ABED_0001 PF00308 Bacterial dnaA protein ABED_0001 PF08299 Bacterial dnaA protein helix-turn-helix ABED_0001 PF11638 DnaA N-terminal domain ABED_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ABED_0002 PF02767 DNA polymerase III beta subunit, central domain ABED_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ABED_0003 PF00204 DNA gyrase B ABED_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ABED_0003 PF01751 Toprim domain ABED_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0004 PF13738 Pyridine nucleotide-disulphide oxidoreductase ABED_0005 PF14489 QueF-like protein ABED_0007 PF09335 ABED_0007 ABED_0008 PF13847 Methyltransferase domain ABED_0009 PF00005 ABC transporter ABED_0010 PF00528 Binding-protein-dependent transport system inner membrane component ABED_0011 PF03459 TOBE domain ABED_0012 PF13531 Bacterial extracellular solute-binding protein ABED_0013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_0013 PF03459 TOBE domain ABED_0014 PF13194 ABED_0014 ABED_0015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_0015 PF03466 LysR substrate binding domain ABED_0016 PF06779 ABED_0016 ABED_0018 PF00849 RNA pseudouridylate synthase ABED_0019 PF00206 Lyase ABED_0019 PF10397 Adenylosuccinate lyase C-terminus ABED_0020 PF00317 Ribonucleotide reductase, all-alpha domain ABED_0020 PF02867 Ribonucleotide reductase, barrel domain ABED_0020 PF03477 ATP cone domain ABED_0021 PF00268 Ribonucleotide reductase, small chain ABED_0022 PF04326 Divergent AAA domain ABED_0022 PF13749 ATP-dependent DNA helicase recG C-terminal ABED_0023 PF13279 Thioesterase-like superfamily ABED_0025 PF00691 OmpA family ABED_0027 PF00107 Zinc-binding dehydrogenase ABED_0028 PF01638 HxlR-like helix-turn-helix ABED_0029 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ABED_0029 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ABED_0030 PF02637 GatB domain ABED_0030 PF02934 GatB/GatE catalytic domain ABED_0032 PF01565 FAD binding domain ABED_0032 PF02754 ABED_0032 ABED_0032 PF02913 FAD linked oxidases, C-terminal domain ABED_0032 PF13183 4Fe-4S dicluster domain ABED_0033 PF02652 ABED_0033 ABED_0034 PF00072 Response regulator receiver domain ABED_0034 PF00486 Transcriptional regulatory protein, C terminal ABED_0035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0035 PF04392 ABC transporter substrate binding protein ABED_0035 PF08448 PAS fold ABED_0036 PF02589 Uncharacterised ACR, YkgG family COG1556 ABED_0037 PF02589 Uncharacterised ACR, YkgG family COG1556 ABED_0037 PF11870 ABED_0037 ABED_0037 PF13183 4Fe-4S dicluster domain ABED_0038 PF02754 ABED_0038 ABED_0039 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABED_0040 PF00364 Biotin-requiring enzyme ABED_0041 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain ABED_0041 PF02785 Biotin carboxylase C-terminal domain ABED_0041 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABED_0042 PF00270 DEAD/DEAH box helicase ABED_0042 PF00271 Helicase conserved C-terminal domain ABED_0043 PF01384 ABED_0043 ABED_0044 PF03547 ABED_0044 ABED_0045 PF00733 Asparagine synthase ABED_0045 PF13537 Glutamine amidotransferase domain ABED_0047 PF02562 PhoH-like protein ABED_0047 PF13638 PIN domain ABED_0048 PF03653 ABED_0048 ABED_0049 PF05496 Holliday junction DNA helicase ruvB N-terminus ABED_0049 PF12002 MgsA AAA+ ATPase C terminal ABED_0049 PF16193 ABED_0049 ABED_0050 PF00849 RNA pseudouridylate synthase ABED_0050 PF01479 S4 domain ABED_0051 PF00571 CBS domain ABED_0051 PF01380 SIS domain ABED_0052 PF00753 Metallo-beta-lactamase superfamily ABED_0052 PF07521 RNA-metabolising metallo-beta-lactamase ABED_0053 PF00398 Ribosomal RNA adenine dimethylase ABED_0054 PF00977 Histidine biosynthesis protein ABED_0055 PF04402 Protein of unknown function (DUF541) ABED_0056 PF01048 Phosphorylase superfamily ABED_0057 PF04055 Radical SAM superfamily ABED_0058 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABED_0059 PF00076 RNA recognition motif ABED_0060 PF00072 Response regulator receiver domain ABED_0060 PF00486 Transcriptional regulatory protein, C terminal ABED_0061 PF00512 His Kinase A (phospho-acceptor) domain ABED_0061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0062 PF13115 ABED_0062 ABED_0063 PF02321 Outer membrane efflux protein ABED_0064 PF16576 ABED_0064 ABED_0065 PF00873 AcrB/AcrD/AcrF family ABED_0066 PF04264 YceI-like domain ABED_0067 PF05670 ABED_0067 ABED_0067 PF05833 Fibronectin-binding protein A N-terminus (FbpA) ABED_0069 PF11853 ABED_0069 ABED_0071 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABED_0071 PF03129 Anticodon binding domain ABED_0071 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABED_0072 PF00707 Translation initiation factor IF-3, C-terminal domain ABED_0072 PF05198 Translation initiation factor IF-3, N-terminal domain ABED_0073 PF01632 Ribosomal protein L35 ABED_0074 PF00453 Ribosomal protein L20 ABED_0075 PF00581 Rhodanese-like domain ABED_0077 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_0078 PF12804 MobA-like NTP transferase domain ABED_0079 PF00330 Aconitase family (aconitate hydratase) ABED_0080 PF01252 ABED_0080 ABED_0081 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABED_0081 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABED_0081 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABED_0081 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABED_0082 PF01649 Ribosomal protein S20 ABED_0083 PF00472 RF-1 domain ABED_0083 PF03462 PCRF domain ABED_0084 PF07866 Protein of unknown function (DUF1653) ABED_0085 PF12849 PBP superfamily domain ABED_0086 PF00563 EAL domain ABED_0086 PF00571 CBS domain ABED_0086 PF00990 GGDEF domain ABED_0087 PF00528 Binding-protein-dependent transport system inner membrane component ABED_0088 PF00528 Binding-protein-dependent transport system inner membrane component ABED_0088 PF11812 ABED_0088 ABED_0089 PF00005 ABC transporter ABED_0090 PF01895 PhoU domain ABED_0091 PF06146 ABED_0091 ABED_0092 PF00072 Response regulator receiver domain ABED_0092 PF00486 Transcriptional regulatory protein, C terminal ABED_0093 PF00512 His Kinase A (phospho-acceptor) domain ABED_0093 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0093 PF16736 ABED_0093 ABED_0094 PF00572 Ribosomal protein L13 ABED_0095 PF00380 Ribosomal protein S9/S16 ABED_0096 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABED_0097 PF13419 Haloacid dehalogenase-like hydrolase ABED_0098 PF05145 ABED_0098 ABED_0100 PF02470 ABED_0100 ABED_0101 PF00005 ABC transporter ABED_0102 PF02405 ABED_0102 ABED_0103 PF02664 S-Ribosylhomocysteinase (LuxS) ABED_0105 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ABED_0106 PF00768 D-alanyl-D-alanine carboxypeptidase ABED_0108 PF07681 ABED_0108 ABED_0109 PF00809 Pterin binding enzyme ABED_0109 PF02310 B12 binding domain ABED_0109 PF02574 Homocysteine S-methyltransferase ABED_0109 PF02607 B12 binding domain ABED_0109 PF02965 Vitamin B12 dependent methionine synthase, activation domain ABED_0110 PF01063 Aminotransferase class IV ABED_0111 PF01145 SPFH domain / Band 7 family ABED_0113 PF01502 Phosphoribosyl-AMP cyclohydrolase ABED_0113 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ABED_0115 PF10609 ParA/MinD ATPase like ABED_0116 PF01964 ThiC family ABED_0117 PF08668 HDOD domain ABED_0118 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ABED_0118 PF02542 YgbB family ABED_0119 PF00072 Response regulator receiver domain ABED_0120 PF04608 Phosphatidylglycerophosphatase A ABED_0121 PF00117 Glutamine amidotransferase class-I ABED_0121 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ABED_0122 PF04368 ABED_0122 ABED_0123 PF00709 Adenylosuccinate synthetase ABED_0124 PF13393 Histidyl-tRNA synthetase ABED_0125 PF00266 Aminotransferase class-V ABED_0126 PF04264 YceI-like domain ABED_0127 PF01047 MarR family ABED_0128 PF04264 YceI-like domain ABED_0129 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ABED_0130 PF03358 NADPH-dependent FMN reductase ABED_0131 PF02678 Pirin ABED_0132 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABED_0132 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABED_0133 PF00586 AIR synthase related protein, N-terminal domain ABED_0133 PF02769 AIR synthase related protein, C-terminal domain ABED_0134 PF01564 Spermine/spermidine synthase ABED_0135 PF01121 Dephospho-CoA kinase ABED_0136 PF01678 Diaminopimelate epimerase ABED_0137 PF02222 ATP-grasp domain ABED_0138 PF00583 Acetyltransferase (GNAT) family ABED_0139 PF08238 Sel1 repeat ABED_0140 PF02705 ABED_0140 ABED_0141 PF01040 UbiA prenyltransferase family ABED_0143 PF01715 IPP transferase ABED_0144 PF01197 Ribosomal protein L31 ABED_0145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABED_0146 PF00588 SpoU rRNA Methylase family ABED_0146 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABED_0148 PF00155 Aminotransferase class I and II ABED_0149 PF00742 Homoserine dehydrogenase ABED_0149 PF01842 ACT domain ABED_0149 PF03447 Homoserine dehydrogenase, NAD binding domain ABED_0150 PF05818 ABED_0150 ABED_0151 PF01148 Cytidylyltransferase family ABED_0152 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABED_0152 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal ABED_0152 PF13288 DXP reductoisomerase C-terminal domain ABED_0154 PF06821 Serine hydrolase ABED_0155 PF00814 Glycoprotease family ABED_0156 PF01253 Translation initiation factor SUI1 ABED_0157 PF01256 Carbohydrate kinase ABED_0157 PF03853 YjeF-related protein N-terminus ABED_0158 PF03091 CutA1 divalent ion tolerance protein ABED_0159 PF05690 Thiazole biosynthesis protein ThiG ABED_0160 PF00364 Biotin-requiring enzyme ABED_0160 PF00682 HMGL-like ABED_0160 PF02436 Conserved carboxylase domain ABED_0162 PF06445 GyrI-like small molecule binding domain ABED_0162 PF12833 Helix-turn-helix domain ABED_0163 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0163 PF12729 ABED_0163 ABED_0164 PF00271 Helicase conserved C-terminal domain ABED_0164 PF04851 Type III restriction enzyme, res subunit ABED_0164 PF11907 ABED_0164 ABED_0164 PF13091 PLD-like domain ABED_0165 PF07690 Major Facilitator Superfamily ABED_0167 PF00456 Transketolase, thiamine diphosphate binding domain ABED_0167 PF02779 Transketolase, pyrimidine binding domain ABED_0167 PF02780 Transketolase, C-terminal domain ABED_0168 PF03788 ABED_0168 ABED_0169 PF04172 ABED_0169 ABED_0170 PF06094 AIG2-like family ABED_0171 PF03994 ABED_0171 ABED_0172 PF00375 Sodium:dicarboxylate symporter family ABED_0173 PF13411 MerR HTH family regulatory protein ABED_0175 PF01066 CDP-alcohol phosphatidyltransferase ABED_0176 PF01148 Cytidylyltransferase family ABED_0177 PF01553 Acyltransferase ABED_0178 PF00501 AMP-binding enzyme ABED_0178 PF01553 Acyltransferase ABED_0178 PF07690 Major Facilitator Superfamily ABED_0179 PF01966 HD domain ABED_0179 PF08335 GlnD PII-uridylyltransferase ABED_0180 PF02954 Bacterial regulatory protein, Fis family ABED_0182 PF12796 Ankyrin repeats (3 copies) ABED_0183 PF00543 Nitrogen regulatory protein P-II ABED_0184 PF01979 Amidohydrolase family ABED_0185 PF01052 Surface presentation of antigens (SPOA) ABED_0185 PF02154 Flagellar motor switch protein FliM ABED_0186 PF02119 ABED_0186 ABED_0188 PF01313 ABED_0188 ABED_0191 PF03748 ABED_0191 ABED_0193 PF02107 ABED_0193 ABED_0194 PF00460 Flagella basal body rod protein ABED_0194 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_0195 PF02465 ABED_0195 ABED_0195 PF07195 ABED_0195 ABED_0196 PF02561 Flagellar protein FliS ABED_0198 PF01171 PP-loop family ABED_0199 PF00919 Uncharacterized protein family UPF0004 ABED_0199 PF04055 Radical SAM superfamily ABED_0200 PF02569 Pantoate-beta-alanine ligase ABED_0201 PF00528 Binding-protein-dependent transport system inner membrane component ABED_0202 PF01648 4'-phosphopantetheinyl transferase superfamily ABED_0203 PF03616 ABED_0203 ABED_0204 PF03652 Uncharacterised protein family (UPF0081) ABED_0205 PF02219 Methylenetetrahydrofolate reductase ABED_0206 PF00702 haloacid dehalogenase-like hydrolase ABED_0207 PF00923 Transaldolase ABED_0208 PF01474 Class-II DAHP synthetase family ABED_0209 PF03502 Nucleoside-specific channel-forming protein, Tsx ABED_0210 PF03960 ArsC family ABED_0211 PF02686 Glu-tRNAGln amidotransferase C subunit ABED_0212 PF01702 Queuine tRNA-ribosyltransferase ABED_0213 PF02080 TrkA-C domain ABED_0214 PF00155 Aminotransferase class I and II ABED_0216 PF01225 Mur ligase family, catalytic domain ABED_0216 PF02875 Mur ligase family, glutamate ligase domain ABED_0216 PF08245 Mur ligase middle domain ABED_0217 PF02481 DNA recombination-mediator protein A ABED_0218 PF04748 Divergent polysaccharide deacetylase ABED_0219 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ABED_0219 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain ABED_0220 PF00773 RNB domain ABED_0221 PF02623 FliW protein ABED_0222 PF06144 DNA polymerase III, delta subunit ABED_0223 PF01250 Ribosomal protein S6 ABED_0224 PF00436 Single-strand binding protein family ABED_0225 PF01084 Ribosomal protein S18 ABED_0227 PF01406 tRNA synthetases class I (C) catalytic domain ABED_0227 PF09190 DALR domain ABED_0228 PF08529 NusA N-terminal domain ABED_0228 PF13184 NusA-like KH domain ABED_0230 PF00919 Uncharacterized protein family UPF0004 ABED_0230 PF01938 TRAM domain ABED_0230 PF04055 Radical SAM superfamily ABED_0231 PF04028 ABED_0231 ABED_0234 PF04055 Radical SAM superfamily ABED_0236 PF00484 Carbonic anhydrase ABED_0237 PF00155 Aminotransferase class I and II ABED_0238 PF02021 Uncharacterised protein family UPF0102 ABED_0239 PF02597 ThiS family ABED_0240 PF00691 OmpA family ABED_0240 PF05433 ABED_0240 ABED_0241 PF00224 Pyruvate kinase, barrel domain ABED_0241 PF02887 Pyruvate kinase, alpha/beta domain ABED_0242 PF00202 Aminotransferase class-III ABED_0243 PF06934 ABED_0243 ABED_0244 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABED_0244 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABED_0245 PF00425 chorismate binding enzyme ABED_0246 PF00857 Isochorismatase family ABED_0247 PF00072 Response regulator receiver domain ABED_0247 PF00486 Transcriptional regulatory protein, C terminal ABED_0248 PF01063 Aminotransferase class IV ABED_0249 PF03831 PhnA protein ABED_0250 PF01863 Protein of unknown function DUF45 ABED_0251 PF01925 ABED_0251 ABED_0252 PF04982 ABED_0252 ABED_0253 PF03734 L,D-transpeptidase catalytic domain ABED_0254 PF01618 ABED_0254 ABED_0255 PF00691 OmpA family ABED_0257 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABED_0257 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABED_0259 PF13714 Phosphoenolpyruvate phosphomutase ABED_0260 PF00285 Citrate synthase ABED_0261 PF00330 Aconitase family (aconitate hydratase) ABED_0261 PF00694 Aconitase C-terminal domain ABED_0262 PF04303 PrpF protein ABED_0263 PF12870 Lumazine-binding domain ABED_0264 PF00857 Isochorismatase family ABED_0265 PF13687 ABED_0265 ABED_0266 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ABED_0266 PF03900 Porphobilinogen deaminase, C-terminal domain ABED_0267 PF13462 Thioredoxin ABED_0268 PF13177 DNA polymerase III, delta subunit ABED_0269 PF01177 Asp/Glu/Hydantoin racemase ABED_0270 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABED_0270 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABED_0271 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_0271 PF07497 Rho termination factor, RNA-binding domain ABED_0271 PF07498 Rho termination factor, N-terminal domain ABED_0272 PF00578 AhpC/TSA family ABED_0272 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABED_0273 PF12838 4Fe-4S dicluster domain ABED_0274 PF00334 Nucleoside diphosphate kinase ABED_0276 PF01783 Ribosomal L32p protein family ABED_0277 PF02504 Fatty acid synthesis protein ABED_0278 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABED_0278 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABED_0280 PF00350 Dynamin family ABED_0281 PF00350 Dynamin family ABED_0282 PF13085 2Fe-2S iron-sulfur cluster binding domain ABED_0282 PF13183 4Fe-4S dicluster domain ABED_0283 PF00890 FAD binding domain ABED_0283 PF02910 Fumarate reductase flavoprotein C-term ABED_0284 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABED_0285 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains ABED_0286 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains ABED_0287 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains ABED_0287 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABED_0288 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABED_0289 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABED_0290 PF13187 4Fe-4S dicluster domain ABED_0291 PF00146 NADH dehydrogenase ABED_0292 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABED_0292 PF13510 2Fe-2S iron-sulfur cluster binding domain ABED_0293 PF00285 Citrate synthase ABED_0294 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ABED_0294 PF10531 SLBB domain ABED_0294 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ABED_0295 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin ABED_0296 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ABED_0296 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ABED_0297 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_0298 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABED_0299 PF00155 Aminotransferase class I and II ABED_0300 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ABED_0301 PF12821 ABED_0301 ABED_0302 PF06738 ABED_0302 ABED_0304 PF03309 Type III pantothenate kinase ABED_0305 PF01634 ATP phosphoribosyltransferase ABED_0306 PF13489 Methyltransferase domain ABED_0307 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0307 PF17200 ABED_0307 ABED_0308 PF02663 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ABED_0309 PF00579 tRNA synthetases class I (W and Y) ABED_0310 PF00593 TonB dependent receptor ABED_0310 PF07715 TonB-dependent Receptor Plug Domain ABED_0311 PF07786 ABED_0311 ABED_0312 PF07690 Major Facilitator Superfamily ABED_0313 PF00891 O-methyltransferase ABED_0313 PF16864 ABED_0313 ABED_0314 PF00593 TonB dependent receptor ABED_0314 PF07715 TonB-dependent Receptor Plug Domain ABED_0315 PF12833 Helix-turn-helix domain ABED_0316 PF02659 ABED_0316 ABED_0317 PF00593 TonB dependent receptor ABED_0317 PF07715 TonB-dependent Receptor Plug Domain ABED_0318 PF02583 Metal-sensitive transcriptional repressor ABED_0319 PF01545 Cation efflux family ABED_0320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABED_0320 PF02403 Seryl-tRNA synthetase N-terminal domain ABED_0321 PF01578 ABED_0321 ABED_0321 PF05140 ABED_0321 ABED_0322 PF02335 Cytochrome c552 ABED_0323 PF03264 NapC/NirT cytochrome c family, N-terminal region ABED_0325 PF00563 EAL domain ABED_0325 PF00990 GGDEF domain ABED_0325 PF08448 PAS fold ABED_0326 PF08447 PAS fold ABED_0327 PF03927 NapD protein ABED_0329 PF00037 4Fe-4S binding domain ABED_0330 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ABED_0331 PF12801 ABED_0331 ABED_0331 PF13237 4Fe-4S dicluster domain ABED_0332 PF12838 4Fe-4S dicluster domain ABED_0333 PF00384 Molybdopterin oxidoreductase ABED_0333 PF01568 Molydopterin dinucleotide binding domain ABED_0333 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABED_0333 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABED_0334 PF03480 Bacterial extracellular solute-binding protein, family 7 ABED_0335 PF04290 ABED_0335 ABED_0336 PF06808 ABED_0336 ABED_0337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0337 PF17200 ABED_0337 ABED_0338 PF00072 Response regulator receiver domain ABED_0338 PF00486 Transcriptional regulatory protein, C terminal ABED_0339 PF03737 Demethylmenaquinone methyltransferase ABED_0340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABED_0341 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ABED_0342 PF00027 Cyclic nucleotide-binding domain ABED_0342 PF13545 Crp-like helix-turn-helix domain ABED_0343 PF00591 Glycosyl transferase family, a/b domain ABED_0343 PF02885 Glycosyl transferase family, helical bundle domain ABED_0344 PF04055 Radical SAM superfamily ABED_0344 PF06463 Molybdenum Cofactor Synthesis C ABED_0344 PF13353 4Fe-4S single cluster domain ABED_0345 PF00312 Ribosomal protein S15 ABED_0346 PF02082 Transcriptional regulator ABED_0348 PF13380 CoA binding domain ABED_0349 PF00512 His Kinase A (phospho-acceptor) domain ABED_0349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0350 PF00072 Response regulator receiver domain ABED_0350 PF00486 Transcriptional regulatory protein, C terminal ABED_0351 PF13616 PPIC-type PPIASE domain ABED_0352 PF01116 Fructose-bisphosphate aldolase class-II ABED_0353 PF00171 Aldehyde dehydrogenase family ABED_0354 PF05610 ABED_0354 ABED_0355 PF02472 Biopolymer transport protein ExbD/TolR ABED_0356 PF01618 ABED_0356 ABED_0358 PF01202 Shikimate kinase ABED_0359 PF00815 Histidinol dehydrogenase ABED_0360 PF09442 Domain of unknown function (DUF2018) ABED_0361 PF00348 Polyprenyl synthetase ABED_0362 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ABED_0362 PF01488 Shikimate / quinate 5-dehydrogenase ABED_0362 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ABED_0363 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABED_0363 PF03129 Anticodon binding domain ABED_0363 PF04073 Aminoacyl-tRNA editing domain ABED_0364 PF00924 Mechanosensitive ion channel ABED_0365 PF01743 Poly A polymerase head domain ABED_0365 PF12627 Probable RNA and SrmB- binding site of polymerase A ABED_0366 PF11220 ABED_0366 ABED_0367 PF13387 ABED_0367 ABED_0369 PF02699 Preprotein translocase subunit ABED_0370 PF02355 Protein export membrane protein ABED_0371 PF02355 Protein export membrane protein ABED_0371 PF07549 SecD/SecF GG Motif ABED_0374 PF00691 OmpA family ABED_0374 PF13677 ABED_0374 ABED_0375 PF01618 ABED_0375 ABED_0377 PF00133 tRNA synthetases class I (I, L, M and V) ABED_0377 PF09334 tRNA synthetases class I (M) ABED_0377 PF13603 Leucyl-tRNA synthetase, Domain 2 ABED_0378 PF04390 Lipopolysaccharide-assembly ABED_0379 PF08245 Mur ligase middle domain ABED_0380 PF00271 Helicase conserved C-terminal domain ABED_0380 PF04851 Type III restriction enzyme, res subunit ABED_0381 PF01553 Acyltransferase ABED_0381 PF13444 Acetyltransferase (GNAT) domain ABED_0385 PF00270 DEAD/DEAH box helicase ABED_0385 PF00271 Helicase conserved C-terminal domain ABED_0385 PF02559 CarD-like/TRCF domain ABED_0385 PF03461 TRCF domain ABED_0386 PF13673 Acetyltransferase (GNAT) domain ABED_0387 PF03372 Endonuclease/Exonuclease/phosphatase family ABED_0388 PF07813 LTXXQ motif family protein ABED_0389 PF00072 Response regulator receiver domain ABED_0389 PF00486 Transcriptional regulatory protein, C terminal ABED_0390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0391 PF03486 HI0933-like protein ABED_0392 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0392 PF13682 Chemoreceptor zinc-binding domain ABED_0393 PF00072 Response regulator receiver domain ABED_0394 PF08447 PAS fold ABED_0395 PF00512 His Kinase A (phospho-acceptor) domain ABED_0395 PF00989 PAS fold ABED_0395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0395 PF13426 PAS domain ABED_0396 PF13277 YmdB-like protein ABED_0399 PF01209 ubiE/COQ5 methyltransferase family ABED_0400 PF02601 ABED_0400 ABED_0400 PF13742 ABED_0400 ABED_0401 PF01584 CheW-like domain ABED_0402 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABED_0403 PF02261 Aspartate decarboxylase ABED_0404 PF02575 YbaB/EbfC DNA-binding family ABED_0405 PF00348 Polyprenyl synthetase ABED_0406 PF00166 Chaperonin 10 Kd subunit ABED_0407 PF00118 TCP-1/cpn60 chaperonin family ABED_0408 PF00512 His Kinase A (phospho-acceptor) domain ABED_0408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0409 PF00072 Response regulator receiver domain ABED_0409 PF00486 Transcriptional regulatory protein, C terminal ABED_0410 PF00149 Calcineurin-like phosphoesterase ABED_0412 PF04264 YceI-like domain ABED_0415 PF00005 ABC transporter ABED_0416 PF02687 ABED_0416 ABED_0416 PF12704 MacB-like periplasmic core domain ABED_0418 PF00459 Inositol monophosphatase family ABED_0419 PF01380 SIS domain ABED_0419 PF13522 Glutamine amidotransferase domain ABED_0420 PF00438 S-adenosylmethionine synthetase, N-terminal domain ABED_0420 PF02772 S-adenosylmethionine synthetase, central domain ABED_0420 PF02773 S-adenosylmethionine synthetase, C-terminal domain ABED_0421 PF01039 Carboxyl transferase domain ABED_0422 PF02581 Thiamine monophosphate synthase/TENI ABED_0423 PF02590 Predicted SPOUT methyltransferase ABED_0425 PF01207 Dihydrouridine synthase (Dus) ABED_0426 PF06325 Ribosomal protein L11 methyltransferase (PrmA) ABED_0427 PF00004 ATPase family associated with various cellular activities (AAA) ABED_0427 PF01434 Peptidase family M41 ABED_0427 PF06480 FtsH Extracellular ABED_0428 PF00072 Response regulator receiver domain ABED_0428 PF01966 HD domain ABED_0428 PF13426 PAS domain ABED_0429 PF00072 Response regulator receiver domain ABED_0430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0431 PF00682 HMGL-like ABED_0431 PF08502 LeuA allosteric (dimerisation) domain ABED_0432 PF00085 Thioredoxin ABED_0433 PF14376 ABED_0433 ABED_0434 PF00488 MutS domain V ABED_0434 PF01624 MutS domain I ABED_0434 PF05192 MutS domain III ABED_0435 PF00873 AcrB/AcrD/AcrF family ABED_0436 PF16576 ABED_0436 ABED_0437 PF02321 Outer membrane efflux protein ABED_0438 PF00440 Bacterial regulatory proteins, tetR family ABED_0440 PF09098 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding ABED_0440 PF09099 Quinohemoprotein amine dehydrogenase, alpha subunit domain III ABED_0440 PF09100 Quinohemoprotein amine dehydrogenase, alpha subunit domain IV ABED_0440 PF14930 Quinohemoprotein amine dehydrogenase, alpha subunit domain II ABED_0441 PF04055 Radical SAM superfamily ABED_0441 PF13353 4Fe-4S single cluster domain ABED_0442 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit ABED_0444 PF00005 ABC transporter ABED_0444 PF00664 ABC transporter transmembrane region ABED_0445 PF00082 Subtilase family ABED_0446 PF04820 Tryptophan halogenase ABED_0447 PF00990 GGDEF domain ABED_0448 PF00977 Histidine biosynthesis protein ABED_0449 PF01370 NAD dependent epimerase/dehydratase family ABED_0449 PF08338 Domain of unknown function (DUF1731) ABED_0450 PF00117 Glutamine amidotransferase class-I ABED_0451 PF00156 Phosphoribosyl transferase domain ABED_0452 PF09603 ABED_0452 ABED_0454 PF00009 Elongation factor Tu GTP binding domain ABED_0454 PF00679 Elongation factor G C-terminus ABED_0454 PF03144 Elongation factor Tu domain 2 ABED_0454 PF06421 GTP-binding protein LepA C-terminus ABED_0455 PF02583 Metal-sensitive transcriptional repressor ABED_0456 PF00122 E1-E2 ATPase ABED_0456 PF00403 Heavy-metal-associated domain ABED_0456 PF00702 haloacid dehalogenase-like hydrolase ABED_0457 PF00691 OmpA family ABED_0457 PF13505 Outer membrane protein beta-barrel domain ABED_0458 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABED_0458 PF14572 Phosphoribosyl synthetase-associated domain ABED_0460 PF03054 tRNA methyl transferase ABED_0461 PF03054 tRNA methyl transferase ABED_0462 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ABED_0463 PF00557 Metallopeptidase family M24 ABED_0463 PF01321 Creatinase/Prolidase N-terminal domain ABED_0464 PF01220 Dehydroquinase class II ABED_0465 PF01979 Amidohydrolase family ABED_0466 PF01343 Peptidase family S49 ABED_0467 PF00871 Acetokinase family ABED_0468 PF01515 Phosphate acetyl/butaryl transferase ABED_0469 PF00871 Acetokinase family ABED_0470 PF01545 Cation efflux family ABED_0471 PF00871 Acetokinase family ABED_0472 PF00929 Exonuclease ABED_0473 PF00027 Cyclic nucleotide-binding domain ABED_0473 PF00571 CBS domain ABED_0473 PF03445 ABED_0473 ABED_0473 PF10335 ABED_0473 ABED_0474 PF00474 Sodium:solute symporter family ABED_0475 PF04341 ABED_0475 ABED_0476 PF00474 Sodium:solute symporter family ABED_0477 PF04341 ABED_0477 ABED_0478 PF00929 Exonuclease ABED_0479 PF00027 Cyclic nucleotide-binding domain ABED_0479 PF00571 CBS domain ABED_0479 PF03445 ABED_0479 ABED_0479 PF10335 ABED_0479 ABED_0480 PF00474 Sodium:solute symporter family ABED_0481 PF13937 ABED_0481 ABED_0482 PF00072 Response regulator receiver domain ABED_0482 PF00486 Transcriptional regulatory protein, C terminal ABED_0483 PF00512 His Kinase A (phospho-acceptor) domain ABED_0483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0483 PF17200 ABED_0483 ABED_0484 PF02464 Competence-damaged protein ABED_0485 PF06039 ABED_0485 ABED_0486 PF00133 tRNA synthetases class I (I, L, M and V) ABED_0486 PF08264 Anticodon-binding domain of tRNA ABED_0487 PF01106 NifU-like domain ABED_0489 PF02875 Mur ligase family, glutamate ligase domain ABED_0489 PF08245 Mur ligase middle domain ABED_0490 PF05860 haemagglutination activity domain ABED_0490 PF07581 ABED_0490 ABED_0491 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ABED_0491 PF08479 POTRA domain, ShlB-type ABED_0492 PF05860 haemagglutination activity domain ABED_0492 PF07581 ABED_0492 ABED_0493 PF00072 Response regulator receiver domain ABED_0493 PF00486 Transcriptional regulatory protein, C terminal ABED_0494 PF07568 ABED_0494 ABED_0494 PF07695 ABED_0494 ABED_0494 PF07696 7TMR-DISM extracellular 2 ABED_0496 PF03595 Voltage-dependent anion channel ABED_0497 PF00248 Aldo/keto reductase family ABED_0498 PF01384 ABED_0498 ABED_0500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0500 PF13682 Chemoreceptor zinc-binding domain ABED_0500 PF14827 Sensory domain of two-component sensor kinase ABED_0502 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0502 PF12729 ABED_0502 ABED_0503 PF03061 Thioesterase superfamily ABED_0504 PF13091 PLD-like domain ABED_0505 PF01435 Peptidase family M48 ABED_0505 PF16491 ABED_0505 ABED_0506 PF02646 ABED_0506 ABED_0507 PF00892 EamA-like transporter family ABED_0508 PF00994 Probable molybdopterin binding domain ABED_0508 PF03453 MoeA N-terminal region (domain I and II) ABED_0510 PF01171 PP-loop family ABED_0511 PF04463 ABED_0511 ABED_0513 PF12118 ABED_0513 ABED_0514 PF00318 Ribosomal protein S2 ABED_0515 PF00889 Elongation factor TS ABED_0516 PF00005 ABC transporter ABED_0518 PF00625 Guanylate kinase ABED_0519 PF00072 Response regulator receiver domain ABED_0519 PF00563 EAL domain ABED_0519 PF00990 GGDEF domain ABED_0520 PF00122 E1-E2 ATPase ABED_0520 PF00403 Heavy-metal-associated domain ABED_0520 PF00702 haloacid dehalogenase-like hydrolase ABED_0520 PF12156 ABED_0520 ABED_0521 PF03597 ABED_0521 ABED_0522 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABED_0523 PF00005 ABC transporter ABED_0524 PF00762 Ferrochelatase ABED_0525 PF02421 Ferrous iron transport protein B ABED_0525 PF07664 ABED_0525 ABED_0525 PF07670 Nucleoside recognition ABED_0526 PF04023 FeoA domain ABED_0527 PF02698 DUF218 domain ABED_0528 PF00005 ABC transporter ABED_0529 PF00950 ABED_0529 ABED_0530 PF13509 S1 domain ABED_0531 PF08534 Redoxin ABED_0532 PF08238 Sel1 repeat ABED_0533 PF01758 Sodium Bile acid symporter family ABED_0534 PF05940 ABED_0534 ABED_0535 PF13245 Part of AAA domain ABED_0535 PF13361 UvrD-like helicase C-terminal domain ABED_0536 PF00999 Sodium/hydrogen exchanger family ABED_0537 PF00133 tRNA synthetases class I (I, L, M and V) ABED_0537 PF08264 Anticodon-binding domain of tRNA ABED_0537 PF10458 Valyl tRNA synthetase tRNA binding arm ABED_0538 PF09962 ABED_0538 ABED_0539 PF16448 ABED_0539 ABED_0540 PF07690 Major Facilitator Superfamily ABED_0541 PF01725 Ham1 family ABED_0544 PF07963 Prokaryotic N-terminal methylation motif ABED_0545 PF03807 NADP oxidoreductase coenzyme F420-dependent ABED_0545 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABED_0546 PF13525 Outer membrane lipoprotein ABED_0547 PF00004 ATPase family associated with various cellular activities (AAA) ABED_0547 PF02190 ATP-dependent protease La (LON) domain ABED_0547 PF05362 Lon protease (S16) C-terminal proteolytic domain ABED_0548 PF01694 Rhomboid family ABED_0549 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABED_0551 PF13374 Tetratricopeptide repeat ABED_0551 PF13424 Tetratricopeptide repeat ABED_0552 PF01047 MarR family ABED_0553 PF12973 ChrR Cupin-like domain ABED_0554 PF12844 Helix-turn-helix domain ABED_0555 PF08447 PAS fold ABED_0556 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0557 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0557 PF08447 PAS fold ABED_0557 PF13426 PAS domain ABED_0558 PF11391 ABED_0558 ABED_0559 PF00892 EamA-like transporter family ABED_0560 PF04264 YceI-like domain ABED_0561 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain ABED_0561 PF02785 Biotin carboxylase C-terminal domain ABED_0561 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABED_0562 PF01883 Domain of unknown function DUF59 ABED_0563 PF02657 Fe-S metabolism associated domain ABED_0564 PF00266 Aminotransferase class-V ABED_0565 PF01458 Uncharacterized protein family (UPF0051) ABED_0566 PF00005 ABC transporter ABED_0567 PF01458 Uncharacterized protein family (UPF0051) ABED_0568 PF00266 Aminotransferase class-V ABED_0569 PF01106 NifU-like domain ABED_0569 PF01592 NifU-like N terminal domain ABED_0569 PF04324 BFD-like [2Fe-2S] binding domain ABED_0570 PF00571 CBS domain ABED_0571 PF00990 GGDEF domain ABED_0572 PF00206 Lyase ABED_0572 PF14698 Argininosuccinate lyase C-terminal ABED_0573 PF00072 Response regulator receiver domain ABED_0573 PF01584 CheW-like domain ABED_0574 PF00899 ThiF family ABED_0575 PF01272 Transcription elongation factor, GreA/GreB, C-term ABED_0575 PF03449 Transcription elongation factor, N-terminal ABED_0576 PF00149 Calcineurin-like phosphoesterase ABED_0577 PF00271 Helicase conserved C-terminal domain ABED_0577 PF02151 UvrB/uvrC motif ABED_0577 PF04851 Type III restriction enzyme, res subunit ABED_0577 PF12344 Ultra-violet resistance protein B ABED_0578 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0579 PF00730 HhH-GPD superfamily base excision DNA repair protein ABED_0581 PF00593 TonB dependent receptor ABED_0581 PF07715 TonB-dependent Receptor Plug Domain ABED_0582 PF00593 TonB dependent receptor ABED_0582 PF07715 TonB-dependent Receptor Plug Domain ABED_0583 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0584 PF01541 GIY-YIG catalytic domain ABED_0586 PF00072 Response regulator receiver domain ABED_0586 PF00486 Transcriptional regulatory protein, C terminal ABED_0587 PF00989 PAS fold ABED_0587 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0587 PF07695 ABED_0587 ABED_0587 PF13426 PAS domain ABED_0588 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0588 PF12729 ABED_0588 ABED_0589 PF13023 HD domain ABED_0590 PF09924 Uncharacterized conserved protein (DUF2156) ABED_0591 PF00583 Acetyltransferase (GNAT) family ABED_0592 PF02502 Ribose/Galactose Isomerase ABED_0593 PF00717 Peptidase S24-like ABED_0594 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ABED_0594 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABED_0595 PF01386 Ribosomal L25p family ABED_0595 PF14693 Ribosomal protein TL5, C-terminal domain ABED_0596 PF01195 Peptidyl-tRNA hydrolase ABED_0597 PF03739 ABED_0597 ABED_0598 PF00293 NUDIX domain ABED_0599 PF01520 N-acetylmuramoyl-L-alanine amidase ABED_0600 PF03060 Nitronate monooxygenase ABED_0601 PF00579 tRNA synthetases class I (W and Y) ABED_0601 PF01479 S4 domain ABED_0602 PF02824 TGS domain ABED_0602 PF04607 Region found in RelA / SpoT proteins ABED_0602 PF13328 HD domain ABED_0603 PF01192 RNA polymerase Rpb6 ABED_0604 PF00696 Amino acid kinase family ABED_0606 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ABED_0607 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ABED_0608 PF00425 chorismate binding enzyme ABED_0608 PF04715 Anthranilate synthase component I, N terminal region ABED_0609 PF05036 Sporulation related domain ABED_0610 PF00464 Serine hydroxymethyltransferase ABED_0611 PF00152 tRNA synthetases class II (D, K and N) ABED_0611 PF01336 OB-fold nucleic acid binding domain ABED_0612 PF02674 ABED_0612 ABED_0613 PF04551 GcpE protein ABED_0614 PF00990 GGDEF domain ABED_0614 PF13682 Chemoreceptor zinc-binding domain ABED_0615 PF00772 DnaB-like helicase N terminal domain ABED_0615 PF03796 DnaB-like helicase C terminal domain ABED_0616 PF02706 Chain length determinant protein ABED_0617 PF02719 Polysaccharide biosynthesis protein ABED_0618 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABED_0619 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_0620 PF03102 NeuB family ABED_0620 PF08666 SAF domain ABED_0621 PF02350 UDP-N-acetylglucosamine 2-epimerase ABED_0622 PF00483 Nucleotidyl transferase ABED_0622 PF00571 CBS domain ABED_0623 PF02348 Cytidylyltransferase ABED_0624 PF00202 Aminotransferase class-III ABED_0626 PF00117 Glutamine amidotransferase class-I ABED_0627 PF00977 Histidine biosynthesis protein ABED_0629 PF00795 Carbon-nitrogen hydrolase ABED_0630 PF13561 Enoyl-(Acyl carrier protein) reductase ABED_0631 PF01943 ABED_0631 ABED_0633 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_0634 PF01370 NAD dependent epimerase/dehydratase family ABED_0637 PF01370 NAD dependent epimerase/dehydratase family ABED_0638 PF00534 Glycosyl transferases group 1 ABED_0639 PF02719 Polysaccharide biosynthesis protein ABED_0639 PF08485 Polysaccharide biosynthesis protein C-terminal ABED_0640 PF02350 UDP-N-acetylglucosamine 2-epimerase ABED_0641 PF04321 RmlD substrate binding domain ABED_0642 PF00534 Glycosyl transferases group 1 ABED_0643 PF01370 NAD dependent epimerase/dehydratase family ABED_0644 PF00953 Glycosyl transferase family 4 ABED_0645 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ABED_0646 PF02719 Polysaccharide biosynthesis protein ABED_0648 PF01068 ATP dependent DNA ligase domain ABED_0648 PF14743 DNA ligase OB-like domain ABED_0649 PF00156 Phosphoribosyl transferase domain ABED_0650 PF00291 Pyridoxal-phosphate dependent enzyme ABED_0651 PF09335 ABED_0651 ABED_0652 PF00883 Cytosol aminopeptidase family, catalytic domain ABED_0652 PF02789 Cytosol aminopeptidase family, N-terminal domain ABED_0653 PF03544 Gram-negative bacterial TonB protein C-terminal ABED_0654 PF02472 Biopolymer transport protein ExbD/TolR ABED_0655 PF01618 ABED_0655 ABED_0656 PF02321 Outer membrane efflux protein ABED_0657 PF16576 ABED_0657 ABED_0658 PF00005 ABC transporter ABED_0659 PF02687 ABED_0659 ABED_0659 PF12704 MacB-like periplasmic core domain ABED_0660 PF00023 Ankyrin repeat ABED_0660 PF12796 Ankyrin repeats (3 copies) ABED_0662 PF00122 E1-E2 ATPase ABED_0662 PF00702 haloacid dehalogenase-like hydrolase ABED_0666 PF09968 Uncharacterized protein domain (DUF2202) ABED_0668 PF01475 Ferric uptake regulator family ABED_0670 PF00206 Lyase ABED_0670 PF10415 Fumarase C C-terminus ABED_0672 PF07568 ABED_0672 ABED_0673 PF00072 Response regulator receiver domain ABED_0673 PF00486 Transcriptional regulatory protein, C terminal ABED_0674 PF00593 TonB dependent receptor ABED_0674 PF07715 TonB-dependent Receptor Plug Domain ABED_0675 PF13640 2OG-Fe(II) oxygenase superfamily ABED_0676 PF01070 FMN-dependent dehydrogenase ABED_0677 PF00593 TonB dependent receptor ABED_0677 PF07715 TonB-dependent Receptor Plug Domain ABED_0679 PF03929 ABED_0679 ABED_0680 PF04328 ABED_0680 ABED_0681 PF02554 ABED_0681 ABED_0681 PF13722 ABED_0681 ABED_0682 PF01926 50S ribosome-binding GTPase ABED_0682 PF06071 Protein of unknown function (DUF933) ABED_0683 PF08668 HDOD domain ABED_0684 PF13114 ABED_0684 ABED_0685 PF14591 AF0941-like ABED_0686 PF06865 Protein of unknown function (DUF1255) ABED_0687 PF05573 NosL ABED_0688 PF00586 AIR synthase related protein, N-terminal domain ABED_0689 PF01142 tRNA pseudouridine synthase D (TruD) ABED_0691 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0691 PF11845 ABED_0691 ABED_0692 PF01330 RuvA N terminal domain ABED_0692 PF07499 RuvA, C-terminal domain ABED_0692 PF14520 Helix-hairpin-helix domain ABED_0693 PF01820 D-ala D-ala ligase N-terminus ABED_0693 PF07478 D-ala D-ala ligase C-terminus ABED_0694 PF12697 Alpha/beta hydrolase family ABED_0695 PF08245 Mur ligase middle domain ABED_0696 PF01230 HIT domain ABED_0698 PF00338 Ribosomal protein S10p/S20e ABED_0699 PF00297 Ribosomal protein L3 ABED_0700 PF00573 Ribosomal protein L4/L1 family ABED_0701 PF00276 Ribosomal protein L23 ABED_0702 PF00181 Ribosomal Proteins L2, RNA binding domain ABED_0702 PF03947 Ribosomal Proteins L2, C-terminal domain ABED_0703 PF00203 Ribosomal protein S19 ABED_0704 PF00237 Ribosomal protein L22p/L17e ABED_0705 PF00189 Ribosomal protein S3, C-terminal domain ABED_0705 PF07650 KH domain ABED_0706 PF00252 Ribosomal protein L16p/L10e ABED_0707 PF00831 Ribosomal L29 protein ABED_0708 PF00366 Ribosomal protein S17 ABED_0709 PF00238 Ribosomal protein L14p/L23e ABED_0710 PF00467 KOW motif ABED_0710 PF17136 ABED_0710 ABED_0711 PF00281 Ribosomal protein L5 ABED_0711 PF00673 ribosomal L5P family C-terminus ABED_0712 PF00253 Ribosomal protein S14p/S29e ABED_0713 PF00410 Ribosomal protein S8 ABED_0714 PF00347 Ribosomal protein L6 ABED_0715 PF00861 Ribosomal L18p/L5e family ABED_0716 PF00333 Ribosomal protein S5, N-terminal domain ABED_0716 PF03719 Ribosomal protein S5, C-terminal domain ABED_0717 PF00828 Ribosomal protein L18e/L15 ABED_0718 PF00344 SecY translocase ABED_0719 PF00557 Metallopeptidase family M24 ABED_0720 PF01176 Translation initiation factor 1A / IF-1 ABED_0721 PF03167 Uracil DNA glycosylase superfamily ABED_0723 PF00152 tRNA synthetases class II (D, K and N) ABED_0723 PF01336 OB-fold nucleic acid binding domain ABED_0723 PF02938 GAD domain ABED_0724 PF01584 CheW-like domain ABED_0725 PF04055 Radical SAM superfamily ABED_0725 PF08497 ABED_0725 ABED_0726 PF00406 Adenylate kinase ABED_0726 PF05191 Adenylate kinase, active site lid ABED_0727 PF00406 Adenylate kinase ABED_0728 PF00994 Probable molybdopterin binding domain ABED_0729 PF00302 Chloramphenicol acetyltransferase ABED_0730 PF13508 Acetyltransferase (GNAT) domain ABED_0731 PF00107 Zinc-binding dehydrogenase ABED_0731 PF08240 Alcohol dehydrogenase GroES-like domain ABED_0732 PF00465 Iron-containing alcohol dehydrogenase ABED_0733 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0733 PF17201 ABED_0733 ABED_0734 PF00842 Alanine racemase, C-terminal domain ABED_0734 PF01168 Alanine racemase, N-terminal domain ABED_0735 PF01541 GIY-YIG catalytic domain ABED_0735 PF02151 UvrB/uvrC motif ABED_0735 PF08459 UvrC Helix-hairpin-helix N-terminal ABED_0736 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0736 PF02743 Cache domain ABED_0737 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0737 PF12729 ABED_0737 ABED_0738 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0738 PF12729 ABED_0738 ABED_0739 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0739 PF12729 ABED_0739 ABED_0741 PF00440 Bacterial regulatory proteins, tetR family ABED_0741 PF13972 Bacterial transcriptional repressor ABED_0742 PF00873 AcrB/AcrD/AcrF family ABED_0743 PF16576 ABED_0743 ABED_0744 PF02321 Outer membrane efflux protein ABED_0745 PF01047 MarR family ABED_0748 PF00990 GGDEF domain ABED_0749 PF03372 Endonuclease/Exonuclease/phosphatase family ABED_0751 PF01925 ABED_0751 ABED_0752 PF10985 ABED_0752 ABED_0753 PF08212 Lipocalin-like domain ABED_0754 PF04055 Radical SAM superfamily ABED_0755 PF13566 ABED_0755 ABED_0756 PF03109 ABED_0756 ABED_0758 PF00563 EAL domain ABED_0759 PF00072 Response regulator receiver domain ABED_0759 PF04397 LytTr DNA-binding domain ABED_0760 PF06580 ABED_0760 ABED_0761 PF13450 NAD(P)-binding Rossmann-like domain ABED_0762 PF00875 DNA photolyase ABED_0762 PF03441 FAD binding domain of DNA photolyase ABED_0763 PF04463 ABED_0763 ABED_0763 PF08349 ABED_0763 ABED_0764 PF03547 ABED_0764 ABED_0765 PF04074 Domain of unknown function (DUF386) ABED_0766 PF00342 Phosphoglucose isomerase ABED_0767 PF00483 Nucleotidyl transferase ABED_0768 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABED_0768 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABED_0768 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABED_0768 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABED_0769 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0770 PF08447 PAS fold ABED_0771 PF01361 Tautomerase enzyme ABED_0772 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_0772 PF03466 LysR substrate binding domain ABED_0773 PF00218 Indole-3-glycerol phosphate synthase ABED_0775 PF03692 ABED_0775 ABED_0776 PF05175 Methyltransferase small domain ABED_0777 PF12838 4Fe-4S dicluster domain ABED_0778 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ABED_0778 PF17147 ABED_0778 ABED_0779 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABED_0780 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ABED_0781 PF00929 Exonuclease ABED_0782 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ABED_0783 PF00834 Ribulose-phosphate 3 epimerase family ABED_0784 PF02253 Phospholipase A1 ABED_0786 PF00293 NUDIX domain ABED_0787 PF04461 Protein of unknown function (DUF520) ABED_0788 PF03807 NADP oxidoreductase coenzyme F420-dependent ABED_0789 PF04241 ABED_0789 ABED_0790 PF00156 Phosphoribosyl transferase domain ABED_0793 PF01168 Alanine racemase, N-terminal domain ABED_0797 PF06067 ABED_0797 ABED_0798 PF05565 ABED_0798 ABED_0799 PF04098 Rad52/22 family double-strand break repair protein ABED_0800 PF11171 ABED_0800 ABED_0801 PF01381 Helix-turn-helix ABED_0803 PF11726 ABED_0803 ABED_0804 PF02384 N-6 DNA Methylase ABED_0804 PF12161 HsdM N-terminal domain ABED_0805 PF01420 Type I restriction modification DNA specificity domain ABED_0806 PF02661 Fic/DOC family ABED_0807 PF03235 ABED_0807 ABED_0808 PF03235 ABED_0808 ABED_0808 PF07510 ABED_0808 ABED_0809 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ABED_0809 PF04851 Type III restriction enzyme, res subunit ABED_0810 PF01863 Protein of unknown function DUF45 ABED_0816 PF01381 Helix-turn-helix ABED_0817 PF07804 HipA-like C-terminal domain ABED_0817 PF13657 HipA N-terminal domain ABED_0819 PF08447 PAS fold ABED_0820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0821 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_0821 PF13682 Chemoreceptor zinc-binding domain ABED_0822 PF00589 Phage integrase family ABED_0822 PF14659 Phage integrase, N-terminal SAM-like domain ABED_0823 PF02163 Peptidase family M50 ABED_0823 PF13180 PDZ domain ABED_0824 PF01066 CDP-alcohol phosphatidyltransferase ABED_0825 PF13561 Enoyl-(Acyl carrier protein) reductase ABED_0826 PF00701 Dihydrodipicolinate synthetase family ABED_0827 PF00675 Insulinase (Peptidase family M16) ABED_0827 PF05193 Peptidase M16 inactive domain ABED_0828 PF01180 Dihydroorotate dehydrogenase ABED_0829 PF00005 ABC transporter ABED_0829 PF00664 ABC transporter transmembrane region ABED_0830 PF03023 ABED_0830 ABED_0831 PF03372 Endonuclease/Exonuclease/phosphatase family ABED_0832 PF01475 Ferric uptake regulator family ABED_0833 PF02130 Uncharacterized protein family UPF0054 ABED_0834 PF03061 Thioesterase superfamily ABED_0835 PF03575 Peptidase family S51 ABED_0836 PF13481 AAA domain ABED_0836 PF13541 Subunit ChlI of Mg-chelatase ABED_0837 PF05728 Uncharacterised protein family (UPF0227) ABED_0838 PF00034 Cytochrome c ABED_0838 PF03150 Di-haem cytochrome c peroxidase ABED_0839 PF00563 EAL domain ABED_0839 PF00990 GGDEF domain ABED_0839 PF13426 PAS domain ABED_0841 PF00448 SRP54-type protein, GTPase domain ABED_0842 PF13905 Thioredoxin-like ABED_0843 PF01812 5-formyltetrahydrofolate cyclo-ligase family ABED_0844 PF00013 KH domain ABED_0844 PF01966 HD domain ABED_0844 PF12072 ABED_0844 ABED_0845 PF03602 Conserved hypothetical protein 95 ABED_0846 PF00528 Binding-protein-dependent transport system inner membrane component ABED_0847 PF00106 short chain dehydrogenase ABED_0848 PF09674 ABED_0848 ABED_0851 PF00034 Cytochrome c ABED_0852 PF14827 Sensory domain of two-component sensor kinase ABED_0853 PF00072 Response regulator receiver domain ABED_0853 PF00486 Transcriptional regulatory protein, C terminal ABED_0854 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0855 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABED_0855 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABED_0856 PF00990 GGDEF domain ABED_0857 PF09424 Yqey-like protein ABED_0858 PF00005 ABC transporter ABED_0858 PF12848 ABC transporter ABED_0858 PF16326 ABED_0858 ABED_0860 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_0861 PF00561 alpha/beta hydrolase fold ABED_0862 PF11127 Protein of unknown function (DUF2892) ABED_0863 PF17033 ABED_0863 ABED_0863 PF17129 ABED_0863 ABED_0864 PF01042 Endoribonuclease L-PSP ABED_0867 PF02696 ABED_0867 ABED_0869 PF00117 Glutamine amidotransferase class-I ABED_0869 PF00958 GMP synthase C terminal domain ABED_0869 PF02540 NAD synthase ABED_0870 PF00890 FAD binding domain ABED_0871 PF05258 ABED_0871 ABED_0872 PF01863 Protein of unknown function DUF45 ABED_0873 PF00155 Aminotransferase class I and II ABED_0874 PF01545 Cation efflux family ABED_0874 PF16916 ABED_0874 ABED_0875 PF01590 GAF domain ABED_0875 PF01966 HD domain ABED_0875 PF12706 Beta-lactamase superfamily domain ABED_0875 PF13487 HD domain ABED_0876 PF00211 Adenylate and Guanylate cyclase catalytic domain ABED_0876 PF05226 ABED_0876 ABED_0877 PF04575 ABED_0877 ABED_0877 PF14559 Tetratricopeptide repeat ABED_0878 PF04773 FecR protein ABED_0879 PF01757 ABED_0879 ABED_0881 PF03062 ABED_0881 ABED_0882 PF10672 S-adenosylmethionine-dependent methyltransferase ABED_0883 PF07690 Major Facilitator Superfamily ABED_0884 PF10670 ABED_0884 ABED_0885 PF01891 Cobalt uptake substrate-specific transmembrane region ABED_0887 PF02361 Cobalt transport protein ABED_0888 PF00005 ABC transporter ABED_0889 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ABED_0889 PF08479 POTRA domain, ShlB-type ABED_0889 PF17287 ABED_0889 ABED_0890 PF05860 haemagglutination activity domain ABED_0890 PF13332 ABED_0890 ABED_0895 PF17409 ABED_0895 ABED_0898 PF00069 Protein kinase domain ABED_0900 PF01594 ABED_0900 ABED_0902 PF12870 Lumazine-binding domain ABED_0903 PF01935 Domain of unknown function DUF87 ABED_0907 PF08447 PAS fold ABED_0908 PF01925 ABED_0908 ABED_0909 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_0910 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABED_0911 PF03129 Anticodon binding domain ABED_0911 PF13393 Histidyl-tRNA synthetase ABED_0912 PF02223 Thymidylate kinase ABED_0913 PF01467 Cytidylyltransferase ABED_0914 PF02441 Flavoprotein ABED_0915 PF00239 Resolvase, N terminal domain ABED_0916 PF01281 Ribosomal protein L9, N-terminal domain ABED_0916 PF03948 Ribosomal protein L9, C-terminal domain ABED_0917 PF00227 Proteasome subunit ABED_0918 PF00004 ATPase family associated with various cellular activities (AAA) ABED_0918 PF07724 AAA domain (Cdc48 subfamily) ABED_0918 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_0920 PF01026 TatD related DNase ABED_0921 PF01464 Transglycosylase SLT domain ABED_0921 PF01476 LysM domain ABED_0922 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel ABED_0922 PF05036 Sporulation related domain ABED_0923 PF00475 Imidazoleglycerol-phosphate dehydratase ABED_0924 PF08282 haloacid dehalogenase-like hydrolase ABED_0925 PF06835 Lipopolysaccharide-assembly, LptC-related ABED_0926 PF03968 OstA-like protein ABED_0927 PF01926 50S ribosome-binding GTPase ABED_0928 PF00583 Acetyltransferase (GNAT) family ABED_0929 PF04542 Sigma-70 region 2 ABED_0929 PF08281 Sigma-70, region 4 ABED_0930 PF04773 FecR protein ABED_0930 PF16344 ABED_0930 ABED_0931 PF00593 TonB dependent receptor ABED_0931 PF07715 TonB-dependent Receptor Plug Domain ABED_0932 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABED_0933 PF00155 Aminotransferase class I and II ABED_0933 PF00392 Bacterial regulatory proteins, gntR family ABED_0935 PF12900 Pyridoxamine 5'-phosphate oxidase ABED_0936 PF00873 AcrB/AcrD/AcrF family ABED_0937 PF00873 AcrB/AcrD/AcrF family ABED_0938 PF16576 ABED_0938 ABED_0939 PF02321 Outer membrane efflux protein ABED_0940 PF00989 PAS fold ABED_0940 PF01966 HD domain ABED_0940 PF14827 Sensory domain of two-component sensor kinase ABED_0941 PF00813 ABED_0941 ABED_0942 PF00905 Penicillin binding protein transpeptidase domain ABED_0942 PF03717 Penicillin-binding Protein dimerisation domain ABED_0944 PF01551 Peptidase family M23 ABED_0946 PF00005 ABC transporter ABED_0947 PF02390 Putative methyltransferase ABED_0948 PF00041 Fibronectin type III domain ABED_0949 PF00849 RNA pseudouridylate synthase ABED_0949 PF01479 S4 domain ABED_0950 PF01098 ABED_0950 ABED_0951 PF03544 Gram-negative bacterial TonB protein C-terminal ABED_0952 PF00202 Aminotransferase class-III ABED_0953 PF06865 Protein of unknown function (DUF1255) ABED_0954 PF09527 ABED_0954 ABED_0957 PF00140 Sigma-70 factor, region 1 ABED_0957 PF04539 Sigma-70 region 3 ABED_0957 PF04542 Sigma-70 region 2 ABED_0957 PF04545 Sigma-70, region 4 ABED_0958 PF00694 Aconitase C-terminal domain ABED_0959 PF00180 Isocitrate/isopropylmalate dehydrogenase ABED_0961 PF01230 HIT domain ABED_0962 PF00444 Ribosomal protein L36 ABED_0963 PF00416 Ribosomal protein S13/S18 ABED_0964 PF00411 Ribosomal protein S11 ABED_0965 PF00163 Ribosomal protein S4/S9 N-terminal domain ABED_0965 PF01479 S4 domain ABED_0966 PF01000 RNA polymerase Rpb3/RpoA insert domain ABED_0966 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ABED_0966 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ABED_0967 PF01196 Ribosomal protein L17 ABED_0968 PF01425 Amidase ABED_0969 PF00478 IMP dehydrogenase / GMP reductase domain ABED_0969 PF00571 CBS domain ABED_0970 PF07883 Cupin domain ABED_0971 PF13274 ABED_0971 ABED_0972 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABED_0973 PF00072 Response regulator receiver domain ABED_0973 PF00486 Transcriptional regulatory protein, C terminal ABED_0974 PF02321 Outer membrane efflux protein ABED_0975 PF13437 HlyD family secretion protein ABED_0976 PF00028 Cadherin domain ABED_0976 PF05345 Putative Ig domain ABED_0976 PF14252 ABED_0976 ABED_0977 PF16576 ABED_0977 ABED_0978 PF16576 ABED_0978 ABED_0979 PF00226 DnaJ domain ABED_0980 PF00226 DnaJ domain ABED_0981 PF00933 Glycosyl hydrolase family 3 N terminal domain ABED_0982 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_0982 PF07695 ABED_0982 ABED_0982 PF07696 7TMR-DISM extracellular 2 ABED_0983 PF00072 Response regulator receiver domain ABED_0983 PF00486 Transcriptional regulatory protein, C terminal ABED_0984 PF05860 haemagglutination activity domain ABED_0984 PF07581 ABED_0984 ABED_0985 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ABED_0985 PF08479 POTRA domain, ShlB-type ABED_0987 PF00005 ABC transporter ABED_0988 PF04542 Sigma-70 region 2 ABED_0988 PF08281 Sigma-70, region 4 ABED_0989 PF04773 FecR protein ABED_0989 PF16344 ABED_0989 ABED_0990 PF00107 Zinc-binding dehydrogenase ABED_0990 PF08240 Alcohol dehydrogenase GroES-like domain ABED_0992 PF00027 Cyclic nucleotide-binding domain ABED_0993 PF00892 EamA-like transporter family ABED_0994 PF01638 HxlR-like helix-turn-helix ABED_0995 PF02525 Flavodoxin-like fold ABED_0996 PF00939 Sodium:sulfate symporter transmembrane region ABED_0997 PF00893 Small Multidrug Resistance protein ABED_0998 PF00892 EamA-like transporter family ABED_0999 PF12833 Helix-turn-helix domain ABED_1000 PF01161 Phosphatidylethanolamine-binding protein ABED_1001 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_1001 PF03466 LysR substrate binding domain ABED_1002 PF03601 ABED_1002 ABED_1003 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein ABED_1004 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABED_1004 PF02770 Acyl-CoA dehydrogenase, middle domain ABED_1004 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABED_1006 PF13098 Thioredoxin-like domain ABED_1007 PF03547 ABED_1007 ABED_1008 PF01638 HxlR-like helix-turn-helix ABED_1009 PF02525 Flavodoxin-like fold ABED_1010 PF03992 Antibiotic biosynthesis monooxygenase ABED_1011 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABED_1012 PF00892 EamA-like transporter family ABED_1013 PF00881 Nitroreductase family ABED_1015 PF00005 ABC transporter ABED_1015 PF12848 ABC transporter ABED_1016 PF03061 Thioesterase superfamily ABED_1017 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1018 PF00533 BRCA1 C Terminus (BRCT) domain ABED_1018 PF01653 NAD-dependent DNA ligase adenylation domain ABED_1018 PF03120 NAD-dependent DNA ligase OB-fold domain ABED_1018 PF12826 Helix-hairpin-helix motif ABED_1019 PF03738 Glutathionylspermidine synthase preATP-grasp ABED_1021 PF01966 HD domain ABED_1021 PF13286 Phosphohydrolase-associated domain ABED_1022 PF01488 Shikimate / quinate 5-dehydrogenase ABED_1022 PF08501 Shikimate dehydrogenase substrate binding domain ABED_1023 PF13649 Methyltransferase domain ABED_1024 PF02578 Multi-copper polyphenol oxidoreductase laccase ABED_1025 PF00390 Malic enzyme, N-terminal domain ABED_1025 PF03949 Malic enzyme, NAD binding domain ABED_1026 PF00551 Formyl transferase ABED_1027 PF00588 SpoU rRNA Methylase family ABED_1028 PF08988 Protein of unknown function (DUF1895) ABED_1029 PF02690 ABED_1029 ABED_1032 PF00072 Response regulator receiver domain ABED_1032 PF00486 Transcriptional regulatory protein, C terminal ABED_1033 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1034 PF01145 SPFH domain / Band 7 family ABED_1035 PF01957 NfeD-like C-terminal, partner-binding ABED_1037 PF08238 Sel1 repeat ABED_1038 PF04134 ABED_1038 ABED_1039 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ABED_1040 PF00849 RNA pseudouridylate synthase ABED_1041 PF13419 Haloacid dehalogenase-like hydrolase ABED_1043 PF13386 ABED_1043 ABED_1045 PF00593 TonB dependent receptor ABED_1045 PF07715 TonB-dependent Receptor Plug Domain ABED_1046 PF01497 Periplasmic binding protein ABED_1047 PF00005 ABC transporter ABED_1048 PF01032 FecCD transport family ABED_1049 PF00999 Sodium/hydrogen exchanger family ABED_1050 PF00300 Histidine phosphatase superfamily (branch 1) ABED_1051 PF00005 ABC transporter ABED_1051 PF00664 ABC transporter transmembrane region ABED_1052 PF06518 Protein of unknown function (DUF1104) ABED_1053 PF00072 Response regulator receiver domain ABED_1053 PF00486 Transcriptional regulatory protein, C terminal ABED_1054 PF00512 His Kinase A (phospho-acceptor) domain ABED_1054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1056 PF05433 ABED_1056 ABED_1057 PF00669 Bacterial flagellin N-terminal helical region ABED_1058 PF00929 Exonuclease ABED_1059 PF00990 GGDEF domain ABED_1060 PF01381 Helix-turn-helix ABED_1061 PF00270 DEAD/DEAH box helicase ABED_1061 PF00271 Helicase conserved C-terminal domain ABED_1062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1063 PF00072 Response regulator receiver domain ABED_1063 PF00486 Transcriptional regulatory protein, C terminal ABED_1064 PF00691 OmpA family ABED_1064 PF02321 Outer membrane efflux protein ABED_1064 PF02412 Thrombospondin type 3 repeat ABED_1065 PF00005 ABC transporter ABED_1065 PF00664 ABC transporter transmembrane region ABED_1066 PF13437 HlyD family secretion protein ABED_1067 PF00196 Bacterial regulatory proteins, luxR family ABED_1068 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP ABED_1069 PF00563 EAL domain ABED_1069 PF00990 GGDEF domain ABED_1069 PF16448 ABED_1069 ABED_1070 PF01761 3-dehydroquinate synthase ABED_1071 PF00924 Mechanosensitive ion channel ABED_1072 PF00919 Uncharacterized protein family UPF0004 ABED_1072 PF04055 Radical SAM superfamily ABED_1073 PF00004 ATPase family associated with various cellular activities (AAA) ABED_1075 PF00994 Probable molybdopterin binding domain ABED_1076 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABED_1077 PF01841 Transglutaminase-like superfamily ABED_1078 PF00300 Histidine phosphatase superfamily (branch 1) ABED_1080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABED_1081 PF01381 Helix-turn-helix ABED_1083 PF14526 Integron-associated effector binding protein ABED_1085 PF00384 Molybdopterin oxidoreductase ABED_1085 PF01568 Molydopterin dinucleotide binding domain ABED_1086 PF00561 alpha/beta hydrolase fold ABED_1087 PF00440 Bacterial regulatory proteins, tetR family ABED_1087 PF16925 ABED_1087 ABED_1088 PF00488 MutS domain V ABED_1088 PF01713 Smr domain ABED_1089 PF00571 CBS domain ABED_1089 PF01595 ABED_1089 ABED_1089 PF03471 Transporter associated domain ABED_1090 PF05359 ABED_1090 ABED_1091 PF01546 Peptidase family M20/M25/M40 ABED_1091 PF07687 Peptidase dimerisation domain ABED_1092 PF00909 Ammonium Transporter Family ABED_1093 PF00543 Nitrogen regulatory protein P-II ABED_1094 PF01066 CDP-alcohol phosphatidyltransferase ABED_1095 PF02541 Ppx/GppA phosphatase family ABED_1097 PF00205 Thiamine pyrophosphate enzyme, central domain ABED_1097 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABED_1097 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABED_1098 PF10369 Small subunit of acetolactate synthase ABED_1098 PF13710 ACT domain ABED_1099 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_1099 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ABED_1100 PF01580 FtsK/SpoIIIE family ABED_1100 PF09397 Ftsk gamma domain ABED_1101 PF00072 Response regulator receiver domain ABED_1101 PF00486 Transcriptional regulatory protein, C terminal ABED_1104 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ABED_1104 PF16321 ABED_1104 ABED_1105 PF01926 50S ribosome-binding GTPase ABED_1105 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ABED_1106 PF00916 ABED_1106 ABED_1106 PF01740 STAS domain ABED_1107 PF02602 Uroporphyrinogen-III synthase HemD ABED_1108 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ABED_1108 PF02843 Phosphoribosylglycinamide synthetase, C domain ABED_1108 PF02844 Phosphoribosylglycinamide synthetase, N domain ABED_1109 PF06271 ABED_1109 ABED_1111 PF00156 Phosphoribosyl transferase domain ABED_1112 PF00013 KH domain ABED_1112 PF00575 S1 RNA binding domain ABED_1112 PF01138 3' exoribonuclease family, domain 1 ABED_1112 PF03725 3' exoribonuclease family, domain 2 ABED_1112 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ABED_1113 PF00072 Response regulator receiver domain ABED_1114 PF01584 CheW-like domain ABED_1114 PF01627 Hpt domain ABED_1114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1114 PF02895 Signal transducing histidine kinase, homodimeric domain ABED_1115 PF01739 CheR methyltransferase, SAM binding domain ABED_1115 PF03705 CheR methyltransferase, all-alpha domain ABED_1116 PF03975 CheD chemotactic sensory transduction ABED_1117 PF00072 Response regulator receiver domain ABED_1117 PF01339 CheB methylesterase ABED_1119 PF07690 Major Facilitator Superfamily ABED_1120 PF00589 Phage integrase family ABED_1121 PF01903 CbiX ABED_1124 PF01432 Peptidase family M3 ABED_1125 PF05175 Methyltransferase small domain ABED_1126 PF04055 Radical SAM superfamily ABED_1127 PF00293 NUDIX domain ABED_1128 PF00696 Amino acid kinase family ABED_1128 PF01842 ACT domain ABED_1128 PF13840 ACT domain ABED_1129 PF12163 DNA replication regulator ABED_1130 PF13177 DNA polymerase III, delta subunit ABED_1131 PF00809 Pterin binding enzyme ABED_1132 PF02153 Prephenate dehydrogenase ABED_1133 PF01103 Surface antigen ABED_1133 PF07244 Surface antigen variable number repeat ABED_1134 PF04055 Radical SAM superfamily ABED_1135 PF00675 Insulinase (Peptidase family M16) ABED_1135 PF05193 Peptidase M16 inactive domain ABED_1136 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABED_1137 PF02325 ABED_1137 ABED_1138 PF01464 Transglycosylase SLT domain ABED_1140 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ABED_1141 PF00316 Fructose-1-6-bisphosphatase ABED_1143 PF00133 tRNA synthetases class I (I, L, M and V) ABED_1143 PF01588 Putative tRNA binding domain ABED_1143 PF09334 tRNA synthetases class I (M) ABED_1145 PF00717 Peptidase S24-like ABED_1146 PF04277 ABED_1146 ABED_1147 PF00364 Biotin-requiring enzyme ABED_1147 PF00682 HMGL-like ABED_1147 PF02436 Conserved carboxylase domain ABED_1148 PF01293 Phosphoenolpyruvate carboxykinase ABED_1149 PF00925 GTP cyclohydrolase II ABED_1149 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABED_1150 PF02092 ABED_1150 ABED_1153 PF02069 Prokaryotic metallothionein ABED_1154 PF02527 rRNA small subunit methyltransferase G ABED_1155 PF00925 GTP cyclohydrolase II ABED_1156 PF00490 Delta-aminolevulinic acid dehydratase ABED_1157 PF00989 PAS fold ABED_1157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1158 PF00072 Response regulator receiver domain ABED_1158 PF00486 Transcriptional regulatory protein, C terminal ABED_1159 PF04055 Radical SAM superfamily ABED_1159 PF13353 4Fe-4S single cluster domain ABED_1160 PF13597 Anaerobic ribonucleoside-triphosphate reductase ABED_1161 PF03477 ATP cone domain ABED_1161 PF13597 Anaerobic ribonucleoside-triphosphate reductase ABED_1162 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABED_1162 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABED_1163 PF04055 Radical SAM superfamily ABED_1163 PF06969 HemN C-terminal domain ABED_1164 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ABED_1165 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABED_1166 PF02540 NAD synthase ABED_1168 PF04324 BFD-like [2Fe-2S] binding domain ABED_1169 PF00226 DnaJ domain ABED_1169 PF05099 Tellurite resistance protein TerB ABED_1171 PF02416 mttA/Hcf106 family ABED_1172 PF00902 Sec-independent protein translocase protein (TatC) ABED_1173 PF02547 Queuosine biosynthesis protein ABED_1174 PF00929 Exonuclease ABED_1175 PF03772 ABED_1175 ABED_1177 PF03781 Sulfatase-modifying factor enzyme 1 ABED_1177 PF08241 Methyltransferase domain ABED_1177 PF12867 DinB superfamily ABED_1181 PF02754 ABED_1181 ABED_1181 PF13183 4Fe-4S dicluster domain ABED_1182 PF01790 ABED_1182 ABED_1184 PF00072 Response regulator receiver domain ABED_1184 PF00486 Transcriptional regulatory protein, C terminal ABED_1185 PF00476 DNA polymerase family A ABED_1185 PF01367 5'-3' exonuclease, C-terminal SAM fold ABED_1185 PF01612 3'-5' exonuclease ABED_1185 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ABED_1186 PF13302 Acetyltransferase (GNAT) domain ABED_1187 PF02348 Cytidylyltransferase ABED_1188 PF00563 EAL domain ABED_1188 PF00990 GGDEF domain ABED_1189 PF00005 ABC transporter ABED_1189 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABED_1190 PF02367 Uncharacterised P-loop hydrolase UPF0079 ABED_1191 PF00591 Glycosyl transferase family, a/b domain ABED_1192 PF03008 ABED_1192 ABED_1193 PF01479 S4 domain ABED_1194 PF00764 Arginosuccinate synthase ABED_1195 PF00501 AMP-binding enzyme ABED_1196 PF03062 ABED_1196 ABED_1198 PF04914 DltD C-terminal region ABED_1199 PF00550 Phosphopantetheine attachment site ABED_1200 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_1201 PF02254 TrkA-N domain ABED_1202 PF02386 Cation transport protein ABED_1203 PF00072 Response regulator receiver domain ABED_1203 PF00486 Transcriptional regulatory protein, C terminal ABED_1204 PF00512 His Kinase A (phospho-acceptor) domain ABED_1204 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1204 PF13493 Domain of unknown function (DUF4118) ABED_1205 PF08761 dUTPase ABED_1207 PF02132 RecR protein ABED_1208 PF00226 DnaJ domain ABED_1208 PF00684 DnaJ central domain ABED_1208 PF01556 DnaJ C terminal domain ABED_1209 PF00291 Pyridoxal-phosphate dependent enzyme ABED_1212 PF04305 ABED_1212 ABED_1213 PF00753 Metallo-beta-lactamase superfamily ABED_1214 PF00990 GGDEF domain ABED_1215 PF00990 GGDEF domain ABED_1216 PF08003 Protein of unknown function (DUF1698) ABED_1217 PF00583 Acetyltransferase (GNAT) family ABED_1218 PF01578 ABED_1218 ABED_1218 PF05140 ABED_1218 ABED_1219 PF01546 Peptidase family M20/M25/M40 ABED_1221 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1221 PF08269 Cache domain ABED_1222 PF03548 Outer membrane lipoprotein carrier protein LolA ABED_1223 PF00271 Helicase conserved C-terminal domain ABED_1223 PF01043 SecA preprotein cross-linking domain ABED_1223 PF02810 SEC-C motif ABED_1223 PF07516 SecA Wing and Scaffold domain ABED_1223 PF07517 SecA DEAD-like domain ABED_1224 PF02687 ABED_1224 ABED_1224 PF12704 MacB-like periplasmic core domain ABED_1225 PF13109 ABED_1225 ABED_1225 PF13116 ABED_1225 ABED_1226 PF02618 YceG-like family ABED_1227 PF03971 Monomeric isocitrate dehydrogenase ABED_1228 PF00056 lactate/malate dehydrogenase, NAD binding domain ABED_1228 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ABED_1231 PF00877 NlpC/P60 family ABED_1231 PF12912 NLPC_P60 stabilising domain, N term ABED_1231 PF12913 SH3 domain of the SH3b1 type ABED_1233 PF01795 MraW methylase family ABED_1234 PF00596 Class II Aldolase and Adducin N-terminal domain ABED_1235 PF00216 Bacterial DNA-binding protein ABED_1236 PF07411 Domain of unknown function (DUF1508) ABED_1238 PF00301 Rubredoxin ABED_1240 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABED_1243 PF02661 Fic/DOC family ABED_1252 PF14297 ABED_1252 ABED_1258 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ABED_1259 PF05016 Plasmid stabilisation system protein ABED_1261 PF00589 Phage integrase family ABED_1261 PF13102 Phage integrase SAM-like domain ABED_1262 PF02082 Transcriptional regulator ABED_1263 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABED_1265 PF01266 FAD dependent oxidoreductase ABED_1267 PF00072 Response regulator receiver domain ABED_1268 PF13690 Chemotaxis phosphatase CheX ABED_1269 PF00989 PAS fold ABED_1269 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1269 PF13426 PAS domain ABED_1270 PF00226 DnaJ domain ABED_1270 PF01556 DnaJ C terminal domain ABED_1271 PF13411 MerR HTH family regulatory protein ABED_1272 PF13437 HlyD family secretion protein ABED_1273 PF00005 ABC transporter ABED_1274 PF12698 ABC-2 family transporter protein ABED_1275 PF12698 ABC-2 family transporter protein ABED_1276 PF04332 ABED_1276 ABED_1277 PF05525 ABED_1277 ABED_1278 PF00892 EamA-like transporter family ABED_1280 PF02142 MGS-like domain ABED_1280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABED_1280 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABED_1281 PF01522 Polysaccharide deacetylase ABED_1282 PF06965 Na+/H+ antiporter 1 ABED_1283 PF02609 Exonuclease VII small subunit ABED_1284 PF00561 alpha/beta hydrolase fold ABED_1285 PF00593 TonB dependent receptor ABED_1285 PF07715 TonB-dependent Receptor Plug Domain ABED_1287 PF00091 Tubulin/FtsZ family, GTPase domain ABED_1287 PF12327 FtsZ family, C-terminal domain ABED_1288 PF02491 SHS2 domain inserted in FTSA ABED_1288 PF14450 Cell division protein FtsA ABED_1289 PF13145 PPIC-type PPIASE domain ABED_1289 PF13624 SurA N-terminal domain ABED_1290 PF13538 UvrD-like helicase C-terminal domain ABED_1290 PF13604 AAA domain ABED_1290 PF14490 Helix-hairpin-helix containing domain ABED_1290 PF14520 Helix-hairpin-helix domain ABED_1292 PF03960 ArsC family ABED_1293 PF02120 Flagellar hook-length control protein FliK ABED_1294 PF01312 FlhB HrpN YscU SpaS Family ABED_1296 PF00005 ABC transporter ABED_1296 PF12848 ABC transporter ABED_1297 PF08020 Protein of unknown function (DUF1706) ABED_1298 PF14602 Hexapeptide repeat of succinyl-transferase ABED_1298 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ABED_1298 PF14790 Tetrahydrodipicolinate N-succinyltransferase N-terminal ABED_1299 PF08125 Mannitol dehydrogenase C-terminal domain ABED_1299 PF13419 Haloacid dehalogenase-like hydrolase ABED_1301 PF00270 DEAD/DEAH box helicase ABED_1301 PF00271 Helicase conserved C-terminal domain ABED_1306 PF01155 Hydrogenase expression/synthesis hypA family ABED_1307 PF00586 AIR synthase related protein, N-terminal domain ABED_1307 PF02769 AIR synthase related protein, C-terminal domain ABED_1308 PF12643 ABED_1308 ABED_1309 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABED_1309 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABED_1310 PF07693 ABED_1310 ABED_1311 PF01924 Hydrogenase formation hypA family ABED_1312 PF01455 HupF/HypC family ABED_1313 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABED_1315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1316 PF02588 ABED_1316 ABED_1316 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ABED_1317 PF03486 HI0933-like protein ABED_1318 PF05661 ABED_1318 ABED_1320 PF04338 Protein of unknown function, DUF481 ABED_1321 PF12823 ABED_1321 ABED_1323 PF02568 Thiamine biosynthesis protein (ThiI) ABED_1323 PF02926 THUMP domain ABED_1326 PF07399 ABED_1326 ABED_1327 PF00708 Acylphosphatase ABED_1327 PF01300 Telomere recombination ABED_1327 PF07503 HypF finger ABED_1329 PF01750 Hydrogenase maturation protease ABED_1330 PF01292 Prokaryotic cytochrome b561 ABED_1331 PF00374 Nickel-dependent hydrogenase ABED_1332 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_1332 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABED_1332 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ABED_1333 PF04773 FecR protein ABED_1333 PF16344 ABED_1333 ABED_1334 PF04542 Sigma-70 region 2 ABED_1334 PF08281 Sigma-70, region 4 ABED_1336 PF01750 Hydrogenase maturation protease ABED_1337 PF01292 Prokaryotic cytochrome b561 ABED_1338 PF00374 Nickel-dependent hydrogenase ABED_1339 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_1339 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ABED_1340 PF00374 Nickel-dependent hydrogenase ABED_1341 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_1341 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ABED_1343 PF00330 Aconitase family (aconitate hydratase) ABED_1343 PF06434 Aconitate hydratase 2 N-terminus ABED_1343 PF11791 Aconitate B N-terminal domain ABED_1344 PF09500 Putative thioesterase (yiiD_Cterm) ABED_1345 PF00990 GGDEF domain ABED_1345 PF08448 PAS fold ABED_1346 PF01709 Transcriptional regulator ABED_1347 PF04333 ABED_1347 ABED_1348 PF05494 Toluene tolerance, Ttg2 ABED_1349 PF03176 MMPL family ABED_1350 PF03641 Possible lysine decarboxylase ABED_1351 PF13419 Haloacid dehalogenase-like hydrolase ABED_1352 PF08534 Redoxin ABED_1353 PF13462 Thioredoxin ABED_1354 PF02600 Disulfide bond formation protein DsbB ABED_1355 PF00332 Glycosyl hydrolases family 17 ABED_1355 PF13641 Glycosyltransferase like family 2 ABED_1356 PF04542 Sigma-70 region 2 ABED_1356 PF08281 Sigma-70, region 4 ABED_1357 PF04773 FecR protein ABED_1357 PF16344 ABED_1357 ABED_1358 PF07660 Secretin and TonB N terminus short domain ABED_1358 PF07715 TonB-dependent Receptor Plug Domain ABED_1359 PF00990 GGDEF domain ABED_1359 PF02743 Cache domain ABED_1360 PF02915 Rubrerythrin ABED_1362 PF00999 Sodium/hydrogen exchanger family ABED_1362 PF02254 TrkA-N domain ABED_1364 PF00464 Serine hydroxymethyltransferase ABED_1365 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABED_1365 PF12833 Helix-turn-helix domain ABED_1366 PF00730 HhH-GPD superfamily base excision DNA repair protein ABED_1367 PF00075 RNase H ABED_1368 PF12900 Pyridoxamine 5'-phosphate oxidase ABED_1369 PF00202 Aminotransferase class-III ABED_1370 PF03473 MOSC domain ABED_1371 PF04055 Radical SAM superfamily ABED_1372 PF03099 Biotin/lipoate A/B protein ligase family ABED_1373 PF00456 Transketolase, thiamine diphosphate binding domain ABED_1374 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABED_1374 PF00364 Biotin-requiring enzyme ABED_1374 PF02817 e3 binding domain ABED_1375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABED_1375 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_1376 PF00117 Glutamine amidotransferase class-I ABED_1377 PF00593 TonB dependent receptor ABED_1377 PF07660 Secretin and TonB N terminus short domain ABED_1377 PF07715 TonB-dependent Receptor Plug Domain ABED_1378 PF01263 Aldose 1-epimerase ABED_1379 PF00905 Penicillin binding protein transpeptidase domain ABED_1380 PF00270 DEAD/DEAH box helicase ABED_1380 PF00271 Helicase conserved C-terminal domain ABED_1381 PF02624 YcaO-like family ABED_1382 PF03625 Domain of unknown function DUF302 ABED_1383 PF11026 ABED_1383 ABED_1384 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1384 PF08376 Nitrate and nitrite sensing ABED_1385 PF00075 RNase H ABED_1386 PF00682 HMGL-like ABED_1387 PF08803 Putative mono-oxygenase ydhR ABED_1388 PF07681 ABED_1388 ABED_1389 PF00817 impB/mucB/samB family ABED_1390 PF00994 Probable molybdopterin binding domain ABED_1390 PF03453 MoeA N-terminal region (domain I and II) ABED_1390 PF03454 MoeA C-terminal region (domain IV) ABED_1392 PF02634 FdhD/NarQ family ABED_1393 PF01292 Prokaryotic cytochrome b561 ABED_1394 PF13247 4Fe-4S dicluster domain ABED_1395 PF00384 Molybdopterin oxidoreductase ABED_1395 PF01568 Molydopterin dinucleotide binding domain ABED_1396 PF00384 Molybdopterin oxidoreductase ABED_1396 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABED_1398 PF02613 Nitrate reductase delta subunit ABED_1399 PF00037 4Fe-4S binding domain ABED_1399 PF13187 4Fe-4S dicluster domain ABED_1400 PF13458 Periplasmic binding protein ABED_1401 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1402 PF00072 Response regulator receiver domain ABED_1402 PF05732 ABED_1402 ABED_1403 PF01566 ABED_1403 ABED_1404 PF00403 Heavy-metal-associated domain ABED_1405 PF02411 ABED_1405 ABED_1406 PF01841 Transglutaminase-like superfamily ABED_1407 PF01292 Prokaryotic cytochrome b561 ABED_1408 PF13247 4Fe-4S dicluster domain ABED_1409 PF00384 Molybdopterin oxidoreductase ABED_1409 PF01568 Molydopterin dinucleotide binding domain ABED_1409 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABED_1411 PF00586 AIR synthase related protein, N-terminal domain ABED_1411 PF02769 AIR synthase related protein, C-terminal domain ABED_1413 PF11655 ABED_1413 ABED_1414 PF11655 ABED_1414 ABED_1418 PF00959 Phage lysozyme ABED_1420 PF08238 Sel1 repeat ABED_1421 PF03841 L-seryl-tRNA selenium transferase ABED_1422 PF00009 Elongation factor Tu GTP binding domain ABED_1422 PF09107 Elongation factor SelB, winged helix ABED_1423 PF13245 Part of AAA domain ABED_1427 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1427 PF08269 Cache domain ABED_1428 PF03358 NADPH-dependent FMN reductase ABED_1429 PF02562 PhoH-like protein ABED_1429 PF13638 PIN domain ABED_1431 PF00563 EAL domain ABED_1431 PF00990 GGDEF domain ABED_1431 PF13426 PAS domain ABED_1432 PF01243 Pyridoxamine 5'-phosphate oxidase ABED_1432 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ABED_1433 PF00990 GGDEF domain ABED_1433 PF13426 PAS domain ABED_1434 PF00270 DEAD/DEAH box helicase ABED_1434 PF00271 Helicase conserved C-terminal domain ABED_1434 PF03880 DbpA RNA binding domain ABED_1435 PF09335 ABED_1435 ABED_1436 PF13852 ABED_1436 ABED_1438 PF00183 Hsp90 protein ABED_1438 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1439 PF00141 Peroxidase ABED_1441 PF12796 Ankyrin repeats (3 copies) ABED_1441 PF13637 Ankyrin repeats (many copies) ABED_1442 PF02470 ABED_1442 ABED_1443 PF04403 ABED_1443 ABED_1444 PF04403 ABED_1444 ABED_1445 PF01152 Bacterial-like globin ABED_1446 PF00563 EAL domain ABED_1446 PF00990 GGDEF domain ABED_1447 PF10082 ABED_1447 ABED_1448 PF00892 EamA-like transporter family ABED_1450 PF04073 Aminoacyl-tRNA editing domain ABED_1451 PF04264 YceI-like domain ABED_1452 PF08713 DNA alkylation repair enzyme ABED_1453 PF03992 Antibiotic biosynthesis monooxygenase ABED_1455 PF01965 DJ-1/PfpI family ABED_1456 PF10294 Putative methyltransferase ABED_1457 PF07715 TonB-dependent Receptor Plug Domain ABED_1458 PF04773 FecR protein ABED_1458 PF16344 ABED_1458 ABED_1459 PF04542 Sigma-70 region 2 ABED_1459 PF08281 Sigma-70, region 4 ABED_1460 PF00491 Arginase family ABED_1461 PF00682 HMGL-like ABED_1462 PF02311 AraC-like ligand binding domain ABED_1462 PF12833 Helix-turn-helix domain ABED_1463 PF13673 Acetyltransferase (GNAT) domain ABED_1464 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABED_1464 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABED_1465 PF00924 Mechanosensitive ion channel ABED_1466 PF01368 DHH family ABED_1466 PF02833 DHHA2 domain ABED_1467 PF02589 Uncharacterised ACR, YkgG family COG1556 ABED_1468 PF00710 Asparaginase ABED_1469 PF00206 Lyase ABED_1469 PF10415 Fumarase C C-terminus ABED_1470 PF01048 Phosphorylase superfamily ABED_1471 PF00698 Acyl transferase domain ABED_1472 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABED_1473 PF13174 Tetratricopeptide repeat ABED_1474 PF00691 OmpA family ABED_1475 PF07676 WD40-like Beta Propeller Repeat ABED_1476 PF13103 TonB C terminal ABED_1477 PF02472 Biopolymer transport protein ExbD/TolR ABED_1478 PF01618 ABED_1478 ABED_1479 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ABED_1480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_1480 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABED_1481 PF00231 ATP synthase ABED_1482 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_1482 PF00306 ATP synthase alpha/beta chain, C terminal domain ABED_1482 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABED_1483 PF00213 ATP synthase delta (OSCP) subunit ABED_1484 PF00430 ATP synthase B/B' CF(0) ABED_1485 PF00430 ATP synthase B/B' CF(0) ABED_1486 PF02195 ParB-like nuclease domain ABED_1487 PF13614 AAA domain ABED_1488 PF03099 Biotin/lipoate A/B protein ligase family ABED_1489 PF03547 ABED_1489 ABED_1490 PF00551 Formyl transferase ABED_1490 PF02911 Formyl transferase, C-terminal domain ABED_1491 PF00696 Amino acid kinase family ABED_1492 PF01018 GTP1/OBG ABED_1492 PF01926 50S ribosome-binding GTPase ABED_1493 PF01016 Ribosomal L27 protein ABED_1494 PF00829 Ribosomal prokaryotic L21 protein ABED_1495 PF01807 CHC2 zinc finger ABED_1495 PF08275 DNA primase catalytic core, N-terminal domain ABED_1495 PF13662 Toprim domain ABED_1495 PF16730 ABED_1495 ABED_1497 PF00035 Double-stranded RNA binding motif ABED_1497 PF14622 Ribonuclease-III-like ABED_1498 PF01264 Chorismate synthase ABED_1499 PF13539 D-alanyl-D-alanine carboxypeptidase ABED_1500 PF01435 Peptidase family M48 ABED_1501 PF09601 ABED_1501 ABED_1502 PF00300 Histidine phosphatase superfamily (branch 1) ABED_1504 PF01926 50S ribosome-binding GTPase ABED_1504 PF10396 GTP-binding protein TrmE N-terminus ABED_1504 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE ABED_1505 PF14804 Jag N-terminus ABED_1506 PF02096 60Kd inner membrane protein ABED_1506 PF14849 YidC periplasmic domain ABED_1507 PF01809 ABED_1507 ABED_1508 PF00468 Ribosomal protein L34 ABED_1509 PF00004 ATPase family associated with various cellular activities (AAA) ABED_1509 PF02861 Clp amino terminal domain ABED_1509 PF07724 AAA domain (Cdc48 subfamily) ABED_1509 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_1510 PF01351 Ribonuclease HII ABED_1511 PF01910 Domain of unknown function DUF77 ABED_1512 PF03976 Polyphosphate kinase 2 (PPK2) ABED_1514 PF01625 Peptide methionine sulfoxide reductase ABED_1515 PF01641 SelR domain ABED_1516 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABED_1518 PF00293 NUDIX domain ABED_1519 PF00202 Aminotransferase class-III ABED_1520 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABED_1520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1520 PF09084 NMT1/THI5 like ABED_1521 PF01808 AICARFT/IMPCHase bienzyme ABED_1521 PF02142 MGS-like domain ABED_1522 PF00586 AIR synthase related protein, N-terminal domain ABED_1522 PF02769 AIR synthase related protein, C-terminal domain ABED_1523 PF03734 L,D-transpeptidase catalytic domain ABED_1524 PF01551 Peptidase family M23 ABED_1525 PF01227 GTP cyclohydrolase I ABED_1526 PF01544 CorA-like Mg2+ transporter protein ABED_1527 PF00482 Type II secretion system (T2SS), protein F ABED_1528 PF00437 Type II/IV secretion system protein ABED_1531 PF01926 50S ribosome-binding GTPase ABED_1531 PF07650 KH domain ABED_1533 PF01078 Magnesium chelatase, subunit ChlI ABED_1533 PF13335 ABED_1533 ABED_1533 PF13541 Subunit ChlI of Mg-chelatase ABED_1538 PF11074 ABED_1538 ABED_1540 PF13245 Part of AAA domain ABED_1540 PF13361 UvrD-like helicase C-terminal domain ABED_1541 PF13175 AAA ATPase domain ABED_1542 PF02463 RecF/RecN/SMC N terminal domain ABED_1543 PF00149 Calcineurin-like phosphoesterase ABED_1544 PF05708 Orthopoxvirus protein of unknown function (DUF830) ABED_1545 PF00271 Helicase conserved C-terminal domain ABED_1545 PF04851 Type III restriction enzyme, res subunit ABED_1550 PF13541 Subunit ChlI of Mg-chelatase ABED_1551 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1551 PF17201 ABED_1551 ABED_1552 PF08447 PAS fold ABED_1554 PF01327 Polypeptide deformylase ABED_1555 PF00574 Clp protease ABED_1556 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABED_1556 PF05697 Bacterial trigger factor protein (TF) ABED_1556 PF05698 Bacterial trigger factor protein (TF) C-terminus ABED_1557 PF03976 Polyphosphate kinase 2 (PPK2) ABED_1558 PF03976 Polyphosphate kinase 2 (PPK2) ABED_1559 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABED_1560 PF03435 Saccharopine dehydrogenase ABED_1560 PF16653 ABED_1560 ABED_1562 PF03734 L,D-transpeptidase catalytic domain ABED_1564 PF01053 Cys/Met metabolism PLP-dependent enzyme ABED_1565 PF01053 Cys/Met metabolism PLP-dependent enzyme ABED_1566 PF00072 Response regulator receiver domain ABED_1566 PF00486 Transcriptional regulatory protein, C terminal ABED_1567 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1567 PF12729 ABED_1567 ABED_1569 PF00072 Response regulator receiver domain ABED_1569 PF01966 HD domain ABED_1569 PF13426 PAS domain ABED_1570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1571 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABED_1571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1571 PF09084 NMT1/THI5 like ABED_1571 PF13426 PAS domain ABED_1572 PF03547 ABED_1572 ABED_1573 PF13746 4Fe-4S dicluster domain ABED_1574 PF00578 AhpC/TSA family ABED_1576 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABED_1577 PF00486 Transcriptional regulatory protein, C terminal ABED_1578 PF00583 Acetyltransferase (GNAT) family ABED_1579 PF03824 ABED_1579 ABED_1579 PF06226 ABED_1579 ABED_1580 PF01297 Periplasmic solute binding protein family ABED_1581 PF01475 Ferric uptake regulator family ABED_1582 PF06965 Na+/H+ antiporter 1 ABED_1583 PF00034 Cytochrome c ABED_1583 PF03150 Di-haem cytochrome c peroxidase ABED_1584 PF04116 ABED_1584 ABED_1585 PF09375 Imelysin ABED_1586 PF06537 ABED_1586 ABED_1587 PF09375 Imelysin ABED_1589 PF00137 ATP synthase subunit C ABED_1593 PF08543 Phosphomethylpyrimidine kinase ABED_1594 PF00171 Aldehyde dehydrogenase family ABED_1597 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ABED_1597 PF12801 ABED_1597 ABED_1597 PF13746 4Fe-4S dicluster domain ABED_1598 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1599 PF00072 Response regulator receiver domain ABED_1599 PF00486 Transcriptional regulatory protein, C terminal ABED_1600 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABED_1601 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABED_1601 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABED_1601 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABED_1601 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABED_1602 PF00795 Carbon-nitrogen hydrolase ABED_1603 PF01464 Transglycosylase SLT domain ABED_1604 PF10087 ABED_1604 ABED_1606 PF00258 Flavodoxin ABED_1607 PF01475 Ferric uptake regulator family ABED_1609 PF04376 ABED_1609 ABED_1609 PF04377 ABED_1609 ABED_1610 PF00290 Tryptophan synthase alpha chain ABED_1611 PF02548 Ketopantoate hydroxymethyltransferase ABED_1612 PF05491 Holliday junction DNA helicase ruvB C-terminus ABED_1612 PF05496 Holliday junction DNA helicase ruvB N-terminus ABED_1613 PF01594 ABED_1613 ABED_1614 PF00581 Rhodanese-like domain ABED_1614 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain ABED_1615 PF04055 Radical SAM superfamily ABED_1615 PF13353 4Fe-4S single cluster domain ABED_1616 PF01208 Uroporphyrinogen decarboxylase (URO-D) ABED_1617 PF03350 ABED_1617 ABED_1618 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABED_1618 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABED_1619 PF00521 DNA gyrase/topoisomerase IV, subunit A ABED_1619 PF03989 DNA gyrase C-terminal domain, beta-propeller ABED_1620 PF04325 Protein of unknown function (DUF465) ABED_1621 PF01960 ArgJ family ABED_1622 PF02080 TrkA-C domain ABED_1622 PF02254 TrkA-N domain ABED_1623 PF00830 Ribosomal L28 family ABED_1624 PF00534 Glycosyl transferases group 1 ABED_1625 PF13242 HAD-hyrolase-like ABED_1626 PF01370 NAD dependent epimerase/dehydratase family ABED_1627 PF00294 pfkB family carbohydrate kinase ABED_1627 PF01467 Cytidylyltransferase ABED_1628 PF13580 SIS domain ABED_1629 PF00884 Sulfatase ABED_1630 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABED_1632 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABED_1633 PF00535 Glycosyl transferase family 2 ABED_1634 PF01522 Polysaccharide deacetylase ABED_1635 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family ABED_1636 PF00534 Glycosyl transferases group 1 ABED_1636 PF13439 Glycosyltransferase Family 4 ABED_1637 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_1638 PF04932 ABED_1638 ABED_1640 PF03062 ABED_1640 ABED_1642 PF03062 ABED_1642 ABED_1644 PF03062 ABED_1644 ABED_1645 PF00535 Glycosyl transferase family 2 ABED_1646 PF00535 Glycosyl transferase family 2 ABED_1647 PF00535 Glycosyl transferase family 2 ABED_1648 PF16363 ABED_1648 ABED_1649 PF04321 RmlD substrate binding domain ABED_1650 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ABED_1651 PF00483 Nucleotidyl transferase ABED_1652 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABED_1653 PF01163 RIO1 family ABED_1654 PF03279 ABED_1654 ABED_1655 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABED_1656 PF02541 Ppx/GppA phosphatase family ABED_1657 PF00037 4Fe-4S binding domain ABED_1658 PF00459 Inositol monophosphatase family ABED_1659 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_1659 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABED_1660 PF00310 Glutamine amidotransferases class-II ABED_1660 PF01493 GXGXG motif ABED_1660 PF01645 Conserved region in glutamate synthase ABED_1660 PF04898 Glutamate synthase central domain ABED_1661 PF07264 Etoposide-induced protein 2 ABED_1662 PF13186 Iron-sulfur cluster-binding domain ABED_1663 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1663 PF02743 Cache domain ABED_1664 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1666 PF00263 ABED_1666 ABED_1666 PF03958 Bacterial type II/III secretion system short domain ABED_1667 PF01205 Uncharacterized protein family UPF0029 ABED_1667 PF09186 Domain of unknown function (DUF1949) ABED_1668 PF01479 S4 domain ABED_1668 PF01728 FtsJ-like methyltransferase ABED_1669 PF01687 Riboflavin kinase ABED_1669 PF06574 FAD synthetase ABED_1670 PF13649 Methyltransferase domain ABED_1671 PF00578 AhpC/TSA family ABED_1672 PF15436 ABED_1672 ABED_1673 PF01565 FAD binding domain ABED_1673 PF02913 FAD linked oxidases, C-terminal domain ABED_1674 PF03631 ABED_1674 ABED_1676 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABED_1677 PF00892 EamA-like transporter family ABED_1678 PF00793 DAHP synthetase I family ABED_1679 PF00885 6,7-dimethyl-8-ribityllumazine synthase ABED_1680 PF01029 NusB family ABED_1681 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ABED_1682 PF00005 ABC transporter ABED_1683 PF16149 ABED_1683 ABED_1684 PF04023 FeoA domain ABED_1685 PF02421 Ferrous iron transport protein B ABED_1685 PF07664 ABED_1685 ABED_1685 PF07670 Nucleoside recognition ABED_1688 PF03929 ABED_1688 ABED_1690 PF00122 E1-E2 ATPase ABED_1690 PF00403 Heavy-metal-associated domain ABED_1690 PF00702 haloacid dehalogenase-like hydrolase ABED_1691 PF01022 Bacterial regulatory protein, arsR family ABED_1692 PF00593 TonB dependent receptor ABED_1692 PF07715 TonB-dependent Receptor Plug Domain ABED_1694 PF00873 AcrB/AcrD/AcrF family ABED_1696 PF02321 Outer membrane efflux protein ABED_1697 PF00313 'Cold-shock' DNA-binding domain ABED_1699 PF00072 Response regulator receiver domain ABED_1699 PF00486 Transcriptional regulatory protein, C terminal ABED_1700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1700 PF07695 ABED_1700 ABED_1701 PF03594 ABED_1701 ABED_1702 PF03795 YCII-related domain ABED_1704 PF00623 RNA polymerase Rpb1, domain 2 ABED_1704 PF04983 RNA polymerase Rpb1, domain 3 ABED_1704 PF04997 RNA polymerase Rpb1, domain 1 ABED_1704 PF04998 RNA polymerase Rpb1, domain 5 ABED_1704 PF05000 RNA polymerase Rpb1, domain 4 ABED_1705 PF00562 RNA polymerase Rpb2, domain 6 ABED_1705 PF04560 RNA polymerase Rpb2, domain 7 ABED_1705 PF04561 RNA polymerase Rpb2, domain 2 ABED_1705 PF04563 RNA polymerase beta subunit ABED_1705 PF04565 RNA polymerase Rpb2, domain 3 ABED_1705 PF10385 RNA polymerase beta subunit external 1 domain ABED_1706 PF00542 Ribosomal protein L7/L12 C-terminal domain ABED_1706 PF16320 ABED_1706 ABED_1707 PF00466 Ribosomal protein L10 ABED_1708 PF00687 Ribosomal protein L1p/L10e family ABED_1709 PF00298 Ribosomal protein L11, RNA binding domain ABED_1709 PF03946 Ribosomal protein L11, N-terminal domain ABED_1710 PF02357 Transcription termination factor nusG ABED_1711 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ABED_1712 PF00471 Ribosomal protein L33 ABED_1713 PF00009 Elongation factor Tu GTP binding domain ABED_1713 PF03143 Elongation factor Tu C-terminal domain ABED_1713 PF03144 Elongation factor Tu domain 2 ABED_1714 PF08245 Mur ligase middle domain ABED_1715 PF00953 Glycosyl transferase family 4 ABED_1715 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ABED_1716 PF01676 Metalloenzyme superfamily ABED_1716 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ABED_1717 PF00005 ABC transporter ABED_1718 PF00905 Penicillin binding protein transpeptidase domain ABED_1718 PF00912 Transglycosylase ABED_1719 PF00120 Glutamine synthetase, catalytic domain ABED_1719 PF03951 Glutamine synthetase, beta-Grasp domain ABED_1720 PF02811 PHP domain ABED_1721 PF02391 MoaE protein ABED_1722 PF02597 ThiS family ABED_1723 PF02621 Menaquinone biosynthesis ABED_1724 PF02673 ABED_1724 ABED_1725 PF03033 Glycosyltransferase family 28 N-terminal domain ABED_1725 PF04101 Glycosyltransferase family 28 C-terminal domain ABED_1726 PF01098 ABED_1726 ABED_1727 PF00905 Penicillin binding protein transpeptidase domain ABED_1727 PF03717 Penicillin-binding Protein dimerisation domain ABED_1728 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABED_1729 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABED_1730 PF00004 ATPase family associated with various cellular activities (AAA) ABED_1730 PF02861 Clp amino terminal domain ABED_1730 PF07724 AAA domain (Cdc48 subfamily) ABED_1730 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_1731 PF02617 ATP-dependent Clp protease adaptor protein ClpS ABED_1732 PF13500 AAA domain ABED_1733 PF03328 HpcH/HpaI aldolase/citrate lyase family ABED_1734 PF00501 AMP-binding enzyme ABED_1734 PF03328 HpcH/HpaI aldolase/citrate lyase family ABED_1734 PF13193 AMP-binding enzyme C-terminal domain ABED_1735 PF01575 MaoC like domain ABED_1736 PF03328 HpcH/HpaI aldolase/citrate lyase family ABED_1737 PF05681 ABED_1737 ABED_1737 PF05683 Fumarase C-terminus ABED_1739 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1739 PF08376 Nitrate and nitrite sensing ABED_1740 PF02040 ABED_1740 ABED_1741 PF01022 Bacterial regulatory protein, arsR family ABED_1742 PF13192 Thioredoxin domain ABED_1743 PF03773 ABED_1743 ABED_1744 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABED_1745 PF01613 Flavin reductase like domain ABED_1746 PF07690 Major Facilitator Superfamily ABED_1747 PF00771 FHIPEP family ABED_1749 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_1750 PF13181 Tetratricopeptide repeat ABED_1751 PF01312 FlhB HrpN YscU SpaS Family ABED_1752 PF01311 ABED_1752 ABED_1753 PF02120 Flagellar hook-length control protein FliK ABED_1754 PF00460 Flagella basal body rod protein ABED_1754 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_1755 PF02049 ABED_1755 ABED_1757 PF10609 ParA/MinD ATPase like ABED_1758 PF00448 SRP54-type protein, GTPase domain ABED_1761 PF10135 ABED_1761 ABED_1762 PF01052 Surface presentation of antigens (SPOA) ABED_1764 PF13174 Tetratricopeptide repeat ABED_1764 PF13181 Tetratricopeptide repeat ABED_1766 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_1767 PF00460 Flagella basal body rod protein ABED_1767 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_1768 PF03963 ABED_1768 ABED_1769 PF01052 Surface presentation of antigens (SPOA) ABED_1770 PF02108 ABED_1770 ABED_1771 PF01706 FliG C-terminal domain ABED_1771 PF14841 FliG middle domain ABED_1771 PF14842 FliG N-terminal domain ABED_1772 PF01514 Secretory protein of YscJ/FliF family ABED_1772 PF08345 ABED_1772 ABED_1773 PF00460 Flagella basal body rod protein ABED_1774 PF00460 Flagella basal body rod protein ABED_1774 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_1776 PF00072 Response regulator receiver domain ABED_1777 PF00460 Flagella basal body rod protein ABED_1777 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_1780 PF01782 RimM N-terminal domain ABED_1781 PF13083 KH domain ABED_1782 PF00886 Ribosomal protein S16 ABED_1783 PF00448 SRP54-type protein, GTPase domain ABED_1783 PF02881 SRP54-type protein, helical bundle domain ABED_1783 PF02978 Signal peptide binding domain ABED_1784 PF00849 RNA pseudouridylate synthase ABED_1785 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ABED_1786 PF02591 Putative zinc ribbon domain ABED_1787 PF01784 NIF3 (NGG1p interacting factor 3) ABED_1788 PF02091 Glycyl-tRNA synthetase alpha subunit ABED_1789 PF00462 Glutaredoxin ABED_1790 PF00731 AIR carboxylase ABED_1791 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABED_1792 PF01136 ABED_1792 ABED_1793 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_1793 PF17200 ABED_1793 ABED_1794 PF13476 AAA domain ABED_1795 PF01513 ATP-NAD kinase ABED_1796 PF00009 Elongation factor Tu GTP binding domain ABED_1796 PF00679 Elongation factor G C-terminus ABED_1796 PF03144 Elongation factor Tu domain 2 ABED_1796 PF03764 Elongation factor G, domain IV ABED_1796 PF14492 Elongation Factor G, domain II ABED_1797 PF00177 Ribosomal protein S7p/S5e ABED_1798 PF00164 Ribosomal protein S12/S23 ABED_1799 PF12146 Putative lysophospholipase ABED_1800 PF07690 Major Facilitator Superfamily ABED_1801 PF00593 TonB dependent receptor ABED_1801 PF07715 TonB-dependent Receptor Plug Domain ABED_1803 PF05940 ABED_1803 ABED_1804 PF00005 ABC transporter ABED_1805 PF00528 Binding-protein-dependent transport system inner membrane component ABED_1807 PF13231 ABED_1807 ABED_1808 PF00117 Glutamine amidotransferase class-I ABED_1809 PF00440 Bacterial regulatory proteins, tetR family ABED_1809 PF14246 AefR-like transcriptional repressor, C-terminal region ABED_1810 PF00106 short chain dehydrogenase ABED_1811 PF12706 Beta-lactamase superfamily domain ABED_1812 PF13343 Bacterial extracellular solute-binding protein ABED_1813 PF00528 Binding-protein-dependent transport system inner membrane component ABED_1814 PF00005 ABC transporter ABED_1814 PF08402 TOBE domain ABED_1815 PF12833 Helix-turn-helix domain ABED_1816 PF00593 TonB dependent receptor ABED_1816 PF07715 TonB-dependent Receptor Plug Domain ABED_1818 PF03929 ABED_1818 ABED_1820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABED_1820 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABED_1821 PF05343 M42 glutamyl aminopeptidase ABED_1823 PF07366 SnoaL-like polyketide cyclase ABED_1824 PF00575 S1 RNA binding domain ABED_1824 PF09371 Tex-like protein N-terminal domain ABED_1824 PF12836 Helix-hairpin-helix motif ABED_1824 PF16921 ABED_1824 ABED_1826 PF01042 Endoribonuclease L-PSP ABED_1827 PF00293 NUDIX domain ABED_1828 PF06445 GyrI-like small molecule binding domain ABED_1828 PF12833 Helix-turn-helix domain ABED_1829 PF00155 Aminotransferase class I and II ABED_1831 PF09335 ABED_1831 ABED_1832 PF01245 Ribosomal protein L19 ABED_1833 PF01746 tRNA (Guanine-1)-methyltransferase ABED_1835 PF01717 Cobalamin-independent synthase, Catalytic domain ABED_1835 PF08267 Cobalamin-independent synthase, N-terminal domain ABED_1836 PF00291 Pyridoxal-phosphate dependent enzyme ABED_1837 PF00119 ATP synthase A chain ABED_1838 PF02581 Thiamine monophosphate synthase/TENI ABED_1839 PF05538 ABED_1839 ABED_1840 PF02152 Dihydroneopterin aldolase ABED_1841 PF02660 ABED_1841 ABED_1842 PF02445 Quinolinate synthetase A protein ABED_1843 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABED_1843 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABED_1844 PF01368 DHH family ABED_1844 PF02272 DHHA1 domain ABED_1845 PF01551 Peptidase family M23 ABED_1846 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ABED_1848 PF00288 GHMP kinases N terminal domain ABED_1848 PF08544 GHMP kinases C terminal ABED_1849 PF04296 Protein of unknown function (DUF448) ABED_1850 PF00009 Elongation factor Tu GTP binding domain ABED_1850 PF04760 Translation initiation factor IF-2, N-terminal region ABED_1850 PF11987 Translation-initiation factor 2 ABED_1851 PF02033 Ribosome-binding factor A ABED_1852 PF02576 Uncharacterised BCR, YhbC family COG0779 ABED_1852 PF17384 ABED_1852 ABED_1853 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABED_1854 PF01132 Elongation factor P (EF-P) OB domain ABED_1854 PF08207 Elongation factor P (EF-P) KOW-like domain ABED_1854 PF09285 Elongation factor P, C-terminal ABED_1855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABED_1855 PF01842 ACT domain ABED_1855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABED_1856 PF00575 S1 RNA binding domain ABED_1857 PF02401 LytB protein ABED_1858 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABED_1859 PF01588 Putative tRNA binding domain ABED_1859 PF03147 Ferredoxin-fold anticodon binding domain ABED_1859 PF03484 tRNA synthetase B5 domain ABED_1860 PF01409 tRNA synthetases class II core domain (F) ABED_1860 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ABED_1861 PF01230 HIT domain ABED_1862 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABED_1863 PF00109 Beta-ketoacyl synthase, N-terminal domain ABED_1863 PF02801 Beta-ketoacyl synthase, C-terminal domain ABED_1864 PF00550 Phosphopantetheine attachment site ABED_1865 PF13561 Enoyl-(Acyl carrier protein) reductase ABED_1866 PF13394 4Fe-4S single cluster domain ABED_1867 PF01242 6-pyruvoyl tetrahydropterin synthase ABED_1868 PF06508 Queuosine biosynthesis protein QueC ABED_1870 PF04452 RNA methyltransferase ABED_1871 PF00034 Cytochrome c ABED_1872 PF00032 Cytochrome b(C-terminal)/b6/petD ABED_1872 PF00033 Cytochrome b(N-terminal)/b6/petB ABED_1873 PF00355 Rieske [2Fe-2S] domain ABED_1874 PF00291 Pyridoxal-phosphate dependent enzyme ABED_1874 PF14821 Threonine synthase N terminus ABED_1875 PF00696 Amino acid kinase family ABED_1876 PF00580 UvrD/REP helicase N-terminal domain ABED_1876 PF13361 UvrD-like helicase C-terminal domain ABED_1877 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABED_1878 PF00472 RF-1 domain ABED_1878 PF03462 PCRF domain ABED_1879 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABED_1880 PF12705 PD-(D/E)XK nuclease superfamily ABED_1883 PF13179 ABED_1883 ABED_1884 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABED_1884 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ABED_1885 PF05545 ABED_1885 ABED_1886 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO ABED_1887 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABED_1888 PF01668 SmpB protein ABED_1889 PF00288 GHMP kinases N terminal domain ABED_1890 PF01509 TruB family pseudouridylate synthase (N terminal domain) ABED_1891 PF00580 UvrD/REP helicase N-terminal domain ABED_1891 PF13361 UvrD-like helicase C-terminal domain ABED_1892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_1892 PF03466 LysR substrate binding domain ABED_1893 PF04055 Radical SAM superfamily ABED_1893 PF16199 ABED_1893 ABED_1894 PF00156 Phosphoribosyl transferase domain ABED_1894 PF13537 Glutamine amidotransferase domain ABED_1895 PF01113 Dihydrodipicolinate reductase, N-terminus ABED_1895 PF05173 Dihydrodipicolinate reductase, C-terminus ABED_1896 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_1897 PF00085 Thioredoxin ABED_1898 PF01411 tRNA synthetases class II (A) ABED_1898 PF02272 DHHA1 domain ABED_1898 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABED_1899 PF04402 Protein of unknown function (DUF541) ABED_1900 PF07690 Major Facilitator Superfamily ABED_1903 PF00512 His Kinase A (phospho-acceptor) domain ABED_1903 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_1904 PF00072 Response regulator receiver domain ABED_1904 PF00486 Transcriptional regulatory protein, C terminal ABED_1905 PF13180 PDZ domain ABED_1905 PF13365 Trypsin-like peptidase domain ABED_1906 PF00920 Dehydratase family ABED_1909 PF00005 ABC transporter ABED_1910 PF02687 ABED_1910 ABED_1911 PF01258 Prokaryotic dksA/traR C4-type zinc finger ABED_1912 PF01142 tRNA pseudouridine synthase D (TruD) ABED_1914 PF09976 Tetratricopeptide repeat ABED_1915 PF03572 Peptidase family S41 ABED_1915 PF13180 PDZ domain ABED_1916 PF01259 SAICAR synthetase ABED_1917 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ABED_1918 PF13507 CobB/CobQ-like glutamine amidotransferase domain ABED_1920 PF01553 Acyltransferase ABED_1921 PF02537 ABED_1921 ABED_1922 PF02416 mttA/Hcf106 family ABED_1923 PF02416 mttA/Hcf106 family ABED_1924 PF00750 tRNA synthetases class I (R) ABED_1924 PF03485 Arginyl tRNA synthetase N terminal domain ABED_1924 PF05746 DALR anticodon binding domain ABED_1925 PF02410 Oligomerisation domain ABED_1926 PF01467 Cytidylyltransferase ABED_1927 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABED_1927 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABED_1928 PF00162 Phosphoglycerate kinase ABED_1929 PF00121 Triosephosphate isomerase ABED_1930 PF13561 Enoyl-(Acyl carrier protein) reductase ABED_1931 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABED_1931 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABED_1932 PF00800 Prephenate dehydratase ABED_1932 PF01817 Chorismate mutase type II ABED_1932 PF01842 ACT domain ABED_1933 PF00155 Aminotransferase class I and II ABED_1934 PF02779 Transketolase, pyrimidine binding domain ABED_1934 PF02780 Transketolase, C-terminal domain ABED_1934 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ABED_1935 PF00034 Cytochrome c ABED_1935 PF03150 Di-haem cytochrome c peroxidase ABED_1936 PF02545 Maf-like protein ABED_1937 PF02558 Ketopantoate reductase PanE/ApbA ABED_1937 PF08546 Ketopantoate reductase PanE/ApbA C terminal ABED_1939 PF00877 NlpC/P60 family ABED_1940 PF00027 Cyclic nucleotide-binding domain ABED_1940 PF13545 Crp-like helix-turn-helix domain ABED_1941 PF11756 ABED_1941 ABED_1942 PF03167 Uracil DNA glycosylase superfamily ABED_1943 PF00171 Aldehyde dehydrogenase family ABED_1944 PF00205 Thiamine pyrophosphate enzyme, central domain ABED_1944 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABED_1944 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABED_1945 PF04011 LemA family ABED_1946 PF04536 TLP18 ABED_1947 PF04536 TLP18 ABED_1948 PF13419 Haloacid dehalogenase-like hydrolase ABED_1949 PF00210 Ferritin-like domain ABED_1950 PF13387 ABED_1950 ABED_1952 PF07690 Major Facilitator Superfamily ABED_1954 PF00990 GGDEF domain ABED_1955 PF16576 ABED_1955 ABED_1956 PF00873 AcrB/AcrD/AcrF family ABED_1957 PF02321 Outer membrane efflux protein ABED_1958 PF07715 TonB-dependent Receptor Plug Domain ABED_1959 PF04773 FecR protein ABED_1959 PF16220 ABED_1959 ABED_1959 PF16344 ABED_1959 ABED_1960 PF04542 Sigma-70 region 2 ABED_1960 PF08281 Sigma-70, region 4 ABED_1962 PF03486 HI0933-like protein ABED_1964 PF01053 Cys/Met metabolism PLP-dependent enzyme ABED_1965 PF02082 Transcriptional regulator ABED_1966 PF00291 Pyridoxal-phosphate dependent enzyme ABED_1967 PF09834 ABED_1967 ABED_1968 PF01507 Phosphoadenosine phosphosulfate reductase family ABED_1969 PF01507 Phosphoadenosine phosphosulfate reductase family ABED_1970 PF00009 Elongation factor Tu GTP binding domain ABED_1971 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABED_1971 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABED_1972 PF03435 Saccharopine dehydrogenase ABED_1972 PF16653 ABED_1972 ABED_1973 PF00266 Aminotransferase class-V ABED_1974 PF13519 von Willebrand factor type A domain ABED_1976 PF02654 ABED_1976 ABED_1977 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ABED_1978 PF13472 GDSL-like Lipase/Acylhydrolase family ABED_1980 PF00939 Sodium:sulfate symporter transmembrane region ABED_1981 PF01925 ABED_1981 ABED_1982 PF00085 Thioredoxin ABED_1982 PF02683 ABED_1982 ABED_1982 PF11412 Disulphide bond corrector protein DsbC ABED_1983 PF08443 RimK-like ATP-grasp domain ABED_1984 PF05618 Putative ATP-dependant zinc protease ABED_1986 PF00563 EAL domain ABED_1986 PF00990 GGDEF domain ABED_1987 PF02666 ABED_1987 ABED_1989 PF03562 MltA specific insert domain ABED_1989 PF06725 3D domain ABED_1990 PF00012 Hsp70 protein ABED_1991 PF01025 GrpE ABED_1993 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP ABED_1994 PF01416 tRNA pseudouridine synthase ABED_1995 PF03739 ABED_1995 ABED_1996 PF01478 Type IV leader peptidase family ABED_1997 PF01255 Putative undecaprenyl diphosphate synthase ABED_1998 PF02441 Flavoprotein ABED_1998 PF04127 DNA / pantothenate metabolism flavoprotein ABED_1999 PF12804 MobA-like NTP transferase domain ABED_1999 PF14602 Hexapeptide repeat of succinyl-transferase ABED_2000 PF12796 Ankyrin repeats (3 copies) ABED_2001 PF00271 Helicase conserved C-terminal domain ABED_2001 PF12513 Mitochondrial degradasome RNA helicase subunit C terminal ABED_2002 PF05958 tRNA (Uracil-5-)-methyltransferase ABED_2003 PF00293 NUDIX domain ABED_2005 PF00294 pfkB family carbohydrate kinase ABED_2005 PF05014 Nucleoside 2-deoxyribosyltransferase ABED_2006 PF06508 Queuosine biosynthesis protein QueC ABED_2010 PF03235 ABED_2010 ABED_2010 PF07510 ABED_2010 ABED_2013 PF08722 TnsA endonuclease N terminal ABED_2014 PF00665 Integrase core domain ABED_2014 PF09299 Mu transposase, C-terminal ABED_2015 PF05621 ABED_2015 ABED_2016 PF06527 ABED_2016 ABED_2018 PF00589 Phage integrase family ABED_2018 PF02899 Phage integrase, N-terminal SAM-like domain ABED_2020 PF01134 Glucose inhibited division protein A ABED_2020 PF13932 GidA associated domain 3 ABED_2021 PF00677 Lumazine binding domain ABED_2022 PF04085 rod shape-determining protein MreC ABED_2023 PF06723 MreB/Mbl protein ABED_2024 PF06689 ClpX C4-type zinc finger ABED_2024 PF07724 AAA domain (Cdc48 subfamily) ABED_2024 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_2025 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_2025 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ABED_2026 PF07977 FabA-like domain ABED_2027 PF02684 ABED_2027 ABED_2028 PF02677 ABED_2028 ABED_2030 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_2031 PF01261 Xylose isomerase-like TIM barrel ABED_2032 PF02321 Outer membrane efflux protein ABED_2033 PF00873 AcrB/AcrD/AcrF family ABED_2034 PF16576 ABED_2034 ABED_2035 PF00440 Bacterial regulatory proteins, tetR family ABED_2036 PF07690 Major Facilitator Superfamily ABED_2037 PF00916 ABED_2037 ABED_2037 PF01740 STAS domain ABED_2038 PF08238 Sel1 repeat ABED_2041 PF00004 ATPase family associated with various cellular activities (AAA) ABED_2043 PF02621 Menaquinone biosynthesis ABED_2044 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ABED_2045 PF01131 DNA topoisomerase ABED_2045 PF01751 Toprim domain ABED_2045 PF13368 ABED_2045 ABED_2046 PF12850 Calcineurin-like phosphoesterase superfamily domain ABED_2047 PF04055 Radical SAM superfamily ABED_2047 PF06968 Biotin and Thiamin Synthesis associated domain ABED_2048 PF11741 AMIN domain ABED_2050 PF00113 Enolase, C-terminal TIM barrel domain ABED_2050 PF03952 Enolase, N-terminal domain ABED_2051 PF00154 recA bacterial DNA recombination protein ABED_2053 PF02719 Polysaccharide biosynthesis protein ABED_2054 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABED_2055 PF02348 Cytidylyltransferase ABED_2056 PF03102 NeuB family ABED_2056 PF08666 SAF domain ABED_2057 PF04101 Glycosyltransferase family 28 C-terminal domain ABED_2059 PF13847 Methyltransferase domain ABED_2060 PF13535 ATP-grasp domain ABED_2061 PF04991 ABED_2061 ABED_2062 PF13847 Methyltransferase domain ABED_2063 PF01973 ABED_2063 ABED_2064 PF00669 Bacterial flagellin N-terminal helical region ABED_2064 PF00700 Bacterial flagellin C-terminal helical region ABED_2065 PF00669 Bacterial flagellin N-terminal helical region ABED_2065 PF00700 Bacterial flagellin C-terminal helical region ABED_2066 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ABED_2066 PF12801 ABED_2066 ABED_2066 PF13746 4Fe-4S dicluster domain ABED_2067 PF00117 Glutamine amidotransferase class-I ABED_2067 PF06418 CTP synthase N-terminus ABED_2068 PF01368 DHH family ABED_2068 PF02272 DHHA1 domain ABED_2072 PF01965 DJ-1/PfpI family ABED_2073 PF02811 PHP domain ABED_2073 PF07733 Bacterial DNA polymerase III alpha subunit ABED_2073 PF14579 Helix-hairpin-helix motif ABED_2074 PF01975 Survival protein SurE ABED_2076 PF04359 Protein of unknown function (DUF493) ABED_2077 PF01967 MoaC family ABED_2078 PF01165 Ribosomal protein S21 ABED_2079 PF01027 Inhibitor of apoptosis-promoting Bax1 ABED_2081 PF08242 Methyltransferase domain ABED_2082 PF03840 Preprotein translocase SecG subunit ABED_2083 PF01765 Ribosome recycling factor ABED_2084 PF00156 Phosphoribosyl transferase domain ABED_2085 PF06271 ABED_2085 ABED_2086 PF12832 MFS_1 like family ABED_2087 PF01544 CorA-like Mg2+ transporter protein ABED_2093 PF00239 Resolvase, N terminal domain ABED_2094 PF03883 ABED_2094 ABED_2095 PF00589 Phage integrase family ABED_2096 PF00589 Phage integrase family ABED_2097 PF03883 ABED_2097 ABED_2098 PF12836 Helix-hairpin-helix motif ABED_2099 PF10670 ABED_2099 ABED_2100 PF00149 Calcineurin-like phosphoesterase ABED_2101 PF00011 Hsp20/alpha crystallin family ABED_2103 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_2103 PF17201 ABED_2103 ABED_2104 PF00581 Rhodanese-like domain ABED_2104 PF00899 ThiF family ABED_2105 PF01841 Transglutaminase-like superfamily ABED_2105 PF08379 ABED_2105 ABED_2105 PF09899 ABED_2105 ABED_2106 PF04168 ABED_2106 ABED_2106 PF14403 ABED_2106 ABED_2107 PF01841 Transglutaminase-like superfamily ABED_2107 PF08379 ABED_2107 ABED_2108 PF00005 ABC transporter ABED_2108 PF12857 ABED_2108 ABED_2109 PF00528 Binding-protein-dependent transport system inner membrane component ABED_2110 PF00528 Binding-protein-dependent transport system inner membrane component ABED_2111 PF00291 Pyridoxal-phosphate dependent enzyme ABED_2112 PF00563 EAL domain ABED_2113 PF02597 ThiS family ABED_2114 PF13531 Bacterial extracellular solute-binding protein ABED_2115 PF00291 Pyridoxal-phosphate dependent enzyme ABED_2116 PF00528 Binding-protein-dependent transport system inner membrane component ABED_2117 PF00005 ABC transporter ABED_2118 PF13379 NMT1-like family ABED_2119 PF00296 Luciferase-like monooxygenase ABED_2120 PF09084 NMT1/THI5 like ABED_2121 PF04909 Amidohydrolase ABED_2122 PF00005 ABC transporter ABED_2123 PF00528 Binding-protein-dependent transport system inner membrane component ABED_2124 PF00296 Luciferase-like monooxygenase ABED_2125 PF09084 NMT1/THI5 like ABED_2126 PF02082 Transcriptional regulator ABED_2127 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ABED_2128 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ABED_2129 PF04168 ABED_2129 ABED_2130 PF14403 ABED_2130 ABED_2131 PF00009 Elongation factor Tu GTP binding domain ABED_2131 PF00679 Elongation factor G C-terminus ABED_2131 PF03144 Elongation factor Tu domain 2 ABED_2132 PF04143 ABED_2132 ABED_2133 PF01206 Sulfurtransferase TusA ABED_2136 PF03929 ABED_2136 ABED_2137 PF00593 TonB dependent receptor ABED_2137 PF07715 TonB-dependent Receptor Plug Domain ABED_2138 PF04773 FecR protein ABED_2138 PF16344 ABED_2138 ABED_2139 PF04542 Sigma-70 region 2 ABED_2139 PF08281 Sigma-70, region 4 ABED_2140 PF00990 GGDEF domain ABED_2140 PF02743 Cache domain ABED_2140 PF08447 PAS fold ABED_2140 PF13188 PAS domain ABED_2140 PF13426 PAS domain ABED_2141 PF00884 Sulfatase ABED_2141 PF08019 ABED_2141 ABED_2142 PF01569 PAP2 superfamily ABED_2143 PF01219 Prokaryotic diacylglycerol kinase ABED_2144 PF09086 Domain of unknown function (DUF1924) ABED_2145 PF09626 Dihaem cytochrome c ABED_2146 PF01292 Prokaryotic cytochrome b561 ABED_2147 PF09626 Dihaem cytochrome c ABED_2149 PF00072 Response regulator receiver domain ABED_2149 PF00486 Transcriptional regulatory protein, C terminal ABED_2150 PF00672 HAMP domain ABED_2150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_2151 PF08241 Methyltransferase domain ABED_2152 PF12833 Helix-turn-helix domain ABED_2153 PF01966 HD domain ABED_2154 PF02511 Thymidylate synthase complementing protein ABED_2155 PF03458 ABED_2155 ABED_2157 PF00551 Formyl transferase ABED_2158 PF02075 Crossover junction endodeoxyribonuclease RuvC