JRI60_15385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_15385 PF00512 His Kinase A (phospho-acceptor) domain JRI60_15385 PF12833 Helix-turn-helix domain JRI60_15385 PF07494 Two component regulator propeller JRI60_15385 PF07495 Y_Y_Y domain JRI60_15385 PF00072 Response regulator receiver domain JRI60_15400 PF04241 Protein of unknown function (DUF423) JRI60_15410 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JRI60_15410 PF07676 WD40-like Beta Propeller Repeat JRI60_15410 PF00326 Prolyl oligopeptidase family JRI60_15420 PF02525 Flavodoxin-like fold JRI60_15425 PF00266 Aminotransferase class-V JRI60_15430 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_15435 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_15450 PF04542 Sigma-70 region 2 JRI60_15450 PF08281 Sigma-70, region 4 JRI60_15480 PF02127 Aminopeptidase I zinc metalloprotease (M18) JRI60_15485 PF00072 Response regulator receiver domain JRI60_15485 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_15490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_15490 PF08447 PAS fold JRI60_15490 PF08448 PAS fold JRI60_15495 PF13180 PDZ domain JRI60_15495 PF17820 PDZ domain JRI60_15500 PF00067 Cytochrome P450 JRI60_15505 PF17760 UvrA interaction domain JRI60_15505 PF17755 UvrA DNA-binding domain JRI60_15560 PF03793 PASTA domain JRI60_15560 PF00069 Protein kinase domain JRI60_15565 PF00069 Protein kinase domain JRI60_15565 PF03793 PASTA domain JRI60_15570 PF00282 Pyridoxal-dependent decarboxylase conserved domain JRI60_15585 PF02335 Cytochrome c552 JRI60_15625 PF00578 AhpC/TSA family JRI60_15630 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JRI60_15650 PF01555 DNA methylase JRI60_15655 PF00375 Sodium:dicarboxylate symporter family JRI60_15660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_15680 PF08241 Methyltransferase domain JRI60_15685 PF00005 ABC transporter JRI60_15685 PF12848 ABC transporter JRI60_15690 PF00005 ABC transporter JRI60_15690 PF12848 ABC transporter JRI60_15690 PF16326 ABC transporter C-terminal domain JRI60_15695 PF00270 DEAD/DEAH box helicase JRI60_15695 PF00271 Helicase conserved C-terminal domain JRI60_15700 PF14492 Elongation Factor G, domain II JRI60_15700 PF03144 Elongation factor Tu domain 2 JRI60_15700 PF00009 Elongation factor Tu GTP binding domain JRI60_15700 PF00679 Elongation factor G C-terminus JRI60_15700 PF03764 Elongation factor G, domain IV JRI60_15710 PF00849 RNA pseudouridylate synthase JRI60_15710 PF01479 S4 domain JRI60_15730 PF00588 SpoU rRNA Methylase family JRI60_15740 PF17962 Bacterial macroglobulin domain 6 JRI60_15740 PF00207 Alpha-2-macroglobulin family JRI60_15740 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JRI60_15740 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JRI60_15740 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JRI60_15740 PF01835 MG2 domain JRI60_15740 PF07703 Alpha-2-macroglobulin bait region domain JRI60_15745 PF00512 His Kinase A (phospho-acceptor) domain JRI60_15745 PF00072 Response regulator receiver domain JRI60_15745 PF13188 PAS domain JRI60_15745 PF08448 PAS fold JRI60_15745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_15750 PF00072 Response regulator receiver domain JRI60_15755 PF01590 GAF domain JRI60_15755 PF00360 Phytochrome region JRI60_15755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_15755 PF00512 His Kinase A (phospho-acceptor) domain JRI60_15755 PF08446 PAS fold JRI60_15760 PF00512 His Kinase A (phospho-acceptor) domain JRI60_15760 PF00989 PAS fold JRI60_15760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_15765 PF00270 DEAD/DEAH box helicase JRI60_15765 PF00271 Helicase conserved C-terminal domain JRI60_15765 PF00570 HRDC domain JRI60_15765 PF16124 RecQ zinc-binding JRI60_15765 PF09382 RQC domain JRI60_15770 PF17990 L-Lysine epsilon oxidase N-terminal JRI60_15770 PF18417 L-lysine epsilon oxidase C-terminal domain JRI60_15775 PF01494 FAD binding domain JRI60_15785 PF00905 Penicillin binding protein transpeptidase domain JRI60_15785 PF06832 Penicillin-Binding Protein C-terminus Family JRI60_15785 PF00912 Transglycosylase JRI60_15800 PF01593 Flavin containing amine oxidoreductase JRI60_15810 PF13091 PLD-like domain JRI60_15810 PF13396 Phospholipase_D-nuclease N-terminal JRI60_15845 PF00563 EAL domain JRI60_15845 PF12792 CSS motif domain associated with EAL JRI60_15865 PF12704 MacB-like periplasmic core domain JRI60_15865 PF02687 FtsX-like permease family JRI60_15865 PF00005 ABC transporter JRI60_15875 PF00005 ABC transporter JRI60_15910 PF04545 Sigma-70, region 4 JRI60_15910 PF04539 Sigma-70 region 3 JRI60_15910 PF04542 Sigma-70 region 2 JRI60_15920 PF08345 Flagellar M-ring protein C-terminal JRI60_15920 PF01514 Secretory protein of YscJ/FliF family JRI60_15930 PF02108 Flagellar assembly protein FliH JRI60_15935 PF18269 T3SS EscN ATPase C-terminal domain JRI60_15935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JRI60_15935 PF02874 ATP synthase alpha/beta family, beta-barrel domain JRI60_15950 PF04509 CheC-like family JRI60_15950 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JRI60_15960 PF00813 FliP family JRI60_15965 PF01313 Bacterial export proteins, family 3 JRI60_15970 PF01311 Bacterial export proteins, family 1 JRI60_15975 PF01312 FlhB HrpN YscU SpaS Family JRI60_15980 PF01312 FlhB HrpN YscU SpaS Family JRI60_16025 PF00771 FHIPEP family JRI60_16035 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_16065 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_16070 PF00069 Protein kinase domain JRI60_16070 PF03793 PASTA domain JRI60_16080 PF00106 short chain dehydrogenase JRI60_16085 PF00425 chorismate binding enzyme JRI60_16090 PF13193 AMP-binding enzyme C-terminal domain JRI60_16090 PF00501 AMP-binding enzyme JRI60_16095 PF00857 Isochorismatase family JRI60_16095 PF00550 Phosphopantetheine attachment site JRI60_16100 PF00501 AMP-binding enzyme JRI60_16100 PF00668 Condensation domain JRI60_16100 PF00550 Phosphopantetheine attachment site JRI60_16100 PF13193 AMP-binding enzyme C-terminal domain JRI60_16100 PF00975 Thioesterase domain JRI60_16105 PF01474 Class-II DAHP synthetase family JRI60_16120 PF01618 MotA/TolQ/ExbB proton channel family JRI60_16125 PF02472 Biopolymer transport protein ExbD/TolR JRI60_16140 PF03793 PASTA domain JRI60_16140 PF00069 Protein kinase domain JRI60_16145 PF03793 PASTA domain JRI60_16145 PF00069 Protein kinase domain JRI60_16165 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_16165 PF17863 AAA lid domain JRI60_16185 PF12849 PBP superfamily domain JRI60_16190 PF00593 TonB dependent receptor JRI60_16190 PF07715 TonB-dependent Receptor Plug Domain JRI60_16195 PF13188 PAS domain JRI60_16195 PF08448 PAS fold JRI60_16195 PF00072 Response regulator receiver domain JRI60_16195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_16195 PF00512 His Kinase A (phospho-acceptor) domain JRI60_16215 PF13538 UvrD-like helicase C-terminal domain JRI60_16235 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_16235 PF00107 Zinc-binding dehydrogenase JRI60_16235 PF14765 Polyketide synthase dehydratase JRI60_16235 PF00550 Phosphopantetheine attachment site JRI60_16235 PF08659 KR domain JRI60_16235 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_16235 PF00698 Acyl transferase domain JRI60_16235 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_16235 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_16250 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_16250 PF00571 CBS domain JRI60_16255 PF00462 Glutaredoxin JRI60_16270 PF00072 Response regulator receiver domain JRI60_16270 PF00196 Bacterial regulatory proteins, luxR family JRI60_16275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_16275 PF07730 Histidine kinase JRI60_16280 PF00069 Protein kinase domain JRI60_16285 PF07498 Rho termination factor, N-terminal domain JRI60_16285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JRI60_16285 PF07497 Rho termination factor, RNA-binding domain JRI60_16290 PF01343 Peptidase family S49 JRI60_16305 PF00986 DNA gyrase B subunit, carboxyl terminus JRI60_16305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_16305 PF00204 DNA gyrase B JRI60_16305 PF01751 Toprim domain JRI60_16310 PF00521 DNA gyrase/topoisomerase IV, subunit A JRI60_16310 PF03989 DNA gyrase C-terminal domain, beta-propeller JRI60_16320 PF16123 Hydroxyacylglutathione hydrolase C-terminus JRI60_16320 PF00753 Metallo-beta-lactamase superfamily JRI60_16330 PF10459 Peptidase S46 JRI60_16340 PF04542 Sigma-70 region 2 JRI60_16340 PF08281 Sigma-70, region 4 JRI60_16345 PF00072 Response regulator receiver domain JRI60_16345 PF02954 Bacterial regulatory protein, Fis family JRI60_16345 PF00158 Sigma-54 interaction domain JRI60_16385 PF02501 Type II secretion system (T2SS), protein I JRI60_16385 PF07963 Prokaryotic N-terminal methylation motif JRI60_16400 PF08334 Type II secretion system (T2SS), protein G JRI60_16400 PF07963 Prokaryotic N-terminal methylation motif JRI60_16410 PF00482 Type II secretion system (T2SS), protein F JRI60_16415 PF00437 Type II/IV secretion system protein JRI60_16420 PF00263 Bacterial type II and III secretion system protein JRI60_16420 PF03958 Bacterial type II/III secretion system short domain JRI60_16430 PF02954 Bacterial regulatory protein, Fis family JRI60_16430 PF00072 Response regulator receiver domain JRI60_16430 PF00158 Sigma-54 interaction domain JRI60_16445 PF03150 Di-haem cytochrome c peroxidase JRI60_16445 PF00034 Cytochrome c JRI60_16475 PF01636 Phosphotransferase enzyme family JRI60_16510 PF02872 5'-nucleotidase, C-terminal domain JRI60_16510 PF00746 LPXTG cell wall anchor motif JRI60_16510 PF00565 Staphylococcal nuclease homologue JRI60_16510 PF00149 Calcineurin-like phosphoesterase JRI60_16515 PF07694 5TMR of 5TMR-LYT JRI60_16515 PF06580 Histidine kinase JRI60_16515 PF13492 GAF domain JRI60_16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_16520 PF04397 LytTr DNA-binding domain JRI60_16520 PF00072 Response regulator receiver domain JRI60_16535 PF04073 Aminoacyl-tRNA editing domain JRI60_16540 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JRI60_16540 PF02222 ATP-grasp domain JRI60_16545 PF00731 AIR carboxylase JRI60_16575 PF02504 Fatty acid synthesis protein JRI60_16605 PF13247 4Fe-4S dicluster domain JRI60_16605 PF00037 4Fe-4S binding domain JRI60_16620 PF01568 Molydopterin dinucleotide binding domain JRI60_16620 PF00384 Molybdopterin oxidoreductase JRI60_16620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JRI60_16640 PF01931 Protein of unknown function DUF84 JRI60_16650 PF01743 Poly A polymerase head domain JRI60_16650 PF12626 Polymerase A arginine-rich C-terminus JRI60_16650 PF12627 Probable RNA and SrmB- binding site of polymerase A JRI60_16655 PF00817 impB/mucB/samB family JRI60_16655 PF11799 impB/mucB/samB family C-terminal domain JRI60_16665 PF00849 RNA pseudouridylate synthase JRI60_16670 PF07714 Protein tyrosine kinase JRI60_16675 PF00069 Protein kinase domain JRI60_16675 PF08308 PEGA domain JRI60_16680 PF01255 Putative undecaprenyl diphosphate synthase JRI60_16690 PF02163 Peptidase family M50 JRI60_16690 PF17820 PDZ domain JRI60_16695 PF03330 Lytic transglycolase JRI60_16700 PF00814 Glycoprotease family JRI60_16705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_16705 PF00672 HAMP domain JRI60_16715 PF02774 Semialdehyde dehydrogenase, dimerisation domain JRI60_16715 PF01118 Semialdehyde dehydrogenase, NAD binding domain JRI60_16735 PF02391 MoaE protein JRI60_16745 PF02163 Peptidase family M50 JRI60_16745 PF17820 PDZ domain JRI60_16750 PF13344 Haloacid dehalogenase-like hydrolase JRI60_16750 PF00293 NUDIX domain JRI60_16770 PF01351 Ribonuclease HII JRI60_16790 PF01189 16S rRNA methyltransferase RsmB/F JRI60_16790 PF01029 NusB family JRI60_16795 PF00149 Calcineurin-like phosphoesterase JRI60_16795 PF16656 Purple acid Phosphatase, N-terminal domain JRI60_16810 PF02223 Thymidylate kinase JRI60_16830 PF00069 Protein kinase domain JRI60_16835 PF00581 Rhodanese-like domain JRI60_16840 PF00899 ThiF family JRI60_16845 PF01521 Iron-sulphur cluster biosynthesis JRI60_16850 PF03061 Thioesterase superfamily JRI60_16860 PF03009 Glycerophosphoryl diester phosphodiesterase family JRI60_16870 PF08308 PEGA domain JRI60_16870 PF00069 Protein kinase domain JRI60_16895 PF13649 Methyltransferase domain JRI60_16905 PF02445 Quinolinate synthetase A protein JRI60_16915 PF08241 Methyltransferase domain JRI60_16920 PF13426 PAS domain JRI60_16920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_16920 PF00512 His Kinase A (phospho-acceptor) domain JRI60_16920 PF08448 PAS fold JRI60_16920 PF00072 Response regulator receiver domain JRI60_16930 PF00854 POT family JRI60_16935 PF00854 POT family JRI60_16955 PF00652 Ricin-type beta-trefoil lectin domain JRI60_16955 PF00331 Glycosyl hydrolase family 10 JRI60_16990 PF06441 Epoxide hydrolase N terminus JRI60_16995 PF08713 DNA alkylation repair enzyme JRI60_17030 PF03330 Lytic transglycolase JRI60_17040 PF02798 Glutathione S-transferase, N-terminal domain JRI60_17045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_17045 PF03466 LysR substrate binding domain JRI60_17075 PF01636 Phosphotransferase enzyme family JRI60_17100 PF01433 Peptidase family M1 domain JRI60_17105 PF00378 Enoyl-CoA hydratase/isomerase JRI60_17105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_17105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_17110 PF00108 Thiolase, N-terminal domain JRI60_17110 PF02803 Thiolase, C-terminal domain JRI60_17115 PF00873 AcrB/AcrD/AcrF family JRI60_17135 PF05192 MutS domain III JRI60_17135 PF00488 MutS domain V JRI60_17135 PF05190 MutS family domain IV JRI60_17135 PF05188 MutS domain II JRI60_17135 PF01624 MutS domain I JRI60_17140 PF13545 Crp-like helix-turn-helix domain JRI60_17140 PF00027 Cyclic nucleotide-binding domain JRI60_17145 PF00072 Response regulator receiver domain JRI60_17145 PF00158 Sigma-54 interaction domain JRI60_17145 PF02954 Bacterial regulatory protein, Fis family JRI60_17150 PF00989 PAS fold JRI60_17150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_17150 PF00512 His Kinase A (phospho-acceptor) domain JRI60_17170 PF00072 Response regulator receiver domain JRI60_17170 PF13426 PAS domain JRI60_17170 PF08448 PAS fold JRI60_17170 PF00512 His Kinase A (phospho-acceptor) domain JRI60_17170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_17190 PF04304 Protein of unknown function (DUF454) JRI60_17195 PF18089 DAPG hydrolase PhiG domain JRI60_17200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_17200 PF00072 Response regulator receiver domain JRI60_17200 PF13426 PAS domain JRI60_17200 PF08448 PAS fold JRI60_17200 PF00512 His Kinase A (phospho-acceptor) domain JRI60_17205 PF00535 Glycosyl transferase family 2 JRI60_17215 PF04349 Periplasmic glucan biosynthesis protein, MdoG JRI60_17220 PF00248 Aldo/keto reductase family JRI60_17245 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_17255 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JRI60_17260 PF01979 Amidohydrolase family JRI60_17265 PF17785 PUA-like domain JRI60_17265 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_17270 PF01627 Hpt domain JRI60_17270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_17270 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_17270 PF09078 CheY binding JRI60_17270 PF01584 CheW-like domain JRI60_17280 PF00072 Response regulator receiver domain JRI60_17280 PF00486 Transcriptional regulatory protein, C terminal JRI60_17290 PF00069 Protein kinase domain JRI60_17295 PF01416 tRNA pseudouridine synthase JRI60_17315 PF03793 PASTA domain JRI60_17315 PF00069 Protein kinase domain JRI60_17320 PF01381 Helix-turn-helix JRI60_17320 PF07883 Cupin domain JRI60_17335 PF03793 PASTA domain JRI60_17335 PF00069 Protein kinase domain JRI60_17365 PF00893 Small Multidrug Resistance protein JRI60_17385 PF05661 Protein of unknown function (DUF808) JRI60_17405 PF03466 LysR substrate binding domain JRI60_17405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_17420 PF00360 Phytochrome region JRI60_17420 PF01590 GAF domain JRI60_17420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_17420 PF00512 His Kinase A (phospho-acceptor) domain JRI60_17420 PF08446 PAS fold JRI60_17455 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain JRI60_17455 PF04616 Glycosyl hydrolases family 43 JRI60_17460 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain JRI60_17460 PF04616 Glycosyl hydrolases family 43 JRI60_17470 PF00356 Bacterial regulatory proteins, lacI family JRI60_17475 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JRI60_17480 PF11762 L-arabinose isomerase C-terminal domain JRI60_17480 PF02610 L-arabinose isomerase JRI60_17485 PF13407 Periplasmic binding protein domain JRI60_17490 PF00005 ABC transporter JRI60_17495 PF02653 Branched-chain amino acid transport system / permease component JRI60_17500 PF02653 Branched-chain amino acid transport system / permease component JRI60_17505 PF00596 Class II Aldolase and Adducin N-terminal domain JRI60_17540 PF00011 Hsp20/alpha crystallin family JRI60_17545 PF00043 Glutathione S-transferase, C-terminal domain JRI60_17545 PF02798 Glutathione S-transferase, N-terminal domain JRI60_17575 PF04542 Sigma-70 region 2 JRI60_17575 PF08281 Sigma-70, region 4 JRI60_17590 PF00144 Beta-lactamase JRI60_17615 PF01695 IstB-like ATP binding protein JRI60_17620 PF00665 Integrase core domain JRI60_17640 PF00069 Protein kinase domain JRI60_17640 PF03793 PASTA domain JRI60_17655 PF03793 PASTA domain JRI60_17655 PF00069 Protein kinase domain JRI60_17685 PF00144 Beta-lactamase JRI60_17700 PF12697 Alpha/beta hydrolase family JRI60_17705 PF00043 Glutathione S-transferase, C-terminal domain JRI60_17705 PF02798 Glutathione S-transferase, N-terminal domain JRI60_17740 PF00069 Protein kinase domain JRI60_17760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_17760 PF02785 Biotin carboxylase C-terminal domain JRI60_17760 PF00289 Biotin carboxylase, N-terminal domain JRI60_17760 PF00364 Biotin-requiring enzyme JRI60_17770 PF12833 Helix-turn-helix domain JRI60_17770 PF01965 DJ-1/PfpI family JRI60_17805 PF00501 AMP-binding enzyme JRI60_17805 PF13193 AMP-binding enzyme C-terminal domain JRI60_17845 PF00027 Cyclic nucleotide-binding domain JRI60_17845 PF13302 Acetyltransferase (GNAT) domain JRI60_17860 PF07715 TonB-dependent Receptor Plug Domain JRI60_17860 PF00593 TonB dependent receptor JRI60_17870 PF17871 AAA lid domain JRI60_17870 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_17870 PF07724 AAA domain (Cdc48 subfamily) JRI60_17870 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_17870 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_17895 PF07722 Peptidase C26 JRI60_17900 PF08543 Phosphomethylpyrimidine kinase JRI60_17905 PF03796 DnaB-like helicase C terminal domain JRI60_17905 PF00772 DnaB-like helicase N terminal domain JRI60_17910 PF01281 Ribosomal protein L9, N-terminal domain JRI60_17910 PF03948 Ribosomal protein L9, C-terminal domain JRI60_17915 PF01084 Ribosomal protein S18 JRI60_17920 PF01250 Ribosomal protein S6 JRI60_17925 PF01195 Peptidyl-tRNA hydrolase JRI60_17930 PF01386 Ribosomal L25p family JRI60_17930 PF14693 Ribosomal protein TL5, C-terminal domain JRI60_17935 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JRI60_17935 PF14572 Phosphoribosyl synthetase-associated domain JRI60_17940 PF04026 SpoVG JRI60_17950 PF00265 Thymidine kinase JRI60_17960 PF11734 TilS substrate C-terminal domain JRI60_17960 PF01171 PP-loop family JRI60_17960 PF00156 Phosphoribosyl transferase domain JRI60_17980 PF01678 Diaminopimelate epimerase JRI60_17985 PF00512 His Kinase A (phospho-acceptor) domain JRI60_17985 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_17985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_17985 PF00072 Response regulator receiver domain JRI60_17990 PF00486 Transcriptional regulatory protein, C terminal JRI60_17990 PF00072 Response regulator receiver domain JRI60_17995 PF07715 TonB-dependent Receptor Plug Domain JRI60_17995 PF00593 TonB dependent receptor JRI60_18005 PF00069 Protein kinase domain JRI60_18005 PF08308 PEGA domain JRI60_18010 PF13280 WYL domain JRI60_18010 PF08279 HTH domain JRI60_18035 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_18035 PF03413 Peptidase propeptide and YPEB domain JRI60_18035 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_18035 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_18055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_18055 PF00072 Response regulator receiver domain JRI60_18055 PF09308 LuxQ, periplasmic JRI60_18055 PF00512 His Kinase A (phospho-acceptor) domain JRI60_18060 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JRI60_18060 PF04616 Glycosyl hydrolases family 43 JRI60_18065 PF00067 Cytochrome P450 JRI60_18070 PF08447 PAS fold JRI60_18070 PF08448 PAS fold JRI60_18070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_18100 PF04616 Glycosyl hydrolases family 43 JRI60_18100 PF03422 Carbohydrate binding module (family 6) JRI60_18120 PF00106 short chain dehydrogenase JRI60_18125 PF00301 Rubredoxin JRI60_18135 PF00675 Insulinase (Peptidase family M16) JRI60_18135 PF05193 Peptidase M16 inactive domain JRI60_18140 PF13426 PAS domain JRI60_18140 PF13188 PAS domain JRI60_18140 PF00989 PAS fold JRI60_18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_18140 PF00512 His Kinase A (phospho-acceptor) domain JRI60_18160 PF01435 Peptidase family M48 JRI60_18165 PF01070 FMN-dependent dehydrogenase JRI60_18170 PF00368 Hydroxymethylglutaryl-coenzyme A reductase JRI60_18195 PF00107 Zinc-binding dehydrogenase JRI60_18195 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_18200 PF00248 Aldo/keto reductase family JRI60_18250 PF13677 Membrane MotB of proton-channel complex MotA/MotB JRI60_18250 PF00691 OmpA family JRI60_18255 PF01618 MotA/TolQ/ExbB proton channel family JRI60_18285 PF03466 LysR substrate binding domain JRI60_18285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_18300 PF00106 short chain dehydrogenase JRI60_18315 PF13286 Phosphohydrolase-associated domain JRI60_18315 PF01966 HD domain JRI60_18320 PF00857 Isochorismatase family JRI60_18330 PF00067 Cytochrome P450 JRI60_18340 PF00440 Bacterial regulatory proteins, tetR family JRI60_18340 PF08359 YsiA-like protein, C-terminal region JRI60_18345 PF00067 Cytochrome P450 JRI60_18350 PF13426 PAS domain JRI60_18350 PF00512 His Kinase A (phospho-acceptor) domain JRI60_18350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_18350 PF00672 HAMP domain JRI60_18375 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_18380 PF00012 Hsp70 protein JRI60_18385 PF07743 HSCB C-terminal oligomerisation domain JRI60_18390 PF01521 Iron-sulphur cluster biosynthesis JRI60_18395 PF01592 NifU-like N terminal domain JRI60_18400 PF00266 Aminotransferase class-V JRI60_18420 PF01769 Divalent cation transporter JRI60_18420 PF03448 MgtE intracellular N domain JRI60_18420 PF00571 CBS domain JRI60_18470 PF07690 Major Facilitator Superfamily JRI60_18475 PF02683 Cytochrome C biogenesis protein transmembrane region JRI60_18475 PF11412 Disulphide bond corrector protein DsbC JRI60_18495 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_18500 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_18505 PF01547 Bacterial extracellular solute-binding protein JRI60_18540 PF01554 MatE JRI60_18545 PF00158 Sigma-54 interaction domain JRI60_18545 PF06956 Regulator of RNA terminal phosphate cyclase JRI60_18550 PF01139 tRNA-splicing ligase RtcB JRI60_18555 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain JRI60_18555 PF01137 RNA 3'-terminal phosphate cyclase JRI60_18570 PF01584 CheW-like domain JRI60_18570 PF00072 Response regulator receiver domain JRI60_18575 PF01709 Transcriptional regulator JRI60_18580 PF02075 Crossover junction endodeoxyribonuclease RuvC JRI60_18585 PF01330 RuvA N terminal domain JRI60_18585 PF07499 RuvA, C-terminal domain JRI60_18595 PF08443 RimK-like ATP-grasp domain JRI60_18595 PF18030 RimK PreATP-grasp domain JRI60_18610 PF00999 Sodium/hydrogen exchanger family JRI60_18615 PF00999 Sodium/hydrogen exchanger family JRI60_18650 PF00107 Zinc-binding dehydrogenase JRI60_18650 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_18655 PF17864 RuvB AAA lid domain JRI60_18655 PF05496 Holliday junction DNA helicase RuvB P-loop domain JRI60_18655 PF05491 RuvB C-terminal winged helix domain JRI60_18665 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JRI60_18670 PF06965 Na+/H+ antiporter 1 JRI60_18670 PF13462 Thioredoxin JRI60_18680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JRI60_18690 PF02789 Cytosol aminopeptidase family, N-terminal domain JRI60_18690 PF00883 Cytosol aminopeptidase family, catalytic domain JRI60_18700 PF01925 Sulfite exporter TauE/SafE JRI60_18725 PF01381 Helix-turn-helix JRI60_18725 PF06114 IrrE N-terminal-like domain JRI60_18725 PF09856 Predicted transcriptional regulator (DUF2083) JRI60_18740 PF05114 Protein of unknown function (DUF692) JRI60_18770 PF08281 Sigma-70, region 4 JRI60_18770 PF04542 Sigma-70 region 2 JRI60_18775 PF00266 Aminotransferase class-V JRI60_18785 PF01431 Peptidase family M13 JRI60_18785 PF05649 Peptidase family M13 JRI60_18795 PF04055 Radical SAM superfamily JRI60_18830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JRI60_18835 PF05175 Methyltransferase small domain JRI60_18835 PF17827 PrmC N-terminal domain JRI60_18840 PF00472 RF-1 domain JRI60_18840 PF03462 PCRF domain JRI60_18850 PF00571 CBS domain JRI60_18850 PF03471 Transporter associated domain JRI60_18850 PF01595 Cyclin M transmembrane N-terminal domain JRI60_18870 PF00512 His Kinase A (phospho-acceptor) domain JRI60_18870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_18880 PF00356 Bacterial regulatory proteins, lacI family JRI60_18895 PF00107 Zinc-binding dehydrogenase JRI60_18895 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_18900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_18900 PF03466 LysR substrate binding domain JRI60_18910 PF06470 SMC proteins Flexible Hinge Domain JRI60_18910 PF02463 RecF/RecN/SMC N terminal domain JRI60_18925 PF00158 Sigma-54 interaction domain JRI60_18925 PF06506 Propionate catabolism activator JRI60_18925 PF02954 Bacterial regulatory protein, Fis family JRI60_18935 PF00462 Glutaredoxin JRI60_18940 PF00118 TCP-1/cpn60 chaperonin family JRI60_18945 PF00166 Chaperonin 10 Kd subunit JRI60_18960 PF00293 NUDIX domain JRI60_18965 PF01192 RNA polymerase Rpb6 JRI60_18970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_18970 PF02743 Cache domain JRI60_18970 PF00512 His Kinase A (phospho-acceptor) domain JRI60_18975 PF10086 YhfC intramembrane metalloprotease JRI60_18980 PF00795 Carbon-nitrogen hydrolase JRI60_18985 PF14525 AraC-binding-like domain JRI60_18990 PF13458 Periplasmic binding protein JRI60_18995 PF00083 Sugar (and other) transporter JRI60_19015 PF08281 Sigma-70, region 4 JRI60_19015 PF04542 Sigma-70 region 2 JRI60_19050 PF00005 ABC transporter JRI60_19055 PF01842 ACT domain JRI60_19055 PF13840 ACT domain JRI60_19055 PF00696 Amino acid kinase family JRI60_19090 PF00498 FHA domain JRI60_19135 PF02978 Signal peptide binding domain JRI60_19135 PF02881 SRP54-type protein, helical bundle domain JRI60_19135 PF00448 SRP54-type protein, GTPase domain JRI60_19145 PF00550 Phosphopantetheine attachment site JRI60_19145 PF00668 Condensation domain JRI60_19145 PF13193 AMP-binding enzyme C-terminal domain JRI60_19145 PF00501 AMP-binding enzyme JRI60_19150 PF00550 Phosphopantetheine attachment site JRI60_19150 PF00501 AMP-binding enzyme JRI60_19150 PF07993 Male sterility protein JRI60_19150 PF13193 AMP-binding enzyme C-terminal domain JRI60_19150 PF00668 Condensation domain JRI60_19155 PF00326 Prolyl oligopeptidase family JRI60_19165 PF00501 AMP-binding enzyme JRI60_19175 PF00535 Glycosyl transferase family 2 JRI60_19190 PF13193 AMP-binding enzyme C-terminal domain JRI60_19190 PF07993 Male sterility protein JRI60_19190 PF00668 Condensation domain JRI60_19190 PF00501 AMP-binding enzyme JRI60_19190 PF00550 Phosphopantetheine attachment site JRI60_19200 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_19200 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_19200 PF00698 Acyl transferase domain JRI60_19200 PF00550 Phosphopantetheine attachment site JRI60_19200 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_19200 PF00668 Condensation domain JRI60_19220 PF00550 Phosphopantetheine attachment site JRI60_19220 PF00668 Condensation domain JRI60_19220 PF13193 AMP-binding enzyme C-terminal domain JRI60_19220 PF00501 AMP-binding enzyme JRI60_19220 PF07993 Male sterility protein JRI60_19225 PF00221 Aromatic amino acid lyase JRI60_19230 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_19230 PF00698 Acyl transferase domain JRI60_19230 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_19230 PF00550 Phosphopantetheine attachment site JRI60_19230 PF00668 Condensation domain JRI60_19230 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_19305 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JRI60_19335 PF00668 Condensation domain JRI60_19335 PF00501 AMP-binding enzyme JRI60_19335 PF00550 Phosphopantetheine attachment site JRI60_19335 PF13193 AMP-binding enzyme C-terminal domain JRI60_19365 PF00067 Cytochrome P450 JRI60_19370 PF12706 Beta-lactamase superfamily domain JRI60_19370 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain JRI60_19375 PF00550 Phosphopantetheine attachment site JRI60_19375 PF00668 Condensation domain JRI60_19375 PF00501 AMP-binding enzyme JRI60_19375 PF13193 AMP-binding enzyme C-terminal domain JRI60_19380 PF00550 Phosphopantetheine attachment site JRI60_19380 PF13193 AMP-binding enzyme C-terminal domain JRI60_19380 PF00501 AMP-binding enzyme JRI60_19380 PF00668 Condensation domain JRI60_19395 PF04389 Peptidase family M28 JRI60_19405 PF01595 Cyclin M transmembrane N-terminal domain JRI60_19405 PF00571 CBS domain JRI60_19405 PF03471 Transporter associated domain JRI60_19410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_19410 PF00672 HAMP domain JRI60_19410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_19410 PF00512 His Kinase A (phospho-acceptor) domain JRI60_19410 PF01627 Hpt domain JRI60_19410 PF00072 Response regulator receiver domain JRI60_19415 PF00149 Calcineurin-like phosphoesterase JRI60_19425 PF01895 PhoU domain JRI60_19430 PF00005 ABC transporter JRI60_19435 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_19440 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_19445 PF12849 PBP superfamily domain JRI60_19455 PF00486 Transcriptional regulatory protein, C terminal JRI60_19455 PF00072 Response regulator receiver domain JRI60_19460 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_19475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_19475 PF16736 Single Cache-like JRI60_19475 PF00989 PAS fold JRI60_19475 PF00512 His Kinase A (phospho-acceptor) domain JRI60_19480 PF00072 Response regulator receiver domain JRI60_19480 PF00486 Transcriptional regulatory protein, C terminal JRI60_19500 PF00924 Mechanosensitive ion channel JRI60_19500 PF05552 Conserved TM helix JRI60_19505 PF00723 Glycosyl hydrolases family 15 JRI60_19510 PF01783 Ribosomal L32p protein family JRI60_19515 PF02504 Fatty acid synthesis protein JRI60_19520 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_19520 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_19525 PF00698 Acyl transferase domain JRI60_19535 PF00550 Phosphopantetheine attachment site JRI60_19540 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_19540 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_19545 PF02502 Ribose/Galactose Isomerase JRI60_19550 PF00464 Serine hydroxymethyltransferase JRI60_19555 PF03477 ATP cone domain JRI60_19560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JRI60_19560 PF01872 RibD C-terminal domain JRI60_19595 PF00067 Cytochrome P450 JRI60_19605 PF00691 OmpA family JRI60_19605 PF13488 Glycine zipper JRI60_19610 PF12697 Alpha/beta hydrolase family JRI60_19620 PF12697 Alpha/beta hydrolase family JRI60_19655 PF00677 Lumazine binding domain JRI60_19660 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JRI60_19660 PF00925 GTP cyclohydrolase II JRI60_19665 PF00885 6,7-dimethyl-8-ribityllumazine synthase JRI60_19670 PF01029 NusB family JRI60_19680 PF00072 Response regulator receiver domain JRI60_19685 PF00072 Response regulator receiver domain JRI60_19685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_19685 PF01584 CheW-like domain JRI60_19685 PF01627 Hpt domain JRI60_19685 PF01627 Hpt domain JRI60_19685 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_19685 PF01584 CheW-like domain JRI60_19685 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_19685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_19685 PF00072 Response regulator receiver domain JRI60_19690 PF01584 CheW-like domain JRI60_19695 PF01584 CheW-like domain JRI60_19705 PF01739 CheR methyltransferase, SAM binding domain JRI60_19705 PF03705 CheR methyltransferase, all-alpha domain JRI60_19710 PF00072 Response regulator receiver domain JRI60_19710 PF01339 CheB methylesterase JRI60_19720 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_19725 PF00072 Response regulator receiver domain JRI60_19730 PF00248 Aldo/keto reductase family JRI60_19735 PF03942 DTW domain JRI60_19760 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JRI60_19760 PF06827 Zinc finger found in FPG and IleRS JRI60_19760 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JRI60_19770 PF00072 Response regulator receiver domain JRI60_19775 PF09334 tRNA synthetases class I (M) JRI60_19775 PF13603 Leucyl-tRNA synthetase, Domain 2 JRI60_19775 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_19775 PF08264 Anticodon-binding domain of tRNA JRI60_19790 PF01649 Ribosomal protein S20 JRI60_19795 PF03819 MazG nucleotide pyrophosphohydrolase domain JRI60_19805 PF01978 Sugar-specific transcriptional regulator TrmB JRI60_19805 PF14332 Domain of unknown function (DUF4388) JRI60_19810 PF02562 PhoH-like protein JRI60_19815 PF07697 7TM-HD extracellular JRI60_19815 PF01966 HD domain JRI60_19815 PF07698 7TM receptor with intracellular HD hydrolase JRI60_19820 PF07883 Cupin domain JRI60_19820 PF02130 Uncharacterized protein family UPF0054 JRI60_19835 PF01047 MarR family JRI60_19850 PF06580 Histidine kinase JRI60_19850 PF07694 5TMR of 5TMR-LYT JRI60_19855 PF00072 Response regulator receiver domain JRI60_19855 PF04397 LytTr DNA-binding domain JRI60_19870 PF04542 Sigma-70 region 2 JRI60_19870 PF08281 Sigma-70, region 4 JRI60_19885 PF00152 tRNA synthetases class II (D, K and N) JRI60_19885 PF01336 OB-fold nucleic acid binding domain JRI60_19890 PF02687 FtsX-like permease family JRI60_19890 PF12704 MacB-like periplasmic core domain JRI60_19895 PF00005 ABC transporter JRI60_19900 PF01103 Surface antigen JRI60_19900 PF07244 Surface antigen variable number repeat JRI60_19910 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JRI60_19910 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_19915 PF07977 FabA-like domain JRI60_19920 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_19920 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JRI60_19940 PF01914 MarC family integral membrane protein JRI60_19945 PF00535 Glycosyl transferase family 2 JRI60_19950 PF02684 Lipid-A-disaccharide synthetase JRI60_19965 PF00583 Acetyltransferase (GNAT) family JRI60_19975 PF00664 ABC transporter transmembrane region JRI60_19975 PF00005 ABC transporter JRI60_19985 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_19985 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_19985 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_19985 PF03413 Peptidase propeptide and YPEB domain JRI60_19985 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_19990 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JRI60_20000 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JRI60_20005 PF00294 pfkB family carbohydrate kinase JRI60_20005 PF01467 Cytidylyltransferase-like JRI60_20010 PF01467 Cytidylyltransferase-like JRI60_20010 PF00294 pfkB family carbohydrate kinase JRI60_20015 PF03966 Trm112p-like protein JRI60_20025 PF03755 YicC-like family, N-terminal region JRI60_20025 PF08340 Domain of unknown function (DUF1732) JRI60_20030 PF00625 Guanylate kinase JRI60_20060 PF00069 Protein kinase domain JRI60_20065 PF12544 Lysine-2,3-aminomutase JRI60_20065 PF04055 Radical SAM superfamily JRI60_20070 PF12544 Lysine-2,3-aminomutase JRI60_20070 PF04055 Radical SAM superfamily JRI60_20090 PF08486 Stage II sporulation protein JRI60_20095 PF02547 Queuosine biosynthesis protein JRI60_20100 PF01702 Queuine tRNA-ribosyltransferase JRI60_20105 PF02699 Preprotein translocase subunit JRI60_20110 PF02355 Protein export membrane protein JRI60_20110 PF07549 SecD/SecF GG Motif JRI60_20115 PF02355 Protein export membrane protein JRI60_20115 PF07549 SecD/SecF GG Motif JRI60_20125 PF02272 DHHA1 domain JRI60_20125 PF01368 DHH family JRI60_20125 PF17768 RecJ OB domain JRI60_20125 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JRI60_20145 PF02938 GAD domain JRI60_20145 PF01336 OB-fold nucleic acid binding domain JRI60_20145 PF00152 tRNA synthetases class II (D, K and N) JRI60_20150 PF00781 Diacylglycerol kinase catalytic domain JRI60_20165 PF01713 Smr domain JRI60_20165 PF00488 MutS domain V JRI60_20170 PF00176 SNF2 family N-terminal domain JRI60_20170 PF00271 Helicase conserved C-terminal domain JRI60_20190 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_20190 PF17863 AAA lid domain JRI60_20200 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JRI60_20205 PF00072 Response regulator receiver domain JRI60_20205 PF01966 HD domain JRI60_20210 PF01113 Dihydrodipicolinate reductase, N-terminus JRI60_20215 PF13452 N-terminal half of MaoC dehydratase JRI60_20225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_20225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_20225 PF12806 Acetyl-CoA dehydrogenase C-terminal like JRI60_20225 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_20235 PF01618 MotA/TolQ/ExbB proton channel family JRI60_20255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JRI60_20255 PF00005 ABC transporter JRI60_20260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JRI60_20260 PF00005 ABC transporter JRI60_20270 PF04545 Sigma-70, region 4 JRI60_20270 PF04542 Sigma-70 region 2 JRI60_20330 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_20340 PF13742 OB-fold nucleic acid binding domain JRI60_20340 PF02601 Exonuclease VII, large subunit JRI60_20350 PF00486 Transcriptional regulatory protein, C terminal JRI60_20350 PF00072 Response regulator receiver domain JRI60_20355 PF00348 Polyprenyl synthetase JRI60_20360 PF02779 Transketolase, pyrimidine binding domain JRI60_20360 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JRI60_20360 PF02780 Transketolase, C-terminal domain JRI60_20365 PF01479 S4 domain JRI60_20365 PF01728 FtsJ-like methyltransferase JRI60_20385 PF00069 Protein kinase domain JRI60_20385 PF07238 PilZ domain JRI60_20400 PF03551 Transcriptional regulator PadR-like family JRI60_20400 PF10400 Virulence activator alpha C-term JRI60_20405 PF00795 Carbon-nitrogen hydrolase JRI60_20415 PF03793 PASTA domain JRI60_20415 PF00069 Protein kinase domain JRI60_20430 PF00723 Glycosyl hydrolases family 15 JRI60_20440 PF00392 Bacterial regulatory proteins, gntR family JRI60_20440 PF00155 Aminotransferase class I and II JRI60_20450 PF01209 ubiE/COQ5 methyltransferase family JRI60_20485 PF00512 His Kinase A (phospho-acceptor) domain JRI60_20485 PF00072 Response regulator receiver domain JRI60_20485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_20485 PF08448 PAS fold JRI60_20485 PF13426 PAS domain JRI60_20525 PF07715 TonB-dependent Receptor Plug Domain JRI60_20525 PF00593 TonB dependent receptor JRI60_20555 PF03466 LysR substrate binding domain JRI60_20555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_20565 PF00069 Protein kinase domain JRI60_20565 PF03793 PASTA domain JRI60_20570 PF03466 LysR substrate binding domain JRI60_20570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_20575 PF07690 Major Facilitator Superfamily JRI60_20610 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_20625 PF00305 Lipoxygenase JRI60_20640 PF00672 HAMP domain JRI60_20640 PF18698 Histidine kinase sensor domain JRI60_20640 PF00512 His Kinase A (phospho-acceptor) domain JRI60_20640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_20680 PF12146 Serine aminopeptidase, S33 JRI60_20700 PF05736 OprF membrane domain JRI60_20700 PF00691 OmpA family JRI60_20705 PF00072 Response regulator receiver domain JRI60_20705 PF00512 His Kinase A (phospho-acceptor) domain JRI60_20705 PF08448 PAS fold JRI60_20705 PF13426 PAS domain JRI60_20705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_20740 PF00156 Phosphoribosyl transferase domain JRI60_20750 PF03641 Possible lysine decarboxylase JRI60_20755 PF01694 Rhomboid family JRI60_20755 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JRI60_20760 PF02910 Fumarate reductase flavoprotein C-term JRI60_20760 PF00890 FAD binding domain JRI60_20765 PF01464 Transglycosylase SLT domain JRI60_20775 PF01066 CDP-alcohol phosphatidyltransferase JRI60_20790 PF01061 ABC-2 type transporter JRI60_20795 PF14524 Wzt C-terminal domain JRI60_20795 PF00005 ABC transporter JRI60_20830 PF16363 GDP-mannose 4,6 dehydratase JRI60_20835 PF04321 RmlD substrate binding domain JRI60_20845 PF00534 Glycosyl transferases group 1 JRI60_20845 PF13439 Glycosyltransferase Family 4 JRI60_20850 PF16363 GDP-mannose 4,6 dehydratase JRI60_20855 PF00483 Nucleotidyl transferase JRI60_20860 PF01370 NAD dependent epimerase/dehydratase family JRI60_20865 PF00483 Nucleotidyl transferase JRI60_20870 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JRI60_20880 PF03631 Virulence factor BrkB JRI60_20885 PF12848 ABC transporter JRI60_20885 PF00005 ABC transporter JRI60_20915 PF03793 PASTA domain JRI60_20915 PF00069 Protein kinase domain JRI60_20940 PF01702 Queuine tRNA-ribosyltransferase JRI60_20965 PF01040 UbiA prenyltransferase family JRI60_20975 PF00311 Phosphoenolpyruvate carboxylase JRI60_20985 PF06155 Protein of unknown function (DUF971) JRI60_20985 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JRI60_21005 PF02779 Transketolase, pyrimidine binding domain JRI60_21005 PF02780 Transketolase, C-terminal domain JRI60_21010 PF00676 Dehydrogenase E1 component JRI60_21015 PF00672 HAMP domain JRI60_21015 PF07228 Stage II sporulation protein E (SpoIIE) JRI60_21030 PF00593 TonB dependent receptor JRI60_21030 PF07715 TonB-dependent Receptor Plug Domain JRI60_21040 PF00069 Protein kinase domain JRI60_21060 PF01266 FAD dependent oxidoreductase JRI60_21080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_21085 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_21085 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JRI60_21100 PF04116 Fatty acid hydroxylase superfamily JRI60_21105 PF00440 Bacterial regulatory proteins, tetR family JRI60_21115 PF00005 ABC transporter JRI60_21115 PF00664 ABC transporter transmembrane region JRI60_21120 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_21120 PF00501 AMP-binding enzyme JRI60_21120 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_21120 PF13193 AMP-binding enzyme C-terminal domain JRI60_21120 PF00668 Condensation domain JRI60_21120 PF00202 Aminotransferase class-III JRI60_21120 PF00550 Phosphopantetheine attachment site JRI60_21120 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_21125 PF03781 Sulfatase-modifying factor enzyme 1 JRI60_21125 PF12867 DinB superfamily JRI60_21130 PF01872 RibD C-terminal domain JRI60_21130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JRI60_21140 PF00925 GTP cyclohydrolase II JRI60_21145 PF00069 Protein kinase domain JRI60_21170 PF00012 Hsp70 protein JRI60_21230 PF00665 Integrase core domain JRI60_21240 PF00665 Integrase core domain JRI60_21245 PF01695 IstB-like ATP binding protein JRI60_21275 PF01695 IstB-like ATP binding protein JRI60_21280 PF00665 Integrase core domain JRI60_21285 PF01695 IstB-like ATP binding protein JRI60_21290 PF00665 Integrase core domain JRI60_21330 PF00072 Response regulator receiver domain JRI60_21335 PF00118 TCP-1/cpn60 chaperonin family JRI60_21340 PF00512 His Kinase A (phospho-acceptor) domain JRI60_21340 PF00989 PAS fold JRI60_21340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_21340 PF00072 Response regulator receiver domain JRI60_21340 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_21340 PF01627 Hpt domain JRI60_21350 PF00990 Diguanylate cyclase, GGDEF domain JRI60_21360 PF00072 Response regulator receiver domain JRI60_21360 PF00486 Transcriptional regulatory protein, C terminal JRI60_21365 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_21365 PF10458 Valyl tRNA synthetase tRNA binding arm JRI60_21365 PF08264 Anticodon-binding domain of tRNA JRI60_21370 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JRI60_21370 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JRI60_21375 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase JRI60_21380 PF03061 Thioesterase superfamily JRI60_21385 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JRI60_21400 PF03747 ADP-ribosylglycohydrolase JRI60_21405 PF00113 Enolase, C-terminal TIM barrel domain JRI60_21405 PF03952 Enolase, N-terminal domain JRI60_21410 PF01975 Survival protein SurE JRI60_21415 PF01551 Peptidase family M23 JRI60_21415 PF08525 Opacity-associated protein A N-terminal motif JRI60_21415 PF01476 LysM domain JRI60_21430 PF01726 LexA DNA binding domain JRI60_21430 PF00717 Peptidase S24-like JRI60_21435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_21435 PF13426 PAS domain JRI60_21435 PF00672 HAMP domain JRI60_21435 PF00512 His Kinase A (phospho-acceptor) domain JRI60_21440 PF00512 His Kinase A (phospho-acceptor) domain JRI60_21440 PF08448 PAS fold JRI60_21440 PF13188 PAS domain JRI60_21440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_21440 PF00072 Response regulator receiver domain JRI60_21485 PF13632 Glycosyl transferase family group 2 JRI60_21485 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JRI60_21495 PF08447 PAS fold JRI60_21495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_21495 PF08448 PAS fold JRI60_21535 PF03055 Retinal pigment epithelial membrane protein JRI60_21555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_21555 PF03466 LysR substrate binding domain JRI60_21595 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JRI60_21595 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JRI60_21620 PF00069 Protein kinase domain JRI60_21620 PF08308 PEGA domain JRI60_21625 PF17820 PDZ domain JRI60_21625 PF13180 PDZ domain JRI60_21630 PF00486 Transcriptional regulatory protein, C terminal JRI60_21630 PF00072 Response regulator receiver domain JRI60_21635 PF00491 Arginase family JRI60_21640 PF14765 Polyketide synthase dehydratase JRI60_21640 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_21640 PF00550 Phosphopantetheine attachment site JRI60_21640 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_21640 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_21640 PF08659 KR domain JRI60_21640 PF00698 Acyl transferase domain JRI60_21640 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_21645 PF03448 MgtE intracellular N domain JRI60_21645 PF00571 CBS domain JRI60_21645 PF01769 Divalent cation transporter JRI60_21650 PF03884 DNA gyrase inhibitor YacG JRI60_21670 PF01169 Uncharacterized protein family UPF0016 JRI60_21675 PF18698 Histidine kinase sensor domain JRI60_21675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_21675 PF00672 HAMP domain JRI60_21675 PF00989 PAS fold JRI60_21675 PF00512 His Kinase A (phospho-acceptor) domain JRI60_21740 PF02441 Flavoprotein JRI60_21740 PF04127 DNA / pantothenate metabolism flavoprotein JRI60_21745 PF13677 Membrane MotB of proton-channel complex MotA/MotB JRI60_21745 PF00691 OmpA family JRI60_21755 PF03167 Uracil DNA glycosylase superfamily JRI60_21770 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit JRI60_21780 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase JRI60_21780 PF02310 B12 binding domain JRI60_21785 PF03061 Thioesterase superfamily JRI60_21790 PF05853 beta-keto acid cleavage enzyme JRI60_21800 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JRI60_21810 PF00230 Major intrinsic protein JRI60_21815 PF01425 Amidase JRI60_21825 PF00149 Calcineurin-like phosphoesterase JRI60_21825 PF02872 5'-nucleotidase, C-terminal domain JRI60_21835 PF07690 Major Facilitator Superfamily JRI60_21845 PF03781 Sulfatase-modifying factor enzyme 1 JRI60_21855 PF00561 alpha/beta hydrolase fold JRI60_21860 PF08241 Methyltransferase domain JRI60_21885 PF13536 Putative multidrug resistance efflux transporter JRI60_21895 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase JRI60_21900 PF00067 Cytochrome P450 JRI60_21910 PF00691 OmpA family JRI60_21910 PF05736 OprF membrane domain JRI60_21925 PF07690 Major Facilitator Superfamily JRI60_21930 PF00550 Phosphopantetheine attachment site JRI60_21930 PF00975 Thioesterase domain JRI60_21930 PF13193 AMP-binding enzyme C-terminal domain JRI60_21930 PF00501 AMP-binding enzyme JRI60_21930 PF00668 Condensation domain JRI60_21940 PF01817 Chorismate mutase type II JRI60_21940 PF00800 Prephenate dehydratase JRI60_21945 PF01757 Acyltransferase family JRI60_21955 PF00313 'Cold-shock' DNA-binding domain JRI60_21970 PF08000 Bacterial PH domain JRI60_21970 PF11724 YvbH-like oligomerisation region JRI60_21980 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_21980 PF00107 Zinc-binding dehydrogenase JRI60_21995 PF13382 Adenine deaminase C-terminal domain JRI60_21995 PF01979 Amidohydrolase family JRI60_22010 PF01739 CheR methyltransferase, SAM binding domain JRI60_22010 PF03705 CheR methyltransferase, all-alpha domain JRI60_22015 PF00672 HAMP domain JRI60_22015 PF16591 Helical bimodular sensor domain JRI60_22015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_22025 PF00067 Cytochrome P450 JRI60_22030 PF00106 short chain dehydrogenase JRI60_22040 PF00440 Bacterial regulatory proteins, tetR family JRI60_22040 PF16859 Tetracyclin repressor-like, C-terminal domain JRI60_22115 PF01039 Carboxyl transferase domain JRI60_22125 PF00107 Zinc-binding dehydrogenase JRI60_22125 PF13823 Alcohol dehydrogenase GroES-associated JRI60_22125 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_22145 PF07715 TonB-dependent Receptor Plug Domain JRI60_22145 PF00593 TonB dependent receptor JRI60_22165 PF01171 PP-loop family JRI60_22165 PF11734 TilS substrate C-terminal domain JRI60_22170 PF01434 Peptidase family M41 JRI60_22170 PF17862 AAA+ lid domain JRI60_22170 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_22170 PF06480 FtsH Extracellular JRI60_22175 PF00809 Pterin binding enzyme JRI60_22180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JRI60_22180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JRI60_22180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JRI60_22180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JRI60_22185 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JRI60_22190 PF01648 4'-phosphopantetheinyl transferase superfamily JRI60_22195 PF03853 YjeF-related protein N-terminus JRI60_22195 PF01256 Carbohydrate kinase JRI60_22200 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JRI60_22205 PF03423 Carbohydrate binding domain (family 25) JRI60_22205 PF03065 Glycosyl hydrolase family 57 JRI60_22205 PF00041 Fibronectin type III domain JRI60_22210 PF00990 Diguanylate cyclase, GGDEF domain JRI60_22210 PF00072 Response regulator receiver domain JRI60_22215 PF00512 His Kinase A (phospho-acceptor) domain JRI60_22215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_22215 PF00989 PAS fold JRI60_22225 PF01979 Amidohydrolase family JRI60_22230 PF17392 Urocanase C-terminal domain JRI60_22230 PF01175 Urocanase Rossmann-like domain JRI60_22230 PF17391 Urocanase N-terminal domain JRI60_22235 PF00764 Arginosuccinate synthase JRI60_22255 PF10996 Beta-Casp domain JRI60_22255 PF00753 Metallo-beta-lactamase superfamily JRI60_22255 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JRI60_22260 PF14245 Type IV pilin PilA JRI60_22260 PF07963 Prokaryotic N-terminal methylation motif JRI60_22275 PF08534 Redoxin JRI60_22280 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JRI60_22280 PF01578 Cytochrome C assembly protein JRI60_22285 PF03100 CcmE JRI60_22295 PF01578 Cytochrome C assembly protein JRI60_22305 PF00005 ABC transporter JRI60_22365 PF02913 FAD linked oxidases, C-terminal domain JRI60_22365 PF01565 FAD binding domain JRI60_22380 PF00529 HlyD membrane-fusion protein of T1SS JRI60_22380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_22385 PF00873 AcrB/AcrD/AcrF family JRI60_22445 PF00849 RNA pseudouridylate synthase JRI60_22455 PF01266 FAD dependent oxidoreductase JRI60_22460 PF03033 Glycosyltransferase family 28 N-terminal domain JRI60_22480 PF00939 Sodium:sulfate symporter transmembrane region JRI60_22485 PF00392 Bacterial regulatory proteins, gntR family JRI60_22485 PF00155 Aminotransferase class I and II JRI60_22495 PF01062 Bestrophin, RFP-TM, chloride channel JRI60_22500 PF01474 Class-II DAHP synthetase family JRI60_22515 PF01370 NAD dependent epimerase/dehydratase family JRI60_22535 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_22535 PF01799 [2Fe-2S] binding domain JRI60_22540 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_22585 PF00561 alpha/beta hydrolase fold JRI60_22590 PF01544 CorA-like Mg2+ transporter protein JRI60_22600 PF00375 Sodium:dicarboxylate symporter family JRI60_22605 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_22605 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_22605 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_22605 PF03413 Peptidase propeptide and YPEB domain JRI60_22615 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_22615 PF17785 PUA-like domain JRI60_22645 PF00082 Subtilase family JRI60_22675 PF01553 Acyltransferase JRI60_22680 PF03485 Arginyl tRNA synthetase N terminal domain JRI60_22680 PF00750 tRNA synthetases class I (R) JRI60_22680 PF05746 DALR anticodon binding domain JRI60_22685 PF00512 His Kinase A (phospho-acceptor) domain JRI60_22685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_22685 PF00989 PAS fold JRI60_22695 PF00226 DnaJ domain JRI60_22695 PF01556 DnaJ C terminal domain JRI60_22700 PF09312 SurA N-terminal domain JRI60_22710 PF00164 Ribosomal protein S12/S23 JRI60_22715 PF00177 Ribosomal protein S7p/S5e JRI60_22720 PF03144 Elongation factor Tu domain 2 JRI60_22720 PF00009 Elongation factor Tu GTP binding domain JRI60_22720 PF03764 Elongation factor G, domain IV JRI60_22720 PF14492 Elongation Factor G, domain II JRI60_22720 PF00679 Elongation factor G C-terminus JRI60_22725 PF03143 Elongation factor Tu C-terminal domain JRI60_22725 PF00009 Elongation factor Tu GTP binding domain JRI60_22725 PF03144 Elongation factor Tu domain 2 JRI60_22730 PF00338 Ribosomal protein S10p/S20e JRI60_22735 PF00573 Ribosomal protein L4/L1 family JRI60_22740 PF00276 Ribosomal protein L23 JRI60_22745 PF00181 Ribosomal Proteins L2, RNA binding domain JRI60_22745 PF03947 Ribosomal Proteins L2, C-terminal domain JRI60_22750 PF00203 Ribosomal protein S19 JRI60_22755 PF00237 Ribosomal protein L22p/L17e JRI60_22760 PF07650 KH domain JRI60_22760 PF00189 Ribosomal protein S3, C-terminal domain JRI60_22765 PF00252 Ribosomal protein L16p/L10e JRI60_22770 PF00831 Ribosomal L29 protein JRI60_22775 PF00366 Ribosomal protein S17 JRI60_22780 PF00238 Ribosomal protein L14p/L23e JRI60_22785 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JRI60_22790 PF00673 ribosomal L5P family C-terminus JRI60_22790 PF00281 Ribosomal protein L5 JRI60_22795 PF00253 Ribosomal protein S14p/S29e JRI60_22800 PF00410 Ribosomal protein S8 JRI60_22805 PF00347 Ribosomal protein L6 JRI60_22810 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JRI60_22815 PF00333 Ribosomal protein S5, N-terminal domain JRI60_22815 PF03719 Ribosomal protein S5, C-terminal domain JRI60_22820 PF00327 Ribosomal protein L30p/L7e JRI60_22825 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JRI60_22830 PF00344 SecY translocase JRI60_22835 PF05191 Adenylate kinase, active site lid JRI60_22840 PF01176 Translation initiation factor 1A / IF-1 JRI60_22845 PF00444 Ribosomal protein L36 JRI60_22850 PF00416 Ribosomal protein S13/S18 JRI60_22855 PF00411 Ribosomal protein S11 JRI60_22860 PF01479 S4 domain JRI60_22860 PF00163 Ribosomal protein S4/S9 N-terminal domain JRI60_22875 PF01196 Ribosomal protein L17 JRI60_22905 PF02954 Bacterial regulatory protein, Fis family JRI60_22905 PF00072 Response regulator receiver domain JRI60_22905 PF00158 Sigma-54 interaction domain JRI60_22910 PF00892 EamA-like transporter family JRI60_22915 PF04227 Indigoidine synthase A like protein JRI60_22920 PF00512 His Kinase A (phospho-acceptor) domain JRI60_22920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_22920 PF08446 PAS fold JRI60_22920 PF01590 GAF domain JRI60_22920 PF00360 Phytochrome region JRI60_22925 PF00512 His Kinase A (phospho-acceptor) domain JRI60_22925 PF08448 PAS fold JRI60_22925 PF13188 PAS domain JRI60_22925 PF00072 Response regulator receiver domain JRI60_22925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_22930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_22930 PF08448 PAS fold JRI60_22930 PF00072 Response regulator receiver domain JRI60_22930 PF00512 His Kinase A (phospho-acceptor) domain JRI60_22930 PF13188 PAS domain JRI60_22950 PF01464 Transglycosylase SLT domain JRI60_22950 PF14718 Soluble lytic murein transglycosylase L domain JRI60_22975 PF17158 Membrane-associated sensor, integral membrane domain JRI60_22975 PF00990 Diguanylate cyclase, GGDEF domain JRI60_22990 PF03527 RHS protein JRI60_22990 PF05593 RHS Repeat JRI60_23000 PF03050 Transposase IS66 family JRI60_23000 PF13007 Transposase C of IS166 homeodomain JRI60_23000 PF13005 zinc-finger binding domain of transposase IS66 JRI60_23000 PF13817 IS66 C-terminal element JRI60_23020 PF05593 RHS Repeat JRI60_23020 PF03527 RHS protein JRI60_23040 PF08676 MutL C terminal dimerisation domain JRI60_23040 PF01119 DNA mismatch repair protein, C-terminal domain JRI60_23045 PF00561 alpha/beta hydrolase fold JRI60_23075 PF00069 Protein kinase domain JRI60_23085 PF13302 Acetyltransferase (GNAT) domain JRI60_23090 PF10282 Lactonase, 7-bladed beta-propeller JRI60_23105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_23105 PF03466 LysR substrate binding domain JRI60_23110 PF00753 Metallo-beta-lactamase superfamily JRI60_23110 PF16123 Hydroxyacylglutathione hydrolase C-terminus JRI60_23120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_23120 PF00512 His Kinase A (phospho-acceptor) domain JRI60_23140 PF00672 HAMP domain JRI60_23140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_23140 PF00512 His Kinase A (phospho-acceptor) domain JRI60_23160 PF08281 Sigma-70, region 4 JRI60_23160 PF04542 Sigma-70 region 2 JRI60_23165 PF00561 alpha/beta hydrolase fold JRI60_23170 PF00376 MerR family regulatory protein JRI60_23170 PF09278 MerR, DNA binding JRI60_23175 PF01494 FAD binding domain JRI60_23185 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_23190 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_23190 PF03449 Transcription elongation factor, N-terminal JRI60_23195 PF00271 Helicase conserved C-terminal domain JRI60_23195 PF00270 DEAD/DEAH box helicase JRI60_23195 PF17191 RecG wedge domain JRI60_23210 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_23210 PF01483 Proprotein convertase P-domain JRI60_23210 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_23210 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_23215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_23215 PF00512 His Kinase A (phospho-acceptor) domain JRI60_23215 PF09308 LuxQ, periplasmic JRI60_23215 PF00072 Response regulator receiver domain JRI60_23220 PF01411 tRNA synthetases class II (A) JRI60_23220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JRI60_23220 PF02272 DHHA1 domain JRI60_23245 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_23255 PF02223 Thymidylate kinase JRI60_23260 PF02464 Competence-damaged protein JRI60_23260 PF18146 Damage-inducible protein CinA KH domain JRI60_23260 PF00994 Probable molybdopterin binding domain JRI60_23265 PF13545 Crp-like helix-turn-helix domain JRI60_23265 PF00027 Cyclic nucleotide-binding domain JRI60_23275 PF13520 Amino acid permease JRI60_23280 PF00152 tRNA synthetases class II (D, K and N) JRI60_23280 PF01336 OB-fold nucleic acid binding domain JRI60_23285 PF00378 Enoyl-CoA hydratase/isomerase JRI60_23295 PF14765 Polyketide synthase dehydratase JRI60_23295 PF08659 KR domain JRI60_23295 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_23295 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_23295 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_23295 PF00107 Zinc-binding dehydrogenase JRI60_23295 PF00550 Phosphopantetheine attachment site JRI60_23295 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_23295 PF00698 Acyl transferase domain JRI60_23350 PF08308 PEGA domain JRI60_23350 PF00069 Protein kinase domain JRI60_23365 PF01451 Low molecular weight phosphotyrosine protein phosphatase JRI60_23390 PF01494 FAD binding domain JRI60_23400 PF01557 Fumarylacetoacetate (FAA) hydrolase family JRI60_23415 PF03466 LysR substrate binding domain JRI60_23415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_23440 PF07690 Major Facilitator Superfamily JRI60_23460 PF01709 Transcriptional regulator JRI60_23465 PF00114 Pilin (bacterial filament) JRI60_23465 PF07963 Prokaryotic N-terminal methylation motif JRI60_23475 PF17941 Polyphosphate kinase C-terminal domain 1 JRI60_23475 PF13089 Polyphosphate kinase N-terminal domain JRI60_23475 PF02503 Polyphosphate kinase middle domain JRI60_23475 PF13090 Polyphosphate kinase C-terminal domain 2 JRI60_23495 PF00704 Glycosyl hydrolases family 18 JRI60_23495 PF00041 Fibronectin type III domain JRI60_23500 PF13407 Periplasmic binding protein domain JRI60_23505 PF00005 ABC transporter JRI60_23510 PF02653 Branched-chain amino acid transport system / permease component JRI60_23520 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_23520 PF00553 Cellulose binding domain JRI60_23525 PF08281 Sigma-70, region 4 JRI60_23525 PF04542 Sigma-70 region 2 JRI60_23530 PF00041 Fibronectin type III domain JRI60_23530 PF00704 Glycosyl hydrolases family 18 JRI60_23535 PF03173 Putative carbohydrate binding domain JRI60_23535 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JRI60_23535 PF00728 Glycosyl hydrolase family 20, catalytic domain JRI60_23535 PF02838 Glycosyl hydrolase family 20, domain 2 JRI60_23545 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JRI60_23545 PF00367 phosphotransferase system, EIIB JRI60_23545 PF02378 Phosphotransferase system, EIIC JRI60_23550 PF02896 PEP-utilising enzyme, TIM barrel domain JRI60_23550 PF00381 PTS HPr component phosphorylation site JRI60_23550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JRI60_23550 PF00391 PEP-utilising enzyme, mobile domain JRI60_23550 PF05524 PEP-utilising enzyme, N-terminal JRI60_23555 PF13580 SIS domain JRI60_23560 PF00392 Bacterial regulatory proteins, gntR family JRI60_23560 PF07702 UTRA domain JRI60_23565 PF01380 SIS domain JRI60_23570 PF01979 Amidohydrolase family JRI60_23575 PF02146 Sir2 family JRI60_23580 PF05368 NmrA-like family JRI60_23595 PF00067 Cytochrome P450 JRI60_23600 PF13291 ACT domain JRI60_23600 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_23610 PF02264 LamB porin JRI60_23615 PF01341 Glycosyl hydrolases family 6 JRI60_23620 PF00221 Aromatic amino acid lyase JRI60_23625 PF13840 ACT domain JRI60_23625 PF00696 Amino acid kinase family JRI60_23625 PF01842 ACT domain JRI60_23670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_23670 PF00672 HAMP domain JRI60_23670 PF00512 His Kinase A (phospho-acceptor) domain JRI60_23685 PF13361 UvrD-like helicase C-terminal domain JRI60_23685 PF00580 UvrD/REP helicase N-terminal domain JRI60_23690 PF00012 Hsp70 protein JRI60_23720 PF03741 Integral membrane protein TerC family JRI60_23725 PF01435 Peptidase family M48 JRI60_23735 PF00355 Rieske [2Fe-2S] domain JRI60_23755 PF00535 Glycosyl transferase family 2 JRI60_23765 PF01648 4'-phosphopantetheinyl transferase superfamily JRI60_23770 PF00975 Thioesterase domain JRI60_23775 PF00512 His Kinase A (phospho-acceptor) domain JRI60_23775 PF13188 PAS domain JRI60_23775 PF00072 Response regulator receiver domain JRI60_23775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_23775 PF08448 PAS fold JRI60_23780 PF03621 MbtH-like protein JRI60_23790 PF00975 Thioesterase domain JRI60_23790 PF00550 Phosphopantetheine attachment site JRI60_23790 PF00668 Condensation domain JRI60_23790 PF13193 AMP-binding enzyme C-terminal domain JRI60_23790 PF00501 AMP-binding enzyme JRI60_23795 PF00975 Thioesterase domain JRI60_23795 PF00550 Phosphopantetheine attachment site JRI60_23795 PF00668 Condensation domain JRI60_23795 PF00501 AMP-binding enzyme JRI60_23795 PF13193 AMP-binding enzyme C-terminal domain JRI60_23820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_23830 PF01476 LysM domain JRI60_23830 PF00877 NlpC/P60 family JRI60_23840 PF00698 Acyl transferase domain JRI60_23840 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_23840 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_23840 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_23840 PF00550 Phosphopantetheine attachment site JRI60_23840 PF14765 Polyketide synthase dehydratase JRI60_23840 PF08659 KR domain JRI60_23845 PF00501 AMP-binding enzyme JRI60_23845 PF13193 AMP-binding enzyme C-terminal domain JRI60_23845 PF00668 Condensation domain JRI60_23845 PF00550 Phosphopantetheine attachment site JRI60_23850 PF00550 Phosphopantetheine attachment site JRI60_23850 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_23850 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_23850 PF14765 Polyketide synthase dehydratase JRI60_23850 PF08659 KR domain JRI60_23850 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_23850 PF00698 Acyl transferase domain JRI60_23855 PF18369 Polyketide synthase dimerisation element domain JRI60_23855 PF00550 Phosphopantetheine attachment site JRI60_23855 PF00975 Thioesterase domain JRI60_23855 PF08659 KR domain JRI60_23855 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_23855 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_23855 PF08990 Erythronolide synthase docking JRI60_23855 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_23855 PF00698 Acyl transferase domain JRI60_23860 PF00698 Acyl transferase domain JRI60_23860 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_23860 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_23860 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_23860 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_23860 PF08659 KR domain JRI60_23860 PF00550 Phosphopantetheine attachment site JRI60_23860 PF14765 Polyketide synthase dehydratase JRI60_23865 PF00501 AMP-binding enzyme JRI60_23865 PF13193 AMP-binding enzyme C-terminal domain JRI60_23865 PF00668 Condensation domain JRI60_23865 PF00550 Phosphopantetheine attachment site JRI60_23865 PF00975 Thioesterase domain JRI60_23870 PF01557 Fumarylacetoacetate (FAA) hydrolase family JRI60_23880 PF00440 Bacterial regulatory proteins, tetR family JRI60_23885 PF00107 Zinc-binding dehydrogenase JRI60_23885 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_23920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_23920 PF00512 His Kinase A (phospho-acceptor) domain JRI60_23920 PF00989 PAS fold JRI60_23920 PF16736 Single Cache-like JRI60_23930 PF00743 Flavin-binding monooxygenase-like JRI60_23945 PF13735 tRNA nucleotidyltransferase domain 2 putative JRI60_23945 PF12627 Probable RNA and SrmB- binding site of polymerase A JRI60_23945 PF01743 Poly A polymerase head domain JRI60_23965 PF01238 Phosphomannose isomerase type I JRI60_23980 PF01370 NAD dependent epimerase/dehydratase family JRI60_23985 PF16363 GDP-mannose 4,6 dehydratase JRI60_23990 PF00679 Elongation factor G C-terminus JRI60_23990 PF00009 Elongation factor Tu GTP binding domain JRI60_23990 PF03144 Elongation factor Tu domain 2 JRI60_23990 PF06421 GTP-binding protein LepA C-terminus JRI60_23995 PF10502 Signal peptidase, peptidase S26 JRI60_24005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JRI60_24005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JRI60_24010 PF01979 Amidohydrolase family JRI60_24015 PF00117 Glutamine amidotransferase class-I JRI60_24015 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JRI60_24040 PF00067 Cytochrome P450 JRI60_24050 PF00183 Hsp90 protein JRI60_24055 PF17678 Glycosyl hydrolase family 92 N-terminal domain JRI60_24055 PF07971 Glycosyl hydrolase family 92 JRI60_24060 PF00144 Beta-lactamase JRI60_24065 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain JRI60_24065 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JRI60_24085 PF00210 Ferritin-like domain JRI60_24095 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal JRI60_24095 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal JRI60_24105 PF12697 Alpha/beta hydrolase family JRI60_24120 PF00069 Protein kinase domain JRI60_24145 PF12697 Alpha/beta hydrolase family JRI60_24155 PF18370 Rhamnogalacturonan I lyases beta-sheet domain JRI60_24160 PF12704 MacB-like periplasmic core domain JRI60_24160 PF02687 FtsX-like permease family JRI60_24160 PF00005 ABC transporter JRI60_24175 PF02687 FtsX-like permease family JRI60_24175 PF00005 ABC transporter JRI60_24175 PF12704 MacB-like periplasmic core domain JRI60_24180 PF02687 FtsX-like permease family JRI60_24180 PF12704 MacB-like periplasmic core domain JRI60_24180 PF00005 ABC transporter JRI60_24195 PF00512 His Kinase A (phospho-acceptor) domain JRI60_24195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_24200 PF00158 Sigma-54 interaction domain JRI60_24200 PF00072 Response regulator receiver domain JRI60_24200 PF02954 Bacterial regulatory protein, Fis family JRI60_24205 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_24205 PF00107 Zinc-binding dehydrogenase JRI60_24225 PF17874 MalT-like TPR region JRI60_24225 PF00196 Bacterial regulatory proteins, luxR family JRI60_24250 PF00156 Phosphoribosyl transferase domain JRI60_24250 PF05139 Erythromycin esterase JRI60_24285 PF01494 FAD binding domain JRI60_24290 PF02909 Tetracyclin repressor-like, C-terminal domain JRI60_24290 PF00440 Bacterial regulatory proteins, tetR family JRI60_24305 PF00224 Pyruvate kinase, barrel domain JRI60_24305 PF02887 Pyruvate kinase, alpha/beta domain JRI60_24305 PF00391 PEP-utilising enzyme, mobile domain JRI60_24315 PF00580 UvrD/REP helicase N-terminal domain JRI60_24315 PF13361 UvrD-like helicase C-terminal domain JRI60_24330 PF00501 AMP-binding enzyme JRI60_24335 PF00285 Citrate synthase, C-terminal domain JRI60_24340 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JRI60_24345 PF01761 3-dehydroquinate synthase JRI60_24350 PF01264 Chorismate synthase JRI60_24360 PF01202 Shikimate kinase JRI60_24360 PF01761 3-dehydroquinate synthase JRI60_24365 PF01209 ubiE/COQ5 methyltransferase family JRI60_24370 PF00793 DAHP synthetase I family JRI60_24370 PF18152 DAHP synthase ferredoxin-like domain JRI60_24375 PF00425 chorismate binding enzyme JRI60_24380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JRI60_24380 PF16582 Middle domain of thiamine pyrophosphate JRI60_24380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JRI60_24385 PF00561 alpha/beta hydrolase fold JRI60_24390 PF01040 UbiA prenyltransferase family JRI60_24395 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JRI60_24395 PF13378 Enolase C-terminal domain-like JRI60_24400 PF13193 AMP-binding enzyme C-terminal domain JRI60_24400 PF00501 AMP-binding enzyme JRI60_24410 PF00437 Type II/IV secretion system protein JRI60_24430 PF01522 Polysaccharide deacetylase JRI60_24440 PF00180 Isocitrate/isopropylmalate dehydrogenase JRI60_24445 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JRI60_24445 PF00056 lactate/malate dehydrogenase, NAD binding domain JRI60_24450 PF00890 FAD binding domain JRI60_24450 PF02910 Fumarate reductase flavoprotein C-term JRI60_24455 PF13085 2Fe-2S iron-sulfur cluster binding domain JRI60_24455 PF13183 4Fe-4S dicluster domain JRI60_24460 PF00549 CoA-ligase JRI60_24460 PF08442 ATP-grasp domain JRI60_24465 PF00549 CoA-ligase JRI60_24465 PF02629 CoA binding domain JRI60_24470 PF00334 Nucleoside diphosphate kinase JRI60_24510 PF00665 Integrase core domain JRI60_24520 PF14552 Tautomerase enzyme JRI60_24525 PF03466 LysR substrate binding domain JRI60_24525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_24530 PF07690 Major Facilitator Superfamily JRI60_24535 PF00067 Cytochrome P450 JRI60_24540 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_24545 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_24545 PF14759 Reductase C-terminal JRI60_24550 PF00440 Bacterial regulatory proteins, tetR family JRI60_24550 PF09209 Tetracyclin repressor-like, C-terminal domain JRI60_24560 PF00106 short chain dehydrogenase JRI60_24570 PF00743 Flavin-binding monooxygenase-like JRI60_24590 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_24590 PF13191 AAA ATPase domain JRI60_24600 PF04616 Glycosyl hydrolases family 43 JRI60_24605 PF01431 Peptidase family M13 JRI60_24605 PF05649 Peptidase family M13 JRI60_24620 PF12706 Beta-lactamase superfamily domain JRI60_24620 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain JRI60_24630 PF00005 ABC transporter JRI60_24630 PF00664 ABC transporter transmembrane region JRI60_24635 PF00501 AMP-binding enzyme JRI60_24635 PF00550 Phosphopantetheine attachment site JRI60_24635 PF00668 Condensation domain JRI60_24635 PF13193 AMP-binding enzyme C-terminal domain JRI60_24640 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_24640 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_24640 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_24640 PF00698 Acyl transferase domain JRI60_24640 PF00668 Condensation domain JRI60_24640 PF00550 Phosphopantetheine attachment site JRI60_24645 PF13193 AMP-binding enzyme C-terminal domain JRI60_24645 PF00550 Phosphopantetheine attachment site JRI60_24645 PF00668 Condensation domain JRI60_24645 PF00501 AMP-binding enzyme JRI60_24655 PF04101 Glycosyltransferase family 28 C-terminal domain JRI60_24665 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_24670 PF04055 Radical SAM superfamily JRI60_24675 PF00886 Ribosomal protein S16 JRI60_24685 PF01782 RimM N-terminal domain JRI60_24685 PF05239 PRC-barrel domain JRI60_24690 PF01746 tRNA (Guanine-1)-methyltransferase JRI60_24695 PF01245 Ribosomal protein L19 JRI60_24705 PF02021 Uncharacterised protein family UPF0102 JRI60_24710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_24720 PF08460 Bacterial SH3 domain JRI60_24720 PF01551 Peptidase family M23 JRI60_24725 PF00072 Response regulator receiver domain JRI60_24725 PF02954 Bacterial regulatory protein, Fis family JRI60_24725 PF00158 Sigma-54 interaction domain JRI60_24740 PF03023 Lipid II flippase MurJ JRI60_24745 PF00575 S1 RNA binding domain JRI60_24790 PF05491 RuvB C-terminal winged helix domain JRI60_24790 PF17864 RuvB AAA lid domain JRI60_24790 PF05496 Holliday junction DNA helicase RuvB P-loop domain JRI60_24805 PF11066 Protein of unknown function (DUF2867) JRI60_24805 PF13460 NAD(P)H-binding JRI60_24810 PF00487 Fatty acid desaturase JRI60_24815 PF00487 Fatty acid desaturase JRI60_24825 PF00512 His Kinase A (phospho-acceptor) domain JRI60_24825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_24845 PF00030 Beta/Gamma crystallin JRI60_24860 PF01547 Bacterial extracellular solute-binding protein JRI60_24895 PF05221 S-adenosyl-L-homocysteine hydrolase JRI60_24895 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JRI60_24900 PF07519 Tannase and feruloyl esterase JRI60_24915 PF03793 PASTA domain JRI60_24915 PF00069 Protein kinase domain JRI60_24935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_24935 PF00512 His Kinase A (phospho-acceptor) domain JRI60_24935 PF07689 KaiB domain JRI60_24945 PF00067 Cytochrome P450 JRI60_24950 PF00672 HAMP domain JRI60_24950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_24960 PF00067 Cytochrome P450 JRI60_24965 PF00512 His Kinase A (phospho-acceptor) domain JRI60_24965 PF00989 PAS fold JRI60_24965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_24970 PF12034 Domain of unknown function (DUF3520) JRI60_24970 PF00092 von Willebrand factor type A domain JRI60_24970 PF12450 von Willebrand factor JRI60_24985 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_24990 PF03851 UV-endonuclease UvdE JRI60_25000 PF00313 'Cold-shock' DNA-binding domain JRI60_25010 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JRI60_25010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_25030 PF01594 AI-2E family transporter JRI60_25035 PF03167 Uracil DNA glycosylase superfamily JRI60_25045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JRI60_25045 PF02824 TGS domain JRI60_25045 PF03129 Anticodon binding domain JRI60_25045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JRI60_25050 PF00707 Translation initiation factor IF-3, C-terminal domain JRI60_25050 PF05198 Translation initiation factor IF-3, N-terminal domain JRI60_25055 PF01632 Ribosomal protein L35 JRI60_25060 PF00453 Ribosomal protein L20 JRI60_25065 PF01409 tRNA synthetases class II core domain (F) JRI60_25065 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JRI60_25070 PF03483 B3/4 domain JRI60_25070 PF01588 Putative tRNA binding domain JRI60_25070 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JRI60_25070 PF03147 Ferredoxin-fold anticodon binding domain JRI60_25070 PF03484 tRNA synthetase B5 domain JRI60_25075 PF00216 Bacterial DNA-binding protein JRI60_25125 PF00520 Ion transport protein JRI60_25125 PF00027 Cyclic nucleotide-binding domain JRI60_25130 PF01183 Glycosyl hydrolases family 25 JRI60_25150 PF14659 Phage integrase, N-terminal SAM-like domain JRI60_25150 PF00589 Phage integrase family JRI60_25160 PF00069 Protein kinase domain JRI60_25160 PF03793 PASTA domain JRI60_25180 PF01695 IstB-like ATP binding protein JRI60_25185 PF00665 Integrase core domain JRI60_25190 PF01039 Carboxyl transferase domain JRI60_25205 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_25205 PF01799 [2Fe-2S] binding domain JRI60_25205 PF10518 TAT (twin-arginine translocation) pathway signal sequence JRI60_25210 PF03450 CO dehydrogenase flavoprotein C-terminal domain JRI60_25210 PF00941 FAD binding domain in molybdopterin dehydrogenase JRI60_25215 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_25215 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_25220 PF14521 Lysine-specific metallo-endopeptidase JRI60_25250 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_25255 PF00005 ABC transporter JRI60_25275 PF00440 Bacterial regulatory proteins, tetR family JRI60_25280 PF00005 ABC transporter JRI60_25305 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_25305 PF08264 Anticodon-binding domain of tRNA JRI60_25335 PF00437 Type II/IV secretion system protein JRI60_25360 PF04294 VanW like protein JRI60_25370 PF00348 Polyprenyl synthetase JRI60_25430 PF03466 LysR substrate binding domain JRI60_25430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_25435 PF02525 Flavodoxin-like fold JRI60_25440 PF03466 LysR substrate binding domain JRI60_25440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_25445 PF00171 Aldehyde dehydrogenase family JRI60_25450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_25450 PF03466 LysR substrate binding domain JRI60_25470 PF01627 Hpt domain JRI60_25470 PF00512 His Kinase A (phospho-acceptor) domain JRI60_25470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_25470 PF00672 HAMP domain JRI60_25470 PF17149 Periplasmic sensor domain found in signal transduction proteins JRI60_25470 PF00072 Response regulator receiver domain JRI60_25475 PF00465 Iron-containing alcohol dehydrogenase JRI60_25480 PF00440 Bacterial regulatory proteins, tetR family JRI60_25485 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JRI60_25485 PF00391 PEP-utilising enzyme, mobile domain JRI60_25495 PF01522 Polysaccharide deacetylase JRI60_25535 PF00999 Sodium/hydrogen exchanger family JRI60_25540 PF00067 Cytochrome P450 JRI60_25545 PF00067 Cytochrome P450 JRI60_25555 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JRI60_25555 PF00326 Prolyl oligopeptidase family JRI60_25570 PF00404 Dockerin type I domain JRI60_25570 PF00657 GDSL-like Lipase/Acylhydrolase JRI60_25575 PF03793 PASTA domain JRI60_25575 PF00069 Protein kinase domain JRI60_25595 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JRI60_25595 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JRI60_25595 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JRI60_25600 PF07690 Major Facilitator Superfamily JRI60_25610 PF00440 Bacterial regulatory proteins, tetR family JRI60_25610 PF16859 Tetracyclin repressor-like, C-terminal domain JRI60_25620 PF07715 TonB-dependent Receptor Plug Domain JRI60_25620 PF00593 TonB dependent receptor JRI60_25660 PF00270 DEAD/DEAH box helicase JRI60_25660 PF00271 Helicase conserved C-terminal domain JRI60_25665 PF02705 K+ potassium transporter JRI60_25690 PF00672 HAMP domain JRI60_25690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_25690 PF00512 His Kinase A (phospho-acceptor) domain JRI60_25690 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_25690 PF08448 PAS fold JRI60_25695 PF06745 KaiC JRI60_25700 PF00072 Response regulator receiver domain JRI60_25700 PF00486 Transcriptional regulatory protein, C terminal JRI60_25705 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JRI60_25710 PF00135 Carboxylesterase family JRI60_25715 PF00144 Beta-lactamase JRI60_25730 PF06628 Catalase-related immune-responsive JRI60_25730 PF00199 Catalase JRI60_25765 PF00576 HIUase/Transthyretin family JRI60_25775 PF03561 Allantoicase repeat JRI60_25780 PF01979 Amidohydrolase family JRI60_25785 PF13454 FAD-NAD(P)-binding JRI60_25790 PF00561 alpha/beta hydrolase fold JRI60_25800 PF07971 Glycosyl hydrolase family 92 JRI60_25800 PF17678 Glycosyl hydrolase family 92 N-terminal domain JRI60_25805 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_25805 PF01464 Transglycosylase SLT domain JRI60_25810 PF00005 ABC transporter JRI60_25820 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_25840 PF00999 Sodium/hydrogen exchanger family JRI60_25845 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_25850 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JRI60_25885 PF06165 Glycosyltransferase family 36 JRI60_25885 PF10091 Putative glucoamylase JRI60_25885 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JRI60_25890 PF00005 ABC transporter JRI60_25895 PF00128 Alpha amylase, catalytic domain JRI60_25900 PF12804 MobA-like NTP transferase domain JRI60_25905 PF13478 XdhC Rossmann domain JRI60_25905 PF02625 XdhC and CoxI family JRI60_25910 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_25910 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_25915 PF03450 CO dehydrogenase flavoprotein C-terminal domain JRI60_25915 PF00941 FAD binding domain in molybdopterin dehydrogenase JRI60_25920 PF10518 TAT (twin-arginine translocation) pathway signal sequence JRI60_25920 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_25920 PF01799 [2Fe-2S] binding domain JRI60_25930 PF00069 Protein kinase domain JRI60_25945 PF01494 FAD binding domain JRI60_25950 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_25955 PF08308 PEGA domain JRI60_25955 PF00069 Protein kinase domain JRI60_25965 PF08990 Erythronolide synthase docking JRI60_25965 PF00698 Acyl transferase domain JRI60_25965 PF00975 Thioesterase domain JRI60_25965 PF18369 Polyketide synthase dimerisation element domain JRI60_25965 PF08659 KR domain JRI60_25965 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_25965 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_25965 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_25965 PF00550 Phosphopantetheine attachment site JRI60_25970 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_25970 PF13191 AAA ATPase domain JRI60_25975 PF04030 D-arabinono-1,4-lactone oxidase JRI60_25975 PF01565 FAD binding domain JRI60_25985 PF00672 HAMP domain JRI60_25985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_25985 PF00512 His Kinase A (phospho-acceptor) domain JRI60_25990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_25990 PF02806 Alpha amylase, C-terminal all-beta domain JRI60_25990 PF00128 Alpha amylase, catalytic domain JRI60_25995 PF18085 Maltokinase N-terminal cap domain JRI60_26000 PF00128 Alpha amylase, catalytic domain JRI60_26000 PF16657 Maltogenic Amylase, C-terminal domain JRI60_26005 PF00128 Alpha amylase, catalytic domain JRI60_26005 PF11896 Domain of unknown function (DUF3416) JRI60_26050 PF01475 Ferric uptake regulator family JRI60_26055 PF00578 AhpC/TSA family JRI60_26065 PF00990 Diguanylate cyclase, GGDEF domain JRI60_26070 PF04445 Putative SAM-dependent methyltransferase JRI60_26090 PF03793 PASTA domain JRI60_26090 PF00069 Protein kinase domain JRI60_26095 PF00196 Bacterial regulatory proteins, luxR family JRI60_26095 PF00072 Response regulator receiver domain JRI60_26115 PF01204 Trehalase JRI60_26125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_26125 PF00512 His Kinase A (phospho-acceptor) domain JRI60_26125 PF13188 PAS domain JRI60_26125 PF00989 PAS fold JRI60_26125 PF13426 PAS domain JRI60_26130 PF00067 Cytochrome P450 JRI60_26135 PF05193 Peptidase M16 inactive domain JRI60_26135 PF00675 Insulinase (Peptidase family M16) JRI60_26145 PF00849 RNA pseudouridylate synthase JRI60_26155 PF12823 Domain of unknown function (DUF3817) JRI60_26170 PF00069 Protein kinase domain JRI60_26170 PF03793 PASTA domain JRI60_26175 PF00072 Response regulator receiver domain JRI60_26185 PF02163 Peptidase family M50 JRI60_26185 PF17820 PDZ domain JRI60_26205 PF02405 Permease MlaE JRI60_26210 PF00005 ABC transporter JRI60_26250 PF02666 Phosphatidylserine decarboxylase JRI60_26255 PF03129 Anticodon binding domain JRI60_26255 PF13393 Histidyl-tRNA synthetase JRI60_26305 PF00069 Protein kinase domain JRI60_26315 PF00106 short chain dehydrogenase JRI60_26320 PF00072 Response regulator receiver domain JRI60_26320 PF00486 Transcriptional regulatory protein, C terminal JRI60_26325 PF00990 Diguanylate cyclase, GGDEF domain JRI60_26325 PF00072 Response regulator receiver domain JRI60_26345 PF01029 NusB family JRI60_26345 PF01189 16S rRNA methyltransferase RsmB/F JRI60_26365 PF00348 Polyprenyl synthetase JRI60_26370 PF01791 DeoC/LacD family aldolase JRI60_26390 PF00155 Aminotransferase class I and II JRI60_26405 PF00155 Aminotransferase class I and II JRI60_26410 PF01642 Methylmalonyl-CoA mutase JRI60_26410 PF02310 B12 binding domain JRI60_26420 PF02310 B12 binding domain JRI60_26425 PF00682 HMGL-like JRI60_26430 PF01476 LysM domain JRI60_26430 PF08239 Bacterial SH3 domain JRI60_26430 PF00877 NlpC/P60 family JRI60_26440 PF00158 Sigma-54 interaction domain JRI60_26440 PF00072 Response regulator receiver domain JRI60_26440 PF02954 Bacterial regulatory protein, Fis family JRI60_26450 PF00069 Protein kinase domain JRI60_26460 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JRI60_26460 PF02637 GatB domain JRI60_26460 PF00749 tRNA synthetases class I (E and Q), catalytic domain JRI60_26465 PF07690 Major Facilitator Superfamily JRI60_26485 PF00501 AMP-binding enzyme JRI60_26485 PF01553 Acyltransferase JRI60_26485 PF13193 AMP-binding enzyme C-terminal domain JRI60_26495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JRI60_26495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JRI60_26500 PF01232 Mannitol dehydrogenase Rossmann domain JRI60_26500 PF08125 Mannitol dehydrogenase C-terminal domain JRI60_26505 PF00005 ABC transporter JRI60_26505 PF08402 TOBE domain JRI60_26510 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_26515 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_26525 PF00067 Cytochrome P450 JRI60_26530 PF00069 Protein kinase domain JRI60_26540 PF00484 Carbonic anhydrase JRI60_26555 PF00072 Response regulator receiver domain JRI60_26555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_26555 PF00512 His Kinase A (phospho-acceptor) domain JRI60_26555 PF09308 LuxQ, periplasmic JRI60_26560 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) JRI60_26575 PF00378 Enoyl-CoA hydratase/isomerase JRI60_26585 PF00144 Beta-lactamase JRI60_26590 PF12706 Beta-lactamase superfamily domain JRI60_26595 PF00005 ABC transporter JRI60_26635 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_26635 PF01799 [2Fe-2S] binding domain JRI60_26640 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_26640 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_26650 PF07859 alpha/beta hydrolase fold JRI60_26655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_26655 PF00512 His Kinase A (phospho-acceptor) domain JRI60_26655 PF00989 PAS fold JRI60_26670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_26670 PF03466 LysR substrate binding domain JRI60_26680 PF01494 FAD binding domain JRI60_26685 PF01938 TRAM domain JRI60_26685 PF05958 tRNA (Uracil-5-)-methyltransferase JRI60_26715 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_26715 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_26720 PF00067 Cytochrome P450 JRI60_26725 PF00067 Cytochrome P450 JRI60_26730 PF00440 Bacterial regulatory proteins, tetR family JRI60_26730 PF08359 YsiA-like protein, C-terminal region JRI60_26735 PF00561 alpha/beta hydrolase fold JRI60_26740 PF00561 alpha/beta hydrolase fold JRI60_26745 PF00082 Subtilase family JRI60_26745 PF05922 Peptidase inhibitor I9 JRI60_26750 PF00082 Subtilase family JRI60_26750 PF05922 Peptidase inhibitor I9 JRI60_26765 PF00704 Glycosyl hydrolases family 18 JRI60_26765 PF00041 Fibronectin type III domain JRI60_26795 PF01039 Carboxyl transferase domain JRI60_26800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_26800 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_26800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_26815 PF14622 Ribonuclease-III-like JRI60_26815 PF00035 Double-stranded RNA binding motif JRI60_26820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JRI60_26825 PF01926 50S ribosome-binding GTPase JRI60_26825 PF07650 KH domain JRI60_26830 PF01926 50S ribosome-binding GTPase JRI60_26830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JRI60_26845 PF00293 NUDIX domain JRI60_26855 PF00069 Protein kinase domain JRI60_26855 PF08308 PEGA domain JRI60_26870 PF00182 Chitinase class I JRI60_26955 PF10459 Peptidase S46 JRI60_26960 PF00117 Glutamine amidotransferase class-I JRI60_26960 PF00958 GMP synthase C terminal domain JRI60_26970 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_26970 PF00571 CBS domain JRI60_26975 PF00012 Hsp70 protein JRI60_26980 PF09335 SNARE associated Golgi protein JRI60_26985 PF13545 Crp-like helix-turn-helix domain JRI60_26985 PF00027 Cyclic nucleotide-binding domain JRI60_26990 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_26995 PF01938 TRAM domain JRI60_26995 PF04055 Radical SAM superfamily JRI60_26995 PF00919 Uncharacterized protein family UPF0004 JRI60_27025 PF01242 6-pyruvoyl tetrahydropterin synthase JRI60_27030 PF01938 TRAM domain JRI60_27030 PF05958 tRNA (Uracil-5-)-methyltransferase JRI60_27035 PF01144 Coenzyme A transferase JRI60_27040 PF01144 Coenzyme A transferase JRI60_27045 PF02803 Thiolase, C-terminal domain JRI60_27045 PF00108 Thiolase, N-terminal domain JRI60_27055 PF00575 S1 RNA binding domain JRI60_27060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_27060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_27060 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_27070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_27070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_27070 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_27075 PF00378 Enoyl-CoA hydratase/isomerase JRI60_27080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_27080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_27095 PF10609 NUBPL iron-transfer P-loop NTPase JRI60_27095 PF01883 Iron-sulfur cluster assembly protein JRI60_27120 PF00069 Protein kinase domain JRI60_27120 PF03793 PASTA domain JRI60_27135 PF00005 ABC transporter JRI60_27140 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_27140 PF00571 CBS domain JRI60_27180 PF00106 short chain dehydrogenase JRI60_27185 PF01432 Peptidase family M3 JRI60_27190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_27190 PF00378 Enoyl-CoA hydratase/isomerase JRI60_27190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_27215 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_27215 PF00633 Helix-hairpin-helix motif JRI60_27220 PF00248 Aldo/keto reductase family JRI60_27225 PF00117 Glutamine amidotransferase class-I JRI60_27225 PF00958 GMP synthase C terminal domain JRI60_27235 PF00155 Aminotransferase class I and II JRI60_27235 PF00392 Bacterial regulatory proteins, gntR family JRI60_27265 PF00067 Cytochrome P450 JRI60_27270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_27270 PF00512 His Kinase A (phospho-acceptor) domain JRI60_27275 PF00486 Transcriptional regulatory protein, C terminal JRI60_27275 PF00072 Response regulator receiver domain JRI60_27310 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_27310 PF08659 KR domain JRI60_27310 PF14765 Polyketide synthase dehydratase JRI60_27310 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_27310 PF00107 Zinc-binding dehydrogenase JRI60_27310 PF00550 Phosphopantetheine attachment site JRI60_27310 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_27310 PF00698 Acyl transferase domain JRI60_27310 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_27325 PF03006 Haemolysin-III related JRI60_27370 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_27370 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_27370 PF17871 AAA lid domain JRI60_27370 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_27370 PF07724 AAA domain (Cdc48 subfamily) JRI60_27375 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_27375 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_27375 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_27375 PF07724 AAA domain (Cdc48 subfamily) JRI60_27375 PF17871 AAA lid domain JRI60_27380 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_27380 PF17871 AAA lid domain JRI60_27380 PF07724 AAA domain (Cdc48 subfamily) JRI60_27380 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_27390 PF00067 Cytochrome P450 JRI60_27395 PF00672 HAMP domain JRI60_27395 PF02743 Cache domain JRI60_27395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_27405 PF00067 Cytochrome P450 JRI60_27420 PF00202 Aminotransferase class-III JRI60_27440 PF00355 Rieske [2Fe-2S] domain JRI60_27455 PF01384 Phosphate transporter family JRI60_27460 PF00550 Phosphopantetheine attachment site JRI60_27480 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_27480 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_27490 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_27490 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_27495 PF07977 FabA-like domain JRI60_27520 PF01575 MaoC like domain JRI60_27520 PF00171 Aldehyde dehydrogenase family JRI60_27525 PF01137 RNA 3'-terminal phosphate cyclase JRI60_27525 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain JRI60_27540 PF00027 Cyclic nucleotide-binding domain JRI60_27540 PF07885 Ion channel JRI60_27550 PF01479 S4 domain JRI60_27550 PF00849 RNA pseudouridylate synthase JRI60_27555 PF04079 Segregation and condensation complex subunit ScpB JRI60_27560 PF02616 Segregation and condensation protein ScpA JRI60_27565 PF00579 tRNA synthetases class I (W and Y) JRI60_27595 PF02899 Phage integrase, N-terminal SAM-like domain JRI60_27595 PF00589 Phage integrase family JRI60_27600 PF01300 Telomere recombination JRI60_27605 PF02254 TrkA-N domain JRI60_27605 PF00999 Sodium/hydrogen exchanger family JRI60_27630 PF08335 GlnD PII-uridylyltransferase JRI60_27630 PF01909 Nucleotidyltransferase domain JRI60_27630 PF01966 HD domain JRI60_27640 PF00355 Rieske [2Fe-2S] domain JRI60_27670 PF00069 Protein kinase domain JRI60_27680 PF13005 zinc-finger binding domain of transposase IS66 JRI60_27680 PF13007 Transposase C of IS166 homeodomain JRI60_27680 PF03050 Transposase IS66 family JRI60_27680 PF13817 IS66 C-terminal element JRI60_27735 PF03050 Transposase IS66 family JRI60_27735 PF13005 zinc-finger binding domain of transposase IS66 JRI60_27735 PF13817 IS66 C-terminal element JRI60_27735 PF13007 Transposase C of IS166 homeodomain JRI60_27755 PF13087 AAA domain JRI60_27755 PF13086 AAA domain JRI60_27755 PF13195 Protein of unknown function (DUF4011) JRI60_27755 PF13087 AAA domain JRI60_27755 PF13086 AAA domain JRI60_27755 PF13195 Protein of unknown function (DUF4011) JRI60_27760 PF01520 N-acetylmuramoyl-L-alanine amidase JRI60_27805 PF03466 LysR substrate binding domain JRI60_27805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_27825 PF05190 MutS family domain IV JRI60_27825 PF05192 MutS domain III JRI60_27825 PF05188 MutS domain II JRI60_27825 PF00488 MutS domain V JRI60_27825 PF01624 MutS domain I JRI60_27830 PF06965 Na+/H+ antiporter 1 JRI60_27835 PF03109 ABC1 family JRI60_27840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JRI60_27845 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_27850 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_27850 PF12911 N-terminal TM domain of oligopeptide transport permease C JRI60_27855 PF00005 ABC transporter JRI60_27855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JRI60_27860 PF00005 ABC transporter JRI60_27860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JRI60_27865 PF14310 Fibronectin type III-like domain JRI60_27865 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_27865 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_27870 PF00873 AcrB/AcrD/AcrF family JRI60_27875 PF13533 Biotin-lipoyl like JRI60_27890 PF09383 NIL domain JRI60_27890 PF00005 ABC transporter JRI60_27895 PF02405 Permease MlaE JRI60_27910 PF02405 Permease MlaE JRI60_27915 PF00005 ABC transporter JRI60_27920 PF02470 MlaD protein JRI60_27930 PF00404 Dockerin type I domain JRI60_27930 PF00331 Glycosyl hydrolase family 10 JRI60_27930 PF00756 Putative esterase JRI60_27930 PF03422 Carbohydrate binding module (family 6) JRI60_27980 PF00753 Metallo-beta-lactamase superfamily JRI60_27980 PF12706 Beta-lactamase superfamily domain JRI60_27985 PF02954 Bacterial regulatory protein, Fis family JRI60_27985 PF00158 Sigma-54 interaction domain JRI60_27985 PF01590 GAF domain JRI60_27990 PF00672 HAMP domain JRI60_27990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_27990 PF13426 PAS domain JRI60_27990 PF00512 His Kinase A (phospho-acceptor) domain JRI60_27995 PF01965 DJ-1/PfpI family JRI60_28000 PF01965 DJ-1/PfpI family JRI60_28010 PF00069 Protein kinase domain JRI60_28010 PF03793 PASTA domain JRI60_28015 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_28025 PF01142 tRNA pseudouridine synthase D (TruD) JRI60_28030 PF08281 Sigma-70, region 4 JRI60_28030 PF04542 Sigma-70 region 2 JRI60_28055 PF01266 FAD dependent oxidoreductase JRI60_28060 PF00106 short chain dehydrogenase JRI60_28080 PF00891 O-methyltransferase domain JRI60_28090 PF01553 Acyltransferase JRI60_28090 PF00501 AMP-binding enzyme JRI60_28090 PF13193 AMP-binding enzyme C-terminal domain JRI60_28095 PF03372 Endonuclease/Exonuclease/phosphatase family JRI60_28100 PF00561 alpha/beta hydrolase fold JRI60_28105 PF00248 Aldo/keto reductase family JRI60_28115 PF00512 His Kinase A (phospho-acceptor) domain JRI60_28115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_28115 PF02743 Cache domain JRI60_28135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_28135 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_28135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_28140 PF12146 Serine aminopeptidase, S33 JRI60_28170 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JRI60_28170 PF14579 Helix-hairpin-helix motif JRI60_28170 PF02811 PHP domain JRI60_28170 PF07733 Bacterial DNA polymerase III alpha NTPase domain JRI60_28190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_28190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_28190 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_28195 PF00561 alpha/beta hydrolase fold JRI60_28195 PF08386 TAP-like protein JRI60_28210 PF01145 SPFH domain / Band 7 family JRI60_28220 PF00005 ABC transporter JRI60_28220 PF12848 ABC transporter JRI60_28330 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_28330 PF17862 AAA+ lid domain JRI60_28330 PF01434 Peptidase family M41 JRI60_28355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_28355 PF03466 LysR substrate binding domain JRI60_28360 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_28360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_28360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_28365 PF00106 short chain dehydrogenase JRI60_28365 PF00561 alpha/beta hydrolase fold JRI60_28385 PF00462 Glutaredoxin JRI60_28390 PF01370 NAD dependent epimerase/dehydratase family JRI60_28400 PF00535 Glycosyl transferase family 2 JRI60_28435 PF02424 ApbE family JRI60_28455 PF00154 recA bacterial DNA recombination protein JRI60_28465 PF02190 ATP-dependent protease La (LON) substrate-binding domain JRI60_28465 PF05362 Lon protease (S16) C-terminal proteolytic domain JRI60_28465 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_28475 PF00550 Phosphopantetheine attachment site JRI60_28475 PF07993 Male sterility protein JRI60_28475 PF00668 Condensation domain JRI60_28475 PF13193 AMP-binding enzyme C-terminal domain JRI60_28475 PF00501 AMP-binding enzyme JRI60_28480 PF13193 AMP-binding enzyme C-terminal domain JRI60_28480 PF00550 Phosphopantetheine attachment site JRI60_28480 PF00668 Condensation domain JRI60_28480 PF00668 Condensation domain JRI60_28480 PF00501 AMP-binding enzyme JRI60_28480 PF00550 Phosphopantetheine attachment site JRI60_28480 PF13193 AMP-binding enzyme C-terminal domain JRI60_28480 PF00501 AMP-binding enzyme JRI60_28480 PF00550 Phosphopantetheine attachment site JRI60_28480 PF00501 AMP-binding enzyme JRI60_28480 PF13193 AMP-binding enzyme C-terminal domain JRI60_28480 PF00668 Condensation domain JRI60_28485 PF13193 AMP-binding enzyme C-terminal domain JRI60_28485 PF00668 Condensation domain JRI60_28485 PF00668 Condensation domain JRI60_28485 PF00501 AMP-binding enzyme JRI60_28485 PF00501 AMP-binding enzyme JRI60_28485 PF00550 Phosphopantetheine attachment site JRI60_28485 PF00550 Phosphopantetheine attachment site JRI60_28485 PF13193 AMP-binding enzyme C-terminal domain JRI60_28490 PF00248 Aldo/keto reductase family JRI60_28515 PF03793 PASTA domain JRI60_28515 PF00069 Protein kinase domain JRI60_28525 PF01590 GAF domain JRI60_28525 PF00158 Sigma-54 interaction domain JRI60_28540 PF00067 Cytochrome P450 JRI60_28545 PF00557 Metallopeptidase family M24 JRI60_28550 PF00698 Acyl transferase domain JRI60_28550 PF03060 Nitronate monooxygenase JRI60_28555 PF00698 Acyl transferase domain JRI60_28560 PF00378 Enoyl-CoA hydratase/isomerase JRI60_28565 PF00378 Enoyl-CoA hydratase/isomerase JRI60_28570 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_28570 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_28575 PF00550 Phosphopantetheine attachment site JRI60_28580 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal JRI60_28580 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal JRI60_28585 PF14765 Polyketide synthase dehydratase JRI60_28585 PF00501 AMP-binding enzyme JRI60_28585 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_28585 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_28585 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_28585 PF13193 AMP-binding enzyme C-terminal domain JRI60_28585 PF00550 Phosphopantetheine attachment site JRI60_28585 PF08659 KR domain JRI60_28585 PF00668 Condensation domain JRI60_28595 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_28595 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_28595 PF08659 KR domain JRI60_28595 PF00550 Phosphopantetheine attachment site JRI60_28595 PF00501 AMP-binding enzyme JRI60_28595 PF00668 Condensation domain JRI60_28595 PF14765 Polyketide synthase dehydratase JRI60_28595 PF13193 AMP-binding enzyme C-terminal domain JRI60_28595 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_28600 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_28600 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_28600 PF08659 KR domain JRI60_28600 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_28600 PF14765 Polyketide synthase dehydratase JRI60_28600 PF00550 Phosphopantetheine attachment site JRI60_28610 PF01118 Semialdehyde dehydrogenase, NAD binding domain JRI60_28610 PF02774 Semialdehyde dehydrogenase, dimerisation domain JRI60_28615 PF01960 ArgJ family JRI60_28620 PF01316 Arginine repressor, DNA binding domain JRI60_28620 PF02863 Arginine repressor, C-terminal domain JRI60_28625 PF14698 Argininosuccinate lyase C-terminal JRI60_28625 PF00206 Lyase JRI60_28630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JRI60_28630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JRI60_28635 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JRI60_28640 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JRI60_28640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_28640 PF02142 MGS-like domain JRI60_28650 PF00155 Aminotransferase class I and II JRI60_28655 PF01467 Cytidylyltransferase-like JRI60_28670 PF00909 Ammonium Transporter Family JRI60_28690 PF08264 Anticodon-binding domain of tRNA JRI60_28690 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_28695 PF02013 Cellulose or protein binding domain JRI60_28695 PF00553 Cellulose binding domain JRI60_28695 PF02015 Glycosyl hydrolase family 45 JRI60_28705 PF04235 Protein of unknown function (DUF418) JRI60_28745 PF01522 Polysaccharide deacetylase JRI60_28780 PF01545 Cation efflux family JRI60_28785 PF00158 Sigma-54 interaction domain JRI60_28785 PF02954 Bacterial regulatory protein, Fis family JRI60_28785 PF00072 Response regulator receiver domain JRI60_28795 PF03144 Elongation factor Tu domain 2 JRI60_28795 PF00009 Elongation factor Tu GTP binding domain JRI60_28795 PF14492 Elongation Factor G, domain II JRI60_28795 PF00679 Elongation factor G C-terminus JRI60_28800 PF07690 Major Facilitator Superfamily JRI60_28825 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JRI60_28825 PF02321 Outer membrane efflux protein JRI60_28835 PF00873 AcrB/AcrD/AcrF family JRI60_28840 PF01593 Flavin containing amine oxidoreductase JRI60_28850 PF03109 ABC1 family JRI60_28865 PF00512 His Kinase A (phospho-acceptor) domain JRI60_28865 PF18698 Histidine kinase sensor domain JRI60_28865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_28865 PF00672 HAMP domain JRI60_28865 PF00989 PAS fold JRI60_28945 PF03466 LysR substrate binding domain JRI60_28945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_28950 PF13840 ACT domain JRI60_28950 PF00696 Amino acid kinase family JRI60_28950 PF01842 ACT domain JRI60_28955 PF01959 3-dehydroquinate synthase II JRI60_28960 PF01791 DeoC/LacD family aldolase JRI60_28975 PF13193 AMP-binding enzyme C-terminal domain JRI60_28975 PF00501 AMP-binding enzyme JRI60_28990 PF02566 OsmC-like protein JRI60_29000 PF07995 Glucose / Sorbosone dehydrogenase JRI60_29005 PF00144 Beta-lactamase JRI60_29035 PF00144 Beta-lactamase JRI60_29050 PF00553 Cellulose binding domain JRI60_29050 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_29090 PF01047 MarR family JRI60_29105 PF00440 Bacterial regulatory proteins, tetR family JRI60_29115 PF00297 Ribosomal protein L3 JRI60_29145 PF01464 Transglycosylase SLT domain JRI60_29145 PF01551 Peptidase family M23 JRI60_29145 PF10145 Phage-related minor tail protein JRI60_29155 PF00672 HAMP domain JRI60_29155 PF13426 PAS domain JRI60_29155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_29155 PF00512 His Kinase A (phospho-acceptor) domain JRI60_29160 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_29160 PF17863 AAA lid domain JRI60_29175 PF04545 Sigma-70, region 4 JRI60_29175 PF04542 Sigma-70 region 2 JRI60_29175 PF00140 Sigma-70 factor, region 1.2 JRI60_29180 PF03169 OPT oligopeptide transporter protein JRI60_29195 PF01966 HD domain JRI60_29195 PF11871 Domain of unknown function (DUF3391) JRI60_29210 PF00893 Small Multidrug Resistance protein JRI60_29215 PF01479 S4 domain JRI60_29215 PF00849 RNA pseudouridylate synthase JRI60_29230 PF10609 NUBPL iron-transfer P-loop NTPase JRI60_29245 PF03841 L-seryl-tRNA selenium transferase JRI60_29245 PF12390 Selenocysteine synthase N terminal JRI60_29250 PF01464 Transglycosylase SLT domain JRI60_29255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_29255 PF00512 His Kinase A (phospho-acceptor) domain JRI60_29280 PF07152 YaeQ protein JRI60_29305 PF00795 Carbon-nitrogen hydrolase JRI60_29315 PF12848 ABC transporter JRI60_29315 PF00005 ABC transporter JRI60_29320 PF00069 Protein kinase domain JRI60_29330 PF02224 Cytidylate kinase JRI60_29335 PF00155 Aminotransferase class I and II JRI60_29340 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JRI60_29355 PF02374 Anion-transporting ATPase JRI60_29360 PF02954 Bacterial regulatory protein, Fis family JRI60_29360 PF00072 Response regulator receiver domain JRI60_29360 PF00158 Sigma-54 interaction domain JRI60_29390 PF00012 Hsp70 protein JRI60_29400 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_29400 PF07724 AAA domain (Cdc48 subfamily) JRI60_29400 PF06689 ClpX C4-type zinc finger JRI60_29415 PF01416 tRNA pseudouridine synthase JRI60_29430 PF02540 NAD synthase JRI60_29435 PF01747 ATP-sulfurylase JRI60_29435 PF14306 PUA-like domain JRI60_29445 PF02597 ThiS family JRI60_29455 PF07730 Histidine kinase JRI60_29460 PF00196 Bacterial regulatory proteins, luxR family JRI60_29460 PF00072 Response regulator receiver domain JRI60_29485 PF03576 Peptidase family S58 JRI60_29490 PF00440 Bacterial regulatory proteins, tetR family JRI60_29520 PF00264 Common central domain of tyrosinase JRI60_29525 PF00069 Protein kinase domain JRI60_29525 PF03793 PASTA domain JRI60_29530 PF00158 Sigma-54 interaction domain JRI60_29530 PF00072 Response regulator receiver domain JRI60_29530 PF02954 Bacterial regulatory protein, Fis family JRI60_29600 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JRI60_29640 PF00691 OmpA family JRI60_29655 PF01820 D-ala D-ala ligase N-terminus JRI60_29655 PF07478 D-ala D-ala ligase C-terminus JRI60_29670 PF00490 Delta-aminolevulinic acid dehydratase JRI60_29680 PF00005 ABC transporter JRI60_29695 PF05175 Methyltransferase small domain JRI60_29715 PF01739 CheR methyltransferase, SAM binding domain JRI60_29720 PF01339 CheB methylesterase JRI60_29725 PF01584 CheW-like domain JRI60_29725 PF01627 Hpt domain JRI60_29725 PF00072 Response regulator receiver domain JRI60_29725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_29730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_29740 PF01584 CheW-like domain JRI60_29755 PF04055 Radical SAM superfamily JRI60_29755 PF06463 Molybdenum Cofactor Synthesis C JRI60_29760 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JRI60_29760 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JRI60_29765 PF04542 Sigma-70 region 2 JRI60_29765 PF08281 Sigma-70, region 4 JRI60_29785 PF03309 Type III pantothenate kinase JRI60_29790 PF08279 HTH domain JRI60_29790 PF02237 Biotin protein ligase C terminal domain JRI60_29790 PF03099 Biotin/lipoate A/B protein ligase family JRI60_29795 PF00742 Homoserine dehydrogenase JRI60_29795 PF03447 Homoserine dehydrogenase, NAD binding domain JRI60_29795 PF01842 ACT domain JRI60_29850 PF01627 Hpt domain JRI60_29850 PF00672 HAMP domain JRI60_29850 PF00512 His Kinase A (phospho-acceptor) domain JRI60_29850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_29850 PF17149 Periplasmic sensor domain found in signal transduction proteins JRI60_29850 PF00072 Response regulator receiver domain JRI60_29855 PF00485 Phosphoribulokinase / Uridine kinase family JRI60_29865 PF05114 Protein of unknown function (DUF692) JRI60_29885 PF00207 Alpha-2-macroglobulin family JRI60_29885 PF07703 Alpha-2-macroglobulin bait region domain JRI60_29885 PF01835 MG2 domain JRI60_29925 PF00912 Transglycosylase JRI60_29940 PF00437 Type II/IV secretion system protein JRI60_29950 PF01625 Peptide methionine sulfoxide reductase JRI60_29955 PF00005 ABC transporter JRI60_29955 PF02687 FtsX-like permease family JRI60_29955 PF12704 MacB-like periplasmic core domain JRI60_29960 PF02687 FtsX-like permease family JRI60_29960 PF12704 MacB-like periplasmic core domain JRI60_29960 PF00005 ABC transporter JRI60_29965 PF00005 ABC transporter JRI60_29985 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_29985 PF07724 AAA domain (Cdc48 subfamily) JRI60_29985 PF17871 AAA lid domain JRI60_29985 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_29985 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_30010 PF00512 His Kinase A (phospho-acceptor) domain JRI60_30010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_30010 PF02743 Cache domain JRI60_30030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_30030 PF00512 His Kinase A (phospho-acceptor) domain JRI60_30030 PF08448 PAS fold JRI60_30030 PF00072 Response regulator receiver domain JRI60_30030 PF13188 PAS domain JRI60_30070 PF02872 5'-nucleotidase, C-terminal domain JRI60_30070 PF00149 Calcineurin-like phosphoesterase JRI60_30075 PF02146 Sir2 family JRI60_30080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_30080 PF08447 PAS fold JRI60_30080 PF08448 PAS fold JRI60_30085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_30085 PF00512 His Kinase A (phospho-acceptor) domain JRI60_30095 PF18354 CarS bacterial SH3 domain JRI60_30105 PF04545 Sigma-70, region 4 JRI60_30105 PF04542 Sigma-70 region 2 JRI60_30110 PF03466 LysR substrate binding domain JRI60_30110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_30125 PF03793 PASTA domain JRI60_30125 PF00069 Protein kinase domain JRI60_30130 PF00690 Cation transporter/ATPase, N-terminus JRI60_30130 PF00689 Cation transporting ATPase, C-terminus JRI60_30135 PF01467 Cytidylyltransferase-like JRI60_30145 PF07075 Protein of unknown function (DUF1343) JRI60_30150 PF00069 Protein kinase domain JRI60_30150 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_30160 PF00488 MutS domain V JRI60_30160 PF01713 Smr domain JRI60_30170 PF00553 Cellulose binding domain JRI60_30170 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_30170 PF00041 Fibronectin type III domain JRI60_30175 PF00759 Glycosyl hydrolase family 9 JRI60_30175 PF00942 Cellulose binding domain JRI60_30180 PF02011 Glycosyl hydrolase family 48 JRI60_30180 PF00041 Fibronectin type III domain JRI60_30180 PF00553 Cellulose binding domain JRI60_30185 PF17912 MalK OB fold domain JRI60_30185 PF00005 ABC transporter JRI60_30190 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_30195 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_30200 PF01547 Bacterial extracellular solute-binding protein JRI60_30205 PF00232 Glycosyl hydrolase family 1 JRI60_30210 PF00356 Bacterial regulatory proteins, lacI family JRI60_30215 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JRI60_30215 PF18416 N-acetylglucosamine binding protein domain 2 JRI60_30230 PF00512 His Kinase A (phospho-acceptor) domain JRI60_30230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_30240 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family JRI60_30265 PF00581 Rhodanese-like domain JRI60_30270 PF00849 RNA pseudouridylate synthase JRI60_30275 PF08787 Alginate lyase JRI60_30280 PF00773 RNB domain JRI60_30280 PF00575 S1 RNA binding domain JRI60_30280 PF08206 Ribonuclease B OB domain JRI60_30280 PF08461 Ribonuclease R winged-helix domain JRI60_30280 PF17876 Cold shock domain JRI60_30290 PF03453 MoeA N-terminal region (domain I and II) JRI60_30290 PF03454 MoeA C-terminal region (domain IV) JRI60_30290 PF00994 Probable molybdopterin binding domain JRI60_30295 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JRI60_30295 PF00925 GTP cyclohydrolase II JRI60_30305 PF00293 NUDIX domain JRI60_30305 PF03099 Biotin/lipoate A/B protein ligase family JRI60_30310 PF00005 ABC transporter JRI60_30315 PF02817 e3 binding domain JRI60_30315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JRI60_30315 PF00364 Biotin-requiring enzyme JRI60_30320 PF04055 Radical SAM superfamily JRI60_30320 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JRI60_30330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JRI60_30330 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_30350 PF00773 RNB domain JRI60_30350 PF08206 Ribonuclease B OB domain JRI60_30350 PF17876 Cold shock domain JRI60_30350 PF00575 S1 RNA binding domain JRI60_30360 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JRI60_30360 PF01502 Phosphoribosyl-AMP cyclohydrolase JRI60_30365 PF00459 Inositol monophosphatase family JRI60_30370 PF00977 Histidine biosynthesis protein JRI60_30375 PF00475 Imidazoleglycerol-phosphate dehydratase JRI60_30380 PF00977 Histidine biosynthesis protein JRI60_30385 PF00117 Glutamine amidotransferase class-I JRI60_30390 PF00155 Aminotransferase class I and II JRI60_30395 PF00815 Histidinol dehydrogenase JRI60_30400 PF08029 HisG, C-terminal domain JRI60_30400 PF01634 ATP phosphoribosyltransferase JRI60_30405 PF00072 Response regulator receiver domain JRI60_30410 PF06463 Molybdenum Cofactor Synthesis C JRI60_30410 PF04055 Radical SAM superfamily JRI60_30420 PF13667 ThiC-associated domain JRI60_30420 PF01964 Radical SAM ThiC family JRI60_30425 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_30425 PF00571 CBS domain JRI60_30440 PF02954 Bacterial regulatory protein, Fis family JRI60_30440 PF00158 Sigma-54 interaction domain JRI60_30440 PF00072 Response regulator receiver domain JRI60_30445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_30445 PF00512 His Kinase A (phospho-acceptor) domain JRI60_30450 PF00072 Response regulator receiver domain JRI60_30455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_30505 PF08443 RimK-like ATP-grasp domain JRI60_30505 PF08245 Mur ligase middle domain JRI60_30505 PF02875 Mur ligase family, glutamate ligase domain JRI60_30515 PF03551 Transcriptional regulator PadR-like family JRI60_30535 PF00743 Flavin-binding monooxygenase-like JRI60_30545 PF07859 alpha/beta hydrolase fold JRI60_30550 PF00255 Glutathione peroxidase JRI60_30595 PF07730 Histidine kinase JRI60_30595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_30595 PF13492 GAF domain JRI60_30595 PF13185 GAF domain JRI60_30635 PF00069 Protein kinase domain JRI60_30640 PF02954 Bacterial regulatory protein, Fis family JRI60_30640 PF00072 Response regulator receiver domain JRI60_30640 PF00158 Sigma-54 interaction domain JRI60_30645 PF03793 PASTA domain JRI60_30645 PF00069 Protein kinase domain JRI60_30680 PF00743 Flavin-binding monooxygenase-like JRI60_30685 PF00440 Bacterial regulatory proteins, tetR family JRI60_30685 PF08362 YcdC-like protein, C-terminal region JRI60_30690 PF03466 LysR substrate binding domain JRI60_30690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_30710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_30710 PF03466 LysR substrate binding domain JRI60_30720 PF00857 Isochorismatase family JRI60_30725 PF03466 LysR substrate binding domain JRI60_30725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_30735 PF00067 Cytochrome P450 JRI60_30740 PF01047 MarR family JRI60_30755 PF03466 LysR substrate binding domain JRI60_30760 PF00248 Aldo/keto reductase family JRI60_30765 PF00107 Zinc-binding dehydrogenase JRI60_30765 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_30795 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_30795 PF00107 Zinc-binding dehydrogenase JRI60_30800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_30800 PF03466 LysR substrate binding domain JRI60_30805 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JRI60_30820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_30820 PF03466 LysR substrate binding domain JRI60_30845 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JRI60_30845 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JRI60_30860 PF13180 PDZ domain JRI60_30865 PF01025 GrpE JRI60_30875 PF01434 Peptidase family M41 JRI60_30875 PF17862 AAA+ lid domain JRI60_30875 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_30875 PF06480 FtsH Extracellular JRI60_30885 PF00293 NUDIX domain JRI60_30890 PF07238 PilZ domain JRI60_30890 PF00069 Protein kinase domain JRI60_30900 PF03918 Cytochrome C biogenesis protein JRI60_30910 PF00069 Protein kinase domain JRI60_30910 PF08308 PEGA domain JRI60_30920 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JRI60_30935 PF01933 Uncharacterised protein family UPF0052 JRI60_30940 PF02397 Bacterial sugar transferase JRI60_30945 PF13614 AAA domain JRI60_30970 PF00128 Alpha amylase, catalytic domain JRI60_30970 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_30970 PF11941 Domain of unknown function (DUF3459) JRI60_30990 PF00106 short chain dehydrogenase JRI60_30995 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_30995 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_31000 PF00067 Cytochrome P450 JRI60_31005 PF00942 Cellulose binding domain JRI60_31010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_31010 PF00072 Response regulator receiver domain JRI60_31010 PF13426 PAS domain JRI60_31025 PF12002 MgsA AAA+ ATPase C terminal JRI60_31025 PF16193 AAA C-terminal domain JRI60_31025 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_31030 PF00881 Nitroreductase family JRI60_31035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_31035 PF03466 LysR substrate binding domain JRI60_31045 PF03055 Retinal pigment epithelial membrane protein JRI60_31085 PF02146 Sir2 family JRI60_31090 PF00579 tRNA synthetases class I (W and Y) JRI60_31120 PF01554 MatE JRI60_31135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_31135 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JRI60_31145 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JRI60_31150 PF01261 Xylose isomerase-like TIM barrel JRI60_31155 PF00534 Glycosyl transferases group 1 JRI60_31155 PF13439 Glycosyltransferase Family 4 JRI60_31160 PF02585 GlcNAc-PI de-N-acetylase JRI60_31165 PF01494 FAD binding domain JRI60_31175 PF01425 Amidase JRI60_31205 PF04542 Sigma-70 region 2 JRI60_31205 PF08281 Sigma-70, region 4 JRI60_31235 PF01370 NAD dependent epimerase/dehydratase family JRI60_31240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_31240 PF00989 PAS fold JRI60_31240 PF00512 His Kinase A (phospho-acceptor) domain JRI60_31245 PF00270 DEAD/DEAH box helicase JRI60_31245 PF03880 DbpA RNA binding domain JRI60_31245 PF00271 Helicase conserved C-terminal domain JRI60_31255 PF06965 Na+/H+ antiporter 1 JRI60_31255 PF13462 Thioredoxin JRI60_31260 PF02954 Bacterial regulatory protein, Fis family JRI60_31260 PF00072 Response regulator receiver domain JRI60_31260 PF00158 Sigma-54 interaction domain JRI60_31265 PF00990 Diguanylate cyclase, GGDEF domain JRI60_31265 PF07694 5TMR of 5TMR-LYT JRI60_31285 PF00905 Penicillin binding protein transpeptidase domain JRI60_31295 PF00005 ABC transporter JRI60_31300 PF13462 Thioredoxin JRI60_31300 PF06965 Na+/H+ antiporter 1 JRI60_31305 PF01042 Endoribonuclease L-PSP JRI60_31320 PF04607 Region found in RelA / SpoT proteins JRI60_31320 PF02824 TGS domain JRI60_31320 PF13291 ACT domain JRI60_31330 PF00069 Protein kinase domain JRI60_31340 PF01258 Prokaryotic dksA/traR C4-type zinc finger JRI60_31355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_31355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_31355 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_31360 PF00378 Enoyl-CoA hydratase/isomerase JRI60_31360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_31360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_31365 PF02803 Thiolase, C-terminal domain JRI60_31365 PF00108 Thiolase, N-terminal domain JRI60_31390 PF00012 Hsp70 protein JRI60_31405 PF04359 Protein of unknown function (DUF493) JRI60_31410 PF02562 PhoH-like protein JRI60_31410 PF13638 PIN domain JRI60_31415 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_31415 PF03449 Transcription elongation factor, N-terminal JRI60_31430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_31430 PF03466 LysR substrate binding domain JRI60_31435 PF14765 Polyketide synthase dehydratase JRI60_31435 PF00550 Phosphopantetheine attachment site JRI60_31435 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_31435 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_31435 PF00107 Zinc-binding dehydrogenase JRI60_31435 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_31435 PF00698 Acyl transferase domain JRI60_31435 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_31435 PF08659 KR domain JRI60_31460 PF01209 ubiE/COQ5 methyltransferase family JRI60_31465 PF00672 HAMP domain JRI60_31465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_31465 PF00512 His Kinase A (phospho-acceptor) domain JRI60_31465 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_31465 PF08448 PAS fold JRI60_31475 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JRI60_31480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_31480 PF03466 LysR substrate binding domain JRI60_31485 PF00512 His Kinase A (phospho-acceptor) domain JRI60_31485 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_31485 PF00072 Response regulator receiver domain JRI60_31485 PF01627 Hpt domain JRI60_31485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_31490 PF13407 Periplasmic binding protein domain JRI60_31505 PF14521 Lysine-specific metallo-endopeptidase JRI60_31510 PF01575 MaoC like domain JRI60_31515 PF00457 Glycosyl hydrolases family 11 JRI60_31515 PF01522 Polysaccharide deacetylase JRI60_31520 PF17128 Domain of unknown function (DUF5107) JRI60_31520 PF13181 Tetratricopeptide repeat JRI60_31525 PF00155 Aminotransferase class I and II JRI60_31530 PF00722 Glycosyl hydrolases family 16 JRI60_31545 PF00512 His Kinase A (phospho-acceptor) domain JRI60_31545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_31545 PF00989 PAS fold JRI60_31550 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JRI60_31550 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JRI60_31555 PF00258 Flavodoxin JRI60_31555 PF00175 Oxidoreductase NAD-binding domain JRI60_31555 PF00667 FAD binding domain JRI60_31560 PF00009 Elongation factor Tu GTP binding domain JRI60_31565 PF01507 Phosphoadenosine phosphosulfate reductase family JRI60_31570 PF10414 Sirohaem synthase dimerisation region JRI60_31570 PF14824 Sirohaem biosynthesis protein central JRI60_31570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_31575 PF10414 Sirohaem synthase dimerisation region JRI60_31575 PF14824 Sirohaem biosynthesis protein central JRI60_31575 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_31580 PF01507 Phosphoadenosine phosphosulfate reductase family JRI60_31590 PF03476 MOSC N-terminal beta barrel domain JRI60_31590 PF03473 MOSC domain JRI60_31590 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_31595 PF13191 AAA ATPase domain JRI60_31595 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_31600 PF03631 Virulence factor BrkB JRI60_31615 PF07885 Ion channel JRI60_31615 PF00027 Cyclic nucleotide-binding domain JRI60_31620 PF00557 Metallopeptidase family M24 JRI60_31620 PF01321 Creatinase/Prolidase N-terminal domain JRI60_31625 PF03413 Peptidase propeptide and YPEB domain JRI60_31625 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_31625 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_31625 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_31625 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_31640 PF00512 His Kinase A (phospho-acceptor) domain JRI60_31640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_31645 PF00486 Transcriptional regulatory protein, C terminal JRI60_31645 PF00072 Response regulator receiver domain JRI60_31680 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_31685 PF03459 TOBE domain JRI60_31685 PF00005 ABC transporter JRI60_31695 PF13533 Biotin-lipoyl like JRI60_31705 PF00664 ABC transporter transmembrane region JRI60_31705 PF03412 Peptidase C39 family JRI60_31705 PF00005 ABC transporter JRI60_31720 PF05147 Lanthionine synthetase C-like protein JRI60_31720 PF13575 Domain of unknown function (DUF4135) JRI60_31730 PF00196 Bacterial regulatory proteins, luxR family JRI60_31730 PF00072 Response regulator receiver domain JRI60_31735 PF00011 Hsp20/alpha crystallin family JRI60_31760 PF00795 Carbon-nitrogen hydrolase JRI60_31800 PF13732 Domain of unknown function (DUF4162) JRI60_31800 PF00005 ABC transporter JRI60_31820 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JRI60_31840 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_31840 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_31845 PF01799 [2Fe-2S] binding domain JRI60_31845 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_31855 PF08659 KR domain JRI60_31855 PF00550 Phosphopantetheine attachment site JRI60_31855 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_31855 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_31855 PF00668 Condensation domain JRI60_31855 PF13193 AMP-binding enzyme C-terminal domain JRI60_31855 PF00501 AMP-binding enzyme JRI60_31855 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_31855 PF14765 Polyketide synthase dehydratase JRI60_31860 PF00512 His Kinase A (phospho-acceptor) domain JRI60_31860 PF00989 PAS fold JRI60_31860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_31880 PF01556 DnaJ C terminal domain JRI60_31880 PF00684 DnaJ central domain JRI60_31880 PF00226 DnaJ domain JRI60_31885 PF14748 Pyrroline-5-carboxylate reductase dimerisation JRI60_31885 PF03807 NADP oxidoreductase coenzyme F420-dependent JRI60_31895 PF02594 Uncharacterised ACR, YggU family COG1872 JRI60_31920 PF01612 3'-5' exonuclease JRI60_31920 PF01367 5'-3' exonuclease, C-terminal SAM fold JRI60_31920 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JRI60_31920 PF00476 DNA polymerase family A JRI60_31930 PF00437 Type II/IV secretion system protein JRI60_31935 PF03958 Bacterial type II/III secretion system short domain JRI60_31935 PF00263 Bacterial type II and III secretion system protein JRI60_31945 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_31960 PF02092 Glycyl-tRNA synthetase beta subunit JRI60_31960 PF05746 DALR anticodon binding domain JRI60_31965 PF02091 Glycyl-tRNA synthetase alpha subunit JRI60_31970 PF08308 PEGA domain JRI60_31970 PF00069 Protein kinase domain JRI60_31975 PF00294 pfkB family carbohydrate kinase JRI60_31980 PF02565 Recombination protein O C terminal JRI60_31980 PF11967 Recombination protein O N terminal JRI60_32015 PF04997 RNA polymerase Rpb1, domain 1 JRI60_32015 PF04983 RNA polymerase Rpb1, domain 3 JRI60_32015 PF04998 RNA polymerase Rpb1, domain 5 JRI60_32015 PF05000 RNA polymerase Rpb1, domain 4 JRI60_32015 PF00623 RNA polymerase Rpb1, domain 2 JRI60_32020 PF04563 RNA polymerase beta subunit JRI60_32020 PF04561 RNA polymerase Rpb2, domain 2 JRI60_32020 PF04565 RNA polymerase Rpb2, domain 3 JRI60_32020 PF10385 RNA polymerase beta subunit external 1 domain JRI60_32020 PF04560 RNA polymerase Rpb2, domain 7 JRI60_32020 PF00562 RNA polymerase Rpb2, domain 6 JRI60_32025 PF16320 Ribosomal protein L7/L12 dimerisation domain JRI60_32025 PF00542 Ribosomal protein L7/L12 C-terminal domain JRI60_32030 PF00466 Ribosomal protein L10 JRI60_32035 PF00687 Ribosomal protein L1p/L10e family JRI60_32040 PF03946 Ribosomal protein L11, N-terminal domain JRI60_32040 PF00298 Ribosomal protein L11, RNA binding domain JRI60_32045 PF02357 Transcription termination factor nusG JRI60_32045 PF00467 KOW motif JRI60_32060 PF00471 Ribosomal protein L33 JRI60_32065 PF03144 Elongation factor Tu domain 2 JRI60_32065 PF00009 Elongation factor Tu GTP binding domain JRI60_32065 PF03143 Elongation factor Tu C-terminal domain JRI60_32090 PF00588 SpoU rRNA Methylase family JRI60_32090 PF08032 RNA 2'-O ribose methyltransferase substrate binding JRI60_32100 PF18030 RimK PreATP-grasp domain JRI60_32100 PF08443 RimK-like ATP-grasp domain JRI60_32125 PF00270 DEAD/DEAH box helicase JRI60_32125 PF04408 Helicase associated domain (HA2) JRI60_32125 PF00271 Helicase conserved C-terminal domain JRI60_32125 PF08482 ATP-dependent helicase C-terminal JRI60_32150 PF11953 Domain of unknown function (DUF3470) JRI60_32150 PF00037 4Fe-4S binding domain JRI60_32155 PF02774 Semialdehyde dehydrogenase, dimerisation domain JRI60_32155 PF01118 Semialdehyde dehydrogenase, NAD binding domain JRI60_32165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_32165 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_32165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_32175 PF02225 PA domain JRI60_32175 PF04389 Peptidase family M28 JRI60_32185 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JRI60_32185 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JRI60_32185 PF02769 AIR synthase related protein, C-terminal domain JRI60_32195 PF01568 Molydopterin dinucleotide binding domain JRI60_32195 PF00384 Molybdopterin oxidoreductase JRI60_32195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JRI60_32200 PF17171 Glutathione S-transferase, C-terminal domain JRI60_32200 PF17172 Glutathione S-transferase N-terminal domain JRI60_32210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_32215 PF04209 homogentisate 1,2-dioxygenase JRI60_32280 PF04717 Type VI secretion system, phage-baseplate injector JRI60_32280 PF06715 Gp5 C-terminal repeat (3 copies) JRI60_32340 PF01695 IstB-like ATP binding protein JRI60_32345 PF00665 Integrase core domain JRI60_32360 PF09924 Uncharacterised conserved protein (DUF2156) JRI60_32360 PF03706 Lysylphosphatidylglycerol synthase TM region JRI60_32370 PF13180 PDZ domain JRI60_32380 PF04122 Putative cell wall binding repeat 2 JRI60_32380 PF08486 Stage II sporulation protein JRI60_32390 PF16916 Dimerisation domain of Zinc Transporter JRI60_32390 PF01545 Cation efflux family JRI60_32405 PF00072 Response regulator receiver domain JRI60_32405 PF08448 PAS fold JRI60_32405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_32405 PF00512 His Kinase A (phospho-acceptor) domain JRI60_32405 PF13188 PAS domain JRI60_32410 PF01594 AI-2E family transporter JRI60_32425 PF02347 Glycine cleavage system P-protein JRI60_32430 PF01597 Glycine cleavage H-protein JRI60_32435 PF01571 Aminomethyltransferase folate-binding domain JRI60_32435 PF08669 Glycine cleavage T-protein C-terminal barrel domain JRI60_32440 PF02219 Methylenetetrahydrofolate reductase JRI60_32450 PF00561 alpha/beta hydrolase fold JRI60_32460 PF00593 TonB dependent receptor JRI60_32460 PF07715 TonB-dependent Receptor Plug Domain JRI60_32470 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_32470 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_32470 PF14310 Fibronectin type III-like domain JRI60_32480 PF00069 Protein kinase domain JRI60_32480 PF03793 PASTA domain JRI60_32495 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_32495 PF00942 Cellulose binding domain JRI60_32495 PF12891 Glycoside hydrolase family 44 JRI60_32500 PF02653 Branched-chain amino acid transport system / permease component JRI60_32505 PF00005 ABC transporter JRI60_32510 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JRI60_32520 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JRI60_32520 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JRI60_32525 PF05099 Tellurite resistance protein TerB JRI60_32525 PF00226 DnaJ domain JRI60_32530 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_32535 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_32540 PF03447 Homoserine dehydrogenase, NAD binding domain JRI60_32540 PF00742 Homoserine dehydrogenase JRI60_32540 PF00696 Amino acid kinase family JRI60_32540 PF01842 ACT domain JRI60_32540 PF13840 ACT domain JRI60_32555 PF01713 Smr domain JRI60_32560 PF00962 Adenosine/AMP deaminase JRI60_32565 PF01180 Dihydroorotate dehydrogenase JRI60_32575 PF13439 Glycosyltransferase Family 4 JRI60_32575 PF00534 Glycosyl transferases group 1 JRI60_32590 PF01926 50S ribosome-binding GTPase JRI60_32605 PF01121 Dephospho-CoA kinase JRI60_32625 PF00202 Aminotransferase class-III JRI60_32630 PF07724 AAA domain (Cdc48 subfamily) JRI60_32630 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_32635 PF00227 Proteasome subunit JRI60_32685 PF00589 Phage integrase family JRI60_32685 PF02899 Phage integrase, N-terminal SAM-like domain JRI60_32695 PF01134 Glucose inhibited division protein A JRI60_32720 PF01751 Toprim domain JRI60_32720 PF01396 Topoisomerase DNA binding C4 zinc finger JRI60_32720 PF01131 DNA topoisomerase JRI60_32725 PF02481 DNA recombination-mediator protein A JRI60_32740 PF02578 Multi-copper polyphenol oxidoreductase laccase JRI60_32745 PF00990 Diguanylate cyclase, GGDEF domain JRI60_32755 PF17820 PDZ domain JRI60_32755 PF13180 PDZ domain JRI60_32765 PF03065 Glycosyl hydrolase family 57 JRI60_32765 PF09210 Domain of unknown function (DUF1957) JRI60_32780 PF00072 Response regulator receiver domain JRI60_32790 PF17871 AAA lid domain JRI60_32790 PF07724 AAA domain (Cdc48 subfamily) JRI60_32790 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_32790 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_32790 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_32795 PF03710 Glutamate-ammonia ligase adenylyltransferase JRI60_32795 PF08335 GlnD PII-uridylyltransferase JRI60_32805 PF01063 Amino-transferase class IV JRI60_32810 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_32810 PF16193 AAA C-terminal domain JRI60_32810 PF12002 MgsA AAA+ ATPase C terminal JRI60_32825 PF00266 Aminotransferase class-V JRI60_32835 PF00069 Protein kinase domain JRI60_32855 PF13277 YmdB-like protein JRI60_32860 PF01479 S4 domain JRI60_32860 PF00579 tRNA synthetases class I (W and Y) JRI60_32865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_32865 PF00672 HAMP domain JRI60_32865 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_32865 PF08448 PAS fold JRI60_32865 PF00512 His Kinase A (phospho-acceptor) domain JRI60_32870 PF01325 Iron dependent repressor, N-terminal DNA binding domain JRI60_32870 PF00480 ROK family JRI60_32875 PF00005 ABC transporter JRI60_32880 PF02653 Branched-chain amino acid transport system / permease component JRI60_32885 PF13407 Periplasmic binding protein domain JRI60_32895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_32895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JRI60_32915 PF00149 Calcineurin-like phosphoesterase JRI60_32920 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JRI60_32920 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JRI60_32925 PF00207 Alpha-2-macroglobulin family JRI60_32925 PF07703 Alpha-2-macroglobulin bait region domain JRI60_32925 PF01835 MG2 domain JRI60_32930 PF02586 SOS response associated peptidase (SRAP) JRI60_32940 PF01728 FtsJ-like methyltransferase JRI60_32955 PF03793 PASTA domain JRI60_32955 PF00069 Protein kinase domain JRI60_32960 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_32960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_32960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_32985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_32985 PF00512 His Kinase A (phospho-acceptor) domain JRI60_32995 PF00550 Phosphopantetheine attachment site JRI60_32995 PF00698 Acyl transferase domain JRI60_32995 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_32995 PF14765 Polyketide synthase dehydratase JRI60_32995 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_32995 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_32995 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_32995 PF08659 KR domain JRI60_33000 PF00698 Acyl transferase domain JRI60_33000 PF00975 Thioesterase domain JRI60_33000 PF08990 Erythronolide synthase docking JRI60_33000 PF00550 Phosphopantetheine attachment site JRI60_33000 PF08659 KR domain JRI60_33000 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_33000 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_33000 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_33005 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_33005 PF00550 Phosphopantetheine attachment site JRI60_33005 PF08659 KR domain JRI60_33005 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_33005 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_33005 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_33005 PF14765 Polyketide synthase dehydratase JRI60_33005 PF00698 Acyl transferase domain JRI60_33010 PF02515 CoA-transferase family III JRI60_33020 PF00486 Transcriptional regulatory protein, C terminal JRI60_33020 PF00072 Response regulator receiver domain JRI60_33030 PF02416 mttA/Hcf106 family JRI60_33035 PF00501 AMP-binding enzyme JRI60_33045 PF00140 Sigma-70 factor, region 1.2 JRI60_33045 PF04542 Sigma-70 region 2 JRI60_33045 PF04539 Sigma-70 region 3 JRI60_33045 PF04545 Sigma-70, region 4 JRI60_33050 PF02913 FAD linked oxidases, C-terminal domain JRI60_33050 PF01565 FAD binding domain JRI60_33055 PF01227 GTP cyclohydrolase I JRI60_33085 PF00005 ABC transporter JRI60_33090 PF00950 ABC 3 transport family JRI60_33095 PF06745 KaiC JRI60_33100 PF00486 Transcriptional regulatory protein, C terminal JRI60_33100 PF00072 Response regulator receiver domain JRI60_33105 PF00106 short chain dehydrogenase JRI60_33110 PF00857 Isochorismatase family JRI60_33145 PF00205 Thiamine pyrophosphate enzyme, central domain JRI60_33145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JRI60_33145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JRI60_33155 PF01027 Inhibitor of apoptosis-promoting Bax1 JRI60_33170 PF08471 Class II vitamin B12-dependent ribonucleotide reductase JRI60_33170 PF02867 Ribonucleotide reductase, barrel domain JRI60_33190 PF02397 Bacterial sugar transferase JRI60_33195 PF13439 Glycosyltransferase Family 4 JRI60_33195 PF00534 Glycosyl transferases group 1 JRI60_33200 PF00534 Glycosyl transferases group 1 JRI60_33200 PF13439 Glycosyltransferase Family 4 JRI60_33220 PF08459 UvrC Helix-hairpin-helix N-terminal JRI60_33220 PF02151 UvrB/uvrC motif JRI60_33220 PF12826 Helix-hairpin-helix motif JRI60_33220 PF01541 GIY-YIG catalytic domain JRI60_33230 PF00069 Protein kinase domain JRI60_33230 PF03793 PASTA domain JRI60_33235 PF00072 Response regulator receiver domain JRI60_33235 PF00486 Transcriptional regulatory protein, C terminal JRI60_33255 PF03739 Lipopolysaccharide export system permease LptF/LptG JRI60_33260 PF02844 Phosphoribosylglycinamide synthetase, N domain JRI60_33260 PF02843 Phosphoribosylglycinamide synthetase, C domain JRI60_33260 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JRI60_33270 PF02142 MGS-like domain JRI60_33270 PF01808 AICARFT/IMPCHase bienzyme JRI60_33275 PF03979 Sigma-70 factor, region 1.1 JRI60_33275 PF00140 Sigma-70 factor, region 1.2 JRI60_33275 PF04542 Sigma-70 region 2 JRI60_33275 PF04539 Sigma-70 region 3 JRI60_33275 PF04545 Sigma-70, region 4 JRI60_33285 PF08308 PEGA domain JRI60_33285 PF00069 Protein kinase domain JRI60_33290 PF00069 Protein kinase domain JRI60_33320 PF01066 CDP-alcohol phosphatidyltransferase JRI60_33325 PF12821 Threonine/Serine exporter, ThrE JRI60_33335 PF08543 Phosphomethylpyrimidine kinase JRI60_33340 PF01554 MatE JRI60_33345 PF00512 His Kinase A (phospho-acceptor) domain JRI60_33345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_33360 PF00069 Protein kinase domain JRI60_33365 PF00072 Response regulator receiver domain JRI60_33365 PF13188 PAS domain JRI60_33365 PF08448 PAS fold JRI60_33365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_33365 PF00512 His Kinase A (phospho-acceptor) domain JRI60_33370 PF12450 von Willebrand factor JRI60_33370 PF12034 Domain of unknown function (DUF3520) JRI60_33370 PF00092 von Willebrand factor type A domain JRI60_33375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_33375 PF00512 His Kinase A (phospho-acceptor) domain JRI60_33380 PF00486 Transcriptional regulatory protein, C terminal JRI60_33380 PF00072 Response regulator receiver domain JRI60_33385 PF17827 PrmC N-terminal domain JRI60_33385 PF05175 Methyltransferase small domain JRI60_33390 PF09587 Bacterial capsule synthesis protein PGA_cap JRI60_33395 PF01068 ATP dependent DNA ligase domain JRI60_33395 PF14743 DNA ligase OB-like domain JRI60_33405 PF00082 Subtilase family JRI60_33405 PF05922 Peptidase inhibitor I9 JRI60_33425 PF08544 GHMP kinases C terminal JRI60_33425 PF10509 Galactokinase galactose-binding signature JRI60_33425 PF00288 GHMP kinases N terminal domain JRI60_33430 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JRI60_33430 PF04616 Glycosyl hydrolases family 43 JRI60_33435 PF16369 C-terminal lipocalin-like domain JRI60_33435 PF04616 Glycosyl hydrolases family 43 JRI60_33440 PF13407 Periplasmic binding protein domain JRI60_33445 PF00005 ABC transporter JRI60_33450 PF02653 Branched-chain amino acid transport system / permease component JRI60_33455 PF02653 Branched-chain amino acid transport system / permease component JRI60_33465 PF01555 DNA methylase JRI60_33480 PF02190 ATP-dependent protease La (LON) substrate-binding domain JRI60_33480 PF05362 Lon protease (S16) C-terminal proteolytic domain JRI60_33480 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_33505 PF07714 Protein tyrosine kinase JRI60_33530 PF03050 Transposase IS66 family JRI60_33530 PF13817 IS66 C-terminal element JRI60_33530 PF13007 Transposase C of IS166 homeodomain JRI60_33530 PF13005 zinc-finger binding domain of transposase IS66 JRI60_33565 PF07714 Protein tyrosine kinase JRI60_33575 PF00069 Protein kinase domain JRI60_33595 PF04851 Type III restriction enzyme, res subunit JRI60_33595 PF08774 VRR-NUC domain JRI60_33600 PF18273 Type III R-M EcoP15I C-terminal domain JRI60_33600 PF01555 DNA methylase JRI60_33610 PF00580 UvrD/REP helicase N-terminal domain JRI60_33610 PF13361 UvrD-like helicase C-terminal domain JRI60_33620 PF02899 Phage integrase, N-terminal SAM-like domain JRI60_33620 PF00589 Phage integrase family JRI60_33630 PF03840 Preprotein translocase SecG subunit JRI60_33635 PF00121 Triosephosphate isomerase JRI60_33640 PF00162 Phosphoglycerate kinase JRI60_33645 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JRI60_33645 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JRI60_33655 PF01219 Prokaryotic diacylglycerol kinase JRI60_33675 PF17785 PUA-like domain JRI60_33675 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_33680 PF01852 START domain JRI60_33685 PF01966 HD domain JRI60_33695 PF01026 TatD related DNase JRI60_33705 PF09334 tRNA synthetases class I (M) JRI60_33705 PF01588 Putative tRNA binding domain JRI60_33715 PF01494 FAD binding domain JRI60_33720 PF00313 'Cold-shock' DNA-binding domain JRI60_33725 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_33730 PF01037 Lrp/AsnC ligand binding domain JRI60_33755 PF00672 HAMP domain JRI60_33755 PF00512 His Kinase A (phospho-acceptor) domain JRI60_33755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_33755 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_33755 PF01627 Hpt domain JRI60_33755 PF00072 Response regulator receiver domain JRI60_33760 PF00994 Probable molybdopterin binding domain JRI60_33770 PF14791 DNA polymerase beta thumb JRI60_33770 PF02811 PHP domain JRI60_33770 PF14716 Helix-hairpin-helix domain JRI60_33790 PF00012 Hsp70 protein JRI60_33795 PF00226 DnaJ domain JRI60_33795 PF01556 DnaJ C terminal domain JRI60_33795 PF00684 DnaJ central domain JRI60_33805 PF06689 ClpX C4-type zinc finger JRI60_33805 PF07724 AAA domain (Cdc48 subfamily) JRI60_33805 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_33810 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JRI60_33810 PF17810 Arginine decarboxylase helical bundle domain JRI60_33810 PF17944 Arginine decarboxylase C-terminal helical extension JRI60_33815 PF00404 Dockerin type I domain JRI60_33815 PF00657 GDSL-like Lipase/Acylhydrolase JRI60_33815 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_33815 PF17996 Carbohydrate esterase 2 N-terminal JRI60_33835 PF02368 Bacterial Ig-like domain (group 2) JRI60_33835 PF00722 Glycosyl hydrolases family 16 JRI60_33840 PF01734 Patatin-like phospholipase JRI60_33860 PF01916 Deoxyhypusine synthase JRI60_33870 PF02082 Transcriptional regulator JRI60_33875 PF02811 PHP domain JRI60_33880 PF00067 Cytochrome P450 JRI60_33885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_33890 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JRI60_33895 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JRI60_33900 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_33905 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JRI60_33910 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JRI60_33915 PF00384 Molybdopterin oxidoreductase JRI60_33915 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JRI60_33915 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal JRI60_33920 PF00146 NADH dehydrogenase JRI60_33925 PF00037 4Fe-4S binding domain JRI60_33935 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_33985 PF01476 LysM domain JRI60_33985 PF01551 Peptidase family M23 JRI60_33985 PF08525 Opacity-associated protein A N-terminal motif JRI60_33990 PF05853 beta-keto acid cleavage enzyme JRI60_33995 PF00378 Enoyl-CoA hydratase/isomerase JRI60_34000 PF00440 Bacterial regulatory proteins, tetR family JRI60_34000 PF08359 YsiA-like protein, C-terminal region JRI60_34010 PF01381 Helix-turn-helix JRI60_34040 PF08245 Mur ligase middle domain JRI60_34040 PF02875 Mur ligase family, glutamate ligase domain JRI60_34045 PF17848 Acetyl-coA carboxylase zinc finger domain JRI60_34045 PF01039 Carboxyl transferase domain JRI60_34055 PF13545 Crp-like helix-turn-helix domain JRI60_34055 PF00027 Cyclic nucleotide-binding domain JRI60_34060 PF00586 AIR synthase related protein, N-terminal domain JRI60_34060 PF02769 AIR synthase related protein, C-terminal domain JRI60_34065 PF00551 Formyl transferase JRI60_34070 PF04463 Protein of unknown function (DUF523) JRI60_34075 PF04376 Arginine-tRNA-protein transferase, N terminus JRI60_34075 PF04377 Arginine-tRNA-protein transferase, C terminus JRI60_34080 PF01494 FAD binding domain JRI60_34085 PF00440 Bacterial regulatory proteins, tetR family JRI60_34085 PF17932 Tetracyclin repressor-like, C-terminal domain JRI60_34095 PF00830 Ribosomal L28 family JRI60_34100 PF13580 SIS domain JRI60_34115 PF02798 Glutathione S-transferase, N-terminal domain JRI60_34115 PF00043 Glutathione S-transferase, C-terminal domain JRI60_34120 PF07687 Peptidase dimerisation domain JRI60_34120 PF01546 Peptidase family M20/M25/M40 JRI60_34125 PF05726 Pirin C-terminal cupin domain JRI60_34125 PF02678 Pirin JRI60_34130 PF01047 MarR family JRI60_34140 PF03702 Anhydro-N-acetylmuramic acid kinase JRI60_34145 PF00025 ADP-ribosylation factor family JRI60_34165 PF00067 Cytochrome P450 JRI60_34170 PF04072 Leucine carboxyl methyltransferase JRI60_34185 PF01494 FAD binding domain JRI60_34200 PF02798 Glutathione S-transferase, N-terminal domain JRI60_34225 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase JRI60_34235 PF00282 Pyridoxal-dependent decarboxylase conserved domain JRI60_34260 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_34265 PF00893 Small Multidrug Resistance protein JRI60_34325 PF00144 Beta-lactamase JRI60_34345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JRI60_34345 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_34380 PF03313 Serine dehydratase alpha chain JRI60_34380 PF03315 Serine dehydratase beta chain JRI60_34395 PF03065 Glycosyl hydrolase family 57 JRI60_34395 PF00041 Fibronectin type III domain JRI60_34395 PF03423 Carbohydrate binding domain (family 25) JRI60_34415 PF04185 Phosphoesterase family JRI60_34425 PF04542 Sigma-70 region 2 JRI60_34425 PF00140 Sigma-70 factor, region 1.2 JRI60_34425 PF04545 Sigma-70, region 4 JRI60_34425 PF04539 Sigma-70 region 3 JRI60_34430 PF02378 Phosphotransferase system, EIIC JRI60_34430 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JRI60_34435 PF00294 pfkB family carbohydrate kinase JRI60_34440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JRI60_34440 PF00381 PTS HPr component phosphorylation site JRI60_34440 PF02896 PEP-utilising enzyme, TIM barrel domain JRI60_34440 PF05524 PEP-utilising enzyme, N-terminal JRI60_34440 PF00391 PEP-utilising enzyme, mobile domain JRI60_34445 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JRI60_34445 PF00356 Bacterial regulatory proteins, lacI family JRI60_34455 PF01431 Peptidase family M13 JRI60_34455 PF05649 Peptidase family M13 JRI60_34460 PF00593 TonB dependent receptor JRI60_34480 PF00069 Protein kinase domain JRI60_34505 PF01177 Asp/Glu/Hydantoin racemase JRI60_34510 PF03795 YCII-related domain JRI60_34515 PF00849 RNA pseudouridylate synthase JRI60_34525 PF14403 Circularly permuted ATP-grasp type 2 JRI60_34535 PF13230 Glutamine amidotransferases class-II JRI60_34540 PF01263 Aldose 1-epimerase JRI60_34560 PF06441 Epoxide hydrolase N terminus JRI60_34565 PF00156 Phosphoribosyl transferase domain JRI60_34565 PF05139 Erythromycin esterase JRI60_34590 PF07885 Ion channel JRI60_34590 PF00027 Cyclic nucleotide-binding domain JRI60_34615 PF00106 short chain dehydrogenase JRI60_34620 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JRI60_34620 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JRI60_34620 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JRI60_34635 PF09335 SNARE associated Golgi protein JRI60_34640 PF01627 Hpt domain JRI60_34640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_34640 PF01584 CheW-like domain JRI60_34640 PF00072 Response regulator receiver domain JRI60_34650 PF00072 Response regulator receiver domain JRI60_34655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_34655 PF00672 HAMP domain JRI60_34655 PF12729 Four helix bundle sensory module for signal transduction JRI60_34660 PF01739 CheR methyltransferase, SAM binding domain JRI60_34670 PF00069 Protein kinase domain JRI60_34695 PF00749 tRNA synthetases class I (E and Q), catalytic domain JRI60_34720 PF02954 Bacterial regulatory protein, Fis family JRI60_34720 PF00072 Response regulator receiver domain JRI60_34720 PF00158 Sigma-54 interaction domain JRI60_34730 PF00989 PAS fold JRI60_34730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_34730 PF00512 His Kinase A (phospho-acceptor) domain JRI60_34745 PF00364 Biotin-requiring enzyme JRI60_34745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JRI60_34745 PF02817 e3 binding domain JRI60_34750 PF02780 Transketolase, C-terminal domain JRI60_34750 PF00364 Biotin-requiring enzyme JRI60_34750 PF02779 Transketolase, pyrimidine binding domain JRI60_34755 PF00676 Dehydrogenase E1 component JRI60_34780 PF02872 5'-nucleotidase, C-terminal domain JRI60_34780 PF00149 Calcineurin-like phosphoesterase JRI60_34805 PF01523 Putative modulator of DNA gyrase JRI60_34810 PF01523 Putative modulator of DNA gyrase JRI60_34815 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JRI60_34815 PF00437 Type II/IV secretion system protein JRI60_34830 PF03900 Porphobilinogen deaminase, C-terminal domain JRI60_34830 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JRI60_34835 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JRI60_34835 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JRI60_34835 PF01488 Shikimate / quinate 5-dehydrogenase JRI60_34840 PF01578 Cytochrome C assembly protein JRI60_34850 PF00085 Thioredoxin JRI60_34860 PF01769 Divalent cation transporter JRI60_34860 PF03448 MgtE intracellular N domain JRI60_34860 PF00571 CBS domain JRI60_34865 PF00512 His Kinase A (phospho-acceptor) domain JRI60_34865 PF08446 PAS fold JRI60_34865 PF00360 Phytochrome region JRI60_34865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_34865 PF01590 GAF domain JRI60_34870 PF01098 Cell cycle protein JRI60_34875 PF03717 Penicillin-binding Protein dimerisation domain JRI60_34875 PF00905 Penicillin binding protein transpeptidase domain JRI60_34890 PF00639 PPIC-type PPIASE domain JRI60_34890 PF09312 SurA N-terminal domain JRI60_34895 PF00990 Diguanylate cyclase, GGDEF domain JRI60_34895 PF00563 EAL domain JRI60_34895 PF13426 PAS domain JRI60_34900 PF02545 Maf-like protein JRI60_34905 PF01168 Alanine racemase, N-terminal domain JRI60_34945 PF08459 UvrC Helix-hairpin-helix N-terminal JRI60_34945 PF02151 UvrB/uvrC motif JRI60_34945 PF12826 Helix-hairpin-helix motif JRI60_34945 PF01541 GIY-YIG catalytic domain JRI60_34950 PF04851 Type III restriction enzyme, res subunit JRI60_34950 PF12344 Ultra-violet resistance protein B JRI60_34950 PF17757 UvrB interaction domain JRI60_34950 PF02151 UvrB/uvrC motif JRI60_34950 PF00271 Helicase conserved C-terminal domain JRI60_34960 PF09190 DALR domain JRI60_34960 PF01406 tRNA synthetases class I (C) catalytic domain JRI60_34965 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_34975 PF02559 CarD-like/TRCF domain JRI60_34980 PF03772 Competence protein JRI60_34980 PF00753 Metallo-beta-lactamase superfamily JRI60_35005 PF00709 Adenylosuccinate synthetase JRI60_35010 PF13361 UvrD-like helicase C-terminal domain JRI60_35010 PF12705 PD-(D/E)XK nuclease superfamily JRI60_35010 PF00580 UvrD/REP helicase N-terminal domain JRI60_35040 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_35040 PF00107 Zinc-binding dehydrogenase JRI60_35050 PF00005 ABC transporter JRI60_35055 PF01032 FecCD transport family JRI60_35060 PF01497 Periplasmic binding protein JRI60_35070 PF02311 AraC-like ligand binding domain JRI60_35070 PF12833 Helix-turn-helix domain JRI60_35090 PF03756 A-factor biosynthesis hotdog domain JRI60_35095 PF01593 Flavin containing amine oxidoreductase JRI60_35100 PF04055 Radical SAM superfamily JRI60_35100 PF06969 HemN C-terminal domain JRI60_35115 PF05593 RHS Repeat JRI60_35120 PF16884 N-terminal domain of oxidoreductase JRI60_35120 PF00107 Zinc-binding dehydrogenase JRI60_35125 PF00069 Protein kinase domain JRI60_35135 PF00665 Integrase core domain JRI60_35140 PF01695 IstB-like ATP binding protein JRI60_35165 PF03033 Glycosyltransferase family 28 N-terminal domain JRI60_35165 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase JRI60_35185 PF17755 UvrA DNA-binding domain JRI60_35185 PF17760 UvrA interaction domain JRI60_35225 PF01476 LysM domain JRI60_35225 PF05257 CHAP domain JRI60_35230 PF00069 Protein kinase domain JRI60_35245 PF00069 Protein kinase domain JRI60_35245 PF03793 PASTA domain JRI60_35260 PF00892 EamA-like transporter family JRI60_35275 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain JRI60_35275 PF04616 Glycosyl hydrolases family 43 JRI60_35315 PF07963 Prokaryotic N-terminal methylation motif JRI60_35315 PF14245 Type IV pilin PilA JRI60_35335 PF00175 Oxidoreductase NAD-binding domain JRI60_35335 PF00067 Cytochrome P450 JRI60_35335 PF00258 Flavodoxin JRI60_35335 PF00667 FAD binding domain JRI60_35350 PF00440 Bacterial regulatory proteins, tetR family JRI60_35350 PF17932 Tetracyclin repressor-like, C-terminal domain JRI60_35355 PF00108 Thiolase, N-terminal domain JRI60_35355 PF02803 Thiolase, C-terminal domain JRI60_35360 PF07690 Major Facilitator Superfamily JRI60_35400 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_35400 PF14310 Fibronectin type III-like domain JRI60_35400 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_35410 PF00082 Subtilase family JRI60_35410 PF05922 Peptidase inhibitor I9 JRI60_35415 PF00144 Beta-lactamase JRI60_35420 PF01638 HxlR-like helix-turn-helix JRI60_35435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JRI60_35435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JRI60_35440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_35440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_35445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_35445 PF00072 Response regulator receiver domain JRI60_35455 PF18029 Glyoxalase-like domain JRI60_35460 PF00199 Catalase JRI60_35460 PF18011 C-terminal domain found in long catalases JRI60_35460 PF06628 Catalase-related immune-responsive JRI60_35465 PF13243 Squalene-hopene cyclase C-terminal domain JRI60_35465 PF00432 Prenyltransferase and squalene oxidase repeat JRI60_35470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_35470 PF01590 GAF domain JRI60_35495 PF02156 Glycosyl hydrolase family 26 JRI60_35510 PF00069 Protein kinase domain JRI60_35510 PF08308 PEGA domain JRI60_35515 PF00072 Response regulator receiver domain JRI60_35515 PF00158 Sigma-54 interaction domain JRI60_35520 PF03793 PASTA domain JRI60_35520 PF00069 Protein kinase domain JRI60_35535 PF01740 STAS domain JRI60_35535 PF00916 Sulfate permease family JRI60_35540 PF13492 GAF domain JRI60_35540 PF13493 Domain of unknown function (DUF4118) JRI60_35540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_35540 PF00512 His Kinase A (phospho-acceptor) domain JRI60_35540 PF02702 Osmosensitive K+ channel His kinase sensor domain JRI60_35545 PF00072 Response regulator receiver domain JRI60_35545 PF00158 Sigma-54 interaction domain JRI60_35555 PF13492 GAF domain JRI60_35555 PF13185 GAF domain JRI60_35555 PF07730 Histidine kinase JRI60_35555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_35560 PF00171 Aldehyde dehydrogenase family JRI60_35565 PF00512 His Kinase A (phospho-acceptor) domain JRI60_35565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_35565 PF00672 HAMP domain JRI60_35570 PF00072 Response regulator receiver domain JRI60_35570 PF00486 Transcriptional regulatory protein, C terminal JRI60_35600 PF00202 Aminotransferase class-III JRI60_35610 PF01565 FAD binding domain JRI60_35610 PF02913 FAD linked oxidases, C-terminal domain JRI60_35625 PF17171 Glutathione S-transferase, C-terminal domain JRI60_35625 PF17172 Glutathione S-transferase N-terminal domain JRI60_35635 PF00069 Protein kinase domain JRI60_35635 PF03793 PASTA domain JRI60_35650 PF00942 Cellulose binding domain JRI60_35650 PF03442 Carbohydrate binding domain X2 JRI60_35655 PF03211 Pectate lyase JRI60_35660 PF00455 DeoR C terminal sensor domain JRI60_35660 PF08220 DeoR-like helix-turn-helix domain JRI60_35665 PF00293 NUDIX domain JRI60_35670 PF00544 Pectate lyase JRI60_35675 PF07690 Major Facilitator Superfamily JRI60_35675 PF00083 Sugar (and other) transporter JRI60_35715 PF00795 Carbon-nitrogen hydrolase JRI60_35720 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JRI60_35755 PF09339 IclR helix-turn-helix domain JRI60_35770 PF13396 Phospholipase_D-nuclease N-terminal JRI60_35770 PF13091 PLD-like domain JRI60_35775 PF00313 'Cold-shock' DNA-binding domain JRI60_35785 PF08264 Anticodon-binding domain of tRNA JRI60_35785 PF09334 tRNA synthetases class I (M) JRI60_35785 PF13603 Leucyl-tRNA synthetase, Domain 2 JRI60_35785 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_35825 PF00196 Bacterial regulatory proteins, luxR family JRI60_35825 PF00072 Response regulator receiver domain JRI60_35830 PF01022 Bacterial regulatory protein, arsR family JRI60_35870 PF00440 Bacterial regulatory proteins, tetR family JRI60_35880 PF00691 OmpA family JRI60_35880 PF05736 OprF membrane domain JRI60_35895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_35915 PF07694 5TMR of 5TMR-LYT JRI60_35915 PF13492 GAF domain JRI60_35915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_35915 PF06580 Histidine kinase JRI60_35920 PF00072 Response regulator receiver domain JRI60_35920 PF04397 LytTr DNA-binding domain JRI60_35980 PF01618 MotA/TolQ/ExbB proton channel family JRI60_35985 PF02472 Biopolymer transport protein ExbD/TolR JRI60_35990 PF02472 Biopolymer transport protein ExbD/TolR JRI60_36000 PF01551 Peptidase family M23 JRI60_36000 PF10145 Phage-related minor tail protein JRI60_36000 PF01464 Transglycosylase SLT domain JRI60_36025 PF00891 O-methyltransferase domain JRI60_36035 PF00512 His Kinase A (phospho-acceptor) domain JRI60_36035 PF00072 Response regulator receiver domain JRI60_36035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_36035 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_36045 PF12697 Alpha/beta hydrolase family JRI60_36065 PF00248 Aldo/keto reductase family JRI60_36070 PF00067 Cytochrome P450 JRI60_36130 PF13091 PLD-like domain JRI60_36130 PF13396 Phospholipase_D-nuclease N-terminal JRI60_36145 PF01139 tRNA-splicing ligase RtcB JRI60_36150 PF02033 Ribosome-binding factor A JRI60_36155 PF01641 SelR domain JRI60_36160 PF01555 DNA methylase JRI60_36165 PF01197 Ribosomal protein L31 JRI60_36180 PF03705 CheR methyltransferase, all-alpha domain JRI60_36180 PF01739 CheR methyltransferase, SAM binding domain JRI60_36185 PF00072 Response regulator receiver domain JRI60_36185 PF01339 CheB methylesterase JRI60_36190 PF00072 Response regulator receiver domain JRI60_36190 PF01584 CheW-like domain JRI60_36190 PF01627 Hpt domain JRI60_36190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_36195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_36200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_36215 PF00691 OmpA family JRI60_36225 PF00512 His Kinase A (phospho-acceptor) domain JRI60_36225 PF07689 KaiB domain JRI60_36225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_36240 PF01476 LysM domain JRI60_36240 PF05257 CHAP domain JRI60_36245 PF02954 Bacterial regulatory protein, Fis family JRI60_36245 PF00072 Response regulator receiver domain JRI60_36245 PF00158 Sigma-54 interaction domain JRI60_36250 PF07681 DoxX JRI60_36255 PF04542 Sigma-70 region 2 JRI60_36255 PF04545 Sigma-70, region 4 JRI60_36255 PF00140 Sigma-70 factor, region 1.2 JRI60_36260 PF00571 CBS domain JRI60_36260 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_36270 PF00005 ABC transporter JRI60_36285 PF05199 GMC oxidoreductase JRI60_36300 PF03372 Endonuclease/Exonuclease/phosphatase family JRI60_36310 PF00912 Transglycosylase JRI60_36310 PF00905 Penicillin binding protein transpeptidase domain JRI60_36310 PF17092 Penicillin-binding protein OB-like domain JRI60_36325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_36325 PF00672 HAMP domain JRI60_36325 PF00512 His Kinase A (phospho-acceptor) domain JRI60_36325 PF00989 PAS fold JRI60_36350 PF00665 Integrase core domain JRI60_36355 PF01695 IstB-like ATP binding protein JRI60_36375 PF13411 MerR HTH family regulatory protein JRI60_36375 PF00145 C-5 cytosine-specific DNA methylase JRI60_36380 PF03852 DNA mismatch endonuclease Vsr JRI60_36395 PF00271 Helicase conserved C-terminal domain JRI60_36395 PF00270 DEAD/DEAH box helicase JRI60_36425 PF03143 Elongation factor Tu C-terminal domain JRI60_36425 PF03144 Elongation factor Tu domain 2 JRI60_36425 PF00009 Elongation factor Tu GTP binding domain JRI60_36435 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JRI60_36435 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JRI60_36475 PF05736 OprF membrane domain JRI60_36475 PF00691 OmpA family JRI60_36485 PF01142 tRNA pseudouridine synthase D (TruD) JRI60_36495 PF06965 Na+/H+ antiporter 1 JRI60_36495 PF13462 Thioredoxin JRI60_36500 PF17763 Glutaminase/Asparaginase C-terminal domain JRI60_36500 PF00710 Asparaginase, N-terminal JRI60_36505 PF17151 Periplasmic sensor domain JRI60_36505 PF00990 Diguanylate cyclase, GGDEF domain JRI60_36520 PF01165 Ribosomal protein S21 JRI60_36530 PF10410 DnaB-helicase binding domain of primase JRI60_36530 PF08275 DNA primase catalytic core, N-terminal domain JRI60_36530 PF01807 CHC2 zinc finger JRI60_36535 PF04545 Sigma-70, region 4 JRI60_36535 PF04539 Sigma-70 region 3 JRI60_36535 PF04546 Sigma-70, non-essential region JRI60_36535 PF03979 Sigma-70 factor, region 1.1 JRI60_36535 PF00140 Sigma-70 factor, region 1.2 JRI60_36535 PF04542 Sigma-70 region 2 JRI60_36590 PF00313 'Cold-shock' DNA-binding domain JRI60_36605 PF00486 Transcriptional regulatory protein, C terminal JRI60_36605 PF00072 Response regulator receiver domain JRI60_36610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_36610 PF00672 HAMP domain JRI60_36610 PF00512 His Kinase A (phospho-acceptor) domain JRI60_36620 PF01061 ABC-2 type transporter JRI60_36625 PF00005 ABC transporter JRI60_36630 PF01040 UbiA prenyltransferase family JRI60_36650 PF00012 Hsp70 protein JRI60_36655 PF00012 Hsp70 protein JRI60_36660 PF00005 ABC transporter JRI60_36665 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_36670 PF13426 PAS domain JRI60_36670 PF07228 Stage II sporulation protein E (SpoIIE) JRI60_36675 PF12697 Alpha/beta hydrolase family JRI60_36700 PF01734 Patatin-like phospholipase JRI60_36710 PF00501 AMP-binding enzyme JRI60_36715 PF00561 alpha/beta hydrolase fold JRI60_36725 PF14535 AMP-binding enzyme C-terminal domain JRI60_36725 PF00501 AMP-binding enzyme JRI60_36750 PF00999 Sodium/hydrogen exchanger family JRI60_36780 PF00501 AMP-binding enzyme JRI60_36785 PF00534 Glycosyl transferases group 1 JRI60_36815 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_36825 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_36830 PF01491 Frataxin-like domain JRI60_36840 PF01765 Ribosome recycling factor JRI60_36845 PF00696 Amino acid kinase family JRI60_36850 PF00889 Elongation factor TS JRI60_36855 PF00318 Ribosomal protein S2 JRI60_36860 PF07516 SecA Wing and Scaffold domain JRI60_36860 PF07517 SecA DEAD-like domain JRI60_36860 PF02810 SEC-C motif JRI60_36860 PF01043 SecA preprotein cross-linking domain JRI60_36865 PF01728 FtsJ-like methyltransferase JRI60_36865 PF18125 RlmM ferredoxin-like domain JRI60_36875 PF01551 Peptidase family M23 JRI60_36875 PF01476 LysM domain JRI60_36875 PF08525 Opacity-associated protein A N-terminal motif JRI60_36885 PF02463 RecF/RecN/SMC N terminal domain JRI60_36890 PF00271 Helicase conserved C-terminal domain JRI60_36890 PF12419 SNF2 Helicase protein JRI60_36890 PF00176 SNF2 family N-terminal domain JRI60_36895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JRI60_36895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JRI60_36900 PF00156 Phosphoribosyl transferase domain JRI60_36910 PF00440 Bacterial regulatory proteins, tetR family JRI60_36910 PF13977 BetI-type transcriptional repressor, C-terminal JRI60_36915 PF07690 Major Facilitator Superfamily JRI60_36920 PF01467 Cytidylyltransferase-like JRI60_36930 PF00149 Calcineurin-like phosphoesterase JRI60_36930 PF02872 5'-nucleotidase, C-terminal domain JRI60_36940 PF01513 ATP-NAD kinase JRI60_36945 PF12002 MgsA AAA+ ATPase C terminal JRI60_36945 PF16193 AAA C-terminal domain JRI60_36945 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_36950 PF00158 Sigma-54 interaction domain JRI60_36950 PF00072 Response regulator receiver domain JRI60_36950 PF02954 Bacterial regulatory protein, Fis family JRI60_36955 PF13426 PAS domain JRI60_36955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_36955 PF13188 PAS domain JRI60_36955 PF00512 His Kinase A (phospho-acceptor) domain JRI60_36955 PF00989 PAS fold JRI60_36960 PF05230 MASE2 domain JRI60_36960 PF00990 Diguanylate cyclase, GGDEF domain JRI60_36965 PF00535 Glycosyl transferase family 2 JRI60_36970 PF04794 YdjC-like protein JRI60_36975 PF03551 Transcriptional regulator PadR-like family JRI60_36975 PF13847 Methyltransferase domain JRI60_36985 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain JRI60_36985 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JRI60_36985 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal JRI60_36990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_36990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_36990 PF00378 Enoyl-CoA hydratase/isomerase JRI60_36995 PF02803 Thiolase, C-terminal domain JRI60_36995 PF00108 Thiolase, N-terminal domain JRI60_37010 PF01208 Uroporphyrinogen decarboxylase (URO-D) JRI60_37035 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase JRI60_37050 PF00106 short chain dehydrogenase JRI60_37070 PF00583 Acetyltransferase (GNAT) family JRI60_37080 PF03793 PASTA domain JRI60_37080 PF00069 Protein kinase domain JRI60_37085 PF00069 Protein kinase domain JRI60_37085 PF14032 PknH-like extracellular domain JRI60_37120 PF08543 Phosphomethylpyrimidine kinase JRI60_37125 PF00069 Protein kinase domain JRI60_37125 PF03793 PASTA domain JRI60_37135 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JRI60_37135 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JRI60_37140 PF02805 Metal binding domain of Ada JRI60_37140 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_37140 PF12833 Helix-turn-helix domain JRI60_37140 PF06029 AlkA N-terminal domain JRI60_37155 PF00069 Protein kinase domain JRI60_37155 PF03793 PASTA domain JRI60_37160 PF03781 Sulfatase-modifying factor enzyme 1 JRI60_37170 PF00989 PAS fold JRI60_37170 PF00512 His Kinase A (phospho-acceptor) domain JRI60_37170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_37175 PF00158 Sigma-54 interaction domain JRI60_37175 PF02954 Bacterial regulatory protein, Fis family JRI60_37175 PF00072 Response regulator receiver domain JRI60_37205 PF02417 Chromate transporter JRI60_37210 PF00069 Protein kinase domain JRI60_37215 PF03965 Penicillinase repressor JRI60_37230 PF13533 Biotin-lipoyl like JRI60_37235 PF00873 AcrB/AcrD/AcrF family JRI60_37245 PF00534 Glycosyl transferases group 1 JRI60_37245 PF13439 Glycosyltransferase Family 4 JRI60_37255 PF10079 Bacillithiol biosynthesis BshC JRI60_37275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_37275 PF03466 LysR substrate binding domain JRI60_37285 PF00873 AcrB/AcrD/AcrF family JRI60_37290 PF00529 HlyD membrane-fusion protein of T1SS JRI60_37290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_37295 PF02321 Outer membrane efflux protein JRI60_37305 PF13520 Amino acid permease JRI60_37370 PF11808 Phosphate regulon sensor protein PhoR JRI60_37370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_37370 PF00989 PAS fold JRI60_37370 PF00512 His Kinase A (phospho-acceptor) domain JRI60_37375 PF12450 von Willebrand factor JRI60_37375 PF00092 von Willebrand factor type A domain JRI60_37375 PF12034 Domain of unknown function (DUF3520) JRI60_37390 PF01593 Flavin containing amine oxidoreductase JRI60_37395 PF13419 Haloacid dehalogenase-like hydrolase JRI60_37400 PF12419 SNF2 Helicase protein JRI60_37400 PF00271 Helicase conserved C-terminal domain JRI60_37400 PF00176 SNF2 family N-terminal domain JRI60_37405 PF12697 Alpha/beta hydrolase family JRI60_37410 PF00672 HAMP domain JRI60_37410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_37410 PF01627 Hpt domain JRI60_37410 PF00512 His Kinase A (phospho-acceptor) domain JRI60_37410 PF00072 Response regulator receiver domain JRI60_37410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_37415 PF03928 Haem-degrading JRI60_37420 PF00106 short chain dehydrogenase JRI60_37430 PF00158 Sigma-54 interaction domain JRI60_37430 PF00072 Response regulator receiver domain JRI60_37430 PF02954 Bacterial regulatory protein, Fis family JRI60_37440 PF06969 HemN C-terminal domain JRI60_37440 PF04055 Radical SAM superfamily JRI60_37445 PF12801 4Fe-4S binding domain JRI60_37445 PF13746 4Fe-4S dicluster domain JRI60_37445 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JRI60_37450 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JRI60_37450 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JRI60_37460 PF00115 Cytochrome C and Quinol oxidase polypeptide I JRI60_37470 PF00403 Heavy-metal-associated domain JRI60_37485 PF07676 WD40-like Beta Propeller Repeat JRI60_37485 PF04052 TolB amino-terminal domain JRI60_37495 PF13860 FlgD Ig-like domain JRI60_37495 PF05922 Peptidase inhibitor I9 JRI60_37495 PF00082 Subtilase family JRI60_37495 PF02225 PA domain JRI60_37505 PF00069 Protein kinase domain JRI60_37510 PF10117 McrBC 5-methylcytosine restriction system component JRI60_37515 PF12102 Domain of unknown function (DUF3578) JRI60_37515 PF07728 AAA domain (dynein-related subfamily) JRI60_37540 PF00037 4Fe-4S binding domain JRI60_37540 PF13247 4Fe-4S dicluster domain JRI60_37575 PF03150 Di-haem cytochrome c peroxidase JRI60_37575 PF00034 Cytochrome c JRI60_37595 PF00034 Cytochrome c JRI60_37595 PF03150 Di-haem cytochrome c peroxidase JRI60_37600 PF00155 Aminotransferase class I and II JRI60_37605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_37610 PF00501 AMP-binding enzyme JRI60_37610 PF00668 Condensation domain JRI60_37610 PF13193 AMP-binding enzyme C-terminal domain JRI60_37610 PF00550 Phosphopantetheine attachment site JRI60_37615 PF00550 Phosphopantetheine attachment site JRI60_37615 PF00501 AMP-binding enzyme JRI60_37615 PF13193 AMP-binding enzyme C-terminal domain JRI60_37615 PF00668 Condensation domain JRI60_37620 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain JRI60_37620 PF12706 Beta-lactamase superfamily domain JRI60_37630 PF04389 Peptidase family M28 JRI60_37650 PF00557 Metallopeptidase family M24 JRI60_37650 PF05195 Aminopeptidase P, N-terminal domain JRI60_37660 PF01207 Dihydrouridine synthase (Dus) JRI60_37670 PF05721 Phytanoyl-CoA dioxygenase (PhyH) JRI60_37675 PF00251 Glycosyl hydrolases family 32 N-terminal domain JRI60_37675 PF08244 Glycosyl hydrolases family 32 C terminal JRI60_37710 PF04101 Glycosyltransferase family 28 C-terminal domain JRI60_37720 PF00174 Oxidoreductase molybdopterin binding domain JRI60_37725 PF00462 Glutaredoxin JRI60_37730 PF01722 BolA-like protein JRI60_37735 PF02622 Uncharacterized ACR, COG1678 JRI60_37740 PF00072 Response regulator receiver domain JRI60_37755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JRI60_37760 PF02190 ATP-dependent protease La (LON) substrate-binding domain JRI60_37760 PF05362 Lon protease (S16) C-terminal proteolytic domain JRI60_37760 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_37765 PF00326 Prolyl oligopeptidase family JRI60_37765 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JRI60_37770 PF07724 AAA domain (Cdc48 subfamily) JRI60_37770 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_37770 PF06689 ClpX C4-type zinc finger JRI60_37775 PF00574 Clp protease JRI60_37780 PF05697 Bacterial trigger factor protein (TF) JRI60_37780 PF05698 Bacterial trigger factor protein (TF) C-terminus JRI60_37780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_37820 PF01725 Ham1 family JRI60_37825 PF01138 3' exoribonuclease family, domain 1 JRI60_37825 PF03725 3' exoribonuclease family, domain 2 JRI60_37830 PF11741 AMIN domain JRI60_37830 PF01520 N-acetylmuramoyl-L-alanine amidase JRI60_37840 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_37850 PF13525 Outer membrane lipoprotein JRI60_37855 PF02631 RecX family JRI60_37865 PF00437 Type II/IV secretion system protein JRI60_37870 PF00380 Ribosomal protein S9/S16 JRI60_37875 PF00572 Ribosomal protein L13 JRI60_37880 PF00580 UvrD/REP helicase N-terminal domain JRI60_37880 PF13361 UvrD-like helicase C-terminal domain JRI60_37895 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_37895 PF17785 PUA-like domain JRI60_37950 PF01026 TatD related DNase JRI60_37955 PF00899 ThiF family JRI60_37975 PF00106 short chain dehydrogenase JRI60_37980 PF14815 NUDIX domain JRI60_37980 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_37980 PF00633 Helix-hairpin-helix motif JRI60_38015 PF12697 Alpha/beta hydrolase family JRI60_38030 PF02310 B12 binding domain JRI60_38030 PF02607 B12 binding domain JRI60_38030 PF02574 Homocysteine S-methyltransferase JRI60_38030 PF02965 Vitamin B12 dependent methionine synthase, activation domain JRI60_38030 PF00809 Pterin binding enzyme JRI60_38035 PF01209 ubiE/COQ5 methyltransferase family JRI60_38050 PF13380 CoA binding domain JRI60_38065 PF00069 Protein kinase domain JRI60_38080 PF13369 Transglutaminase-like superfamily JRI60_38085 PF00293 NUDIX domain JRI60_38100 PF00501 AMP-binding enzyme JRI60_38100 PF01553 Acyltransferase JRI60_38140 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_38140 PF00107 Zinc-binding dehydrogenase JRI60_38145 PF07478 D-ala D-ala ligase C-terminus JRI60_38155 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal JRI60_38155 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal JRI60_38160 PF00107 Zinc-binding dehydrogenase JRI60_38160 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_38175 PF00440 Bacterial regulatory proteins, tetR family JRI60_38185 PF01967 MoaC family JRI60_38190 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_38195 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_38200 PF00027 Cyclic nucleotide-binding domain JRI60_38200 PF00520 Ion transport protein JRI60_38205 PF00512 His Kinase A (phospho-acceptor) domain JRI60_38205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_38205 PF00672 HAMP domain JRI60_38205 PF13426 PAS domain JRI60_38210 PF00486 Transcriptional regulatory protein, C terminal JRI60_38210 PF00072 Response regulator receiver domain JRI60_38215 PF00512 His Kinase A (phospho-acceptor) domain JRI60_38215 PF01627 Hpt domain JRI60_38215 PF00072 Response regulator receiver domain JRI60_38215 PF00672 HAMP domain JRI60_38215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_38215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_38220 PF00072 Response regulator receiver domain JRI60_38220 PF00990 Diguanylate cyclase, GGDEF domain JRI60_38220 PF00563 EAL domain JRI60_38245 PF00069 Protein kinase domain JRI60_38320 PF00741 Gas vesicle protein JRI60_38335 PF00741 Gas vesicle protein JRI60_38345 PF00741 Gas vesicle protein JRI60_38365 PF13302 Acetyltransferase (GNAT) domain JRI60_38375 PF00857 Isochorismatase family JRI60_38380 PF07969 Amidohydrolase family JRI60_38385 PF07690 Major Facilitator Superfamily JRI60_38390 PF01810 LysE type translocator JRI60_38405 PF00899 ThiF family JRI60_38405 PF00581 Rhodanese-like domain JRI60_38410 PF02581 Thiamine monophosphate synthase JRI60_38415 PF05690 Thiazole biosynthesis protein ThiG JRI60_38425 PF01266 FAD dependent oxidoreductase JRI60_38440 PF00067 Cytochrome P450 JRI60_38445 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JRI60_38455 PF01878 EVE domain JRI60_38470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_38470 PF00512 His Kinase A (phospho-acceptor) domain JRI60_38470 PF00989 PAS fold JRI60_38490 PF00248 Aldo/keto reductase family JRI60_38495 PF04002 RadC-like JAB domain JRI60_38505 PF00270 DEAD/DEAH box helicase JRI60_38505 PF00271 Helicase conserved C-terminal domain JRI60_38505 PF00570 HRDC domain JRI60_38505 PF09382 RQC domain JRI60_38505 PF16124 RecQ zinc-binding JRI60_38535 PF01553 Acyltransferase JRI60_38550 PF00069 Protein kinase domain JRI60_38550 PF03793 PASTA domain JRI60_38560 PF00535 Glycosyl transferase family 2 JRI60_38565 PF01593 Flavin containing amine oxidoreductase JRI60_38575 PF02403 Seryl-tRNA synthetase N-terminal domain JRI60_38575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JRI60_38595 PF14437 MafB19-like deaminase JRI60_38620 PF12169 DNA polymerase III subunits gamma and tau domain III JRI60_38630 PF02575 YbaB/EbfC DNA-binding family JRI60_38635 PF13662 Toprim domain JRI60_38635 PF02132 RecR protein JRI60_38640 PF00069 Protein kinase domain JRI60_38660 PF00025 ADP-ribosylation factor family JRI60_38715 PF00459 Inositol monophosphatase family JRI60_38720 PF00578 AhpC/TSA family JRI60_38725 PF02875 Mur ligase family, glutamate ligase domain JRI60_38725 PF01225 Mur ligase family, catalytic domain JRI60_38725 PF08245 Mur ligase middle domain JRI60_38730 PF00144 Beta-lactamase JRI60_38735 PF02016 LD-carboxypeptidase N-terminal domain JRI60_38735 PF17676 LD-carboxypeptidase C-terminal domain JRI60_38740 PF01189 16S rRNA methyltransferase RsmB/F JRI60_38740 PF01029 NusB family JRI60_38760 PF00082 Subtilase family JRI60_38765 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_38775 PF01609 Transposase DDE domain JRI60_38785 PF12706 Beta-lactamase superfamily domain JRI60_38815 PF01062 Bestrophin, RFP-TM, chloride channel JRI60_38825 PF01554 MatE JRI60_38880 PF13193 AMP-binding enzyme C-terminal domain JRI60_38880 PF00668 Condensation domain JRI60_38880 PF00501 AMP-binding enzyme JRI60_38880 PF00975 Thioesterase domain JRI60_38880 PF00550 Phosphopantetheine attachment site JRI60_38900 PF00668 Condensation domain JRI60_38900 PF00501 AMP-binding enzyme JRI60_38900 PF14765 Polyketide synthase dehydratase JRI60_38900 PF00550 Phosphopantetheine attachment site JRI60_38900 PF08659 KR domain JRI60_38900 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_38900 PF13193 AMP-binding enzyme C-terminal domain JRI60_38900 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_38900 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_38905 PF00891 O-methyltransferase domain JRI60_38915 PF04616 Glycosyl hydrolases family 43 JRI60_38935 PF00155 Aminotransferase class I and II JRI60_38945 PF00266 Aminotransferase class-V JRI60_38950 PF00248 Aldo/keto reductase family JRI60_38955 PF14760 Rnk N-terminus JRI60_38955 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_38960 PF00425 chorismate binding enzyme JRI60_38960 PF04715 Anthranilate synthase component I, N terminal region JRI60_38965 PF00117 Glutamine amidotransferase class-I JRI60_38975 PF00512 His Kinase A (phospho-acceptor) domain JRI60_38975 PF07689 KaiB domain JRI60_38975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_38980 PF00849 RNA pseudouridylate synthase JRI60_38980 PF01479 S4 domain JRI60_39000 PF13302 Acetyltransferase (GNAT) domain JRI60_39025 PF00069 Protein kinase domain JRI60_39055 PF04235 Protein of unknown function (DUF418) JRI60_39060 PF06965 Na+/H+ antiporter 1 JRI60_39060 PF13462 Thioredoxin JRI60_39070 PF01625 Peptide methionine sulfoxide reductase JRI60_39095 PF03594 Benzoate membrane transport protein JRI60_39105 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_39105 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_39105 PF01799 [2Fe-2S] binding domain JRI60_39105 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_39110 PF01799 [2Fe-2S] binding domain JRI60_39110 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_39140 PF00512 His Kinase A (phospho-acceptor) domain JRI60_39140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_39155 PF13193 AMP-binding enzyme C-terminal domain JRI60_39155 PF00501 AMP-binding enzyme JRI60_39160 PF07690 Major Facilitator Superfamily JRI60_39205 PF16363 GDP-mannose 4,6 dehydratase JRI60_39210 PF02463 RecF/RecN/SMC N terminal domain JRI60_39210 PF06470 SMC proteins Flexible Hinge Domain JRI60_39220 PF01551 Peptidase family M23 JRI60_39220 PF10145 Phage-related minor tail protein JRI60_39220 PF01464 Transglycosylase SLT domain JRI60_39235 PF02954 Bacterial regulatory protein, Fis family JRI60_39235 PF01590 GAF domain JRI60_39235 PF00158 Sigma-54 interaction domain JRI60_39240 PF00578 AhpC/TSA family JRI60_39245 PF02627 Carboxymuconolactone decarboxylase family JRI60_39250 PF00210 Ferritin-like domain JRI60_39260 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JRI60_39260 PF00326 Prolyl oligopeptidase family JRI60_39265 PF01431 Peptidase family M13 JRI60_39265 PF05649 Peptidase family M13 JRI60_39290 PF17932 Tetracyclin repressor-like, C-terminal domain JRI60_39290 PF00440 Bacterial regulatory proteins, tetR family JRI60_39295 PF00561 alpha/beta hydrolase fold JRI60_39300 PF00561 alpha/beta hydrolase fold JRI60_39305 PF00155 Aminotransferase class I and II JRI60_39315 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JRI60_39315 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JRI60_39325 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JRI60_39325 PF01488 Shikimate / quinate 5-dehydrogenase JRI60_39325 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JRI60_39330 PF00392 Bacterial regulatory proteins, gntR family JRI60_39330 PF00155 Aminotransferase class I and II JRI60_39340 PF00701 Dihydrodipicolinate synthetase family JRI60_39345 PF08534 Redoxin JRI60_39355 PF13482 RNase_H superfamily JRI60_39360 PF00270 DEAD/DEAH box helicase JRI60_39360 PF00271 Helicase conserved C-terminal domain JRI60_39360 PF09369 Domain of unknown function (DUF1998) JRI60_39365 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_39390 PF00355 Rieske [2Fe-2S] domain JRI60_39390 PF01266 FAD dependent oxidoreductase JRI60_39395 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_39395 PF00072 Response regulator receiver domain JRI60_39395 PF01627 Hpt domain JRI60_39395 PF00672 HAMP domain JRI60_39395 PF00512 His Kinase A (phospho-acceptor) domain JRI60_39395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_39400 PF00486 Transcriptional regulatory protein, C terminal JRI60_39400 PF00072 Response regulator receiver domain JRI60_39405 PF13411 MerR HTH family regulatory protein JRI60_39425 PF13732 Domain of unknown function (DUF4162) JRI60_39425 PF00005 ABC transporter JRI60_39430 PF08338 Domain of unknown function (DUF1731) JRI60_39430 PF01370 NAD dependent epimerase/dehydratase family JRI60_39435 PF01300 Telomere recombination JRI60_39435 PF03481 Putative GTP-binding controlling metal-binding JRI60_39445 PF00762 Ferrochelatase JRI60_39450 PF04379 ApaG domain JRI60_39455 PF03741 Integral membrane protein TerC family JRI60_39460 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_39460 PF00128 Alpha amylase, catalytic domain JRI60_39465 PF00128 Alpha amylase, catalytic domain JRI60_39475 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JRI60_39495 PF00501 AMP-binding enzyme JRI60_39495 PF13193 AMP-binding enzyme C-terminal domain JRI60_39500 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JRI60_39505 PF00990 Diguanylate cyclase, GGDEF domain JRI60_39510 PF00483 Nucleotidyl transferase JRI60_39520 PF01139 tRNA-splicing ligase RtcB JRI60_39525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_39525 PF18698 Histidine kinase sensor domain JRI60_39525 PF00989 PAS fold JRI60_39525 PF00672 HAMP domain JRI60_39525 PF00512 His Kinase A (phospho-acceptor) domain JRI60_39530 PF00962 Adenosine/AMP deaminase JRI60_39545 PF13361 UvrD-like helicase C-terminal domain JRI60_39545 PF00580 UvrD/REP helicase N-terminal domain JRI60_39575 PF13460 NAD(P)H-binding JRI60_39580 PF05736 OprF membrane domain JRI60_39580 PF00691 OmpA family JRI60_39595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_39595 PF00072 Response regulator receiver domain JRI60_39595 PF00512 His Kinase A (phospho-acceptor) domain JRI60_39595 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_39600 PF00149 Calcineurin-like phosphoesterase JRI60_39610 PF00069 Protein kinase domain JRI60_39610 PF07238 PilZ domain JRI60_39620 PF00512 His Kinase A (phospho-acceptor) domain JRI60_39620 PF00672 HAMP domain JRI60_39620 PF18698 Histidine kinase sensor domain JRI60_39620 PF00989 PAS fold JRI60_39620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_39625 PF00072 Response regulator receiver domain JRI60_39630 PF01590 GAF domain JRI60_39630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_39630 PF00360 Phytochrome region JRI60_39630 PF00512 His Kinase A (phospho-acceptor) domain JRI60_39630 PF08446 PAS fold JRI60_39635 PF00072 Response regulator receiver domain JRI60_39635 PF08448 PAS fold JRI60_39635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_39635 PF13426 PAS domain JRI60_39635 PF00512 His Kinase A (phospho-acceptor) domain JRI60_39705 PF00664 ABC transporter transmembrane region JRI60_39705 PF00005 ABC transporter JRI60_39705 PF03412 Peptidase C39 family JRI60_39715 PF08443 RimK-like ATP-grasp domain JRI60_39715 PF18030 RimK PreATP-grasp domain JRI60_39815 PF00550 Phosphopantetheine attachment site JRI60_39815 PF00668 Condensation domain JRI60_39815 PF07993 Male sterility protein JRI60_39815 PF00501 AMP-binding enzyme JRI60_39815 PF13193 AMP-binding enzyme C-terminal domain JRI60_39820 PF00550 Phosphopantetheine attachment site JRI60_39820 PF13193 AMP-binding enzyme C-terminal domain JRI60_39820 PF00668 Condensation domain JRI60_39820 PF00501 AMP-binding enzyme JRI60_39830 PF04389 Peptidase family M28 JRI60_39850 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_39850 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_39850 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_39850 PF17871 AAA lid domain JRI60_39850 PF07724 AAA domain (Cdc48 subfamily) JRI60_39875 PF07691 PA14 domain JRI60_39875 PF12791 Anti-sigma factor N-terminus JRI60_39880 PF01960 ArgJ family JRI60_39895 PF00561 alpha/beta hydrolase fold JRI60_39900 PF00106 short chain dehydrogenase JRI60_39910 PF00485 Phosphoribulokinase / Uridine kinase family JRI60_39975 PF07728 AAA domain (dynein-related subfamily) JRI60_39985 PF05762 VWA domain containing CoxE-like protein JRI60_39990 PF04072 Leucine carboxyl methyltransferase JRI60_40010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_40010 PF00512 His Kinase A (phospho-acceptor) domain JRI60_40035 PF00512 His Kinase A (phospho-acceptor) domain JRI60_40035 PF00072 Response regulator receiver domain JRI60_40035 PF13188 PAS domain JRI60_40035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_40035 PF08448 PAS fold JRI60_40040 PF00072 Response regulator receiver domain JRI60_40055 PF00753 Metallo-beta-lactamase superfamily JRI60_40055 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JRI60_40055 PF17770 Ribonuclease J C-terminal domain JRI60_40060 PF04461 Protein of unknown function (DUF520) JRI60_40070 PF18693 TRAM domain JRI60_40070 PF04055 Radical SAM superfamily JRI60_40070 PF00919 Uncharacterized protein family UPF0004 JRI60_40110 PF01926 50S ribosome-binding GTPase JRI60_40110 PF01018 GTP1/OBG JRI60_40115 PF01016 Ribosomal L27 protein JRI60_40120 PF00829 Ribosomal prokaryotic L21 protein JRI60_40140 PF00512 His Kinase A (phospho-acceptor) domain JRI60_40140 PF13426 PAS domain JRI60_40140 PF08447 PAS fold JRI60_40140 PF00989 PAS fold JRI60_40140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_40140 PF13493 Domain of unknown function (DUF4118) JRI60_40150 PF00512 His Kinase A (phospho-acceptor) domain JRI60_40150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_40180 PF01546 Peptidase family M20/M25/M40 JRI60_40180 PF07687 Peptidase dimerisation domain JRI60_40185 PF03466 LysR substrate binding domain JRI60_40185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_40205 PF00072 Response regulator receiver domain JRI60_40205 PF04397 LytTr DNA-binding domain JRI60_40210 PF07694 5TMR of 5TMR-LYT JRI60_40210 PF06580 Histidine kinase JRI60_40215 PF02637 GatB domain JRI60_40215 PF02934 GatB/GatE catalytic domain JRI60_40220 PF01425 Amidase JRI60_40225 PF02686 Glu-tRNAGln amidotransferase C subunit JRI60_40235 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JRI60_40235 PF17854 FtsK alpha domain JRI60_40235 PF09397 Ftsk gamma domain JRI60_40235 PF01580 FtsK/SpoIIIE family JRI60_40245 PF00691 OmpA family JRI60_40260 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_40260 PF02926 THUMP domain JRI60_40260 PF01170 Putative RNA methylase family UPF0020 JRI60_40265 PF02660 Glycerol-3-phosphate acyltransferase JRI60_40300 PF00593 TonB dependent receptor JRI60_40310 PF01618 MotA/TolQ/ExbB proton channel family JRI60_40315 PF02472 Biopolymer transport protein ExbD/TolR JRI60_40320 PF02472 Biopolymer transport protein ExbD/TolR JRI60_40335 PF01078 Magnesium chelatase, subunit ChlI JRI60_40335 PF13335 Magnesium chelatase, subunit ChlI C-terminal JRI60_40340 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_40345 PF01553 Acyltransferase JRI60_40350 PF00154 recA bacterial DNA recombination protein JRI60_40365 PF00994 Probable molybdopterin binding domain JRI60_40365 PF02464 Competence-damaged protein JRI60_40365 PF18146 Damage-inducible protein CinA KH domain JRI60_40370 PF01066 CDP-alcohol phosphatidyltransferase JRI60_40385 PF00216 Bacterial DNA-binding protein JRI60_40390 PF01551 Peptidase family M23 JRI60_40390 PF08525 Opacity-associated protein A N-terminal motif JRI60_40390 PF01476 LysM domain JRI60_40395 PF01212 Beta-eliminating lyase JRI60_40400 PF00633 Helix-hairpin-helix motif JRI60_40400 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_40405 PF01327 Polypeptide deformylase JRI60_40415 PF00684 DnaJ central domain JRI60_40415 PF01556 DnaJ C terminal domain JRI60_40415 PF00226 DnaJ domain JRI60_40420 PF00271 Helicase conserved C-terminal domain JRI60_40420 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JRI60_40420 PF04851 Type III restriction enzyme, res subunit JRI60_40420 PF17764 3′ DNA-binding domain (3′BD) JRI60_40420 PF18074 Primosomal protein N C-terminal domain JRI60_40450 PF01479 S4 domain JRI60_40450 PF00849 RNA pseudouridylate synthase JRI60_40490 PF00535 Glycosyl transferase family 2 JRI60_40510 PF01479 S4 domain JRI60_40510 PF00849 RNA pseudouridylate synthase JRI60_40560 PF00672 HAMP domain JRI60_40560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_40560 PF18698 Histidine kinase sensor domain JRI60_40560 PF00512 His Kinase A (phospho-acceptor) domain JRI60_40560 PF00989 PAS fold JRI60_40565 PF06745 KaiC JRI60_40575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_40575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_40575 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_40605 PF06441 Epoxide hydrolase N terminus JRI60_40630 PF00672 HAMP domain JRI60_40630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_40630 PF00512 His Kinase A (phospho-acceptor) domain JRI60_40635 PF00069 Protein kinase domain JRI60_40640 PF02954 Bacterial regulatory protein, Fis family JRI60_40640 PF00072 Response regulator receiver domain JRI60_40640 PF00158 Sigma-54 interaction domain JRI60_40645 PF00465 Iron-containing alcohol dehydrogenase JRI60_40650 PF03061 Thioesterase superfamily JRI60_40665 PF03793 PASTA domain JRI60_40665 PF00069 Protein kinase domain JRI60_40710 PF03466 LysR substrate binding domain JRI60_40710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_40725 PF00069 Protein kinase domain JRI60_40730 PF18698 Histidine kinase sensor domain JRI60_40730 PF00989 PAS fold JRI60_40730 PF00512 His Kinase A (phospho-acceptor) domain JRI60_40730 PF00672 HAMP domain JRI60_40730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_40735 PF01189 16S rRNA methyltransferase RsmB/F JRI60_40735 PF01029 NusB family JRI60_40740 PF01220 Dehydroquinase class II JRI60_40745 PF00551 Formyl transferase JRI60_40745 PF02911 Formyl transferase, C-terminal domain JRI60_40770 PF07732 Multicopper oxidase JRI60_40770 PF07731 Multicopper oxidase JRI60_40805 PF01740 STAS domain JRI60_40810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_40810 PF00128 Alpha amylase, catalytic domain JRI60_40815 PF01740 STAS domain JRI60_40835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_40835 PF00183 Hsp90 protein JRI60_40845 PF00248 Aldo/keto reductase family JRI60_40850 PF02954 Bacterial regulatory protein, Fis family JRI60_40850 PF00072 Response regulator receiver domain JRI60_40850 PF00158 Sigma-54 interaction domain JRI60_40855 PF00072 Response regulator receiver domain JRI60_40855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_40855 PF00512 His Kinase A (phospho-acceptor) domain JRI60_40855 PF08448 PAS fold JRI60_40855 PF13188 PAS domain JRI60_40860 PF17674 HHH domain JRI60_40860 PF00575 S1 RNA binding domain JRI60_40860 PF09371 Tex-like protein N-terminal domain JRI60_40860 PF16921 Tex protein YqgF-like domain JRI60_40870 PF00593 TonB dependent receptor JRI60_40880 PF01070 FMN-dependent dehydrogenase JRI60_40885 PF01235 Sodium:alanine symporter family JRI60_40890 PF02463 RecF/RecN/SMC N terminal domain JRI60_40905 PF13378 Enolase C-terminal domain-like JRI60_40905 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JRI60_40910 PF07687 Peptidase dimerisation domain JRI60_40910 PF01546 Peptidase family M20/M25/M40 JRI60_40930 PF00501 AMP-binding enzyme JRI60_40930 PF00668 Condensation domain JRI60_40930 PF00550 Phosphopantetheine attachment site JRI60_40930 PF13193 AMP-binding enzyme C-terminal domain JRI60_40935 PF00005 ABC transporter JRI60_40935 PF00664 ABC transporter transmembrane region JRI60_40940 PF00154 recA bacterial DNA recombination protein JRI60_40950 PF00069 Protein kinase domain JRI60_40955 PF03477 ATP cone domain JRI60_40955 PF02867 Ribonucleotide reductase, barrel domain JRI60_40955 PF00317 Ribonucleotide reductase, all-alpha domain JRI60_40960 PF00268 Ribonucleotide reductase, small chain JRI60_40970 PF01380 SIS domain JRI60_40975 PF12804 MobA-like NTP transferase domain JRI60_40975 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_41010 PF00158 Sigma-54 interaction domain JRI60_41010 PF00072 Response regulator receiver domain JRI60_41010 PF02954 Bacterial regulatory protein, Fis family JRI60_41015 PF00551 Formyl transferase JRI60_41015 PF01842 ACT domain JRI60_41020 PF00005 ABC transporter JRI60_41030 PF00561 alpha/beta hydrolase fold JRI60_41080 PF00271 Helicase conserved C-terminal domain JRI60_41080 PF03880 DbpA RNA binding domain JRI60_41080 PF00270 DEAD/DEAH box helicase JRI60_41090 PF02678 Pirin JRI60_41090 PF17954 Quercetinase C-terminal cupin domain JRI60_41095 PF04264 YceI-like domain JRI60_41110 PF00472 RF-1 domain JRI60_41110 PF03462 PCRF domain JRI60_41115 PF04607 Region found in RelA / SpoT proteins JRI60_41115 PF13291 ACT domain JRI60_41115 PF02824 TGS domain JRI60_41125 PF00694 Aconitase C-terminal domain JRI60_41125 PF00330 Aconitase family (aconitate hydratase) JRI60_41135 PF04679 ATP dependent DNA ligase C terminal region JRI60_41135 PF13298 DNA polymerase Ligase (LigD) JRI60_41135 PF01068 ATP dependent DNA ligase domain JRI60_41140 PF02954 Bacterial regulatory protein, Fis family JRI60_41140 PF00072 Response regulator receiver domain JRI60_41140 PF00158 Sigma-54 interaction domain JRI60_41150 PF00069 Protein kinase domain JRI60_41155 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_41155 PF13191 AAA ATPase domain JRI60_41165 PF00672 HAMP domain JRI60_41165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_41165 PF00512 His Kinase A (phospho-acceptor) domain JRI60_41180 PF03060 Nitronate monooxygenase JRI60_41190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_41190 PF03466 LysR substrate binding domain JRI60_41205 PF00069 Protein kinase domain JRI60_41205 PF03793 PASTA domain JRI60_41215 PF01625 Peptide methionine sulfoxide reductase JRI60_41230 PF00106 short chain dehydrogenase JRI60_41235 PF03466 LysR substrate binding domain JRI60_41235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_41250 PF02706 Chain length determinant protein JRI60_41250 PF13807 G-rich domain on putative tyrosine kinase JRI60_41250 PF13614 AAA domain JRI60_41265 PF00501 AMP-binding enzyme JRI60_41265 PF16177 Acetyl-coenzyme A synthetase N-terminus JRI60_41265 PF13193 AMP-binding enzyme C-terminal domain JRI60_41270 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_41270 PF00672 HAMP domain JRI60_41270 PF02743 Cache domain JRI60_41295 PF04115 Ureidoglycolate lyase JRI60_41300 PF13396 Phospholipase_D-nuclease N-terminal JRI60_41300 PF13091 PLD-like domain JRI60_41305 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_41325 PF00696 Amino acid kinase family JRI60_41325 PF01472 PUA domain JRI60_41340 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JRI60_41340 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JRI60_41350 PF00989 PAS fold JRI60_41350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_41350 PF00512 His Kinase A (phospho-acceptor) domain JRI60_41350 PF16736 Single Cache-like JRI60_41355 PF00486 Transcriptional regulatory protein, C terminal JRI60_41355 PF00072 Response regulator receiver domain JRI60_41380 PF01979 Amidohydrolase family JRI60_41385 PF00158 Sigma-54 interaction domain JRI60_41385 PF01590 GAF domain JRI60_41385 PF02954 Bacterial regulatory protein, Fis family JRI60_41390 PF00144 Beta-lactamase JRI60_41405 PF12146 Serine aminopeptidase, S33 JRI60_41430 PF00732 GMC oxidoreductase JRI60_41430 PF05199 GMC oxidoreductase JRI60_41435 PF00069 Protein kinase domain JRI60_41435 PF03793 PASTA domain JRI60_41455 PF00403 Heavy-metal-associated domain JRI60_41460 PF01979 Amidohydrolase family JRI60_41480 PF00264 Common central domain of tyrosinase JRI60_41490 PF00361 Proton-conducting membrane transporter JRI60_41520 PF13180 PDZ domain JRI60_41615 PF00072 Response regulator receiver domain JRI60_41615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_41615 PF00512 His Kinase A (phospho-acceptor) domain JRI60_41615 PF17149 Periplasmic sensor domain found in signal transduction proteins JRI60_41615 PF00672 HAMP domain JRI60_41615 PF01627 Hpt domain JRI60_41620 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_41625 PF01925 Sulfite exporter TauE/SafE JRI60_41630 PF03466 LysR substrate binding domain JRI60_41630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_41635 PF00578 AhpC/TSA family JRI60_41645 PF12833 Helix-turn-helix domain JRI60_41645 PF14525 AraC-binding-like domain JRI60_41655 PF00561 alpha/beta hydrolase fold JRI60_41660 PF00378 Enoyl-CoA hydratase/isomerase JRI60_41665 PF00115 Cytochrome C and Quinol oxidase polypeptide I JRI60_41680 PF00686 Starch binding domain JRI60_41680 PF00128 Alpha amylase, catalytic domain JRI60_41680 PF09081 Domain of unknown function (DUF1921) JRI60_41700 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JRI60_41705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_41705 PF00512 His Kinase A (phospho-acceptor) domain JRI60_41705 PF00989 PAS fold JRI60_41710 PF00512 His Kinase A (phospho-acceptor) domain JRI60_41710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_41715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_41715 PF08447 PAS fold JRI60_41715 PF08448 PAS fold JRI60_41725 PF00128 Alpha amylase, catalytic domain JRI60_41725 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_41745 PF00999 Sodium/hydrogen exchanger family JRI60_41745 PF02254 TrkA-N domain JRI60_41755 PF00571 CBS domain JRI60_41755 PF03471 Transporter associated domain JRI60_41770 PF03793 PASTA domain JRI60_41770 PF00069 Protein kinase domain JRI60_41775 PF08323 Starch synthase catalytic domain JRI60_41775 PF00534 Glycosyl transferases group 1 JRI60_41780 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JRI60_41780 PF01243 Pyridoxamine 5'-phosphate oxidase JRI60_41785 PF00106 short chain dehydrogenase JRI60_41790 PF01593 Flavin containing amine oxidoreductase JRI60_41795 PF07694 5TMR of 5TMR-LYT JRI60_41795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_41795 PF06580 Histidine kinase JRI60_41810 PF01048 Phosphorylase superfamily JRI60_41820 PF01695 IstB-like ATP binding protein JRI60_41825 PF00665 Integrase core domain JRI60_41840 PF00144 Beta-lactamase JRI60_41865 PF00067 Cytochrome P450 JRI60_41870 PF00067 Cytochrome P450 JRI60_41885 PF00881 Nitroreductase family JRI60_41890 PF00296 Luciferase-like monooxygenase JRI60_41900 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_41900 PF03413 Peptidase propeptide and YPEB domain JRI60_41900 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_41900 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_41900 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_41940 PF00753 Metallo-beta-lactamase superfamily JRI60_41940 PF10996 Beta-Casp domain JRI60_41940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JRI60_41955 PF00106 short chain dehydrogenase JRI60_41960 PF06719 AraC-type transcriptional regulator N-terminus JRI60_41960 PF12833 Helix-turn-helix domain JRI60_41965 PF12708 Pectate lyase superfamily protein JRI60_41965 PF13229 Right handed beta helix region JRI60_41965 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) JRI60_41970 PF00106 short chain dehydrogenase JRI60_41975 PF00482 Type II secretion system (T2SS), protein F JRI60_41985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_41990 PF00480 ROK family JRI60_42005 PF04675 DNA ligase N terminus JRI60_42005 PF01068 ATP dependent DNA ligase domain JRI60_42005 PF04679 ATP dependent DNA ligase C terminal region JRI60_42010 PF00270 DEAD/DEAH box helicase JRI60_42010 PF08494 DEAD/H associated JRI60_42010 PF00271 Helicase conserved C-terminal domain JRI60_42020 PF00067 Cytochrome P450 JRI60_42025 PF04397 LytTr DNA-binding domain JRI60_42025 PF00072 Response regulator receiver domain JRI60_42040 PF00990 Diguanylate cyclase, GGDEF domain JRI60_42040 PF07694 5TMR of 5TMR-LYT JRI60_42065 PF04055 Radical SAM superfamily JRI60_42075 PF01494 FAD binding domain JRI60_42090 PF00749 tRNA synthetases class I (E and Q), catalytic domain JRI60_42110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42110 PF00672 HAMP domain JRI60_42110 PF00989 PAS fold JRI60_42110 PF18698 Histidine kinase sensor domain JRI60_42110 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42115 PF02080 TrkA-C domain JRI60_42115 PF03600 Citrate transporter JRI60_42120 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain JRI60_42120 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain JRI60_42140 PF07963 Prokaryotic N-terminal methylation motif JRI60_42140 PF08334 Type II secretion system (T2SS), protein G JRI60_42145 PF14765 Polyketide synthase dehydratase JRI60_42145 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_42145 PF00698 Acyl transferase domain JRI60_42145 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_42145 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_42145 PF00550 Phosphopantetheine attachment site JRI60_42145 PF08659 KR domain JRI60_42155 PF14765 Polyketide synthase dehydratase JRI60_42155 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_42155 PF00550 Phosphopantetheine attachment site JRI60_42155 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_42155 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_42155 PF08659 KR domain JRI60_42165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_42165 PF00672 HAMP domain JRI60_42175 PF03169 OPT oligopeptide transporter protein JRI60_42180 PF01590 GAF domain JRI60_42180 PF00360 Phytochrome region JRI60_42180 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42180 PF08446 PAS fold JRI60_42180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42185 PF00072 Response regulator receiver domain JRI60_42190 PF00072 Response regulator receiver domain JRI60_42190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42190 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42190 PF13188 PAS domain JRI60_42190 PF08448 PAS fold JRI60_42200 PF00155 Aminotransferase class I and II JRI60_42215 PF00155 Aminotransferase class I and II JRI60_42220 PF06968 Biotin and Thiamin Synthesis associated domain JRI60_42220 PF04055 Radical SAM superfamily JRI60_42225 PF04226 Transglycosylase associated protein JRI60_42230 PF18073 Rubredoxin metal binding domain JRI60_42280 PF00069 Protein kinase domain JRI60_42285 PF01341 Glycosyl hydrolases family 6 JRI60_42285 PF00041 Fibronectin type III domain JRI60_42285 PF00553 Cellulose binding domain JRI60_42290 PF02557 D-alanyl-D-alanine carboxypeptidase JRI60_42295 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_42295 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_42295 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_42295 PF01799 [2Fe-2S] binding domain JRI60_42300 PF01799 [2Fe-2S] binding domain JRI60_42300 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_42305 PF03450 CO dehydrogenase flavoprotein C-terminal domain JRI60_42305 PF00941 FAD binding domain in molybdopterin dehydrogenase JRI60_42310 PF04754 Putative transposase, YhgA-like JRI60_42315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42315 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42315 PF00989 PAS fold JRI60_42320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42320 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42320 PF08446 PAS fold JRI60_42320 PF00360 Phytochrome region JRI60_42320 PF01590 GAF domain JRI60_42325 PF00072 Response regulator receiver domain JRI60_42330 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42330 PF07689 KaiB domain JRI60_42345 PF02954 Bacterial regulatory protein, Fis family JRI60_42345 PF00072 Response regulator receiver domain JRI60_42345 PF00158 Sigma-54 interaction domain JRI60_42370 PF00171 Aldehyde dehydrogenase family JRI60_42380 PF02590 Predicted SPOUT methyltransferase JRI60_42385 PF03600 Citrate transporter JRI60_42385 PF02080 TrkA-C domain JRI60_42395 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_42395 PF14760 Rnk N-terminus JRI60_42410 PF00072 Response regulator receiver domain JRI60_42410 PF13188 PAS domain JRI60_42410 PF08448 PAS fold JRI60_42410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42410 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42415 PF00365 Phosphofructokinase JRI60_42425 PF00156 Phosphoribosyl transferase domain JRI60_42435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42435 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42440 PF00982 Glycosyltransferase family 20 JRI60_42450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42450 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42450 PF00672 HAMP domain JRI60_42465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42465 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42465 PF16736 Single Cache-like JRI60_42465 PF00989 PAS fold JRI60_42470 PF00072 Response regulator receiver domain JRI60_42470 PF02954 Bacterial regulatory protein, Fis family JRI60_42470 PF00158 Sigma-54 interaction domain JRI60_42475 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42475 PF07689 KaiB domain JRI60_42475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42500 PF00743 Flavin-binding monooxygenase-like JRI60_42525 PF02675 S-adenosylmethionine decarboxylase JRI60_42545 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JRI60_42555 PF01894 Uncharacterised protein family UPF0047 JRI60_42560 PF00072 Response regulator receiver domain JRI60_42560 PF00158 Sigma-54 interaction domain JRI60_42560 PF02954 Bacterial regulatory protein, Fis family JRI60_42565 PF01590 GAF domain JRI60_42565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42565 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42565 PF08446 PAS fold JRI60_42565 PF00360 Phytochrome region JRI60_42580 PF08447 PAS fold JRI60_42580 PF00990 Diguanylate cyclase, GGDEF domain JRI60_42580 PF08448 PAS fold JRI60_42580 PF00563 EAL domain JRI60_42590 PF12867 DinB superfamily JRI60_42590 PF03781 Sulfatase-modifying factor enzyme 1 JRI60_42600 PF00069 Protein kinase domain JRI60_42600 PF03793 PASTA domain JRI60_42630 PF00202 Aminotransferase class-III JRI60_42635 PF00696 Amino acid kinase family JRI60_42645 PF00378 Enoyl-CoA hydratase/isomerase JRI60_42655 PF01883 Iron-sulfur cluster assembly protein JRI60_42660 PF01592 NifU-like N terminal domain JRI60_42665 PF00266 Aminotransferase class-V JRI60_42670 PF01458 Uncharacterized protein family (UPF0051) JRI60_42675 PF00005 ABC transporter JRI60_42680 PF01458 Uncharacterized protein family (UPF0051) JRI60_42685 PF02082 Transcriptional regulator JRI60_42700 PF13458 Periplasmic binding protein JRI60_42740 PF05736 OprF membrane domain JRI60_42740 PF00691 OmpA family JRI60_42755 PF04055 Radical SAM superfamily JRI60_42755 PF06969 HemN C-terminal domain JRI60_42765 PF00675 Insulinase (Peptidase family M16) JRI60_42765 PF05193 Peptidase M16 inactive domain JRI60_42820 PF04452 RNA methyltransferase JRI60_42830 PF06271 RDD family JRI60_42840 PF00512 His Kinase A (phospho-acceptor) domain JRI60_42840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_42870 PF01596 O-methyltransferase JRI60_42875 PF05962 HutD JRI60_42890 PF02954 Bacterial regulatory protein, Fis family JRI60_42890 PF00072 Response regulator receiver domain JRI60_42890 PF00158 Sigma-54 interaction domain JRI60_42905 PF03193 RsgA GTPase JRI60_42915 PF06974 Protein of unknown function (DUF1298) JRI60_42915 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JRI60_42940 PF01494 FAD binding domain JRI60_42970 PF01432 Peptidase family M3 JRI60_43005 PF01039 Carboxyl transferase domain JRI60_43015 PF02785 Biotin carboxylase C-terminal domain JRI60_43015 PF00289 Biotin carboxylase, N-terminal domain JRI60_43015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_43020 PF00364 Biotin-requiring enzyme JRI60_43020 PF00682 HMGL-like JRI60_43020 PF02436 Conserved carboxylase domain JRI60_43025 PF01642 Methylmalonyl-CoA mutase JRI60_43025 PF02310 B12 binding domain JRI60_43045 PF01925 Sulfite exporter TauE/SafE JRI60_43055 PF01556 DnaJ C terminal domain JRI60_43055 PF00226 DnaJ domain JRI60_43060 PF01985 CRS1 / YhbY (CRM) domain JRI60_43070 PF00156 Phosphoribosyl transferase domain JRI60_43075 PF13302 Acetyltransferase (GNAT) domain JRI60_43075 PF13673 Acetyltransferase (GNAT) domain JRI60_43075 PF03352 Methyladenine glycosylase JRI60_43075 PF00958 GMP synthase C terminal domain JRI60_43075 PF00117 Glutamine amidotransferase class-I JRI60_43095 PF00849 RNA pseudouridylate synthase JRI60_43105 PF02350 UDP-N-acetylglucosamine 2-epimerase JRI60_43110 PF02348 Cytidylyltransferase JRI60_43115 PF00664 ABC transporter transmembrane region JRI60_43115 PF00005 ABC transporter JRI60_43125 PF06418 CTP synthase N-terminus JRI60_43125 PF00117 Glutamine amidotransferase class-I JRI60_43130 PF00793 DAHP synthetase I family JRI60_43140 PF00486 Transcriptional regulatory protein, C terminal JRI60_43140 PF00072 Response regulator receiver domain JRI60_43145 PF00011 Hsp20/alpha crystallin family JRI60_43170 PF03793 PASTA domain JRI60_43170 PF00069 Protein kinase domain JRI60_43175 PF00072 Response regulator receiver domain JRI60_43185 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JRI60_43185 PF10531 SLBB domain JRI60_43185 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JRI60_43190 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JRI60_43195 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JRI60_43200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JRI60_43200 PF00361 Proton-conducting membrane transporter JRI60_43205 PF00361 Proton-conducting membrane transporter JRI60_43210 PF00361 Proton-conducting membrane transporter JRI60_43215 PF00072 Response regulator receiver domain JRI60_43215 PF00158 Sigma-54 interaction domain JRI60_43215 PF02954 Bacterial regulatory protein, Fis family JRI60_43220 PF00512 His Kinase A (phospho-acceptor) domain JRI60_43220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_43225 PF09106 Elongation factor SelB, winged helix JRI60_43225 PF09107 Elongation factor SelB, winged helix JRI60_43225 PF03144 Elongation factor Tu domain 2 JRI60_43225 PF00009 Elongation factor Tu GTP binding domain JRI60_43230 PF00156 Phosphoribosyl transferase domain JRI60_43235 PF01430 Hsp33 protein JRI60_43245 PF00436 Single-strand binding protein family JRI60_43250 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JRI60_43260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JRI60_43265 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_43270 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_43270 PF12911 N-terminal TM domain of oligopeptide transport permease C JRI60_43275 PF13673 Acetyltransferase (GNAT) domain JRI60_43325 PF00440 Bacterial regulatory proteins, tetR family JRI60_43325 PF17932 Tetracyclin repressor-like, C-terminal domain JRI60_43345 PF07238 PilZ domain JRI60_43345 PF00069 Protein kinase domain JRI60_43355 PF02580 D-Tyr-tRNA(Tyr) deacylase JRI60_43365 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JRI60_43370 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_43370 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_43375 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JRI60_43375 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JRI60_43380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_43380 PF00512 His Kinase A (phospho-acceptor) domain JRI60_43380 PF00672 HAMP domain JRI60_43390 PF12833 Helix-turn-helix domain JRI60_43405 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JRI60_43410 PF00923 Transaldolase/Fructose-6-phosphate aldolase JRI60_43435 PF00561 alpha/beta hydrolase fold JRI60_43440 PF03466 LysR substrate binding domain JRI60_43440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_43465 PF18158 Adaptive response protein AidB N-terminal domain JRI60_43465 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_43465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_43480 PF00501 AMP-binding enzyme JRI60_43480 PF13193 AMP-binding enzyme C-terminal domain JRI60_43480 PF00668 Condensation domain JRI60_43480 PF00550 Phosphopantetheine attachment site JRI60_43520 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_43520 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_43540 PF00069 Protein kinase domain JRI60_43540 PF03793 PASTA domain JRI60_43560 PF00072 Response regulator receiver domain JRI60_43560 PF00486 Transcriptional regulatory protein, C terminal JRI60_43575 PF01638 HxlR-like helix-turn-helix JRI60_43590 PF00106 short chain dehydrogenase JRI60_43620 PF17137 Domain of unknown function (DUF5110) JRI60_43620 PF01055 Glycosyl hydrolases family 31 JRI60_43620 PF13802 Galactose mutarotase-like JRI60_43620 PF16338 Domain of unknown function (DUF4968) JRI60_43650 PF13408 Recombinase zinc beta ribbon domain JRI60_43650 PF00239 Resolvase, N terminal domain JRI60_43650 PF07508 Recombinase JRI60_43655 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JRI60_43655 PF00391 PEP-utilising enzyme, mobile domain JRI60_43685 PF07995 Glucose / Sorbosone dehydrogenase JRI60_43730 PF07681 DoxX JRI60_43735 PF03466 LysR substrate binding domain JRI60_43735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_43790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_43790 PF00072 Response regulator receiver domain JRI60_43790 PF00512 His Kinase A (phospho-acceptor) domain JRI60_43790 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_43835 PF00067 Cytochrome P450 JRI60_43840 PF00440 Bacterial regulatory proteins, tetR family JRI60_43850 PF00149 Calcineurin-like phosphoesterase JRI60_43855 PF08361 MAATS-type transcriptional repressor, C-terminal region JRI60_43855 PF00440 Bacterial regulatory proteins, tetR family JRI60_43885 PF07859 alpha/beta hydrolase fold JRI60_43895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_43895 PF03466 LysR substrate binding domain JRI60_43940 PF01638 HxlR-like helix-turn-helix JRI60_43955 PF13188 PAS domain JRI60_43955 PF08448 PAS fold JRI60_43955 PF00512 His Kinase A (phospho-acceptor) domain JRI60_43955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_43955 PF00072 Response regulator receiver domain JRI60_43980 PF13439 Glycosyltransferase Family 4 JRI60_43990 PF00309 Sigma-54 factor, Activator interacting domain (AID) JRI60_43990 PF04552 Sigma-54, DNA binding domain JRI60_43990 PF04963 Sigma-54 factor, core binding domain JRI60_43995 PF00005 ABC transporter JRI60_43995 PF12399 Branched-chain amino acid ATP-binding cassette transporter JRI60_44010 PF03279 Bacterial lipid A biosynthesis acyltransferase JRI60_44015 PF04996 Succinylarginine dihydrolase JRI60_44050 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JRI60_44050 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JRI60_44050 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JRI60_44075 PF00953 Glycosyl transferase family 4 JRI60_44085 PF00483 Nucleotidyl transferase JRI60_44090 PF16363 GDP-mannose 4,6 dehydratase JRI60_44095 PF00082 Subtilase family JRI60_44095 PF05922 Peptidase inhibitor I9 JRI60_44110 PF00128 Alpha amylase, catalytic domain JRI60_44110 PF01373 Glycosyl hydrolase family 14 JRI60_44110 PF03423 Carbohydrate binding domain (family 25) JRI60_44120 PF00067 Cytochrome P450 JRI60_44155 PF13439 Glycosyltransferase Family 4 JRI60_44165 PF00534 Glycosyl transferases group 1 JRI60_44165 PF13439 Glycosyltransferase Family 4 JRI60_44180 PF13614 AAA domain JRI60_44185 PF00398 Ribosomal RNA adenine dimethylase JRI60_44190 PF00543 Nitrogen regulatory protein P-II JRI60_44205 PF01757 Acyltransferase family JRI60_44210 PF03062 MBOAT, membrane-bound O-acyltransferase family JRI60_44225 PF03461 TRCF domain JRI60_44225 PF17757 UvrB interaction domain JRI60_44225 PF00270 DEAD/DEAH box helicase JRI60_44225 PF02559 CarD-like/TRCF domain JRI60_44225 PF00271 Helicase conserved C-terminal domain JRI60_44240 PF00691 OmpA family JRI60_44240 PF13677 Membrane MotB of proton-channel complex MotA/MotB JRI60_44245 PF00072 Response regulator receiver domain JRI60_44245 PF00990 Diguanylate cyclase, GGDEF domain JRI60_44255 PF01546 Peptidase family M20/M25/M40 JRI60_44255 PF07687 Peptidase dimerisation domain JRI60_44260 PF02630 SCO1/SenC JRI60_44300 PF00571 CBS domain JRI60_44310 PF02015 Glycosyl hydrolase family 45 JRI60_44310 PF00553 Cellulose binding domain JRI60_44310 PF02013 Cellulose or protein binding domain JRI60_44360 PF04238 Protein of unknown function (DUF420) JRI60_44365 PF08448 PAS fold JRI60_44365 PF00512 His Kinase A (phospho-acceptor) domain JRI60_44365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_44365 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_44365 PF00672 HAMP domain JRI60_44370 PF00072 Response regulator receiver domain JRI60_44375 PF01590 GAF domain JRI60_44375 PF00512 His Kinase A (phospho-acceptor) domain JRI60_44375 PF08446 PAS fold JRI60_44375 PF00360 Phytochrome region JRI60_44375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_44385 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_44385 PF00082 Subtilase family JRI60_44390 PF17912 MalK OB fold domain JRI60_44390 PF00005 ABC transporter JRI60_44395 PF17912 MalK OB fold domain JRI60_44395 PF00005 ABC transporter JRI60_44400 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_44405 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_44450 PF08494 DEAD/H associated JRI60_44450 PF00271 Helicase conserved C-terminal domain JRI60_44450 PF00270 DEAD/DEAH box helicase JRI60_44465 PF00107 Zinc-binding dehydrogenase JRI60_44465 PF13823 Alcohol dehydrogenase GroES-associated JRI60_44465 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_44475 PF00355 Rieske [2Fe-2S] domain JRI60_44480 PF03055 Retinal pigment epithelial membrane protein JRI60_44490 PF04945 YHS domain JRI60_44500 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JRI60_44500 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_44505 PF12706 Beta-lactamase superfamily domain JRI60_44525 PF00106 short chain dehydrogenase JRI60_44530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_44530 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JRI60_44530 PF00034 Cytochrome c JRI60_44560 PF12320 Type 5 capsule protein repressor C-terminal domain JRI60_44560 PF00149 Calcineurin-like phosphoesterase JRI60_44565 PF02567 Phenazine biosynthesis-like protein JRI60_44585 PF00149 Calcineurin-like phosphoesterase JRI60_44595 PF00144 Beta-lactamase JRI60_44610 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal JRI60_44610 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal JRI60_44615 PF00135 Carboxylesterase family JRI60_44630 PF00005 ABC transporter JRI60_44635 PF12679 ABC-2 family transporter protein JRI60_44645 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JRI60_44645 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JRI60_44650 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JRI60_44655 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JRI60_44655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JRI60_44665 PF01799 [2Fe-2S] binding domain JRI60_44665 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_44670 PF00034 Cytochrome c JRI60_44670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JRI60_44670 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_44675 PF03641 Possible lysine decarboxylase JRI60_44680 PF00860 Permease family JRI60_44685 PF00723 Glycosyl hydrolases family 15 JRI60_44685 PF09137 Glucodextranase, domain N JRI60_44695 PF13193 AMP-binding enzyme C-terminal domain JRI60_44695 PF00501 AMP-binding enzyme JRI60_44715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_44715 PF00512 His Kinase A (phospho-acceptor) domain JRI60_44720 PF00989 PAS fold JRI60_44720 PF00512 His Kinase A (phospho-acceptor) domain JRI60_44720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_44725 PF01709 Transcriptional regulator JRI60_44730 PF02335 Cytochrome c552 JRI60_44735 PF03264 NapC/NirT cytochrome c family, N-terminal region JRI60_44745 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_44745 PF00107 Zinc-binding dehydrogenase JRI60_44750 PF00756 Putative esterase JRI60_44775 PF02557 D-alanyl-D-alanine carboxypeptidase JRI60_44780 PF00722 Glycosyl hydrolases family 16 JRI60_44795 PF07238 PilZ domain JRI60_44795 PF00069 Protein kinase domain JRI60_44805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_44805 PF08448 PAS fold JRI60_44805 PF08447 PAS fold JRI60_44810 PF00069 Protein kinase domain JRI60_44810 PF03793 PASTA domain JRI60_44825 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal JRI60_44825 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal JRI60_44860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JRI60_44860 PF00205 Thiamine pyrophosphate enzyme, central domain JRI60_44860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JRI60_44865 PF00854 POT family JRI60_44870 PF13411 MerR HTH family regulatory protein JRI60_44870 PF02607 B12 binding domain JRI60_44870 PF02310 B12 binding domain JRI60_44875 PF13411 MerR HTH family regulatory protein JRI60_44875 PF02310 B12 binding domain JRI60_44905 PF01593 Flavin containing amine oxidoreductase JRI60_44910 PF00368 Hydroxymethylglutaryl-coenzyme A reductase JRI60_44920 PF01593 Flavin containing amine oxidoreductase JRI60_44925 PF00348 Polyprenyl synthetase JRI60_44935 PF08338 Domain of unknown function (DUF1731) JRI60_44935 PF01370 NAD dependent epimerase/dehydratase family JRI60_44940 PF00149 Calcineurin-like phosphoesterase JRI60_44945 PF17932 Tetracyclin repressor-like, C-terminal domain JRI60_44945 PF00440 Bacterial regulatory proteins, tetR family JRI60_44950 PF01979 Amidohydrolase family JRI60_44965 PF03793 PASTA domain JRI60_44965 PF00069 Protein kinase domain JRI60_44990 PF02743 Cache domain JRI60_44990 PF00672 HAMP domain JRI60_44990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_45005 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_45020 PF10459 Peptidase S46 JRI60_45045 PF00210 Ferritin-like domain JRI60_45050 PF00106 short chain dehydrogenase JRI60_45055 PF02798 Glutathione S-transferase, N-terminal domain JRI60_45055 PF00043 Glutathione S-transferase, C-terminal domain JRI60_45060 PF02547 Queuosine biosynthesis protein JRI60_45065 PF00719 Inorganic pyrophosphatase JRI60_45080 PF00012 Hsp70 protein JRI60_45095 PF01327 Polypeptide deformylase JRI60_45110 PF13302 Acetyltransferase (GNAT) domain JRI60_45110 PF00027 Cyclic nucleotide-binding domain JRI60_45120 PF05139 Erythromycin esterase JRI60_45120 PF00156 Phosphoribosyl transferase domain JRI60_45125 PF00561 alpha/beta hydrolase fold JRI60_45150 PF17284 Spermidine synthase tetramerisation domain JRI60_45170 PF00034 Cytochrome c JRI60_45170 PF03150 Di-haem cytochrome c peroxidase JRI60_45190 PF01037 Lrp/AsnC ligand binding domain JRI60_45195 PF00155 Aminotransferase class I and II JRI60_45230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_45230 PF03466 LysR substrate binding domain JRI60_45245 PF00067 Cytochrome P450 JRI60_45255 PF02557 D-alanyl-D-alanine carboxypeptidase JRI60_45265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_45270 PF00873 AcrB/AcrD/AcrF family JRI60_45280 PF00155 Aminotransferase class I and II JRI60_45300 PF01136 Peptidase family U32 JRI60_45300 PF16325 Peptidase family U32 C-terminal domain JRI60_45310 PF01817 Chorismate mutase type II JRI60_45310 PF02153 Prephenate dehydrogenase JRI60_45320 PF00144 Beta-lactamase JRI60_45325 PF02733 Dak1 domain JRI60_45325 PF02734 DAK2 domain JRI60_45330 PF00672 HAMP domain JRI60_45330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_45330 PF00512 His Kinase A (phospho-acceptor) domain JRI60_45335 PF02163 Peptidase family M50 JRI60_45390 PF02585 GlcNAc-PI de-N-acetylase JRI60_45420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_45420 PF00672 HAMP domain JRI60_45420 PF00512 His Kinase A (phospho-acceptor) domain JRI60_45425 PF00072 Response regulator receiver domain JRI60_45430 PF08446 PAS fold JRI60_45430 PF00512 His Kinase A (phospho-acceptor) domain JRI60_45430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_45430 PF01590 GAF domain JRI60_45430 PF00360 Phytochrome region JRI60_45440 PF00593 TonB dependent receptor JRI60_45440 PF07715 TonB-dependent Receptor Plug Domain JRI60_45450 PF02463 RecF/RecN/SMC N terminal domain JRI60_45455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_45455 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_45455 PF12806 Acetyl-CoA dehydrogenase C-terminal like JRI60_45455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_45465 PF07720 Tetratricopeptide repeat JRI60_45465 PF01435 Peptidase family M48 JRI60_45475 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_45475 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_45475 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_45475 PF03413 Peptidase propeptide and YPEB domain JRI60_45480 PF07759 Protein of unknown function (DUF1615) JRI60_45495 PF05193 Peptidase M16 inactive domain JRI60_45495 PF00675 Insulinase (Peptidase family M16) JRI60_45500 PF01494 FAD binding domain JRI60_45540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_45540 PF03466 LysR substrate binding domain JRI60_45545 PF07969 Amidohydrolase family JRI60_45555 PF00534 Glycosyl transferases group 1 JRI60_45565 PF01145 SPFH domain / Band 7 family JRI60_45565 PF16200 C-terminal region of band_7 JRI60_45575 PF13411 MerR HTH family regulatory protein JRI60_45605 PF12833 Helix-turn-helix domain JRI60_45605 PF02311 AraC-like ligand binding domain JRI60_45620 PF00521 DNA gyrase/topoisomerase IV, subunit A JRI60_45620 PF03989 DNA gyrase C-terminal domain, beta-propeller JRI60_45640 PF03167 Uracil DNA glycosylase superfamily JRI60_45650 PF00437 Type II/IV secretion system protein JRI60_45675 PF07238 PilZ domain JRI60_45675 PF00069 Protein kinase domain JRI60_45695 PF04348 LppC putative lipoprotein JRI60_45710 PF00891 O-methyltransferase domain JRI60_45710 PF16864 Dimerisation domain JRI60_45715 PF00266 Aminotransferase class-V JRI60_45725 PF00069 Protein kinase domain JRI60_45730 PF00158 Sigma-54 interaction domain JRI60_45730 PF00072 Response regulator receiver domain JRI60_45730 PF02954 Bacterial regulatory protein, Fis family JRI60_45740 PF03413 Peptidase propeptide and YPEB domain JRI60_45740 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_45740 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_45740 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_45745 PF00704 Glycosyl hydrolases family 18 JRI60_45745 PF00041 Fibronectin type III domain JRI60_45750 PF02558 Ketopantoate reductase PanE/ApbA JRI60_45750 PF08546 Ketopantoate reductase PanE/ApbA C terminal JRI60_45755 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_45755 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_45765 PF00437 Type II/IV secretion system protein JRI60_45770 PF00226 DnaJ domain JRI60_45770 PF01556 DnaJ C terminal domain JRI60_45770 PF00684 DnaJ central domain JRI60_45780 PF00664 ABC transporter transmembrane region JRI60_45780 PF00005 ABC transporter JRI60_45810 PF01494 FAD binding domain JRI60_45815 PF12137 RNA polymerase recycling family C-terminal JRI60_45815 PF18337 RapA N-terminal Tudor like domain JRI60_45815 PF00176 SNF2 family N-terminal domain JRI60_45815 PF00271 Helicase conserved C-terminal domain JRI60_45815 PF18339 RapA N-terminal Tudor like domain 1 JRI60_45820 PF00672 HAMP domain JRI60_45820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_45820 PF00512 His Kinase A (phospho-acceptor) domain JRI60_45820 PF18698 Histidine kinase sensor domain JRI60_45835 PF01627 Hpt domain JRI60_45835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_45835 PF00072 Response regulator receiver domain JRI60_45835 PF00512 His Kinase A (phospho-acceptor) domain JRI60_45835 PF00672 HAMP domain JRI60_45835 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_45840 PF00072 Response regulator receiver domain JRI60_45845 PF00072 Response regulator receiver domain JRI60_45845 PF00196 Bacterial regulatory proteins, luxR family JRI60_45865 PF00069 Protein kinase domain JRI60_45900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_45900 PF00512 His Kinase A (phospho-acceptor) domain JRI60_45905 PF00486 Transcriptional regulatory protein, C terminal JRI60_45905 PF00072 Response regulator receiver domain JRI60_45910 PF03109 ABC1 family JRI60_45915 PF00069 Protein kinase domain JRI60_45915 PF07238 PilZ domain JRI60_45925 PF02667 Short chain fatty acid transporter JRI60_45935 PF03030 Inorganic H+ pyrophosphatase JRI60_45950 PF00313 'Cold-shock' DNA-binding domain JRI60_45970 PF00873 AcrB/AcrD/AcrF family JRI60_45980 PF00440 Bacterial regulatory proteins, tetR family JRI60_45990 PF12706 Beta-lactamase superfamily domain JRI60_45990 PF00753 Metallo-beta-lactamase superfamily JRI60_46015 PF00561 alpha/beta hydrolase fold JRI60_46050 PF07969 Amidohydrolase family JRI60_46125 PF02566 OsmC-like protein JRI60_46135 PF01434 Peptidase family M41 JRI60_46135 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_46135 PF06480 FtsH Extracellular JRI60_46135 PF17862 AAA+ lid domain JRI60_46150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_46150 PF00512 His Kinase A (phospho-acceptor) domain JRI60_46150 PF00989 PAS fold JRI60_46150 PF00672 HAMP domain JRI60_46160 PF13505 Outer membrane protein beta-barrel domain JRI60_46160 PF00691 OmpA family JRI60_46165 PF00512 His Kinase A (phospho-acceptor) domain JRI60_46165 PF00672 HAMP domain JRI60_46165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_46185 PF00107 Zinc-binding dehydrogenase JRI60_46185 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_46190 PF03466 LysR substrate binding domain JRI60_46190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_46210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_46210 PF00512 His Kinase A (phospho-acceptor) domain JRI60_46215 PF00248 Aldo/keto reductase family JRI60_46220 PF05225 helix-turn-helix, Psq domain JRI60_46220 PF02810 SEC-C motif JRI60_46245 PF00005 ABC transporter JRI60_46250 PF03073 TspO/MBR family JRI60_46270 PF13614 AAA domain JRI60_46280 PF01381 Helix-turn-helix JRI60_46290 PF08448 PAS fold JRI60_46290 PF08447 PAS fold JRI60_46290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_46300 PF17925 Tetracyclin repressor-like, C-terminal domain JRI60_46300 PF00440 Bacterial regulatory proteins, tetR family JRI60_46305 PF00171 Aldehyde dehydrogenase family JRI60_46325 PF00069 Protein kinase domain JRI60_46325 PF07238 PilZ domain JRI60_46335 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal JRI60_46335 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal JRI60_46345 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_46365 PF01569 PAP2 superfamily JRI60_46385 PF00171 Aldehyde dehydrogenase family JRI60_46395 PF00158 Sigma-54 interaction domain JRI60_46395 PF00072 Response regulator receiver domain JRI60_46395 PF02954 Bacterial regulatory protein, Fis family JRI60_46405 PF01040 UbiA prenyltransferase family JRI60_46405 PF02628 Cytochrome oxidase assembly protein JRI60_46415 PF13191 AAA ATPase domain JRI60_46415 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_46445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_46450 PF02896 PEP-utilising enzyme, TIM barrel domain JRI60_46450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JRI60_46450 PF00391 PEP-utilising enzyme, mobile domain JRI60_46470 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_46475 PF00571 CBS domain JRI60_46475 PF00005 ABC transporter JRI60_46490 PF00565 Staphylococcal nuclease homologue JRI60_46505 PF00756 Putative esterase JRI60_46515 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JRI60_46515 PF02142 MGS-like domain JRI60_46515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_46525 PF13439 Glycosyltransferase Family 4 JRI60_46525 PF00534 Glycosyl transferases group 1 JRI60_46530 PF00005 ABC transporter JRI60_46530 PF12848 ABC transporter JRI60_46540 PF00005 ABC transporter JRI60_46545 PF01061 ABC-2 type transporter JRI60_46550 PF00069 Protein kinase domain JRI60_46555 PF11954 Domain of unknown function (DUF3471) JRI60_46555 PF00144 Beta-lactamase JRI60_46565 PF00860 Permease family JRI60_46570 PF13426 PAS domain JRI60_46570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_46570 PF00072 Response regulator receiver domain JRI60_46585 PF11941 Domain of unknown function (DUF3459) JRI60_46585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_46585 PF00128 Alpha amylase, catalytic domain JRI60_46590 PF06689 ClpX C4-type zinc finger JRI60_46590 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_46590 PF07724 AAA domain (Cdc48 subfamily) JRI60_46640 PF13091 PLD-like domain JRI60_46640 PF13396 Phospholipase_D-nuclease N-terminal JRI60_46650 PF01131 DNA topoisomerase JRI60_46650 PF01751 Toprim domain JRI60_46660 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JRI60_46670 PF00155 Aminotransferase class I and II JRI60_46695 PF00512 His Kinase A (phospho-acceptor) domain JRI60_46695 PF00360 Phytochrome region JRI60_46695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_46695 PF08446 PAS fold JRI60_46695 PF01590 GAF domain JRI60_46715 PF07715 TonB-dependent Receptor Plug Domain JRI60_46715 PF00593 TonB dependent receptor JRI60_46720 PF18331 PKHD-type hydroxylase C-terminal domain JRI60_46720 PF13640 2OG-Fe(II) oxygenase superfamily JRI60_46730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_46730 PF00989 PAS fold JRI60_46730 PF00512 His Kinase A (phospho-acceptor) domain JRI60_46730 PF00672 HAMP domain JRI60_46730 PF18698 Histidine kinase sensor domain JRI60_46735 PF00873 AcrB/AcrD/AcrF family JRI60_46740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_46745 PF00486 Transcriptional regulatory protein, C terminal JRI60_46745 PF00072 Response regulator receiver domain JRI60_46750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_46750 PF00512 His Kinase A (phospho-acceptor) domain JRI60_46750 PF00989 PAS fold JRI60_46750 PF11808 Phosphate regulon sensor protein PhoR JRI60_46770 PF13416 Bacterial extracellular solute-binding protein JRI60_46775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_46775 PF00512 His Kinase A (phospho-acceptor) domain JRI60_46775 PF00989 PAS fold JRI60_46780 PF08546 Ketopantoate reductase PanE/ApbA C terminal JRI60_46780 PF02558 Ketopantoate reductase PanE/ApbA JRI60_46785 PF13193 AMP-binding enzyme C-terminal domain JRI60_46785 PF00501 AMP-binding enzyme JRI60_46800 PF00069 Protein kinase domain JRI60_46805 PF00486 Transcriptional regulatory protein, C terminal JRI60_46805 PF00072 Response regulator receiver domain JRI60_46820 PF07715 TonB-dependent Receptor Plug Domain JRI60_46820 PF00593 TonB dependent receptor JRI60_46825 PF00069 Protein kinase domain JRI60_46830 PF00664 ABC transporter transmembrane region JRI60_46830 PF00005 ABC transporter JRI60_46835 PF00664 ABC transporter transmembrane region JRI60_46835 PF00005 ABC transporter JRI60_46850 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain JRI60_46850 PF09297 NADH pyrophosphatase zinc ribbon domain JRI60_46850 PF00293 NUDIX domain JRI60_46855 PF04055 Radical SAM superfamily JRI60_46875 PF00005 ABC transporter JRI60_46880 PF08447 PAS fold JRI60_46880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_46880 PF08448 PAS fold JRI60_46885 PF01541 GIY-YIG catalytic domain JRI60_46905 PF05698 Bacterial trigger factor protein (TF) C-terminus JRI60_46910 PF09312 SurA N-terminal domain JRI60_46910 PF00639 PPIC-type PPIASE domain JRI60_46915 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JRI60_46930 PF06745 KaiC JRI60_46935 PF00072 Response regulator receiver domain JRI60_46935 PF00486 Transcriptional regulatory protein, C terminal JRI60_46940 PF01739 CheR methyltransferase, SAM binding domain JRI60_46940 PF03705 CheR methyltransferase, all-alpha domain JRI60_46940 PF01339 CheB methylesterase JRI60_46940 PF08448 PAS fold JRI60_46945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_46945 PF08448 PAS fold JRI60_46945 PF00512 His Kinase A (phospho-acceptor) domain JRI60_46945 PF00072 Response regulator receiver domain JRI60_46945 PF13188 PAS domain JRI60_46970 PF01674 Lipase (class 2) JRI60_46980 PF01494 FAD binding domain JRI60_46985 PF08361 MAATS-type transcriptional repressor, C-terminal region JRI60_46985 PF00440 Bacterial regulatory proteins, tetR family JRI60_46995 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_47025 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_47030 PF00005 ABC transporter JRI60_47035 PF00723 Glycosyl hydrolases family 15 JRI60_47050 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_47050 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_47050 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_47050 PF00698 Acyl transferase domain JRI60_47050 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_47050 PF08659 KR domain JRI60_47050 PF00550 Phosphopantetheine attachment site JRI60_47050 PF14765 Polyketide synthase dehydratase JRI60_47055 PF00266 Aminotransferase class-V JRI60_47090 PF09587 Bacterial capsule synthesis protein PGA_cap JRI60_47100 PF00255 Glutathione peroxidase JRI60_47115 PF13977 BetI-type transcriptional repressor, C-terminal JRI60_47115 PF00440 Bacterial regulatory proteins, tetR family JRI60_47130 PF01425 Amidase JRI60_47145 PF03793 PASTA domain JRI60_47145 PF00069 Protein kinase domain JRI60_47160 PF02798 Glutathione S-transferase, N-terminal domain JRI60_47160 PF00043 Glutathione S-transferase, C-terminal domain JRI60_47165 PF00535 Glycosyl transferase family 2 JRI60_47170 PF00989 PAS fold JRI60_47170 PF00512 His Kinase A (phospho-acceptor) domain JRI60_47170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_47170 PF00672 HAMP domain JRI60_47180 PF18029 Glyoxalase-like domain JRI60_47180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_47205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_47220 PF00561 alpha/beta hydrolase fold JRI60_47220 PF08386 TAP-like protein JRI60_47235 PF00069 Protein kinase domain JRI60_47240 PF00158 Sigma-54 interaction domain JRI60_47240 PF02954 Bacterial regulatory protein, Fis family JRI60_47240 PF00072 Response regulator receiver domain JRI60_47245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_47245 PF00512 His Kinase A (phospho-acceptor) domain JRI60_47245 PF00672 HAMP domain JRI60_47245 PF00989 PAS fold JRI60_47270 PF00069 Protein kinase domain JRI60_47270 PF03793 PASTA domain JRI60_47275 PF00072 Response regulator receiver domain JRI60_47280 PF00072 Response regulator receiver domain JRI60_47280 PF00486 Transcriptional regulatory protein, C terminal JRI60_47285 PF00342 Phosphoglucose isomerase JRI60_47295 PF00067 Cytochrome P450 JRI60_47305 PF01593 Flavin containing amine oxidoreductase JRI60_47315 PF00069 Protein kinase domain JRI60_47325 PF01494 FAD binding domain JRI60_47330 PF00266 Aminotransferase class-V JRI60_47340 PF06052 3-hydroxyanthranilic acid dioxygenase JRI60_47345 PF01042 Endoribonuclease L-PSP JRI60_47350 PF00171 Aldehyde dehydrogenase family JRI60_47365 PF00672 HAMP domain JRI60_47365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_47365 PF17200 Single Cache domain 2 JRI60_47385 PF01557 Fumarylacetoacetate (FAA) hydrolase family JRI60_47415 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_47415 PF01627 Hpt domain JRI60_47415 PF00072 Response regulator receiver domain JRI60_47415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_47415 PF00672 HAMP domain JRI60_47415 PF00512 His Kinase A (phospho-acceptor) domain JRI60_47420 PF00512 His Kinase A (phospho-acceptor) domain JRI60_47420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_47420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_47420 PF00672 HAMP domain JRI60_47420 PF01627 Hpt domain JRI60_47420 PF00072 Response regulator receiver domain JRI60_47460 PF00082 Subtilase family JRI60_47475 PF00067 Cytochrome P450 JRI60_47500 PF01409 tRNA synthetases class II core domain (F) JRI60_47500 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JRI60_47545 PF00171 Aldehyde dehydrogenase family JRI60_47565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_47565 PF00512 His Kinase A (phospho-acceptor) domain JRI60_47565 PF09308 LuxQ, periplasmic JRI60_47565 PF00072 Response regulator receiver domain JRI60_47570 PF00069 Protein kinase domain JRI60_47570 PF03793 PASTA domain JRI60_47600 PF00149 Calcineurin-like phosphoesterase JRI60_47615 PF00355 Rieske [2Fe-2S] domain JRI60_47630 PF13847 Methyltransferase domain JRI60_47635 PF00285 Citrate synthase, C-terminal domain JRI60_47650 PF09559 Cas6 Crispr JRI60_47665 PF03787 RAMP superfamily JRI60_47695 PF00069 Protein kinase domain JRI60_47695 PF07238 PilZ domain JRI60_47705 PF00069 Protein kinase domain JRI60_47705 PF03793 PASTA domain JRI60_47715 PF01926 50S ribosome-binding GTPase JRI60_47715 PF06071 Protein of unknown function (DUF933) JRI60_47720 PF00430 ATP synthase B/B' CF(0) JRI60_47725 PF00137 ATP synthase subunit C JRI60_47730 PF00119 ATP synthase A chain JRI60_47755 PF01161 Phosphatidylethanolamine-binding protein JRI60_47760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_47760 PF00989 PAS fold JRI60_47760 PF00512 His Kinase A (phospho-acceptor) domain JRI60_47790 PF04542 Sigma-70 region 2 JRI60_47790 PF04545 Sigma-70, region 4 JRI60_47805 PF00067 Cytochrome P450 JRI60_47810 PF00005 ABC transporter JRI60_47815 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_47835 PF00067 Cytochrome P450 JRI60_47870 PF04072 Leucine carboxyl methyltransferase JRI60_47875 PF07470 Glycosyl Hydrolase Family 88 JRI60_47890 PF00672 HAMP domain JRI60_47890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_47890 PF00512 His Kinase A (phospho-acceptor) domain JRI60_47895 PF00486 Transcriptional regulatory protein, C terminal JRI60_47895 PF00072 Response regulator receiver domain JRI60_47895 PF01627 Hpt domain JRI60_47905 PF00144 Beta-lactamase JRI60_47910 PF00891 O-methyltransferase domain JRI60_47930 PF01022 Bacterial regulatory protein, arsR family JRI60_47935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JRI60_47945 PF16360 GTP-binding GTPase Middle Region JRI60_47945 PF01926 50S ribosome-binding GTPase JRI60_47945 PF13167 GTP-binding GTPase N-terminal JRI60_47975 PF00305 Lipoxygenase JRI60_48060 PF00672 HAMP domain JRI60_48060 PF00512 His Kinase A (phospho-acceptor) domain JRI60_48060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_48105 PF01965 DJ-1/PfpI family JRI60_48115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_48115 PF03466 LysR substrate binding domain JRI60_48140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_48140 PF03466 LysR substrate binding domain JRI60_48155 PF00069 Protein kinase domain JRI60_48155 PF13462 Thioredoxin JRI60_48165 PF07238 PilZ domain JRI60_48165 PF00069 Protein kinase domain JRI60_48185 PF00072 Response regulator receiver domain JRI60_48185 PF00158 Sigma-54 interaction domain JRI60_48190 PF12146 Serine aminopeptidase, S33 JRI60_48195 PF04493 Endonuclease V JRI60_48205 PF00069 Protein kinase domain JRI60_48220 PF00384 Molybdopterin oxidoreductase JRI60_48220 PF01568 Molydopterin dinucleotide binding domain JRI60_48225 PF07690 Major Facilitator Superfamily JRI60_48235 PF03577 Peptidase family C69 JRI60_48240 PF00533 BRCA1 C Terminus (BRCT) domain JRI60_48240 PF12826 Helix-hairpin-helix motif JRI60_48240 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JRI60_48240 PF01653 NAD-dependent DNA ligase adenylation domain JRI60_48240 PF03120 NAD-dependent DNA ligase OB-fold domain JRI60_48255 PF05683 Fumarase C-terminus JRI60_48255 PF05681 Fumarate hydratase (Fumerase) JRI60_48265 PF00072 Response regulator receiver domain JRI60_48265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_48265 PF00512 His Kinase A (phospho-acceptor) domain JRI60_48265 PF09308 LuxQ, periplasmic JRI60_48270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_48270 PF00512 His Kinase A (phospho-acceptor) domain JRI60_48280 PF13581 Histidine kinase-like ATPase domain JRI60_48285 PF01740 STAS domain JRI60_48290 PF08678 Rsbr N terminal JRI60_48290 PF01740 STAS domain JRI60_48295 PF00069 Protein kinase domain JRI60_48300 PF00202 Aminotransferase class-III JRI60_48355 PF01790 Prolipoprotein diacylglyceryl transferase JRI60_48360 PF01252 Signal peptidase (SPase) II JRI60_48365 PF01252 Signal peptidase (SPase) II JRI60_48385 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_48385 PF06827 Zinc finger found in FPG and IleRS JRI60_48385 PF08264 Anticodon-binding domain of tRNA JRI60_48420 PF00158 Sigma-54 interaction domain JRI60_48420 PF00072 Response regulator receiver domain JRI60_48420 PF02954 Bacterial regulatory protein, Fis family JRI60_48425 PF08443 RimK-like ATP-grasp domain JRI60_48425 PF18030 RimK PreATP-grasp domain JRI60_48460 PF07676 WD40-like Beta Propeller Repeat JRI60_48480 PF00512 His Kinase A (phospho-acceptor) domain JRI60_48480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_48480 PF18698 Histidine kinase sensor domain JRI60_48480 PF00672 HAMP domain JRI60_48485 PF04070 Domain of unknown function (DUF378) JRI60_48490 PF00326 Prolyl oligopeptidase family JRI60_48490 PF07676 WD40-like Beta Propeller Repeat JRI60_48515 PF01367 5'-3' exonuclease, C-terminal SAM fold JRI60_48515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JRI60_48515 PF00476 DNA polymerase family A JRI60_48530 PF01661 Macro domain JRI60_48535 PF13302 Acetyltransferase (GNAT) domain JRI60_48540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_48540 PF00512 His Kinase A (phospho-acceptor) domain JRI60_48545 PF01204 Trehalase JRI60_48565 PF02463 RecF/RecN/SMC N terminal domain JRI60_48565 PF06470 SMC proteins Flexible Hinge Domain JRI60_48590 PF00202 Aminotransferase class-III JRI60_48600 PF13367 PrsW family intramembrane metalloprotease JRI60_48635 PF10518 TAT (twin-arginine translocation) pathway signal sequence JRI60_48635 PF00149 Calcineurin-like phosphoesterase JRI60_48650 PF04055 Radical SAM superfamily JRI60_48655 PF00072 Response regulator receiver domain JRI60_48655 PF00196 Bacterial regulatory proteins, luxR family JRI60_48660 PF13180 PDZ domain JRI60_48665 PF13180 PDZ domain JRI60_48690 PF08546 Ketopantoate reductase PanE/ApbA C terminal JRI60_48690 PF02558 Ketopantoate reductase PanE/ApbA JRI60_48700 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_48700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_48700 PF00512 His Kinase A (phospho-acceptor) domain JRI60_48705 PF00027 Cyclic nucleotide-binding domain JRI60_48705 PF13545 Crp-like helix-turn-helix domain JRI60_48720 PF00069 Protein kinase domain JRI60_48725 PF00012 Hsp70 protein JRI60_48745 PF00593 TonB dependent receptor JRI60_48770 PF04542 Sigma-70 region 2 JRI60_48770 PF08281 Sigma-70, region 4 JRI60_48775 PF00400 WD domain, G-beta repeat JRI60_48775 PF12894 Anaphase-promoting complex subunit 4 WD40 domain JRI60_48800 PF01323 DSBA-like thioredoxin domain JRI60_48815 PF00158 Sigma-54 interaction domain JRI60_48815 PF02954 Bacterial regulatory protein, Fis family JRI60_48815 PF00072 Response regulator receiver domain JRI60_48825 PF00801 PKD domain JRI60_48825 PF05547 Immune inhibitor A peptidase M6 JRI60_48840 PF03793 PASTA domain JRI60_48840 PF00069 Protein kinase domain JRI60_48850 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JRI60_48875 PF00171 Aldehyde dehydrogenase family JRI60_48890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_48915 PF00535 Glycosyl transferase family 2 JRI60_48960 PF17990 L-Lysine epsilon oxidase N-terminal JRI60_48960 PF18417 L-lysine epsilon oxidase C-terminal domain JRI60_49010 PF07237 Protein of unknown function (DUF1428) JRI60_49015 PF07690 Major Facilitator Superfamily JRI60_49035 PF00270 DEAD/DEAH box helicase JRI60_49035 PF04408 Helicase associated domain (HA2) JRI60_49035 PF00271 Helicase conserved C-terminal domain JRI60_49035 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JRI60_49035 PF11898 Domain of unknown function (DUF3418) JRI60_49060 PF06470 SMC proteins Flexible Hinge Domain JRI60_49060 PF02463 RecF/RecN/SMC N terminal domain JRI60_49090 PF01872 RibD C-terminal domain JRI60_49115 PF07995 Glucose / Sorbosone dehydrogenase JRI60_49125 PF03466 LysR substrate binding domain JRI60_49125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_49135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_49135 PF03466 LysR substrate binding domain JRI60_49175 PF00578 AhpC/TSA family JRI60_49180 PF11412 Disulphide bond corrector protein DsbC JRI60_49180 PF02683 Cytochrome C biogenesis protein transmembrane region JRI60_49210 PF13183 4Fe-4S dicluster domain JRI60_49210 PF02754 Cysteine-rich domain JRI60_49215 PF04052 TolB amino-terminal domain JRI60_49215 PF07676 WD40-like Beta Propeller Repeat JRI60_49230 PF00672 HAMP domain JRI60_49230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_49230 PF00512 His Kinase A (phospho-acceptor) domain JRI60_49230 PF01627 Hpt domain JRI60_49230 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_49230 PF00072 Response regulator receiver domain JRI60_49235 PF01509 TruB family pseudouridylate synthase (N terminal domain) JRI60_49240 PF07714 Protein tyrosine kinase JRI60_49255 PF02472 Biopolymer transport protein ExbD/TolR JRI60_49260 PF02472 Biopolymer transport protein ExbD/TolR JRI60_49280 PF02463 RecF/RecN/SMC N terminal domain JRI60_49290 PF00149 Calcineurin-like phosphoesterase JRI60_49300 PF00069 Protein kinase domain JRI60_49305 PF01751 Toprim domain JRI60_49305 PF00204 DNA gyrase B JRI60_49305 PF00986 DNA gyrase B subunit, carboxyl terminus JRI60_49305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_49320 PF00486 Transcriptional regulatory protein, C terminal JRI60_49320 PF00072 Response regulator receiver domain JRI60_49325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_49325 PF00512 His Kinase A (phospho-acceptor) domain JRI60_49325 PF16736 Single Cache-like JRI60_49325 PF00989 PAS fold JRI60_49330 PF00072 Response regulator receiver domain JRI60_49335 PF00360 Phytochrome region JRI60_49335 PF08446 PAS fold JRI60_49335 PF00512 His Kinase A (phospho-acceptor) domain JRI60_49335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_49335 PF01590 GAF domain JRI60_49350 PF00069 Protein kinase domain JRI60_49365 PF00266 Aminotransferase class-V JRI60_49380 PF00196 Bacterial regulatory proteins, luxR family JRI60_49385 PF13649 Methyltransferase domain JRI60_49395 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JRI60_49395 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JRI60_49400 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JRI60_49400 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JRI60_49405 PF00723 Glycosyl hydrolases family 15 JRI60_49440 PF00005 ABC transporter JRI60_49445 PF02405 Permease MlaE JRI60_49490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_49490 PF03466 LysR substrate binding domain JRI60_49500 PF17862 AAA+ lid domain JRI60_49500 PF01434 Peptidase family M41 JRI60_49500 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_49515 PF02463 RecF/RecN/SMC N terminal domain JRI60_49535 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JRI60_49540 PF00743 Flavin-binding monooxygenase-like JRI60_49545 PF07859 alpha/beta hydrolase fold JRI60_49550 PF00106 short chain dehydrogenase JRI60_49585 PF00571 CBS domain JRI60_49585 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_49600 PF02798 Glutathione S-transferase, N-terminal domain JRI60_49605 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JRI60_49605 PF12833 Helix-turn-helix domain JRI60_49605 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JRI60_49605 PF02805 Metal binding domain of Ada JRI60_49610 PF00248 Aldo/keto reductase family JRI60_49630 PF01022 Bacterial regulatory protein, arsR family JRI60_49635 PF00043 Glutathione S-transferase, C-terminal domain JRI60_49635 PF02798 Glutathione S-transferase, N-terminal domain JRI60_49640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_49640 PF03466 LysR substrate binding domain JRI60_49690 PF12706 Beta-lactamase superfamily domain JRI60_49695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_49700 PF08361 MAATS-type transcriptional repressor, C-terminal region JRI60_49700 PF00440 Bacterial regulatory proteins, tetR family JRI60_49710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_49720 PF00712 DNA polymerase III beta subunit, N-terminal domain JRI60_49720 PF02768 DNA polymerase III beta subunit, C-terminal domain JRI60_49720 PF02767 DNA polymerase III beta subunit, central domain JRI60_49750 PF00512 His Kinase A (phospho-acceptor) domain JRI60_49750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_49770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_49770 PF00072 Response regulator receiver domain JRI60_49770 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_49770 PF00672 HAMP domain JRI60_49770 PF00512 His Kinase A (phospho-acceptor) domain JRI60_49770 PF01627 Hpt domain JRI60_49775 PF00989 PAS fold JRI60_49775 PF00512 His Kinase A (phospho-acceptor) domain JRI60_49775 PF00672 HAMP domain JRI60_49775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_49775 PF18698 Histidine kinase sensor domain JRI60_49780 PF13191 AAA ATPase domain JRI60_49780 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_49795 PF02983 Alpha-lytic protease prodomain JRI60_49835 PF14659 Phage integrase, N-terminal SAM-like domain JRI60_49835 PF00589 Phage integrase family JRI60_49875 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_49905 PF13007 Transposase C of IS166 homeodomain JRI60_49905 PF13005 zinc-finger binding domain of transposase IS66 JRI60_49905 PF03050 Transposase IS66 family JRI60_49905 PF13817 IS66 C-terminal element JRI60_49940 PF03466 LysR substrate binding domain JRI60_49940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_49945 PF00557 Metallopeptidase family M24 JRI60_49955 PF12833 Helix-turn-helix domain JRI60_49960 PF00106 short chain dehydrogenase JRI60_49970 PF00743 Flavin-binding monooxygenase-like JRI60_49985 PF00069 Protein kinase domain JRI60_49985 PF07238 PilZ domain JRI60_50000 PF03793 PASTA domain JRI60_50000 PF00069 Protein kinase domain JRI60_50050 PF12852 Cupin JRI60_50050 PF12833 Helix-turn-helix domain JRI60_50075 PF00067 Cytochrome P450 JRI60_50085 PF13977 BetI-type transcriptional repressor, C-terminal JRI60_50085 PF00440 Bacterial regulatory proteins, tetR family JRI60_50100 PF12146 Serine aminopeptidase, S33 JRI60_50115 PF12833 Helix-turn-helix domain JRI60_50115 PF17853 GGDEF-like domain JRI60_50130 PF00793 DAHP synthetase I family JRI60_50160 PF07859 alpha/beta hydrolase fold JRI60_50165 PF03793 PASTA domain JRI60_50165 PF00069 Protein kinase domain JRI60_50195 PF07238 PilZ domain JRI60_50195 PF00069 Protein kinase domain JRI60_50210 PF08281 Sigma-70, region 4 JRI60_50210 PF04542 Sigma-70 region 2 JRI60_50215 PF00069 Protein kinase domain JRI60_50240 PF00069 Protein kinase domain JRI60_50240 PF03793 PASTA domain JRI60_50245 PF13188 PAS domain JRI60_50245 PF08448 PAS fold JRI60_50245 PF00512 His Kinase A (phospho-acceptor) domain JRI60_50245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_50245 PF00072 Response regulator receiver domain JRI60_50255 PF00171 Aldehyde dehydrogenase family JRI60_50260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JRI60_50260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JRI60_50260 PF00205 Thiamine pyrophosphate enzyme, central domain JRI60_50265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_50265 PF03466 LysR substrate binding domain JRI60_50270 PF00196 Bacterial regulatory proteins, luxR family JRI60_50270 PF00196 Bacterial regulatory proteins, luxR family JRI60_50285 PF00067 Cytochrome P450 JRI60_50290 PF00005 ABC transporter JRI60_50295 PF01061 ABC-2 type transporter JRI60_50310 PF00069 Protein kinase domain JRI60_50315 PF08000 Bacterial PH domain JRI60_50330 PF00144 Beta-lactamase JRI60_50335 PF00196 Bacterial regulatory proteins, luxR family JRI60_50335 PF00072 Response regulator receiver domain JRI60_50340 PF00072 Response regulator receiver domain JRI60_50340 PF00196 Bacterial regulatory proteins, luxR family JRI60_50345 PF00512 His Kinase A (phospho-acceptor) domain JRI60_50345 PF13426 PAS domain JRI60_50345 PF00072 Response regulator receiver domain JRI60_50345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_50345 PF08448 PAS fold JRI60_50350 PF00561 alpha/beta hydrolase fold JRI60_50355 PF12146 Serine aminopeptidase, S33 JRI60_50385 PF18417 L-lysine epsilon oxidase C-terminal domain JRI60_50385 PF17990 L-Lysine epsilon oxidase N-terminal JRI60_50390 PF01494 FAD binding domain JRI60_50405 PF00501 AMP-binding enzyme JRI60_50405 PF13193 AMP-binding enzyme C-terminal domain JRI60_50420 PF00550 Phosphopantetheine attachment site JRI60_50420 PF14765 Polyketide synthase dehydratase JRI60_50420 PF08659 KR domain JRI60_50420 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_50420 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_50420 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_50420 PF08990 Erythronolide synthase docking JRI60_50420 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_50420 PF00698 Acyl transferase domain JRI60_50430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_50430 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_50430 PF12806 Acetyl-CoA dehydrogenase C-terminal like JRI60_50430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_50460 PF00842 Alanine racemase, C-terminal domain JRI60_50460 PF01168 Alanine racemase, N-terminal domain JRI60_50475 PF00561 alpha/beta hydrolase fold JRI60_50485 PF12697 Alpha/beta hydrolase family JRI60_50500 PF13193 AMP-binding enzyme C-terminal domain JRI60_50500 PF00501 AMP-binding enzyme JRI60_50505 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_50505 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_50525 PF00082 Subtilase family JRI60_50525 PF05922 Peptidase inhibitor I9 JRI60_50530 PF01790 Prolipoprotein diacylglyceryl transferase JRI60_50540 PF01209 ubiE/COQ5 methyltransferase family JRI60_50545 PF12680 SnoaL-like domain JRI60_50545 PF04542 Sigma-70 region 2 JRI60_50545 PF08281 Sigma-70, region 4 JRI60_50550 PF01593 Flavin containing amine oxidoreductase JRI60_50555 PF00561 alpha/beta hydrolase fold JRI60_50560 PF00581 Rhodanese-like domain JRI60_50565 PF03449 Transcription elongation factor, N-terminal JRI60_50565 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_50570 PF00672 HAMP domain JRI60_50570 PF01627 Hpt domain JRI60_50570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_50570 PF00512 His Kinase A (phospho-acceptor) domain JRI60_50570 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_50570 PF00072 Response regulator receiver domain JRI60_50575 PF00672 HAMP domain JRI60_50575 PF00512 His Kinase A (phospho-acceptor) domain JRI60_50575 PF13426 PAS domain JRI60_50575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_50580 PF00072 Response regulator receiver domain JRI60_50580 PF13188 PAS domain JRI60_50580 PF00512 His Kinase A (phospho-acceptor) domain JRI60_50580 PF08448 PAS fold JRI60_50580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_50605 PF00561 alpha/beta hydrolase fold JRI60_50635 PF02566 OsmC-like protein JRI60_50640 PF00296 Luciferase-like monooxygenase JRI60_50645 PF01047 MarR family JRI60_50675 PF03793 PASTA domain JRI60_50675 PF00069 Protein kinase domain JRI60_50680 PF00171 Aldehyde dehydrogenase family JRI60_50690 PF00905 Penicillin binding protein transpeptidase domain JRI60_50705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_50705 PF03466 LysR substrate binding domain JRI60_50745 PF07859 alpha/beta hydrolase fold JRI60_50750 PF03171 2OG-Fe(II) oxygenase superfamily JRI60_50750 PF14226 non-haem dioxygenase in morphine synthesis N-terminal JRI60_50755 PF13409 Glutathione S-transferase, N-terminal domain JRI60_50760 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_50760 PF13191 AAA ATPase domain JRI60_50765 PF10518 TAT (twin-arginine translocation) pathway signal sequence JRI60_50765 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_50765 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding JRI60_50770 PF00158 Sigma-54 interaction domain JRI60_50770 PF02954 Bacterial regulatory protein, Fis family JRI60_50770 PF00072 Response regulator receiver domain JRI60_50775 PF00753 Metallo-beta-lactamase superfamily JRI60_50780 PF00581 Rhodanese-like domain JRI60_50785 PF01925 Sulfite exporter TauE/SafE JRI60_50800 PF02743 Cache domain JRI60_50800 PF00672 HAMP domain JRI60_50800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_50805 PF03435 Saccharopine dehydrogenase NADP binding domain JRI60_50830 PF02954 Bacterial regulatory protein, Fis family JRI60_50830 PF00158 Sigma-54 interaction domain JRI60_50830 PF00072 Response regulator receiver domain JRI60_50835 PF12728 Helix-turn-helix domain JRI60_50840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_50840 PF00672 HAMP domain JRI60_50840 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_50840 PF00512 His Kinase A (phospho-acceptor) domain JRI60_50840 PF08448 PAS fold JRI60_50845 PF13493 Domain of unknown function (DUF4118) JRI60_50845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_50845 PF02702 Osmosensitive K+ channel His kinase sensor domain JRI60_50845 PF00512 His Kinase A (phospho-acceptor) domain JRI60_50845 PF13492 GAF domain JRI60_50850 PF02669 K+-transporting ATPase, c chain JRI60_50860 PF03814 Potassium-transporting ATPase A subunit JRI60_50870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JRI60_50875 PF06167 Glucose-regulated metallo-peptidase M90 JRI60_50890 PF00484 Carbonic anhydrase JRI60_50920 PF00072 Response regulator receiver domain JRI60_50920 PF00158 Sigma-54 interaction domain JRI60_50920 PF02954 Bacterial regulatory protein, Fis family JRI60_50925 PF08448 PAS fold JRI60_50925 PF13188 PAS domain JRI60_50925 PF00512 His Kinase A (phospho-acceptor) domain JRI60_50925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_50925 PF00072 Response regulator receiver domain JRI60_50945 PF00561 alpha/beta hydrolase fold JRI60_50950 PF00128 Alpha amylase, catalytic domain JRI60_50950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_50960 PF00106 short chain dehydrogenase JRI60_50970 PF00561 alpha/beta hydrolase fold JRI60_51000 PF00672 HAMP domain JRI60_51000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_51000 PF00512 His Kinase A (phospho-acceptor) domain JRI60_51020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JRI60_51020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_51045 PF01593 Flavin containing amine oxidoreductase JRI60_51055 PF04754 Putative transposase, YhgA-like JRI60_51095 PF01510 N-acetylmuramoyl-L-alanine amidase JRI60_51095 PF01471 Putative peptidoglycan binding domain JRI60_51095 PF01476 LysM domain JRI60_51105 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_51140 PF00067 Cytochrome P450 JRI60_51150 PF13191 AAA ATPase domain JRI60_51150 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_51165 PF16655 PhoD-like phosphatase, N-terminal domain JRI60_51165 PF09423 PhoD-like phosphatase JRI60_51175 PF00072 Response regulator receiver domain JRI60_51175 PF13188 PAS domain JRI60_51175 PF08448 PAS fold JRI60_51175 PF00512 His Kinase A (phospho-acceptor) domain JRI60_51175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_51180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_51180 PF08448 PAS fold JRI60_51180 PF08447 PAS fold JRI60_51190 PF04650 YSIRK type signal peptide JRI60_51195 PF00654 Voltage gated chloride channel JRI60_51205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_51230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_51260 PF00069 Protein kinase domain JRI60_51260 PF03793 PASTA domain JRI60_51265 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_51270 PF05736 OprF membrane domain JRI60_51270 PF00691 OmpA family JRI60_51285 PF13396 Phospholipase_D-nuclease N-terminal JRI60_51285 PF13091 PLD-like domain JRI60_51295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_51310 PF00390 Malic enzyme, N-terminal domain JRI60_51310 PF03949 Malic enzyme, NAD binding domain JRI60_51315 PF07689 KaiB domain JRI60_51315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_51315 PF00512 His Kinase A (phospho-acceptor) domain JRI60_51320 PF00360 Phytochrome region JRI60_51320 PF08446 PAS fold JRI60_51320 PF00512 His Kinase A (phospho-acceptor) domain JRI60_51320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_51320 PF01590 GAF domain JRI60_51345 PF00534 Glycosyl transferases group 1 JRI60_51360 PF00512 His Kinase A (phospho-acceptor) domain JRI60_51360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_51360 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_51375 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_51395 PF00501 AMP-binding enzyme JRI60_51395 PF13193 AMP-binding enzyme C-terminal domain JRI60_51400 PF00107 Zinc-binding dehydrogenase JRI60_51400 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_51415 PF01555 DNA methylase JRI60_51445 PF03636 Glycosyl hydrolase family 65, N-terminal domain JRI60_51445 PF03632 Glycosyl hydrolase family 65 central catalytic domain JRI60_51445 PF03633 Glycosyl hydrolase family 65, C-terminal domain JRI60_51445 PF02358 Trehalose-phosphatase JRI60_51450 PF03633 Glycosyl hydrolase family 65, C-terminal domain JRI60_51450 PF03632 Glycosyl hydrolase family 65 central catalytic domain JRI60_51450 PF03636 Glycosyl hydrolase family 65, N-terminal domain JRI60_51450 PF02358 Trehalose-phosphatase JRI60_51455 PF02397 Bacterial sugar transferase JRI60_51465 PF00069 Protein kinase domain JRI60_51465 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_51520 PF00072 Response regulator receiver domain JRI60_51550 PF12891 Glycoside hydrolase family 44 JRI60_51550 PF00942 Cellulose binding domain JRI60_51565 PF02463 RecF/RecN/SMC N terminal domain JRI60_51575 PF01757 Acyltransferase family JRI60_51580 PF03808 Glycosyl transferase WecB/TagA/CpsF family JRI60_51585 PF01425 Amidase JRI60_51600 PF00582 Universal stress protein family JRI60_51610 PF13657 HipA N-terminal domain JRI60_51610 PF07804 HipA-like C-terminal domain JRI60_51620 PF00657 GDSL-like Lipase/Acylhydrolase JRI60_51620 PF00404 Dockerin type I domain JRI60_51620 PF17996 Carbohydrate esterase 2 N-terminal JRI60_51620 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_51640 PF00881 Nitroreductase family JRI60_51645 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_51650 PF12833 Helix-turn-helix domain JRI60_51650 PF02311 AraC-like ligand binding domain JRI60_51665 PF03793 PASTA domain JRI60_51665 PF00069 Protein kinase domain JRI60_51685 PF04228 Putative neutral zinc metallopeptidase JRI60_51695 PF00271 Helicase conserved C-terminal domain JRI60_51695 PF12419 SNF2 Helicase protein JRI60_51695 PF00176 SNF2 family N-terminal domain JRI60_51700 PF03330 Lytic transglycolase JRI60_51705 PF05697 Bacterial trigger factor protein (TF) JRI60_51705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_51705 PF05698 Bacterial trigger factor protein (TF) C-terminus JRI60_51715 PF03466 LysR substrate binding domain JRI60_51715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_51720 PF00561 alpha/beta hydrolase fold JRI60_51730 PF01361 Tautomerase enzyme JRI60_51750 PF02581 Thiamine monophosphate synthase JRI60_51755 PF02110 Hydroxyethylthiazole kinase family JRI60_51780 PF00196 Bacterial regulatory proteins, luxR family JRI60_51820 PF00326 Prolyl oligopeptidase family JRI60_51820 PF07676 WD40-like Beta Propeller Repeat JRI60_51840 PF03793 PASTA domain JRI60_51840 PF00069 Protein kinase domain JRI60_51845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_51845 PF00512 His Kinase A (phospho-acceptor) domain JRI60_51905 PF03793 PASTA domain JRI60_51905 PF00069 Protein kinase domain JRI60_51930 PF01139 tRNA-splicing ligase RtcB JRI60_51955 PF04389 Peptidase family M28 JRI60_51965 PF00753 Metallo-beta-lactamase superfamily JRI60_51975 PF18698 Histidine kinase sensor domain JRI60_51975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_51975 PF00512 His Kinase A (phospho-acceptor) domain JRI60_51975 PF00672 HAMP domain JRI60_51995 PF02698 DUF218 domain JRI60_52005 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain JRI60_52005 PF13018 Extended Signal Peptide of Type V secretion system JRI60_52005 PF05860 haemagglutination activity domain JRI60_52005 PF13332 Hemagglutinin repeat JRI60_52005 PF05594 Haemagluttinin repeat JRI60_52025 PF03793 PASTA domain JRI60_52025 PF00069 Protein kinase domain JRI60_52045 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_52060 PF00723 Glycosyl hydrolases family 15 JRI60_52070 PF00107 Zinc-binding dehydrogenase JRI60_52070 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_52080 PF07690 Major Facilitator Superfamily JRI60_52085 PF00072 Response regulator receiver domain JRI60_52110 PF00069 Protein kinase domain JRI60_52140 PF00069 Protein kinase domain JRI60_52155 PF00027 Cyclic nucleotide-binding domain JRI60_52155 PF07885 Ion channel JRI60_52165 PF00248 Aldo/keto reductase family JRI60_52200 PF00069 Protein kinase domain JRI60_52240 PF00069 Protein kinase domain JRI60_52285 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JRI60_52285 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JRI60_52290 PF00005 ABC transporter JRI60_52320 PF05175 Methyltransferase small domain JRI60_52340 PF06224 Winged helix DNA-binding domain JRI60_52355 PF03793 PASTA domain JRI60_52355 PF00069 Protein kinase domain JRI60_52360 PF03466 LysR substrate binding domain JRI60_52360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_52365 PF07690 Major Facilitator Superfamily JRI60_52400 PF00149 Calcineurin-like phosphoesterase JRI60_52420 PF09587 Bacterial capsule synthesis protein PGA_cap JRI60_52480 PF03793 PASTA domain JRI60_52480 PF00069 Protein kinase domain JRI60_52485 PF07690 Major Facilitator Superfamily JRI60_52515 PF01734 Patatin-like phospholipase JRI60_52545 PF01374 Glycosyl hydrolase family 46 JRI60_52550 PF00704 Glycosyl hydrolases family 18 JRI60_52550 PF06483 Chitinase C JRI60_52565 PF08447 PAS fold JRI60_52565 PF08448 PAS fold JRI60_52565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_52570 PF01209 ubiE/COQ5 methyltransferase family JRI60_52575 PF00512 His Kinase A (phospho-acceptor) domain JRI60_52575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_52575 PF00672 HAMP domain JRI60_52590 PF11741 AMIN domain JRI60_52590 PF07660 Secretin and TonB N terminus short domain JRI60_52590 PF00263 Bacterial type II and III secretion system protein JRI60_52590 PF03958 Bacterial type II/III secretion system short domain JRI60_52615 PF00308 Bacterial dnaA protein JRI60_52615 PF08299 Bacterial dnaA protein helix-turn-helix JRI60_52615 PF11638 DnaA N-terminal domain JRI60_52620 PF00468 Ribosomal protein L34 JRI60_52625 PF00825 Ribonuclease P JRI60_52630 PF01809 Putative membrane protein insertion efficiency factor JRI60_52635 PF02096 60Kd inner membrane protein JRI60_52635 PF14849 YidC periplasmic domain JRI60_52650 PF10396 GTP-binding protein TrmE N-terminus JRI60_52650 PF01926 50S ribosome-binding GTPase JRI60_52650 PF12631 MnmE helical domain JRI60_52670 PF13460 NAD(P)H-binding JRI60_52670 PF11066 Protein of unknown function (DUF2867) JRI60_52715 PF01343 Peptidase family S49 JRI60_52720 PF00561 alpha/beta hydrolase fold JRI60_52735 PF00675 Insulinase (Peptidase family M16) JRI60_52735 PF05193 Peptidase M16 inactive domain JRI60_52740 PF01209 ubiE/COQ5 methyltransferase family JRI60_52745 PF00266 Aminotransferase class-V JRI60_52760 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JRI60_52760 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JRI60_52765 PF01230 HIT domain JRI60_52775 PF08308 PEGA domain JRI60_52775 PF00069 Protein kinase domain JRI60_52790 PF00069 Protein kinase domain