locus-tag class description AAQM_0001 PF00308 Bacterial dnaA protein AAQM_0001 PF08299 Bacterial dnaA protein helix-turn-helix AAQM_0001 PF11638 DnaA N-terminal domain AAQM_0002 PF02767 DNA polymerase III beta subunit, central domain AAQM_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain AAQM_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain AAQM_0003 PF01751 Toprim domain AAQM_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0003 PF00204 DNA gyrase B AAQM_0003 PF00986 DNA gyrase B subunit, carboxyl terminus AAQM_0004 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_0005 PF14489 QueF-like protein AAQM_0010 PF00849 RNA pseudouridylate synthase AAQM_0011 PF00206 Lyase AAQM_0011 PF10397 Adenylosuccinate lyase C-terminus AAQM_0012 PF03477 ATP cone domain AAQM_0012 PF02867 Ribonucleotide reductase, barrel domain AAQM_0012 PF00317 Ribonucleotide reductase, all-alpha domain AAQM_0013 PF00268 Ribonucleotide reductase, small chain AAQM_0016 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AAQM_0019 PF01928 CYTH domain AAQM_0020 PF03063 Prismane/CO dehydrogenase family AAQM_0022 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AAQM_0022 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_0023 PF05736 OprF membrane domain AAQM_0023 PF00691 OmpA family AAQM_0024 PF00318 Ribosomal protein S2 AAQM_0025 PF00107 Zinc-binding dehydrogenase AAQM_0025 PF08240 Alcohol dehydrogenase GroES-like domain AAQM_0027 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AAQM_0027 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AAQM_0028 PF02934 GatB/GatE catalytic domain AAQM_0028 PF02637 GatB domain AAQM_0029 PF09312 SurA N-terminal domain AAQM_0029 PF00639 PPIC-type PPIASE domain AAQM_0031 PF00072 Response regulator receiver domain AAQM_0031 PF00486 Transcriptional regulatory protein, C terminal AAQM_0032 PF08447 PAS fold AAQM_0032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0032 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0032 PF00989 PAS fold AAQM_0033 PF02589 LUD domain AAQM_0034 PF13183 4Fe-4S dicluster domain AAQM_0034 PF02589 LUD domain AAQM_0034 PF11870 Domain of unknown function (DUF3390) AAQM_0035 PF02754 Cysteine-rich domain AAQM_0037 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AAQM_0037 PF01872 RibD C-terminal domain AAQM_0038 PF00364 Biotin-requiring enzyme AAQM_0039 PF00289 Biotin carboxylase, N-terminal domain AAQM_0039 PF02785 Biotin carboxylase C-terminal domain AAQM_0039 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AAQM_0040 PF00271 Helicase conserved C-terminal domain AAQM_0040 PF00270 DEAD/DEAH box helicase AAQM_0041 PF01384 Phosphate transporter family AAQM_0043 PF13537 Glutamine amidotransferase domain AAQM_0043 PF00733 Asparagine synthase AAQM_0045 PF00881 Nitroreductase family AAQM_0046 PF13085 2Fe-2S iron-sulfur cluster binding domain AAQM_0047 PF00890 FAD binding domain AAQM_0047 PF02910 Fumarate reductase flavoprotein C-term AAQM_0049 PF13638 PIN domain AAQM_0049 PF02562 PhoH-like protein AAQM_0051 PF12002 MgsA AAA+ ATPase C terminal AAQM_0051 PF05496 Holliday junction DNA helicase RuvB P-loop domain AAQM_0051 PF01661 Macro domain AAQM_0051 PF16193 AAA C-terminal domain AAQM_0052 PF00849 RNA pseudouridylate synthase AAQM_0052 PF01479 S4 domain AAQM_0053 PF00571 CBS domain AAQM_0053 PF01380 SIS domain AAQM_0054 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AAQM_0054 PF00753 Metallo-beta-lactamase superfamily AAQM_0054 PF17770 Ribonuclease J C-terminal domain AAQM_0055 PF00398 Ribosomal RNA adenine dimethylase AAQM_0056 PF00977 Histidine biosynthesis protein AAQM_0059 PF04055 Radical SAM superfamily AAQM_0060 PF00749 tRNA synthetases class I (E and Q), catalytic domain AAQM_0061 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AAQM_0062 PF00486 Transcriptional regulatory protein, C terminal AAQM_0062 PF00072 Response regulator receiver domain AAQM_0063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0067 PF00873 AcrB/AcrD/AcrF family AAQM_0068 PF04264 YceI-like domain AAQM_0070 PF01554 MatE AAQM_0071 PF00742 Homoserine dehydrogenase AAQM_0071 PF01842 ACT domain AAQM_0071 PF03447 Homoserine dehydrogenase, NAD binding domain AAQM_0072 PF00155 Aminotransferase class I and II AAQM_0074 PF08032 RNA 2'-O ribose methyltransferase substrate binding AAQM_0074 PF00588 SpoU rRNA Methylase family AAQM_0075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AAQM_0076 PF01197 Ribosomal protein L31 AAQM_0083 PF14659 Phage integrase, N-terminal SAM-like domain AAQM_0083 PF00589 Phage integrase family AAQM_0099 PF02222 ATP-grasp domain AAQM_0101 PF01678 Diaminopimelate epimerase AAQM_0102 PF01121 Dephospho-CoA kinase AAQM_0103 PF17284 Spermidine synthase tetramerisation domain AAQM_0104 PF02769 AIR synthase related protein, C-terminal domain AAQM_0104 PF00586 AIR synthase related protein, N-terminal domain AAQM_0105 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AAQM_0105 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AAQM_0106 PF17954 Quercetinase C-terminal cupin domain AAQM_0106 PF02678 Pirin AAQM_0107 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AAQM_0109 PF01047 MarR family AAQM_0110 PF00266 Aminotransferase class-V AAQM_0111 PF13393 Histidyl-tRNA synthetase AAQM_0112 PF00709 Adenylosuccinate synthetase AAQM_0114 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AAQM_0114 PF00117 Glutamine amidotransferase class-I AAQM_0118 PF02542 YgbB family AAQM_0118 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AAQM_0121 PF01964 Radical SAM ThiC family AAQM_0122 PF10609 NUBPL iron-transfer P-loop NTPase AAQM_0122 PF01883 Iron-sulfur cluster assembly protein AAQM_0124 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AAQM_0124 PF01502 Phosphoribosyl-AMP cyclohydrolase AAQM_0127 PF01063 Amino-transferase class IV AAQM_0129 PF00925 GTP cyclohydrolase II AAQM_0131 PF02310 B12 binding domain AAQM_0131 PF02965 Vitamin B12 dependent methionine synthase, activation domain AAQM_0131 PF00809 Pterin binding enzyme AAQM_0131 PF02574 Homocysteine S-methyltransferase AAQM_0131 PF02607 B12 binding domain AAQM_0132 PF00578 AhpC/TSA family AAQM_0132 PF10417 C-terminal domain of 1-Cys peroxiredoxin AAQM_0135 PF00465 Iron-containing alcohol dehydrogenase AAQM_0136 PF01627 Hpt domain AAQM_0136 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0136 PF00497 Bacterial extracellular solute-binding proteins, family 3 AAQM_0136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0136 PF00072 Response regulator receiver domain AAQM_0136 PF00989 PAS fold AAQM_0138 PF00768 D-alanyl-D-alanine carboxypeptidase AAQM_0138 PF07943 Penicillin-binding protein 5, C-terminal domain AAQM_0141 PF02664 S-Ribosylhomocysteinase (LuxS) AAQM_0145 PF07273 Protein of unknown function (DUF1439) AAQM_0146 PF02405 Permease MlaE AAQM_0147 PF00005 ABC transporter AAQM_0147 PF09383 NIL domain AAQM_0150 PF05145 Transition state regulatory protein AbrB AAQM_0151 PF01638 HxlR-like helix-turn-helix AAQM_0152 PF02525 Flavodoxin-like fold AAQM_0153 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AAQM_0154 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AAQM_0154 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AAQM_0156 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AAQM_0157 PF13419 Haloacid dehalogenase-like hydrolase AAQM_0158 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AAQM_0159 PF00380 Ribosomal protein S9/S16 AAQM_0160 PF00572 Ribosomal protein L13 AAQM_0161 PF02702 Osmosensitive K+ channel His kinase sensor domain AAQM_0161 PF13493 Domain of unknown function (DUF4118) AAQM_0161 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0162 PF00072 Response regulator receiver domain AAQM_0162 PF00486 Transcriptional regulatory protein, C terminal AAQM_0164 PF01895 PhoU domain AAQM_0165 PF00005 ABC transporter AAQM_0166 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_0167 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_0168 PF12849 PBP superfamily domain AAQM_0170 PF03462 PCRF domain AAQM_0170 PF00472 RF-1 domain AAQM_0171 PF01649 Ribosomal protein S20 AAQM_0172 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AAQM_0172 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AAQM_0172 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AAQM_0172 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AAQM_0173 PF01252 Signal peptidase (SPase) II AAQM_0174 PF00330 Aconitase family (aconitate hydratase) AAQM_0175 PF12804 MobA-like NTP transferase domain AAQM_0176 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_0179 PF00453 Ribosomal protein L20 AAQM_0180 PF01632 Ribosomal protein L35 AAQM_0181 PF05198 Translation initiation factor IF-3, N-terminal domain AAQM_0181 PF00707 Translation initiation factor IF-3, C-terminal domain AAQM_0182 PF03129 Anticodon binding domain AAQM_0182 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AAQM_0182 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AAQM_0189 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AAQM_0189 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AAQM_0193 PF00501 AMP-binding enzyme AAQM_0193 PF08659 KR domain AAQM_0193 PF00550 Phosphopantetheine attachment site AAQM_0193 PF16197 Ketoacyl-synthetase C-terminal extension AAQM_0193 PF00109 Beta-ketoacyl synthase, N-terminal domain AAQM_0193 PF02801 Beta-ketoacyl synthase, C-terminal domain AAQM_0193 PF14765 Polyketide synthase dehydratase AAQM_0193 PF00668 Condensation domain AAQM_0193 PF13193 AMP-binding enzyme C-terminal domain AAQM_0194 PF00550 Phosphopantetheine attachment site AAQM_0196 PF00005 ABC transporter AAQM_0202 PF00221 Aromatic amino acid lyase AAQM_0206 PF04820 Tryptophan halogenase AAQM_0207 PF00550 Phosphopantetheine attachment site AAQM_0208 PF00109 Beta-ketoacyl synthase, N-terminal domain AAQM_0208 PF02801 Beta-ketoacyl synthase, C-terminal domain AAQM_0211 PF12697 Alpha/beta hydrolase family AAQM_0214 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AAQM_0214 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AAQM_0214 PF13288 DXP reductoisomerase C-terminal domain AAQM_0218 PF00814 Glycoprotease family AAQM_0220 PF03853 YjeF-related protein N-terminus AAQM_0220 PF01256 Carbohydrate kinase AAQM_0221 PF03091 CutA1 divalent ion tolerance protein AAQM_0222 PF05690 Thiazole biosynthesis protein ThiG AAQM_0230 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AAQM_0231 PF08502 LeuA allosteric (dimerisation) domain AAQM_0231 PF00682 HMGL-like AAQM_0234 PF01699 Sodium/calcium exchanger protein AAQM_0235 PF02203 Tar ligand binding domain homologue AAQM_0235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_0235 PF00672 HAMP domain AAQM_0238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0238 PF08447 PAS fold AAQM_0238 PF08448 PAS fold AAQM_0239 PF00486 Transcriptional regulatory protein, C terminal AAQM_0239 PF00072 Response regulator receiver domain AAQM_0241 PF03412 Peptidase C39 family AAQM_0241 PF00005 ABC transporter AAQM_0241 PF00664 ABC transporter transmembrane region AAQM_0244 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0244 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0244 PF00989 PAS fold AAQM_0245 PF02779 Transketolase, pyrimidine binding domain AAQM_0245 PF02780 Transketolase, C-terminal domain AAQM_0245 PF00456 Transketolase, thiamine diphosphate binding domain AAQM_0248 PF03788 LrgA family AAQM_0249 PF04172 LrgB-like family AAQM_0251 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AAQM_0255 PF01740 STAS domain AAQM_0255 PF00916 Sulfate permease family AAQM_0256 PF01553 Acyltransferase AAQM_0256 PF00501 AMP-binding enzyme AAQM_0258 PF08335 GlnD PII-uridylyltransferase AAQM_0258 PF01966 HD domain AAQM_0260 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AAQM_0260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0260 PF17203 Single cache domain 3 AAQM_0260 PF00989 PAS fold AAQM_0263 PF00909 Ammonium Transporter Family AAQM_0264 PF00543 Nitrogen regulatory protein P-II AAQM_0265 PF00909 Ammonium Transporter Family AAQM_0266 PF00543 Nitrogen regulatory protein P-II AAQM_0268 PF02154 Flagellar motor switch protein FliM AAQM_0268 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AAQM_0269 PF02119 Flagellar P-ring protein AAQM_0271 PF01313 Bacterial export proteins, family 3 AAQM_0276 PF02107 Flagellar L-ring protein AAQM_0277 PF00460 Flagella basal body rod protein AAQM_0277 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_0278 PF07195 Flagellar hook-associated protein 2 C-terminus AAQM_0278 PF02465 Flagellar hook-associated protein 2 N-terminus AAQM_0279 PF02561 Flagellar protein FliS AAQM_0281 PF01171 PP-loop family AAQM_0282 PF18693 TRAM domain AAQM_0282 PF04055 Radical SAM superfamily AAQM_0282 PF00919 Uncharacterized protein family UPF0004 AAQM_0283 PF02569 Pantoate-beta-alanine ligase AAQM_0284 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_0285 PF01648 4'-phosphopantetheinyl transferase superfamily AAQM_0286 PF03652 Holliday junction resolvase AAQM_0289 PF00923 Transaldolase/Fructose-6-phosphate aldolase AAQM_0290 PF01474 Class-II DAHP synthetase family AAQM_0291 PF03502 Nucleoside-specific channel-forming protein, Tsx AAQM_0292 PF03960 ArsC family AAQM_0293 PF02686 Glu-tRNAGln amidotransferase C subunit AAQM_0294 PF01702 Queuine tRNA-ribosyltransferase AAQM_0296 PF00155 Aminotransferase class I and II AAQM_0298 PF02875 Mur ligase family, glutamate ligase domain AAQM_0298 PF08245 Mur ligase middle domain AAQM_0298 PF01225 Mur ligase family, catalytic domain AAQM_0300 PF04748 Divergent polysaccharide deacetylase AAQM_0301 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AAQM_0301 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AAQM_0302 PF00773 RNB domain AAQM_0303 PF02623 FliW protein AAQM_0305 PF01250 Ribosomal protein S6 AAQM_0306 PF00436 Single-strand binding protein family AAQM_0307 PF01084 Ribosomal protein S18 AAQM_0309 PF09190 DALR domain AAQM_0309 PF01406 tRNA synthetases class I (C) catalytic domain AAQM_0310 PF13184 NusA-like KH domain AAQM_0310 PF08529 NusA N-terminal domain AAQM_0312 PF00919 Uncharacterized protein family UPF0004 AAQM_0312 PF01938 TRAM domain AAQM_0312 PF04055 Radical SAM superfamily AAQM_0313 PF04028 Domain of unknown function (DUF374) AAQM_0315 PF04055 Radical SAM superfamily AAQM_0317 PF00484 Carbonic anhydrase AAQM_0318 PF00155 Aminotransferase class I and II AAQM_0319 PF02021 Uncharacterised protein family UPF0102 AAQM_0322 PF00691 OmpA family AAQM_0322 PF00223 Photosystem I psaA/psaB protein AAQM_0323 PF00224 Pyruvate kinase, barrel domain AAQM_0323 PF02887 Pyruvate kinase, alpha/beta domain AAQM_0323 PF00391 PEP-utilising enzyme, mobile domain AAQM_0325 PF00202 Aminotransferase class-III AAQM_0327 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AAQM_0327 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AAQM_0328 PF00425 chorismate binding enzyme AAQM_0329 PF01063 Amino-transferase class IV AAQM_0332 PF03591 AzlC protein AAQM_0333 PF05437 Branched-chain amino acid transport protein (AzlD) AAQM_0334 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AAQM_0334 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AAQM_0335 PF02504 Fatty acid synthesis protein AAQM_0336 PF01783 Ribosomal L32p protein family AAQM_0338 PF00334 Nucleoside diphosphate kinase AAQM_0339 PF00037 4Fe-4S binding domain AAQM_0340 PF00578 AhpC/TSA family AAQM_0340 PF10417 C-terminal domain of 1-Cys peroxiredoxin AAQM_0341 PF07498 Rho termination factor, N-terminal domain AAQM_0341 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AAQM_0341 PF07497 Rho termination factor, RNA-binding domain AAQM_0342 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AAQM_0342 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AAQM_0343 PF01177 Asp/Glu/Hydantoin racemase AAQM_0344 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AAQM_0344 PF12170 DNA polymerase III tau subunit V interacting with alpha AAQM_0344 PF12169 DNA polymerase III subunits gamma and tau domain III AAQM_0346 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AAQM_0346 PF03900 Porphobilinogen deaminase, C-terminal domain AAQM_0348 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0348 PF00072 Response regulator receiver domain AAQM_0349 PF04303 PrpF protein AAQM_0350 PF00330 Aconitase family (aconitate hydratase) AAQM_0350 PF00694 Aconitase C-terminal domain AAQM_0351 PF00285 Citrate synthase, C-terminal domain AAQM_0354 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AAQM_0354 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AAQM_0359 PF09382 RQC domain AAQM_0359 PF16124 RecQ zinc-binding AAQM_0359 PF00570 HRDC domain AAQM_0359 PF00271 Helicase conserved C-terminal domain AAQM_0359 PF00270 DEAD/DEAH box helicase AAQM_0360 PF13649 Methyltransferase domain AAQM_0363 PF01863 Protein of unknown function DUF45 AAQM_0366 PF00350 Dynamin family AAQM_0367 PF00350 Dynamin family AAQM_0368 PF13183 4Fe-4S dicluster domain AAQM_0368 PF13085 2Fe-2S iron-sulfur cluster binding domain AAQM_0369 PF02910 Fumarate reductase flavoprotein C-term AAQM_0369 PF00890 FAD binding domain AAQM_0370 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AAQM_0371 PF00361 Proton-conducting membrane transporter AAQM_0372 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AAQM_0372 PF00361 Proton-conducting membrane transporter AAQM_0373 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AAQM_0373 PF00361 Proton-conducting membrane transporter AAQM_0374 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AAQM_0375 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AAQM_0376 PF12838 4Fe-4S dicluster domain AAQM_0377 PF00146 NADH dehydrogenase AAQM_0378 PF00384 Molybdopterin oxidoreductase AAQM_0378 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AAQM_0378 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AAQM_0379 PF00285 Citrate synthase, C-terminal domain AAQM_0380 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AAQM_0380 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AAQM_0380 PF10531 SLBB domain AAQM_0382 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AAQM_0382 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AAQM_0383 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AAQM_0384 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AAQM_0385 PF00155 Aminotransferase class I and II AAQM_0386 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AAQM_0387 PF12821 Threonine/Serine exporter, ThrE AAQM_0387 PF06738 Putative threonine/serine exporter AAQM_0388 PF06738 Putative threonine/serine exporter AAQM_0390 PF03309 Type III pantothenate kinase AAQM_0391 PF01634 ATP phosphoribosyltransferase AAQM_0393 PF00672 HAMP domain AAQM_0393 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_0393 PF02203 Tar ligand binding domain homologue AAQM_0395 PF00579 tRNA synthetases class I (W and Y) AAQM_0398 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AAQM_0398 PF02403 Seryl-tRNA synthetase N-terminal domain AAQM_0401 PF08447 PAS fold AAQM_0401 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_0405 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AAQM_0406 PF12801 4Fe-4S binding domain AAQM_0406 PF00037 4Fe-4S binding domain AAQM_0407 PF12838 4Fe-4S dicluster domain AAQM_0407 PF12800 4Fe-4S binding domain AAQM_0408 PF10518 TAT (twin-arginine translocation) pathway signal sequence AAQM_0408 PF01568 Molydopterin dinucleotide binding domain AAQM_0408 PF00384 Molybdopterin oxidoreductase AAQM_0408 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AAQM_0409 PF03480 Bacterial extracellular solute-binding protein, family 7 AAQM_0410 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AAQM_0411 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AAQM_0412 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0412 PF08448 PAS fold AAQM_0412 PF08447 PAS fold AAQM_0413 PF00072 Response regulator receiver domain AAQM_0414 PF03737 Aldolase/RraA AAQM_0415 PF10414 Sirohaem synthase dimerisation region AAQM_0415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AAQM_0418 PF00591 Glycosyl transferase family, a/b domain AAQM_0418 PF02885 Glycosyl transferase family, helical bundle domain AAQM_0419 PF04055 Radical SAM superfamily AAQM_0419 PF06463 Molybdenum Cofactor Synthesis C AAQM_0422 PF02222 ATP-grasp domain AAQM_0422 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AAQM_0423 PF00731 AIR carboxylase AAQM_0424 PF00312 Ribosomal protein S15 AAQM_0425 PF02082 Transcriptional regulator AAQM_0428 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0428 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0428 PF00672 HAMP domain AAQM_0429 PF00072 Response regulator receiver domain AAQM_0429 PF00486 Transcriptional regulatory protein, C terminal AAQM_0431 PF01116 Fructose-bisphosphate aldolase class-II AAQM_0432 PF00005 ABC transporter AAQM_0432 PF08402 TOBE domain AAQM_0433 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_0434 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_0435 PF13416 Bacterial extracellular solute-binding protein AAQM_0436 PF00072 Response regulator receiver domain AAQM_0436 PF00486 Transcriptional regulatory protein, C terminal AAQM_0438 PF00171 Aldehyde dehydrogenase family AAQM_0440 PF00313 'Cold-shock' DNA-binding domain AAQM_0441 PF02472 Biopolymer transport protein ExbD/TolR AAQM_0442 PF01618 MotA/TolQ/ExbB proton channel family AAQM_0444 PF00989 PAS fold AAQM_0444 PF08447 PAS fold AAQM_0444 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0444 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0445 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0445 PF00563 EAL domain AAQM_0445 PF03707 Bacterial signalling protein N terminal repeat AAQM_0446 PF01202 Shikimate kinase AAQM_0447 PF00815 Histidinol dehydrogenase AAQM_0449 PF00348 Polyprenyl synthetase AAQM_0450 PF01488 Shikimate / quinate 5-dehydrogenase AAQM_0450 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AAQM_0450 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AAQM_0451 PF04073 Aminoacyl-tRNA editing domain AAQM_0451 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AAQM_0451 PF03129 Anticodon binding domain AAQM_0452 PF05552 Conserved TM helix AAQM_0452 PF00924 Mechanosensitive ion channel AAQM_0453 PF12627 Probable RNA and SrmB- binding site of polymerase A AAQM_0453 PF01743 Poly A polymerase head domain AAQM_0453 PF01966 HD domain AAQM_0457 PF02699 Preprotein translocase subunit AAQM_0458 PF02355 Protein export membrane protein AAQM_0459 PF02355 Protein export membrane protein AAQM_0459 PF07549 SecD/SecF GG Motif AAQM_0461 PF00133 tRNA synthetases class I (I, L, M and V) AAQM_0461 PF13603 Leucyl-tRNA synthetase, Domain 2 AAQM_0461 PF09334 tRNA synthetases class I (M) AAQM_0463 PF08245 Mur ligase middle domain AAQM_0465 PF00999 Sodium/hydrogen exchanger family AAQM_0465 PF02254 TrkA-N domain AAQM_0471 PF02559 CarD-like/TRCF domain AAQM_0471 PF03461 TRCF domain AAQM_0471 PF00270 DEAD/DEAH box helicase AAQM_0471 PF17757 UvrB interaction domain AAQM_0471 PF00271 Helicase conserved C-terminal domain AAQM_0473 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0473 PF00563 EAL domain AAQM_0473 PF01590 GAF domain AAQM_0473 PF00360 Phytochrome region AAQM_0475 PF00486 Transcriptional regulatory protein, C terminal AAQM_0475 PF00072 Response regulator receiver domain AAQM_0478 PF02743 Cache domain AAQM_0478 PF00672 HAMP domain AAQM_0478 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_0479 PF00158 Sigma-54 interaction domain AAQM_0479 PF00072 Response regulator receiver domain AAQM_0479 PF02954 Bacterial regulatory protein, Fis family AAQM_0480 PF13581 Histidine kinase-like ATPase domain AAQM_0480 PF07536 HWE histidine kinase AAQM_0480 PF13426 PAS domain AAQM_0481 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0481 PF00672 HAMP domain AAQM_0481 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0482 PF13277 YmdB-like protein AAQM_0485 PF01209 ubiE/COQ5 methyltransferase family AAQM_0486 PF13742 OB-fold nucleic acid binding domain AAQM_0486 PF02601 Exonuclease VII, large subunit AAQM_0487 PF01584 CheW-like domain AAQM_0488 PF02954 Bacterial regulatory protein, Fis family AAQM_0488 PF00072 Response regulator receiver domain AAQM_0488 PF00158 Sigma-54 interaction domain AAQM_0489 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AAQM_0491 PF02261 Aspartate decarboxylase AAQM_0492 PF02575 YbaB/EbfC DNA-binding family AAQM_0493 PF00348 Polyprenyl synthetase AAQM_0494 PF00166 Chaperonin 10 Kd subunit AAQM_0495 PF00118 TCP-1/cpn60 chaperonin family AAQM_0497 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0497 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0497 PF00672 HAMP domain AAQM_0498 PF00486 Transcriptional regulatory protein, C terminal AAQM_0498 PF00072 Response regulator receiver domain AAQM_0499 PF00149 Calcineurin-like phosphoesterase AAQM_0504 PF02687 FtsX-like permease family AAQM_0504 PF12704 MacB-like periplasmic core domain AAQM_0504 PF00005 ABC transporter AAQM_0505 PF12704 MacB-like periplasmic core domain AAQM_0505 PF02687 FtsX-like permease family AAQM_0505 PF00005 ABC transporter AAQM_0506 PF00459 Inositol monophosphatase family AAQM_0507 PF01380 SIS domain AAQM_0510 PF02772 S-adenosylmethionine synthetase, central domain AAQM_0510 PF02773 S-adenosylmethionine synthetase, C-terminal domain AAQM_0510 PF00438 S-adenosylmethionine synthetase, N-terminal domain AAQM_0511 PF01039 Carboxyl transferase domain AAQM_0511 PF17848 Acetyl-coA carboxylase zinc finger domain AAQM_0512 PF02581 Thiamine monophosphate synthase AAQM_0513 PF02590 Predicted SPOUT methyltransferase AAQM_0515 PF01207 Dihydrouridine synthase (Dus) AAQM_0517 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_0517 PF17862 AAA+ lid domain AAQM_0517 PF01434 Peptidase family M41 AAQM_0518 PF00682 HMGL-like AAQM_0518 PF08502 LeuA allosteric (dimerisation) domain AAQM_0521 PF00488 MutS domain V AAQM_0521 PF05192 MutS domain III AAQM_0521 PF05188 MutS domain II AAQM_0521 PF05190 MutS family domain IV AAQM_0521 PF01624 MutS domain I AAQM_0522 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0523 PF00977 Histidine biosynthesis protein AAQM_0524 PF08338 Domain of unknown function (DUF1731) AAQM_0524 PF01370 NAD dependent epimerase/dehydratase family AAQM_0525 PF00117 Glutamine amidotransferase class-I AAQM_0528 PF00009 Elongation factor Tu GTP binding domain AAQM_0528 PF03144 Elongation factor Tu domain 2 AAQM_0528 PF06421 GTP-binding protein LepA C-terminus AAQM_0528 PF00679 Elongation factor G C-terminus AAQM_0529 PF05736 OprF membrane domain AAQM_0529 PF00691 OmpA family AAQM_0530 PF05736 OprF membrane domain AAQM_0530 PF00691 OmpA family AAQM_0531 PF14572 Phosphoribosyl synthetase-associated domain AAQM_0531 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AAQM_0535 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AAQM_0536 PF00557 Metallopeptidase family M24 AAQM_0536 PF01321 Creatinase/Prolidase N-terminal domain AAQM_0537 PF01220 Dehydroquinase class II AAQM_0538 PF01979 Amidohydrolase family AAQM_0539 PF01343 Peptidase family S49 AAQM_0540 PF00871 Acetokinase family AAQM_0541 PF01515 Phosphate acetyl/butaryl transferase AAQM_0542 PF00871 Acetokinase family AAQM_0544 PF00929 Exonuclease AAQM_0546 PF00474 Sodium:solute symporter family AAQM_0548 PF00929 Exonuclease AAQM_0550 PF00474 Sodium:solute symporter family AAQM_0552 PF00072 Response regulator receiver domain AAQM_0552 PF00486 Transcriptional regulatory protein, C terminal AAQM_0553 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0553 PF00672 HAMP domain AAQM_0553 PF13426 PAS domain AAQM_0562 PF00994 Probable molybdopterin binding domain AAQM_0562 PF18146 Damage-inducible protein CinA KH domain AAQM_0562 PF02464 Competence-damaged protein AAQM_0563 PF06039 Malate:quinone oxidoreductase (Mqo) AAQM_0564 PF00133 tRNA synthetases class I (I, L, M and V) AAQM_0564 PF08264 Anticodon-binding domain of tRNA AAQM_0568 PF08245 Mur ligase middle domain AAQM_0568 PF02875 Mur ligase family, glutamate ligase domain AAQM_0569 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0569 PF08447 PAS fold AAQM_0569 PF08448 PAS fold AAQM_0572 PF01882 Protein of unknown function DUF58 AAQM_0573 PF17863 AAA lid domain AAQM_0573 PF07726 ATPase family associated with various cellular activities (AAA) AAQM_0574 PF00318 Ribosomal protein S2 AAQM_0575 PF00889 Elongation factor TS AAQM_0576 PF00005 ABC transporter AAQM_0578 PF00625 Guanylate kinase AAQM_0579 PF08448 PAS fold AAQM_0579 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0579 PF00563 EAL domain AAQM_0580 PF00403 Heavy-metal-associated domain AAQM_0583 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AAQM_0583 PF00005 ABC transporter AAQM_0584 PF00762 Ferrochelatase AAQM_0585 PF01871 AMMECR1 AAQM_0586 PF01875 Memo-like protein AAQM_0587 PF02698 DUF218 domain AAQM_0588 PF00005 ABC transporter AAQM_0589 PF00950 ABC 3 transport family AAQM_0590 PF02690 Na+/Pi-cotransporter AAQM_0595 PF13509 S1 domain AAQM_0595 PF17783 CvfB-like winged helix domain AAQM_0596 PF08534 Redoxin AAQM_0599 PF00174 Oxidoreductase molybdopterin binding domain AAQM_0600 PF01794 Ferric reductase like transmembrane component AAQM_0601 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AAQM_0602 PF00873 AcrB/AcrD/AcrF family AAQM_0604 PF14659 Phage integrase, N-terminal SAM-like domain AAQM_0604 PF00589 Phage integrase family AAQM_0610 PF13361 UvrD-like helicase C-terminal domain AAQM_0610 PF00580 UvrD/REP helicase N-terminal domain AAQM_0611 PF02254 TrkA-N domain AAQM_0611 PF02080 TrkA-C domain AAQM_0611 PF00999 Sodium/hydrogen exchanger family AAQM_0612 PF00174 Oxidoreductase molybdopterin binding domain AAQM_0613 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AAQM_0624 PF00753 Metallo-beta-lactamase superfamily AAQM_0627 PF08264 Anticodon-binding domain of tRNA AAQM_0627 PF00133 tRNA synthetases class I (I, L, M and V) AAQM_0627 PF10458 Valyl tRNA synthetase tRNA binding arm AAQM_0628 PF01554 MatE AAQM_0629 PF00583 Acetyltransferase (GNAT) family AAQM_0631 PF09962 Uncharacterized conserved protein (DUF2196) AAQM_0632 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AAQM_0634 PF00873 AcrB/AcrD/AcrF family AAQM_0635 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AAQM_0636 PF06339 Ectoine synthase AAQM_0637 PF00202 Aminotransferase class-III AAQM_0638 PF00583 Acetyltransferase (GNAT) family AAQM_0640 PF01551 Peptidase family M23 AAQM_0640 PF04225 Opacity-associated protein A LysM-like domain AAQM_0642 PF00586 AIR synthase related protein, N-terminal domain AAQM_0642 PF02769 AIR synthase related protein, C-terminal domain AAQM_0642 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AAQM_0643 PF02142 MGS-like domain AAQM_0643 PF01808 AICARFT/IMPCHase bienzyme AAQM_0644 PF08448 PAS fold AAQM_0644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0644 PF08447 PAS fold AAQM_0645 PF00202 Aminotransferase class-III AAQM_0645 PF06968 Biotin and Thiamin Synthesis associated domain AAQM_0645 PF04055 Radical SAM superfamily AAQM_0648 PF01557 Fumarylacetoacetate (FAA) hydrolase family AAQM_0649 PF01641 SelR domain AAQM_0650 PF01625 Peptide methionine sulfoxide reductase AAQM_0653 PF01351 Ribonuclease HII AAQM_0655 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0656 PF17871 AAA lid domain AAQM_0656 PF02861 Clp amino terminal domain, pathogenicity island component AAQM_0656 PF10431 C-terminal, D2-small domain, of ClpB protein AAQM_0656 PF07724 AAA domain (Cdc48 subfamily) AAQM_0656 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_0657 PF00468 Ribosomal protein L34 AAQM_0658 PF00825 Ribonuclease P AAQM_0659 PF01809 Putative membrane protein insertion efficiency factor AAQM_0660 PF14849 YidC periplasmic domain AAQM_0660 PF02096 60Kd inner membrane protein AAQM_0662 PF12631 MnmE helical domain AAQM_0662 PF10396 GTP-binding protein TrmE N-terminus AAQM_0662 PF01926 50S ribosome-binding GTPase AAQM_0664 PF00300 Histidine phosphatase superfamily (branch 1) AAQM_0665 PF01435 Peptidase family M48 AAQM_0666 PF01264 Chorismate synthase AAQM_0667 PF00035 Double-stranded RNA binding motif AAQM_0667 PF14622 Ribonuclease-III-like AAQM_0669 PF16730 DnaG-primase C-terminal, helicase-binding domain AAQM_0669 PF08275 DNA primase catalytic core, N-terminal domain AAQM_0669 PF01807 CHC2 zinc finger AAQM_0669 PF13662 Toprim domain AAQM_0670 PF01042 Endoribonuclease L-PSP AAQM_0671 PF00829 Ribosomal prokaryotic L21 protein AAQM_0672 PF01016 Ribosomal L27 protein AAQM_0673 PF01018 GTP1/OBG AAQM_0673 PF01926 50S ribosome-binding GTPase AAQM_0674 PF00696 Amino acid kinase family AAQM_0675 PF02911 Formyl transferase, C-terminal domain AAQM_0675 PF00551 Formyl transferase AAQM_0677 PF08279 HTH domain AAQM_0677 PF03099 Biotin/lipoate A/B protein ligase family AAQM_0677 PF02237 Biotin protein ligase C terminal domain AAQM_0678 PF13614 AAA domain AAQM_0679 PF17762 HTH domain found in ParB protein AAQM_0679 PF02195 ParB-like nuclease domain AAQM_0681 PF00430 ATP synthase B/B' CF(0) AAQM_0682 PF00213 ATP synthase delta (OSCP) subunit AAQM_0683 PF00306 ATP synthase alpha/beta chain, C terminal domain AAQM_0683 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AAQM_0683 PF02874 ATP synthase alpha/beta family, beta-barrel domain AAQM_0684 PF00231 ATP synthase AAQM_0685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AAQM_0685 PF02874 ATP synthase alpha/beta family, beta-barrel domain AAQM_0686 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AAQM_0687 PF01618 MotA/TolQ/ExbB proton channel family AAQM_0688 PF02472 Biopolymer transport protein ExbD/TolR AAQM_0690 PF04052 TolB amino-terminal domain AAQM_0691 PF00210 Ferritin-like domain AAQM_0692 PF01389 OmpA-like transmembrane domain AAQM_0692 PF00691 OmpA family AAQM_0694 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AAQM_0695 PF00698 Acyl transferase domain AAQM_0696 PF01048 Phosphorylase superfamily AAQM_0697 PF01235 Sodium:alanine symporter family AAQM_0698 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0698 PF02743 Cache domain AAQM_0698 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0699 PF00486 Transcriptional regulatory protein, C terminal AAQM_0699 PF00072 Response regulator receiver domain AAQM_0700 PF10415 Fumarase C C-terminus AAQM_0700 PF00206 Lyase AAQM_0702 PF01368 DHH family AAQM_0702 PF02833 DHHA2 domain AAQM_0703 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AAQM_0703 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AAQM_0704 PF03352 Methyladenine glycosylase AAQM_0704 PF13302 Acetyltransferase (GNAT) domain AAQM_0704 PF13673 Acetyltransferase (GNAT) domain AAQM_0704 PF00117 Glutamine amidotransferase class-I AAQM_0704 PF00958 GMP synthase C terminal domain AAQM_0705 PF12833 Helix-turn-helix domain AAQM_0705 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AAQM_0706 PF00682 HMGL-like AAQM_0706 PF08502 LeuA allosteric (dimerisation) domain AAQM_0707 PF00491 Arginase family AAQM_0710 PF07715 TonB-dependent Receptor Plug Domain AAQM_0710 PF00593 TonB dependent receptor AAQM_0711 PF05958 tRNA (Uracil-5-)-methyltransferase AAQM_0714 PF08713 DNA alkylation repair enzyme AAQM_0715 PF04073 Aminoacyl-tRNA editing domain AAQM_0716 PF05088 Bacterial NAD-glutamate dehydrogenase AAQM_0719 PF00563 EAL domain AAQM_0719 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0719 PF08448 PAS fold AAQM_0722 PF04403 Paraquat-inducible protein A AAQM_0723 PF02470 MlaD protein AAQM_0725 PF00072 Response regulator receiver domain AAQM_0726 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0726 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0726 PF00672 HAMP domain AAQM_0726 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AAQM_0726 PF00072 Response regulator receiver domain AAQM_0726 PF01627 Hpt domain AAQM_0727 PF00072 Response regulator receiver domain AAQM_0728 PF07568 Histidine kinase AAQM_0728 PF13581 Histidine kinase-like ATPase domain AAQM_0728 PF13426 PAS domain AAQM_0731 PF04076 Bacterial OB fold (BOF) protein AAQM_0732 PF08521 Two-component sensor kinase N-terminal AAQM_0732 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0732 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0733 PF00072 Response regulator receiver domain AAQM_0733 PF00486 Transcriptional regulatory protein, C terminal AAQM_0735 PF00141 Peroxidase AAQM_0736 PF00230 Major intrinsic protein AAQM_0737 PF00183 Hsp90 protein AAQM_0743 PF03746 LamB/YcsF family AAQM_0745 PF02626 Carboxyltransferase domain, subdomain A and B AAQM_0747 PF00563 EAL domain AAQM_0750 PF03880 DbpA RNA binding domain AAQM_0750 PF00270 DEAD/DEAH box helicase AAQM_0750 PF00271 Helicase conserved C-terminal domain AAQM_0751 PF03707 Bacterial signalling protein N terminal repeat AAQM_0751 PF00563 EAL domain AAQM_0751 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0754 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AAQM_0754 PF01243 Pyridoxamine 5'-phosphate oxidase AAQM_0756 PF01242 6-pyruvoyl tetrahydropterin synthase AAQM_0757 PF04909 Amidohydrolase AAQM_0758 PF01502 Phosphoribosyl-AMP cyclohydrolase AAQM_0758 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AAQM_0759 PF01258 Prokaryotic dksA/traR C4-type zinc finger AAQM_0764 PF08447 PAS fold AAQM_0764 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0764 PF08448 PAS fold AAQM_0766 PF17910 FeoB cytosolic helical domain AAQM_0766 PF07664 Ferrous iron transport protein B C terminus AAQM_0766 PF02421 Ferrous iron transport protein B AAQM_0766 PF04023 FeoA domain AAQM_0766 PF07670 Nucleoside recognition AAQM_0767 PF04023 FeoA domain AAQM_0769 PF00005 ABC transporter AAQM_0770 PF10636 Hemin uptake protein hemP AAQM_0771 PF07715 TonB-dependent Receptor Plug Domain AAQM_0771 PF00593 TonB dependent receptor AAQM_0772 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0772 PF07568 Histidine kinase AAQM_0772 PF12282 Signal transduction histidine kinase AAQM_0773 PF00072 Response regulator receiver domain AAQM_0774 PF02321 Outer membrane efflux protein AAQM_0775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AAQM_0776 PF00873 AcrB/AcrD/AcrF family AAQM_0777 PF13847 Methyltransferase domain AAQM_0778 PF07715 TonB-dependent Receptor Plug Domain AAQM_0778 PF00593 TonB dependent receptor AAQM_0782 PF00586 AIR synthase related protein, N-terminal domain AAQM_0782 PF02769 AIR synthase related protein, C-terminal domain AAQM_0783 PF01142 tRNA pseudouridine synthase D (TruD) AAQM_0785 PF02203 Tar ligand binding domain homologue AAQM_0785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_0785 PF00672 HAMP domain AAQM_0786 PF07499 RuvA, C-terminal domain AAQM_0786 PF01330 RuvA N terminal domain AAQM_0787 PF01820 D-ala D-ala ligase N-terminus AAQM_0787 PF07478 D-ala D-ala ligase C-terminus AAQM_0788 PF00561 alpha/beta hydrolase fold AAQM_0789 PF01225 Mur ligase family, catalytic domain AAQM_0789 PF02875 Mur ligase family, glutamate ligase domain AAQM_0789 PF08245 Mur ligase middle domain AAQM_0792 PF01266 FAD dependent oxidoreductase AAQM_0793 PF00338 Ribosomal protein S10p/S20e AAQM_0794 PF00297 Ribosomal protein L3 AAQM_0795 PF00573 Ribosomal protein L4/L1 family AAQM_0796 PF00276 Ribosomal protein L23 AAQM_0797 PF03947 Ribosomal Proteins L2, C-terminal domain AAQM_0797 PF00181 Ribosomal Proteins L2, RNA binding domain AAQM_0798 PF00203 Ribosomal protein S19 AAQM_0799 PF00237 Ribosomal protein L22p/L17e AAQM_0800 PF07650 KH domain AAQM_0800 PF00189 Ribosomal protein S3, C-terminal domain AAQM_0801 PF00252 Ribosomal protein L16p/L10e AAQM_0802 PF00831 Ribosomal L29 protein AAQM_0803 PF00366 Ribosomal protein S17 AAQM_0804 PF00238 Ribosomal protein L14p/L23e AAQM_0805 PF00467 KOW motif AAQM_0805 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AAQM_0806 PF00673 ribosomal L5P family C-terminus AAQM_0806 PF00281 Ribosomal protein L5 AAQM_0807 PF00253 Ribosomal protein S14p/S29e AAQM_0808 PF00410 Ribosomal protein S8 AAQM_0809 PF00347 Ribosomal protein L6 AAQM_0810 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AAQM_0811 PF03719 Ribosomal protein S5, C-terminal domain AAQM_0811 PF00333 Ribosomal protein S5, N-terminal domain AAQM_0812 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AAQM_0813 PF00344 SecY translocase AAQM_0814 PF00557 Metallopeptidase family M24 AAQM_0815 PF01176 Translation initiation factor 1A / IF-1 AAQM_0817 PF03167 Uracil DNA glycosylase superfamily AAQM_0819 PF00152 tRNA synthetases class II (D, K and N) AAQM_0819 PF02938 GAD domain AAQM_0819 PF01336 OB-fold nucleic acid binding domain AAQM_0822 PF04055 Radical SAM superfamily AAQM_0822 PF08497 Radical SAM N-terminal AAQM_0823 PF01810 LysE type translocator AAQM_0824 PF05191 Adenylate kinase, active site lid AAQM_0827 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_0827 PF08447 PAS fold AAQM_0827 PF13426 PAS domain AAQM_0829 PF01168 Alanine racemase, N-terminal domain AAQM_0829 PF00842 Alanine racemase, C-terminal domain AAQM_0830 PF01541 GIY-YIG catalytic domain AAQM_0830 PF08459 UvrC Helix-hairpin-helix N-terminal AAQM_0830 PF02151 UvrB/uvrC motif AAQM_0831 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0831 PF17158 Membrane-associated sensor, integral membrane domain AAQM_0833 PF04973 Nicotinamide mononucleotide transporter AAQM_0834 PF00255 Glutathione peroxidase AAQM_0835 PF08447 PAS fold AAQM_0835 PF13426 PAS domain AAQM_0835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_0836 PF00672 HAMP domain AAQM_0836 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_0836 PF02203 Tar ligand binding domain homologue AAQM_0837 PF00672 HAMP domain AAQM_0837 PF02203 Tar ligand binding domain homologue AAQM_0837 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_0838 PF01522 Polysaccharide deacetylase AAQM_0841 PF08360 QacR-like protein, C-terminal region AAQM_0841 PF00440 Bacterial regulatory proteins, tetR family AAQM_0842 PF00873 AcrB/AcrD/AcrF family AAQM_0843 PF00529 HlyD membrane-fusion protein of T1SS AAQM_0843 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AAQM_0847 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0847 PF08448 PAS fold AAQM_0848 PF03372 Endonuclease/Exonuclease/phosphatase family AAQM_0854 PF00342 Phosphoglucose isomerase AAQM_0855 PF00483 Nucleotidyl transferase AAQM_0856 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AAQM_0856 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AAQM_0856 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AAQM_0856 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AAQM_0863 PF06865 Pyrimidine/purine nucleoside phosphorylase AAQM_0867 PF01926 50S ribosome-binding GTPase AAQM_0867 PF06071 Protein of unknown function (DUF933) AAQM_0868 PF00860 Permease family AAQM_0869 PF00156 Phosphoribosyl transferase domain AAQM_0870 PF04241 Protein of unknown function (DUF423) AAQM_0873 PF00860 Permease family AAQM_0874 PF04461 Protein of unknown function (DUF520) AAQM_0876 PF00486 Transcriptional regulatory protein, C terminal AAQM_0876 PF00072 Response regulator receiver domain AAQM_0877 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0878 PF00293 NUDIX domain AAQM_0880 PF02253 Phospholipase A1 AAQM_0881 PF00834 Ribulose-phosphate 3 epimerase family AAQM_0882 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AAQM_0883 PF14480 DNA polymerase III polC-type N-terminus I AAQM_0883 PF02811 PHP domain AAQM_0883 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AAQM_0883 PF07733 Bacterial DNA polymerase III alpha NTPase domain AAQM_0883 PF14579 Helix-hairpin-helix motif AAQM_0883 PF11490 DNA polymerase III polC-type N-terminus II AAQM_0883 PF00929 Exonuclease AAQM_0884 PF02824 TGS domain AAQM_0884 PF04607 Region found in RelA / SpoT proteins AAQM_0884 PF13291 ACT domain AAQM_0886 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AAQM_0887 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AAQM_0887 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AAQM_0887 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AAQM_0889 PF05175 Methyltransferase small domain AAQM_0890 PF03692 Putative zinc- or iron-chelating domain AAQM_0892 PF00218 Indole-3-glycerol phosphate synthase AAQM_0893 PF03466 LysR substrate binding domain AAQM_0893 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AAQM_0894 PF01361 Tautomerase enzyme AAQM_0895 PF01168 Alanine racemase, N-terminal domain AAQM_0896 PF17820 PDZ domain AAQM_0896 PF02163 Peptidase family M50 AAQM_0897 PF01066 CDP-alcohol phosphatidyltransferase AAQM_0899 PF00701 Dihydrodipicolinate synthetase family AAQM_0902 PF01180 Dihydroorotate dehydrogenase AAQM_0903 PF00664 ABC transporter transmembrane region AAQM_0903 PF00005 ABC transporter AAQM_0904 PF03023 Lipid II flippase MurJ AAQM_0906 PF02915 Rubrerythrin AAQM_0908 PF01699 Sodium/calcium exchanger protein AAQM_0909 PF02130 Uncharacterized protein family UPF0054 AAQM_0911 PF18073 Rubredoxin metal binding domain AAQM_0918 PF03150 Di-haem cytochrome c peroxidase AAQM_0918 PF00034 Cytochrome c AAQM_0919 PF03707 Bacterial signalling protein N terminal repeat AAQM_0919 PF00563 EAL domain AAQM_0919 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0921 PF00448 SRP54-type protein, GTPase domain AAQM_0922 PF00578 AhpC/TSA family AAQM_0924 PF00013 KH domain AAQM_0924 PF12072 Domain of unknown function (DUF3552) AAQM_0924 PF01966 HD domain AAQM_0926 PF12911 N-terminal TM domain of oligopeptide transport permease C AAQM_0926 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_0928 PF00106 short chain dehydrogenase AAQM_0931 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AAQM_0933 PF00072 Response regulator receiver domain AAQM_0933 PF00486 Transcriptional regulatory protein, C terminal AAQM_0934 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0936 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AAQM_0936 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AAQM_0937 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0937 PF17151 Periplasmic sensor domain AAQM_0938 PF09424 Yqey-like protein AAQM_0940 PF08447 PAS fold AAQM_0940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_0941 PF00672 HAMP domain AAQM_0941 PF02203 Tar ligand binding domain homologue AAQM_0941 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_0942 PF00072 Response regulator receiver domain AAQM_0942 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0944 PF08448 PAS fold AAQM_0944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0944 PF08447 PAS fold AAQM_0945 PF00486 Transcriptional regulatory protein, C terminal AAQM_0945 PF00072 Response regulator receiver domain AAQM_0946 PF05736 OprF membrane domain AAQM_0946 PF00691 OmpA family AAQM_0947 PF00664 ABC transporter transmembrane region AAQM_0947 PF00005 ABC transporter AAQM_0947 PF03412 Peptidase C39 family AAQM_0949 PF00196 Bacterial regulatory proteins, luxR family AAQM_0949 PF17874 MalT-like TPR region AAQM_0954 PF01966 HD domain AAQM_0955 PF16916 Dimerisation domain of Zinc Transporter AAQM_0955 PF01545 Cation efflux family AAQM_0956 PF00155 Aminotransferase class I and II AAQM_0959 PF00890 FAD binding domain AAQM_0959 PF02910 Fumarate reductase flavoprotein C-term AAQM_0960 PF00117 Glutamine amidotransferase class-I AAQM_0960 PF00958 GMP synthase C terminal domain AAQM_0960 PF02540 NAD synthase AAQM_0962 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AAQM_0963 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AAQM_0965 PF00180 Isocitrate/isopropylmalate dehydrogenase AAQM_0966 PF00106 short chain dehydrogenase AAQM_0967 PF00158 Sigma-54 interaction domain AAQM_0967 PF02954 Bacterial regulatory protein, Fis family AAQM_0967 PF00072 Response regulator receiver domain AAQM_0968 PF07568 Histidine kinase AAQM_0968 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0968 PF12282 Signal transduction histidine kinase AAQM_0970 PF02332 Methane/Phenol/Toluene Hydroxylase AAQM_0971 PF02406 MmoB/DmpM family AAQM_0972 PF04945 YHS domain AAQM_0972 PF02332 Methane/Phenol/Toluene Hydroxylase AAQM_0974 PF00970 Oxidoreductase FAD-binding domain AAQM_0974 PF00175 Oxidoreductase NAD-binding domain AAQM_0974 PF00111 2Fe-2S iron-sulfur cluster binding domain AAQM_0975 PF01925 Sulfite exporter TauE/SafE AAQM_0976 PF00111 2Fe-2S iron-sulfur cluster binding domain AAQM_0976 PF00175 Oxidoreductase NAD-binding domain AAQM_0976 PF00970 Oxidoreductase FAD-binding domain AAQM_0977 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AAQM_0978 PF03928 Haem-degrading AAQM_0979 PF00171 Aldehyde dehydrogenase family AAQM_0981 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AAQM_0981 PF01118 Semialdehyde dehydrogenase, NAD binding domain AAQM_0984 PF01361 Tautomerase enzyme AAQM_0985 PF00296 Luciferase-like monooxygenase AAQM_0986 PF00561 alpha/beta hydrolase fold AAQM_0987 PF02558 Ketopantoate reductase PanE/ApbA AAQM_0987 PF08546 Ketopantoate reductase PanE/ApbA C terminal AAQM_0990 PF01817 Chorismate mutase type II AAQM_0990 PF00800 Prephenate dehydratase AAQM_0990 PF01842 ACT domain AAQM_0991 PF02702 Osmosensitive K+ channel His kinase sensor domain AAQM_0991 PF13493 Domain of unknown function (DUF4118) AAQM_0991 PF00512 His Kinase A (phospho-acceptor) domain AAQM_0991 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_0992 PF00486 Transcriptional regulatory protein, C terminal AAQM_0992 PF00072 Response regulator receiver domain AAQM_0993 PF00563 EAL domain AAQM_0993 PF03707 Bacterial signalling protein N terminal repeat AAQM_0993 PF00990 Diguanylate cyclase, GGDEF domain AAQM_0998 PF10415 Fumarase C C-terminus AAQM_0998 PF00206 Lyase AAQM_1000 PF01545 Cation efflux family AAQM_1003 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AAQM_1005 PF05099 Tellurite resistance protein TerB AAQM_1005 PF00226 DnaJ domain AAQM_1007 PF04408 Helicase associated domain (HA2) AAQM_1007 PF00270 DEAD/DEAH box helicase AAQM_1007 PF08482 ATP-dependent helicase C-terminal AAQM_1007 PF00271 Helicase conserved C-terminal domain AAQM_1010 PF01966 HD domain AAQM_1010 PF13286 Phosphohydrolase-associated domain AAQM_1014 PF01042 Endoribonuclease L-PSP AAQM_1019 PF00561 alpha/beta hydrolase fold AAQM_1020 PF17746 SfsA N-terminal OB domain AAQM_1020 PF03749 Sugar fermentation stimulation protein RE domain AAQM_1023 PF03062 MBOAT, membrane-bound O-acyltransferase family AAQM_1024 PF00849 RNA pseudouridylate synthase AAQM_1025 PF03449 Transcription elongation factor, N-terminal AAQM_1025 PF01272 Transcription elongation factor, GreA/GreB, C-term AAQM_1026 PF17785 PUA-like domain AAQM_1026 PF10672 S-adenosylmethionine-dependent methyltransferase AAQM_1027 PF07690 Major Facilitator Superfamily AAQM_1031 PF00106 short chain dehydrogenase AAQM_1032 PF02540 NAD synthase AAQM_1032 PF00958 GMP synthase C terminal domain AAQM_1032 PF00117 Glutamine amidotransferase class-I AAQM_1041 PF03793 PASTA domain AAQM_1041 PF00069 Protein kinase domain AAQM_1042 PF07669 Eco57I restriction-modification methylase AAQM_1044 PF00571 CBS domain AAQM_1044 PF03471 Transporter associated domain AAQM_1044 PF01595 Cyclin M transmembrane N-terminal domain AAQM_1045 PF01471 Putative peptidoglycan binding domain AAQM_1045 PF03734 L,D-transpeptidase catalytic domain AAQM_1046 PF01594 AI-2E family transporter AAQM_1049 PF03471 Transporter associated domain AAQM_1049 PF01595 Cyclin M transmembrane N-terminal domain AAQM_1049 PF00571 CBS domain AAQM_1052 PF17755 UvrA DNA-binding domain AAQM_1052 PF17760 UvrA interaction domain AAQM_1054 PF17932 Tetracyclin repressor-like, C-terminal domain AAQM_1054 PF00440 Bacterial regulatory proteins, tetR family AAQM_1057 PF00270 DEAD/DEAH box helicase AAQM_1057 PF00271 Helicase conserved C-terminal domain AAQM_1059 PF06426 Serine acetyltransferase, N-terminal AAQM_1059 PF00132 Bacterial transferase hexapeptide (six repeats) AAQM_1060 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AAQM_1060 PF17810 Arginine decarboxylase helical bundle domain AAQM_1060 PF17944 Arginine decarboxylase C-terminal helical extension AAQM_1061 PF13393 Histidyl-tRNA synthetase AAQM_1061 PF03129 Anticodon binding domain AAQM_1062 PF02223 Thymidylate kinase AAQM_1063 PF01467 Cytidylyltransferase-like AAQM_1064 PF02441 Flavoprotein AAQM_1066 PF03948 Ribosomal protein L9, C-terminal domain AAQM_1066 PF01281 Ribosomal protein L9, N-terminal domain AAQM_1067 PF00227 Proteasome subunit AAQM_1068 PF10431 C-terminal, D2-small domain, of ClpB protein AAQM_1068 PF07724 AAA domain (Cdc48 subfamily) AAQM_1070 PF01026 TatD related DNase AAQM_1072 PF03330 Lytic transglycolase AAQM_1072 PF05036 Sporulation related domain AAQM_1073 PF00475 Imidazoleglycerol-phosphate dehydratase AAQM_1077 PF01926 50S ribosome-binding GTPase AAQM_1078 PF00583 Acetyltransferase (GNAT) family AAQM_1079 PF00155 Aminotransferase class I and II AAQM_1079 PF00392 Bacterial regulatory proteins, gntR family AAQM_1080 PF01243 Pyridoxamine 5'-phosphate oxidase AAQM_1082 PF00873 AcrB/AcrD/AcrF family AAQM_1083 PF00873 AcrB/AcrD/AcrF family AAQM_1084 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AAQM_1084 PF00529 HlyD membrane-fusion protein of T1SS AAQM_1086 PF00813 FliP family AAQM_1087 PF05223 NTF2-like N-terminal transpeptidase domain AAQM_1087 PF03717 Penicillin-binding Protein dimerisation domain AAQM_1087 PF00905 Penicillin binding protein transpeptidase domain AAQM_1092 PF05199 GMC oxidoreductase AAQM_1092 PF00732 GMC oxidoreductase AAQM_1097 PF02491 SHS2 domain inserted in FTSA AAQM_1098 PF12327 FtsZ family, C-terminal domain AAQM_1098 PF00091 Tubulin/FtsZ family, GTPase domain AAQM_1101 PF01218 Coproporphyrinogen III oxidase AAQM_1103 PF00561 alpha/beta hydrolase fold AAQM_1104 PF02609 Exonuclease VII small subunit AAQM_1105 PF00488 MutS domain V AAQM_1105 PF01713 Smr domain AAQM_1109 PF01546 Peptidase family M20/M25/M40 AAQM_1109 PF07687 Peptidase dimerisation domain AAQM_1111 PF00005 ABC transporter AAQM_1114 PF01817 Chorismate mutase type II AAQM_1114 PF00800 Prephenate dehydratase AAQM_1119 PF01381 Helix-turn-helix AAQM_1122 PF03831 PhnA domain AAQM_1122 PF08274 PhnA Zinc-Ribbon AAQM_1129 PF01161 Phosphatidylethanolamine-binding protein AAQM_1131 PF02203 Tar ligand binding domain homologue AAQM_1131 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_1131 PF00672 HAMP domain AAQM_1132 PF08447 PAS fold AAQM_1132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1132 PF08448 PAS fold AAQM_1134 PF01584 CheW-like domain AAQM_1134 PF01627 Hpt domain AAQM_1134 PF09078 CheY binding AAQM_1134 PF02895 Signal transducing histidine kinase, homodimeric domain AAQM_1134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1135 PF00196 Bacterial regulatory proteins, luxR family AAQM_1135 PF00072 Response regulator receiver domain AAQM_1137 PF01593 Flavin containing amine oxidoreductase AAQM_1138 PF03109 ABC1 family AAQM_1140 PF11849 Domain of unknown function (DUF3369) AAQM_1142 PF08212 Lipocalin-like domain AAQM_1145 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AAQM_1148 PF00563 EAL domain AAQM_1148 PF08495 FIST N domain AAQM_1148 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1148 PF10442 FIST C domain AAQM_1152 PF01593 Flavin containing amine oxidoreductase AAQM_1153 PF08212 Lipocalin-like domain AAQM_1155 PF00106 short chain dehydrogenase AAQM_1157 PF00005 ABC transporter AAQM_1157 PF12848 ABC transporter AAQM_1158 PF03061 Thioesterase superfamily AAQM_1159 PF11849 Domain of unknown function (DUF3369) AAQM_1160 PF00672 HAMP domain AAQM_1160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_1160 PF02203 Tar ligand binding domain homologue AAQM_1161 PF08447 PAS fold AAQM_1161 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_1162 PF03120 NAD-dependent DNA ligase OB-fold domain AAQM_1162 PF00533 BRCA1 C Terminus (BRCT) domain AAQM_1162 PF12826 Helix-hairpin-helix motif AAQM_1162 PF01653 NAD-dependent DNA ligase adenylation domain AAQM_1165 PF01638 HxlR-like helix-turn-helix AAQM_1166 PF02525 Flavodoxin-like fold AAQM_1168 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AAQM_1169 PF00881 Nitroreductase family AAQM_1172 PF00512 His Kinase A (phospho-acceptor) domain AAQM_1172 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1172 PF00989 PAS fold AAQM_1172 PF08447 PAS fold AAQM_1174 PF00216 Bacterial DNA-binding protein AAQM_1176 PF01795 MraW methylase family AAQM_1178 PF00873 AcrB/AcrD/AcrF family AAQM_1182 PF13193 AMP-binding enzyme C-terminal domain AAQM_1182 PF00501 AMP-binding enzyme AAQM_1183 PF13941 MutL protein AAQM_1184 PF06368 Methylaspartate mutase E chain (MutE) AAQM_1185 PF02310 B12 binding domain AAQM_1187 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AAQM_1187 PF00056 lactate/malate dehydrogenase, NAD binding domain AAQM_1188 PF03971 Monomeric isocitrate dehydrogenase AAQM_1191 PF02687 FtsX-like permease family AAQM_1191 PF12704 MacB-like periplasmic core domain AAQM_1192 PF02810 SEC-C motif AAQM_1192 PF07517 SecA DEAD-like domain AAQM_1192 PF07516 SecA Wing and Scaffold domain AAQM_1192 PF01043 SecA preprotein cross-linking domain AAQM_1192 PF00271 Helicase conserved C-terminal domain AAQM_1193 PF03548 Outer membrane lipoprotein carrier protein LolA AAQM_1195 PF01966 HD domain AAQM_1196 PF13407 Periplasmic binding protein domain AAQM_1197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1197 PF00512 His Kinase A (phospho-acceptor) domain AAQM_1197 PF00497 Bacterial extracellular solute-binding proteins, family 3 AAQM_1198 PF03738 Glutathionylspermidine synthase preATP-grasp AAQM_1200 PF01022 Bacterial regulatory protein, arsR family AAQM_1201 PF02040 Arsenical pump membrane protein AAQM_1203 PF02417 Chromate transporter AAQM_1206 PF02203 Tar ligand binding domain homologue AAQM_1206 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_1206 PF00672 HAMP domain AAQM_1208 PF03061 Thioesterase superfamily AAQM_1210 PF16491 CAAX prenyl protease N-terminal, five membrane helices AAQM_1210 PF01435 Peptidase family M48 AAQM_1211 PF02646 RmuC family AAQM_1214 PF00994 Probable molybdopterin binding domain AAQM_1214 PF03454 MoeA C-terminal region (domain IV) AAQM_1214 PF03453 MoeA N-terminal region (domain I and II) AAQM_1216 PF01171 PP-loop family AAQM_1218 PF00085 Thioredoxin AAQM_1221 PF00563 EAL domain AAQM_1221 PF00360 Phytochrome region AAQM_1221 PF01590 GAF domain AAQM_1221 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1223 PF02541 Ppx/GppA phosphatase family AAQM_1225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AAQM_1225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AAQM_1225 PF00205 Thiamine pyrophosphate enzyme, central domain AAQM_1226 PF10369 Small subunit of acetolactate synthase AAQM_1227 PF00132 Bacterial transferase hexapeptide (six repeats) AAQM_1227 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AAQM_1228 PF17854 FtsK alpha domain AAQM_1228 PF01580 FtsK/SpoIIIE family AAQM_1228 PF09397 Ftsk gamma domain AAQM_1229 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AAQM_1229 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AAQM_1230 PF01926 50S ribosome-binding GTPase AAQM_1230 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AAQM_1231 PF01740 STAS domain AAQM_1231 PF00916 Sulfate permease family AAQM_1233 PF02843 Phosphoribosylglycinamide synthetase, C domain AAQM_1233 PF02844 Phosphoribosylglycinamide synthetase, N domain AAQM_1233 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AAQM_1235 PF03968 OstA-like protein AAQM_1235 PF04453 LPS transport system D AAQM_1237 PF00013 KH domain AAQM_1237 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AAQM_1237 PF03725 3' exoribonuclease family, domain 2 AAQM_1237 PF01138 3' exoribonuclease family, domain 1 AAQM_1237 PF00575 S1 RNA binding domain AAQM_1238 PF00072 Response regulator receiver domain AAQM_1239 PF01627 Hpt domain AAQM_1239 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1239 PF02895 Signal transducing histidine kinase, homodimeric domain AAQM_1239 PF09078 CheY binding AAQM_1239 PF01584 CheW-like domain AAQM_1240 PF01739 CheR methyltransferase, SAM binding domain AAQM_1240 PF03705 CheR methyltransferase, all-alpha domain AAQM_1241 PF03975 CheD chemotactic sensory transduction AAQM_1242 PF00072 Response regulator receiver domain AAQM_1242 PF01339 CheB methylesterase AAQM_1246 PF18644 Phage integrase SAM-like domain AAQM_1246 PF00589 Phage integrase family AAQM_1256 PF16124 RecQ zinc-binding AAQM_1256 PF00570 HRDC domain AAQM_1256 PF00271 Helicase conserved C-terminal domain AAQM_1256 PF00270 DEAD/DEAH box helicase AAQM_1256 PF09382 RQC domain AAQM_1257 PF18644 Phage integrase SAM-like domain AAQM_1257 PF00589 Phage integrase family AAQM_1258 PF00005 ABC transporter AAQM_1258 PF08402 TOBE domain AAQM_1259 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_1262 PF03459 TOBE domain AAQM_1262 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AAQM_1266 PF01432 Peptidase family M3 AAQM_1267 PF05175 Methyltransferase small domain AAQM_1267 PF17827 PrmC N-terminal domain AAQM_1268 PF06969 HemN C-terminal domain AAQM_1268 PF04055 Radical SAM superfamily AAQM_1269 PF00293 NUDIX domain AAQM_1270 PF13840 ACT domain AAQM_1270 PF01842 ACT domain AAQM_1270 PF00696 Amino acid kinase family AAQM_1273 PF00809 Pterin binding enzyme AAQM_1274 PF02153 Prephenate dehydrogenase AAQM_1274 PF01842 ACT domain AAQM_1275 PF07244 Surface antigen variable number repeat AAQM_1275 PF01103 Surface antigen AAQM_1276 PF04055 Radical SAM superfamily AAQM_1277 PF05193 Peptidase M16 inactive domain AAQM_1278 PF00749 tRNA synthetases class I (E and Q), catalytic domain AAQM_1279 PF02325 YGGT family AAQM_1284 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AAQM_1286 PF00133 tRNA synthetases class I (I, L, M and V) AAQM_1286 PF09334 tRNA synthetases class I (M) AAQM_1286 PF01588 Putative tRNA binding domain AAQM_1290 PF00682 HMGL-like AAQM_1290 PF08502 LeuA allosteric (dimerisation) domain AAQM_1291 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AAQM_1292 PF01293 Phosphoenolpyruvate carboxykinase AAQM_1294 PF00925 GTP cyclohydrolase II AAQM_1294 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AAQM_1319 PF00588 SpoU rRNA Methylase family AAQM_1320 PF00551 Formyl transferase AAQM_1320 PF01842 ACT domain AAQM_1321 PF01515 Phosphate acetyl/butaryl transferase AAQM_1321 PF03949 Malic enzyme, NAD binding domain AAQM_1321 PF00390 Malic enzyme, N-terminal domain AAQM_1323 PF01209 ubiE/COQ5 methyltransferase family AAQM_1324 PF08501 Shikimate dehydrogenase substrate binding domain AAQM_1330 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AAQM_1330 PF12008 Type I restriction and modification enzyme - subunit R C terminal AAQM_1330 PF18766 SWI2/SNF2 ATPase AAQM_1336 PF12161 HsdM N-terminal domain AAQM_1336 PF02384 N-6 DNA Methylase AAQM_1337 PF00589 Phage integrase family AAQM_1337 PF14659 Phage integrase, N-terminal SAM-like domain AAQM_1340 PF00248 Aldo/keto reductase family AAQM_1345 PF01032 FecCD transport family AAQM_1346 PF00005 ABC transporter AAQM_1348 PF00593 TonB dependent receptor AAQM_1348 PF07715 TonB-dependent Receptor Plug Domain AAQM_1353 PF13419 Haloacid dehalogenase-like hydrolase AAQM_1355 PF01479 S4 domain AAQM_1355 PF00849 RNA pseudouridylate synthase AAQM_1356 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AAQM_1357 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1357 PF17158 Membrane-associated sensor, integral membrane domain AAQM_1360 PF05971 RNA methyltransferase AAQM_1361 PF03737 Aldolase/RraA AAQM_1365 PF01381 Helix-turn-helix AAQM_1368 PF13476 AAA domain AAQM_1371 PF02472 Biopolymer transport protein ExbD/TolR AAQM_1372 PF01618 MotA/TolQ/ExbB proton channel family AAQM_1374 PF00593 TonB dependent receptor AAQM_1374 PF07715 TonB-dependent Receptor Plug Domain AAQM_1380 PF16200 C-terminal region of band_7 AAQM_1380 PF01145 SPFH domain / Band 7 family AAQM_1382 PF00072 Response regulator receiver domain AAQM_1382 PF00486 Transcriptional regulatory protein, C terminal AAQM_1385 PF02092 Glycyl-tRNA synthetase beta subunit AAQM_1389 PF02527 rRNA small subunit methyltransferase G AAQM_1390 PF00925 GTP cyclohydrolase II AAQM_1391 PF00490 Delta-aminolevulinic acid dehydratase AAQM_1392 PF08447 PAS fold AAQM_1392 PF08448 PAS fold AAQM_1392 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1393 PF00486 Transcriptional regulatory protein, C terminal AAQM_1393 PF00072 Response regulator receiver domain AAQM_1396 PF03477 ATP cone domain AAQM_1396 PF02867 Ribonucleotide reductase, barrel domain AAQM_1396 PF00317 Ribonucleotide reductase, all-alpha domain AAQM_1397 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AAQM_1397 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AAQM_1398 PF06969 HemN C-terminal domain AAQM_1398 PF04055 Radical SAM superfamily AAQM_1400 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AAQM_1401 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AAQM_1402 PF02540 NAD synthase AAQM_1406 PF05099 Tellurite resistance protein TerB AAQM_1406 PF00226 DnaJ domain AAQM_1408 PF00902 Sec-independent protein translocase protein (TatC) AAQM_1409 PF02547 Queuosine biosynthesis protein AAQM_1415 PF02086 D12 class N6 adenine-specific DNA methyltransferase AAQM_1455 PF00005 ABC transporter AAQM_1455 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AAQM_1466 PF03737 Aldolase/RraA AAQM_1468 PF02754 Cysteine-rich domain AAQM_1468 PF13183 4Fe-4S dicluster domain AAQM_1468 PF02665 Nitrate reductase gamma subunit AAQM_1469 PF01790 Prolipoprotein diacylglyceryl transferase AAQM_1473 PF01367 5'-3' exonuclease, C-terminal SAM fold AAQM_1473 PF00476 DNA polymerase family A AAQM_1473 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AAQM_1474 PF02348 Cytidylyltransferase AAQM_1475 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1475 PF10442 FIST C domain AAQM_1475 PF08495 FIST N domain AAQM_1475 PF00563 EAL domain AAQM_1476 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1476 PF08448 PAS fold AAQM_1477 PF12399 Branched-chain amino acid ATP-binding cassette transporter AAQM_1477 PF00005 ABC transporter AAQM_1478 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAQM_1479 PF02885 Glycosyl transferase family, helical bundle domain AAQM_1479 PF00591 Glycosyl transferase family, a/b domain AAQM_1481 PF00593 TonB dependent receptor AAQM_1481 PF07715 TonB-dependent Receptor Plug Domain AAQM_1482 PF00072 Response regulator receiver domain AAQM_1482 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1483 PF00764 Arginosuccinate synthase AAQM_1484 PF00132 Bacterial transferase hexapeptide (six repeats) AAQM_1486 PF08448 PAS fold AAQM_1486 PF08447 PAS fold AAQM_1486 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1488 PF13662 Toprim domain AAQM_1488 PF02132 RecR protein AAQM_1489 PF00684 DnaJ central domain AAQM_1489 PF01556 DnaJ C terminal domain AAQM_1489 PF00226 DnaJ domain AAQM_1490 PF00291 Pyridoxal-phosphate dependent enzyme AAQM_1494 PF00753 Metallo-beta-lactamase superfamily AAQM_1495 PF00563 EAL domain AAQM_1495 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1495 PF08447 PAS fold AAQM_1495 PF08448 PAS fold AAQM_1496 PF01590 GAF domain AAQM_1496 PF00360 Phytochrome region AAQM_1496 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1496 PF00563 EAL domain AAQM_1497 PF08003 Protein of unknown function (DUF1698) AAQM_1498 PF05140 ResB-like family AAQM_1498 PF01578 Cytochrome C assembly protein AAQM_1499 PF00486 Transcriptional regulatory protein, C terminal AAQM_1499 PF00072 Response regulator receiver domain AAQM_1500 PF08447 PAS fold AAQM_1500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1500 PF08448 PAS fold AAQM_1501 PF07687 Peptidase dimerisation domain AAQM_1501 PF01546 Peptidase family M20/M25/M40 AAQM_1503 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AAQM_1503 PF01266 FAD dependent oxidoreductase AAQM_1505 PF00072 Response regulator receiver domain AAQM_1507 PF08448 PAS fold AAQM_1507 PF08447 PAS fold AAQM_1507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1508 PF01556 DnaJ C terminal domain AAQM_1508 PF00226 DnaJ domain AAQM_1509 PF13411 MerR HTH family regulatory protein AAQM_1512 PF02142 MGS-like domain AAQM_1512 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AAQM_1512 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AAQM_1513 PF01810 LysE type translocator AAQM_1514 PF00899 ThiF family AAQM_1515 PF12792 CSS motif domain associated with EAL AAQM_1515 PF00563 EAL domain AAQM_1516 PF01522 Polysaccharide deacetylase AAQM_1517 PF00939 Sodium:sulfate symporter transmembrane region AAQM_1518 PF00994 Probable molybdopterin binding domain AAQM_1520 PF01434 Peptidase family M41 AAQM_1520 PF17862 AAA+ lid domain AAQM_1520 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_1521 PF04055 Radical SAM superfamily AAQM_1521 PF00919 Uncharacterized protein family UPF0004 AAQM_1523 PF01761 3-dehydroquinate synthase AAQM_1525 PF00762 Ferrochelatase AAQM_1527 PF04397 LytTr DNA-binding domain AAQM_1527 PF00072 Response regulator receiver domain AAQM_1528 PF07694 5TMR of 5TMR-LYT AAQM_1528 PF06580 Histidine kinase AAQM_1528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1534 PF07196 Flagellin hook IN motif AAQM_1534 PF00669 Bacterial flagellin N-terminal helical region AAQM_1534 PF00669 Bacterial flagellin N-terminal helical region AAQM_1534 PF07196 Flagellin hook IN motif AAQM_1534 PF00700 Bacterial flagellin C-terminal helical region AAQM_1534 PF00700 Bacterial flagellin C-terminal helical region AAQM_1537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1538 PF00072 Response regulator receiver domain AAQM_1538 PF00486 Transcriptional regulatory protein, C terminal AAQM_1542 PF00664 ABC transporter transmembrane region AAQM_1542 PF00005 ABC transporter AAQM_1543 PF01594 AI-2E family transporter AAQM_1545 PF03707 Bacterial signalling protein N terminal repeat AAQM_1545 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1545 PF00563 EAL domain AAQM_1546 PF00085 Thioredoxin AAQM_1547 PF00578 AhpC/TSA family AAQM_1547 PF10417 C-terminal domain of 1-Cys peroxiredoxin AAQM_1549 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AAQM_1549 PF00072 Response regulator receiver domain AAQM_1549 PF00672 HAMP domain AAQM_1549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1549 PF00512 His Kinase A (phospho-acceptor) domain AAQM_1549 PF01627 Hpt domain AAQM_1551 PF00933 Glycosyl hydrolase family 3 N terminal domain AAQM_1551 PF01915 Glycosyl hydrolase family 3 C-terminal domain AAQM_1555 PF02652 L-lactate permease AAQM_1556 PF01556 DnaJ C terminal domain AAQM_1556 PF00226 DnaJ domain AAQM_1556 PF00684 DnaJ central domain AAQM_1562 PF00072 Response regulator receiver domain AAQM_1562 PF00486 Transcriptional regulatory protein, C terminal AAQM_1565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AAQM_1566 PF00478 IMP dehydrogenase / GMP reductase domain AAQM_1566 PF00571 CBS domain AAQM_1567 PF01425 Amidase AAQM_1568 PF01196 Ribosomal protein L17 AAQM_1569 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AAQM_1569 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AAQM_1569 PF01000 RNA polymerase Rpb3/RpoA insert domain AAQM_1570 PF01479 S4 domain AAQM_1570 PF00163 Ribosomal protein S4/S9 N-terminal domain AAQM_1571 PF00411 Ribosomal protein S11 AAQM_1572 PF00416 Ribosomal protein S13/S18 AAQM_1573 PF00444 Ribosomal protein L36 AAQM_1576 PF00180 Isocitrate/isopropylmalate dehydrogenase AAQM_1577 PF00694 Aconitase C-terminal domain AAQM_1578 PF04539 Sigma-70 region 3 AAQM_1578 PF04542 Sigma-70 region 2 AAQM_1578 PF04545 Sigma-70, region 4 AAQM_1578 PF00140 Sigma-70 factor, region 1.2 AAQM_1582 PF06865 Pyrimidine/purine nucleoside phosphorylase AAQM_1583 PF00202 Aminotransferase class-III AAQM_1587 PF01098 Cell cycle protein AAQM_1588 PF00849 RNA pseudouridylate synthase AAQM_1588 PF01479 S4 domain AAQM_1589 PF02903 Alpha amylase, N-terminal ig-like domain AAQM_1589 PF00128 Alpha amylase, catalytic domain AAQM_1590 PF02390 Putative methyltransferase AAQM_1591 PF00005 ABC transporter AAQM_1594 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AAQM_1596 PF00005 ABC transporter AAQM_1596 PF16326 ABC transporter C-terminal domain AAQM_1596 PF12848 ABC transporter AAQM_1602 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AAQM_1602 PF14602 Hexapeptide repeat of succinyl-transferase AAQM_1603 PF00271 Helicase conserved C-terminal domain AAQM_1603 PF18074 Primosomal protein N C-terminal domain AAQM_1603 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AAQM_1603 PF00270 DEAD/DEAH box helicase AAQM_1608 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAQM_1609 PF00586 AIR synthase related protein, N-terminal domain AAQM_1609 PF02769 AIR synthase related protein, C-terminal domain AAQM_1611 PF07728 AAA domain (dynein-related subfamily) AAQM_1611 PF12102 Domain of unknown function (DUF3578) AAQM_1613 PF01924 Hydrogenase formation hypA family AAQM_1614 PF01455 HupF/HypC family AAQM_1615 PF02492 CobW/HypB/UreG, nucleotide-binding domain AAQM_1616 PF00005 ABC transporter AAQM_1619 PF01891 Cobalt uptake substrate-specific transmembrane region AAQM_1621 PF02203 Tar ligand binding domain homologue AAQM_1621 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_1621 PF00672 HAMP domain AAQM_1626 PF12823 Domain of unknown function (DUF3817) AAQM_1628 PF02568 Thiamine biosynthesis protein (ThiI) AAQM_1628 PF02926 THUMP domain AAQM_1631 PF00999 Sodium/hydrogen exchanger family AAQM_1631 PF02080 TrkA-C domain AAQM_1631 PF03471 Transporter associated domain AAQM_1633 PF07556 Protein of unknown function (DUF1538) AAQM_1634 PF00571 CBS domain AAQM_1638 PF17788 HypF Kae1-like domain AAQM_1638 PF01300 Telomere recombination AAQM_1638 PF07503 HypF finger AAQM_1638 PF00708 Acylphosphatase AAQM_1640 PF01750 Hydrogenase maturation protease AAQM_1641 PF01292 Prokaryotic cytochrome b561 AAQM_1642 PF00374 Nickel-dependent hydrogenase AAQM_1643 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AAQM_1643 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AAQM_1643 PF10518 TAT (twin-arginine translocation) pathway signal sequence AAQM_1644 PF00374 Nickel-dependent hydrogenase AAQM_1645 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AAQM_1645 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AAQM_1647 PF06434 Aconitate hydratase 2 N-terminus AAQM_1647 PF00330 Aconitase family (aconitate hydratase) AAQM_1647 PF11791 Aconitate B N-terminal domain AAQM_1648 PF01590 GAF domain AAQM_1648 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1648 PF00360 Phytochrome region AAQM_1648 PF00563 EAL domain AAQM_1650 PF00501 AMP-binding enzyme AAQM_1651 PF02803 Thiolase, C-terminal domain AAQM_1651 PF00108 Thiolase, N-terminal domain AAQM_1652 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AAQM_1652 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AAQM_1652 PF00378 Enoyl-CoA hydratase/isomerase AAQM_1653 PF09317 Domain of unknown function (DUF1974) AAQM_1653 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AAQM_1653 PF02770 Acyl-CoA dehydrogenase, middle domain AAQM_1653 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AAQM_1656 PF00563 EAL domain AAQM_1656 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1656 PF03707 Bacterial signalling protein N terminal repeat AAQM_1660 PF01709 Transcriptional regulator AAQM_1661 PF01551 Peptidase family M23 AAQM_1662 PF04333 MlaA lipoprotein AAQM_1665 PF03641 Possible lysine decarboxylase AAQM_1666 PF13419 Haloacid dehalogenase-like hydrolase AAQM_1671 PF02600 Disulfide bond formation protein DsbB AAQM_1675 PF02028 BCCT, betaine/carnitine/choline family transporter AAQM_1676 PF07690 Major Facilitator Superfamily AAQM_1680 PF00464 Serine hydroxymethyltransferase AAQM_1681 PF02805 Metal binding domain of Ada AAQM_1681 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AAQM_1681 PF12833 Helix-turn-helix domain AAQM_1681 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AAQM_1684 PF00464 Serine hydroxymethyltransferase AAQM_1685 PF00202 Aminotransferase class-III AAQM_1686 PF03473 MOSC domain AAQM_1688 PF01263 Aldose 1-epimerase AAQM_1689 PF00905 Penicillin binding protein transpeptidase domain AAQM_1690 PF00270 DEAD/DEAH box helicase AAQM_1690 PF00271 Helicase conserved C-terminal domain AAQM_1691 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AAQM_1691 PF18381 YcaO cyclodehydratase C-terminal domain AAQM_1695 PF00672 HAMP domain AAQM_1695 PF02203 Tar ligand binding domain homologue AAQM_1695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_1696 PF00075 RNase H AAQM_1697 PF07836 DmpG-like communication domain AAQM_1697 PF00682 HMGL-like AAQM_1699 PF11798 IMS family HHH motif AAQM_1699 PF00817 impB/mucB/samB family AAQM_1699 PF11799 impB/mucB/samB family C-terminal domain AAQM_1701 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding AAQM_1701 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_1701 PF10518 TAT (twin-arginine translocation) pathway signal sequence AAQM_1703 PF00266 Aminotransferase class-V AAQM_1705 PF02634 FdhD/NarQ family AAQM_1707 PF13247 4Fe-4S dicluster domain AAQM_1710 PF02613 Nitrate reductase delta subunit AAQM_1713 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1713 PF00512 His Kinase A (phospho-acceptor) domain AAQM_1714 PF00072 Response regulator receiver domain AAQM_1718 PF01841 Transglutaminase-like superfamily AAQM_1721 PF03841 L-seryl-tRNA selenium transferase AAQM_1722 PF09107 Elongation factor SelB, winged helix AAQM_1722 PF00009 Elongation factor Tu GTP binding domain AAQM_1722 PF03144 Elongation factor Tu domain 2 AAQM_1722 PF09105 Elongation factor SelB, winged helix AAQM_1722 PF09106 Elongation factor SelB, winged helix AAQM_1723 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1723 PF08448 PAS fold AAQM_1723 PF08447 PAS fold AAQM_1724 PF13361 UvrD-like helicase C-terminal domain AAQM_1724 PF00580 UvrD/REP helicase N-terminal domain AAQM_1728 PF00072 Response regulator receiver domain AAQM_1728 PF00158 Sigma-54 interaction domain AAQM_1729 PF00072 Response regulator receiver domain AAQM_1730 PF00512 His Kinase A (phospho-acceptor) domain AAQM_1730 PF01627 Hpt domain AAQM_1730 PF00072 Response regulator receiver domain AAQM_1730 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AAQM_1730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1730 PF00672 HAMP domain AAQM_1731 PF01627 Hpt domain AAQM_1731 PF00672 HAMP domain AAQM_1731 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1731 PF00512 His Kinase A (phospho-acceptor) domain AAQM_1731 PF00072 Response regulator receiver domain AAQM_1731 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AAQM_1732 PF08448 PAS fold AAQM_1732 PF08447 PAS fold AAQM_1732 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1733 PF00512 His Kinase A (phospho-acceptor) domain AAQM_1733 PF00072 Response regulator receiver domain AAQM_1733 PF09308 LuxQ, periplasmic AAQM_1739 PF01475 Ferric uptake regulator family AAQM_1749 PF12704 MacB-like periplasmic core domain AAQM_1749 PF00005 ABC transporter AAQM_1749 PF02687 FtsX-like permease family AAQM_1750 PF02687 FtsX-like permease family AAQM_1750 PF00005 ABC transporter AAQM_1750 PF12704 MacB-like periplasmic core domain AAQM_1753 PF01618 MotA/TolQ/ExbB proton channel family AAQM_1754 PF02472 Biopolymer transport protein ExbD/TolR AAQM_1756 PF02789 Cytosol aminopeptidase family, N-terminal domain AAQM_1756 PF00883 Cytosol aminopeptidase family, catalytic domain AAQM_1758 PF00291 Pyridoxal-phosphate dependent enzyme AAQM_1759 PF00156 Phosphoribosyl transferase domain AAQM_1760 PF01068 ATP dependent DNA ligase domain AAQM_1760 PF14743 DNA ligase OB-like domain AAQM_1761 PF07963 Prokaryotic N-terminal methylation motif AAQM_1761 PF08334 Type II secretion system (T2SS), protein G AAQM_1762 PF00772 DnaB-like helicase N terminal domain AAQM_1762 PF03796 DnaB-like helicase C terminal domain AAQM_1763 PF17151 Periplasmic sensor domain AAQM_1763 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1764 PF04551 GcpE protein AAQM_1765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1765 PF08447 PAS fold AAQM_1765 PF08448 PAS fold AAQM_1767 PF00152 tRNA synthetases class II (D, K and N) AAQM_1767 PF01336 OB-fold nucleic acid binding domain AAQM_1768 PF00464 Serine hydroxymethyltransferase AAQM_1770 PF00425 chorismate binding enzyme AAQM_1770 PF04715 Anthranilate synthase component I, N terminal region AAQM_1771 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AAQM_1772 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AAQM_1774 PF00696 Amino acid kinase family AAQM_1775 PF01192 RNA polymerase Rpb6 AAQM_1776 PF02824 TGS domain AAQM_1776 PF04607 Region found in RelA / SpoT proteins AAQM_1776 PF13291 ACT domain AAQM_1777 PF00579 tRNA synthetases class I (W and Y) AAQM_1777 PF01479 S4 domain AAQM_1779 PF01520 N-acetylmuramoyl-L-alanine amidase AAQM_1782 PF01195 Peptidyl-tRNA hydrolase AAQM_1783 PF01386 Ribosomal L25p family AAQM_1783 PF14693 Ribosomal protein TL5, C-terminal domain AAQM_1784 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AAQM_1784 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AAQM_1785 PF10502 Signal peptidase, peptidase S26 AAQM_1786 PF02502 Ribose/Galactose Isomerase AAQM_1793 PF00633 Helix-hairpin-helix motif AAQM_1793 PF00730 HhH-GPD superfamily base excision DNA repair protein AAQM_1793 PF10576 Iron-sulfur binding domain of endonuclease III AAQM_1794 PF12344 Ultra-violet resistance protein B AAQM_1794 PF04851 Type III restriction enzyme, res subunit AAQM_1794 PF00271 Helicase conserved C-terminal domain AAQM_1794 PF02151 UvrB/uvrC motif AAQM_1794 PF17757 UvrB interaction domain AAQM_1797 PF02774 Semialdehyde dehydrogenase, dimerisation domain AAQM_1797 PF01118 Semialdehyde dehydrogenase, NAD binding domain AAQM_1798 PF01272 Transcription elongation factor, GreA/GreB, C-term AAQM_1798 PF03449 Transcription elongation factor, N-terminal AAQM_1799 PF00899 ThiF family AAQM_1800 PF01584 CheW-like domain AAQM_1800 PF00072 Response regulator receiver domain AAQM_1801 PF14698 Argininosuccinate lyase C-terminal AAQM_1801 PF00206 Lyase AAQM_1805 PF07694 5TMR of 5TMR-LYT AAQM_1805 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1806 PF01925 Sulfite exporter TauE/SafE AAQM_1807 PF03448 MgtE intracellular N domain AAQM_1807 PF01769 Divalent cation transporter AAQM_1807 PF00571 CBS domain AAQM_1809 PF04324 BFD-like [2Fe-2S] binding domain AAQM_1809 PF01592 NifU-like N terminal domain AAQM_1809 PF01106 NifU-like domain AAQM_1810 PF00266 Aminotransferase class-V AAQM_1811 PF01458 Uncharacterized protein family (UPF0051) AAQM_1812 PF00005 ABC transporter AAQM_1814 PF00266 Aminotransferase class-V AAQM_1815 PF02657 Fe-S metabolism associated domain AAQM_1817 PF00892 EamA-like transporter family AAQM_1818 PF00672 HAMP domain AAQM_1818 PF02203 Tar ligand binding domain homologue AAQM_1818 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_1820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AAQM_1820 PF00289 Biotin carboxylase, N-terminal domain AAQM_1820 PF02785 Biotin carboxylase C-terminal domain AAQM_1821 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1821 PF08448 PAS fold AAQM_1823 PF00893 Small Multidrug Resistance protein AAQM_1825 PF00873 AcrB/AcrD/AcrF family AAQM_1826 PF00529 HlyD membrane-fusion protein of T1SS AAQM_1826 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AAQM_1828 PF00440 Bacterial regulatory proteins, tetR family AAQM_1828 PF17932 Tetracyclin repressor-like, C-terminal domain AAQM_1829 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AAQM_1830 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1831 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_1831 PF00672 HAMP domain AAQM_1831 PF02203 Tar ligand binding domain homologue AAQM_1832 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_1832 PF08447 PAS fold AAQM_1834 PF01451 Low molecular weight phosphotyrosine protein phosphatase AAQM_1838 PF05362 Lon protease (S16) C-terminal proteolytic domain AAQM_1838 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_1838 PF02190 ATP-dependent protease La (LON) substrate-binding domain AAQM_1839 PF13525 Outer membrane lipoprotein AAQM_1840 PF03807 NADP oxidoreductase coenzyme F420-dependent AAQM_1840 PF14748 Pyrroline-5-carboxylate reductase dimerisation AAQM_1844 PF01725 Ham1 family AAQM_1845 PF07690 Major Facilitator Superfamily AAQM_1847 PF00990 Diguanylate cyclase, GGDEF domain AAQM_1848 PF01227 GTP cyclohydrolase I AAQM_1849 PF01544 CorA-like Mg2+ transporter protein AAQM_1850 PF00482 Type II secretion system (T2SS), protein F AAQM_1851 PF00437 Type II/IV secretion system protein AAQM_1854 PF01926 50S ribosome-binding GTPase AAQM_1854 PF07650 KH domain AAQM_1855 PF13335 Magnesium chelatase, subunit ChlI C-terminal AAQM_1855 PF01078 Magnesium chelatase, subunit ChlI AAQM_1857 PF01327 Polypeptide deformylase AAQM_1858 PF00574 Clp protease AAQM_1859 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AAQM_1859 PF05697 Bacterial trigger factor protein (TF) AAQM_1859 PF05698 Bacterial trigger factor protein (TF) C-terminus AAQM_1860 PF13519 von Willebrand factor type A domain AAQM_1861 PF03976 Polyphosphate kinase 2 (PPK2) AAQM_1862 PF03976 Polyphosphate kinase 2 (PPK2) AAQM_1863 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AAQM_1864 PF00301 Rubredoxin AAQM_1865 PF03435 Saccharopine dehydrogenase NADP binding domain AAQM_1865 PF16653 Saccharopine dehydrogenase C-terminal domain AAQM_1867 PF00589 Phage integrase family AAQM_1867 PF13356 Arm DNA-binding domain AAQM_1881 PF04221 RelB antitoxin AAQM_1884 PF02899 Phage integrase, N-terminal SAM-like domain AAQM_1884 PF00589 Phage integrase family AAQM_1885 PF02661 Fic/DOC family AAQM_1885 PF17841 BID domain of Bartonella effector protein (Bep) AAQM_1886 PF07152 YaeQ protein AAQM_1890 PF01053 Cys/Met metabolism PLP-dependent enzyme AAQM_1891 PF01053 Cys/Met metabolism PLP-dependent enzyme AAQM_1894 PF00072 Response regulator receiver domain AAQM_1894 PF00486 Transcriptional regulatory protein, C terminal AAQM_1896 PF03824 High-affinity nickel-transport protein AAQM_1899 PF13244 Domain of unknown function (DUF4040) AAQM_1899 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AAQM_1899 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AAQM_1899 PF00361 Proton-conducting membrane transporter AAQM_1900 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AAQM_1901 PF00361 Proton-conducting membrane transporter AAQM_1902 PF01899 Na+/H+ ion antiporter subunit AAQM_1903 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AAQM_1904 PF03334 Na+/H+ antiporter subunit AAQM_1906 PF08447 PAS fold AAQM_1906 PF08448 PAS fold AAQM_1906 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1907 PF03150 Di-haem cytochrome c peroxidase AAQM_1908 PF04116 Fatty acid hydroxylase superfamily AAQM_1913 PF00137 ATP synthase subunit C AAQM_1915 PF00924 Mechanosensitive ion channel AAQM_1921 PF00171 Aldehyde dehydrogenase family AAQM_1924 PF13746 4Fe-4S dicluster domain AAQM_1924 PF12801 4Fe-4S binding domain AAQM_1924 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AAQM_1925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_1925 PF00512 His Kinase A (phospho-acceptor) domain AAQM_1925 PF00989 PAS fold AAQM_1925 PF08447 PAS fold AAQM_1926 PF00072 Response regulator receiver domain AAQM_1926 PF12833 Helix-turn-helix domain AAQM_1928 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AAQM_1928 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AAQM_1928 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AAQM_1928 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AAQM_1934 PF00258 Flavodoxin AAQM_1935 PF01475 Ferric uptake regulator family AAQM_1937 PF02421 Ferrous iron transport protein B AAQM_1937 PF07664 Ferrous iron transport protein B C terminus AAQM_1937 PF07670 Nucleoside recognition AAQM_1940 PF04376 Arginine-tRNA-protein transferase, N terminus AAQM_1940 PF04377 Arginine-tRNA-protein transferase, C terminus AAQM_1941 PF00290 Tryptophan synthase alpha chain AAQM_1942 PF02548 Ketopantoate hydroxymethyltransferase AAQM_1943 PF05491 RuvB C-terminal winged helix domain AAQM_1943 PF17864 RuvB AAA lid domain AAQM_1943 PF05496 Holliday junction DNA helicase RuvB P-loop domain AAQM_1944 PF01594 AI-2E family transporter AAQM_1946 PF09905 DNA-binding protein VF530 AAQM_1955 PF04055 Radical SAM superfamily AAQM_1956 PF01208 Uroporphyrinogen decarboxylase (URO-D) AAQM_1958 PF01118 Semialdehyde dehydrogenase, NAD binding domain AAQM_1958 PF02774 Semialdehyde dehydrogenase, dimerisation domain AAQM_1959 PF00521 DNA gyrase/topoisomerase IV, subunit A AAQM_1959 PF03989 DNA gyrase C-terminal domain, beta-propeller AAQM_1960 PF04325 Protein of unknown function (DUF465) AAQM_1961 PF01960 ArgJ family AAQM_1963 PF00830 Ribosomal L28 family AAQM_1966 PF01370 NAD dependent epimerase/dehydratase family AAQM_1967 PF00294 pfkB family carbohydrate kinase AAQM_1967 PF01467 Cytidylyltransferase-like AAQM_1968 PF13580 SIS domain AAQM_1969 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AAQM_1972 PF00535 Glycosyl transferase family 2 AAQM_1975 PF13439 Glycosyltransferase Family 4 AAQM_1975 PF00534 Glycosyl transferases group 1 AAQM_1978 PF03062 MBOAT, membrane-bound O-acyltransferase family AAQM_1980 PF03062 MBOAT, membrane-bound O-acyltransferase family AAQM_1982 PF00535 Glycosyl transferase family 2 AAQM_1984 PF00535 Glycosyl transferase family 2 AAQM_1985 PF16363 GDP-mannose 4,6 dehydratase AAQM_1986 PF04321 RmlD substrate binding domain AAQM_1987 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AAQM_1988 PF00483 Nucleotidyl transferase AAQM_1992 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AAQM_1993 PF02541 Ppx/GppA phosphatase family AAQM_1994 PF00037 4Fe-4S binding domain AAQM_1996 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AAQM_1996 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_1997 PF01493 GXGXG motif AAQM_1997 PF01645 Conserved region in glutamate synthase AAQM_1997 PF00310 Glutamine amidotransferases class-II AAQM_1997 PF04898 Glutamate synthase central domain AAQM_1998 PF03009 Glycerophosphoryl diester phosphodiesterase family AAQM_2004 PF08447 PAS fold AAQM_2004 PF08448 PAS fold AAQM_2004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_2011 PF02719 Polysaccharide biosynthesis protein AAQM_2012 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AAQM_2013 PF00953 Glycosyl transferase family 4 AAQM_2016 PF01370 NAD dependent epimerase/dehydratase family AAQM_2017 PF00534 Glycosyl transferases group 1 AAQM_2017 PF13439 Glycosyltransferase Family 4 AAQM_2018 PF16363 GDP-mannose 4,6 dehydratase AAQM_2024 PF00535 Glycosyl transferase family 2 AAQM_2026 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AAQM_2028 PF01370 NAD dependent epimerase/dehydratase family AAQM_2029 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AAQM_2029 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AAQM_2029 PF00205 Thiamine pyrophosphate enzyme, central domain AAQM_2030 PF16363 GDP-mannose 4,6 dehydratase AAQM_2031 PF00483 Nucleotidyl transferase AAQM_2032 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AAQM_2033 PF00132 Bacterial transferase hexapeptide (six repeats) AAQM_2034 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AAQM_2034 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AAQM_2035 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AAQM_2035 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AAQM_2035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AAQM_2036 PF00885 6,7-dimethyl-8-ribityllumazine synthase AAQM_2037 PF01029 NusB family AAQM_2038 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AAQM_2041 PF00793 DAHP synthetase I family AAQM_2046 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AAQM_2049 PF03958 Bacterial type II/III secretion system short domain AAQM_2049 PF00263 Bacterial type II and III secretion system protein AAQM_2050 PF01205 Uncharacterized protein family UPF0029 AAQM_2050 PF09186 Domain of unknown function (DUF1949) AAQM_2051 PF01728 FtsJ-like methyltransferase AAQM_2051 PF01479 S4 domain AAQM_2052 PF06574 FAD synthetase AAQM_2052 PF01687 Riboflavin kinase AAQM_2053 PF13649 Methyltransferase domain AAQM_2054 PF00578 AhpC/TSA family AAQM_2056 PF02913 FAD linked oxidases, C-terminal domain AAQM_2056 PF01565 FAD binding domain AAQM_2057 PF03631 Virulence factor BrkB AAQM_2058 PF01695 IstB-like ATP binding protein AAQM_2067 PF10431 C-terminal, D2-small domain, of ClpB protein AAQM_2067 PF02861 Clp amino terminal domain, pathogenicity island component AAQM_2067 PF17871 AAA lid domain AAQM_2067 PF07724 AAA domain (Cdc48 subfamily) AAQM_2067 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_2068 PF02617 ATP-dependent Clp protease adaptor protein ClpS AAQM_2071 PF00501 AMP-binding enzyme AAQM_2071 PF13193 AMP-binding enzyme C-terminal domain AAQM_2072 PF01575 MaoC like domain AAQM_2076 PF00672 HAMP domain AAQM_2076 PF02203 Tar ligand binding domain homologue AAQM_2076 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_2077 PF01741 Large-conductance mechanosensitive channel, MscL AAQM_2078 PF01613 Flavin reductase like domain AAQM_2084 PF00771 FHIPEP family AAQM_2085 PF00700 Bacterial flagellin C-terminal helical region AAQM_2085 PF00669 Bacterial flagellin N-terminal helical region AAQM_2086 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AAQM_2086 PF18269 T3SS EscN ATPase C-terminal domain AAQM_2088 PF01312 FlhB HrpN YscU SpaS Family AAQM_2091 PF00460 Flagella basal body rod protein AAQM_2091 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_2092 PF02049 Flagellar hook-basal body complex protein FliE AAQM_2094 PF10609 NUBPL iron-transfer P-loop NTPase AAQM_2095 PF00448 SRP54-type protein, GTPase domain AAQM_2100 PF01618 MotA/TolQ/ExbB proton channel family AAQM_2101 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AAQM_2105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_2105 PF07196 Flagellin hook IN motif AAQM_2105 PF00460 Flagella basal body rod protein AAQM_2105 PF07559 Flagellar basal body protein FlaE AAQM_2106 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_2106 PF00460 Flagella basal body rod protein AAQM_2108 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AAQM_2110 PF14841 FliG middle domain AAQM_2110 PF14842 FliG N-terminal domain AAQM_2110 PF01706 FliG C-terminal domain AAQM_2111 PF01514 Secretory protein of YscJ/FliF family AAQM_2111 PF08345 Flagellar M-ring protein C-terminal AAQM_2112 PF00460 Flagella basal body rod protein AAQM_2113 PF00460 Flagella basal body rod protein AAQM_2113 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_2115 PF00072 Response regulator receiver domain AAQM_2116 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_2116 PF00460 Flagella basal body rod protein AAQM_2119 PF01782 RimM N-terminal domain AAQM_2121 PF00886 Ribosomal protein S16 AAQM_2122 PF02978 Signal peptide binding domain AAQM_2122 PF02881 SRP54-type protein, helical bundle domain AAQM_2122 PF00448 SRP54-type protein, GTPase domain AAQM_2123 PF00849 RNA pseudouridylate synthase AAQM_2124 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AAQM_2126 PF01784 NIF3 (NGG1p interacting factor 3) AAQM_2127 PF02091 Glycyl-tRNA synthetase alpha subunit AAQM_2129 PF00731 AIR carboxylase AAQM_2132 PF17200 Single Cache domain 2 AAQM_2132 PF00672 HAMP domain AAQM_2132 PF00672 HAMP domain AAQM_2132 PF17200 Single Cache domain 2 AAQM_2132 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_2132 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_2133 PF13476 AAA domain AAQM_2134 PF01513 ATP-NAD kinase AAQM_2135 PF00679 Elongation factor G C-terminus AAQM_2135 PF14492 Elongation Factor G, domain II AAQM_2135 PF03144 Elongation factor Tu domain 2 AAQM_2135 PF00009 Elongation factor Tu GTP binding domain AAQM_2135 PF03764 Elongation factor G, domain IV AAQM_2136 PF00177 Ribosomal protein S7p/S5e AAQM_2137 PF00164 Ribosomal protein S12/S23 AAQM_2138 PF07690 Major Facilitator Superfamily AAQM_2146 PF04998 RNA polymerase Rpb1, domain 5 AAQM_2146 PF05000 RNA polymerase Rpb1, domain 4 AAQM_2146 PF04983 RNA polymerase Rpb1, domain 3 AAQM_2146 PF04997 RNA polymerase Rpb1, domain 1 AAQM_2146 PF00623 RNA polymerase Rpb1, domain 2 AAQM_2147 PF00562 RNA polymerase Rpb2, domain 6 AAQM_2147 PF04560 RNA polymerase Rpb2, domain 7 AAQM_2147 PF04565 RNA polymerase Rpb2, domain 3 AAQM_2147 PF04561 RNA polymerase Rpb2, domain 2 AAQM_2147 PF04563 RNA polymerase beta subunit AAQM_2147 PF10385 RNA polymerase beta subunit external 1 domain AAQM_2148 PF00542 Ribosomal protein L7/L12 C-terminal domain AAQM_2148 PF16320 Ribosomal protein L7/L12 dimerisation domain AAQM_2149 PF00466 Ribosomal protein L10 AAQM_2150 PF00687 Ribosomal protein L1p/L10e family AAQM_2151 PF03946 Ribosomal protein L11, N-terminal domain AAQM_2151 PF00298 Ribosomal protein L11, RNA binding domain AAQM_2152 PF02357 Transcription termination factor nusG AAQM_2155 PF00471 Ribosomal protein L33 AAQM_2156 PF00009 Elongation factor Tu GTP binding domain AAQM_2156 PF03144 Elongation factor Tu domain 2 AAQM_2156 PF03143 Elongation factor Tu C-terminal domain AAQM_2161 PF08245 Mur ligase middle domain AAQM_2162 PF00953 Glycosyl transferase family 4 AAQM_2162 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AAQM_2163 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AAQM_2163 PF01676 Metalloenzyme superfamily AAQM_2164 PF00005 ABC transporter AAQM_2164 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AAQM_2165 PF17092 Penicillin-binding protein OB-like domain AAQM_2165 PF00912 Transglycosylase AAQM_2165 PF00905 Penicillin binding protein transpeptidase domain AAQM_2166 PF00120 Glutamine synthetase, catalytic domain AAQM_2166 PF03951 Glutamine synthetase, beta-Grasp domain AAQM_2168 PF00990 Diguanylate cyclase, GGDEF domain AAQM_2168 PF00072 Response regulator receiver domain AAQM_2169 PF02391 MoaE protein AAQM_2171 PF02621 Menaquinone biosynthesis AAQM_2173 PF03033 Glycosyltransferase family 28 N-terminal domain AAQM_2173 PF04101 Glycosyltransferase family 28 C-terminal domain AAQM_2174 PF01098 Cell cycle protein AAQM_2176 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AAQM_2184 PF00117 Glutamine amidotransferase class-I AAQM_2185 PF13416 Bacterial extracellular solute-binding protein AAQM_2187 PF00005 ABC transporter AAQM_2188 PF03707 Bacterial signalling protein N terminal repeat AAQM_2188 PF00990 Diguanylate cyclase, GGDEF domain AAQM_2188 PF00563 EAL domain AAQM_2189 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AAQM_2189 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AAQM_2193 PF16921 Tex protein YqgF-like domain AAQM_2193 PF00575 S1 RNA binding domain AAQM_2193 PF17674 HHH domain AAQM_2193 PF09371 Tex-like protein N-terminal domain AAQM_2195 PF00563 EAL domain AAQM_2195 PF00990 Diguanylate cyclase, GGDEF domain AAQM_2195 PF08448 PAS fold AAQM_2196 PF01042 Endoribonuclease L-PSP AAQM_2199 PF00155 Aminotransferase class I and II AAQM_2202 PF01245 Ribosomal protein L19 AAQM_2203 PF01746 tRNA (Guanine-1)-methyltransferase AAQM_2205 PF08267 Cobalamin-independent synthase, N-terminal domain AAQM_2205 PF01717 Cobalamin-independent synthase, Catalytic domain AAQM_2206 PF00291 Pyridoxal-phosphate dependent enzyme AAQM_2206 PF13291 ACT domain AAQM_2207 PF00119 ATP synthase A chain AAQM_2208 PF02581 Thiamine monophosphate synthase AAQM_2209 PF13361 UvrD-like helicase C-terminal domain AAQM_2209 PF00580 UvrD/REP helicase N-terminal domain AAQM_2210 PF00696 Amino acid kinase family AAQM_2211 PF00291 Pyridoxal-phosphate dependent enzyme AAQM_2212 PF00355 Rieske [2Fe-2S] domain AAQM_2213 PF00032 Cytochrome b(C-terminal)/b6/petD AAQM_2213 PF00033 Cytochrome b/b6/petB AAQM_2214 PF00034 Cytochrome c AAQM_2216 PF04452 RNA methyltransferase AAQM_2218 PF00994 Probable molybdopterin binding domain AAQM_2218 PF03454 MoeA C-terminal region (domain IV) AAQM_2218 PF03453 MoeA N-terminal region (domain I and II) AAQM_2219 PF06508 Queuosine biosynthesis protein QueC AAQM_2221 PF04055 Radical SAM superfamily AAQM_2223 PF00550 Phosphopantetheine attachment site AAQM_2224 PF00109 Beta-ketoacyl synthase, N-terminal domain AAQM_2224 PF02801 Beta-ketoacyl synthase, C-terminal domain AAQM_2225 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AAQM_2226 PF01230 HIT domain AAQM_2227 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AAQM_2227 PF01409 tRNA synthetases class II core domain (F) AAQM_2228 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AAQM_2228 PF01588 Putative tRNA binding domain AAQM_2228 PF03147 Ferredoxin-fold anticodon binding domain AAQM_2228 PF03484 tRNA synthetase B5 domain AAQM_2229 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AAQM_2230 PF02401 LytB protein AAQM_2231 PF00575 S1 RNA binding domain AAQM_2232 PF01842 ACT domain AAQM_2232 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AAQM_2232 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AAQM_2233 PF01132 Elongation factor P (EF-P) OB domain AAQM_2233 PF09285 Elongation factor P, C-terminal AAQM_2233 PF08207 Elongation factor P (EF-P) KOW-like domain AAQM_2234 PF01872 RibD C-terminal domain AAQM_2234 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AAQM_2235 PF02576 RimP N-terminal domain AAQM_2236 PF02033 Ribosome-binding factor A AAQM_2237 PF11987 Translation-initiation factor 2 AAQM_2237 PF00009 Elongation factor Tu GTP binding domain AAQM_2237 PF04760 Translation initiation factor IF-2, N-terminal region AAQM_2239 PF08544 GHMP kinases C terminal AAQM_2239 PF00288 GHMP kinases N terminal domain AAQM_2241 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AAQM_2244 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AAQM_2244 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AAQM_2245 PF02445 Quinolinate synthetase A protein AAQM_2246 PF02660 Glycerol-3-phosphate acyltransferase AAQM_2248 PF05538 Campylobacter major outer membrane protein AAQM_2250 PF03462 PCRF domain AAQM_2250 PF00472 RF-1 domain AAQM_2255 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AAQM_2255 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AAQM_2258 PF00115 Cytochrome C and Quinol oxidase polypeptide I AAQM_2259 PF01668 SmpB protein AAQM_2260 PF00288 GHMP kinases N terminal domain AAQM_2261 PF01509 TruB family pseudouridylate synthase (N terminal domain) AAQM_2262 PF00580 UvrD/REP helicase N-terminal domain AAQM_2262 PF13361 UvrD-like helicase C-terminal domain AAQM_2263 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AAQM_2263 PF03466 LysR substrate binding domain AAQM_2264 PF04055 Radical SAM superfamily AAQM_2264 PF16199 Radical_SAM C-terminal domain AAQM_2265 PF13537 Glutamine amidotransferase domain AAQM_2265 PF00156 Phosphoribosyl transferase domain AAQM_2266 PF01113 Dihydrodipicolinate reductase, N-terminus AAQM_2266 PF05173 Dihydrodipicolinate reductase, C-terminus AAQM_2267 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_2268 PF00085 Thioredoxin AAQM_2269 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AAQM_2269 PF02272 DHHA1 domain AAQM_2269 PF01411 tRNA synthetases class II (A) AAQM_2274 PF00877 NlpC/P60 family AAQM_2275 PF00877 NlpC/P60 family AAQM_2277 PF00892 EamA-like transporter family AAQM_2278 PF02545 Maf-like protein AAQM_2279 PF03150 Di-haem cytochrome c peroxidase AAQM_2279 PF00034 Cytochrome c AAQM_2280 PF02780 Transketolase, C-terminal domain AAQM_2280 PF02779 Transketolase, pyrimidine binding domain AAQM_2280 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AAQM_2281 PF00155 Aminotransferase class I and II AAQM_2282 PF01817 Chorismate mutase type II AAQM_2282 PF01842 ACT domain AAQM_2282 PF00800 Prephenate dehydratase AAQM_2283 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AAQM_2283 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AAQM_2285 PF00121 Triosephosphate isomerase AAQM_2286 PF00162 Phosphoglycerate kinase AAQM_2287 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AAQM_2287 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AAQM_2288 PF01467 Cytidylyltransferase-like AAQM_2290 PF03485 Arginyl tRNA synthetase N terminal domain AAQM_2290 PF00750 tRNA synthetases class I (R) AAQM_2290 PF05746 DALR anticodon binding domain AAQM_2291 PF02416 mttA/Hcf106 family AAQM_2292 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AAQM_2293 PF01553 Acyltransferase AAQM_2296 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AAQM_2297 PF01259 SAICAR synthetase AAQM_2298 PF13180 PDZ domain AAQM_2298 PF03572 Peptidase family S41 AAQM_2301 PF01142 tRNA pseudouridine synthase D (TruD) AAQM_2304 PF12704 MacB-like periplasmic core domain AAQM_2304 PF00005 ABC transporter AAQM_2304 PF02687 FtsX-like permease family AAQM_2318 PF00920 Dehydratase family AAQM_2319 PF13180 PDZ domain AAQM_2319 PF17820 PDZ domain AAQM_2320 PF00486 Transcriptional regulatory protein, C terminal AAQM_2320 PF00072 Response regulator receiver domain AAQM_2323 PF03186 CobD/Cbib protein AAQM_2324 PF11066 Protein of unknown function (DUF2867) AAQM_2324 PF13460 NAD(P)H-binding AAQM_2325 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AAQM_2325 PF07685 CobB/CobQ-like glutamine amidotransferase domain AAQM_2331 PF00155 Aminotransferase class I and II AAQM_2332 PF02654 Cobalamin-5-phosphate synthase AAQM_2334 PF01914 MarC family integral membrane protein AAQM_2335 PF13472 GDSL-like Lipase/Acylhydrolase family AAQM_2335 PF02348 Cytidylyltransferase AAQM_2336 PF02277 Phosphoribosyltransferase AAQM_2337 PF00939 Sodium:sulfate symporter transmembrane region AAQM_2339 PF11412 Disulphide bond corrector protein DsbC AAQM_2339 PF02683 Cytochrome C biogenesis protein transmembrane region AAQM_2340 PF00085 Thioredoxin AAQM_2341 PF00581 Rhodanese-like domain AAQM_2344 PF18030 RimK PreATP-grasp domain AAQM_2344 PF08443 RimK-like ATP-grasp domain AAQM_2347 PF08495 FIST N domain AAQM_2347 PF10442 FIST C domain AAQM_2347 PF00990 Diguanylate cyclase, GGDEF domain AAQM_2347 PF00563 EAL domain AAQM_2348 PF02666 Phosphatidylserine decarboxylase AAQM_2350 PF06725 3D domain AAQM_2350 PF03562 MltA specific insert domain AAQM_2352 PF00012 Hsp70 protein AAQM_2353 PF01025 GrpE AAQM_2354 PF01628 HrcA protein C terminal domain AAQM_2357 PF00072 Response regulator receiver domain AAQM_2357 PF00158 Sigma-54 interaction domain AAQM_2358 PF08447 PAS fold AAQM_2358 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_2358 PF08448 PAS fold AAQM_2359 PF01416 tRNA pseudouridine synthase AAQM_2361 PF06750 Bacterial Peptidase A24 N-terminal domain AAQM_2361 PF01478 Type IV leader peptidase family AAQM_2362 PF01255 Putative undecaprenyl diphosphate synthase AAQM_2363 PF04127 DNA / pantothenate metabolism flavoprotein AAQM_2363 PF02441 Flavoprotein AAQM_2364 PF12804 MobA-like NTP transferase domain AAQM_2364 PF14602 Hexapeptide repeat of succinyl-transferase AAQM_2366 PF00271 Helicase conserved C-terminal domain AAQM_2366 PF08148 DSHCT (NUC185) domain AAQM_2366 PF00270 DEAD/DEAH box helicase AAQM_2367 PF05958 tRNA (Uracil-5-)-methyltransferase AAQM_2368 PF00669 Bacterial flagellin N-terminal helical region AAQM_2368 PF07196 Flagellin hook IN motif AAQM_2368 PF00700 Bacterial flagellin C-terminal helical region AAQM_2369 PF00700 Bacterial flagellin C-terminal helical region AAQM_2369 PF00669 Bacterial flagellin N-terminal helical region AAQM_2369 PF07196 Flagellin hook IN motif AAQM_2371 PF08666 SAF domain AAQM_2371 PF03102 NeuB family AAQM_2374 PF02348 Cytidylyltransferase AAQM_2375 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AAQM_2376 PF02719 Polysaccharide biosynthesis protein AAQM_2381 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AAQM_2381 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AAQM_2383 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AAQM_2384 PF16363 GDP-mannose 4,6 dehydratase AAQM_2386 PF00154 recA bacterial DNA recombination protein AAQM_2387 PF03952 Enolase, N-terminal domain AAQM_2387 PF00113 Enolase, C-terminal TIM barrel domain AAQM_2390 PF06968 Biotin and Thiamin Synthesis associated domain AAQM_2390 PF04055 Radical SAM superfamily AAQM_2392 PF01131 DNA topoisomerase AAQM_2392 PF01751 Toprim domain AAQM_2392 PF13368 Topoisomerase C-terminal repeat AAQM_2393 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AAQM_2394 PF02621 Menaquinone biosynthesis AAQM_2396 PF00361 Proton-conducting membrane transporter AAQM_2397 PF00361 Proton-conducting membrane transporter AAQM_2397 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AAQM_2398 PF00361 Proton-conducting membrane transporter AAQM_2398 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AAQM_2399 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AAQM_2400 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AAQM_2401 PF12838 4Fe-4S dicluster domain AAQM_2402 PF00146 NADH dehydrogenase AAQM_2403 PF00384 Molybdopterin oxidoreductase AAQM_2403 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AAQM_2403 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AAQM_2403 PF12838 4Fe-4S dicluster domain AAQM_2403 PF01568 Molydopterin dinucleotide binding domain AAQM_2406 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AAQM_2407 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AAQM_2408 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AAQM_2409 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AAQM_2410 PF17758 Proteasomal ATPase OB N-terminal domain AAQM_2410 PF16450 Proteasomal ATPase OB C-terminal domain AAQM_2410 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_2415 PF00916 Sulfate permease family AAQM_2415 PF01740 STAS domain AAQM_2416 PF01261 Xylose isomerase-like TIM barrel AAQM_2417 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_2418 PF00209 Sodium:neurotransmitter symporter family AAQM_2420 PF02677 Epoxyqueuosine reductase QueH AAQM_2421 PF02684 Lipid-A-disaccharide synthetase AAQM_2422 PF07977 FabA-like domain AAQM_2423 PF00132 Bacterial transferase hexapeptide (six repeats) AAQM_2423 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AAQM_2424 PF06689 ClpX C4-type zinc finger AAQM_2424 PF10431 C-terminal, D2-small domain, of ClpB protein AAQM_2424 PF07724 AAA domain (Cdc48 subfamily) AAQM_2427 PF00677 Lumazine binding domain AAQM_2428 PF13932 GidA associated domain AAQM_2428 PF01134 Glucose inhibited division protein A AAQM_2430 PF03372 Endonuclease/Exonuclease/phosphatase family AAQM_2431 PF02086 D12 class N6 adenine-specific DNA methyltransferase AAQM_2432 PF00580 UvrD/REP helicase N-terminal domain AAQM_2432 PF13361 UvrD-like helicase C-terminal domain AAQM_2436 PF00665 Integrase core domain AAQM_2439 PF00709 Adenylosuccinate synthetase AAQM_2444 PF12801 4Fe-4S binding domain AAQM_2444 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AAQM_2444 PF13746 4Fe-4S dicluster domain AAQM_2445 PF06418 CTP synthase N-terminus AAQM_2445 PF00117 Glutamine amidotransferase class-I AAQM_2446 PF17768 RecJ OB domain AAQM_2446 PF02272 DHHA1 domain AAQM_2446 PF01368 DHH family AAQM_2446 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AAQM_2452 PF14579 Helix-hairpin-helix motif AAQM_2452 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AAQM_2452 PF07733 Bacterial DNA polymerase III alpha NTPase domain AAQM_2452 PF02811 PHP domain AAQM_2453 PF01975 Survival protein SurE AAQM_2455 PF01165 Ribosomal protein S21 AAQM_2456 PF01967 MoaC family AAQM_2463 PF01027 Inhibitor of apoptosis-promoting Bax1 AAQM_2464 PF02581 Thiamine monophosphate synthase AAQM_2464 PF17792 ThiD2 family AAQM_2466 PF03840 Preprotein translocase SecG subunit AAQM_2468 PF01765 Ribosome recycling factor AAQM_2469 PF00156 Phosphoribosyl transferase domain AAQM_2471 PF12832 MFS_1 like family AAQM_2472 PF12794 Mechanosensitive ion channel inner membrane domain 1 AAQM_2472 PF00924 Mechanosensitive ion channel AAQM_2472 PF12795 Mechanosensitive ion channel porin domain AAQM_2473 PF01544 CorA-like Mg2+ transporter protein AAQM_2474 PF03883 Peroxide stress protein YaaA AAQM_2475 PF02810 SEC-C motif AAQM_2480 PF03167 Uracil DNA glycosylase superfamily AAQM_2481 PF00171 Aldehyde dehydrogenase family AAQM_2482 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AAQM_2482 PF00205 Thiamine pyrophosphate enzyme, central domain AAQM_2482 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AAQM_2483 PF04011 LemA family AAQM_2486 PF13419 Haloacid dehalogenase-like hydrolase AAQM_2489 PF07690 Major Facilitator Superfamily AAQM_2490 PF02203 Tar ligand binding domain homologue AAQM_2490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_2490 PF00672 HAMP domain AAQM_2499 PF01053 Cys/Met metabolism PLP-dependent enzyme AAQM_2500 PF02082 Transcriptional regulator AAQM_2501 PF00291 Pyridoxal-phosphate dependent enzyme AAQM_2503 PF01507 Phosphoadenosine phosphosulfate reductase family AAQM_2504 PF01507 Phosphoadenosine phosphosulfate reductase family AAQM_2505 PF00009 Elongation factor Tu GTP binding domain AAQM_2506 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AAQM_2506 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AAQM_2510 PF00266 Aminotransferase class-V AAQM_2511 PF00149 Calcineurin-like phosphoesterase AAQM_2512 PF00011 Hsp20/alpha crystallin family AAQM_2514 PF14403 Circularly permuted ATP-grasp type 2 AAQM_2514 PF04168 A predicted alpha-helical domain with a conserved ER motif. AAQM_2515 PF01841 Transglutaminase-like superfamily AAQM_2515 PF08379 Bacterial transglutaminase-like N-terminal region AAQM_2516 PF12857 TOBE-like domain AAQM_2516 PF17850 CysA C-terminal regulatory domain AAQM_2516 PF00005 ABC transporter AAQM_2517 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_2518 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_2519 PF08495 FIST N domain AAQM_2519 PF00563 EAL domain AAQM_2519 PF10442 FIST C domain AAQM_2519 PF00990 Diguanylate cyclase, GGDEF domain AAQM_2521 PF02082 Transcriptional regulator AAQM_2525 PF14403 Circularly permuted ATP-grasp type 2 AAQM_2527 PF00884 Sulfatase AAQM_2528 PF08019 Phosphoethanolamine transferase EptA/EptB AAQM_2528 PF00884 Sulfatase AAQM_2530 PF01219 Prokaryotic diacylglycerol kinase AAQM_2534 PF00486 Transcriptional regulatory protein, C terminal AAQM_2534 PF00072 Response regulator receiver domain AAQM_2536 PF04143 Sulphur transport AAQM_2537 PF01206 Sulfurtransferase TusA AAQM_2538 PF02511 Thymidylate synthase complementing protein AAQM_2539 PF04960 Glutaminase AAQM_2540 PF03458 UPF0126 domain AAQM_2542 PF00551 Formyl transferase AAQM_2542 PF02911 Formyl transferase, C-terminal domain AAQM_2543 PF02075 Crossover junction endodeoxyribonuclease RuvC