Abu_0001 SM00382 ATPases associated with a variety of cellular activities Abu_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Abu_0002 SM00480 DNA polymerase III beta subunit Abu_0003 SM00387 Histidine kinase-like ATPases Abu_0003 SM00433 TopoisomeraseII Abu_0009 SM00382 ATPases associated with a variety of cellular activities Abu_0019 SM00998 Adenylosuccinate lyase C-terminus Abu_0027 SM00829 Enoylreductase Abu_0030 SM00845 GatB domain Abu_0034 SM00448 cheY-homologous receiver domain Abu_0034 SM00862 Transcriptional regulatory protein, C terminal Abu_0035 SM00091 PAS domain Abu_0035 SM00387 Histidine kinase-like ATPases Abu_0041 SM00878 Biotin carboxylase C-terminal domain Abu_0042 SM00487 DEAD-like helicases superfamily Abu_0042 SM00490 helicase superfamily c-terminal domain Abu_0049 SM00382 ATPases associated with a variety of cellular activities Abu_0050 SM00363 S4 RNA-binding domain Abu_0051 SM00116 Domain in cystathionine beta-synthase and other proteins. Abu_0052 SM00849 Metallo-beta-lactamase superfamily Abu_0053 SM00650 Ribosomal RNA adenine dimethylases Abu_0059 SM00360 RNA recognition motif Abu_0060 SM00448 cheY-homologous receiver domain Abu_0060 SM00862 Transcriptional regulatory protein, C terminal Abu_0061 SM00387 Histidine kinase-like ATPases Abu_0061 SM00388 His Kinase A (phosphoacceptor) domain Abu_0066 SM00867 YceI-like domain Abu_0071 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Abu_0075 SM00450 Rhodanese Homology Domain Abu_0083 SM00937 Abu_0083 Abu_0086 SM00052 Putative diguanylate phosphodiesterase Abu_0086 SM00267 diguanylate cyclase Abu_0089 SM00382 ATPases associated with a variety of cellular activities Abu_0092 SM00448 cheY-homologous receiver domain Abu_0092 SM00862 Transcriptional regulatory protein, C terminal Abu_0093 SM00387 Histidine kinase-like ATPases Abu_0093 SM00388 His Kinase A (phosphoacceptor) domain Abu_0101 SM00448 cheY-homologous receiver domain Abu_0101 SM00862 Transcriptional regulatory protein, C terminal Abu_0102 SM00387 Histidine kinase-like ATPases Abu_0102 SM01049 Abu_0102 Abu_0103 SM00947 Carbonic anhydrase Abu_0107 SM00382 ATPases associated with a variety of cellular activities Abu_0117 SM01018 B12 binding domain Abu_0119 SM00244 prohibitin homologues Abu_0127 SM00448 cheY-homologous receiver domain Abu_0130 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Abu_0132 SM00788 Adenylosuccinate synthetase Abu_0135 SM00867 YceI-like domain Abu_0136 SM00347 helix_turn_helix multiple antibiotic resistance protein Abu_0137 SM00867 YceI-like domain Abu_0140 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Abu_0147 SM00671 Sel1-like repeats. Abu_0155 SM00967 RNA 2'-O ribose methyltransferase substrate binding Abu_0178 SM00342 helix_turn_helix, arabinose operon control protein Abu_0178 SM00871 Bacterial transcription activator, effector binding domain Abu_0180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0181 SM00487 DEAD-like helicases superfamily Abu_0181 SM00490 helicase superfamily c-terminal domain Abu_0182 SM00861 Transketolase, pyrimidine binding domain Abu_0188 SM00422 helix_turn_helix, mercury resistance Abu_0192 SM00563 Phosphate acyltransferases Abu_0193 SM00563 Phosphate acyltransferases Abu_0197 SM00248 ankyrin repeats Abu_0198 SM00938 Nitrogen regulatory protein P-II Abu_0214 SM00729 Elongator protein 3, MiaB family, Radical SAM Abu_0219 SM00732 Likely ribonuclease with RNase H fold. Abu_0238 SM00955 Abu_0238 Abu_0245 SM00840 Abu_0245 Abu_0246 SM00316 Ribosomal protein S1-like RNA-binding domain Abu_0248 SM00729 Elongator protein 3, MiaB family, Radical SAM Abu_0253 SM00947 Carbonic anhydrase Abu_0264 SM00862 Transcriptional regulatory protein, C terminal Abu_0266 SM00782 PhnA Zinc-Ribbon Abu_0285 SM00382 ATPases associated with a variety of cellular activities Abu_0287 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Abu_0288 SM00357 Cold shock protein domain Abu_0288 SM00382 ATPases associated with a variety of cellular activities Abu_0288 SM00959 Rho termination factor, N-terminal domain Abu_0291 SM00562 Abu_0291 Abu_0309 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Abu_0311 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Abu_0324 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0324 SM01049 Abu_0324 Abu_0334 SM00342 helix_turn_helix, arabinose operon control protein Abu_0338 SM00382 ATPases associated with a variety of cellular activities Abu_0339 SM00382 ATPases associated with a variety of cellular activities Abu_0341 SM00342 helix_turn_helix, arabinose operon control protein Abu_0350 SM00052 Putative diguanylate phosphodiesterase Abu_0350 SM00267 diguanylate cyclase Abu_0353 SM00320 WD40 repeats Abu_0358 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Abu_0362 SM00387 Histidine kinase-like ATPases Abu_0362 SM01049 Abu_0362 Abu_0363 SM00448 cheY-homologous receiver domain Abu_0363 SM00862 Transcriptional regulatory protein, C terminal Abu_0367 SM00100 Cyclic nucleotide-monophosphate binding domain Abu_0367 SM00419 helix_turn_helix, cAMP Regulatory protein Abu_0369 SM00729 Elongator protein 3, MiaB family, Radical SAM Abu_0370 SM01387 Abu_0370 Abu_0373 SM00881 CoA binding domain Abu_0374 SM00387 Histidine kinase-like ATPases Abu_0374 SM00388 His Kinase A (phosphoacceptor) domain Abu_0375 SM00448 cheY-homologous receiver domain Abu_0375 SM00862 Transcriptional regulatory protein, C terminal Abu_0394 SM01323 Abu_0394 Abu_0405 SM00487 DEAD-like helicases superfamily Abu_0405 SM00490 helicase superfamily c-terminal domain Abu_0406 SM00563 Phosphate acyltransferases Abu_0410 SM00487 DEAD-like helicases superfamily Abu_0410 SM00490 helicase superfamily c-terminal domain Abu_0410 SM00982 Abu_0410 Abu_0410 SM01058 CarD-like/TRCF domain Abu_0414 SM00448 cheY-homologous receiver domain Abu_0414 SM00862 Transcriptional regulatory protein, C terminal Abu_0417 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0418 SM00448 cheY-homologous receiver domain Abu_0419 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Abu_0419 SM00091 PAS domain Abu_0420 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Abu_0420 SM00091 PAS domain Abu_0420 SM00387 Histidine kinase-like ATPases Abu_0420 SM00388 His Kinase A (phosphoacceptor) domain Abu_0426 SM00260 Two component signalling adaptor domain Abu_0431 SM00883 Chaperonin 10 Kd subunit Abu_0433 SM00387 Histidine kinase-like ATPases Abu_0433 SM00388 His Kinase A (phosphoacceptor) domain Abu_0434 SM00448 cheY-homologous receiver domain Abu_0434 SM00862 Transcriptional regulatory protein, C terminal Abu_0437 SM00867 YceI-like domain Abu_0440 SM00382 ATPases associated with a variety of cellular activities Abu_0452 SM00382 ATPases associated with a variety of cellular activities Abu_0453 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Abu_0453 SM00091 PAS domain Abu_0453 SM00448 cheY-homologous receiver domain Abu_0453 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Abu_0454 SM00448 cheY-homologous receiver domain Abu_0455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Abu_0455 SM00387 Histidine kinase-like ATPases Abu_0456 SM00917 LeuA allosteric (dimerisation) domain Abu_0458 SM01235 Abu_0458 Abu_0459 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Abu_0459 SM00534 ATPase domain of DNA mismatch repair MUTS family Abu_0464 SM00342 helix_turn_helix, arabinose operon control protein Abu_0469 SM00382 ATPases associated with a variety of cellular activities Abu_0472 SM00267 diguanylate cyclase Abu_0478 SM00838 Elongation factor G C-terminus Abu_0482 SM01400 Abu_0482 Abu_0497 SM00479 Abu_0497 Abu_0498 SM00100 Cyclic nucleotide-monophosphate binding domain Abu_0498 SM00116 Domain in cystathionine beta-synthase and other proteins. Abu_0503 SM00479 Abu_0503 Abu_0504 SM00116 Domain in cystathionine beta-synthase and other proteins. Abu_0507 SM00448 cheY-homologous receiver domain Abu_0507 SM00862 Transcriptional regulatory protein, C terminal Abu_0508 SM00387 Histidine kinase-like ATPases Abu_0508 SM00388 His Kinase A (phosphoacceptor) domain Abu_0508 SM01049 Abu_0508 Abu_0526 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0526 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Abu_0528 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0530 SM00155 Phospholipase D. Active site motifs. Abu_0534 SM00852 Probable molybdopterin binding domain Abu_0542 SM00382 ATPases associated with a variety of cellular activities Abu_0544 SM00072 Guanylate kinase homologues. Abu_0545 SM00052 Putative diguanylate phosphodiesterase Abu_0545 SM00267 diguanylate cyclase Abu_0545 SM00448 cheY-homologous receiver domain Abu_0549 SM00382 ATPases associated with a variety of cellular activities Abu_0552 SM00899 Abu_0552 Abu_0554 SM00382 ATPases associated with a variety of cellular activities Abu_0556 SM00316 Ribosomal protein S1-like RNA-binding domain Abu_0558 SM00671 Sel1-like repeats. Abu_0578 SM00849 Metallo-beta-lactamase superfamily Abu_0580 SM00450 Rhodanese Homology Domain Abu_0592 SM00382 ATPases associated with a variety of cellular activities Abu_0592 SM00464 Found in ATP-dependent protease La (LON) Abu_0594 SM00226 Low molecular weight phosphatase family Abu_0596 SM00028 Tetratricopeptide repeats Abu_0597 SM00347 helix_turn_helix multiple antibiotic resistance protein Abu_0599 SM00530 Helix-turn-helix XRE-family like proteins Abu_0602 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Abu_0602 SM00091 PAS domain Abu_0602 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0605 SM00878 Biotin carboxylase C-terminal domain Abu_0610 SM00382 ATPases associated with a variety of cellular activities Abu_0614 SM00116 Domain in cystathionine beta-synthase and other proteins. Abu_0615 SM00267 diguanylate cyclase Abu_0617 SM00260 Two component signalling adaptor domain Abu_0617 SM00448 cheY-homologous receiver domain Abu_0621 SM00487 DEAD-like helicases superfamily Abu_0621 SM00490 helicase superfamily c-terminal domain Abu_0622 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0623 SM00478 endonuclease III Abu_0627 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0630 SM00448 cheY-homologous receiver domain Abu_0630 SM00862 Transcriptional regulatory protein, C terminal Abu_0631 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Abu_0631 SM00091 PAS domain Abu_0631 SM00387 Histidine kinase-like ATPases Abu_0632 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0632 SM01358 Abu_0632 Abu_0633 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0642 SM00646 Abu_0642 Abu_0644 SM00363 S4 RNA-binding domain Abu_0645 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Abu_0645 SM00954 Region found in RelA / SpoT proteins Abu_0646 SM01409 Abu_0646 Abu_0657 SM00267 diguanylate cyclase Abu_0658 SM00382 ATPases associated with a variety of cellular activities Abu_0659 SM00984 UDP binding domain Abu_0661 SM00984 UDP binding domain Abu_0675 SM00382 ATPases associated with a variety of cellular activities Abu_0708 SM00382 ATPases associated with a variety of cellular activities Abu_0710 SM00248 ankyrin repeats Abu_0722 SM00448 cheY-homologous receiver domain Abu_0722 SM00862 Transcriptional regulatory protein, C terminal Abu_0724 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Abu_0739 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Abu_0739 SM00267 diguanylate cyclase Abu_0743 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0744 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Abu_0751 SM01403 Abu_0751 Abu_0755 SM01382 Abu_0755 Abu_0755 SM01383 Abu_0755 Abu_0758 SM00322 K homology RNA-binding domain Abu_0762 SM01374 Abu_0762 Abu_0763 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Abu_0773 SM00316 Ribosomal protein S1-like RNA-binding domain Abu_0774 SM00986 Uracil DNA glycosylase superfamily Abu_0774 SM00987 UreE urease accessory protein, C-terminal domain Abu_0777 SM00260 Two component signalling adaptor domain Abu_0778 SM00729 Elongator protein 3, MiaB family, Radical SAM Abu_0781 SM00852 Probable molybdopterin binding domain Abu_0782 SM01059 Chloramphenicol acetyltransferase Abu_0783 SM00829 Enoylreductase Abu_0785 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0786 SM01005 Alanine racemase, C-terminal domain Abu_0787 SM00465 GIY-YIG type nucleases (URI domain) Abu_0788 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0789 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0790 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0791 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0792 SM00448 cheY-homologous receiver domain Abu_0792 SM00862 Transcriptional regulatory protein, C terminal Abu_0793 SM00387 Histidine kinase-like ATPases Abu_0793 SM00388 His Kinase A (phosphoacceptor) domain Abu_0793 SM00448 cheY-homologous receiver domain Abu_0794 SM00387 Histidine kinase-like ATPases Abu_0794 SM00388 His Kinase A (phosphoacceptor) domain Abu_0794 SM00448 cheY-homologous receiver domain Abu_0803 SM00382 ATPases associated with a variety of cellular activities Abu_0808 SM00988 UreE urease accessory protein, N-terminal domain Abu_0816 SM00347 helix_turn_helix multiple antibiotic resistance protein Abu_0820 SM00267 diguanylate cyclase Abu_0828 SM00220 Serine/Threonine protein kinases, catalytic domain Abu_0830 SM00052 Putative diguanylate phosphodiesterase Abu_0831 SM00448 cheY-homologous receiver domain Abu_0831 SM00850 LytTr DNA-binding domain Abu_0846 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_0858 SM00479 Abu_0858 Abu_0871 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Abu_0874 SM01130 Abu_0874 Abu_0877 SM00382 ATPases associated with a variety of cellular activities Abu_0884 SM00382 ATPases associated with a variety of cellular activities Abu_0887 SM00052 Putative diguanylate phosphodiesterase Abu_0887 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Abu_0887 SM00091 PAS domain Abu_0887 SM00267 diguanylate cyclase Abu_0889 SM00382 ATPases associated with a variety of cellular activities Abu_0889 SM00962 SRP54-type protein, GTPase domain Abu_0892 SM00322 K homology RNA-binding domain Abu_0892 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Abu_0904 SM00448 cheY-homologous receiver domain Abu_0904 SM00862 Transcriptional regulatory protein, C terminal Abu_0905 SM00387 Histidine kinase-like ATPases Abu_0907 SM00267 diguanylate cyclase Abu_0909 SM00382 ATPases associated with a variety of cellular activities Abu_0927 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Abu_0927 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Abu_0927 SM00849 Metallo-beta-lactamase superfamily Abu_0928 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Abu_0928 SM01080 Abu_0928 Abu_0929 SM00028 Tetratricopeptide repeats Abu_0938 SM00382 ATPases associated with a variety of cellular activities Abu_0940 SM00912 haemagglutination activity domain Abu_0969 SM00857 Resolvase, N terminal domain Abu_0972 SM00382 ATPases associated with a variety of cellular activities Abu_0972 SM01086 C-terminal, D2-small domain, of ClpB protein Abu_0975 SM00257 Lysin motif Abu_0985 SM00965 Secretin and TonB N terminus short domain Abu_0986 SM00859 Semialdehyde dehydrogenase, NAD binding domain Abu_0987 SM00345 helix_turn_helix gluconate operon transcriptional repressor Abu_0994 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Abu_0994 SM00091 PAS domain Abu_0994 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Abu_1000 SM00382 ATPases associated with a variety of cellular activities Abu_1002 SM00060 Fibronectin type 3 domain Abu_1003 SM00363 S4 RNA-binding domain Abu_1013 SM01329 Abu_1013 Abu_1019 SM00363 S4 RNA-binding domain Abu_1019 SM01390 Abu_1019 Abu_1020 SM00662 RNA polymerases D Abu_1023 SM00116 Domain in cystathionine beta-synthase and other proteins. Abu_1023 SM01240 Abu_1023 Abu_1026 SM00062 Bacterial periplasmic substrate-binding proteins Abu_1027 SM00448 cheY-homologous receiver domain Abu_1027 SM00862 Transcriptional regulatory protein, C terminal Abu_1030 SM00112 Cadherin repeats. Abu_1030 SM00736 Dystroglycan-type cadherin-like domains. Abu_1033 SM00271 DnaJ molecular chaperone homology domain Abu_1034 SM00271 DnaJ molecular chaperone homology domain Abu_1036 SM00387 Histidine kinase-like ATPases Abu_1037 SM00448 cheY-homologous receiver domain Abu_1037 SM00862 Transcriptional regulatory protein, C terminal Abu_1039 SM00382 ATPases associated with a variety of cellular activities Abu_1042 SM00829 Enoylreductase Abu_1051 SM00342 helix_turn_helix, arabinose operon control protein Abu_1064 SM00382 ATPases associated with a variety of cellular activities Abu_1066 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_1067 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Abu_1067 SM00292 breast cancer carboxy-terminal domain Abu_1067 SM00532 Ligase N family Abu_1070 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Abu_1076 SM00919 Malic enzyme, NAD binding domain Abu_1076 SM01274 Abu_1076 Abu_1083 SM00448 cheY-homologous receiver domain Abu_1083 SM00862 Transcriptional regulatory protein, C terminal Abu_1084 SM00387 Histidine kinase-like ATPases Abu_1085 SM00244 prohibitin homologues Abu_1093 SM00671 Sel1-like repeats. Abu_1103 SM00382 ATPases associated with a variety of cellular activities Abu_1106 SM00382 ATPases associated with a variety of cellular activities Abu_1108 SM00448 cheY-homologous receiver domain Abu_1108 SM00862 Transcriptional regulatory protein, C terminal Abu_1109 SM00387 Histidine kinase-like ATPases Abu_1109 SM00388 His Kinase A (phosphoacceptor) domain Abu_1113 SM00479 Abu_1113 Abu_1114 SM00267 diguanylate cyclase Abu_1115 SM00530 Helix-turn-helix XRE-family like proteins Abu_1116 SM00487 DEAD-like helicases superfamily Abu_1116 SM00490 helicase superfamily c-terminal domain Abu_1117 SM00091 PAS domain Abu_1117 SM00387 Histidine kinase-like ATPases Abu_1118 SM00448 cheY-homologous receiver domain Abu_1118 SM00862 Transcriptional regulatory protein, C terminal Abu_1120 SM00382 ATPases associated with a variety of cellular activities Abu_1122 SM00421 helix_turn_helix, Lux Regulon Abu_1124 SM00052 Putative diguanylate phosphodiesterase Abu_1124 SM00267 diguanylate cyclase Abu_1127 SM00729 Elongator protein 3, MiaB family, Radical SAM Abu_1128 SM00382 ATPases associated with a variety of cellular activities Abu_1130 SM00852 Probable molybdopterin binding domain Abu_1137 SM00530 Helix-turn-helix XRE-family like proteins Abu_1140 SM00382 ATPases associated with a variety of cellular activities Abu_1141 SM00871 Bacterial transcription activator, effector binding domain Abu_1146 SM00463 Small MutS-related domain Abu_1146 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Abu_1146 SM00534 ATPase domain of DNA mismatch repair MUTS family Abu_1147 SM00116 Domain in cystathionine beta-synthase and other proteins. Abu_1147 SM01091 Transporter associated domain Abu_1152 SM00938 Nitrogen regulatory protein P-II Abu_1159 SM00843 Abu_1159 Abu_1160 SM00448 cheY-homologous receiver domain Abu_1160 SM00862 Transcriptional regulatory protein, C terminal Abu_1161 SM00387 Histidine kinase-like ATPases Abu_1163 SM00387 Histidine kinase-like ATPases Abu_1164 SM00448 cheY-homologous receiver domain Abu_1164 SM00862 Transcriptional regulatory protein, C terminal Abu_1166 SM00448 cheY-homologous receiver domain Abu_1166 SM00862 Transcriptional regulatory protein, C terminal Abu_1179 SM01209 Abu_1179 Abu_1179 SM01210 Abu_1179 Abu_1183 SM00316 Ribosomal protein S1-like RNA-binding domain Abu_1183 SM00322 K homology RNA-binding domain Abu_1184 SM00448 cheY-homologous receiver domain Abu_1185 SM00073 Histidine Phosphotransfer domain Abu_1185 SM00260 Two component signalling adaptor domain Abu_1185 SM00387 Histidine kinase-like ATPases Abu_1185 SM01231 Abu_1185 Abu_1186 SM00138 Methyltransferase, chemotaxis proteins Abu_1188 SM00448 cheY-homologous receiver domain Abu_1197 SM00729 Elongator protein 3, MiaB family, Radical SAM Abu_1238 SM01004 Delta-aminolevulinic acid dehydratase Abu_1239 SM00091 PAS domain Abu_1239 SM00387 Histidine kinase-like ATPases Abu_1240 SM00448 cheY-homologous receiver domain Abu_1240 SM00862 Transcriptional regulatory protein, C terminal Abu_1245 SM00729 Elongator protein 3, MiaB family, Radical SAM Abu_1253 SM00271 DnaJ molecular chaperone homology domain Abu_1258 SM00479 Abu_1258 Abu_1269 SM00448 cheY-homologous receiver domain Abu_1269 SM00862 Transcriptional regulatory protein, C terminal Abu_1270 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Abu_1270 SM00474 3'-5' exonuclease Abu_1270 SM00475 5'-3' exonuclease Abu_1270 SM00482 DNA polymerase A domain Abu_1273 SM00052 Putative diguanylate phosphodiesterase Abu_1273 SM00267 diguanylate cyclase Abu_1274 SM00382 ATPases associated with a variety of cellular activities Abu_1278 SM00363 S4 RNA-binding domain Abu_1290 SM00448 cheY-homologous receiver domain Abu_1290 SM00862 Transcriptional regulatory protein, C terminal Abu_1291 SM00387 Histidine kinase-like ATPases Abu_1291 SM00388 His Kinase A (phosphoacceptor) domain Abu_1294 SM00271 DnaJ molecular chaperone homology domain Abu_1299 SM00849 Metallo-beta-lactamase superfamily Abu_1300 SM00267 diguanylate cyclase Abu_1301 SM00267 diguanylate cyclase Abu_1307 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_1307 SM01049 Abu_1307 Abu_1310 SM00957 SecA DEAD-like domain Abu_1310 SM00958 SecA preprotein cross-linking domain Abu_1321 SM01007 Class II Aldolase and Adducin N-terminal domain Abu_1322 SM00411 bacterial (prokaryotic) histone like domain Abu_1331 SM00487 DEAD-like helicases superfamily Abu_1331 SM00490 helicase superfamily c-terminal domain Abu_1358 SM00448 cheY-homologous receiver domain Abu_1360 SM00091 PAS domain Abu_1360 SM00387 Histidine kinase-like ATPases Abu_1361 SM00271 DnaJ molecular chaperone homology domain Abu_1362 SM00422 helix_turn_helix, mercury resistance Abu_1364 SM00382 ATPases associated with a variety of cellular activities Abu_1372 SM00851 MGS-like domain Abu_1372 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Abu_1379 SM00864 Tubulin/FtsZ family, GTPase domain Abu_1379 SM00865 Tubulin/FtsZ family, C-terminal domain Abu_1380 SM00842 Cell division protein FtsA Abu_1390 SM00382 ATPases associated with a variety of cellular activities Abu_1395 SM00487 DEAD-like helicases superfamily Abu_1395 SM00490 helicase superfamily c-terminal domain Abu_1410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_1419 SM00981 Abu_1419 Abu_1441 SM00267 diguanylate cyclase Abu_1454 SM00965 Secretin and TonB N terminus short domain Abu_1455 SM00267 diguanylate cyclase Abu_1461 SM00342 helix_turn_helix, arabinose operon control protein Abu_1462 SM00478 endonuclease III Abu_1470 SM00729 Elongator protein 3, MiaB family, Radical SAM Abu_1476 SM00965 Secretin and TonB N terminus short domain Abu_1479 SM00487 DEAD-like helicases superfamily Abu_1479 SM00490 helicase superfamily c-terminal domain Abu_1480 SM00382 ATPases associated with a variety of cellular activities Abu_1483 SM00530 Helix-turn-helix XRE-family like proteins Abu_1487 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_1493 SM00852 Probable molybdopterin binding domain Abu_1503 SM00387 Histidine kinase-like ATPases Abu_1504 SM00448 cheY-homologous receiver domain Abu_1508 SM00460 Transglutaminase/protease-like homologues Abu_1511 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Abu_1522 SM00671 Sel1-like repeats. Abu_1536 SM00387 Histidine kinase-like ATPases Abu_1536 SM01049 Abu_1536 Abu_1538 SM00670 Large family of predicted nucleotide-binding domains Abu_1540 SM00052 Putative diguanylate phosphodiesterase Abu_1540 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Abu_1540 SM00267 diguanylate cyclase Abu_1542 SM00091 PAS domain Abu_1542 SM00267 diguanylate cyclase Abu_1543 SM00487 DEAD-like helicases superfamily Abu_1543 SM00490 helicase superfamily c-terminal domain Abu_1547 SM00387 Histidine kinase-like ATPases Abu_1550 SM00248 ankyrin repeats Abu_1554 SM00052 Putative diguanylate phosphodiesterase Abu_1554 SM00267 diguanylate cyclase Abu_1564 SM00965 Secretin and TonB N terminus short domain Abu_1571 SM00342 helix_turn_helix, arabinose operon control protein Abu_1573 SM00966 SpoVT / AbrB like domain Abu_1574 SM00342 helix_turn_helix, arabinose operon control protein Abu_1578 SM01131 Abu_1578 Abu_1582 SM00448 cheY-homologous receiver domain Abu_1582 SM00862 Transcriptional regulatory protein, C terminal Abu_1583 SM00387 Histidine kinase-like ATPases Abu_1586 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Abu_1595 SM00382 ATPases associated with a variety of cellular activities Abu_1601 SM00470 ParB-like nuclease domain Abu_1611 SM00400 zinc finger Abu_1611 SM00493 Abu_1611 Abu_1613 SM00358 Double-stranded RNA binding motif Abu_1613 SM00535 Ribonuclease III family Abu_1618 SM00855 Phosphoglycerate mutase family Abu_1621 SM01245 Abu_1621 Abu_1623 SM01234 Abu_1623 Abu_1626 SM00382 ATPases associated with a variety of cellular activities Abu_1626 SM01086 C-terminal, D2-small domain, of ClpB protein Abu_1637 SM00062 Bacterial periplasmic substrate-binding proteins Abu_1637 SM00387 Histidine kinase-like ATPases Abu_1638 SM00798 AICARFT/IMPCHase bienzyme Abu_1638 SM00851 MGS-like domain Abu_1645 SM00382 ATPases associated with a variety of cellular activities Abu_1725 SM00448 cheY-homologous receiver domain Abu_1725 SM00862 Transcriptional regulatory protein, C terminal Abu_1726 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_1728 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Abu_1728 SM00091 PAS domain Abu_1728 SM00448 cheY-homologous receiver domain Abu_1728 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Abu_1729 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_1729 SM01358 Abu_1729 Abu_1730 SM00062 Bacterial periplasmic substrate-binding proteins Abu_1730 SM00091 PAS domain Abu_1730 SM00387 Histidine kinase-like ATPases Abu_1736 SM00862 Transcriptional regulatory protein, C terminal Abu_1749 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_1761 SM00387 Histidine kinase-like ATPases Abu_1762 SM00448 cheY-homologous receiver domain Abu_1762 SM00862 Transcriptional regulatory protein, C terminal Abu_1776 SM00382 ATPases associated with a variety of cellular activities Abu_1778 SM00450 Rhodanese Homology Domain Abu_1788 SM00859 Semialdehyde dehydrogenase, NAD binding domain Abu_1789 SM00434 DNA Topoisomerase IV Abu_1830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_1831 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_1836 SM00904 Riboflavin kinase Abu_1848 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Abu_1851 SM00382 ATPases associated with a variety of cellular activities Abu_1853 SM00899 Abu_1853 Abu_1860 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Abu_1866 SM00357 Cold shock protein domain Abu_1868 SM00448 cheY-homologous receiver domain Abu_1868 SM00862 Transcriptional regulatory protein, C terminal Abu_1869 SM00387 Histidine kinase-like ATPases Abu_1883 SM00663 RNA polymerase I subunit A N-terminus Abu_1888 SM00649 Ribosomal protein L11/L12 Abu_1889 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Abu_1901 SM00382 ATPases associated with a variety of cellular activities Abu_1903 SM01230 Abu_1903 Abu_1920 SM00382 ATPases associated with a variety of cellular activities Abu_1920 SM01086 C-terminal, D2-small domain, of ClpB protein Abu_1930 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_1932 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Abu_1935 SM00226 Low molecular weight phosphatase family Abu_1940 SM00382 ATPases associated with a variety of cellular activities Abu_1949 SM00382 ATPases associated with a variety of cellular activities Abu_1949 SM00962 SRP54-type protein, GTPase domain Abu_1955 SM00028 Tetratricopeptide repeats Abu_1967 SM00448 cheY-homologous receiver domain Abu_1974 SM00382 ATPases associated with a variety of cellular activities Abu_1974 SM00962 SRP54-type protein, GTPase domain Abu_1974 SM00963 SRP54-type protein, helical bundle domain Abu_1981 SM01001 AIR carboxylase Abu_1984 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_1984 SM01049 Abu_1984 Abu_1987 SM00838 Elongation factor G C-terminus Abu_1987 SM00889 Elongation factor G, domain IV Abu_1995 SM00382 ATPases associated with a variety of cellular activities Abu_2007 SM00382 ATPases associated with a variety of cellular activities Abu_2008 SM00342 helix_turn_helix, arabinose operon control protein Abu_2017 SM00316 Ribosomal protein S1-like RNA-binding domain Abu_2017 SM00732 Likely ribonuclease with RNase H fold. Abu_2021 SM00342 helix_turn_helix, arabinose operon control protein Abu_2021 SM00871 Bacterial transcription activator, effector binding domain Abu_2033 SM00905 Dihydroneopterin aldolase Abu_2034 SM01207 Abu_2034 Abu_2047 SM00841 Elongation factor P, C-terminal Abu_2047 SM01185 Abu_2047 Abu_2049 SM00316 Ribosomal protein S1-like RNA-binding domain Abu_2052 SM00874 tRNA synthetase B5 domain Abu_2052 SM00896 Ferredoxin-fold anticodon binding domain Abu_2056 SM00825 Beta-ketoacyl synthase Abu_2058 SM00822 Abu_2058 Abu_2071 SM00937 Abu_2071 Abu_2087 SM00729 Elongator protein 3, MiaB family, Radical SAM Abu_2092 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Abu_2097 SM00387 Histidine kinase-like ATPases Abu_2097 SM00388 His Kinase A (phosphoacceptor) domain Abu_2098 SM00448 cheY-homologous receiver domain Abu_2098 SM00862 Transcriptional regulatory protein, C terminal Abu_2099 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Abu_2114 SM00382 ATPases associated with a variety of cellular activities Abu_2120 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Abu_2120 SM00245 tail specific protease Abu_2123 SM01211 Abu_2123 Abu_2125 SM00563 Phosphate acyltransferases Abu_2129 SM00836 DALR anticodon binding domain Abu_2129 SM01016 Arginyl tRNA synthetase N terminal dom Abu_2132 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Abu_2137 SM00830 Chorismate mutase type II Abu_2139 SM00861 Transketolase, pyrimidine binding domain Abu_2145 SM00100 Cyclic nucleotide-monophosphate binding domain Abu_2145 SM00419 helix_turn_helix, cAMP Regulatory protein Abu_2147 SM00986 Uracil DNA glycosylase superfamily Abu_2147 SM00987 UreE urease accessory protein, C-terminal domain Abu_2159 SM00267 diguanylate cyclase Abu_2163 SM00965 Secretin and TonB N terminus short domain Abu_2179 SM00327 von Willebrand factor (vWF) type A domain Abu_2191 SM00052 Putative diguanylate phosphodiesterase Abu_2191 SM00267 diguanylate cyclase Abu_2194 SM00925 MltA specific insert domain Abu_2205 SM00248 ankyrin repeats Abu_2206 SM00487 DEAD-like helicases superfamily Abu_2206 SM00490 helicase superfamily c-terminal domain Abu_2210 SM01228 Abu_2210 Abu_2214 SM00382 ATPases associated with a variety of cellular activities Abu_2214 SM00994 ClpX C4-type zinc finger Abu_2214 SM01086 C-terminal, D2-small domain, of ClpB protein Abu_2221 SM00518 AP endonuclease family 2 Abu_2228 SM00671 Sel1-like repeats. Abu_2229 SM00671 Sel1-like repeats. Abu_2231 SM00382 ATPases associated with a variety of cellular activities Abu_2235 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Abu_2235 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Abu_2235 SM00493 Abu_2235 Abu_2237 SM00729 Elongator protein 3, MiaB family, Radical SAM Abu_2237 SM00876 Biotin and Thiamin Synthesis associated domain Abu_2240 SM01192 Abu_2240 Abu_2240 SM01193 Abu_2240 Abu_2241 SM00382 ATPases associated with a variety of cellular activities Abu_2262 SM00481 DNA polymerase alpha chain like domain Abu_2283 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Abu_2288 SM00342 helix_turn_helix, arabinose operon control protein Abu_2291 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Abu_2292 SM00450 Rhodanese Homology Domain Abu_2293 SM00460 Transglutaminase/protease-like homologues Abu_2295 SM00460 Transglutaminase/protease-like homologues Abu_2296 SM00382 ATPases associated with a variety of cellular activities Abu_2300 SM00052 Putative diguanylate phosphodiesterase Abu_2314 SM00965 Secretin and TonB N terminus short domain Abu_2317 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Abu_2317 SM00091 PAS domain Abu_2317 SM00267 diguanylate cyclase Abu_2325 SM00448 cheY-homologous receiver domain Abu_2325 SM00862 Transcriptional regulatory protein, C terminal Abu_2326 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Abu_2328 SM00342 helix_turn_helix, arabinose operon control protein Abu_2329 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif.