ABED_0001 SM00382 ATPases associated with a variety of cellular activities ABED_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain ABED_0002 SM00480 DNA polymerase III beta subunit ABED_0003 SM00387 Histidine kinase-like ATPases ABED_0003 SM00433 TopoisomeraseII ABED_0009 SM00382 ATPases associated with a variety of cellular activities ABED_0019 SM00998 Adenylosuccinate lyase C-terminus ABED_0027 SM00829 Enoylreductase ABED_0030 SM00845 GatB domain ABED_0034 SM00448 cheY-homologous receiver domain ABED_0034 SM00862 Transcriptional regulatory protein, C terminal ABED_0035 SM00091 PAS domain ABED_0035 SM00387 Histidine kinase-like ATPases ABED_0041 SM00878 Biotin carboxylase C-terminal domain ABED_0042 SM00487 DEAD-like helicases superfamily ABED_0042 SM00490 helicase superfamily c-terminal domain ABED_0049 SM00382 ATPases associated with a variety of cellular activities ABED_0050 SM00363 S4 RNA-binding domain ABED_0051 SM00116 Domain in cystathionine beta-synthase and other proteins. ABED_0052 SM00849 Metallo-beta-lactamase superfamily ABED_0053 SM00650 Ribosomal RNA adenine dimethylases ABED_0059 SM00360 RNA recognition motif ABED_0060 SM00448 cheY-homologous receiver domain ABED_0060 SM00862 Transcriptional regulatory protein, C terminal ABED_0061 SM00387 Histidine kinase-like ATPases ABED_0061 SM00388 His Kinase A (phosphoacceptor) domain ABED_0066 SM00867 YceI-like domain ABED_0071 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ABED_0075 SM00450 Rhodanese Homology Domain ABED_0083 SM00937 ABED_0083 ABED_0086 SM00052 Putative diguanylate phosphodiesterase ABED_0086 SM00267 diguanylate cyclase ABED_0089 SM00382 ATPases associated with a variety of cellular activities ABED_0092 SM00448 cheY-homologous receiver domain ABED_0092 SM00862 Transcriptional regulatory protein, C terminal ABED_0093 SM00387 Histidine kinase-like ATPases ABED_0093 SM00388 His Kinase A (phosphoacceptor) domain ABED_0101 SM00382 ATPases associated with a variety of cellular activities ABED_0109 SM01018 B12 binding domain ABED_0111 SM00244 prohibitin homologues ABED_0119 SM00448 cheY-homologous receiver domain ABED_0121 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain ABED_0123 SM00788 Adenylosuccinate synthetase ABED_0126 SM00867 YceI-like domain ABED_0127 SM00347 helix_turn_helix multiple antibiotic resistance protein ABED_0128 SM00867 YceI-like domain ABED_0132 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABED_0139 SM00671 Sel1-like repeats. ABED_0146 SM00967 RNA 2'-O ribose methyltransferase substrate binding ABED_0162 SM00342 helix_turn_helix, arabinose operon control protein ABED_0162 SM00871 Bacterial transcription activator, effector binding domain ABED_0163 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0164 SM00487 DEAD-like helicases superfamily ABED_0164 SM00490 helicase superfamily c-terminal domain ABED_0166 SM00347 helix_turn_helix multiple antibiotic resistance protein ABED_0167 SM00861 Transketolase, pyrimidine binding domain ABED_0173 SM00422 helix_turn_helix, mercury resistance ABED_0177 SM00563 Phosphate acyltransferases ABED_0178 SM00563 Phosphate acyltransferases ABED_0182 SM00248 ankyrin repeats ABED_0183 SM00938 Nitrogen regulatory protein P-II ABED_0199 SM00729 Elongator protein 3, MiaB family, Radical SAM ABED_0204 SM00732 Likely ribonuclease with RNase H fold. ABED_0220 SM00955 ABED_0220 ABED_0227 SM00840 ABED_0227 ABED_0228 SM00316 Ribosomal protein S1-like RNA-binding domain ABED_0230 SM00729 Elongator protein 3, MiaB family, Radical SAM ABED_0236 SM00947 Carbonic anhydrase ABED_0247 SM00862 Transcriptional regulatory protein, C terminal ABED_0249 SM00782 PhnA Zinc-Ribbon ABED_0268 SM00382 ATPases associated with a variety of cellular activities ABED_0270 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABED_0271 SM00357 Cold shock protein domain ABED_0271 SM00382 ATPases associated with a variety of cellular activities ABED_0271 SM00959 Rho termination factor, N-terminal domain ABED_0274 SM00562 ABED_0274 ABED_0292 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABED_0294 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ABED_0307 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0307 SM01049 ABED_0307 ABED_0315 SM00342 helix_turn_helix, arabinose operon control protein ABED_0325 SM00052 Putative diguanylate phosphodiesterase ABED_0325 SM00267 diguanylate cyclase ABED_0328 SM00320 WD40 repeats ABED_0333 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ABED_0337 SM00387 Histidine kinase-like ATPases ABED_0337 SM01049 ABED_0337 ABED_0338 SM00448 cheY-homologous receiver domain ABED_0338 SM00862 Transcriptional regulatory protein, C terminal ABED_0342 SM00100 Cyclic nucleotide-monophosphate binding domain ABED_0342 SM00419 helix_turn_helix, cAMP Regulatory protein ABED_0344 SM00729 Elongator protein 3, MiaB family, Radical SAM ABED_0345 SM01387 ABED_0345 ABED_0348 SM00881 CoA binding domain ABED_0349 SM00387 Histidine kinase-like ATPases ABED_0349 SM00388 His Kinase A (phosphoacceptor) domain ABED_0350 SM00448 cheY-homologous receiver domain ABED_0350 SM00862 Transcriptional regulatory protein, C terminal ABED_0369 SM01323 ABED_0369 ABED_0380 SM00487 DEAD-like helicases superfamily ABED_0380 SM00490 helicase superfamily c-terminal domain ABED_0381 SM00563 Phosphate acyltransferases ABED_0385 SM00487 DEAD-like helicases superfamily ABED_0385 SM00490 helicase superfamily c-terminal domain ABED_0385 SM00982 ABED_0385 ABED_0385 SM01058 CarD-like/TRCF domain ABED_0389 SM00448 cheY-homologous receiver domain ABED_0389 SM00862 Transcriptional regulatory protein, C terminal ABED_0392 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0393 SM00448 cheY-homologous receiver domain ABED_0394 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABED_0394 SM00091 PAS domain ABED_0395 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABED_0395 SM00091 PAS domain ABED_0395 SM00387 Histidine kinase-like ATPases ABED_0395 SM00388 His Kinase A (phosphoacceptor) domain ABED_0401 SM00260 Two component signalling adaptor domain ABED_0406 SM00883 Chaperonin 10 Kd subunit ABED_0408 SM00387 Histidine kinase-like ATPases ABED_0408 SM00388 His Kinase A (phosphoacceptor) domain ABED_0409 SM00448 cheY-homologous receiver domain ABED_0409 SM00862 Transcriptional regulatory protein, C terminal ABED_0412 SM00867 YceI-like domain ABED_0415 SM00382 ATPases associated with a variety of cellular activities ABED_0427 SM00382 ATPases associated with a variety of cellular activities ABED_0428 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABED_0428 SM00091 PAS domain ABED_0428 SM00448 cheY-homologous receiver domain ABED_0428 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABED_0429 SM00448 cheY-homologous receiver domain ABED_0430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ABED_0430 SM00387 Histidine kinase-like ATPases ABED_0431 SM00917 LeuA allosteric (dimerisation) domain ABED_0433 SM01235 ABED_0433 ABED_0434 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ABED_0434 SM00534 ATPase domain of DNA mismatch repair MUTS family ABED_0439 SM00342 helix_turn_helix, arabinose operon control protein ABED_0444 SM00382 ATPases associated with a variety of cellular activities ABED_0447 SM00267 diguanylate cyclase ABED_0454 SM00838 Elongation factor G C-terminus ABED_0458 SM01400 ABED_0458 ABED_0472 SM00479 ABED_0472 ABED_0473 SM00100 Cyclic nucleotide-monophosphate binding domain ABED_0473 SM00116 Domain in cystathionine beta-synthase and other proteins. ABED_0478 SM00479 ABED_0478 ABED_0479 SM00116 Domain in cystathionine beta-synthase and other proteins. ABED_0482 SM00448 cheY-homologous receiver domain ABED_0482 SM00862 Transcriptional regulatory protein, C terminal ABED_0483 SM00387 Histidine kinase-like ATPases ABED_0483 SM00388 His Kinase A (phosphoacceptor) domain ABED_0483 SM01049 ABED_0483 ABED_0490 SM00912 haemagglutination activity domain ABED_0492 SM00912 haemagglutination activity domain ABED_0493 SM00448 cheY-homologous receiver domain ABED_0493 SM00862 Transcriptional regulatory protein, C terminal ABED_0500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ABED_0502 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0504 SM00155 Phospholipase D. Active site motifs. ABED_0508 SM00852 Probable molybdopterin binding domain ABED_0516 SM00382 ATPases associated with a variety of cellular activities ABED_0518 SM00072 Guanylate kinase homologues. ABED_0519 SM00052 Putative diguanylate phosphodiesterase ABED_0519 SM00267 diguanylate cyclase ABED_0519 SM00448 cheY-homologous receiver domain ABED_0523 SM00382 ATPases associated with a variety of cellular activities ABED_0526 SM00899 ABED_0526 ABED_0528 SM00382 ATPases associated with a variety of cellular activities ABED_0530 SM00316 Ribosomal protein S1-like RNA-binding domain ABED_0532 SM00671 Sel1-like repeats. ABED_0547 SM00382 ATPases associated with a variety of cellular activities ABED_0547 SM00464 Found in ATP-dependent protease La (LON) ABED_0549 SM00226 Low molecular weight phosphatase family ABED_0551 SM00028 Tetratricopeptide repeats ABED_0552 SM00347 helix_turn_helix multiple antibiotic resistance protein ABED_0554 SM00530 Helix-turn-helix XRE-family like proteins ABED_0556 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0557 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABED_0557 SM00091 PAS domain ABED_0557 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0561 SM00878 Biotin carboxylase C-terminal domain ABED_0566 SM00382 ATPases associated with a variety of cellular activities ABED_0570 SM00116 Domain in cystathionine beta-synthase and other proteins. ABED_0571 SM00267 diguanylate cyclase ABED_0573 SM00260 Two component signalling adaptor domain ABED_0573 SM00448 cheY-homologous receiver domain ABED_0577 SM00487 DEAD-like helicases superfamily ABED_0577 SM00490 helicase superfamily c-terminal domain ABED_0578 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0579 SM00478 endonuclease III ABED_0583 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0586 SM00448 cheY-homologous receiver domain ABED_0586 SM00862 Transcriptional regulatory protein, C terminal ABED_0587 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABED_0587 SM00091 PAS domain ABED_0587 SM00387 Histidine kinase-like ATPases ABED_0588 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0588 SM01358 ABED_0588 ABED_0599 SM00646 ABED_0599 ABED_0601 SM00363 S4 RNA-binding domain ABED_0602 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABED_0602 SM00954 Region found in RelA / SpoT proteins ABED_0603 SM01409 ABED_0603 ABED_0614 SM00267 diguanylate cyclase ABED_0615 SM00382 ATPases associated with a variety of cellular activities ABED_0658 SM00382 ATPases associated with a variety of cellular activities ABED_0660 SM00248 ankyrin repeats ABED_0673 SM00448 cheY-homologous receiver domain ABED_0673 SM00862 Transcriptional regulatory protein, C terminal ABED_0675 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ABED_0691 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0692 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ABED_0698 SM01403 ABED_0698 ABED_0702 SM01382 ABED_0702 ABED_0702 SM01383 ABED_0702 ABED_0705 SM00322 K homology RNA-binding domain ABED_0709 SM01374 ABED_0709 ABED_0710 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ABED_0720 SM00316 Ribosomal protein S1-like RNA-binding domain ABED_0721 SM00986 Uracil DNA glycosylase superfamily ABED_0721 SM00987 UreE urease accessory protein, C-terminal domain ABED_0724 SM00260 Two component signalling adaptor domain ABED_0725 SM00729 Elongator protein 3, MiaB family, Radical SAM ABED_0728 SM00852 Probable molybdopterin binding domain ABED_0729 SM01059 Chloramphenicol acetyltransferase ABED_0731 SM00829 Enoylreductase ABED_0733 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0734 SM01005 Alanine racemase, C-terminal domain ABED_0735 SM00465 GIY-YIG type nucleases (URI domain) ABED_0736 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0737 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0738 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0739 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0745 SM00347 helix_turn_helix multiple antibiotic resistance protein ABED_0748 SM00267 diguanylate cyclase ABED_0756 SM00220 Serine/Threonine protein kinases, catalytic domain ABED_0758 SM00052 Putative diguanylate phosphodiesterase ABED_0759 SM00448 cheY-homologous receiver domain ABED_0759 SM00850 LytTr DNA-binding domain ABED_0769 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0781 SM00479 ABED_0781 ABED_0801 SM00530 Helix-turn-helix XRE-family like proteins ABED_0809 SM00487 DEAD-like helicases superfamily ABED_0816 SM00530 Helix-turn-helix XRE-family like proteins ABED_0820 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0821 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_0823 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABED_0826 SM01130 ABED_0826 ABED_0829 SM00382 ATPases associated with a variety of cellular activities ABED_0836 SM00382 ATPases associated with a variety of cellular activities ABED_0839 SM00052 Putative diguanylate phosphodiesterase ABED_0839 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABED_0839 SM00091 PAS domain ABED_0839 SM00267 diguanylate cyclase ABED_0841 SM00382 ATPases associated with a variety of cellular activities ABED_0841 SM00962 SRP54-type protein, GTPase domain ABED_0844 SM00322 K homology RNA-binding domain ABED_0844 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABED_0853 SM00448 cheY-homologous receiver domain ABED_0853 SM00862 Transcriptional regulatory protein, C terminal ABED_0854 SM00387 Histidine kinase-like ATPases ABED_0854 SM00388 His Kinase A (phosphoacceptor) domain ABED_0856 SM00267 diguanylate cyclase ABED_0858 SM00382 ATPases associated with a variety of cellular activities ABED_0875 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ABED_0875 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABED_0875 SM00849 Metallo-beta-lactamase superfamily ABED_0876 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain ABED_0876 SM01080 ABED_0876 ABED_0877 SM00028 Tetratricopeptide repeats ABED_0888 SM00382 ATPases associated with a variety of cellular activities ABED_0890 SM00912 haemagglutination activity domain ABED_0898 SM00219 Tyrosine kinase, catalytic domain ABED_0898 SM00220 Serine/Threonine protein kinases, catalytic domain ABED_0915 SM00857 Resolvase, N terminal domain ABED_0918 SM00382 ATPases associated with a variety of cellular activities ABED_0918 SM01086 C-terminal, D2-small domain, of ClpB protein ABED_0921 SM00257 Lysin motif ABED_0931 SM00965 Secretin and TonB N terminus short domain ABED_0932 SM00859 Semialdehyde dehydrogenase, NAD binding domain ABED_0933 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABED_0940 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABED_0940 SM00091 PAS domain ABED_0940 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABED_0946 SM00382 ATPases associated with a variety of cellular activities ABED_0948 SM00060 Fibronectin type 3 domain ABED_0949 SM00363 S4 RNA-binding domain ABED_0959 SM01329 ABED_0959 ABED_0965 SM00363 S4 RNA-binding domain ABED_0965 SM01390 ABED_0965 ABED_0966 SM00662 RNA polymerases D ABED_0969 SM00116 Domain in cystathionine beta-synthase and other proteins. ABED_0969 SM01240 ABED_0969 ABED_0972 SM00062 Bacterial periplasmic substrate-binding proteins ABED_0973 SM00448 cheY-homologous receiver domain ABED_0973 SM00862 Transcriptional regulatory protein, C terminal ABED_0976 SM00112 Cadherin repeats. ABED_0976 SM00736 Dystroglycan-type cadherin-like domains. ABED_0979 SM00271 DnaJ molecular chaperone homology domain ABED_0980 SM00271 DnaJ molecular chaperone homology domain ABED_0982 SM00387 Histidine kinase-like ATPases ABED_0983 SM00448 cheY-homologous receiver domain ABED_0983 SM00862 Transcriptional regulatory protein, C terminal ABED_0984 SM00912 haemagglutination activity domain ABED_0987 SM00382 ATPases associated with a variety of cellular activities ABED_0999 SM00342 helix_turn_helix, arabinose operon control protein ABED_1015 SM00382 ATPases associated with a variety of cellular activities ABED_1017 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_1018 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ABED_1018 SM00292 breast cancer carboxy-terminal domain ABED_1018 SM00532 Ligase N family ABED_1021 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABED_1025 SM00919 Malic enzyme, NAD binding domain ABED_1025 SM01274 ABED_1025 ABED_1032 SM00448 cheY-homologous receiver domain ABED_1032 SM00862 Transcriptional regulatory protein, C terminal ABED_1033 SM00387 Histidine kinase-like ATPases ABED_1034 SM00244 prohibitin homologues ABED_1037 SM00671 Sel1-like repeats. ABED_1047 SM00382 ATPases associated with a variety of cellular activities ABED_1051 SM00382 ATPases associated with a variety of cellular activities ABED_1053 SM00448 cheY-homologous receiver domain ABED_1053 SM00862 Transcriptional regulatory protein, C terminal ABED_1054 SM00387 Histidine kinase-like ATPases ABED_1054 SM00388 His Kinase A (phosphoacceptor) domain ABED_1058 SM00479 ABED_1058 ABED_1059 SM00267 diguanylate cyclase ABED_1060 SM00530 Helix-turn-helix XRE-family like proteins ABED_1061 SM00490 helicase superfamily c-terminal domain ABED_1062 SM00091 PAS domain ABED_1062 SM00387 Histidine kinase-like ATPases ABED_1063 SM00448 cheY-homologous receiver domain ABED_1063 SM00862 Transcriptional regulatory protein, C terminal ABED_1065 SM00382 ATPases associated with a variety of cellular activities ABED_1067 SM00421 helix_turn_helix, Lux Regulon ABED_1069 SM00052 Putative diguanylate phosphodiesterase ABED_1069 SM00267 diguanylate cyclase ABED_1072 SM00729 Elongator protein 3, MiaB family, Radical SAM ABED_1073 SM00382 ATPases associated with a variety of cellular activities ABED_1075 SM00852 Probable molybdopterin binding domain ABED_1081 SM00530 Helix-turn-helix XRE-family like proteins ABED_1083 SM00871 Bacterial transcription activator, effector binding domain ABED_1088 SM00463 Small MutS-related domain ABED_1088 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ABED_1088 SM00534 ATPase domain of DNA mismatch repair MUTS family ABED_1089 SM00116 Domain in cystathionine beta-synthase and other proteins. ABED_1089 SM01091 Transporter associated domain ABED_1093 SM00938 Nitrogen regulatory protein P-II ABED_1100 SM00843 ABED_1100 ABED_1101 SM00448 cheY-homologous receiver domain ABED_1108 SM01209 ABED_1108 ABED_1108 SM01210 ABED_1108 ABED_1112 SM00316 Ribosomal protein S1-like RNA-binding domain ABED_1112 SM00322 K homology RNA-binding domain ABED_1113 SM00448 cheY-homologous receiver domain ABED_1114 SM00073 Histidine Phosphotransfer domain ABED_1114 SM00260 Two component signalling adaptor domain ABED_1114 SM00387 Histidine kinase-like ATPases ABED_1114 SM01231 ABED_1114 ABED_1115 SM00138 Methyltransferase, chemotaxis proteins ABED_1117 SM00448 cheY-homologous receiver domain ABED_1126 SM00729 Elongator protein 3, MiaB family, Radical SAM ABED_1156 SM01004 Delta-aminolevulinic acid dehydratase ABED_1157 SM00091 PAS domain ABED_1157 SM00387 Histidine kinase-like ATPases ABED_1158 SM00448 cheY-homologous receiver domain ABED_1158 SM00862 Transcriptional regulatory protein, C terminal ABED_1163 SM00729 Elongator protein 3, MiaB family, Radical SAM ABED_1169 SM00271 DnaJ molecular chaperone homology domain ABED_1174 SM00479 ABED_1174 ABED_1184 SM00448 cheY-homologous receiver domain ABED_1184 SM00862 Transcriptional regulatory protein, C terminal ABED_1185 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ABED_1185 SM00474 3'-5' exonuclease ABED_1185 SM00475 5'-3' exonuclease ABED_1185 SM00482 DNA polymerase A domain ABED_1188 SM00052 Putative diguanylate phosphodiesterase ABED_1188 SM00267 diguanylate cyclase ABED_1189 SM00382 ATPases associated with a variety of cellular activities ABED_1193 SM00363 S4 RNA-binding domain ABED_1203 SM00448 cheY-homologous receiver domain ABED_1203 SM00862 Transcriptional regulatory protein, C terminal ABED_1204 SM00387 Histidine kinase-like ATPases ABED_1204 SM00388 His Kinase A (phosphoacceptor) domain ABED_1208 SM00271 DnaJ molecular chaperone homology domain ABED_1213 SM00849 Metallo-beta-lactamase superfamily ABED_1214 SM00267 diguanylate cyclase ABED_1215 SM00267 diguanylate cyclase ABED_1221 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_1221 SM01049 ABED_1221 ABED_1223 SM00957 SecA DEAD-like domain ABED_1223 SM00958 SecA preprotein cross-linking domain ABED_1234 SM01007 Class II Aldolase and Adducin N-terminal domain ABED_1235 SM00411 bacterial (prokaryotic) histone like domain ABED_1267 SM00448 cheY-homologous receiver domain ABED_1269 SM00091 PAS domain ABED_1269 SM00387 Histidine kinase-like ATPases ABED_1270 SM00271 DnaJ molecular chaperone homology domain ABED_1271 SM00422 helix_turn_helix, mercury resistance ABED_1273 SM00382 ATPases associated with a variety of cellular activities ABED_1280 SM00851 MGS-like domain ABED_1280 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABED_1287 SM00864 Tubulin/FtsZ family, GTPase domain ABED_1287 SM00865 Tubulin/FtsZ family, C-terminal domain ABED_1288 SM00842 Cell division protein FtsA ABED_1296 SM00382 ATPases associated with a variety of cellular activities ABED_1301 SM00487 DEAD-like helicases superfamily ABED_1301 SM00490 helicase superfamily c-terminal domain ABED_1315 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_1323 SM00981 ABED_1323 ABED_1345 SM00267 diguanylate cyclase ABED_1358 SM00965 Secretin and TonB N terminus short domain ABED_1359 SM00267 diguanylate cyclase ABED_1365 SM00342 helix_turn_helix, arabinose operon control protein ABED_1366 SM00478 endonuclease III ABED_1371 SM00729 Elongator protein 3, MiaB family, Radical SAM ABED_1377 SM00965 Secretin and TonB N terminus short domain ABED_1380 SM00487 DEAD-like helicases superfamily ABED_1380 SM00490 helicase superfamily c-terminal domain ABED_1384 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_1390 SM00852 Probable molybdopterin binding domain ABED_1396 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ABED_1401 SM00387 Histidine kinase-like ATPases ABED_1402 SM00448 cheY-homologous receiver domain ABED_1406 SM00460 Transglutaminase/protease-like homologues ABED_1409 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ABED_1420 SM00671 Sel1-like repeats. ABED_1427 SM00387 Histidine kinase-like ATPases ABED_1427 SM01049 ABED_1427 ABED_1429 SM00670 Large family of predicted nucleotide-binding domains ABED_1431 SM00052 Putative diguanylate phosphodiesterase ABED_1431 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABED_1431 SM00267 diguanylate cyclase ABED_1433 SM00091 PAS domain ABED_1433 SM00267 diguanylate cyclase ABED_1434 SM00487 DEAD-like helicases superfamily ABED_1434 SM00490 helicase superfamily c-terminal domain ABED_1438 SM00387 Histidine kinase-like ATPases ABED_1441 SM00248 ankyrin repeats ABED_1446 SM00052 Putative diguanylate phosphodiesterase ABED_1446 SM00267 diguanylate cyclase ABED_1457 SM00965 Secretin and TonB N terminus short domain ABED_1462 SM00342 helix_turn_helix, arabinose operon control protein ABED_1466 SM01131 ABED_1466 ABED_1471 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ABED_1480 SM00382 ATPases associated with a variety of cellular activities ABED_1486 SM00470 ParB-like nuclease domain ABED_1495 SM00400 zinc finger ABED_1495 SM00493 ABED_1495 ABED_1497 SM00358 Double-stranded RNA binding motif ABED_1497 SM00535 Ribonuclease III family ABED_1502 SM00855 Phosphoglycerate mutase family ABED_1505 SM01245 ABED_1505 ABED_1507 SM01234 ABED_1507 ABED_1509 SM00382 ATPases associated with a variety of cellular activities ABED_1509 SM01086 C-terminal, D2-small domain, of ClpB protein ABED_1520 SM00062 Bacterial periplasmic substrate-binding proteins ABED_1520 SM00387 Histidine kinase-like ATPases ABED_1521 SM00798 AICARFT/IMPCHase bienzyme ABED_1521 SM00851 MGS-like domain ABED_1528 SM00382 ATPases associated with a variety of cellular activities ABED_1545 SM00487 DEAD-like helicases superfamily ABED_1551 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_1552 SM00091 PAS domain ABED_1566 SM00448 cheY-homologous receiver domain ABED_1566 SM00862 Transcriptional regulatory protein, C terminal ABED_1567 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_1569 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABED_1569 SM00091 PAS domain ABED_1569 SM00448 cheY-homologous receiver domain ABED_1569 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABED_1570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_1570 SM01358 ABED_1570 ABED_1571 SM00062 Bacterial periplasmic substrate-binding proteins ABED_1571 SM00091 PAS domain ABED_1571 SM00387 Histidine kinase-like ATPases ABED_1577 SM00862 Transcriptional regulatory protein, C terminal ABED_1598 SM00387 Histidine kinase-like ATPases ABED_1599 SM00448 cheY-homologous receiver domain ABED_1599 SM00862 Transcriptional regulatory protein, C terminal ABED_1612 SM00382 ATPases associated with a variety of cellular activities ABED_1614 SM00450 Rhodanese Homology Domain ABED_1618 SM00859 Semialdehyde dehydrogenase, NAD binding domain ABED_1619 SM00434 DNA Topoisomerase IV ABED_1663 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_1664 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_1669 SM00904 Riboflavin kinase ABED_1681 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ABED_1682 SM00382 ATPases associated with a variety of cellular activities ABED_1684 SM00899 ABED_1684 ABED_1691 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ABED_1697 SM00357 Cold shock protein domain ABED_1699 SM00448 cheY-homologous receiver domain ABED_1699 SM00862 Transcriptional regulatory protein, C terminal ABED_1700 SM00387 Histidine kinase-like ATPases ABED_1704 SM00663 RNA polymerase I subunit A N-terminus ABED_1709 SM00649 Ribosomal protein L11/L12 ABED_1710 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. ABED_1717 SM00382 ATPases associated with a variety of cellular activities ABED_1719 SM01230 ABED_1719 ABED_1730 SM00382 ATPases associated with a variety of cellular activities ABED_1730 SM01086 C-terminal, D2-small domain, of ClpB protein ABED_1739 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_1741 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ABED_1744 SM00226 Low molecular weight phosphatase family ABED_1749 SM00382 ATPases associated with a variety of cellular activities ABED_1758 SM00382 ATPases associated with a variety of cellular activities ABED_1758 SM00962 SRP54-type protein, GTPase domain ABED_1764 SM00028 Tetratricopeptide repeats ABED_1776 SM00448 cheY-homologous receiver domain ABED_1783 SM00382 ATPases associated with a variety of cellular activities ABED_1783 SM00962 SRP54-type protein, GTPase domain ABED_1783 SM00963 SRP54-type protein, helical bundle domain ABED_1790 SM01001 AIR carboxylase ABED_1793 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_1793 SM01049 ABED_1793 ABED_1796 SM00838 Elongation factor G C-terminus ABED_1796 SM00889 Elongation factor G, domain IV ABED_1804 SM00382 ATPases associated with a variety of cellular activities ABED_1814 SM00382 ATPases associated with a variety of cellular activities ABED_1815 SM00342 helix_turn_helix, arabinose operon control protein ABED_1824 SM00316 Ribosomal protein S1-like RNA-binding domain ABED_1824 SM00732 Likely ribonuclease with RNase H fold. ABED_1828 SM00342 helix_turn_helix, arabinose operon control protein ABED_1828 SM00871 Bacterial transcription activator, effector binding domain ABED_1840 SM00905 Dihydroneopterin aldolase ABED_1841 SM01207 ABED_1841 ABED_1854 SM00841 Elongation factor P, C-terminal ABED_1854 SM01185 ABED_1854 ABED_1856 SM00316 Ribosomal protein S1-like RNA-binding domain ABED_1859 SM00874 tRNA synthetase B5 domain ABED_1859 SM00896 Ferredoxin-fold anticodon binding domain ABED_1863 SM00825 Beta-ketoacyl synthase ABED_1865 SM00822 ABED_1865 ABED_1878 SM00937 ABED_1878 ABED_1893 SM00729 Elongator protein 3, MiaB family, Radical SAM ABED_1898 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ABED_1903 SM00387 Histidine kinase-like ATPases ABED_1903 SM00388 His Kinase A (phosphoacceptor) domain ABED_1904 SM00448 cheY-homologous receiver domain ABED_1904 SM00862 Transcriptional regulatory protein, C terminal ABED_1905 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABED_1909 SM00382 ATPases associated with a variety of cellular activities ABED_1915 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABED_1915 SM00245 tail specific protease ABED_1918 SM01211 ABED_1918 ABED_1920 SM00563 Phosphate acyltransferases ABED_1924 SM00836 DALR anticodon binding domain ABED_1924 SM01016 Arginyl tRNA synthetase N terminal dom ABED_1927 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABED_1932 SM00830 Chorismate mutase type II ABED_1934 SM00861 Transketolase, pyrimidine binding domain ABED_1940 SM00100 Cyclic nucleotide-monophosphate binding domain ABED_1940 SM00419 helix_turn_helix, cAMP Regulatory protein ABED_1942 SM00986 Uracil DNA glycosylase superfamily ABED_1942 SM00987 UreE urease accessory protein, C-terminal domain ABED_1954 SM00267 diguanylate cyclase ABED_1958 SM00965 Secretin and TonB N terminus short domain ABED_1974 SM00327 von Willebrand factor (vWF) type A domain ABED_1986 SM00052 Putative diguanylate phosphodiesterase ABED_1986 SM00267 diguanylate cyclase ABED_1989 SM00925 MltA specific insert domain ABED_2000 SM00248 ankyrin repeats ABED_2001 SM00487 DEAD-like helicases superfamily ABED_2001 SM00490 helicase superfamily c-terminal domain ABED_2020 SM01228 ABED_2020 ABED_2024 SM00382 ATPases associated with a variety of cellular activities ABED_2024 SM00994 ClpX C4-type zinc finger ABED_2024 SM01086 C-terminal, D2-small domain, of ClpB protein ABED_2031 SM00518 AP endonuclease family 2 ABED_2038 SM00671 Sel1-like repeats. ABED_2039 SM00671 Sel1-like repeats. ABED_2041 SM00382 ATPases associated with a variety of cellular activities ABED_2045 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ABED_2045 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ABED_2045 SM00493 ABED_2045 ABED_2047 SM00729 Elongator protein 3, MiaB family, Radical SAM ABED_2047 SM00876 Biotin and Thiamin Synthesis associated domain ABED_2050 SM01192 ABED_2050 ABED_2050 SM01193 ABED_2050 ABED_2051 SM00382 ATPases associated with a variety of cellular activities ABED_2060 SM01209 ABED_2060 ABED_2073 SM00481 DNA polymerase alpha chain like domain ABED_2093 SM00857 Resolvase, N terminal domain ABED_2098 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ABED_2103 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABED_2104 SM00450 Rhodanese Homology Domain ABED_2105 SM00460 Transglutaminase/protease-like homologues ABED_2107 SM00460 Transglutaminase/protease-like homologues ABED_2108 SM00382 ATPases associated with a variety of cellular activities ABED_2112 SM00052 Putative diguanylate phosphodiesterase ABED_2117 SM00382 ATPases associated with a variety of cellular activities ABED_2120 SM00062 Bacterial periplasmic substrate-binding proteins ABED_2122 SM00382 ATPases associated with a variety of cellular activities ABED_2125 SM00062 Bacterial periplasmic substrate-binding proteins ABED_2137 SM00965 Secretin and TonB N terminus short domain ABED_2140 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABED_2140 SM00091 PAS domain ABED_2140 SM00267 diguanylate cyclase ABED_2149 SM00448 cheY-homologous receiver domain ABED_2149 SM00862 Transcriptional regulatory protein, C terminal ABED_2150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ABED_2152 SM00342 helix_turn_helix, arabinose operon control protein ABED_2153 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif.