locus-tag class description ABED_0001 PF11638 DnaA N-terminal domain ABED_0001 PF08299 Bacterial dnaA protein helix-turn-helix ABED_0001 PF00308 Bacterial dnaA protein ABED_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ABED_0002 PF02767 DNA polymerase III beta subunit, central domain ABED_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ABED_0003 PF01751 Toprim domain ABED_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ABED_0003 PF00204 DNA gyrase B ABED_0004 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_0005 PF14489 QueF-like protein ABED_0007 PF09335 SNARE associated Golgi protein ABED_0008 PF13649 Methyltransferase domain ABED_0009 PF00005 ABC transporter ABED_0009 PF08402 TOBE domain ABED_0010 PF00528 Binding-protein-dependent transport system inner membrane component ABED_0013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_0013 PF03459 TOBE domain ABED_0015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_0015 PF03466 LysR substrate binding domain ABED_0018 PF00849 RNA pseudouridylate synthase ABED_0019 PF00206 Lyase ABED_0019 PF10397 Adenylosuccinate lyase C-terminus ABED_0020 PF00317 Ribonucleotide reductase, all-alpha domain ABED_0020 PF02867 Ribonucleotide reductase, barrel domain ABED_0020 PF03477 ATP cone domain ABED_0021 PF00268 Ribonucleotide reductase, small chain ABED_0025 PF00691 OmpA family ABED_0025 PF18393 MotY N-terminal domain ABED_0027 PF00107 Zinc-binding dehydrogenase ABED_0027 PF08240 Alcohol dehydrogenase GroES-like domain ABED_0028 PF01638 HxlR-like helix-turn-helix ABED_0029 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ABED_0029 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ABED_0030 PF02637 GatB domain ABED_0030 PF02934 GatB/GatE catalytic domain ABED_0033 PF02652 L-lactate permease ABED_0034 PF00072 Response regulator receiver domain ABED_0034 PF00486 Transcriptional regulatory protein, C terminal ABED_0035 PF00512 His Kinase A (phospho-acceptor) domain ABED_0035 PF00989 PAS fold ABED_0035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0036 PF02589 LUD domain ABED_0037 PF11870 Domain of unknown function (DUF3390) ABED_0037 PF13183 4Fe-4S dicluster domain ABED_0037 PF02589 LUD domain ABED_0038 PF02754 Cysteine-rich domain ABED_0039 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABED_0040 PF00364 Biotin-requiring enzyme ABED_0041 PF02785 Biotin carboxylase C-terminal domain ABED_0041 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABED_0041 PF00289 Biotin carboxylase, N-terminal domain ABED_0042 PF00270 DEAD/DEAH box helicase ABED_0042 PF00271 Helicase conserved C-terminal domain ABED_0043 PF01384 Phosphate transporter family ABED_0045 PF00733 Asparagine synthase ABED_0045 PF13537 Glutamine amidotransferase domain ABED_0047 PF02562 PhoH-like protein ABED_0047 PF13638 PIN domain ABED_0049 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABED_0049 PF16193 AAA C-terminal domain ABED_0049 PF12002 MgsA AAA+ ATPase C terminal ABED_0049 PF01661 Macro domain ABED_0050 PF01479 S4 domain ABED_0050 PF00849 RNA pseudouridylate synthase ABED_0051 PF00571 CBS domain ABED_0051 PF01380 SIS domain ABED_0052 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ABED_0052 PF00753 Metallo-beta-lactamase superfamily ABED_0052 PF17770 Ribonuclease J C-terminal domain ABED_0053 PF00398 Ribosomal RNA adenine dimethylase ABED_0054 PF00977 Histidine biosynthesis protein ABED_0057 PF04055 Radical SAM superfamily ABED_0058 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABED_0059 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ABED_0060 PF00486 Transcriptional regulatory protein, C terminal ABED_0060 PF00072 Response regulator receiver domain ABED_0065 PF00873 AcrB/AcrD/AcrF family ABED_0066 PF04264 YceI-like domain ABED_0071 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABED_0071 PF03129 Anticodon binding domain ABED_0071 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABED_0072 PF05198 Translation initiation factor IF-3, N-terminal domain ABED_0072 PF00707 Translation initiation factor IF-3, C-terminal domain ABED_0073 PF01632 Ribosomal protein L35 ABED_0074 PF00453 Ribosomal protein L20 ABED_0077 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_0078 PF12804 MobA-like NTP transferase domain ABED_0079 PF00330 Aconitase family (aconitate hydratase) ABED_0080 PF01252 Signal peptidase (SPase) II ABED_0081 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABED_0081 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABED_0081 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABED_0081 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABED_0082 PF01649 Ribosomal protein S20 ABED_0083 PF03462 PCRF domain ABED_0083 PF00472 RF-1 domain ABED_0085 PF12849 PBP superfamily domain ABED_0086 PF12792 CSS motif domain associated with EAL ABED_0086 PF00563 EAL domain ABED_0087 PF00528 Binding-protein-dependent transport system inner membrane component ABED_0088 PF00528 Binding-protein-dependent transport system inner membrane component ABED_0089 PF00005 ABC transporter ABED_0090 PF01895 PhoU domain ABED_0092 PF00486 Transcriptional regulatory protein, C terminal ABED_0092 PF00072 Response regulator receiver domain ABED_0093 PF00512 His Kinase A (phospho-acceptor) domain ABED_0093 PF00989 PAS fold ABED_0093 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0093 PF16736 Single Cache-like ABED_0094 PF00572 Ribosomal protein L13 ABED_0095 PF00380 Ribosomal protein S9/S16 ABED_0096 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABED_0097 PF13419 Haloacid dehalogenase-like hydrolase ABED_0101 PF09383 NIL domain ABED_0101 PF00005 ABC transporter ABED_0102 PF02405 Permease MlaE ABED_0103 PF02664 S-Ribosylhomocysteinase (LuxS) ABED_0106 PF00768 D-alanyl-D-alanine carboxypeptidase ABED_0106 PF07943 Penicillin-binding protein 5, C-terminal domain ABED_0109 PF02310 B12 binding domain ABED_0109 PF02965 Vitamin B12 dependent methionine synthase, activation domain ABED_0109 PF02574 Homocysteine S-methyltransferase ABED_0109 PF00809 Pterin binding enzyme ABED_0109 PF02607 B12 binding domain ABED_0110 PF01063 Amino-transferase class IV ABED_0113 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ABED_0113 PF01502 Phosphoribosyl-AMP cyclohydrolase ABED_0115 PF01883 Iron-sulfur cluster assembly protein ABED_0115 PF10609 NUBPL iron-transfer P-loop NTPase ABED_0116 PF01964 Radical SAM ThiC family ABED_0118 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ABED_0118 PF02542 YgbB family ABED_0120 PF04608 Phosphatidylglycerophosphatase A ABED_0121 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ABED_0121 PF00117 Glutamine amidotransferase class-I ABED_0123 PF00709 Adenylosuccinate synthetase ABED_0124 PF13393 Histidyl-tRNA synthetase ABED_0125 PF00266 Aminotransferase class-V ABED_0126 PF04264 YceI-like domain ABED_0127 PF01047 MarR family ABED_0128 PF04264 YceI-like domain ABED_0131 PF17954 Quercetinase C-terminal cupin domain ABED_0131 PF02678 Pirin ABED_0132 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABED_0132 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABED_0133 PF02769 AIR synthase related protein, C-terminal domain ABED_0133 PF00586 AIR synthase related protein, N-terminal domain ABED_0134 PF17284 Spermidine synthase tetramerisation domain ABED_0135 PF01121 Dephospho-CoA kinase ABED_0136 PF01678 Diaminopimelate epimerase ABED_0137 PF02222 ATP-grasp domain ABED_0140 PF02705 K+ potassium transporter ABED_0144 PF01197 Ribosomal protein L31 ABED_0145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABED_0146 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABED_0146 PF00588 SpoU rRNA Methylase family ABED_0148 PF00155 Aminotransferase class I and II ABED_0149 PF01842 ACT domain ABED_0149 PF00742 Homoserine dehydrogenase ABED_0149 PF03447 Homoserine dehydrogenase, NAD binding domain ABED_0152 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ABED_0152 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABED_0152 PF13288 DXP reductoisomerase C-terminal domain ABED_0155 PF00814 Glycoprotease family ABED_0156 PF01253 Translation initiation factor SUI1 ABED_0157 PF01256 Carbohydrate kinase ABED_0157 PF03853 YjeF-related protein N-terminus ABED_0158 PF03091 CutA1 divalent ion tolerance protein ABED_0159 PF05690 Thiazole biosynthesis protein ThiG ABED_0160 PF02436 Conserved carboxylase domain ABED_0160 PF00682 HMGL-like ABED_0162 PF12833 Helix-turn-helix domain ABED_0167 PF00456 Transketolase, thiamine diphosphate binding domain ABED_0167 PF02780 Transketolase, C-terminal domain ABED_0167 PF02779 Transketolase, pyrimidine binding domain ABED_0168 PF03788 LrgA family ABED_0169 PF04172 LrgB-like family ABED_0171 PF03994 Domain of Unknown Function (DUF350) ABED_0172 PF00375 Sodium:dicarboxylate symporter family ABED_0178 PF01553 Acyltransferase ABED_0178 PF00501 AMP-binding enzyme ABED_0178 PF13193 AMP-binding enzyme C-terminal domain ABED_0179 PF08335 GlnD PII-uridylyltransferase ABED_0179 PF01966 HD domain ABED_0182 PF12796 Ankyrin repeats (3 copies) ABED_0183 PF00543 Nitrogen regulatory protein P-II ABED_0185 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABED_0185 PF02154 Flagellar motor switch protein FliM ABED_0186 PF02119 Flagellar P-ring protein ABED_0188 PF01313 Bacterial export proteins, family 3 ABED_0193 PF02107 Flagellar L-ring protein ABED_0194 PF07559 Flagellar basal body protein FlaE ABED_0194 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_0194 PF00460 Flagella basal body rod protein ABED_0195 PF07196 Flagellin hook IN motif ABED_0195 PF02465 Flagellar hook-associated protein 2 N-terminus ABED_0195 PF07195 Flagellar hook-associated protein 2 C-terminus ABED_0196 PF02561 Flagellar protein FliS ABED_0198 PF01171 PP-loop family ABED_0199 PF18693 TRAM domain ABED_0199 PF04055 Radical SAM superfamily ABED_0199 PF00919 Uncharacterized protein family UPF0004 ABED_0200 PF02569 Pantoate-beta-alanine ligase ABED_0201 PF00528 Binding-protein-dependent transport system inner membrane component ABED_0202 PF01648 4'-phosphopantetheinyl transferase superfamily ABED_0203 PF03616 Sodium/glutamate symporter ABED_0204 PF03652 Holliday junction resolvase ABED_0207 PF00923 Transaldolase/Fructose-6-phosphate aldolase ABED_0208 PF01474 Class-II DAHP synthetase family ABED_0209 PF03502 Nucleoside-specific channel-forming protein, Tsx ABED_0210 PF03960 ArsC family ABED_0211 PF02686 Glu-tRNAGln amidotransferase C subunit ABED_0212 PF01702 Queuine tRNA-ribosyltransferase ABED_0214 PF00155 Aminotransferase class I and II ABED_0216 PF08245 Mur ligase middle domain ABED_0216 PF02875 Mur ligase family, glutamate ligase domain ABED_0216 PF01225 Mur ligase family, catalytic domain ABED_0218 PF04748 Divergent polysaccharide deacetylase ABED_0219 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ABED_0219 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ABED_0220 PF00773 RNB domain ABED_0221 PF02623 FliW protein ABED_0223 PF01250 Ribosomal protein S6 ABED_0224 PF00436 Single-strand binding protein family ABED_0225 PF01084 Ribosomal protein S18 ABED_0227 PF09190 DALR domain ABED_0227 PF01406 tRNA synthetases class I (C) catalytic domain ABED_0228 PF13184 NusA-like KH domain ABED_0228 PF08529 NusA N-terminal domain ABED_0230 PF00919 Uncharacterized protein family UPF0004 ABED_0230 PF01938 TRAM domain ABED_0230 PF04055 Radical SAM superfamily ABED_0231 PF04028 Domain of unknown function (DUF374) ABED_0234 PF04055 Radical SAM superfamily ABED_0236 PF00484 Carbonic anhydrase ABED_0237 PF00155 Aminotransferase class I and II ABED_0238 PF02021 Uncharacterised protein family UPF0102 ABED_0239 PF05690 Thiazole biosynthesis protein ThiG ABED_0239 PF02597 ThiS family ABED_0241 PF02887 Pyruvate kinase, alpha/beta domain ABED_0241 PF00391 PEP-utilising enzyme, mobile domain ABED_0241 PF00224 Pyruvate kinase, barrel domain ABED_0242 PF00202 Aminotransferase class-III ABED_0244 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABED_0244 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABED_0245 PF00425 chorismate binding enzyme ABED_0249 PF03831 PhnA domain ABED_0249 PF08274 PhnA Zinc-Ribbon ABED_0250 PF01863 Protein of unknown function DUF45 ABED_0251 PF01925 Sulfite exporter TauE/SafE ABED_0257 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABED_0257 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABED_0260 PF00285 Citrate synthase, C-terminal domain ABED_0261 PF00330 Aconitase family (aconitate hydratase) ABED_0261 PF00694 Aconitase C-terminal domain ABED_0262 PF04303 PrpF protein ABED_0264 PF00857 Isochorismatase family ABED_0266 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ABED_0266 PF03900 Porphobilinogen deaminase, C-terminal domain ABED_0268 PF12170 DNA polymerase III tau subunit V interacting with alpha ABED_0268 PF12169 DNA polymerase III subunits gamma and tau domain III ABED_0269 PF01177 Asp/Glu/Hydantoin racemase ABED_0270 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABED_0270 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABED_0271 PF07497 Rho termination factor, RNA-binding domain ABED_0271 PF07498 Rho termination factor, N-terminal domain ABED_0271 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_0272 PF00578 AhpC/TSA family ABED_0272 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABED_0273 PF00037 4Fe-4S binding domain ABED_0274 PF00334 Nucleoside diphosphate kinase ABED_0276 PF01783 Ribosomal L32p protein family ABED_0277 PF02504 Fatty acid synthesis protein ABED_0278 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABED_0278 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABED_0280 PF00350 Dynamin family ABED_0281 PF00350 Dynamin family ABED_0282 PF13183 4Fe-4S dicluster domain ABED_0282 PF13085 2Fe-2S iron-sulfur cluster binding domain ABED_0283 PF02910 Fumarate reductase flavoprotein C-term ABED_0283 PF00890 FAD binding domain ABED_0284 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABED_0285 PF00361 Proton-conducting membrane transporter ABED_0286 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ABED_0286 PF00361 Proton-conducting membrane transporter ABED_0287 PF00361 Proton-conducting membrane transporter ABED_0287 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABED_0288 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABED_0289 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABED_0290 PF12838 4Fe-4S dicluster domain ABED_0291 PF00146 NADH dehydrogenase ABED_0292 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ABED_0292 PF00384 Molybdopterin oxidoreductase ABED_0292 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABED_0293 PF00285 Citrate synthase, C-terminal domain ABED_0294 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ABED_0294 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ABED_0294 PF10531 SLBB domain ABED_0296 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ABED_0296 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ABED_0297 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_0298 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABED_0299 PF00155 Aminotransferase class I and II ABED_0300 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ABED_0301 PF06738 Putative threonine/serine exporter ABED_0301 PF12821 Threonine/Serine exporter, ThrE ABED_0302 PF06738 Putative threonine/serine exporter ABED_0304 PF03309 Type III pantothenate kinase ABED_0305 PF01634 ATP phosphoribosyltransferase ABED_0307 PF02203 Tar ligand binding domain homologue ABED_0307 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0307 PF00672 HAMP domain ABED_0309 PF00579 tRNA synthetases class I (W and Y) ABED_0310 PF00593 TonB dependent receptor ABED_0313 PF13649 Methyltransferase domain ABED_0314 PF00593 TonB dependent receptor ABED_0314 PF07715 TonB-dependent Receptor Plug Domain ABED_0316 PF02659 Putative manganese efflux pump ABED_0319 PF01545 Cation efflux family ABED_0319 PF16916 Dimerisation domain of Zinc Transporter ABED_0320 PF02403 Seryl-tRNA synthetase N-terminal domain ABED_0320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABED_0321 PF05140 ResB-like family ABED_0321 PF01578 Cytochrome C assembly protein ABED_0322 PF02335 Cytochrome c552 ABED_0323 PF03264 NapC/NirT cytochrome c family, N-terminal region ABED_0325 PF00563 EAL domain ABED_0325 PF00990 Diguanylate cyclase, GGDEF domain ABED_0325 PF08495 FIST N domain ABED_0325 PF10442 FIST C domain ABED_0326 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0326 PF08447 PAS fold ABED_0330 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ABED_0331 PF12801 4Fe-4S binding domain ABED_0331 PF00037 4Fe-4S binding domain ABED_0332 PF12838 4Fe-4S dicluster domain ABED_0332 PF12800 4Fe-4S binding domain ABED_0333 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABED_0333 PF01568 Molydopterin dinucleotide binding domain ABED_0333 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABED_0333 PF00384 Molybdopterin oxidoreductase ABED_0334 PF03480 Bacterial extracellular solute-binding protein, family 7 ABED_0335 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ABED_0336 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABED_0337 PF13426 PAS domain ABED_0337 PF00072 Response regulator receiver domain ABED_0337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0338 PF12833 Helix-turn-helix domain ABED_0338 PF00072 Response regulator receiver domain ABED_0339 PF03737 Aldolase/RraA ABED_0340 PF10414 Sirohaem synthase dimerisation region ABED_0340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABED_0340 PF14824 Sirohaem biosynthesis protein central ABED_0342 PF13545 Crp-like helix-turn-helix domain ABED_0342 PF00027 Cyclic nucleotide-binding domain ABED_0344 PF04055 Radical SAM superfamily ABED_0344 PF06463 Molybdenum Cofactor Synthesis C ABED_0345 PF00312 Ribosomal protein S15 ABED_0348 PF13380 CoA binding domain ABED_0349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0349 PF00512 His Kinase A (phospho-acceptor) domain ABED_0349 PF08521 Two-component sensor kinase N-terminal ABED_0350 PF00072 Response regulator receiver domain ABED_0350 PF00486 Transcriptional regulatory protein, C terminal ABED_0351 PF00639 PPIC-type PPIASE domain ABED_0352 PF01116 Fructose-bisphosphate aldolase class-II ABED_0353 PF00171 Aldehyde dehydrogenase family ABED_0355 PF02472 Biopolymer transport protein ExbD/TolR ABED_0356 PF01618 MotA/TolQ/ExbB proton channel family ABED_0358 PF01202 Shikimate kinase ABED_0359 PF00815 Histidinol dehydrogenase ABED_0361 PF00348 Polyprenyl synthetase ABED_0362 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ABED_0362 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ABED_0362 PF01488 Shikimate / quinate 5-dehydrogenase ABED_0363 PF04073 Aminoacyl-tRNA editing domain ABED_0363 PF03129 Anticodon binding domain ABED_0363 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABED_0364 PF05552 Conserved TM helix ABED_0364 PF00924 Mechanosensitive ion channel ABED_0365 PF12627 Probable RNA and SrmB- binding site of polymerase A ABED_0365 PF01743 Poly A polymerase head domain ABED_0365 PF01966 HD domain ABED_0369 PF02699 Preprotein translocase subunit ABED_0370 PF02355 Protein export membrane protein ABED_0371 PF02355 Protein export membrane protein ABED_0371 PF07549 SecD/SecF GG Motif ABED_0374 PF13677 Membrane MotB of proton-channel complex MotA/MotB ABED_0374 PF00691 OmpA family ABED_0375 PF01618 MotA/TolQ/ExbB proton channel family ABED_0377 PF00133 tRNA synthetases class I (I, L, M and V) ABED_0377 PF09334 tRNA synthetases class I (M) ABED_0377 PF13603 Leucyl-tRNA synthetase, Domain 2 ABED_0379 PF08245 Mur ligase middle domain ABED_0385 PF00270 DEAD/DEAH box helicase ABED_0385 PF00271 Helicase conserved C-terminal domain ABED_0385 PF02559 CarD-like/TRCF domain ABED_0385 PF03461 TRCF domain ABED_0385 PF17757 UvrB interaction domain ABED_0389 PF00486 Transcriptional regulatory protein, C terminal ABED_0389 PF00072 Response regulator receiver domain ABED_0390 PF08521 Two-component sensor kinase N-terminal ABED_0390 PF00512 His Kinase A (phospho-acceptor) domain ABED_0390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0392 PF02743 Cache domain ABED_0392 PF00672 HAMP domain ABED_0392 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0393 PF02954 Bacterial regulatory protein, Fis family ABED_0393 PF00072 Response regulator receiver domain ABED_0393 PF00158 Sigma-54 interaction domain ABED_0395 PF13426 PAS domain ABED_0395 PF00512 His Kinase A (phospho-acceptor) domain ABED_0395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0395 PF00672 HAMP domain ABED_0396 PF13277 YmdB-like protein ABED_0399 PF01209 ubiE/COQ5 methyltransferase family ABED_0400 PF02601 Exonuclease VII, large subunit ABED_0400 PF13742 OB-fold nucleic acid binding domain ABED_0401 PF01584 CheW-like domain ABED_0402 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABED_0403 PF02261 Aspartate decarboxylase ABED_0404 PF02575 YbaB/EbfC DNA-binding family ABED_0405 PF00348 Polyprenyl synthetase ABED_0406 PF00166 Chaperonin 10 Kd subunit ABED_0407 PF00118 TCP-1/cpn60 chaperonin family ABED_0408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0408 PF00512 His Kinase A (phospho-acceptor) domain ABED_0408 PF00672 HAMP domain ABED_0409 PF00072 Response regulator receiver domain ABED_0409 PF00486 Transcriptional regulatory protein, C terminal ABED_0410 PF00149 Calcineurin-like phosphoesterase ABED_0415 PF00005 ABC transporter ABED_0418 PF00459 Inositol monophosphatase family ABED_0419 PF01380 SIS domain ABED_0420 PF00438 S-adenosylmethionine synthetase, N-terminal domain ABED_0420 PF02772 S-adenosylmethionine synthetase, central domain ABED_0420 PF02773 S-adenosylmethionine synthetase, C-terminal domain ABED_0421 PF17848 Acetyl-coA carboxylase zinc finger domain ABED_0421 PF01039 Carboxyl transferase domain ABED_0422 PF02581 Thiamine monophosphate synthase ABED_0423 PF02590 Predicted SPOUT methyltransferase ABED_0425 PF01207 Dihydrouridine synthase (Dus) ABED_0427 PF17862 AAA+ lid domain ABED_0427 PF00004 ATPase family associated with various cellular activities (AAA) ABED_0427 PF01434 Peptidase family M41 ABED_0428 PF11849 Domain of unknown function (DUF3369) ABED_0429 PF00486 Transcriptional regulatory protein, C terminal ABED_0429 PF00072 Response regulator receiver domain ABED_0430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0430 PF08447 PAS fold ABED_0430 PF00989 PAS fold ABED_0430 PF00512 His Kinase A (phospho-acceptor) domain ABED_0431 PF08502 LeuA allosteric (dimerisation) domain ABED_0431 PF00682 HMGL-like ABED_0432 PF00085 Thioredoxin ABED_0434 PF00488 MutS domain V ABED_0434 PF05190 MutS family domain IV ABED_0434 PF01624 MutS domain I ABED_0434 PF05192 MutS domain III ABED_0434 PF05188 MutS domain II ABED_0435 PF00873 AcrB/AcrD/AcrF family ABED_0436 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_0442 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit ABED_0444 PF00664 ABC transporter transmembrane region ABED_0444 PF00005 ABC transporter ABED_0446 PF01266 FAD dependent oxidoreductase ABED_0447 PF00563 EAL domain ABED_0447 PF00990 Diguanylate cyclase, GGDEF domain ABED_0447 PF03707 Bacterial signalling protein N terminal repeat ABED_0448 PF00977 Histidine biosynthesis protein ABED_0449 PF01370 NAD dependent epimerase/dehydratase family ABED_0449 PF08338 Domain of unknown function (DUF1731) ABED_0450 PF00117 Glutamine amidotransferase class-I ABED_0454 PF00679 Elongation factor G C-terminus ABED_0454 PF06421 GTP-binding protein LepA C-terminus ABED_0454 PF03144 Elongation factor Tu domain 2 ABED_0454 PF00009 Elongation factor Tu GTP binding domain ABED_0455 PF02583 Metal-sensitive transcriptional repressor ABED_0456 PF00403 Heavy-metal-associated domain ABED_0457 PF00691 OmpA family ABED_0457 PF05736 OprF membrane domain ABED_0458 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABED_0458 PF14572 Phosphoribosyl synthetase-associated domain ABED_0462 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ABED_0463 PF00557 Metallopeptidase family M24 ABED_0463 PF01321 Creatinase/Prolidase N-terminal domain ABED_0464 PF01220 Dehydroquinase class II ABED_0465 PF01979 Amidohydrolase family ABED_0466 PF01343 Peptidase family S49 ABED_0467 PF00871 Acetokinase family ABED_0468 PF01515 Phosphate acetyl/butaryl transferase ABED_0469 PF00871 Acetokinase family ABED_0471 PF00871 Acetokinase family ABED_0472 PF14579 Helix-hairpin-helix motif ABED_0472 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABED_0472 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABED_0472 PF02811 PHP domain ABED_0472 PF11490 DNA polymerase III polC-type N-terminus II ABED_0472 PF00929 Exonuclease ABED_0472 PF14480 DNA polymerase III polC-type N-terminus I ABED_0474 PF00474 Sodium:solute symporter family ABED_0476 PF00474 Sodium:solute symporter family ABED_0478 PF00929 Exonuclease ABED_0478 PF11490 DNA polymerase III polC-type N-terminus II ABED_0478 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABED_0478 PF02811 PHP domain ABED_0478 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABED_0478 PF14579 Helix-hairpin-helix motif ABED_0480 PF00474 Sodium:solute symporter family ABED_0482 PF00072 Response regulator receiver domain ABED_0482 PF00486 Transcriptional regulatory protein, C terminal ABED_0483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0483 PF00672 HAMP domain ABED_0483 PF00512 His Kinase A (phospho-acceptor) domain ABED_0483 PF13426 PAS domain ABED_0484 PF18146 Damage-inducible protein CinA KH domain ABED_0484 PF02464 Competence-damaged protein ABED_0484 PF00994 Probable molybdopterin binding domain ABED_0485 PF06039 Malate:quinone oxidoreductase (Mqo) ABED_0486 PF00133 tRNA synthetases class I (I, L, M and V) ABED_0486 PF08264 Anticodon-binding domain of tRNA ABED_0489 PF02875 Mur ligase family, glutamate ligase domain ABED_0489 PF08245 Mur ligase middle domain ABED_0493 PF00072 Response regulator receiver domain ABED_0493 PF00486 Transcriptional regulatory protein, C terminal ABED_0494 PF07730 Histidine kinase ABED_0494 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0497 PF00248 Aldo/keto reductase family ABED_0498 PF01384 Phosphate transporter family ABED_0500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0500 PF02203 Tar ligand binding domain homologue ABED_0500 PF00672 HAMP domain ABED_0502 PF02203 Tar ligand binding domain homologue ABED_0502 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0502 PF00672 HAMP domain ABED_0503 PF03061 Thioesterase superfamily ABED_0505 PF01435 Peptidase family M48 ABED_0505 PF16491 CAAX prenyl protease N-terminal, five membrane helices ABED_0506 PF02646 RmuC family ABED_0508 PF03454 MoeA C-terminal region (domain IV) ABED_0508 PF03453 MoeA N-terminal region (domain I and II) ABED_0508 PF00994 Probable molybdopterin binding domain ABED_0510 PF01171 PP-loop family ABED_0514 PF00318 Ribosomal protein S2 ABED_0515 PF00889 Elongation factor TS ABED_0516 PF00005 ABC transporter ABED_0518 PF00625 Guanylate kinase ABED_0519 PF00563 EAL domain ABED_0519 PF08448 PAS fold ABED_0519 PF00990 Diguanylate cyclase, GGDEF domain ABED_0520 PF00403 Heavy-metal-associated domain ABED_0523 PF00005 ABC transporter ABED_0523 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABED_0524 PF00762 Ferrochelatase ABED_0525 PF07664 Ferrous iron transport protein B C terminus ABED_0525 PF07670 Nucleoside recognition ABED_0525 PF02421 Ferrous iron transport protein B ABED_0527 PF02698 DUF218 domain ABED_0528 PF00005 ABC transporter ABED_0529 PF00950 ABC 3 transport family ABED_0530 PF17783 CvfB-like winged helix domain ABED_0530 PF13509 S1 domain ABED_0531 PF08534 Redoxin ABED_0535 PF13361 UvrD-like helicase C-terminal domain ABED_0535 PF00580 UvrD/REP helicase N-terminal domain ABED_0536 PF00999 Sodium/hydrogen exchanger family ABED_0536 PF02080 TrkA-C domain ABED_0536 PF02254 TrkA-N domain ABED_0537 PF00133 tRNA synthetases class I (I, L, M and V) ABED_0537 PF10458 Valyl tRNA synthetase tRNA binding arm ABED_0537 PF08264 Anticodon-binding domain of tRNA ABED_0538 PF09962 Uncharacterized conserved protein (DUF2196) ABED_0540 PF07690 Major Facilitator Superfamily ABED_0541 PF01725 Ham1 family ABED_0545 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABED_0545 PF03807 NADP oxidoreductase coenzyme F420-dependent ABED_0546 PF13525 Outer membrane lipoprotein ABED_0547 PF00004 ATPase family associated with various cellular activities (AAA) ABED_0547 PF05362 Lon protease (S16) C-terminal proteolytic domain ABED_0547 PF02190 ATP-dependent protease La (LON) substrate-binding domain ABED_0549 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABED_0552 PF01047 MarR family ABED_0555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0555 PF08447 PAS fold ABED_0556 PF02203 Tar ligand binding domain homologue ABED_0556 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0556 PF00672 HAMP domain ABED_0557 PF13426 PAS domain ABED_0557 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0557 PF08447 PAS fold ABED_0561 PF00289 Biotin carboxylase, N-terminal domain ABED_0561 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABED_0561 PF02785 Biotin carboxylase C-terminal domain ABED_0562 PF01883 Iron-sulfur cluster assembly protein ABED_0563 PF02657 Fe-S metabolism associated domain ABED_0564 PF00266 Aminotransferase class-V ABED_0566 PF00005 ABC transporter ABED_0567 PF01458 Uncharacterized protein family (UPF0051) ABED_0568 PF00266 Aminotransferase class-V ABED_0569 PF01106 NifU-like domain ABED_0569 PF04324 BFD-like [2Fe-2S] binding domain ABED_0569 PF01592 NifU-like N terminal domain ABED_0570 PF00571 CBS domain ABED_0570 PF01769 Divalent cation transporter ABED_0570 PF03448 MgtE intracellular N domain ABED_0571 PF07694 5TMR of 5TMR-LYT ABED_0571 PF00990 Diguanylate cyclase, GGDEF domain ABED_0572 PF14698 Argininosuccinate lyase C-terminal ABED_0572 PF00206 Lyase ABED_0574 PF00899 ThiF family ABED_0575 PF01272 Transcription elongation factor, GreA/GreB, C-term ABED_0575 PF03449 Transcription elongation factor, N-terminal ABED_0577 PF12344 Ultra-violet resistance protein B ABED_0577 PF02151 UvrB/uvrC motif ABED_0577 PF04851 Type III restriction enzyme, res subunit ABED_0577 PF00271 Helicase conserved C-terminal domain ABED_0577 PF17757 UvrB interaction domain ABED_0578 PF02203 Tar ligand binding domain homologue ABED_0578 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0578 PF00672 HAMP domain ABED_0579 PF00633 Helix-hairpin-helix motif ABED_0579 PF10576 Iron-sulfur binding domain of endonuclease III ABED_0579 PF00730 HhH-GPD superfamily base excision DNA repair protein ABED_0583 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0583 PF02203 Tar ligand binding domain homologue ABED_0583 PF00672 HAMP domain ABED_0586 PF01627 Hpt domain ABED_0586 PF00072 Response regulator receiver domain ABED_0586 PF00486 Transcriptional regulatory protein, C terminal ABED_0587 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0587 PF00512 His Kinase A (phospho-acceptor) domain ABED_0587 PF00989 PAS fold ABED_0588 PF02203 Tar ligand binding domain homologue ABED_0588 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0588 PF00672 HAMP domain ABED_0592 PF02502 Ribose/Galactose Isomerase ABED_0593 PF10502 Signal peptidase, peptidase S26 ABED_0594 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABED_0594 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ABED_0595 PF14693 Ribosomal protein TL5, C-terminal domain ABED_0595 PF01386 Ribosomal L25p family ABED_0596 PF01195 Peptidyl-tRNA hydrolase ABED_0599 PF01520 N-acetylmuramoyl-L-alanine amidase ABED_0601 PF01479 S4 domain ABED_0601 PF00579 tRNA synthetases class I (W and Y) ABED_0602 PF02824 TGS domain ABED_0602 PF04607 Region found in RelA / SpoT proteins ABED_0602 PF13291 ACT domain ABED_0603 PF01192 RNA polymerase Rpb6 ABED_0604 PF00696 Amino acid kinase family ABED_0606 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ABED_0607 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ABED_0608 PF04715 Anthranilate synthase component I, N terminal region ABED_0608 PF00425 chorismate binding enzyme ABED_0610 PF00464 Serine hydroxymethyltransferase ABED_0611 PF00152 tRNA synthetases class II (D, K and N) ABED_0611 PF01336 OB-fold nucleic acid binding domain ABED_0613 PF04551 GcpE protein ABED_0614 PF00990 Diguanylate cyclase, GGDEF domain ABED_0615 PF00772 DnaB-like helicase N terminal domain ABED_0615 PF03796 DnaB-like helicase C terminal domain ABED_0617 PF02719 Polysaccharide biosynthesis protein ABED_0618 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABED_0620 PF03102 NeuB family ABED_0620 PF08666 SAF domain ABED_0621 PF02350 UDP-N-acetylglucosamine 2-epimerase ABED_0622 PF00483 Nucleotidyl transferase ABED_0623 PF02348 Cytidylyltransferase ABED_0624 PF00202 Aminotransferase class-III ABED_0626 PF00117 Glutamine amidotransferase class-I ABED_0627 PF00977 Histidine biosynthesis protein ABED_0629 PF00795 Carbon-nitrogen hydrolase ABED_0633 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_0634 PF01370 NAD dependent epimerase/dehydratase family ABED_0637 PF01370 NAD dependent epimerase/dehydratase family ABED_0639 PF08485 Polysaccharide biosynthesis protein C-terminal ABED_0639 PF02719 Polysaccharide biosynthesis protein ABED_0640 PF02350 UDP-N-acetylglucosamine 2-epimerase ABED_0641 PF04321 RmlD substrate binding domain ABED_0643 PF01370 NAD dependent epimerase/dehydratase family ABED_0644 PF00953 Glycosyl transferase family 4 ABED_0645 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ABED_0646 PF02719 Polysaccharide biosynthesis protein ABED_0648 PF01068 ATP dependent DNA ligase domain ABED_0648 PF14743 DNA ligase OB-like domain ABED_0649 PF00156 Phosphoribosyl transferase domain ABED_0650 PF00291 Pyridoxal-phosphate dependent enzyme ABED_0652 PF02789 Cytosol aminopeptidase family, N-terminal domain ABED_0652 PF00883 Cytosol aminopeptidase family, catalytic domain ABED_0654 PF02472 Biopolymer transport protein ExbD/TolR ABED_0655 PF01618 MotA/TolQ/ExbB proton channel family ABED_0658 PF02687 FtsX-like permease family ABED_0658 PF12704 MacB-like periplasmic core domain ABED_0658 PF00005 ABC transporter ABED_0659 PF00005 ABC transporter ABED_0659 PF02687 FtsX-like permease family ABED_0659 PF12704 MacB-like periplasmic core domain ABED_0668 PF01475 Ferric uptake regulator family ABED_0670 PF10415 Fumarase C C-terminus ABED_0670 PF00206 Lyase ABED_0672 PF13581 Histidine kinase-like ATPase domain ABED_0672 PF13426 PAS domain ABED_0672 PF07568 Histidine kinase ABED_0673 PF00072 Response regulator receiver domain ABED_0674 PF07715 TonB-dependent Receptor Plug Domain ABED_0674 PF00593 TonB dependent receptor ABED_0675 PF13640 2OG-Fe(II) oxygenase superfamily ABED_0675 PF18331 PKHD-type hydroxylase C-terminal domain ABED_0676 PF01070 FMN-dependent dehydrogenase ABED_0677 PF07715 TonB-dependent Receptor Plug Domain ABED_0677 PF00593 TonB dependent receptor ABED_0681 PF02554 Carbon starvation protein CstA ABED_0681 PF13722 5TM C-terminal transporter carbon starvation CstA ABED_0682 PF06071 Protein of unknown function (DUF933) ABED_0682 PF01926 50S ribosome-binding GTPase ABED_0686 PF06865 Pyrimidine/purine nucleoside phosphorylase ABED_0688 PF02769 AIR synthase related protein, C-terminal domain ABED_0688 PF00586 AIR synthase related protein, N-terminal domain ABED_0689 PF01142 tRNA pseudouridine synthase D (TruD) ABED_0691 PF00672 HAMP domain ABED_0691 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0691 PF02203 Tar ligand binding domain homologue ABED_0692 PF01330 RuvA N terminal domain ABED_0692 PF07499 RuvA, C-terminal domain ABED_0693 PF07478 D-ala D-ala ligase C-terminus ABED_0693 PF01820 D-ala D-ala ligase N-terminus ABED_0695 PF08245 Mur ligase middle domain ABED_0695 PF02875 Mur ligase family, glutamate ligase domain ABED_0696 PF01230 HIT domain ABED_0698 PF00338 Ribosomal protein S10p/S20e ABED_0699 PF00297 Ribosomal protein L3 ABED_0700 PF00573 Ribosomal protein L4/L1 family ABED_0701 PF00276 Ribosomal protein L23 ABED_0702 PF00181 Ribosomal Proteins L2, RNA binding domain ABED_0702 PF03947 Ribosomal Proteins L2, C-terminal domain ABED_0703 PF00203 Ribosomal protein S19 ABED_0704 PF00237 Ribosomal protein L22p/L17e ABED_0705 PF07650 KH domain ABED_0705 PF00189 Ribosomal protein S3, C-terminal domain ABED_0706 PF00252 Ribosomal protein L16p/L10e ABED_0707 PF00831 Ribosomal L29 protein ABED_0708 PF00366 Ribosomal protein S17 ABED_0709 PF00238 Ribosomal protein L14p/L23e ABED_0710 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ABED_0710 PF00467 KOW motif ABED_0711 PF00673 ribosomal L5P family C-terminus ABED_0711 PF00281 Ribosomal protein L5 ABED_0712 PF00253 Ribosomal protein S14p/S29e ABED_0713 PF00410 Ribosomal protein S8 ABED_0714 PF00347 Ribosomal protein L6 ABED_0715 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ABED_0716 PF03719 Ribosomal protein S5, C-terminal domain ABED_0716 PF00333 Ribosomal protein S5, N-terminal domain ABED_0717 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ABED_0718 PF00344 SecY translocase ABED_0719 PF00557 Metallopeptidase family M24 ABED_0720 PF01176 Translation initiation factor 1A / IF-1 ABED_0721 PF03167 Uracil DNA glycosylase superfamily ABED_0723 PF00152 tRNA synthetases class II (D, K and N) ABED_0723 PF01336 OB-fold nucleic acid binding domain ABED_0723 PF02938 GAD domain ABED_0725 PF04055 Radical SAM superfamily ABED_0725 PF08497 Radical SAM N-terminal ABED_0726 PF05191 Adenylate kinase, active site lid ABED_0729 PF00302 Chloramphenicol acetyltransferase ABED_0731 PF00107 Zinc-binding dehydrogenase ABED_0731 PF08240 Alcohol dehydrogenase GroES-like domain ABED_0732 PF00465 Iron-containing alcohol dehydrogenase ABED_0733 PF02203 Tar ligand binding domain homologue ABED_0733 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0733 PF00672 HAMP domain ABED_0734 PF01168 Alanine racemase, N-terminal domain ABED_0734 PF00842 Alanine racemase, C-terminal domain ABED_0735 PF02151 UvrB/uvrC motif ABED_0735 PF01541 GIY-YIG catalytic domain ABED_0735 PF08459 UvrC Helix-hairpin-helix N-terminal ABED_0736 PF02203 Tar ligand binding domain homologue ABED_0736 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0736 PF00672 HAMP domain ABED_0738 PF00672 HAMP domain ABED_0738 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0738 PF02203 Tar ligand binding domain homologue ABED_0739 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0739 PF00672 HAMP domain ABED_0739 PF02203 Tar ligand binding domain homologue ABED_0741 PF08360 QacR-like protein, C-terminal region ABED_0741 PF00440 Bacterial regulatory proteins, tetR family ABED_0742 PF00873 AcrB/AcrD/AcrF family ABED_0743 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_0743 PF00529 HlyD membrane-fusion protein of T1SS ABED_0748 PF08448 PAS fold ABED_0748 PF00990 Diguanylate cyclase, GGDEF domain ABED_0749 PF03372 Endonuclease/Exonuclease/phosphatase family ABED_0753 PF08212 Lipocalin-like domain ABED_0756 PF03109 ABC1 family ABED_0758 PF00563 EAL domain ABED_0758 PF12792 CSS motif domain associated with EAL ABED_0759 PF00072 Response regulator receiver domain ABED_0759 PF04397 LytTr DNA-binding domain ABED_0760 PF13492 GAF domain ABED_0760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0760 PF06580 Histidine kinase ABED_0760 PF07694 5TMR of 5TMR-LYT ABED_0761 PF01593 Flavin containing amine oxidoreductase ABED_0766 PF00342 Phosphoglucose isomerase ABED_0767 PF00483 Nucleotidyl transferase ABED_0768 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABED_0768 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABED_0768 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABED_0768 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABED_0769 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0769 PF02203 Tar ligand binding domain homologue ABED_0769 PF00672 HAMP domain ABED_0770 PF08447 PAS fold ABED_0770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0771 PF01361 Tautomerase enzyme ABED_0772 PF03466 LysR substrate binding domain ABED_0772 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_0773 PF00218 Indole-3-glycerol phosphate synthase ABED_0775 PF03692 Putative zinc- or iron-chelating domain ABED_0776 PF05175 Methyltransferase small domain ABED_0778 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ABED_0778 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ABED_0778 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ABED_0779 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABED_0781 PF00929 Exonuclease ABED_0781 PF02811 PHP domain ABED_0781 PF14579 Helix-hairpin-helix motif ABED_0781 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABED_0781 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABED_0781 PF14480 DNA polymerase III polC-type N-terminus I ABED_0781 PF11490 DNA polymerase III polC-type N-terminus II ABED_0782 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ABED_0783 PF00834 Ribulose-phosphate 3 epimerase family ABED_0784 PF02253 Phospholipase A1 ABED_0786 PF00293 NUDIX domain ABED_0787 PF04461 Protein of unknown function (DUF520) ABED_0789 PF04241 Protein of unknown function (DUF423) ABED_0790 PF00156 Phosphoribosyl transferase domain ABED_0793 PF01168 Alanine racemase, N-terminal domain ABED_0805 PF01420 Type I restriction modification DNA specificity domain ABED_0809 PF18766 SWI2/SNF2 ATPase ABED_0809 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ABED_0809 PF11867 Domain of unknown function (DUF3387) ABED_0817 PF07804 HipA-like C-terminal domain ABED_0817 PF13657 HipA N-terminal domain ABED_0819 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0819 PF08447 PAS fold ABED_0820 PF00672 HAMP domain ABED_0820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0820 PF02203 Tar ligand binding domain homologue ABED_0821 PF02203 Tar ligand binding domain homologue ABED_0821 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0821 PF00672 HAMP domain ABED_0823 PF02163 Peptidase family M50 ABED_0823 PF17820 PDZ domain ABED_0824 PF01066 CDP-alcohol phosphatidyltransferase ABED_0826 PF00701 Dihydrodipicolinate synthetase family ABED_0828 PF01180 Dihydroorotate dehydrogenase ABED_0829 PF00664 ABC transporter transmembrane region ABED_0829 PF00005 ABC transporter ABED_0830 PF03023 Lipid II flippase MurJ ABED_0833 PF02130 Uncharacterized protein family UPF0054 ABED_0835 PF03575 Peptidase family S51 ABED_0836 PF18073 Rubredoxin metal binding domain ABED_0837 PF05728 Uncharacterised protein family (UPF0227) ABED_0838 PF03150 Di-haem cytochrome c peroxidase ABED_0838 PF14376 Haem-binding domain ABED_0838 PF00034 Cytochrome c ABED_0839 PF03707 Bacterial signalling protein N terminal repeat ABED_0839 PF00563 EAL domain ABED_0839 PF00990 Diguanylate cyclase, GGDEF domain ABED_0841 PF00448 SRP54-type protein, GTPase domain ABED_0842 PF00578 AhpC/TSA family ABED_0843 PF01812 5-formyltetrahydrofolate cyclo-ligase family ABED_0844 PF00013 KH domain ABED_0844 PF01966 HD domain ABED_0844 PF12072 Domain of unknown function (DUF3552) ABED_0846 PF00528 Binding-protein-dependent transport system inner membrane component ABED_0846 PF12911 N-terminal TM domain of oligopeptide transport permease C ABED_0847 PF00106 short chain dehydrogenase ABED_0851 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABED_0853 PF00486 Transcriptional regulatory protein, C terminal ABED_0853 PF00072 Response regulator receiver domain ABED_0854 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0854 PF00512 His Kinase A (phospho-acceptor) domain ABED_0855 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABED_0855 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABED_0856 PF00990 Diguanylate cyclase, GGDEF domain ABED_0856 PF17151 Periplasmic sensor domain ABED_0857 PF09424 Yqey-like protein ABED_0860 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_0861 PF00561 alpha/beta hydrolase fold ABED_0864 PF01042 Endoribonuclease L-PSP ABED_0867 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ABED_0869 PF02540 NAD synthase ABED_0869 PF00958 GMP synthase C terminal domain ABED_0869 PF00117 Glutamine amidotransferase class-I ABED_0870 PF00890 FAD binding domain ABED_0872 PF01863 Protein of unknown function DUF45 ABED_0873 PF00155 Aminotransferase class I and II ABED_0874 PF01545 Cation efflux family ABED_0874 PF16916 Dimerisation domain of Zinc Transporter ABED_0875 PF01966 HD domain ABED_0875 PF00072 Response regulator receiver domain ABED_0876 PF00211 Adenylate and Guanylate cyclase catalytic domain ABED_0881 PF03062 MBOAT, membrane-bound O-acyltransferase family ABED_0883 PF07690 Major Facilitator Superfamily ABED_0885 PF01891 Cobalt uptake substrate-specific transmembrane region ABED_0885 PF13190 PDGLE domain ABED_0888 PF00005 ABC transporter ABED_0889 PF17287 POTRA domain ABED_0889 PF08479 POTRA domain, ShlB-type ABED_0889 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ABED_0890 PF05594 Haemagluttinin repeat ABED_0890 PF04829 Pre-toxin domain with VENN motif ABED_0890 PF15526 Novel toxin 21 ABED_0890 PF15526 Novel toxin 21 ABED_0890 PF05860 haemagglutination activity domain ABED_0890 PF05594 Haemagluttinin repeat ABED_0890 PF13332 Hemagglutinin repeat ABED_0890 PF13332 Hemagglutinin repeat ABED_0890 PF04829 Pre-toxin domain with VENN motif ABED_0890 PF05860 haemagglutination activity domain ABED_0898 PF03793 PASTA domain ABED_0898 PF00069 Protein kinase domain ABED_0900 PF01594 AI-2E family transporter ABED_0905 PF17755 UvrA DNA-binding domain ABED_0905 PF17760 UvrA interaction domain ABED_0907 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0907 PF08447 PAS fold ABED_0908 PF01925 Sulfite exporter TauE/SafE ABED_0909 PF06426 Serine acetyltransferase, N-terminal ABED_0909 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_0910 PF17944 Arginine decarboxylase C-terminal helical extension ABED_0910 PF17810 Arginine decarboxylase helical bundle domain ABED_0910 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABED_0911 PF13393 Histidyl-tRNA synthetase ABED_0911 PF03129 Anticodon binding domain ABED_0912 PF02223 Thymidylate kinase ABED_0913 PF01467 Cytidylyltransferase-like ABED_0914 PF02441 Flavoprotein ABED_0916 PF01281 Ribosomal protein L9, N-terminal domain ABED_0916 PF03948 Ribosomal protein L9, C-terminal domain ABED_0917 PF00227 Proteasome subunit ABED_0918 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_0918 PF07724 AAA domain (Cdc48 subfamily) ABED_0920 PF01026 TatD related DNase ABED_0922 PF05036 Sporulation related domain ABED_0922 PF03330 Lytic transglycolase ABED_0923 PF00475 Imidazoleglycerol-phosphate dehydratase ABED_0927 PF01926 50S ribosome-binding GTPase ABED_0932 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABED_0933 PF00392 Bacterial regulatory proteins, gntR family ABED_0933 PF00155 Aminotransferase class I and II ABED_0936 PF00873 AcrB/AcrD/AcrF family ABED_0937 PF00873 AcrB/AcrD/AcrF family ABED_0938 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_0940 PF11849 Domain of unknown function (DUF3369) ABED_0941 PF00813 FliP family ABED_0942 PF03717 Penicillin-binding Protein dimerisation domain ABED_0942 PF00905 Penicillin binding protein transpeptidase domain ABED_0946 PF00005 ABC transporter ABED_0947 PF02390 Putative methyltransferase ABED_0949 PF01479 S4 domain ABED_0949 PF00849 RNA pseudouridylate synthase ABED_0950 PF01098 Cell cycle protein ABED_0952 PF00202 Aminotransferase class-III ABED_0953 PF06865 Pyrimidine/purine nucleoside phosphorylase ABED_0957 PF00140 Sigma-70 factor, region 1.2 ABED_0957 PF04542 Sigma-70 region 2 ABED_0957 PF04539 Sigma-70 region 3 ABED_0957 PF04545 Sigma-70, region 4 ABED_0958 PF00694 Aconitase C-terminal domain ABED_0959 PF00180 Isocitrate/isopropylmalate dehydrogenase ABED_0962 PF00444 Ribosomal protein L36 ABED_0963 PF00416 Ribosomal protein S13/S18 ABED_0964 PF00411 Ribosomal protein S11 ABED_0965 PF00163 Ribosomal protein S4/S9 N-terminal domain ABED_0965 PF01479 S4 domain ABED_0966 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ABED_0966 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ABED_0966 PF01000 RNA polymerase Rpb3/RpoA insert domain ABED_0967 PF01196 Ribosomal protein L17 ABED_0968 PF01425 Amidase ABED_0969 PF00478 IMP dehydrogenase / GMP reductase domain ABED_0969 PF00571 CBS domain ABED_0973 PF00486 Transcriptional regulatory protein, C terminal ABED_0973 PF00072 Response regulator receiver domain ABED_0979 PF00684 DnaJ central domain ABED_0979 PF00226 DnaJ domain ABED_0979 PF01556 DnaJ C terminal domain ABED_0981 PF00933 Glycosyl hydrolase family 3 N terminal domain ABED_0982 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ABED_0982 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0982 PF17203 Single cache domain 3 ABED_0983 PF09456 RcsC Alpha-Beta-Loop (ABL) ABED_0983 PF00512 His Kinase A (phospho-acceptor) domain ABED_0983 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0983 PF00072 Response regulator receiver domain ABED_0987 PF00005 ABC transporter ABED_0990 PF08240 Alcohol dehydrogenase GroES-like domain ABED_0990 PF00107 Zinc-binding dehydrogenase ABED_0994 PF01638 HxlR-like helix-turn-helix ABED_0995 PF02525 Flavodoxin-like fold ABED_0997 PF00893 Small Multidrug Resistance protein ABED_1000 PF01161 Phosphatidylethanolamine-binding protein ABED_1001 PF03466 LysR substrate binding domain ABED_1001 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_1002 PF03601 Conserved hypothetical protein 698 ABED_1008 PF01638 HxlR-like helix-turn-helix ABED_1009 PF02525 Flavodoxin-like fold ABED_1011 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABED_1013 PF00881 Nitroreductase family ABED_1015 PF12848 ABC transporter ABED_1015 PF00005 ABC transporter ABED_1016 PF03061 Thioesterase superfamily ABED_1017 PF00672 HAMP domain ABED_1017 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1017 PF02203 Tar ligand binding domain homologue ABED_1018 PF03120 NAD-dependent DNA ligase OB-fold domain ABED_1018 PF12826 Helix-hairpin-helix motif ABED_1018 PF01653 NAD-dependent DNA ligase adenylation domain ABED_1018 PF00533 BRCA1 C Terminus (BRCT) domain ABED_1019 PF03738 Glutathionylspermidine synthase preATP-grasp ABED_1021 PF01966 HD domain ABED_1022 PF08501 Shikimate dehydrogenase substrate binding domain ABED_1025 PF00390 Malic enzyme, N-terminal domain ABED_1025 PF03949 Malic enzyme, NAD binding domain ABED_1025 PF01515 Phosphate acetyl/butaryl transferase ABED_1026 PF01842 ACT domain ABED_1026 PF00551 Formyl transferase ABED_1027 PF00588 SpoU rRNA Methylase family ABED_1032 PF00072 Response regulator receiver domain ABED_1032 PF00486 Transcriptional regulatory protein, C terminal ABED_1034 PF16200 C-terminal region of band_7 ABED_1034 PF01145 SPFH domain / Band 7 family ABED_1039 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ABED_1040 PF00849 RNA pseudouridylate synthase ABED_1040 PF01479 S4 domain ABED_1045 PF07715 TonB-dependent Receptor Plug Domain ABED_1045 PF00593 TonB dependent receptor ABED_1047 PF00005 ABC transporter ABED_1048 PF01032 FecCD transport family ABED_1049 PF00999 Sodium/hydrogen exchanger family ABED_1050 PF00300 Histidine phosphatase superfamily (branch 1) ABED_1051 PF00664 ABC transporter transmembrane region ABED_1051 PF00005 ABC transporter ABED_1053 PF00072 Response regulator receiver domain ABED_1053 PF00486 Transcriptional regulatory protein, C terminal ABED_1054 PF13426 PAS domain ABED_1054 PF00672 HAMP domain ABED_1054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1054 PF00512 His Kinase A (phospho-acceptor) domain ABED_1059 PF00990 Diguanylate cyclase, GGDEF domain ABED_1059 PF00072 Response regulator receiver domain ABED_1061 PF00271 Helicase conserved C-terminal domain ABED_1061 PF00270 DEAD/DEAH box helicase ABED_1062 PF00989 PAS fold ABED_1062 PF08447 PAS fold ABED_1062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1062 PF00512 His Kinase A (phospho-acceptor) domain ABED_1063 PF00486 Transcriptional regulatory protein, C terminal ABED_1063 PF00072 Response regulator receiver domain ABED_1064 PF00691 OmpA family ABED_1064 PF05736 OprF membrane domain ABED_1065 PF00005 ABC transporter ABED_1065 PF03412 Peptidase C39 family ABED_1065 PF00664 ABC transporter transmembrane region ABED_1067 PF00196 Bacterial regulatory proteins, luxR family ABED_1067 PF00072 Response regulator receiver domain ABED_1070 PF01761 3-dehydroquinate synthase ABED_1072 PF00919 Uncharacterized protein family UPF0004 ABED_1072 PF04055 Radical SAM superfamily ABED_1073 PF00004 ATPase family associated with various cellular activities (AAA) ABED_1073 PF17862 AAA+ lid domain ABED_1073 PF06480 FtsH Extracellular ABED_1073 PF01434 Peptidase family M41 ABED_1075 PF00994 Probable molybdopterin binding domain ABED_1076 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABED_1085 PF01568 Molydopterin dinucleotide binding domain ABED_1085 PF18364 Molybdopterin oxidoreductase N-terminal domain ABED_1085 PF00384 Molybdopterin oxidoreductase ABED_1086 PF00561 alpha/beta hydrolase fold ABED_1087 PF16925 Tetracyclin repressor-like, C-terminal domain ABED_1087 PF00440 Bacterial regulatory proteins, tetR family ABED_1088 PF00488 MutS domain V ABED_1088 PF01713 Smr domain ABED_1089 PF01595 Cyclin M transmembrane N-terminal domain ABED_1089 PF03471 Transporter associated domain ABED_1089 PF00571 CBS domain ABED_1091 PF07687 Peptidase dimerisation domain ABED_1091 PF01546 Peptidase family M20/M25/M40 ABED_1092 PF00909 Ammonium Transporter Family ABED_1093 PF00543 Nitrogen regulatory protein P-II ABED_1095 PF02541 Ppx/GppA phosphatase family ABED_1097 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABED_1097 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABED_1097 PF00205 Thiamine pyrophosphate enzyme, central domain ABED_1098 PF10369 Small subunit of acetolactate synthase ABED_1099 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ABED_1099 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_1100 PF17854 FtsK alpha domain ABED_1100 PF01580 FtsK/SpoIIIE family ABED_1100 PF09397 Ftsk gamma domain ABED_1101 PF00072 Response regulator receiver domain ABED_1101 PF00486 Transcriptional regulatory protein, C terminal ABED_1103 PF02810 SEC-C motif ABED_1104 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ABED_1105 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ABED_1105 PF01926 50S ribosome-binding GTPase ABED_1106 PF01740 STAS domain ABED_1106 PF00916 Sulfate permease family ABED_1108 PF02844 Phosphoribosylglycinamide synthetase, N domain ABED_1108 PF02843 Phosphoribosylglycinamide synthetase, C domain ABED_1108 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ABED_1110 PF03968 OstA-like protein ABED_1110 PF04453 LPS transport system D ABED_1112 PF00013 KH domain ABED_1112 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ABED_1112 PF01138 3' exoribonuclease family, domain 1 ABED_1112 PF00575 S1 RNA binding domain ABED_1112 PF03725 3' exoribonuclease family, domain 2 ABED_1113 PF00072 Response regulator receiver domain ABED_1114 PF09078 CheY binding ABED_1114 PF01584 CheW-like domain ABED_1114 PF01627 Hpt domain ABED_1114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1114 PF02895 Signal transducing histidine kinase, homodimeric domain ABED_1115 PF01739 CheR methyltransferase, SAM binding domain ABED_1115 PF03705 CheR methyltransferase, all-alpha domain ABED_1116 PF03975 CheD chemotactic sensory transduction ABED_1117 PF00072 Response regulator receiver domain ABED_1117 PF01339 CheB methylesterase ABED_1119 PF07690 Major Facilitator Superfamily ABED_1120 PF18644 Phage integrase SAM-like domain ABED_1120 PF00589 Phage integrase family ABED_1124 PF01432 Peptidase family M3 ABED_1125 PF17827 PrmC N-terminal domain ABED_1125 PF05175 Methyltransferase small domain ABED_1126 PF04055 Radical SAM superfamily ABED_1126 PF06969 HemN C-terminal domain ABED_1127 PF00293 NUDIX domain ABED_1128 PF01842 ACT domain ABED_1128 PF00696 Amino acid kinase family ABED_1128 PF13840 ACT domain ABED_1131 PF00809 Pterin binding enzyme ABED_1132 PF01842 ACT domain ABED_1132 PF02153 Prephenate dehydrogenase ABED_1133 PF07244 Surface antigen variable number repeat ABED_1133 PF01103 Surface antigen ABED_1134 PF04055 Radical SAM superfamily ABED_1135 PF05193 Peptidase M16 inactive domain ABED_1136 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABED_1141 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ABED_1143 PF00133 tRNA synthetases class I (I, L, M and V) ABED_1143 PF01588 Putative tRNA binding domain ABED_1143 PF09334 tRNA synthetases class I (M) ABED_1147 PF00682 HMGL-like ABED_1147 PF02436 Conserved carboxylase domain ABED_1148 PF01293 Phosphoenolpyruvate carboxykinase ABED_1149 PF00925 GTP cyclohydrolase II ABED_1149 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABED_1150 PF02092 Glycyl-tRNA synthetase beta subunit ABED_1153 PF02069 Prokaryotic metallothionein ABED_1154 PF02527 rRNA small subunit methyltransferase G ABED_1155 PF00925 GTP cyclohydrolase II ABED_1156 PF00490 Delta-aminolevulinic acid dehydratase ABED_1157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1157 PF13426 PAS domain ABED_1157 PF00072 Response regulator receiver domain ABED_1158 PF00072 Response regulator receiver domain ABED_1158 PF00486 Transcriptional regulatory protein, C terminal ABED_1161 PF03477 ATP cone domain ABED_1161 PF00317 Ribonucleotide reductase, all-alpha domain ABED_1161 PF02867 Ribonucleotide reductase, barrel domain ABED_1162 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABED_1162 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABED_1163 PF06969 HemN C-terminal domain ABED_1163 PF04055 Radical SAM superfamily ABED_1164 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ABED_1165 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABED_1166 PF02540 NAD synthase ABED_1168 PF04324 BFD-like [2Fe-2S] binding domain ABED_1168 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_1168 PF18267 Rubredoxin NAD+ reductase C-terminal domain ABED_1168 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABED_1168 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABED_1169 PF00226 DnaJ domain ABED_1169 PF05099 Tellurite resistance protein TerB ABED_1172 PF00902 Sec-independent protein translocase protein (TatC) ABED_1173 PF02547 Queuosine biosynthesis protein ABED_1174 PF00929 Exonuclease ABED_1177 PF03781 Sulfatase-modifying factor enzyme 1 ABED_1177 PF12867 DinB superfamily ABED_1181 PF02754 Cysteine-rich domain ABED_1181 PF13183 4Fe-4S dicluster domain ABED_1181 PF02665 Nitrate reductase gamma subunit ABED_1182 PF01790 Prolipoprotein diacylglyceryl transferase ABED_1185 PF01612 3'-5' exonuclease ABED_1185 PF00476 DNA polymerase family A ABED_1185 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ABED_1185 PF01367 5'-3' exonuclease, C-terminal SAM fold ABED_1187 PF02348 Cytidylyltransferase ABED_1188 PF08495 FIST N domain ABED_1188 PF10442 FIST C domain ABED_1188 PF00563 EAL domain ABED_1188 PF00990 Diguanylate cyclase, GGDEF domain ABED_1189 PF00005 ABC transporter ABED_1189 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABED_1190 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABED_1191 PF00591 Glycosyl transferase family, a/b domain ABED_1191 PF02885 Glycosyl transferase family, helical bundle domain ABED_1194 PF00764 Arginosuccinate synthase ABED_1195 PF13193 AMP-binding enzyme C-terminal domain ABED_1195 PF00501 AMP-binding enzyme ABED_1196 PF03062 MBOAT, membrane-bound O-acyltransferase family ABED_1199 PF00550 Phosphopantetheine attachment site ABED_1200 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_1201 PF02254 TrkA-N domain ABED_1201 PF02080 TrkA-C domain ABED_1202 PF02386 Cation transport protein ABED_1203 PF00486 Transcriptional regulatory protein, C terminal ABED_1203 PF00072 Response regulator receiver domain ABED_1204 PF13493 Domain of unknown function (DUF4118) ABED_1204 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1204 PF00512 His Kinase A (phospho-acceptor) domain ABED_1204 PF02702 Osmosensitive K+ channel His kinase sensor domain ABED_1207 PF02132 RecR protein ABED_1207 PF13662 Toprim domain ABED_1208 PF00684 DnaJ central domain ABED_1208 PF00226 DnaJ domain ABED_1208 PF01556 DnaJ C terminal domain ABED_1209 PF00291 Pyridoxal-phosphate dependent enzyme ABED_1213 PF00753 Metallo-beta-lactamase superfamily ABED_1215 PF00990 Diguanylate cyclase, GGDEF domain ABED_1216 PF08003 Protein of unknown function (DUF1698) ABED_1218 PF05140 ResB-like family ABED_1218 PF01578 Cytochrome C assembly protein ABED_1219 PF07687 Peptidase dimerisation domain ABED_1219 PF01546 Peptidase family M20/M25/M40 ABED_1221 PF00672 HAMP domain ABED_1221 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1221 PF02203 Tar ligand binding domain homologue ABED_1223 PF02810 SEC-C motif ABED_1223 PF07517 SecA DEAD-like domain ABED_1223 PF01043 SecA preprotein cross-linking domain ABED_1223 PF00271 Helicase conserved C-terminal domain ABED_1223 PF07516 SecA Wing and Scaffold domain ABED_1224 PF02687 FtsX-like permease family ABED_1224 PF12704 MacB-like periplasmic core domain ABED_1226 PF02618 YceG-like family ABED_1227 PF03971 Monomeric isocitrate dehydrogenase ABED_1228 PF00056 lactate/malate dehydrogenase, NAD binding domain ABED_1228 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ABED_1233 PF01795 MraW methylase family ABED_1235 PF00216 Bacterial DNA-binding protein ABED_1243 PF17841 BID domain of Bartonella effector protein (Bep) ABED_1243 PF02661 Fic/DOC family ABED_1259 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ABED_1261 PF02899 Phage integrase, N-terminal SAM-like domain ABED_1261 PF00589 Phage integrase family ABED_1262 PF02082 Transcriptional regulator ABED_1263 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABED_1265 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ABED_1265 PF01266 FAD dependent oxidoreductase ABED_1267 PF00072 Response regulator receiver domain ABED_1269 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1269 PF00512 His Kinase A (phospho-acceptor) domain ABED_1270 PF01556 DnaJ C terminal domain ABED_1270 PF00226 DnaJ domain ABED_1271 PF13411 MerR HTH family regulatory protein ABED_1272 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_1273 PF00005 ABC transporter ABED_1276 PF03741 Integral membrane protein TerC family ABED_1277 PF05525 Branched-chain amino acid transport protein ABED_1280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABED_1280 PF02142 MGS-like domain ABED_1280 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABED_1282 PF06965 Na+/H+ antiporter 1 ABED_1284 PF00561 alpha/beta hydrolase fold ABED_1285 PF07715 TonB-dependent Receptor Plug Domain ABED_1285 PF00593 TonB dependent receptor ABED_1287 PF00091 Tubulin/FtsZ family, GTPase domain ABED_1287 PF12327 FtsZ family, C-terminal domain ABED_1288 PF02491 SHS2 domain inserted in FTSA ABED_1292 PF03960 ArsC family ABED_1296 PF00005 ABC transporter ABED_1296 PF16326 ABC transporter C-terminal domain ABED_1296 PF12848 ABC transporter ABED_1298 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ABED_1298 PF14602 Hexapeptide repeat of succinyl-transferase ABED_1299 PF13419 Haloacid dehalogenase-like hydrolase ABED_1301 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ABED_1301 PF00270 DEAD/DEAH box helicase ABED_1301 PF17764 3′ DNA-binding domain (3′BD) ABED_1301 PF18074 Primosomal protein N C-terminal domain ABED_1301 PF00271 Helicase conserved C-terminal domain ABED_1306 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ABED_1307 PF02769 AIR synthase related protein, C-terminal domain ABED_1307 PF00586 AIR synthase related protein, N-terminal domain ABED_1309 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABED_1309 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABED_1311 PF01924 Hydrogenase formation hypA family ABED_1312 PF01455 HupF/HypC family ABED_1313 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABED_1315 PF02203 Tar ligand binding domain homologue ABED_1315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1315 PF00672 HAMP domain ABED_1318 PF05661 Protein of unknown function (DUF808) ABED_1321 PF12823 Domain of unknown function (DUF3817) ABED_1323 PF02568 Thiamine biosynthesis protein (ThiI) ABED_1323 PF02926 THUMP domain ABED_1327 PF01300 Telomere recombination ABED_1327 PF07503 HypF finger ABED_1327 PF17788 HypF Kae1-like domain ABED_1327 PF00708 Acylphosphatase ABED_1329 PF01750 Hydrogenase maturation protease ABED_1330 PF01292 Prokaryotic cytochrome b561 ABED_1331 PF00374 Nickel-dependent hydrogenase ABED_1332 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_1332 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ABED_1332 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABED_1336 PF01750 Hydrogenase maturation protease ABED_1337 PF01292 Prokaryotic cytochrome b561 ABED_1338 PF00374 Nickel-dependent hydrogenase ABED_1339 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ABED_1339 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABED_1339 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_1341 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ABED_1341 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_1343 PF11791 Aconitate B N-terminal domain ABED_1343 PF06434 Aconitate hydratase 2 N-terminus ABED_1343 PF00330 Aconitase family (aconitate hydratase) ABED_1345 PF00990 Diguanylate cyclase, GGDEF domain ABED_1345 PF01590 GAF domain ABED_1345 PF00360 Phytochrome region ABED_1345 PF00563 EAL domain ABED_1346 PF01709 Transcriptional regulator ABED_1347 PF04333 MlaA lipoprotein ABED_1350 PF03641 Possible lysine decarboxylase ABED_1351 PF13419 Haloacid dehalogenase-like hydrolase ABED_1352 PF08534 Redoxin ABED_1354 PF02600 Disulfide bond formation protein DsbB ABED_1358 PF00593 TonB dependent receptor ABED_1358 PF07715 TonB-dependent Receptor Plug Domain ABED_1359 PF00990 Diguanylate cyclase, GGDEF domain ABED_1359 PF08448 PAS fold ABED_1362 PF02254 TrkA-N domain ABED_1362 PF00999 Sodium/hydrogen exchanger family ABED_1364 PF00464 Serine hydroxymethyltransferase ABED_1365 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABED_1365 PF12833 Helix-turn-helix domain ABED_1365 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABED_1365 PF02805 Metal binding domain of Ada ABED_1369 PF00202 Aminotransferase class-III ABED_1370 PF03473 MOSC domain ABED_1371 PF04055 Radical SAM superfamily ABED_1372 PF03099 Biotin/lipoate A/B protein ligase family ABED_1372 PF10437 Bacterial lipoate protein ligase C-terminus ABED_1373 PF00456 Transketolase, thiamine diphosphate binding domain ABED_1373 PF17831 Pyruvate dehydrogenase E1 component middle domain ABED_1374 PF02817 e3 binding domain ABED_1374 PF00364 Biotin-requiring enzyme ABED_1374 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABED_1375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABED_1375 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_1376 PF07685 CobB/CobQ-like glutamine amidotransferase domain ABED_1377 PF07660 Secretin and TonB N terminus short domain ABED_1377 PF00593 TonB dependent receptor ABED_1377 PF07715 TonB-dependent Receptor Plug Domain ABED_1378 PF01263 Aldose 1-epimerase ABED_1379 PF00905 Penicillin binding protein transpeptidase domain ABED_1380 PF00270 DEAD/DEAH box helicase ABED_1380 PF00271 Helicase conserved C-terminal domain ABED_1381 PF18381 YcaO cyclodehydratase C-terminal domain ABED_1381 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ABED_1384 PF02203 Tar ligand binding domain homologue ABED_1384 PF00672 HAMP domain ABED_1384 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1385 PF00075 RNase H ABED_1386 PF07836 DmpG-like communication domain ABED_1386 PF00682 HMGL-like ABED_1389 PF00817 impB/mucB/samB family ABED_1389 PF11798 IMS family HHH motif ABED_1389 PF11799 impB/mucB/samB family C-terminal domain ABED_1390 PF03454 MoeA C-terminal region (domain IV) ABED_1390 PF03453 MoeA N-terminal region (domain I and II) ABED_1390 PF00994 Probable molybdopterin binding domain ABED_1391 PF00266 Aminotransferase class-V ABED_1392 PF02634 FdhD/NarQ family ABED_1394 PF13247 4Fe-4S dicluster domain ABED_1395 PF00384 Molybdopterin oxidoreductase ABED_1395 PF01568 Molydopterin dinucleotide binding domain ABED_1395 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABED_1396 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABED_1396 PF01568 Molydopterin dinucleotide binding domain ABED_1396 PF00384 Molybdopterin oxidoreductase ABED_1401 PF00512 His Kinase A (phospho-acceptor) domain ABED_1401 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1406 PF01841 Transglutaminase-like superfamily ABED_1408 PF13247 4Fe-4S dicluster domain ABED_1409 PF01568 Molydopterin dinucleotide binding domain ABED_1409 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABED_1409 PF00384 Molybdopterin oxidoreductase ABED_1411 PF02769 AIR synthase related protein, C-terminal domain ABED_1411 PF00586 AIR synthase related protein, N-terminal domain ABED_1421 PF03841 L-seryl-tRNA selenium transferase ABED_1422 PF09105 Elongation factor SelB, winged helix ABED_1422 PF09107 Elongation factor SelB, winged helix ABED_1422 PF03144 Elongation factor Tu domain 2 ABED_1422 PF00009 Elongation factor Tu GTP binding domain ABED_1422 PF09106 Elongation factor SelB, winged helix ABED_1427 PF00989 PAS fold ABED_1427 PF08447 PAS fold ABED_1427 PF00512 His Kinase A (phospho-acceptor) domain ABED_1427 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1428 PF03358 NADPH-dependent FMN reductase ABED_1430 PF01966 HD domain ABED_1431 PF00563 EAL domain ABED_1431 PF08448 PAS fold ABED_1431 PF00990 Diguanylate cyclase, GGDEF domain ABED_1432 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ABED_1432 PF01243 Pyridoxamine 5'-phosphate oxidase ABED_1433 PF00563 EAL domain ABED_1433 PF03707 Bacterial signalling protein N terminal repeat ABED_1433 PF00990 Diguanylate cyclase, GGDEF domain ABED_1434 PF00271 Helicase conserved C-terminal domain ABED_1434 PF00270 DEAD/DEAH box helicase ABED_1434 PF03880 DbpA RNA binding domain ABED_1438 PF00183 Hsp90 protein ABED_1439 PF00141 Peroxidase ABED_1443 PF04403 Paraquat-inducible protein A ABED_1446 PF08448 PAS fold ABED_1446 PF00563 EAL domain ABED_1446 PF00990 Diguanylate cyclase, GGDEF domain ABED_1450 PF04073 Aminoacyl-tRNA editing domain ABED_1452 PF08713 DNA alkylation repair enzyme ABED_1453 PF03992 Antibiotic biosynthesis monooxygenase ABED_1455 PF01965 DJ-1/PfpI family ABED_1456 PF05175 Methyltransferase small domain ABED_1456 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus ABED_1457 PF00593 TonB dependent receptor ABED_1457 PF07715 TonB-dependent Receptor Plug Domain ABED_1459 PF04542 Sigma-70 region 2 ABED_1459 PF08281 Sigma-70, region 4 ABED_1460 PF00491 Arginase family ABED_1461 PF00682 HMGL-like ABED_1461 PF08502 LeuA allosteric (dimerisation) domain ABED_1462 PF12833 Helix-turn-helix domain ABED_1462 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABED_1463 PF03352 Methyladenine glycosylase ABED_1463 PF00117 Glutamine amidotransferase class-I ABED_1463 PF00958 GMP synthase C terminal domain ABED_1463 PF13302 Acetyltransferase (GNAT) domain ABED_1463 PF13673 Acetyltransferase (GNAT) domain ABED_1464 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABED_1464 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABED_1465 PF00924 Mechanosensitive ion channel ABED_1466 PF01368 DHH family ABED_1466 PF02833 DHHA2 domain ABED_1469 PF10415 Fumarase C C-terminus ABED_1469 PF00206 Lyase ABED_1470 PF01048 Phosphorylase superfamily ABED_1471 PF00698 Acyl transferase domain ABED_1472 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABED_1475 PF04052 TolB amino-terminal domain ABED_1477 PF02472 Biopolymer transport protein ExbD/TolR ABED_1478 PF01618 MotA/TolQ/ExbB proton channel family ABED_1479 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ABED_1480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_1480 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABED_1481 PF00231 ATP synthase ABED_1482 PF00306 ATP synthase alpha/beta chain, C terminal domain ABED_1482 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABED_1482 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_1483 PF00213 ATP synthase delta (OSCP) subunit ABED_1484 PF00430 ATP synthase B/B' CF(0) ABED_1486 PF02195 ParB-like nuclease domain ABED_1486 PF17762 HTH domain found in ParB protein ABED_1487 PF13614 AAA domain ABED_1490 PF00551 Formyl transferase ABED_1490 PF02911 Formyl transferase, C-terminal domain ABED_1491 PF00696 Amino acid kinase family ABED_1492 PF01926 50S ribosome-binding GTPase ABED_1492 PF01018 GTP1/OBG ABED_1493 PF01016 Ribosomal L27 protein ABED_1494 PF00829 Ribosomal prokaryotic L21 protein ABED_1495 PF01807 CHC2 zinc finger ABED_1495 PF16730 DnaG-primase C-terminal, helicase-binding domain ABED_1495 PF08275 DNA primase catalytic core, N-terminal domain ABED_1495 PF13662 Toprim domain ABED_1497 PF00035 Double-stranded RNA binding motif ABED_1497 PF14622 Ribonuclease-III-like ABED_1498 PF01264 Chorismate synthase ABED_1500 PF01435 Peptidase family M48 ABED_1502 PF00300 Histidine phosphatase superfamily (branch 1) ABED_1504 PF01926 50S ribosome-binding GTPase ABED_1504 PF12631 MnmE helical domain ABED_1504 PF10396 GTP-binding protein TrmE N-terminus ABED_1506 PF14849 YidC periplasmic domain ABED_1506 PF02096 60Kd inner membrane protein ABED_1507 PF01809 Putative membrane protein insertion efficiency factor ABED_1508 PF00468 Ribosomal protein L34 ABED_1509 PF07724 AAA domain (Cdc48 subfamily) ABED_1509 PF00004 ATPase family associated with various cellular activities (AAA) ABED_1509 PF02861 Clp amino terminal domain, pathogenicity island component ABED_1509 PF17871 AAA lid domain ABED_1509 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_1510 PF01351 Ribonuclease HII ABED_1512 PF03976 Polyphosphate kinase 2 (PPK2) ABED_1514 PF01625 Peptide methionine sulfoxide reductase ABED_1515 PF01641 SelR domain ABED_1516 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABED_1519 PF00202 Aminotransferase class-III ABED_1519 PF06968 Biotin and Thiamin Synthesis associated domain ABED_1519 PF04055 Radical SAM superfamily ABED_1520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1520 PF00512 His Kinase A (phospho-acceptor) domain ABED_1521 PF02142 MGS-like domain ABED_1521 PF01808 AICARFT/IMPCHase bienzyme ABED_1522 PF02769 AIR synthase related protein, C-terminal domain ABED_1522 PF00586 AIR synthase related protein, N-terminal domain ABED_1522 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ABED_1524 PF01476 LysM domain ABED_1524 PF01551 Peptidase family M23 ABED_1524 PF08525 Opacity-associated protein A N-terminal motif ABED_1525 PF01227 GTP cyclohydrolase I ABED_1526 PF01544 CorA-like Mg2+ transporter protein ABED_1527 PF00482 Type II secretion system (T2SS), protein F ABED_1528 PF00437 Type II/IV secretion system protein ABED_1531 PF01926 50S ribosome-binding GTPase ABED_1531 PF07650 KH domain ABED_1533 PF01078 Magnesium chelatase, subunit ChlI ABED_1533 PF13335 Magnesium chelatase, subunit ChlI C-terminal ABED_1540 PF13361 UvrD-like helicase C-terminal domain ABED_1540 PF00580 UvrD/REP helicase N-terminal domain ABED_1542 PF13476 AAA domain ABED_1550 PF13335 Magnesium chelatase, subunit ChlI C-terminal ABED_1550 PF01078 Magnesium chelatase, subunit ChlI ABED_1551 PF00672 HAMP domain ABED_1551 PF02203 Tar ligand binding domain homologue ABED_1551 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1554 PF01327 Polypeptide deformylase ABED_1555 PF00574 Clp protease ABED_1556 PF05697 Bacterial trigger factor protein (TF) ABED_1556 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABED_1556 PF05698 Bacterial trigger factor protein (TF) C-terminus ABED_1557 PF03976 Polyphosphate kinase 2 (PPK2) ABED_1558 PF03976 Polyphosphate kinase 2 (PPK2) ABED_1559 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABED_1560 PF16653 Saccharopine dehydrogenase C-terminal domain ABED_1560 PF03435 Saccharopine dehydrogenase NADP binding domain ABED_1564 PF01053 Cys/Met metabolism PLP-dependent enzyme ABED_1565 PF01053 Cys/Met metabolism PLP-dependent enzyme ABED_1566 PF00486 Transcriptional regulatory protein, C terminal ABED_1566 PF00072 Response regulator receiver domain ABED_1567 PF00672 HAMP domain ABED_1567 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1567 PF02203 Tar ligand binding domain homologue ABED_1569 PF11849 Domain of unknown function (DUF3369) ABED_1570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1570 PF00672 HAMP domain ABED_1570 PF02203 Tar ligand binding domain homologue ABED_1571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1571 PF00512 His Kinase A (phospho-acceptor) domain ABED_1575 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABED_1577 PF00486 Transcriptional regulatory protein, C terminal ABED_1577 PF00072 Response regulator receiver domain ABED_1579 PF03824 High-affinity nickel-transport protein ABED_1582 PF06965 Na+/H+ antiporter 1 ABED_1583 PF03150 Di-haem cytochrome c peroxidase ABED_1584 PF04116 Fatty acid hydroxylase superfamily ABED_1589 PF00137 ATP synthase subunit C ABED_1593 PF08543 Phosphomethylpyrimidine kinase ABED_1594 PF00171 Aldehyde dehydrogenase family ABED_1597 PF13746 4Fe-4S dicluster domain ABED_1597 PF12801 4Fe-4S binding domain ABED_1597 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ABED_1598 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1598 PF00512 His Kinase A (phospho-acceptor) domain ABED_1599 PF00072 Response regulator receiver domain ABED_1599 PF12833 Helix-turn-helix domain ABED_1601 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABED_1601 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABED_1601 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABED_1601 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABED_1602 PF00795 Carbon-nitrogen hydrolase ABED_1606 PF00258 Flavodoxin ABED_1607 PF01475 Ferric uptake regulator family ABED_1609 PF04377 Arginine-tRNA-protein transferase, C terminus ABED_1609 PF04376 Arginine-tRNA-protein transferase, N terminus ABED_1610 PF00290 Tryptophan synthase alpha chain ABED_1611 PF02548 Ketopantoate hydroxymethyltransferase ABED_1612 PF17864 RuvB AAA lid domain ABED_1612 PF05491 RuvB C-terminal winged helix domain ABED_1612 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABED_1613 PF01594 AI-2E family transporter ABED_1615 PF04055 Radical SAM superfamily ABED_1616 PF01208 Uroporphyrinogen decarboxylase (URO-D) ABED_1618 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABED_1618 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABED_1619 PF00521 DNA gyrase/topoisomerase IV, subunit A ABED_1619 PF03989 DNA gyrase C-terminal domain, beta-propeller ABED_1621 PF01960 ArgJ family ABED_1623 PF00830 Ribosomal L28 family ABED_1625 PF08645 Polynucleotide kinase 3 phosphatase ABED_1626 PF01370 NAD dependent epimerase/dehydratase family ABED_1627 PF01467 Cytidylyltransferase-like ABED_1627 PF00294 pfkB family carbohydrate kinase ABED_1628 PF13580 SIS domain ABED_1629 PF00884 Sulfatase ABED_1630 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABED_1632 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABED_1633 PF00535 Glycosyl transferase family 2 ABED_1636 PF00534 Glycosyl transferases group 1 ABED_1636 PF13439 Glycosyltransferase Family 4 ABED_1640 PF03062 MBOAT, membrane-bound O-acyltransferase family ABED_1642 PF03062 MBOAT, membrane-bound O-acyltransferase family ABED_1644 PF03062 MBOAT, membrane-bound O-acyltransferase family ABED_1648 PF16363 GDP-mannose 4,6 dehydratase ABED_1649 PF04321 RmlD substrate binding domain ABED_1650 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ABED_1651 PF00483 Nucleotidyl transferase ABED_1655 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABED_1657 PF00037 4Fe-4S binding domain ABED_1659 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_1659 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABED_1660 PF00310 Glutamine amidotransferases class-II ABED_1660 PF04898 Glutamate synthase central domain ABED_1660 PF01493 GXGXG motif ABED_1660 PF01645 Conserved region in glutamate synthase ABED_1663 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1663 PF00672 HAMP domain ABED_1663 PF02203 Tar ligand binding domain homologue ABED_1664 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1664 PF00672 HAMP domain ABED_1664 PF02203 Tar ligand binding domain homologue ABED_1666 PF03958 Bacterial type II/III secretion system short domain ABED_1666 PF00263 Bacterial type II and III secretion system protein ABED_1667 PF01205 Uncharacterized protein family UPF0029 ABED_1667 PF09186 Domain of unknown function (DUF1949) ABED_1668 PF01728 FtsJ-like methyltransferase ABED_1668 PF01479 S4 domain ABED_1669 PF01687 Riboflavin kinase ABED_1669 PF06574 FAD synthetase ABED_1670 PF13649 Methyltransferase domain ABED_1671 PF00578 AhpC/TSA family ABED_1673 PF02913 FAD linked oxidases, C-terminal domain ABED_1673 PF01565 FAD binding domain ABED_1676 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABED_1678 PF00793 DAHP synthetase I family ABED_1679 PF00885 6,7-dimethyl-8-ribityllumazine synthase ABED_1680 PF01029 NusB family ABED_1681 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ABED_1682 PF00005 ABC transporter ABED_1684 PF04023 FeoA domain ABED_1685 PF07670 Nucleoside recognition ABED_1685 PF02421 Ferrous iron transport protein B ABED_1685 PF04023 FeoA domain ABED_1685 PF07664 Ferrous iron transport protein B C terminus ABED_1685 PF17910 FeoB cytosolic helical domain ABED_1690 PF00403 Heavy-metal-associated domain ABED_1691 PF01022 Bacterial regulatory protein, arsR family ABED_1692 PF00593 TonB dependent receptor ABED_1692 PF07715 TonB-dependent Receptor Plug Domain ABED_1694 PF00873 AcrB/AcrD/AcrF family ABED_1697 PF00313 'Cold-shock' DNA-binding domain ABED_1699 PF00072 Response regulator receiver domain ABED_1699 PF00486 Transcriptional regulatory protein, C terminal ABED_1700 PF00512 His Kinase A (phospho-acceptor) domain ABED_1700 PF00989 PAS fold ABED_1700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1701 PF03594 Benzoate membrane transport protein ABED_1704 PF05000 RNA polymerase Rpb1, domain 4 ABED_1704 PF04983 RNA polymerase Rpb1, domain 3 ABED_1704 PF04998 RNA polymerase Rpb1, domain 5 ABED_1704 PF04997 RNA polymerase Rpb1, domain 1 ABED_1704 PF00623 RNA polymerase Rpb1, domain 2 ABED_1705 PF10385 RNA polymerase beta subunit external 1 domain ABED_1705 PF04561 RNA polymerase Rpb2, domain 2 ABED_1705 PF00562 RNA polymerase Rpb2, domain 6 ABED_1705 PF04560 RNA polymerase Rpb2, domain 7 ABED_1705 PF04565 RNA polymerase Rpb2, domain 3 ABED_1705 PF04563 RNA polymerase beta subunit ABED_1706 PF16320 Ribosomal protein L7/L12 dimerisation domain ABED_1706 PF00542 Ribosomal protein L7/L12 C-terminal domain ABED_1707 PF00466 Ribosomal protein L10 ABED_1708 PF00687 Ribosomal protein L1p/L10e family ABED_1709 PF00298 Ribosomal protein L11, RNA binding domain ABED_1709 PF03946 Ribosomal protein L11, N-terminal domain ABED_1710 PF02357 Transcription termination factor nusG ABED_1712 PF00471 Ribosomal protein L33 ABED_1713 PF00009 Elongation factor Tu GTP binding domain ABED_1713 PF03144 Elongation factor Tu domain 2 ABED_1713 PF03143 Elongation factor Tu C-terminal domain ABED_1714 PF08245 Mur ligase middle domain ABED_1715 PF00953 Glycosyl transferase family 4 ABED_1715 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ABED_1716 PF01676 Metalloenzyme superfamily ABED_1716 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ABED_1717 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABED_1717 PF00005 ABC transporter ABED_1718 PF00905 Penicillin binding protein transpeptidase domain ABED_1718 PF00912 Transglycosylase ABED_1719 PF00120 Glutamine synthetase, catalytic domain ABED_1719 PF03951 Glutamine synthetase, beta-Grasp domain ABED_1721 PF02391 MoaE protein ABED_1723 PF02621 Menaquinone biosynthesis ABED_1724 PF02673 Bacitracin resistance protein BacA ABED_1725 PF04101 Glycosyltransferase family 28 C-terminal domain ABED_1725 PF03033 Glycosyltransferase family 28 N-terminal domain ABED_1726 PF01098 Cell cycle protein ABED_1727 PF03717 Penicillin-binding Protein dimerisation domain ABED_1727 PF00905 Penicillin binding protein transpeptidase domain ABED_1728 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABED_1730 PF17871 AAA lid domain ABED_1730 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_1730 PF00004 ATPase family associated with various cellular activities (AAA) ABED_1730 PF02861 Clp amino terminal domain, pathogenicity island component ABED_1730 PF07724 AAA domain (Cdc48 subfamily) ABED_1731 PF02617 ATP-dependent Clp protease adaptor protein ClpS ABED_1734 PF13193 AMP-binding enzyme C-terminal domain ABED_1734 PF00501 AMP-binding enzyme ABED_1735 PF01575 MaoC like domain ABED_1739 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1739 PF00672 HAMP domain ABED_1739 PF02203 Tar ligand binding domain homologue ABED_1740 PF02040 Arsenical pump membrane protein ABED_1744 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABED_1745 PF01613 Flavin reductase like domain ABED_1747 PF00771 FHIPEP family ABED_1748 PF00700 Bacterial flagellin C-terminal helical region ABED_1748 PF00669 Bacterial flagellin N-terminal helical region ABED_1749 PF18269 T3SS EscN ATPase C-terminal domain ABED_1749 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_1751 PF01312 FlhB HrpN YscU SpaS Family ABED_1754 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_1754 PF00460 Flagella basal body rod protein ABED_1755 PF02049 Flagellar hook-basal body complex protein FliE ABED_1757 PF10609 NUBPL iron-transfer P-loop NTPase ABED_1758 PF00448 SRP54-type protein, GTPase domain ABED_1762 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABED_1766 PF07196 Flagellin hook IN motif ABED_1766 PF07559 Flagellar basal body protein FlaE ABED_1766 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_1766 PF00460 Flagella basal body rod protein ABED_1769 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABED_1771 PF14842 FliG N-terminal domain ABED_1771 PF01706 FliG C-terminal domain ABED_1771 PF14841 FliG middle domain ABED_1772 PF08345 Flagellar M-ring protein C-terminal ABED_1772 PF01514 Secretory protein of YscJ/FliF family ABED_1773 PF00460 Flagella basal body rod protein ABED_1774 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_1774 PF00460 Flagella basal body rod protein ABED_1776 PF00072 Response regulator receiver domain ABED_1777 PF00460 Flagella basal body rod protein ABED_1777 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_1780 PF01782 RimM N-terminal domain ABED_1782 PF00886 Ribosomal protein S16 ABED_1783 PF02978 Signal peptide binding domain ABED_1783 PF02881 SRP54-type protein, helical bundle domain ABED_1783 PF00448 SRP54-type protein, GTPase domain ABED_1784 PF00849 RNA pseudouridylate synthase ABED_1785 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ABED_1785 PF00534 Glycosyl transferases group 1 ABED_1787 PF01784 NIF3 (NGG1p interacting factor 3) ABED_1788 PF02091 Glycyl-tRNA synthetase alpha subunit ABED_1790 PF00731 AIR carboxylase ABED_1793 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1793 PF17200 Single Cache domain 2 ABED_1793 PF00672 HAMP domain ABED_1794 PF13476 AAA domain ABED_1795 PF01513 ATP-NAD kinase ABED_1796 PF03144 Elongation factor Tu domain 2 ABED_1796 PF00009 Elongation factor Tu GTP binding domain ABED_1796 PF03764 Elongation factor G, domain IV ABED_1796 PF14492 Elongation Factor G, domain II ABED_1796 PF00679 Elongation factor G C-terminus ABED_1797 PF00177 Ribosomal protein S7p/S5e ABED_1798 PF00164 Ribosomal protein S12/S23 ABED_1800 PF07690 Major Facilitator Superfamily ABED_1801 PF00593 TonB dependent receptor ABED_1801 PF07715 TonB-dependent Receptor Plug Domain ABED_1804 PF00005 ABC transporter ABED_1805 PF00528 Binding-protein-dependent transport system inner membrane component ABED_1808 PF00117 Glutamine amidotransferase class-I ABED_1809 PF00440 Bacterial regulatory proteins, tetR family ABED_1810 PF00106 short chain dehydrogenase ABED_1811 PF12706 Beta-lactamase superfamily domain ABED_1812 PF13416 Bacterial extracellular solute-binding protein ABED_1813 PF00528 Binding-protein-dependent transport system inner membrane component ABED_1814 PF00005 ABC transporter ABED_1814 PF08402 TOBE domain ABED_1816 PF00593 TonB dependent receptor ABED_1816 PF07715 TonB-dependent Receptor Plug Domain ABED_1820 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABED_1820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABED_1824 PF09371 Tex-like protein N-terminal domain ABED_1824 PF00575 S1 RNA binding domain ABED_1824 PF17674 HHH domain ABED_1824 PF16921 Tex protein YqgF-like domain ABED_1826 PF01042 Endoribonuclease L-PSP ABED_1829 PF00155 Aminotransferase class I and II ABED_1831 PF09335 SNARE associated Golgi protein ABED_1832 PF01245 Ribosomal protein L19 ABED_1833 PF01746 tRNA (Guanine-1)-methyltransferase ABED_1835 PF08267 Cobalamin-independent synthase, N-terminal domain ABED_1835 PF01717 Cobalamin-independent synthase, Catalytic domain ABED_1836 PF13291 ACT domain ABED_1836 PF00291 Pyridoxal-phosphate dependent enzyme ABED_1837 PF00119 ATP synthase A chain ABED_1839 PF05538 Campylobacter major outer membrane protein ABED_1841 PF02660 Glycerol-3-phosphate acyltransferase ABED_1842 PF02445 Quinolinate synthetase A protein ABED_1843 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABED_1843 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABED_1846 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ABED_1848 PF08544 GHMP kinases C terminal ABED_1848 PF00288 GHMP kinases N terminal domain ABED_1850 PF04760 Translation initiation factor IF-2, N-terminal region ABED_1850 PF11987 Translation-initiation factor 2 ABED_1850 PF00009 Elongation factor Tu GTP binding domain ABED_1851 PF02033 Ribosome-binding factor A ABED_1852 PF02576 RimP N-terminal domain ABED_1853 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABED_1853 PF01872 RibD C-terminal domain ABED_1854 PF01132 Elongation factor P (EF-P) OB domain ABED_1854 PF08207 Elongation factor P (EF-P) KOW-like domain ABED_1854 PF09285 Elongation factor P, C-terminal ABED_1855 PF01842 ACT domain ABED_1855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABED_1855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABED_1856 PF00575 S1 RNA binding domain ABED_1857 PF02401 LytB protein ABED_1858 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABED_1859 PF03147 Ferredoxin-fold anticodon binding domain ABED_1859 PF01588 Putative tRNA binding domain ABED_1859 PF03484 tRNA synthetase B5 domain ABED_1859 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ABED_1860 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ABED_1860 PF01409 tRNA synthetases class II core domain (F) ABED_1861 PF01230 HIT domain ABED_1862 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABED_1863 PF00109 Beta-ketoacyl synthase, N-terminal domain ABED_1863 PF02801 Beta-ketoacyl synthase, C-terminal domain ABED_1864 PF00550 Phosphopantetheine attachment site ABED_1866 PF04055 Radical SAM superfamily ABED_1868 PF06508 Queuosine biosynthesis protein QueC ABED_1870 PF04452 RNA methyltransferase ABED_1872 PF00032 Cytochrome b(C-terminal)/b6/petD ABED_1872 PF00033 Cytochrome b/b6/petB ABED_1873 PF00355 Rieske [2Fe-2S] domain ABED_1874 PF00291 Pyridoxal-phosphate dependent enzyme ABED_1875 PF00696 Amino acid kinase family ABED_1876 PF00580 UvrD/REP helicase N-terminal domain ABED_1876 PF13361 UvrD-like helicase C-terminal domain ABED_1878 PF00472 RF-1 domain ABED_1878 PF03462 PCRF domain ABED_1879 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABED_1884 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABED_1884 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ABED_1887 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABED_1888 PF01668 SmpB protein ABED_1889 PF00288 GHMP kinases N terminal domain ABED_1890 PF01509 TruB family pseudouridylate synthase (N terminal domain) ABED_1891 PF13361 UvrD-like helicase C-terminal domain ABED_1891 PF00580 UvrD/REP helicase N-terminal domain ABED_1892 PF03466 LysR substrate binding domain ABED_1892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_1893 PF16199 Radical_SAM C-terminal domain ABED_1893 PF04055 Radical SAM superfamily ABED_1894 PF00156 Phosphoribosyl transferase domain ABED_1894 PF13537 Glutamine amidotransferase domain ABED_1895 PF05173 Dihydrodipicolinate reductase, C-terminus ABED_1895 PF01113 Dihydrodipicolinate reductase, N-terminus ABED_1896 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_1897 PF00085 Thioredoxin ABED_1898 PF01411 tRNA synthetases class II (A) ABED_1898 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABED_1898 PF02272 DHHA1 domain ABED_1903 PF00672 HAMP domain ABED_1903 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1903 PF00512 His Kinase A (phospho-acceptor) domain ABED_1904 PF00072 Response regulator receiver domain ABED_1904 PF00486 Transcriptional regulatory protein, C terminal ABED_1905 PF17820 PDZ domain ABED_1905 PF13180 PDZ domain ABED_1906 PF00920 Dehydratase family ABED_1909 PF09383 NIL domain ABED_1909 PF00005 ABC transporter ABED_1912 PF01142 tRNA pseudouridine synthase D (TruD) ABED_1913 PF15437 Plasminogen-binding protein pgbA C-terminal ABED_1915 PF03572 Peptidase family S41 ABED_1915 PF13180 PDZ domain ABED_1916 PF01259 SAICAR synthetase ABED_1917 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ABED_1920 PF01553 Acyltransferase ABED_1921 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ABED_1922 PF02416 mttA/Hcf106 family ABED_1923 PF02416 mttA/Hcf106 family ABED_1924 PF00750 tRNA synthetases class I (R) ABED_1924 PF03485 Arginyl tRNA synthetase N terminal domain ABED_1924 PF05746 DALR anticodon binding domain ABED_1926 PF01467 Cytidylyltransferase-like ABED_1927 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABED_1927 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABED_1928 PF00162 Phosphoglycerate kinase ABED_1929 PF00121 Triosephosphate isomerase ABED_1931 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABED_1931 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABED_1932 PF01817 Chorismate mutase type II ABED_1932 PF01842 ACT domain ABED_1932 PF00800 Prephenate dehydratase ABED_1933 PF00155 Aminotransferase class I and II ABED_1934 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ABED_1934 PF02779 Transketolase, pyrimidine binding domain ABED_1934 PF02780 Transketolase, C-terminal domain ABED_1935 PF00034 Cytochrome c ABED_1935 PF03150 Di-haem cytochrome c peroxidase ABED_1936 PF02545 Maf-like protein ABED_1939 PF00877 NlpC/P60 family ABED_1942 PF03167 Uracil DNA glycosylase superfamily ABED_1943 PF00171 Aldehyde dehydrogenase family ABED_1944 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABED_1944 PF00205 Thiamine pyrophosphate enzyme, central domain ABED_1944 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABED_1945 PF04011 LemA family ABED_1948 PF13419 Haloacid dehalogenase-like hydrolase ABED_1949 PF00210 Ferritin-like domain ABED_1952 PF07690 Major Facilitator Superfamily ABED_1954 PF00990 Diguanylate cyclase, GGDEF domain ABED_1954 PF00072 Response regulator receiver domain ABED_1955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_1955 PF00529 HlyD membrane-fusion protein of T1SS ABED_1956 PF00873 AcrB/AcrD/AcrF family ABED_1957 PF02321 Outer membrane efflux protein ABED_1958 PF07715 TonB-dependent Receptor Plug Domain ABED_1958 PF00593 TonB dependent receptor ABED_1960 PF04542 Sigma-70 region 2 ABED_1960 PF08281 Sigma-70, region 4 ABED_1964 PF01053 Cys/Met metabolism PLP-dependent enzyme ABED_1965 PF02082 Transcriptional regulator ABED_1966 PF00291 Pyridoxal-phosphate dependent enzyme ABED_1968 PF01507 Phosphoadenosine phosphosulfate reductase family ABED_1969 PF01507 Phosphoadenosine phosphosulfate reductase family ABED_1970 PF00009 Elongation factor Tu GTP binding domain ABED_1971 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABED_1971 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABED_1973 PF02347 Glycine cleavage system P-protein ABED_1980 PF00939 Sodium:sulfate symporter transmembrane region ABED_1982 PF11412 Disulphide bond corrector protein DsbC ABED_1982 PF02683 Cytochrome C biogenesis protein transmembrane region ABED_1983 PF08443 RimK-like ATP-grasp domain ABED_1983 PF18030 RimK PreATP-grasp domain ABED_1986 PF00563 EAL domain ABED_1986 PF00990 Diguanylate cyclase, GGDEF domain ABED_1986 PF10442 FIST C domain ABED_1986 PF08495 FIST N domain ABED_1987 PF02666 Phosphatidylserine decarboxylase ABED_1989 PF03562 MltA specific insert domain ABED_1989 PF06725 3D domain ABED_1990 PF00012 Hsp70 protein ABED_1991 PF01025 GrpE ABED_1992 PF01628 HrcA protein C terminal domain ABED_1994 PF01416 tRNA pseudouridine synthase ABED_1997 PF01255 Putative undecaprenyl diphosphate synthase ABED_1998 PF04127 DNA / pantothenate metabolism flavoprotein ABED_1998 PF02441 Flavoprotein ABED_1999 PF14602 Hexapeptide repeat of succinyl-transferase ABED_1999 PF12804 MobA-like NTP transferase domain ABED_2001 PF08148 DSHCT (NUC185) domain ABED_2001 PF00270 DEAD/DEAH box helicase ABED_2001 PF00271 Helicase conserved C-terminal domain ABED_2002 PF05958 tRNA (Uracil-5-)-methyltransferase ABED_2003 PF00293 NUDIX domain ABED_2006 PF06508 Queuosine biosynthesis protein QueC ABED_2014 PF00665 Integrase core domain ABED_2018 PF00589 Phage integrase family ABED_2018 PF02899 Phage integrase, N-terminal SAM-like domain ABED_2020 PF13932 GidA associated domain ABED_2020 PF01134 Glucose inhibited division protein A ABED_2021 PF00677 Lumazine binding domain ABED_2024 PF07724 AAA domain (Cdc48 subfamily) ABED_2024 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_2024 PF06689 ClpX C4-type zinc finger ABED_2025 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ABED_2025 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_2026 PF07977 FabA-like domain ABED_2027 PF02684 Lipid-A-disaccharide synthetase ABED_2028 PF02677 Epoxyqueuosine reductase QueH ABED_2030 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_2031 PF01261 Xylose isomerase-like TIM barrel ABED_2032 PF02321 Outer membrane efflux protein ABED_2033 PF00873 AcrB/AcrD/AcrF family ABED_2034 PF00529 HlyD membrane-fusion protein of T1SS ABED_2034 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_2036 PF07690 Major Facilitator Superfamily ABED_2037 PF00916 Sulfate permease family ABED_2037 PF01740 STAS domain ABED_2041 PF16450 Proteasomal ATPase OB C-terminal domain ABED_2041 PF00004 ATPase family associated with various cellular activities (AAA) ABED_2041 PF17758 Proteasomal ATPase OB N-terminal domain ABED_2042 PF08308 PEGA domain ABED_2042 PF03781 Sulfatase-modifying factor enzyme 1 ABED_2043 PF02621 Menaquinone biosynthesis ABED_2044 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ABED_2045 PF01131 DNA topoisomerase ABED_2045 PF01751 Toprim domain ABED_2045 PF13368 Topoisomerase C-terminal repeat ABED_2047 PF06968 Biotin and Thiamin Synthesis associated domain ABED_2047 PF04055 Radical SAM superfamily ABED_2050 PF00113 Enolase, C-terminal TIM barrel domain ABED_2050 PF03952 Enolase, N-terminal domain ABED_2051 PF00154 recA bacterial DNA recombination protein ABED_2053 PF02719 Polysaccharide biosynthesis protein ABED_2054 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABED_2055 PF02348 Cytidylyltransferase ABED_2056 PF03102 NeuB family ABED_2056 PF08666 SAF domain ABED_2060 PF02222 ATP-grasp domain ABED_2064 PF07196 Flagellin hook IN motif ABED_2064 PF00700 Bacterial flagellin C-terminal helical region ABED_2064 PF00669 Bacterial flagellin N-terminal helical region ABED_2065 PF00700 Bacterial flagellin C-terminal helical region ABED_2065 PF07196 Flagellin hook IN motif ABED_2065 PF00669 Bacterial flagellin N-terminal helical region ABED_2066 PF13746 4Fe-4S dicluster domain ABED_2066 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ABED_2066 PF12801 4Fe-4S binding domain ABED_2067 PF00117 Glutamine amidotransferase class-I ABED_2067 PF06418 CTP synthase N-terminus ABED_2068 PF02272 DHHA1 domain ABED_2068 PF01368 DHH family ABED_2068 PF17768 RecJ OB domain ABED_2073 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABED_2073 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABED_2073 PF14579 Helix-hairpin-helix motif ABED_2073 PF02811 PHP domain ABED_2074 PF01975 Survival protein SurE ABED_2077 PF01967 MoaC family ABED_2078 PF01165 Ribosomal protein S21 ABED_2079 PF01027 Inhibitor of apoptosis-promoting Bax1 ABED_2080 PF17792 ThiD2 family ABED_2080 PF02581 Thiamine monophosphate synthase ABED_2082 PF03840 Preprotein translocase SecG subunit ABED_2083 PF01765 Ribosome recycling factor ABED_2084 PF00156 Phosphoribosyl transferase domain ABED_2087 PF01544 CorA-like Mg2+ transporter protein ABED_2093 PF02796 Helix-turn-helix domain of resolvase ABED_2093 PF00239 Resolvase, N terminal domain ABED_2094 PF03883 Peroxide stress protein YaaA ABED_2097 PF03883 Peroxide stress protein YaaA ABED_2100 PF00149 Calcineurin-like phosphoesterase ABED_2101 PF00011 Hsp20/alpha crystallin family ABED_2102 PF01814 Hemerythrin HHE cation binding domain ABED_2103 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_2103 PF02743 Cache domain ABED_2103 PF00672 HAMP domain ABED_2104 PF00581 Rhodanese-like domain ABED_2104 PF00899 ThiF family ABED_2106 PF14403 Circularly permuted ATP-grasp type 2 ABED_2107 PF01841 Transglutaminase-like superfamily ABED_2107 PF08379 Bacterial transglutaminase-like N-terminal region ABED_2108 PF17850 CysA C-terminal regulatory domain ABED_2108 PF00005 ABC transporter ABED_2108 PF12857 TOBE-like domain ABED_2109 PF00528 Binding-protein-dependent transport system inner membrane component ABED_2110 PF00528 Binding-protein-dependent transport system inner membrane component ABED_2111 PF00291 Pyridoxal-phosphate dependent enzyme ABED_2112 PF10442 FIST C domain ABED_2112 PF00990 Diguanylate cyclase, GGDEF domain ABED_2112 PF08495 FIST N domain ABED_2112 PF00563 EAL domain ABED_2113 PF02597 ThiS family ABED_2115 PF00291 Pyridoxal-phosphate dependent enzyme ABED_2116 PF00528 Binding-protein-dependent transport system inner membrane component ABED_2117 PF00005 ABC transporter ABED_2119 PF00296 Luciferase-like monooxygenase ABED_2120 PF09084 NMT1/THI5 like ABED_2122 PF00005 ABC transporter ABED_2123 PF00528 Binding-protein-dependent transport system inner membrane component ABED_2124 PF00296 Luciferase-like monooxygenase ABED_2125 PF09084 NMT1/THI5 like ABED_2130 PF14403 Circularly permuted ATP-grasp type 2 ABED_2132 PF04143 Sulphur transport ABED_2133 PF01206 Sulfurtransferase TusA ABED_2137 PF00593 TonB dependent receptor ABED_2137 PF07715 TonB-dependent Receptor Plug Domain ABED_2140 PF00990 Diguanylate cyclase, GGDEF domain ABED_2140 PF08448 PAS fold ABED_2141 PF08019 Phosphoethanolamine transferase EptA/EptB ABED_2141 PF00884 Sulfatase ABED_2143 PF01219 Prokaryotic diacylglycerol kinase ABED_2149 PF00486 Transcriptional regulatory protein, C terminal ABED_2149 PF00072 Response regulator receiver domain ABED_2150 PF00512 His Kinase A (phospho-acceptor) domain ABED_2150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_2150 PF00672 HAMP domain ABED_2151 PF08241 Methyltransferase domain ABED_2152 PF12833 Helix-turn-helix domain ABED_2153 PF11849 Domain of unknown function (DUF3369) ABED_2154 PF02511 Thymidylate synthase complementing protein ABED_2157 PF00551 Formyl transferase ABED_2157 PF02911 Formyl transferase, C-terminal domain ABED_2158 PF02075 Crossover junction endodeoxyribonuclease RuvC