locus-tag class description ACLO_0001 PF08299 Bacterial dnaA protein helix-turn-helix ACLO_0001 PF11638 DnaA N-terminal domain ACLO_0001 PF00308 Bacterial dnaA protein ACLO_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ACLO_0002 PF02767 DNA polymerase III beta subunit, central domain ACLO_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ACLO_0003 PF01751 Toprim domain ACLO_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ACLO_0003 PF00204 DNA gyrase B ACLO_0004 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACLO_0005 PF14489 QueF-like protein ACLO_0009 PF06779 Uncharacterised MFS-type transporter YbfB ACLO_0010 PF00849 RNA pseudouridylate synthase ACLO_0011 PF00206 Lyase ACLO_0011 PF10397 Adenylosuccinate lyase C-terminus ACLO_0012 PF02867 Ribonucleotide reductase, barrel domain ACLO_0012 PF03477 ATP cone domain ACLO_0012 PF00317 Ribonucleotide reductase, all-alpha domain ACLO_0013 PF00268 Ribonucleotide reductase, small chain ACLO_0015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACLO_0018 PF01928 CYTH domain ACLO_0019 PF03063 Prismane/CO dehydrogenase family ACLO_0021 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACLO_0021 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ACLO_0023 PF00318 Ribosomal protein S2 ACLO_0024 PF08240 Alcohol dehydrogenase GroES-like domain ACLO_0024 PF00107 Zinc-binding dehydrogenase ACLO_0026 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACLO_0026 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACLO_0027 PF02637 GatB domain ACLO_0027 PF02934 GatB/GatE catalytic domain ACLO_0028 PF09312 SurA N-terminal domain ACLO_0028 PF00639 PPIC-type PPIASE domain ACLO_0030 PF00072 Response regulator receiver domain ACLO_0030 PF00486 Transcriptional regulatory protein, C terminal ACLO_0031 PF08447 PAS fold ACLO_0031 PF00989 PAS fold ACLO_0031 PF00512 His Kinase A (phospho-acceptor) domain ACLO_0031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0032 PF02589 LUD domain ACLO_0033 PF02589 LUD domain ACLO_0033 PF13183 4Fe-4S dicluster domain ACLO_0033 PF11870 Domain of unknown function (DUF3390) ACLO_0034 PF02754 Cysteine-rich domain ACLO_0036 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACLO_0037 PF00364 Biotin-requiring enzyme ACLO_0038 PF02785 Biotin carboxylase C-terminal domain ACLO_0038 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACLO_0038 PF00289 Biotin carboxylase, N-terminal domain ACLO_0039 PF00270 DEAD/DEAH box helicase ACLO_0039 PF00271 Helicase conserved C-terminal domain ACLO_0040 PF01384 Phosphate transporter family ACLO_0042 PF13537 Glutamine amidotransferase domain ACLO_0042 PF00733 Asparagine synthase ACLO_0044 PF00881 Nitroreductase family ACLO_0045 PF13085 2Fe-2S iron-sulfur cluster binding domain ACLO_0046 PF02910 Fumarate reductase flavoprotein C-term ACLO_0046 PF00890 FAD binding domain ACLO_0048 PF02562 PhoH-like protein ACLO_0048 PF13638 PIN domain ACLO_0050 PF16193 AAA C-terminal domain ACLO_0050 PF01661 Macro domain ACLO_0050 PF12002 MgsA AAA+ ATPase C terminal ACLO_0050 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACLO_0051 PF01479 S4 domain ACLO_0051 PF00849 RNA pseudouridylate synthase ACLO_0052 PF00571 CBS domain ACLO_0052 PF01380 SIS domain ACLO_0053 PF17770 Ribonuclease J C-terminal domain ACLO_0053 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ACLO_0053 PF00753 Metallo-beta-lactamase superfamily ACLO_0054 PF00398 Ribosomal RNA adenine dimethylase ACLO_0055 PF00977 Histidine biosynthesis protein ACLO_0058 PF04055 Radical SAM superfamily ACLO_0059 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACLO_0060 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ACLO_0061 PF00072 Response regulator receiver domain ACLO_0061 PF00486 Transcriptional regulatory protein, C terminal ACLO_0062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0063 PF08448 PAS fold ACLO_0063 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0067 PF00873 AcrB/AcrD/AcrF family ACLO_0068 PF04264 YceI-like domain ACLO_0070 PF01554 MatE ACLO_0071 PF00742 Homoserine dehydrogenase ACLO_0071 PF03447 Homoserine dehydrogenase, NAD binding domain ACLO_0071 PF01842 ACT domain ACLO_0072 PF00155 Aminotransferase class I and II ACLO_0074 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACLO_0074 PF00588 SpoU rRNA Methylase family ACLO_0075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACLO_0076 PF01197 Ribosomal protein L31 ACLO_0085 PF01695 IstB-like ATP binding protein ACLO_0103 PF02222 ATP-grasp domain ACLO_0104 PF10135 Rod binding protein ACLO_0104 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ACLO_0105 PF01678 Diaminopimelate epimerase ACLO_0106 PF01121 Dephospho-CoA kinase ACLO_0107 PF17284 Spermidine synthase tetramerisation domain ACLO_0108 PF02769 AIR synthase related protein, C-terminal domain ACLO_0108 PF00586 AIR synthase related protein, N-terminal domain ACLO_0109 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACLO_0109 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACLO_0110 PF02678 Pirin ACLO_0110 PF17954 Quercetinase C-terminal cupin domain ACLO_0111 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ACLO_0113 PF01047 MarR family ACLO_0114 PF00266 Aminotransferase class-V ACLO_0115 PF13393 Histidyl-tRNA synthetase ACLO_0116 PF00709 Adenylosuccinate synthetase ACLO_0118 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ACLO_0118 PF00117 Glutamine amidotransferase class-I ACLO_0121 PF02542 YgbB family ACLO_0121 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ACLO_0124 PF01964 Radical SAM ThiC family ACLO_0125 PF01883 Iron-sulfur cluster assembly protein ACLO_0125 PF10609 NUBPL iron-transfer P-loop NTPase ACLO_0127 PF01502 Phosphoribosyl-AMP cyclohydrolase ACLO_0127 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ACLO_0129 PF01063 Amino-transferase class IV ACLO_0131 PF00925 GTP cyclohydrolase II ACLO_0132 PF00672 HAMP domain ACLO_0132 PF02203 Tar ligand binding domain homologue ACLO_0132 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_0134 PF02310 B12 binding domain ACLO_0134 PF02574 Homocysteine S-methyltransferase ACLO_0134 PF00809 Pterin binding enzyme ACLO_0134 PF02965 Vitamin B12 dependent methionine synthase, activation domain ACLO_0134 PF02607 B12 binding domain ACLO_0135 PF00578 AhpC/TSA family ACLO_0135 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACLO_0138 PF00465 Iron-containing alcohol dehydrogenase ACLO_0139 PF00512 His Kinase A (phospho-acceptor) domain ACLO_0139 PF00989 PAS fold ACLO_0139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0139 PF08447 PAS fold ACLO_0141 PF07943 Penicillin-binding protein 5, C-terminal domain ACLO_0141 PF00768 D-alanyl-D-alanine carboxypeptidase ACLO_0144 PF02664 S-Ribosylhomocysteinase (LuxS) ACLO_0148 PF07273 Protein of unknown function (DUF1439) ACLO_0149 PF02405 Permease MlaE ACLO_0150 PF00005 ABC transporter ACLO_0150 PF09383 NIL domain ACLO_0153 PF05145 Transition state regulatory protein AbrB ACLO_0154 PF01638 HxlR-like helix-turn-helix ACLO_0155 PF02525 Flavodoxin-like fold ACLO_0156 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACLO_0157 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACLO_0157 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ACLO_0159 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ACLO_0160 PF13419 Haloacid dehalogenase-like hydrolase ACLO_0162 PF00380 Ribosomal protein S9/S16 ACLO_0163 PF00572 Ribosomal protein L13 ACLO_0164 PF00512 His Kinase A (phospho-acceptor) domain ACLO_0164 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0165 PF00486 Transcriptional regulatory protein, C terminal ACLO_0165 PF00072 Response regulator receiver domain ACLO_0167 PF01895 PhoU domain ACLO_0168 PF00005 ABC transporter ACLO_0169 PF00528 Binding-protein-dependent transport system inner membrane component ACLO_0170 PF00528 Binding-protein-dependent transport system inner membrane component ACLO_0171 PF12849 PBP superfamily domain ACLO_0173 PF03462 PCRF domain ACLO_0173 PF00472 RF-1 domain ACLO_0174 PF01649 Ribosomal protein S20 ACLO_0175 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACLO_0175 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACLO_0175 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACLO_0175 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACLO_0176 PF01252 Signal peptidase (SPase) II ACLO_0177 PF00330 Aconitase family (aconitate hydratase) ACLO_0178 PF12804 MobA-like NTP transferase domain ACLO_0179 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACLO_0182 PF00453 Ribosomal protein L20 ACLO_0183 PF01632 Ribosomal protein L35 ACLO_0184 PF05198 Translation initiation factor IF-3, N-terminal domain ACLO_0184 PF00707 Translation initiation factor IF-3, C-terminal domain ACLO_0185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACLO_0185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACLO_0185 PF03129 Anticodon binding domain ACLO_0191 PF13288 DXP reductoisomerase C-terminal domain ACLO_0191 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACLO_0191 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ACLO_0195 PF00814 Glycoprotease family ACLO_0196 PF01253 Translation initiation factor SUI1 ACLO_0197 PF01256 Carbohydrate kinase ACLO_0197 PF03853 YjeF-related protein N-terminus ACLO_0198 PF03091 CutA1 divalent ion tolerance protein ACLO_0199 PF05690 Thiazole biosynthesis protein ThiG ACLO_0210 PF13784 Fic/DOC family N-terminal ACLO_0210 PF02661 Fic/DOC family ACLO_0212 PF10544 T5orf172 domain ACLO_0215 PF01022 Bacterial regulatory protein, arsR family ACLO_0216 PF00486 Transcriptional regulatory protein, C terminal ACLO_0216 PF00072 Response regulator receiver domain ACLO_0218 PF02661 Fic/DOC family ACLO_0219 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ACLO_0220 PF02796 Helix-turn-helix domain of resolvase ACLO_0220 PF00239 Resolvase, N terminal domain ACLO_0222 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ACLO_0223 PF00403 Heavy-metal-associated domain ACLO_0225 PF00873 AcrB/AcrD/AcrF family ACLO_0230 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ACLO_0230 PF01348 Type II intron maturase ACLO_0232 PF00578 AhpC/TSA family ACLO_0233 PF00486 Transcriptional regulatory protein, C terminal ACLO_0233 PF00072 Response regulator receiver domain ACLO_0236 PF00486 Transcriptional regulatory protein, C terminal ACLO_0236 PF00072 Response regulator receiver domain ACLO_0243 PF00403 Heavy-metal-associated domain ACLO_0246 PF05275 Copper resistance protein B precursor (CopB) ACLO_0247 PF07732 Multicopper oxidase ACLO_0247 PF07731 Multicopper oxidase ACLO_0247 PF00394 Multicopper oxidase ACLO_0252 PF03471 Transporter associated domain ACLO_0252 PF00571 CBS domain ACLO_0253 PF01594 AI-2E family transporter ACLO_0254 PF02416 mttA/Hcf106 family ACLO_0258 PF02673 Bacitracin resistance protein BacA ACLO_0276 PF01695 IstB-like ATP binding protein ACLO_0279 PF13635 Domain of unknown function (DUF4143) ACLO_0279 PF13173 AAA domain ACLO_0285 PF00589 Phage integrase family ACLO_0289 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit ACLO_0290 PF08502 LeuA allosteric (dimerisation) domain ACLO_0290 PF00682 HMGL-like ACLO_0293 PF01699 Sodium/calcium exchanger protein ACLO_0294 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_0294 PF02203 Tar ligand binding domain homologue ACLO_0294 PF00672 HAMP domain ACLO_0297 PF08447 PAS fold ACLO_0297 PF08448 PAS fold ACLO_0297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0298 PF00072 Response regulator receiver domain ACLO_0298 PF02954 Bacterial regulatory protein, Fis family ACLO_0298 PF00158 Sigma-54 interaction domain ACLO_0300 PF00664 ABC transporter transmembrane region ACLO_0300 PF00005 ABC transporter ACLO_0300 PF03412 Peptidase C39 family ACLO_0303 PF00989 PAS fold ACLO_0303 PF00512 His Kinase A (phospho-acceptor) domain ACLO_0303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0304 PF00456 Transketolase, thiamine diphosphate binding domain ACLO_0304 PF02779 Transketolase, pyrimidine binding domain ACLO_0304 PF02780 Transketolase, C-terminal domain ACLO_0307 PF03788 LrgA family ACLO_0308 PF04172 LrgB-like family ACLO_0310 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ACLO_0313 PF00916 Sulfate permease family ACLO_0313 PF01740 STAS domain ACLO_0314 PF08448 PAS fold ACLO_0314 PF01739 CheR methyltransferase, SAM binding domain ACLO_0314 PF01339 CheB methylesterase ACLO_0314 PF03705 CheR methyltransferase, all-alpha domain ACLO_0315 PF00563 EAL domain ACLO_0315 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0315 PF03707 Bacterial signalling protein N terminal repeat ACLO_0317 PF00501 AMP-binding enzyme ACLO_0317 PF01553 Acyltransferase ACLO_0319 PF01966 HD domain ACLO_0319 PF08335 GlnD PII-uridylyltransferase ACLO_0321 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0321 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ACLO_0321 PF00989 PAS fold ACLO_0321 PF17203 Single cache domain 3 ACLO_0324 PF00909 Ammonium Transporter Family ACLO_0325 PF00543 Nitrogen regulatory protein P-II ACLO_0326 PF00909 Ammonium Transporter Family ACLO_0327 PF00543 Nitrogen regulatory protein P-II ACLO_0329 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACLO_0329 PF02154 Flagellar motor switch protein FliM ACLO_0330 PF02119 Flagellar P-ring protein ACLO_0332 PF01313 Bacterial export proteins, family 3 ACLO_0337 PF02107 Flagellar L-ring protein ACLO_0338 PF00460 Flagella basal body rod protein ACLO_0338 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACLO_0339 PF07195 Flagellar hook-associated protein 2 C-terminus ACLO_0339 PF02465 Flagellar hook-associated protein 2 N-terminus ACLO_0340 PF02561 Flagellar protein FliS ACLO_0342 PF01171 PP-loop family ACLO_0343 PF04055 Radical SAM superfamily ACLO_0343 PF00919 Uncharacterized protein family UPF0004 ACLO_0343 PF18693 TRAM domain ACLO_0344 PF02569 Pantoate-beta-alanine ligase ACLO_0345 PF00528 Binding-protein-dependent transport system inner membrane component ACLO_0346 PF01648 4'-phosphopantetheinyl transferase superfamily ACLO_0349 PF00923 Transaldolase/Fructose-6-phosphate aldolase ACLO_0350 PF01474 Class-II DAHP synthetase family ACLO_0351 PF03502 Nucleoside-specific channel-forming protein, Tsx ACLO_0352 PF03960 ArsC family ACLO_0353 PF02686 Glu-tRNAGln amidotransferase C subunit ACLO_0354 PF01702 Queuine tRNA-ribosyltransferase ACLO_0356 PF00155 Aminotransferase class I and II ACLO_0358 PF02875 Mur ligase family, glutamate ligase domain ACLO_0358 PF08245 Mur ligase middle domain ACLO_0358 PF01225 Mur ligase family, catalytic domain ACLO_0360 PF04748 Divergent polysaccharide deacetylase ACLO_0361 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ACLO_0361 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACLO_0362 PF00773 RNB domain ACLO_0364 PF01250 Ribosomal protein S6 ACLO_0365 PF00436 Single-strand binding protein family ACLO_0366 PF01084 Ribosomal protein S18 ACLO_0368 PF09190 DALR domain ACLO_0368 PF01406 tRNA synthetases class I (C) catalytic domain ACLO_0369 PF13184 NusA-like KH domain ACLO_0369 PF08529 NusA N-terminal domain ACLO_0371 PF00919 Uncharacterized protein family UPF0004 ACLO_0371 PF04055 Radical SAM superfamily ACLO_0371 PF01938 TRAM domain ACLO_0372 PF04028 Domain of unknown function (DUF374) ACLO_0374 PF04055 Radical SAM superfamily ACLO_0376 PF00484 Carbonic anhydrase ACLO_0377 PF00155 Aminotransferase class I and II ACLO_0378 PF02021 Uncharacterised protein family UPF0102 ACLO_0381 PF05736 OprF membrane domain ACLO_0381 PF00691 OmpA family ACLO_0382 PF00391 PEP-utilising enzyme, mobile domain ACLO_0382 PF00224 Pyruvate kinase, barrel domain ACLO_0382 PF02887 Pyruvate kinase, alpha/beta domain ACLO_0383 PF00690 Cation transporter/ATPase, N-terminus ACLO_0383 PF00689 Cation transporting ATPase, C-terminus ACLO_0385 PF00202 Aminotransferase class-III ACLO_0387 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACLO_0387 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACLO_0388 PF00425 chorismate binding enzyme ACLO_0389 PF01063 Amino-transferase class IV ACLO_0392 PF03591 AzlC protein ACLO_0393 PF05437 Branched-chain amino acid transport protein (AzlD) ACLO_0394 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACLO_0394 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACLO_0395 PF02504 Fatty acid synthesis protein ACLO_0396 PF01783 Ribosomal L32p protein family ACLO_0398 PF00334 Nucleoside diphosphate kinase ACLO_0399 PF00037 4Fe-4S binding domain ACLO_0400 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACLO_0400 PF00578 AhpC/TSA family ACLO_0401 PF07498 Rho termination factor, N-terminal domain ACLO_0401 PF07497 Rho termination factor, RNA-binding domain ACLO_0401 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACLO_0402 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACLO_0402 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACLO_0403 PF01177 Asp/Glu/Hydantoin racemase ACLO_0404 PF12170 DNA polymerase III tau subunit V interacting with alpha ACLO_0404 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ACLO_0404 PF12169 DNA polymerase III subunits gamma and tau domain III ACLO_0406 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ACLO_0406 PF03900 Porphobilinogen deaminase, C-terminal domain ACLO_0408 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0408 PF00563 EAL domain ACLO_0409 PF04303 PrpF protein ACLO_0410 PF00694 Aconitase C-terminal domain ACLO_0410 PF00330 Aconitase family (aconitate hydratase) ACLO_0411 PF00285 Citrate synthase, C-terminal domain ACLO_0414 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACLO_0414 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACLO_0419 PF00270 DEAD/DEAH box helicase ACLO_0419 PF00271 Helicase conserved C-terminal domain ACLO_0419 PF00570 HRDC domain ACLO_0419 PF09382 RQC domain ACLO_0419 PF16124 RecQ zinc-binding ACLO_0420 PF13649 Methyltransferase domain ACLO_0423 PF01863 Protein of unknown function DUF45 ACLO_0424 PF00350 Dynamin family ACLO_0425 PF00350 Dynamin family ACLO_0426 PF13183 4Fe-4S dicluster domain ACLO_0426 PF13085 2Fe-2S iron-sulfur cluster binding domain ACLO_0427 PF00890 FAD binding domain ACLO_0427 PF02910 Fumarate reductase flavoprotein C-term ACLO_0428 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ACLO_0429 PF00361 Proton-conducting membrane transporter ACLO_0430 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ACLO_0430 PF00361 Proton-conducting membrane transporter ACLO_0431 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACLO_0431 PF00361 Proton-conducting membrane transporter ACLO_0432 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACLO_0433 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACLO_0434 PF12838 4Fe-4S dicluster domain ACLO_0435 PF00146 NADH dehydrogenase ACLO_0436 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ACLO_0436 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACLO_0436 PF00384 Molybdopterin oxidoreductase ACLO_0437 PF00285 Citrate synthase, C-terminal domain ACLO_0438 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACLO_0438 PF10531 SLBB domain ACLO_0438 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACLO_0440 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACLO_0440 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACLO_0441 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACLO_0442 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACLO_0443 PF00155 Aminotransferase class I and II ACLO_0444 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ACLO_0445 PF06738 Putative threonine/serine exporter ACLO_0445 PF12821 Threonine/Serine exporter, ThrE ACLO_0446 PF06738 Putative threonine/serine exporter ACLO_0448 PF03309 Type III pantothenate kinase ACLO_0449 PF01634 ATP phosphoribosyltransferase ACLO_0452 PF08448 PAS fold ACLO_0452 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0453 PF00579 tRNA synthetases class I (W and Y) ACLO_0456 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACLO_0456 PF02403 Seryl-tRNA synthetase N-terminal domain ACLO_0459 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_0459 PF08447 PAS fold ACLO_0463 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ACLO_0464 PF00037 4Fe-4S binding domain ACLO_0464 PF12801 4Fe-4S binding domain ACLO_0465 PF12838 4Fe-4S dicluster domain ACLO_0465 PF12800 4Fe-4S binding domain ACLO_0466 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACLO_0466 PF00384 Molybdopterin oxidoreductase ACLO_0466 PF01568 Molydopterin dinucleotide binding domain ACLO_0466 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACLO_0467 PF03480 Bacterial extracellular solute-binding protein, family 7 ACLO_0468 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ACLO_0469 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ACLO_0470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0470 PF08447 PAS fold ACLO_0470 PF08448 PAS fold ACLO_0471 PF00072 Response regulator receiver domain ACLO_0472 PF03737 Aldolase/RraA ACLO_0473 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACLO_0476 PF02885 Glycosyl transferase family, helical bundle domain ACLO_0476 PF00591 Glycosyl transferase family, a/b domain ACLO_0477 PF06463 Molybdenum Cofactor Synthesis C ACLO_0477 PF04055 Radical SAM superfamily ACLO_0480 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ACLO_0480 PF02222 ATP-grasp domain ACLO_0481 PF00731 AIR carboxylase ACLO_0482 PF00312 Ribosomal protein S15 ACLO_0483 PF02082 Transcriptional regulator ACLO_0486 PF08521 Two-component sensor kinase N-terminal ACLO_0486 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0486 PF00512 His Kinase A (phospho-acceptor) domain ACLO_0487 PF00072 Response regulator receiver domain ACLO_0487 PF00486 Transcriptional regulatory protein, C terminal ACLO_0489 PF01116 Fructose-bisphosphate aldolase class-II ACLO_0490 PF08402 TOBE domain ACLO_0490 PF00005 ABC transporter ACLO_0491 PF00528 Binding-protein-dependent transport system inner membrane component ACLO_0492 PF00528 Binding-protein-dependent transport system inner membrane component ACLO_0493 PF13416 Bacterial extracellular solute-binding protein ACLO_0494 PF00313 'Cold-shock' DNA-binding domain ACLO_0495 PF02472 Biopolymer transport protein ExbD/TolR ACLO_0496 PF01618 MotA/TolQ/ExbB proton channel family ACLO_0498 PF00989 PAS fold ACLO_0498 PF00512 His Kinase A (phospho-acceptor) domain ACLO_0498 PF08447 PAS fold ACLO_0498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0499 PF03707 Bacterial signalling protein N terminal repeat ACLO_0499 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0499 PF00563 EAL domain ACLO_0500 PF01202 Shikimate kinase ACLO_0501 PF00815 Histidinol dehydrogenase ACLO_0503 PF00348 Polyprenyl synthetase ACLO_0504 PF01488 Shikimate / quinate 5-dehydrogenase ACLO_0504 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ACLO_0504 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ACLO_0505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACLO_0505 PF04073 Aminoacyl-tRNA editing domain ACLO_0505 PF03129 Anticodon binding domain ACLO_0506 PF00924 Mechanosensitive ion channel ACLO_0506 PF05552 Conserved TM helix ACLO_0507 PF12627 Probable RNA and SrmB- binding site of polymerase A ACLO_0507 PF01743 Poly A polymerase head domain ACLO_0507 PF01966 HD domain ACLO_0512 PF02699 Preprotein translocase subunit ACLO_0513 PF02355 Protein export membrane protein ACLO_0514 PF02355 Protein export membrane protein ACLO_0514 PF07549 SecD/SecF GG Motif ACLO_0516 PF09334 tRNA synthetases class I (M) ACLO_0516 PF00133 tRNA synthetases class I (I, L, M and V) ACLO_0516 PF13603 Leucyl-tRNA synthetase, Domain 2 ACLO_0518 PF02875 Mur ligase family, glutamate ligase domain ACLO_0518 PF08245 Mur ligase middle domain ACLO_0520 PF00999 Sodium/hydrogen exchanger family ACLO_0520 PF02254 TrkA-N domain ACLO_0526 PF02086 D12 class N6 adenine-specific DNA methyltransferase ACLO_0529 PF04556 DpnII restriction endonuclease ACLO_0532 PF01555 DNA methylase ACLO_0533 PF02559 CarD-like/TRCF domain ACLO_0533 PF00270 DEAD/DEAH box helicase ACLO_0533 PF00271 Helicase conserved C-terminal domain ACLO_0533 PF03461 TRCF domain ACLO_0533 PF17757 UvrB interaction domain ACLO_0535 PF00563 EAL domain ACLO_0535 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0535 PF00360 Phytochrome region ACLO_0535 PF01590 GAF domain ACLO_0537 PF00486 Transcriptional regulatory protein, C terminal ACLO_0537 PF00072 Response regulator receiver domain ACLO_0540 PF02743 Cache domain ACLO_0540 PF00672 HAMP domain ACLO_0540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_0541 PF00072 Response regulator receiver domain ACLO_0541 PF02954 Bacterial regulatory protein, Fis family ACLO_0541 PF00158 Sigma-54 interaction domain ACLO_0542 PF07536 HWE histidine kinase ACLO_0542 PF13426 PAS domain ACLO_0542 PF13581 Histidine kinase-like ATPase domain ACLO_0543 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0543 PF00672 HAMP domain ACLO_0543 PF00512 His Kinase A (phospho-acceptor) domain ACLO_0544 PF13277 YmdB-like protein ACLO_0547 PF01209 ubiE/COQ5 methyltransferase family ACLO_0548 PF02601 Exonuclease VII, large subunit ACLO_0548 PF13742 OB-fold nucleic acid binding domain ACLO_0549 PF01584 CheW-like domain ACLO_0550 PF00072 Response regulator receiver domain ACLO_0550 PF02954 Bacterial regulatory protein, Fis family ACLO_0550 PF00158 Sigma-54 interaction domain ACLO_0551 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACLO_0553 PF02261 Aspartate decarboxylase ACLO_0554 PF02575 YbaB/EbfC DNA-binding family ACLO_0555 PF00348 Polyprenyl synthetase ACLO_0556 PF00166 Chaperonin 10 Kd subunit ACLO_0557 PF00118 TCP-1/cpn60 chaperonin family ACLO_0558 PF00459 Inositol monophosphatase family ACLO_0559 PF01380 SIS domain ACLO_0562 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACLO_0562 PF02772 S-adenosylmethionine synthetase, central domain ACLO_0562 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACLO_0563 PF01039 Carboxyl transferase domain ACLO_0563 PF17848 Acetyl-coA carboxylase zinc finger domain ACLO_0564 PF02581 Thiamine monophosphate synthase ACLO_0565 PF02590 Predicted SPOUT methyltransferase ACLO_0567 PF01207 Dihydrouridine synthase (Dus) ACLO_0569 PF00004 ATPase family associated with various cellular activities (AAA) ACLO_0569 PF17862 AAA+ lid domain ACLO_0569 PF01434 Peptidase family M41 ACLO_0570 PF00682 HMGL-like ACLO_0570 PF08502 LeuA allosteric (dimerisation) domain ACLO_0573 PF00488 MutS domain V ACLO_0573 PF05188 MutS domain II ACLO_0573 PF05190 MutS family domain IV ACLO_0573 PF05192 MutS domain III ACLO_0573 PF01624 MutS domain I ACLO_0576 PF03334 Na+/H+ antiporter subunit ACLO_0580 PF00361 Proton-conducting membrane transporter ACLO_0581 PF00361 Proton-conducting membrane transporter ACLO_0582 PF00361 Proton-conducting membrane transporter ACLO_0583 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0584 PF00977 Histidine biosynthesis protein ACLO_0585 PF01370 NAD dependent epimerase/dehydratase family ACLO_0585 PF08338 Domain of unknown function (DUF1731) ACLO_0586 PF00117 Glutamine amidotransferase class-I ACLO_0590 PF06067 Domain of unknown function (DUF932) ACLO_0598 PF02384 N-6 DNA Methylase ACLO_0599 PF01420 Type I restriction modification DNA specificity domain ACLO_0600 PF13166 AAA domain ACLO_0602 PF12728 Helix-turn-helix domain ACLO_0602 PF02661 Fic/DOC family ACLO_0603 PF18766 SWI2/SNF2 ATPase ACLO_0603 PF11867 Domain of unknown function (DUF3387) ACLO_0603 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACLO_0610 PF06421 GTP-binding protein LepA C-terminus ACLO_0610 PF03144 Elongation factor Tu domain 2 ACLO_0610 PF00009 Elongation factor Tu GTP binding domain ACLO_0610 PF00679 Elongation factor G C-terminus ACLO_0611 PF05736 OprF membrane domain ACLO_0611 PF00691 OmpA family ACLO_0612 PF00691 OmpA family ACLO_0612 PF05736 OprF membrane domain ACLO_0613 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACLO_0613 PF14572 Phosphoribosyl synthetase-associated domain ACLO_0618 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACLO_0619 PF01321 Creatinase/Prolidase N-terminal domain ACLO_0619 PF00557 Metallopeptidase family M24 ACLO_0620 PF01220 Dehydroquinase class II ACLO_0621 PF01979 Amidohydrolase family ACLO_0622 PF01343 Peptidase family S49 ACLO_0623 PF00871 Acetokinase family ACLO_0624 PF01515 Phosphate acetyl/butaryl transferase ACLO_0625 PF00871 Acetokinase family ACLO_0627 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACLO_0627 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACLO_0627 PF02811 PHP domain ACLO_0627 PF00929 Exonuclease ACLO_0627 PF14579 Helix-hairpin-helix motif ACLO_0629 PF00474 Sodium:solute symporter family ACLO_0631 PF00474 Sodium:solute symporter family ACLO_0633 PF00929 Exonuclease ACLO_0635 PF00474 Sodium:solute symporter family ACLO_0637 PF00072 Response regulator receiver domain ACLO_0637 PF00486 Transcriptional regulatory protein, C terminal ACLO_0638 PF13426 PAS domain ACLO_0638 PF00512 His Kinase A (phospho-acceptor) domain ACLO_0638 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0638 PF00672 HAMP domain ACLO_0647 PF02464 Competence-damaged protein ACLO_0647 PF00994 Probable molybdopterin binding domain ACLO_0647 PF18146 Damage-inducible protein CinA KH domain ACLO_0648 PF06039 Malate:quinone oxidoreductase (Mqo) ACLO_0649 PF00133 tRNA synthetases class I (I, L, M and V) ACLO_0649 PF08264 Anticodon-binding domain of tRNA ACLO_0653 PF02875 Mur ligase family, glutamate ligase domain ACLO_0653 PF08245 Mur ligase middle domain ACLO_0654 PF08448 PAS fold ACLO_0654 PF08447 PAS fold ACLO_0654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0657 PF01882 Protein of unknown function DUF58 ACLO_0658 PF17863 AAA lid domain ACLO_0658 PF07726 ATPase family associated with various cellular activities (AAA) ACLO_0659 PF00318 Ribosomal protein S2 ACLO_0660 PF00889 Elongation factor TS ACLO_0661 PF00005 ABC transporter ACLO_0663 PF00625 Guanylate kinase ACLO_0664 PF08448 PAS fold ACLO_0664 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0664 PF00563 EAL domain ACLO_0665 PF00403 Heavy-metal-associated domain ACLO_0668 PF00005 ABC transporter ACLO_0668 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACLO_0669 PF00762 Ferrochelatase ACLO_0670 PF01871 AMMECR1 ACLO_0671 PF01875 Memo-like protein ACLO_0672 PF02698 DUF218 domain ACLO_0673 PF00005 ABC transporter ACLO_0674 PF00950 ABC 3 transport family ACLO_0676 PF02690 Na+/Pi-cotransporter ACLO_0678 PF13509 S1 domain ACLO_0678 PF17783 CvfB-like winged helix domain ACLO_0679 PF08534 Redoxin ACLO_0682 PF00174 Oxidoreductase molybdopterin binding domain ACLO_0683 PF01794 Ferric reductase like transmembrane component ACLO_0684 PF13533 Biotin-lipoyl like ACLO_0685 PF00873 AcrB/AcrD/AcrF family ACLO_0687 PF13361 UvrD-like helicase C-terminal domain ACLO_0687 PF00580 UvrD/REP helicase N-terminal domain ACLO_0688 PF02254 TrkA-N domain ACLO_0688 PF02080 TrkA-C domain ACLO_0688 PF00999 Sodium/hydrogen exchanger family ACLO_0689 PF00174 Oxidoreductase molybdopterin binding domain ACLO_0690 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACLO_0697 PF03190 Protein of unknown function, DUF255 ACLO_0704 PF00753 Metallo-beta-lactamase superfamily ACLO_0707 PF10458 Valyl tRNA synthetase tRNA binding arm ACLO_0707 PF00133 tRNA synthetases class I (I, L, M and V) ACLO_0707 PF08264 Anticodon-binding domain of tRNA ACLO_0708 PF01554 MatE ACLO_0709 PF00583 Acetyltransferase (GNAT) family ACLO_0711 PF09962 Uncharacterized conserved protein (DUF2196) ACLO_0712 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACLO_0713 PF00873 AcrB/AcrD/AcrF family ACLO_0717 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0719 PF07690 Major Facilitator Superfamily ACLO_0720 PF01725 Ham1 family ACLO_0724 PF03807 NADP oxidoreductase coenzyme F420-dependent ACLO_0724 PF14748 Pyrroline-5-carboxylate reductase dimerisation ACLO_0725 PF13525 Outer membrane lipoprotein ACLO_0726 PF00004 ATPase family associated with various cellular activities (AAA) ACLO_0726 PF05362 Lon protease (S16) C-terminal proteolytic domain ACLO_0726 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACLO_0733 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACLO_0736 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ACLO_0739 PF00529 HlyD membrane-fusion protein of T1SS ACLO_0739 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACLO_0740 PF00873 AcrB/AcrD/AcrF family ACLO_0742 PF00893 Small Multidrug Resistance protein ACLO_0744 PF08448 PAS fold ACLO_0744 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0745 PF06977 SdiA-regulated ACLO_0746 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACLO_0746 PF00289 Biotin carboxylase, N-terminal domain ACLO_0746 PF02785 Biotin carboxylase C-terminal domain ACLO_0747 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_0747 PF08447 PAS fold ACLO_0748 PF00672 HAMP domain ACLO_0748 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_0748 PF02203 Tar ligand binding domain homologue ACLO_0749 PF00892 EamA-like transporter family ACLO_0754 PF02657 Fe-S metabolism associated domain ACLO_0755 PF00266 Aminotransferase class-V ACLO_0757 PF00005 ABC transporter ACLO_0758 PF01458 Uncharacterized protein family (UPF0051) ACLO_0759 PF00266 Aminotransferase class-V ACLO_0760 PF04324 BFD-like [2Fe-2S] binding domain ACLO_0760 PF01592 NifU-like N terminal domain ACLO_0760 PF01106 NifU-like domain ACLO_0762 PF00571 CBS domain ACLO_0762 PF01769 Divalent cation transporter ACLO_0762 PF03448 MgtE intracellular N domain ACLO_0763 PF01925 Sulfite exporter TauE/SafE ACLO_0768 PF00206 Lyase ACLO_0768 PF14698 Argininosuccinate lyase C-terminal ACLO_0769 PF00072 Response regulator receiver domain ACLO_0769 PF01584 CheW-like domain ACLO_0770 PF00899 ThiF family ACLO_0771 PF03449 Transcription elongation factor, N-terminal ACLO_0771 PF01272 Transcription elongation factor, GreA/GreB, C-term ACLO_0772 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACLO_0772 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACLO_0775 PF04851 Type III restriction enzyme, res subunit ACLO_0775 PF00271 Helicase conserved C-terminal domain ACLO_0775 PF02151 UvrB/uvrC motif ACLO_0775 PF12344 Ultra-violet resistance protein B ACLO_0775 PF17757 UvrB interaction domain ACLO_0776 PF10576 Iron-sulfur binding domain of endonuclease III ACLO_0776 PF00633 Helix-hairpin-helix motif ACLO_0776 PF00730 HhH-GPD superfamily base excision DNA repair protein ACLO_0783 PF02502 Ribose/Galactose Isomerase ACLO_0784 PF10502 Signal peptidase, peptidase S26 ACLO_0785 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACLO_0785 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACLO_0786 PF14693 Ribosomal protein TL5, C-terminal domain ACLO_0786 PF01386 Ribosomal L25p family ACLO_0787 PF01195 Peptidyl-tRNA hydrolase ACLO_0792 PF00579 tRNA synthetases class I (W and Y) ACLO_0792 PF01479 S4 domain ACLO_0793 PF13291 ACT domain ACLO_0793 PF04607 Region found in RelA / SpoT proteins ACLO_0793 PF02824 TGS domain ACLO_0794 PF01192 RNA polymerase Rpb6 ACLO_0795 PF00696 Amino acid kinase family ACLO_0797 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ACLO_0798 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ACLO_0799 PF04715 Anthranilate synthase component I, N terminal region ACLO_0799 PF00425 chorismate binding enzyme ACLO_0801 PF00464 Serine hydroxymethyltransferase ACLO_0802 PF01336 OB-fold nucleic acid binding domain ACLO_0802 PF00152 tRNA synthetases class II (D, K and N) ACLO_0804 PF08448 PAS fold ACLO_0804 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0804 PF08447 PAS fold ACLO_0805 PF04551 GcpE protein ACLO_0806 PF17151 Periplasmic sensor domain ACLO_0806 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0807 PF03796 DnaB-like helicase C terminal domain ACLO_0807 PF00772 DnaB-like helicase N terminal domain ACLO_0808 PF07963 Prokaryotic N-terminal methylation motif ACLO_0808 PF08334 Type II secretion system (T2SS), protein G ACLO_0809 PF14743 DNA ligase OB-like domain ACLO_0809 PF01068 ATP dependent DNA ligase domain ACLO_0810 PF00156 Phosphoribosyl transferase domain ACLO_0811 PF00291 Pyridoxal-phosphate dependent enzyme ACLO_0813 PF00883 Cytosol aminopeptidase family, catalytic domain ACLO_0813 PF02789 Cytosol aminopeptidase family, N-terminal domain ACLO_0815 PF02472 Biopolymer transport protein ExbD/TolR ACLO_0816 PF01618 MotA/TolQ/ExbB proton channel family ACLO_0819 PF12704 MacB-like periplasmic core domain ACLO_0819 PF02687 FtsX-like permease family ACLO_0819 PF00005 ABC transporter ACLO_0820 PF12704 MacB-like periplasmic core domain ACLO_0820 PF02687 FtsX-like permease family ACLO_0820 PF00005 ABC transporter ACLO_0824 PF01261 Xylose isomerase-like TIM barrel ACLO_0838 PF01475 Ferric uptake regulator family ACLO_0841 PF17910 FeoB cytosolic helical domain ACLO_0841 PF02421 Ferrous iron transport protein B ACLO_0841 PF04023 FeoA domain ACLO_0841 PF07670 Nucleoside recognition ACLO_0841 PF07664 Ferrous iron transport protein B C terminus ACLO_0842 PF04023 FeoA domain ACLO_0844 PF00005 ABC transporter ACLO_0846 PF10636 Hemin uptake protein hemP ACLO_0847 PF00593 TonB dependent receptor ACLO_0847 PF07715 TonB-dependent Receptor Plug Domain ACLO_0848 PF18331 PKHD-type hydroxylase C-terminal domain ACLO_0848 PF13640 2OG-Fe(II) oxygenase superfamily ACLO_0849 PF01070 FMN-dependent dehydrogenase ACLO_0850 PF07715 TonB-dependent Receptor Plug Domain ACLO_0850 PF00593 TonB dependent receptor ACLO_0853 PF01740 STAS domain ACLO_0853 PF13426 PAS domain ACLO_0855 PF00586 AIR synthase related protein, N-terminal domain ACLO_0855 PF02769 AIR synthase related protein, C-terminal domain ACLO_0856 PF01142 tRNA pseudouridine synthase D (TruD) ACLO_0859 PF01330 RuvA N terminal domain ACLO_0859 PF07499 RuvA, C-terminal domain ACLO_0860 PF07478 D-ala D-ala ligase C-terminus ACLO_0860 PF01820 D-ala D-ala ligase N-terminus ACLO_0861 PF00561 alpha/beta hydrolase fold ACLO_0862 PF01225 Mur ligase family, catalytic domain ACLO_0862 PF08245 Mur ligase middle domain ACLO_0862 PF02875 Mur ligase family, glutamate ligase domain ACLO_0865 PF01266 FAD dependent oxidoreductase ACLO_0866 PF00338 Ribosomal protein S10p/S20e ACLO_0867 PF00297 Ribosomal protein L3 ACLO_0868 PF00573 Ribosomal protein L4/L1 family ACLO_0869 PF00276 Ribosomal protein L23 ACLO_0870 PF00181 Ribosomal Proteins L2, RNA binding domain ACLO_0870 PF03947 Ribosomal Proteins L2, C-terminal domain ACLO_0871 PF00203 Ribosomal protein S19 ACLO_0872 PF00237 Ribosomal protein L22p/L17e ACLO_0873 PF07650 KH domain ACLO_0873 PF00189 Ribosomal protein S3, C-terminal domain ACLO_0874 PF00252 Ribosomal protein L16p/L10e ACLO_0875 PF00831 Ribosomal L29 protein ACLO_0876 PF00366 Ribosomal protein S17 ACLO_0877 PF00238 Ribosomal protein L14p/L23e ACLO_0878 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACLO_0878 PF00467 KOW motif ACLO_0879 PF00281 Ribosomal protein L5 ACLO_0879 PF00673 ribosomal L5P family C-terminus ACLO_0880 PF00253 Ribosomal protein S14p/S29e ACLO_0881 PF00410 Ribosomal protein S8 ACLO_0882 PF00347 Ribosomal protein L6 ACLO_0883 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACLO_0884 PF00333 Ribosomal protein S5, N-terminal domain ACLO_0884 PF03719 Ribosomal protein S5, C-terminal domain ACLO_0885 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACLO_0886 PF00344 SecY translocase ACLO_0887 PF00557 Metallopeptidase family M24 ACLO_0888 PF01176 Translation initiation factor 1A / IF-1 ACLO_0890 PF03167 Uracil DNA glycosylase superfamily ACLO_0892 PF01336 OB-fold nucleic acid binding domain ACLO_0892 PF00152 tRNA synthetases class II (D, K and N) ACLO_0892 PF02938 GAD domain ACLO_0895 PF08497 Radical SAM N-terminal ACLO_0895 PF04055 Radical SAM superfamily ACLO_0896 PF05191 Adenylate kinase, active site lid ACLO_0900 PF02653 Branched-chain amino acid transport system / permease component ACLO_0902 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACLO_0902 PF00005 ABC transporter ACLO_0903 PF00005 ABC transporter ACLO_0906 PF01774 UreD urease accessory protein ACLO_0907 PF00699 Urease beta subunit ACLO_0907 PF00547 Urease, gamma subunit ACLO_0908 PF00449 Urease alpha-subunit, N-terminal domain ACLO_0908 PF01979 Amidohydrolase family ACLO_0909 PF05194 UreE urease accessory protein, C-terminal domain ACLO_0911 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACLO_0912 PF00873 AcrB/AcrD/AcrF family ACLO_0913 PF00529 HlyD membrane-fusion protein of T1SS ACLO_0913 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACLO_0916 PF08448 PAS fold ACLO_0916 PF00990 Diguanylate cyclase, GGDEF domain ACLO_0917 PF03372 Endonuclease/Exonuclease/phosphatase family ACLO_0923 PF00342 Phosphoglucose isomerase ACLO_0924 PF00483 Nucleotidyl transferase ACLO_0925 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACLO_0925 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACLO_0925 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACLO_0925 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACLO_0932 PF06865 Pyrimidine/purine nucleoside phosphorylase ACLO_0936 PF01926 50S ribosome-binding GTPase ACLO_0936 PF06071 Protein of unknown function (DUF933) ACLO_0937 PF00860 Permease family ACLO_0938 PF00156 Phosphoribosyl transferase domain ACLO_0939 PF04241 Protein of unknown function (DUF423) ACLO_0942 PF00860 Permease family ACLO_0943 PF04461 Protein of unknown function (DUF520) ACLO_0945 PF00486 Transcriptional regulatory protein, C terminal ACLO_0945 PF00072 Response regulator receiver domain ACLO_0946 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_0947 PF00293 NUDIX domain ACLO_0949 PF02253 Phospholipase A1 ACLO_0950 PF00834 Ribulose-phosphate 3 epimerase family ACLO_0951 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ACLO_0952 PF02811 PHP domain ACLO_0952 PF14579 Helix-hairpin-helix motif ACLO_0952 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACLO_0952 PF11490 DNA polymerase III polC-type N-terminus II ACLO_0952 PF14480 DNA polymerase III polC-type N-terminus I ACLO_0952 PF00929 Exonuclease ACLO_0952 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACLO_0953 PF13291 ACT domain ACLO_0953 PF02824 TGS domain ACLO_0953 PF04607 Region found in RelA / SpoT proteins ACLO_0955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACLO_0956 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ACLO_0956 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ACLO_0956 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACLO_0958 PF05175 Methyltransferase small domain ACLO_0959 PF03692 Putative zinc- or iron-chelating domain ACLO_0961 PF00218 Indole-3-glycerol phosphate synthase ACLO_0962 PF03466 LysR substrate binding domain ACLO_0962 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACLO_0963 PF01361 Tautomerase enzyme ACLO_0965 PF01168 Alanine racemase, N-terminal domain ACLO_0966 PF02163 Peptidase family M50 ACLO_0966 PF17820 PDZ domain ACLO_0967 PF01066 CDP-alcohol phosphatidyltransferase ACLO_0969 PF00701 Dihydrodipicolinate synthetase family ACLO_0972 PF01180 Dihydroorotate dehydrogenase ACLO_0973 PF00005 ABC transporter ACLO_0973 PF00664 ABC transporter transmembrane region ACLO_0974 PF03023 Lipid II flippase MurJ ACLO_0976 PF02915 Rubrerythrin ACLO_0978 PF01699 Sodium/calcium exchanger protein ACLO_0979 PF02130 Uncharacterized protein family UPF0054 ACLO_0980 PF18073 Rubredoxin metal binding domain ACLO_0988 PF00448 SRP54-type protein, GTPase domain ACLO_0989 PF00578 AhpC/TSA family ACLO_0991 PF01966 HD domain ACLO_0991 PF00013 KH domain ACLO_0991 PF12072 Domain of unknown function (DUF3552) ACLO_0993 PF00528 Binding-protein-dependent transport system inner membrane component ACLO_0993 PF12911 N-terminal TM domain of oligopeptide transport permease C ACLO_0995 PF00106 short chain dehydrogenase ACLO_0998 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACLO_1000 PF00486 Transcriptional regulatory protein, C terminal ACLO_1000 PF00072 Response regulator receiver domain ACLO_1001 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1003 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACLO_1003 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACLO_1004 PF17151 Periplasmic sensor domain ACLO_1004 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1005 PF09424 Yqey-like protein ACLO_1008 PF02535 ZIP Zinc transporter ACLO_1009 PF01966 HD domain ACLO_1010 PF16916 Dimerisation domain of Zinc Transporter ACLO_1010 PF01545 Cation efflux family ACLO_1011 PF00155 Aminotransferase class I and II ACLO_1012 PF01863 Protein of unknown function DUF45 ACLO_1014 PF00890 FAD binding domain ACLO_1014 PF02910 Fumarate reductase flavoprotein C-term ACLO_1015 PF00958 GMP synthase C terminal domain ACLO_1015 PF02540 NAD synthase ACLO_1015 PF00117 Glutamine amidotransferase class-I ACLO_1017 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ACLO_1018 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ACLO_1020 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ACLO_1021 PF05099 Tellurite resistance protein TerB ACLO_1021 PF00226 DnaJ domain ACLO_1024 PF01042 Endoribonuclease L-PSP ACLO_1029 PF00561 alpha/beta hydrolase fold ACLO_1030 PF17746 SfsA N-terminal OB domain ACLO_1030 PF03749 Sugar fermentation stimulation protein RE domain ACLO_1033 PF03062 MBOAT, membrane-bound O-acyltransferase family ACLO_1034 PF00849 RNA pseudouridylate synthase ACLO_1035 PF03449 Transcription elongation factor, N-terminal ACLO_1035 PF01272 Transcription elongation factor, GreA/GreB, C-term ACLO_1036 PF17785 PUA-like domain ACLO_1036 PF10672 S-adenosylmethionine-dependent methyltransferase ACLO_1037 PF07690 Major Facilitator Superfamily ACLO_1040 PF17243 POTRA domain TamA domain 1 ACLO_1040 PF01103 Surface antigen ACLO_1040 PF07244 Surface antigen variable number repeat ACLO_1041 PF00106 short chain dehydrogenase ACLO_1042 PF00117 Glutamine amidotransferase class-I ACLO_1042 PF00958 GMP synthase C terminal domain ACLO_1042 PF02540 NAD synthase ACLO_1051 PF07669 Eco57I restriction-modification methylase ACLO_1053 PF03471 Transporter associated domain ACLO_1053 PF00571 CBS domain ACLO_1054 PF03734 L,D-transpeptidase catalytic domain ACLO_1054 PF01471 Putative peptidoglycan binding domain ACLO_1055 PF01594 AI-2E family transporter ACLO_1056 PF01966 HD domain ACLO_1059 PF03471 Transporter associated domain ACLO_1059 PF01595 Cyclin M transmembrane N-terminal domain ACLO_1059 PF00571 CBS domain ACLO_1062 PF17760 UvrA interaction domain ACLO_1062 PF17755 UvrA DNA-binding domain ACLO_1063 PF17932 Tetracyclin repressor-like, C-terminal domain ACLO_1063 PF00440 Bacterial regulatory proteins, tetR family ACLO_1066 PF00270 DEAD/DEAH box helicase ACLO_1066 PF00271 Helicase conserved C-terminal domain ACLO_1068 PF06426 Serine acetyltransferase, N-terminal ACLO_1068 PF00132 Bacterial transferase hexapeptide (six repeats) ACLO_1069 PF17944 Arginine decarboxylase C-terminal helical extension ACLO_1069 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACLO_1069 PF17810 Arginine decarboxylase helical bundle domain ACLO_1070 PF13393 Histidyl-tRNA synthetase ACLO_1070 PF03129 Anticodon binding domain ACLO_1071 PF02223 Thymidylate kinase ACLO_1072 PF01467 Cytidylyltransferase-like ACLO_1073 PF02441 Flavoprotein ACLO_1075 PF01281 Ribosomal protein L9, N-terminal domain ACLO_1075 PF03948 Ribosomal protein L9, C-terminal domain ACLO_1076 PF00227 Proteasome subunit ACLO_1077 PF10431 C-terminal, D2-small domain, of ClpB protein ACLO_1077 PF07724 AAA domain (Cdc48 subfamily) ACLO_1079 PF01026 TatD related DNase ACLO_1081 PF03330 Lytic transglycolase ACLO_1081 PF05036 Sporulation related domain ACLO_1082 PF00475 Imidazoleglycerol-phosphate dehydratase ACLO_1086 PF01926 50S ribosome-binding GTPase ACLO_1087 PF00583 Acetyltransferase (GNAT) family ACLO_1088 PF00155 Aminotransferase class I and II ACLO_1088 PF00392 Bacterial regulatory proteins, gntR family ACLO_1089 PF01243 Pyridoxamine 5'-phosphate oxidase ACLO_1091 PF00873 AcrB/AcrD/AcrF family ACLO_1092 PF00873 AcrB/AcrD/AcrF family ACLO_1093 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACLO_1095 PF00581 Rhodanese-like domain ACLO_1096 PF00989 PAS fold ACLO_1096 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1096 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1097 PF00813 FliP family ACLO_1098 PF05223 NTF2-like N-terminal transpeptidase domain ACLO_1098 PF03717 Penicillin-binding Protein dimerisation domain ACLO_1098 PF00905 Penicillin binding protein transpeptidase domain ACLO_1103 PF00732 GMC oxidoreductase ACLO_1103 PF05199 GMC oxidoreductase ACLO_1108 PF02491 SHS2 domain inserted in FTSA ACLO_1109 PF00091 Tubulin/FtsZ family, GTPase domain ACLO_1109 PF12327 FtsZ family, C-terminal domain ACLO_1112 PF01218 Coproporphyrinogen III oxidase ACLO_1114 PF00561 alpha/beta hydrolase fold ACLO_1115 PF02609 Exonuclease VII small subunit ACLO_1116 PF00488 MutS domain V ACLO_1116 PF01713 Smr domain ACLO_1120 PF01546 Peptidase family M20/M25/M40 ACLO_1120 PF07687 Peptidase dimerisation domain ACLO_1122 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ACLO_1125 PF00005 ABC transporter ACLO_1128 PF00800 Prephenate dehydratase ACLO_1128 PF01817 Chorismate mutase type II ACLO_1129 PF08274 PhnA Zinc-Ribbon ACLO_1129 PF03831 PhnA domain ACLO_1133 PF01161 Phosphatidylethanolamine-binding protein ACLO_1134 PF03466 LysR substrate binding domain ACLO_1134 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACLO_1135 PF03601 Conserved hypothetical protein 698 ACLO_1137 PF02203 Tar ligand binding domain homologue ACLO_1137 PF00672 HAMP domain ACLO_1137 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1140 PF01638 HxlR-like helix-turn-helix ACLO_1141 PF02525 Flavodoxin-like fold ACLO_1143 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACLO_1144 PF00881 Nitroreductase family ACLO_1146 PF00672 HAMP domain ACLO_1146 PF18698 Histidine kinase sensor domain ACLO_1146 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1146 PF00989 PAS fold ACLO_1146 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1149 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1149 PF08447 PAS fold ACLO_1149 PF08448 PAS fold ACLO_1150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1150 PF08447 PAS fold ACLO_1150 PF08448 PAS fold ACLO_1152 PF01627 Hpt domain ACLO_1152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1152 PF01584 CheW-like domain ACLO_1152 PF02895 Signal transducing histidine kinase, homodimeric domain ACLO_1152 PF09078 CheY binding ACLO_1153 PF00196 Bacterial regulatory proteins, luxR family ACLO_1153 PF00072 Response regulator receiver domain ACLO_1155 PF01593 Flavin containing amine oxidoreductase ACLO_1158 PF11849 Domain of unknown function (DUF3369) ACLO_1160 PF08212 Lipocalin-like domain ACLO_1163 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ACLO_1166 PF00563 EAL domain ACLO_1166 PF08495 FIST N domain ACLO_1166 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1166 PF10442 FIST C domain ACLO_1170 PF01593 Flavin containing amine oxidoreductase ACLO_1171 PF08212 Lipocalin-like domain ACLO_1173 PF00106 short chain dehydrogenase ACLO_1175 PF12848 ABC transporter ACLO_1175 PF00005 ABC transporter ACLO_1176 PF03061 Thioesterase superfamily ACLO_1177 PF11849 Domain of unknown function (DUF3369) ACLO_1178 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1178 PF02203 Tar ligand binding domain homologue ACLO_1178 PF00672 HAMP domain ACLO_1179 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1179 PF08447 PAS fold ACLO_1180 PF12826 Helix-hairpin-helix motif ACLO_1180 PF00533 BRCA1 C Terminus (BRCT) domain ACLO_1180 PF03120 NAD-dependent DNA ligase OB-fold domain ACLO_1180 PF01653 NAD-dependent DNA ligase adenylation domain ACLO_1184 PF01695 IstB-like ATP binding protein ACLO_1202 PF01906 Putative heavy-metal-binding ACLO_1203 PF00589 Phage integrase family ACLO_1203 PF02899 Phage integrase, N-terminal SAM-like domain ACLO_1212 PF09397 Ftsk gamma domain ACLO_1212 PF17854 FtsK alpha domain ACLO_1212 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ACLO_1212 PF01580 FtsK/SpoIIIE family ACLO_1213 PF07687 Peptidase dimerisation domain ACLO_1213 PF01546 Peptidase family M20/M25/M40 ACLO_1214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1214 PF08448 PAS fold ACLO_1214 PF08447 PAS fold ACLO_1215 PF00072 Response regulator receiver domain ACLO_1215 PF00486 Transcriptional regulatory protein, C terminal ACLO_1216 PF05140 ResB-like family ACLO_1216 PF01578 Cytochrome C assembly protein ACLO_1222 PF00589 Phage integrase family ACLO_1222 PF14659 Phage integrase, N-terminal SAM-like domain ACLO_1223 PF08003 Protein of unknown function (DUF1698) ACLO_1224 PF00563 EAL domain ACLO_1224 PF00360 Phytochrome region ACLO_1224 PF01590 GAF domain ACLO_1224 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1225 PF00563 EAL domain ACLO_1225 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1225 PF08447 PAS fold ACLO_1225 PF08448 PAS fold ACLO_1226 PF00753 Metallo-beta-lactamase superfamily ACLO_1230 PF00291 Pyridoxal-phosphate dependent enzyme ACLO_1231 PF00226 DnaJ domain ACLO_1231 PF01556 DnaJ C terminal domain ACLO_1231 PF00684 DnaJ central domain ACLO_1232 PF02132 RecR protein ACLO_1232 PF13662 Toprim domain ACLO_1234 PF08447 PAS fold ACLO_1234 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1234 PF08448 PAS fold ACLO_1236 PF00132 Bacterial transferase hexapeptide (six repeats) ACLO_1237 PF00764 Arginosuccinate synthase ACLO_1238 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1238 PF00072 Response regulator receiver domain ACLO_1239 PF07715 TonB-dependent Receptor Plug Domain ACLO_1239 PF00593 TonB dependent receptor ACLO_1241 PF02885 Glycosyl transferase family, helical bundle domain ACLO_1241 PF00591 Glycosyl transferase family, a/b domain ACLO_1242 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ACLO_1243 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACLO_1243 PF00005 ABC transporter ACLO_1244 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1244 PF08448 PAS fold ACLO_1245 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1245 PF10442 FIST C domain ACLO_1245 PF08495 FIST N domain ACLO_1245 PF00563 EAL domain ACLO_1246 PF02348 Cytidylyltransferase ACLO_1247 PF01367 5'-3' exonuclease, C-terminal SAM fold ACLO_1247 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACLO_1247 PF00476 DNA polymerase family A ACLO_1251 PF01790 Prolipoprotein diacylglyceryl transferase ACLO_1252 PF02754 Cysteine-rich domain ACLO_1252 PF02665 Nitrate reductase gamma subunit ACLO_1252 PF13183 4Fe-4S dicluster domain ACLO_1254 PF03737 Aldolase/RraA ACLO_1260 PF02547 Queuosine biosynthesis protein ACLO_1261 PF00902 Sec-independent protein translocase protein (TatC) ACLO_1262 PF02416 mttA/Hcf106 family ACLO_1263 PF00226 DnaJ domain ACLO_1263 PF05099 Tellurite resistance protein TerB ACLO_1267 PF02540 NAD synthase ACLO_1268 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACLO_1269 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ACLO_1271 PF04055 Radical SAM superfamily ACLO_1271 PF06969 HemN C-terminal domain ACLO_1272 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACLO_1272 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACLO_1273 PF00317 Ribonucleotide reductase, all-alpha domain ACLO_1273 PF02867 Ribonucleotide reductase, barrel domain ACLO_1273 PF03477 ATP cone domain ACLO_1276 PF00486 Transcriptional regulatory protein, C terminal ACLO_1276 PF00072 Response regulator receiver domain ACLO_1277 PF08447 PAS fold ACLO_1277 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1278 PF00490 Delta-aminolevulinic acid dehydratase ACLO_1279 PF00925 GTP cyclohydrolase II ACLO_1280 PF02527 rRNA small subunit methyltransferase G ACLO_1284 PF02092 Glycyl-tRNA synthetase beta subunit ACLO_1286 PF00486 Transcriptional regulatory protein, C terminal ACLO_1286 PF00072 Response regulator receiver domain ACLO_1288 PF16200 C-terminal region of band_7 ACLO_1288 PF01145 SPFH domain / Band 7 family ACLO_1296 PF01618 MotA/TolQ/ExbB proton channel family ACLO_1297 PF02472 Biopolymer transport protein ExbD/TolR ACLO_1300 PF13476 AAA domain ACLO_1302 PF01695 IstB-like ATP binding protein ACLO_1309 PF03737 Aldolase/RraA ACLO_1310 PF05971 RNA methyltransferase ACLO_1311 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACLO_1312 PF00849 RNA pseudouridylate synthase ACLO_1312 PF01479 S4 domain ACLO_1314 PF13419 Haloacid dehalogenase-like hydrolase ACLO_1319 PF07715 TonB-dependent Receptor Plug Domain ACLO_1319 PF00593 TonB dependent receptor ACLO_1320 PF01497 Periplasmic binding protein ACLO_1321 PF00005 ABC transporter ACLO_1322 PF01032 FecCD transport family ACLO_1327 PF00248 Aldo/keto reductase family ACLO_1328 PF08501 Shikimate dehydrogenase substrate binding domain ACLO_1329 PF08241 Methyltransferase domain ACLO_1331 PF00390 Malic enzyme, N-terminal domain ACLO_1331 PF03949 Malic enzyme, NAD binding domain ACLO_1331 PF01515 Phosphate acetyl/butaryl transferase ACLO_1332 PF00551 Formyl transferase ACLO_1332 PF01842 ACT domain ACLO_1333 PF00588 SpoU rRNA Methylase family ACLO_1337 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACLO_1337 PF00925 GTP cyclohydrolase II ACLO_1339 PF01293 Phosphoenolpyruvate carboxykinase ACLO_1340 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit ACLO_1341 PF08502 LeuA allosteric (dimerisation) domain ACLO_1341 PF00682 HMGL-like ACLO_1345 PF01588 Putative tRNA binding domain ACLO_1345 PF09334 tRNA synthetases class I (M) ACLO_1345 PF00133 tRNA synthetases class I (I, L, M and V) ACLO_1347 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ACLO_1352 PF02325 YGGT family ACLO_1353 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACLO_1354 PF05193 Peptidase M16 inactive domain ACLO_1355 PF04055 Radical SAM superfamily ACLO_1356 PF01103 Surface antigen ACLO_1356 PF07244 Surface antigen variable number repeat ACLO_1357 PF02153 Prephenate dehydrogenase ACLO_1357 PF01842 ACT domain ACLO_1358 PF00809 Pterin binding enzyme ACLO_1361 PF01842 ACT domain ACLO_1361 PF00696 Amino acid kinase family ACLO_1361 PF13840 ACT domain ACLO_1362 PF00293 NUDIX domain ACLO_1363 PF06969 HemN C-terminal domain ACLO_1363 PF04055 Radical SAM superfamily ACLO_1364 PF05175 Methyltransferase small domain ACLO_1364 PF17827 PrmC N-terminal domain ACLO_1365 PF01432 Peptidase family M3 ACLO_1369 PF03459 TOBE domain ACLO_1369 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACLO_1372 PF00528 Binding-protein-dependent transport system inner membrane component ACLO_1373 PF08402 TOBE domain ACLO_1373 PF00005 ABC transporter ACLO_1374 PF18644 Phage integrase SAM-like domain ACLO_1374 PF00589 Phage integrase family ACLO_1375 PF00072 Response regulator receiver domain ACLO_1375 PF01339 CheB methylesterase ACLO_1376 PF03975 CheD chemotactic sensory transduction ACLO_1377 PF01739 CheR methyltransferase, SAM binding domain ACLO_1377 PF03705 CheR methyltransferase, all-alpha domain ACLO_1378 PF01627 Hpt domain ACLO_1378 PF02895 Signal transducing histidine kinase, homodimeric domain ACLO_1378 PF01584 CheW-like domain ACLO_1378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1378 PF09078 CheY binding ACLO_1379 PF00072 Response regulator receiver domain ACLO_1380 PF00013 KH domain ACLO_1380 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACLO_1380 PF03725 3' exoribonuclease family, domain 2 ACLO_1380 PF01138 3' exoribonuclease family, domain 1 ACLO_1380 PF00575 S1 RNA binding domain ACLO_1382 PF04453 LPS transport system D ACLO_1382 PF03968 OstA-like protein ACLO_1384 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ACLO_1384 PF02843 Phosphoribosylglycinamide synthetase, C domain ACLO_1384 PF02844 Phosphoribosylglycinamide synthetase, N domain ACLO_1386 PF01740 STAS domain ACLO_1386 PF00916 Sulfate permease family ACLO_1387 PF01926 50S ribosome-binding GTPase ACLO_1387 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACLO_1388 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ACLO_1388 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ACLO_1389 PF01580 FtsK/SpoIIIE family ACLO_1389 PF17854 FtsK alpha domain ACLO_1389 PF09397 Ftsk gamma domain ACLO_1390 PF00132 Bacterial transferase hexapeptide (six repeats) ACLO_1390 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ACLO_1391 PF10369 Small subunit of acetolactate synthase ACLO_1392 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACLO_1392 PF00205 Thiamine pyrophosphate enzyme, central domain ACLO_1392 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACLO_1393 PF00563 EAL domain ACLO_1393 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1393 PF03707 Bacterial signalling protein N terminal repeat ACLO_1396 PF02541 Ppx/GppA phosphatase family ACLO_1398 PF01590 GAF domain ACLO_1398 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1398 PF00360 Phytochrome region ACLO_1398 PF00563 EAL domain ACLO_1401 PF00085 Thioredoxin ACLO_1403 PF01171 PP-loop family ACLO_1405 PF03453 MoeA N-terminal region (domain I and II) ACLO_1405 PF00994 Probable molybdopterin binding domain ACLO_1405 PF03454 MoeA C-terminal region (domain IV) ACLO_1408 PF02646 RmuC family ACLO_1409 PF16491 CAAX prenyl protease N-terminal, five membrane helices ACLO_1409 PF01435 Peptidase family M48 ACLO_1411 PF03061 Thioesterase superfamily ACLO_1413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1413 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1414 PF11849 Domain of unknown function (DUF3369) ACLO_1415 PF08447 PAS fold ACLO_1415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1416 PF02203 Tar ligand binding domain homologue ACLO_1416 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1416 PF00672 HAMP domain ACLO_1417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1417 PF08447 PAS fold ACLO_1417 PF08448 PAS fold ACLO_1418 PF00486 Transcriptional regulatory protein, C terminal ACLO_1418 PF00072 Response regulator receiver domain ACLO_1419 PF00072 Response regulator receiver domain ACLO_1420 PF00672 HAMP domain ACLO_1420 PF01627 Hpt domain ACLO_1420 PF00072 Response regulator receiver domain ACLO_1420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACLO_1420 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1421 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1421 PF00672 HAMP domain ACLO_1421 PF02203 Tar ligand binding domain homologue ACLO_1424 PF02417 Chromate transporter ACLO_1425 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACLO_1427 PF02040 Arsenical pump membrane protein ACLO_1428 PF01022 Bacterial regulatory protein, arsR family ACLO_1430 PF03738 Glutathionylspermidine synthase preATP-grasp ACLO_1431 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACLO_1431 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1431 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1432 PF13407 Periplasmic binding protein domain ACLO_1433 PF01966 HD domain ACLO_1436 PF07516 SecA Wing and Scaffold domain ACLO_1436 PF07517 SecA DEAD-like domain ACLO_1436 PF01043 SecA preprotein cross-linking domain ACLO_1436 PF02810 SEC-C motif ACLO_1436 PF00271 Helicase conserved C-terminal domain ACLO_1437 PF12704 MacB-like periplasmic core domain ACLO_1437 PF02687 FtsX-like permease family ACLO_1440 PF03971 Monomeric isocitrate dehydrogenase ACLO_1441 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACLO_1441 PF00056 lactate/malate dehydrogenase, NAD binding domain ACLO_1443 PF02310 B12 binding domain ACLO_1444 PF06368 Methylaspartate mutase E chain (MutE) ACLO_1445 PF13941 MutL protein ACLO_1446 PF13193 AMP-binding enzyme C-terminal domain ACLO_1446 PF00501 AMP-binding enzyme ACLO_1452 PF00149 Calcineurin-like phosphoesterase ACLO_1454 PF00873 AcrB/AcrD/AcrF family ACLO_1456 PF01795 MraW methylase family ACLO_1458 PF00216 Bacterial DNA-binding protein ACLO_1461 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ACLO_1461 PF01266 FAD dependent oxidoreductase ACLO_1463 PF00072 Response regulator receiver domain ACLO_1465 PF08448 PAS fold ACLO_1465 PF08447 PAS fold ACLO_1465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1466 PF01556 DnaJ C terminal domain ACLO_1466 PF00226 DnaJ domain ACLO_1467 PF13411 MerR HTH family regulatory protein ACLO_1468 PF02899 Phage integrase, N-terminal SAM-like domain ACLO_1468 PF00589 Phage integrase family ACLO_1483 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACLO_1483 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACLO_1483 PF02142 MGS-like domain ACLO_1484 PF01810 LysE type translocator ACLO_1485 PF00899 ThiF family ACLO_1486 PF00563 EAL domain ACLO_1486 PF12792 CSS motif domain associated with EAL ACLO_1487 PF01522 Polysaccharide deacetylase ACLO_1488 PF00939 Sodium:sulfate symporter transmembrane region ACLO_1489 PF00994 Probable molybdopterin binding domain ACLO_1491 PF01434 Peptidase family M41 ACLO_1491 PF17862 AAA+ lid domain ACLO_1491 PF00004 ATPase family associated with various cellular activities (AAA) ACLO_1492 PF00919 Uncharacterized protein family UPF0004 ACLO_1492 PF04055 Radical SAM superfamily ACLO_1494 PF01761 3-dehydroquinate synthase ACLO_1496 PF00762 Ferrochelatase ACLO_1499 PF12282 Signal transduction histidine kinase ACLO_1499 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1499 PF07568 Histidine kinase ACLO_1502 PF00072 Response regulator receiver domain ACLO_1502 PF04397 LytTr DNA-binding domain ACLO_1503 PF07694 5TMR of 5TMR-LYT ACLO_1503 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1503 PF06580 Histidine kinase ACLO_1504 PF01850 PIN domain ACLO_1511 PF00700 Bacterial flagellin C-terminal helical region ACLO_1511 PF07196 Flagellin hook IN motif ACLO_1511 PF00669 Bacterial flagellin N-terminal helical region ACLO_1511 PF00669 Bacterial flagellin N-terminal helical region ACLO_1511 PF00700 Bacterial flagellin C-terminal helical region ACLO_1511 PF07196 Flagellin hook IN motif ACLO_1514 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1515 PF00072 Response regulator receiver domain ACLO_1515 PF00486 Transcriptional regulatory protein, C terminal ACLO_1519 PF00005 ABC transporter ACLO_1519 PF00664 ABC transporter transmembrane region ACLO_1520 PF01594 AI-2E family transporter ACLO_1522 PF00563 EAL domain ACLO_1522 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1522 PF03707 Bacterial signalling protein N terminal repeat ACLO_1523 PF00085 Thioredoxin ACLO_1524 PF00578 AhpC/TSA family ACLO_1524 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACLO_1525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1525 PF01627 Hpt domain ACLO_1525 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1525 PF00672 HAMP domain ACLO_1525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACLO_1525 PF00072 Response regulator receiver domain ACLO_1527 PF00933 Glycosyl hydrolase family 3 N terminal domain ACLO_1527 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACLO_1531 PF00072 Response regulator receiver domain ACLO_1531 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1532 PF02652 L-lactate permease ACLO_1533 PF00226 DnaJ domain ACLO_1533 PF01556 DnaJ C terminal domain ACLO_1533 PF00684 DnaJ central domain ACLO_1539 PF00158 Sigma-54 interaction domain ACLO_1539 PF00072 Response regulator receiver domain ACLO_1540 PF00072 Response regulator receiver domain ACLO_1540 PF01627 Hpt domain ACLO_1540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1540 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1540 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACLO_1542 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACLO_1543 PF00478 IMP dehydrogenase / GMP reductase domain ACLO_1543 PF00571 CBS domain ACLO_1544 PF01425 Amidase ACLO_1545 PF01196 Ribosomal protein L17 ACLO_1546 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACLO_1546 PF01000 RNA polymerase Rpb3/RpoA insert domain ACLO_1546 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACLO_1547 PF00163 Ribosomal protein S4/S9 N-terminal domain ACLO_1547 PF01479 S4 domain ACLO_1548 PF00411 Ribosomal protein S11 ACLO_1549 PF00416 Ribosomal protein S13/S18 ACLO_1550 PF00444 Ribosomal protein L36 ACLO_1553 PF00180 Isocitrate/isopropylmalate dehydrogenase ACLO_1554 PF00694 Aconitase C-terminal domain ACLO_1555 PF00140 Sigma-70 factor, region 1.2 ACLO_1555 PF04542 Sigma-70 region 2 ACLO_1555 PF04539 Sigma-70 region 3 ACLO_1555 PF04545 Sigma-70, region 4 ACLO_1559 PF06865 Pyrimidine/purine nucleoside phosphorylase ACLO_1560 PF00202 Aminotransferase class-III ACLO_1565 PF01098 Cell cycle protein ACLO_1566 PF01479 S4 domain ACLO_1566 PF00849 RNA pseudouridylate synthase ACLO_1567 PF02903 Alpha amylase, N-terminal ig-like domain ACLO_1567 PF00128 Alpha amylase, catalytic domain ACLO_1568 PF02390 Putative methyltransferase ACLO_1569 PF00005 ABC transporter ACLO_1572 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ACLO_1574 PF00005 ABC transporter ACLO_1574 PF16326 ABC transporter C-terminal domain ACLO_1574 PF12848 ABC transporter ACLO_1577 PF00176 SNF2 family N-terminal domain ACLO_1577 PF00271 Helicase conserved C-terminal domain ACLO_1580 PF14602 Hexapeptide repeat of succinyl-transferase ACLO_1580 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ACLO_1581 PF18074 Primosomal protein N C-terminal domain ACLO_1581 PF00271 Helicase conserved C-terminal domain ACLO_1581 PF00270 DEAD/DEAH box helicase ACLO_1581 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACLO_1586 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ACLO_1587 PF00586 AIR synthase related protein, N-terminal domain ACLO_1587 PF02769 AIR synthase related protein, C-terminal domain ACLO_1591 PF01924 Hydrogenase formation hypA family ACLO_1592 PF01455 HupF/HypC family ACLO_1593 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACLO_1594 PF00005 ABC transporter ACLO_1597 PF01891 Cobalt uptake substrate-specific transmembrane region ACLO_1599 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1599 PF00672 HAMP domain ACLO_1599 PF02203 Tar ligand binding domain homologue ACLO_1604 PF12823 Domain of unknown function (DUF3817) ACLO_1606 PF02926 THUMP domain ACLO_1606 PF02568 Thiamine biosynthesis protein (ThiI) ACLO_1611 PF00999 Sodium/hydrogen exchanger family ACLO_1611 PF03471 Transporter associated domain ACLO_1611 PF02080 TrkA-C domain ACLO_1613 PF07556 Protein of unknown function (DUF1538) ACLO_1614 PF00571 CBS domain ACLO_1618 PF00708 Acylphosphatase ACLO_1618 PF17788 HypF Kae1-like domain ACLO_1618 PF01300 Telomere recombination ACLO_1618 PF07503 HypF finger ACLO_1620 PF01750 Hydrogenase maturation protease ACLO_1621 PF01292 Prokaryotic cytochrome b561 ACLO_1622 PF00374 Nickel-dependent hydrogenase ACLO_1623 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ACLO_1623 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACLO_1623 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACLO_1624 PF00374 Nickel-dependent hydrogenase ACLO_1625 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACLO_1625 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ACLO_1627 PF00330 Aconitase family (aconitate hydratase) ACLO_1627 PF11791 Aconitate B N-terminal domain ACLO_1627 PF06434 Aconitate hydratase 2 N-terminus ACLO_1628 PF00563 EAL domain ACLO_1628 PF00360 Phytochrome region ACLO_1628 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1628 PF01590 GAF domain ACLO_1632 PF00501 AMP-binding enzyme ACLO_1633 PF00108 Thiolase, N-terminal domain ACLO_1633 PF02803 Thiolase, C-terminal domain ACLO_1634 PF00378 Enoyl-CoA hydratase/isomerase ACLO_1634 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACLO_1634 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ACLO_1635 PF02770 Acyl-CoA dehydrogenase, middle domain ACLO_1635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACLO_1635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACLO_1635 PF09317 Domain of unknown function (DUF1974) ACLO_1643 PF01695 IstB-like ATP binding protein ACLO_1645 PF00563 EAL domain ACLO_1645 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1645 PF03707 Bacterial signalling protein N terminal repeat ACLO_1649 PF01709 Transcriptional regulator ACLO_1650 PF01551 Peptidase family M23 ACLO_1651 PF04333 MlaA lipoprotein ACLO_1654 PF03641 Possible lysine decarboxylase ACLO_1655 PF13419 Haloacid dehalogenase-like hydrolase ACLO_1660 PF02600 Disulfide bond formation protein DsbB ACLO_1664 PF02028 BCCT, betaine/carnitine/choline family transporter ACLO_1665 PF07690 Major Facilitator Superfamily ACLO_1669 PF00464 Serine hydroxymethyltransferase ACLO_1670 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACLO_1670 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACLO_1670 PF12833 Helix-turn-helix domain ACLO_1670 PF02805 Metal binding domain of Ada ACLO_1672 PF03062 MBOAT, membrane-bound O-acyltransferase family ACLO_1674 PF01263 Aldose 1-epimerase ACLO_1675 PF00905 Penicillin binding protein transpeptidase domain ACLO_1676 PF00270 DEAD/DEAH box helicase ACLO_1676 PF00271 Helicase conserved C-terminal domain ACLO_1677 PF18381 YcaO cyclodehydratase C-terminal domain ACLO_1677 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ACLO_1681 PF00672 HAMP domain ACLO_1681 PF02203 Tar ligand binding domain homologue ACLO_1681 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1682 PF00075 RNase H ACLO_1683 PF00682 HMGL-like ACLO_1683 PF07836 DmpG-like communication domain ACLO_1686 PF11798 IMS family HHH motif ACLO_1686 PF00817 impB/mucB/samB family ACLO_1686 PF11799 impB/mucB/samB family C-terminal domain ACLO_1688 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ACLO_1688 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACLO_1688 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACLO_1691 PF00005 ABC transporter ACLO_1692 PF00528 Binding-protein-dependent transport system inner membrane component ACLO_1693 PF12849 PBP superfamily domain ACLO_1694 PF03454 MoeA C-terminal region (domain IV) ACLO_1694 PF00994 Probable molybdopterin binding domain ACLO_1694 PF03453 MoeA N-terminal region (domain I and II) ACLO_1696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACLO_1696 PF03459 TOBE domain ACLO_1698 PF02634 FdhD/NarQ family ACLO_1700 PF13247 4Fe-4S dicluster domain ACLO_1706 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1706 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1707 PF00158 Sigma-54 interaction domain ACLO_1707 PF00072 Response regulator receiver domain ACLO_1707 PF02954 Bacterial regulatory protein, Fis family ACLO_1710 PF01022 Bacterial regulatory protein, arsR family ACLO_1715 PF17863 AAA lid domain ACLO_1715 PF07726 ATPase family associated with various cellular activities (AAA) ACLO_1716 PF01882 Protein of unknown function DUF58 ACLO_1719 PF13519 von Willebrand factor type A domain ACLO_1723 PF01841 Transglutaminase-like superfamily ACLO_1726 PF03841 L-seryl-tRNA selenium transferase ACLO_1727 PF09107 Elongation factor SelB, winged helix ACLO_1727 PF00009 Elongation factor Tu GTP binding domain ACLO_1727 PF09105 Elongation factor SelB, winged helix ACLO_1727 PF09106 Elongation factor SelB, winged helix ACLO_1727 PF03144 Elongation factor Tu domain 2 ACLO_1728 PF00580 UvrD/REP helicase N-terminal domain ACLO_1728 PF13361 UvrD-like helicase C-terminal domain ACLO_1732 PF00158 Sigma-54 interaction domain ACLO_1732 PF00072 Response regulator receiver domain ACLO_1733 PF00072 Response regulator receiver domain ACLO_1734 PF00672 HAMP domain ACLO_1734 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1734 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACLO_1734 PF00072 Response regulator receiver domain ACLO_1734 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1734 PF01627 Hpt domain ACLO_1735 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1735 PF00072 Response regulator receiver domain ACLO_1735 PF01627 Hpt domain ACLO_1735 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACLO_1735 PF00672 HAMP domain ACLO_1735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1736 PF00072 Response regulator receiver domain ACLO_1737 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1737 PF01627 Hpt domain ACLO_1737 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACLO_1737 PF00072 Response regulator receiver domain ACLO_1737 PF00672 HAMP domain ACLO_1737 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1744 PF08448 PAS fold ACLO_1744 PF00563 EAL domain ACLO_1744 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1748 PF01502 Phosphoribosyl-AMP cyclohydrolase ACLO_1749 PF04909 Amidohydrolase ACLO_1750 PF01242 6-pyruvoyl tetrahydropterin synthase ACLO_1752 PF01966 HD domain ACLO_1753 PF01243 Pyridoxamine 5'-phosphate oxidase ACLO_1753 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ACLO_1755 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1755 PF00563 EAL domain ACLO_1755 PF03707 Bacterial signalling protein N terminal repeat ACLO_1756 PF00271 Helicase conserved C-terminal domain ACLO_1756 PF00270 DEAD/DEAH box helicase ACLO_1756 PF03880 DbpA RNA binding domain ACLO_1759 PF00563 EAL domain ACLO_1761 PF02626 Carboxyltransferase domain, subdomain A and B ACLO_1763 PF03746 LamB/YcsF family ACLO_1768 PF00005 ABC transporter ACLO_1769 PF13533 Biotin-lipoyl like ACLO_1771 PF01384 Phosphate transporter family ACLO_1774 PF00183 Hsp90 protein ACLO_1775 PF00230 Major intrinsic protein ACLO_1776 PF00141 Peroxidase ACLO_1778 PF00072 Response regulator receiver domain ACLO_1778 PF00672 HAMP domain ACLO_1778 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1778 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1778 PF01627 Hpt domain ACLO_1778 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACLO_1779 PF00072 Response regulator receiver domain ACLO_1782 PF04403 Paraquat-inducible protein A ACLO_1785 PF00563 EAL domain ACLO_1785 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1785 PF08448 PAS fold ACLO_1787 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1787 PF13493 Domain of unknown function (DUF4118) ACLO_1787 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1787 PF02702 Osmosensitive K+ channel His kinase sensor domain ACLO_1788 PF00486 Transcriptional regulatory protein, C terminal ACLO_1788 PF00072 Response regulator receiver domain ACLO_1789 PF02386 Cation transport protein ACLO_1790 PF02080 TrkA-C domain ACLO_1790 PF02254 TrkA-N domain ACLO_1793 PF05088 Bacterial NAD-glutamate dehydrogenase ACLO_1794 PF04073 Aminoacyl-tRNA editing domain ACLO_1795 PF08713 DNA alkylation repair enzyme ACLO_1797 PF00491 Arginase family ACLO_1798 PF00682 HMGL-like ACLO_1798 PF08502 LeuA allosteric (dimerisation) domain ACLO_1799 PF12833 Helix-turn-helix domain ACLO_1800 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACLO_1800 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACLO_1801 PF01368 DHH family ACLO_1801 PF02833 DHHA2 domain ACLO_1803 PF10415 Fumarase C C-terminus ACLO_1803 PF00206 Lyase ACLO_1804 PF00072 Response regulator receiver domain ACLO_1804 PF00486 Transcriptional regulatory protein, C terminal ACLO_1805 PF02743 Cache domain ACLO_1805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1805 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1806 PF01235 Sodium:alanine symporter family ACLO_1807 PF01048 Phosphorylase superfamily ACLO_1808 PF00698 Acyl transferase domain ACLO_1809 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACLO_1811 PF01389 OmpA-like transmembrane domain ACLO_1811 PF00691 OmpA family ACLO_1812 PF00210 Ferritin-like domain ACLO_1813 PF04052 TolB amino-terminal domain ACLO_1815 PF02472 Biopolymer transport protein ExbD/TolR ACLO_1816 PF01618 MotA/TolQ/ExbB proton channel family ACLO_1817 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACLO_1818 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACLO_1818 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACLO_1819 PF00231 ATP synthase ACLO_1820 PF00306 ATP synthase alpha/beta chain, C terminal domain ACLO_1820 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACLO_1820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACLO_1821 PF00213 ATP synthase delta (OSCP) subunit ACLO_1822 PF00430 ATP synthase B/B' CF(0) ACLO_1824 PF02195 ParB-like nuclease domain ACLO_1824 PF17762 HTH domain found in ParB protein ACLO_1825 PF13614 AAA domain ACLO_1826 PF03099 Biotin/lipoate A/B protein ligase family ACLO_1826 PF02237 Biotin protein ligase C terminal domain ACLO_1826 PF08279 HTH domain ACLO_1828 PF00551 Formyl transferase ACLO_1828 PF02911 Formyl transferase, C-terminal domain ACLO_1829 PF00696 Amino acid kinase family ACLO_1830 PF01018 GTP1/OBG ACLO_1830 PF01926 50S ribosome-binding GTPase ACLO_1831 PF01016 Ribosomal L27 protein ACLO_1832 PF00829 Ribosomal prokaryotic L21 protein ACLO_1833 PF01042 Endoribonuclease L-PSP ACLO_1834 PF16730 DnaG-primase C-terminal, helicase-binding domain ACLO_1834 PF13662 Toprim domain ACLO_1834 PF08275 DNA primase catalytic core, N-terminal domain ACLO_1834 PF01807 CHC2 zinc finger ACLO_1836 PF14622 Ribonuclease-III-like ACLO_1836 PF00035 Double-stranded RNA binding motif ACLO_1837 PF01264 Chorismate synthase ACLO_1839 PF01435 Peptidase family M48 ACLO_1840 PF00300 Histidine phosphatase superfamily (branch 1) ACLO_1842 PF12631 MnmE helical domain ACLO_1842 PF01926 50S ribosome-binding GTPase ACLO_1842 PF10396 GTP-binding protein TrmE N-terminus ACLO_1844 PF14849 YidC periplasmic domain ACLO_1844 PF02096 60Kd inner membrane protein ACLO_1845 PF01809 Putative membrane protein insertion efficiency factor ACLO_1846 PF00825 Ribonuclease P ACLO_1847 PF00468 Ribosomal protein L34 ACLO_1848 PF10431 C-terminal, D2-small domain, of ClpB protein ACLO_1848 PF00004 ATPase family associated with various cellular activities (AAA) ACLO_1848 PF02861 Clp amino terminal domain, pathogenicity island component ACLO_1848 PF07724 AAA domain (Cdc48 subfamily) ACLO_1848 PF17871 AAA lid domain ACLO_1849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1849 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1851 PF01351 Ribonuclease HII ACLO_1854 PF01625 Peptide methionine sulfoxide reductase ACLO_1855 PF01641 SelR domain ACLO_1856 PF01557 Fumarylacetoacetate (FAA) hydrolase family ACLO_1858 PF00293 NUDIX domain ACLO_1858 PF13344 Haloacid dehalogenase-like hydrolase ACLO_1860 PF00512 His Kinase A (phospho-acceptor) domain ACLO_1860 PF09308 LuxQ, periplasmic ACLO_1860 PF00072 Response regulator receiver domain ACLO_1860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1861 PF00072 Response regulator receiver domain ACLO_1862 PF00072 Response regulator receiver domain ACLO_1862 PF00486 Transcriptional regulatory protein, C terminal ACLO_1864 PF02416 mttA/Hcf106 family ACLO_1866 PF02355 Protein export membrane protein ACLO_1867 PF02355 Protein export membrane protein ACLO_1867 PF07549 SecD/SecF GG Motif ACLO_1868 PF03741 Integral membrane protein TerC family ACLO_1869 PF01522 Polysaccharide deacetylase ACLO_1870 PF00672 HAMP domain ACLO_1870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1870 PF02203 Tar ligand binding domain homologue ACLO_1871 PF02203 Tar ligand binding domain homologue ACLO_1871 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1871 PF00672 HAMP domain ACLO_1872 PF00672 HAMP domain ACLO_1872 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1872 PF02203 Tar ligand binding domain homologue ACLO_1873 PF00255 Glutathione peroxidase ACLO_1874 PF04973 Nicotinamide mononucleotide transporter ACLO_1876 PF00990 Diguanylate cyclase, GGDEF domain ACLO_1876 PF17158 Membrane-associated sensor, integral membrane domain ACLO_1877 PF08459 UvrC Helix-hairpin-helix N-terminal ACLO_1877 PF02151 UvrB/uvrC motif ACLO_1877 PF01541 GIY-YIG catalytic domain ACLO_1878 PF00842 Alanine racemase, C-terminal domain ACLO_1878 PF01168 Alanine racemase, N-terminal domain ACLO_1881 PF00202 Aminotransferase class-III ACLO_1882 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1882 PF08447 PAS fold ACLO_1882 PF08448 PAS fold ACLO_1883 PF02142 MGS-like domain ACLO_1883 PF01808 AICARFT/IMPCHase bienzyme ACLO_1884 PF02769 AIR synthase related protein, C-terminal domain ACLO_1884 PF00586 AIR synthase related protein, N-terminal domain ACLO_1884 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ACLO_1886 PF01551 Peptidase family M23 ACLO_1886 PF08525 Opacity-associated protein A N-terminal motif ACLO_1886 PF01476 LysM domain ACLO_1888 PF00583 Acetyltransferase (GNAT) family ACLO_1889 PF00202 Aminotransferase class-III ACLO_1890 PF06339 Ectoine synthase ACLO_1891 PF05721 Phytanoyl-CoA dioxygenase (PhyH) ACLO_1892 PF13840 ACT domain ACLO_1892 PF00696 Amino acid kinase family ACLO_1893 PF01227 GTP cyclohydrolase I ACLO_1894 PF01544 CorA-like Mg2+ transporter protein ACLO_1895 PF00482 Type II secretion system (T2SS), protein F ACLO_1896 PF00437 Type II/IV secretion system protein ACLO_1899 PF07650 KH domain ACLO_1899 PF01926 50S ribosome-binding GTPase ACLO_1900 PF13335 Magnesium chelatase, subunit ChlI C-terminal ACLO_1900 PF01078 Magnesium chelatase, subunit ChlI ACLO_1902 PF01327 Polypeptide deformylase ACLO_1903 PF00574 Clp protease ACLO_1904 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACLO_1904 PF05697 Bacterial trigger factor protein (TF) ACLO_1904 PF05698 Bacterial trigger factor protein (TF) C-terminus ACLO_1905 PF13519 von Willebrand factor type A domain ACLO_1906 PF03976 Polyphosphate kinase 2 (PPK2) ACLO_1907 PF03976 Polyphosphate kinase 2 (PPK2) ACLO_1908 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACLO_1909 PF00301 Rubredoxin ACLO_1910 PF16653 Saccharopine dehydrogenase C-terminal domain ACLO_1910 PF03435 Saccharopine dehydrogenase NADP binding domain ACLO_1912 PF00589 Phage integrase family ACLO_1912 PF14659 Phage integrase, N-terminal SAM-like domain ACLO_1912 PF13356 Arm DNA-binding domain ACLO_1913 PF02810 SEC-C motif ACLO_1913 PF07517 SecA DEAD-like domain ACLO_1913 PF07516 SecA Wing and Scaffold domain ACLO_1913 PF01043 SecA preprotein cross-linking domain ACLO_1927 PF01695 IstB-like ATP binding protein ACLO_1948 PF07152 YaeQ protein ACLO_1952 PF01053 Cys/Met metabolism PLP-dependent enzyme ACLO_1953 PF01053 Cys/Met metabolism PLP-dependent enzyme ACLO_1956 PF00072 Response regulator receiver domain ACLO_1956 PF00486 Transcriptional regulatory protein, C terminal ACLO_1957 PF00583 Acetyltransferase (GNAT) family ACLO_1959 PF03824 High-affinity nickel-transport protein ACLO_1962 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACLO_1962 PF13244 Domain of unknown function (DUF4040) ACLO_1962 PF00361 Proton-conducting membrane transporter ACLO_1962 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ACLO_1963 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACLO_1964 PF00361 Proton-conducting membrane transporter ACLO_1965 PF01899 Na+/H+ ion antiporter subunit ACLO_1966 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ACLO_1969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_1969 PF08448 PAS fold ACLO_1969 PF08447 PAS fold ACLO_1970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACLO_1971 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1971 PF00672 HAMP domain ACLO_1971 PF02203 Tar ligand binding domain homologue ACLO_1972 PF12792 CSS motif domain associated with EAL ACLO_1972 PF00563 EAL domain ACLO_1973 PF00005 ABC transporter ACLO_1974 PF00528 Binding-protein-dependent transport system inner membrane component ACLO_1975 PF00005 ABC transporter ACLO_1976 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACLO_1976 PF01568 Molydopterin dinucleotide binding domain ACLO_1976 PF00384 Molybdopterin oxidoreductase ACLO_1976 PF04324 BFD-like [2Fe-2S] binding domain ACLO_1977 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACLO_1977 PF04324 BFD-like [2Fe-2S] binding domain ACLO_1977 PF18267 Rubredoxin NAD+ reductase C-terminal domain ACLO_1977 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACLO_1977 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACLO_1980 PF03150 Di-haem cytochrome c peroxidase ACLO_1981 PF04116 Fatty acid hydroxylase superfamily ACLO_1987 PF00137 ATP synthase subunit C ACLO_1988 PF00672 HAMP domain ACLO_1988 PF02743 Cache domain ACLO_1988 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_1990 PF12327 FtsZ family, C-terminal domain ACLO_1990 PF00091 Tubulin/FtsZ family, GTPase domain ACLO_2018 PF00589 Phage integrase family ACLO_2018 PF02899 Phage integrase, N-terminal SAM-like domain ACLO_2019 PF00924 Mechanosensitive ion channel ACLO_2025 PF00171 Aldehyde dehydrogenase family ACLO_2028 PF13746 4Fe-4S dicluster domain ACLO_2028 PF12801 4Fe-4S binding domain ACLO_2028 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ACLO_2029 PF00989 PAS fold ACLO_2029 PF08447 PAS fold ACLO_2029 PF00512 His Kinase A (phospho-acceptor) domain ACLO_2029 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_2030 PF12833 Helix-turn-helix domain ACLO_2030 PF00072 Response regulator receiver domain ACLO_2032 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACLO_2032 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACLO_2032 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACLO_2032 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACLO_2038 PF00258 Flavodoxin ACLO_2039 PF01475 Ferric uptake regulator family ACLO_2041 PF07664 Ferrous iron transport protein B C terminus ACLO_2041 PF07670 Nucleoside recognition ACLO_2041 PF02421 Ferrous iron transport protein B ACLO_2044 PF04377 Arginine-tRNA-protein transferase, C terminus ACLO_2044 PF04376 Arginine-tRNA-protein transferase, N terminus ACLO_2045 PF00290 Tryptophan synthase alpha chain ACLO_2046 PF02548 Ketopantoate hydroxymethyltransferase ACLO_2047 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACLO_2047 PF05491 RuvB C-terminal winged helix domain ACLO_2047 PF17864 RuvB AAA lid domain ACLO_2048 PF01594 AI-2E family transporter ACLO_2050 PF09905 DNA-binding protein VF530 ACLO_2056 PF01695 IstB-like ATP binding protein ACLO_2061 PF04055 Radical SAM superfamily ACLO_2062 PF01208 Uroporphyrinogen decarboxylase (URO-D) ACLO_2064 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACLO_2064 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACLO_2065 PF03989 DNA gyrase C-terminal domain, beta-propeller ACLO_2065 PF00521 DNA gyrase/topoisomerase IV, subunit A ACLO_2067 PF01960 ArgJ family ACLO_2069 PF00830 Ribosomal L28 family ACLO_2072 PF01370 NAD dependent epimerase/dehydratase family ACLO_2073 PF01467 Cytidylyltransferase-like ACLO_2073 PF00294 pfkB family carbohydrate kinase ACLO_2074 PF13580 SIS domain ACLO_2075 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACLO_2078 PF00535 Glycosyl transferase family 2 ACLO_2081 PF13439 Glycosyltransferase Family 4 ACLO_2081 PF00534 Glycosyl transferases group 1 ACLO_2082 PF00535 Glycosyl transferase family 2 ACLO_2085 PF00535 Glycosyl transferase family 2 ACLO_2086 PF16363 GDP-mannose 4,6 dehydratase ACLO_2088 PF04321 RmlD substrate binding domain ACLO_2089 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACLO_2090 PF00483 Nucleotidyl transferase ACLO_2094 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACLO_2095 PF02541 Ppx/GppA phosphatase family ACLO_2096 PF00037 4Fe-4S binding domain ACLO_2098 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACLO_2098 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ACLO_2099 PF00310 Glutamine amidotransferases class-II ACLO_2099 PF01493 GXGXG motif ACLO_2099 PF01645 Conserved region in glutamate synthase ACLO_2099 PF04898 Glutamate synthase central domain ACLO_2100 PF03009 Glycerophosphoryl diester phosphodiesterase family ACLO_2106 PF08447 PAS fold ACLO_2106 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_2106 PF08448 PAS fold ACLO_2113 PF02719 Polysaccharide biosynthesis protein ACLO_2114 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACLO_2115 PF00953 Glycosyl transferase family 4 ACLO_2118 PF01850 PIN domain ACLO_2123 PF01370 NAD dependent epimerase/dehydratase family ACLO_2125 PF01370 NAD dependent epimerase/dehydratase family ACLO_2128 PF00535 Glycosyl transferase family 2 ACLO_2130 PF00535 Glycosyl transferase family 2 ACLO_2132 PF00132 Bacterial transferase hexapeptide (six repeats) ACLO_2135 PF13419 Haloacid dehalogenase-like hydrolase ACLO_2136 PF02348 Cytidylyltransferase ACLO_2139 PF16363 GDP-mannose 4,6 dehydratase ACLO_2142 PF04321 RmlD substrate binding domain ACLO_2143 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACLO_2144 PF00483 Nucleotidyl transferase ACLO_2145 PF00885 6,7-dimethyl-8-ribityllumazine synthase ACLO_2146 PF01029 NusB family ACLO_2147 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACLO_2153 PF00793 DAHP synthetase I family ACLO_2157 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACLO_2160 PF03958 Bacterial type II/III secretion system short domain ACLO_2160 PF00263 Bacterial type II and III secretion system protein ACLO_2161 PF09186 Domain of unknown function (DUF1949) ACLO_2161 PF01205 Uncharacterized protein family UPF0029 ACLO_2162 PF01479 S4 domain ACLO_2162 PF01728 FtsJ-like methyltransferase ACLO_2163 PF06574 FAD synthetase ACLO_2163 PF01687 Riboflavin kinase ACLO_2164 PF13649 Methyltransferase domain ACLO_2165 PF00578 AhpC/TSA family ACLO_2167 PF01565 FAD binding domain ACLO_2167 PF02913 FAD linked oxidases, C-terminal domain ACLO_2168 PF03631 Virulence factor BrkB ACLO_2176 PF10431 C-terminal, D2-small domain, of ClpB protein ACLO_2176 PF02861 Clp amino terminal domain, pathogenicity island component ACLO_2176 PF00004 ATPase family associated with various cellular activities (AAA) ACLO_2176 PF17871 AAA lid domain ACLO_2176 PF07724 AAA domain (Cdc48 subfamily) ACLO_2177 PF02617 ATP-dependent Clp protease adaptor protein ClpS ACLO_2180 PF13193 AMP-binding enzyme C-terminal domain ACLO_2180 PF00501 AMP-binding enzyme ACLO_2181 PF01575 MaoC like domain ACLO_2185 PF02203 Tar ligand binding domain homologue ACLO_2185 PF00672 HAMP domain ACLO_2185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_2186 PF01741 Large-conductance mechanosensitive channel, MscL ACLO_2187 PF01613 Flavin reductase like domain ACLO_2193 PF00771 FHIPEP family ACLO_2194 PF00700 Bacterial flagellin C-terminal helical region ACLO_2194 PF00669 Bacterial flagellin N-terminal helical region ACLO_2195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACLO_2195 PF18269 T3SS EscN ATPase C-terminal domain ACLO_2197 PF01312 FlhB HrpN YscU SpaS Family ACLO_2200 PF00460 Flagella basal body rod protein ACLO_2200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACLO_2201 PF02049 Flagellar hook-basal body complex protein FliE ACLO_2203 PF10609 NUBPL iron-transfer P-loop NTPase ACLO_2204 PF00448 SRP54-type protein, GTPase domain ACLO_2209 PF01618 MotA/TolQ/ExbB proton channel family ACLO_2210 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACLO_2214 PF07196 Flagellin hook IN motif ACLO_2214 PF00460 Flagella basal body rod protein ACLO_2214 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACLO_2214 PF07559 Flagellar basal body protein FlaE ACLO_2215 PF00460 Flagella basal body rod protein ACLO_2215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACLO_2217 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACLO_2219 PF01706 FliG C-terminal domain ACLO_2219 PF14841 FliG middle domain ACLO_2219 PF14842 FliG N-terminal domain ACLO_2220 PF01514 Secretory protein of YscJ/FliF family ACLO_2220 PF08345 Flagellar M-ring protein C-terminal ACLO_2221 PF00460 Flagella basal body rod protein ACLO_2222 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACLO_2222 PF00460 Flagella basal body rod protein ACLO_2224 PF00072 Response regulator receiver domain ACLO_2225 PF00460 Flagella basal body rod protein ACLO_2225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACLO_2228 PF01782 RimM N-terminal domain ACLO_2230 PF00886 Ribosomal protein S16 ACLO_2231 PF02881 SRP54-type protein, helical bundle domain ACLO_2231 PF00448 SRP54-type protein, GTPase domain ACLO_2231 PF02978 Signal peptide binding domain ACLO_2232 PF00849 RNA pseudouridylate synthase ACLO_2233 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ACLO_2233 PF00534 Glycosyl transferases group 1 ACLO_2235 PF01784 NIF3 (NGG1p interacting factor 3) ACLO_2236 PF02091 Glycyl-tRNA synthetase alpha subunit ACLO_2238 PF00731 AIR carboxylase ACLO_2241 PF00672 HAMP domain ACLO_2241 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_2241 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_2241 PF00672 HAMP domain ACLO_2241 PF17200 Single Cache domain 2 ACLO_2241 PF17200 Single Cache domain 2 ACLO_2242 PF13476 AAA domain ACLO_2243 PF01513 ATP-NAD kinase ACLO_2244 PF00009 Elongation factor Tu GTP binding domain ACLO_2244 PF14492 Elongation Factor G, domain II ACLO_2244 PF03764 Elongation factor G, domain IV ACLO_2244 PF03144 Elongation factor Tu domain 2 ACLO_2244 PF00679 Elongation factor G C-terminus ACLO_2245 PF00177 Ribosomal protein S7p/S5e ACLO_2246 PF00164 Ribosomal protein S12/S23 ACLO_2258 PF12161 HsdM N-terminal domain ACLO_2258 PF02384 N-6 DNA Methylase ACLO_2259 PF00990 Diguanylate cyclase, GGDEF domain ACLO_2259 PF08448 PAS fold ACLO_2264 PF00149 Calcineurin-like phosphoesterase ACLO_2269 PF03432 Relaxase/Mobilisation nuclease domain ACLO_2276 PF00589 Phage integrase family ACLO_2276 PF13356 Arm DNA-binding domain ACLO_2279 PF00623 RNA polymerase Rpb1, domain 2 ACLO_2279 PF05000 RNA polymerase Rpb1, domain 4 ACLO_2279 PF04983 RNA polymerase Rpb1, domain 3 ACLO_2279 PF04997 RNA polymerase Rpb1, domain 1 ACLO_2279 PF04998 RNA polymerase Rpb1, domain 5 ACLO_2280 PF04563 RNA polymerase beta subunit ACLO_2280 PF04565 RNA polymerase Rpb2, domain 3 ACLO_2280 PF04561 RNA polymerase Rpb2, domain 2 ACLO_2280 PF00562 RNA polymerase Rpb2, domain 6 ACLO_2280 PF10385 RNA polymerase beta subunit external 1 domain ACLO_2280 PF04560 RNA polymerase Rpb2, domain 7 ACLO_2281 PF00542 Ribosomal protein L7/L12 C-terminal domain ACLO_2281 PF16320 Ribosomal protein L7/L12 dimerisation domain ACLO_2282 PF00466 Ribosomal protein L10 ACLO_2283 PF00687 Ribosomal protein L1p/L10e family ACLO_2284 PF00298 Ribosomal protein L11, RNA binding domain ACLO_2284 PF03946 Ribosomal protein L11, N-terminal domain ACLO_2285 PF02357 Transcription termination factor nusG ACLO_2288 PF00471 Ribosomal protein L33 ACLO_2289 PF00009 Elongation factor Tu GTP binding domain ACLO_2289 PF03144 Elongation factor Tu domain 2 ACLO_2289 PF03143 Elongation factor Tu C-terminal domain ACLO_2294 PF08245 Mur ligase middle domain ACLO_2295 PF00953 Glycosyl transferase family 4 ACLO_2295 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ACLO_2296 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACLO_2296 PF01676 Metalloenzyme superfamily ACLO_2297 PF00005 ABC transporter ACLO_2297 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACLO_2298 PF00905 Penicillin binding protein transpeptidase domain ACLO_2298 PF00912 Transglycosylase ACLO_2298 PF17092 Penicillin-binding protein OB-like domain ACLO_2299 PF03951 Glutamine synthetase, beta-Grasp domain ACLO_2299 PF00120 Glutamine synthetase, catalytic domain ACLO_2301 PF07694 5TMR of 5TMR-LYT ACLO_2301 PF00990 Diguanylate cyclase, GGDEF domain ACLO_2302 PF02391 MoaE protein ACLO_2304 PF02621 Menaquinone biosynthesis ACLO_2306 PF03033 Glycosyltransferase family 28 N-terminal domain ACLO_2306 PF04101 Glycosyltransferase family 28 C-terminal domain ACLO_2307 PF01098 Cell cycle protein ACLO_2309 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACLO_2317 PF00117 Glutamine amidotransferase class-I ACLO_2318 PF13416 Bacterial extracellular solute-binding protein ACLO_2320 PF00005 ABC transporter ACLO_2322 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACLO_2322 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACLO_2327 PF17674 HHH domain ACLO_2327 PF00575 S1 RNA binding domain ACLO_2327 PF16921 Tex protein YqgF-like domain ACLO_2327 PF09371 Tex-like protein N-terminal domain ACLO_2328 PF08448 PAS fold ACLO_2328 PF00990 Diguanylate cyclase, GGDEF domain ACLO_2328 PF00563 EAL domain ACLO_2329 PF01042 Endoribonuclease L-PSP ACLO_2332 PF00155 Aminotransferase class I and II ACLO_2333 PF09335 SNARE associated Golgi protein ACLO_2335 PF01245 Ribosomal protein L19 ACLO_2336 PF01746 tRNA (Guanine-1)-methyltransferase ACLO_2338 PF01717 Cobalamin-independent synthase, Catalytic domain ACLO_2338 PF08267 Cobalamin-independent synthase, N-terminal domain ACLO_2339 PF13291 ACT domain ACLO_2339 PF00291 Pyridoxal-phosphate dependent enzyme ACLO_2340 PF00119 ATP synthase A chain ACLO_2342 PF00580 UvrD/REP helicase N-terminal domain ACLO_2342 PF13361 UvrD-like helicase C-terminal domain ACLO_2343 PF00696 Amino acid kinase family ACLO_2344 PF00291 Pyridoxal-phosphate dependent enzyme ACLO_2346 PF00033 Cytochrome b/b6/petB ACLO_2346 PF00032 Cytochrome b(C-terminal)/b6/petD ACLO_2347 PF00034 Cytochrome c ACLO_2349 PF04452 RNA methyltransferase ACLO_2351 PF03453 MoeA N-terminal region (domain I and II) ACLO_2351 PF03454 MoeA C-terminal region (domain IV) ACLO_2351 PF00994 Probable molybdopterin binding domain ACLO_2352 PF06508 Queuosine biosynthesis protein QueC ACLO_2354 PF04055 Radical SAM superfamily ACLO_2356 PF00550 Phosphopantetheine attachment site ACLO_2357 PF00109 Beta-ketoacyl synthase, N-terminal domain ACLO_2357 PF02801 Beta-ketoacyl synthase, C-terminal domain ACLO_2358 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACLO_2359 PF01230 HIT domain ACLO_2360 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACLO_2360 PF01409 tRNA synthetases class II core domain (F) ACLO_2361 PF03147 Ferredoxin-fold anticodon binding domain ACLO_2361 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACLO_2361 PF01588 Putative tRNA binding domain ACLO_2361 PF03484 tRNA synthetase B5 domain ACLO_2362 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACLO_2363 PF02401 LytB protein ACLO_2364 PF00575 S1 RNA binding domain ACLO_2365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACLO_2365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACLO_2365 PF01842 ACT domain ACLO_2366 PF09285 Elongation factor P, C-terminal ACLO_2366 PF08207 Elongation factor P (EF-P) KOW-like domain ACLO_2366 PF01132 Elongation factor P (EF-P) OB domain ACLO_2367 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACLO_2367 PF01872 RibD C-terminal domain ACLO_2368 PF02576 RimP N-terminal domain ACLO_2369 PF02033 Ribosome-binding factor A ACLO_2370 PF04760 Translation initiation factor IF-2, N-terminal region ACLO_2370 PF11987 Translation-initiation factor 2 ACLO_2370 PF00009 Elongation factor Tu GTP binding domain ACLO_2372 PF08544 GHMP kinases C terminal ACLO_2372 PF00288 GHMP kinases N terminal domain ACLO_2374 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ACLO_2377 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACLO_2377 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACLO_2378 PF02445 Quinolinate synthetase A protein ACLO_2379 PF02660 Glycerol-3-phosphate acyltransferase ACLO_2381 PF05538 Campylobacter major outer membrane protein ACLO_2387 PF00472 RF-1 domain ACLO_2387 PF03462 PCRF domain ACLO_2392 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACLO_2392 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ACLO_2395 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACLO_2396 PF01668 SmpB protein ACLO_2397 PF00288 GHMP kinases N terminal domain ACLO_2398 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACLO_2399 PF13361 UvrD-like helicase C-terminal domain ACLO_2399 PF00580 UvrD/REP helicase N-terminal domain ACLO_2400 PF03466 LysR substrate binding domain ACLO_2400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACLO_2401 PF04055 Radical SAM superfamily ACLO_2401 PF16199 Radical_SAM C-terminal domain ACLO_2402 PF00156 Phosphoribosyl transferase domain ACLO_2402 PF13537 Glutamine amidotransferase domain ACLO_2403 PF01113 Dihydrodipicolinate reductase, N-terminus ACLO_2403 PF05173 Dihydrodipicolinate reductase, C-terminus ACLO_2404 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACLO_2405 PF00085 Thioredoxin ACLO_2406 PF02272 DHHA1 domain ACLO_2406 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACLO_2406 PF01411 tRNA synthetases class II (A) ACLO_2411 PF00877 NlpC/P60 family ACLO_2412 PF00877 NlpC/P60 family ACLO_2415 PF02545 Maf-like protein ACLO_2416 PF00034 Cytochrome c ACLO_2416 PF03150 Di-haem cytochrome c peroxidase ACLO_2417 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ACLO_2417 PF02779 Transketolase, pyrimidine binding domain ACLO_2417 PF02780 Transketolase, C-terminal domain ACLO_2418 PF00155 Aminotransferase class I and II ACLO_2419 PF01842 ACT domain ACLO_2419 PF00800 Prephenate dehydratase ACLO_2419 PF01817 Chorismate mutase type II ACLO_2420 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACLO_2420 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACLO_2422 PF00121 Triosephosphate isomerase ACLO_2423 PF00162 Phosphoglycerate kinase ACLO_2424 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACLO_2424 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACLO_2425 PF01467 Cytidylyltransferase-like ACLO_2427 PF05746 DALR anticodon binding domain ACLO_2427 PF03485 Arginyl tRNA synthetase N terminal domain ACLO_2427 PF00750 tRNA synthetases class I (R) ACLO_2428 PF02416 mttA/Hcf106 family ACLO_2429 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ACLO_2430 PF01553 Acyltransferase ACLO_2433 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ACLO_2434 PF01259 SAICAR synthetase ACLO_2435 PF03572 Peptidase family S41 ACLO_2435 PF13180 PDZ domain ACLO_2438 PF01142 tRNA pseudouridine synthase D (TruD) ACLO_2441 PF12704 MacB-like periplasmic core domain ACLO_2441 PF00005 ABC transporter ACLO_2441 PF02687 FtsX-like permease family ACLO_2447 PF00920 Dehydratase family ACLO_2448 PF13180 PDZ domain ACLO_2448 PF17820 PDZ domain ACLO_2449 PF00486 Transcriptional regulatory protein, C terminal ACLO_2449 PF00072 Response regulator receiver domain ACLO_2452 PF03186 CobD/Cbib protein ACLO_2453 PF11066 Protein of unknown function (DUF2867) ACLO_2453 PF13460 NAD(P)H-binding ACLO_2456 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ACLO_2456 PF07685 CobB/CobQ-like glutamine amidotransferase domain ACLO_2460 PF00155 Aminotransferase class I and II ACLO_2461 PF02654 Cobalamin-5-phosphate synthase ACLO_2463 PF01914 MarC family integral membrane protein ACLO_2464 PF02348 Cytidylyltransferase ACLO_2464 PF13472 GDSL-like Lipase/Acylhydrolase family ACLO_2468 PF11412 Disulphide bond corrector protein DsbC ACLO_2468 PF02683 Cytochrome C biogenesis protein transmembrane region ACLO_2469 PF00085 Thioredoxin ACLO_2470 PF00581 Rhodanese-like domain ACLO_2473 PF08443 RimK-like ATP-grasp domain ACLO_2473 PF18030 RimK PreATP-grasp domain ACLO_2476 PF00990 Diguanylate cyclase, GGDEF domain ACLO_2476 PF10442 FIST C domain ACLO_2476 PF00563 EAL domain ACLO_2476 PF08495 FIST N domain ACLO_2477 PF02666 Phosphatidylserine decarboxylase ACLO_2479 PF06725 3D domain ACLO_2479 PF03562 MltA specific insert domain ACLO_2481 PF00012 Hsp70 protein ACLO_2482 PF01025 GrpE ACLO_2483 PF01628 HrcA protein C terminal domain ACLO_2484 PF16868 NMT1-like family ACLO_2486 PF00072 Response regulator receiver domain ACLO_2486 PF00196 Bacterial regulatory proteins, luxR family ACLO_2487 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_2487 PF08447 PAS fold ACLO_2487 PF08448 PAS fold ACLO_2488 PF01416 tRNA pseudouridine synthase ACLO_2490 PF01478 Type IV leader peptidase family ACLO_2490 PF06750 Bacterial Peptidase A24 N-terminal domain ACLO_2491 PF01255 Putative undecaprenyl diphosphate synthase ACLO_2492 PF04127 DNA / pantothenate metabolism flavoprotein ACLO_2492 PF02441 Flavoprotein ACLO_2493 PF14602 Hexapeptide repeat of succinyl-transferase ACLO_2493 PF12804 MobA-like NTP transferase domain ACLO_2495 PF00270 DEAD/DEAH box helicase ACLO_2495 PF08148 DSHCT (NUC185) domain ACLO_2495 PF00271 Helicase conserved C-terminal domain ACLO_2496 PF05958 tRNA (Uracil-5-)-methyltransferase ACLO_2498 PF07196 Flagellin hook IN motif ACLO_2498 PF00700 Bacterial flagellin C-terminal helical region ACLO_2498 PF00669 Bacterial flagellin N-terminal helical region ACLO_2502 PF02348 Cytidylyltransferase ACLO_2503 PF00483 Nucleotidyl transferase ACLO_2505 PF02350 UDP-N-acetylglucosamine 2-epimerase ACLO_2506 PF13419 Haloacid dehalogenase-like hydrolase ACLO_2509 PF01593 Flavin containing amine oxidoreductase ACLO_2510 PF08666 SAF domain ACLO_2510 PF03102 NeuB family ACLO_2512 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACLO_2513 PF02719 Polysaccharide biosynthesis protein ACLO_2514 PF00270 DEAD/DEAH box helicase ACLO_2514 PF13749 Putative ATP-dependent DNA helicase recG C-terminal ACLO_2514 PF17191 RecG wedge domain ACLO_2516 PF00154 recA bacterial DNA recombination protein ACLO_2517 PF00113 Enolase, C-terminal TIM barrel domain ACLO_2517 PF03952 Enolase, N-terminal domain ACLO_2520 PF04055 Radical SAM superfamily ACLO_2520 PF06968 Biotin and Thiamin Synthesis associated domain ACLO_2522 PF13368 Topoisomerase C-terminal repeat ACLO_2522 PF01751 Toprim domain ACLO_2522 PF01131 DNA topoisomerase ACLO_2523 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ACLO_2524 PF02621 Menaquinone biosynthesis ACLO_2526 PF00361 Proton-conducting membrane transporter ACLO_2527 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ACLO_2527 PF00361 Proton-conducting membrane transporter ACLO_2528 PF00361 Proton-conducting membrane transporter ACLO_2528 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACLO_2529 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACLO_2530 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACLO_2531 PF12838 4Fe-4S dicluster domain ACLO_2532 PF00146 NADH dehydrogenase ACLO_2533 PF12838 4Fe-4S dicluster domain ACLO_2533 PF01568 Molydopterin dinucleotide binding domain ACLO_2533 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACLO_2533 PF00384 Molybdopterin oxidoreductase ACLO_2533 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACLO_2536 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACLO_2537 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACLO_2538 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACLO_2539 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACLO_2540 PF16450 Proteasomal ATPase OB C-terminal domain ACLO_2540 PF17758 Proteasomal ATPase OB N-terminal domain ACLO_2540 PF00004 ATPase family associated with various cellular activities (AAA) ACLO_2545 PF00916 Sulfate permease family ACLO_2545 PF01740 STAS domain ACLO_2546 PF01261 Xylose isomerase-like TIM barrel ACLO_2547 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACLO_2548 PF00209 Sodium:neurotransmitter symporter family ACLO_2550 PF02677 Epoxyqueuosine reductase QueH ACLO_2551 PF02684 Lipid-A-disaccharide synthetase ACLO_2552 PF07977 FabA-like domain ACLO_2553 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ACLO_2553 PF00132 Bacterial transferase hexapeptide (six repeats) ACLO_2554 PF07724 AAA domain (Cdc48 subfamily) ACLO_2554 PF10431 C-terminal, D2-small domain, of ClpB protein ACLO_2554 PF06689 ClpX C4-type zinc finger ACLO_2557 PF00677 Lumazine binding domain ACLO_2558 PF13932 GidA associated domain ACLO_2558 PF01134 Glucose inhibited division protein A ACLO_2561 PF12801 4Fe-4S binding domain ACLO_2561 PF13746 4Fe-4S dicluster domain ACLO_2561 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ACLO_2562 PF00117 Glutamine amidotransferase class-I ACLO_2562 PF06418 CTP synthase N-terminus ACLO_2563 PF01368 DHH family ACLO_2563 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ACLO_2563 PF17768 RecJ OB domain ACLO_2563 PF02272 DHHA1 domain ACLO_2569 PF02811 PHP domain ACLO_2569 PF14579 Helix-hairpin-helix motif ACLO_2569 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACLO_2569 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACLO_2570 PF01975 Survival protein SurE ACLO_2572 PF01165 Ribosomal protein S21 ACLO_2573 PF01967 MoaC family ACLO_2580 PF01027 Inhibitor of apoptosis-promoting Bax1 ACLO_2582 PF03840 Preprotein translocase SecG subunit ACLO_2584 PF01765 Ribosome recycling factor ACLO_2585 PF00156 Phosphoribosyl transferase domain ACLO_2587 PF12832 MFS_1 like family ACLO_2588 PF12794 Mechanosensitive ion channel inner membrane domain 1 ACLO_2588 PF12795 Mechanosensitive ion channel porin domain ACLO_2588 PF00924 Mechanosensitive ion channel ACLO_2589 PF01544 CorA-like Mg2+ transporter protein ACLO_2590 PF03883 Peroxide stress protein YaaA ACLO_2591 PF02810 SEC-C motif ACLO_2596 PF03167 Uracil DNA glycosylase superfamily ACLO_2597 PF00171 Aldehyde dehydrogenase family ACLO_2598 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACLO_2598 PF00205 Thiamine pyrophosphate enzyme, central domain ACLO_2598 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACLO_2599 PF04011 LemA family ACLO_2602 PF13419 Haloacid dehalogenase-like hydrolase ACLO_2604 PF00210 Ferritin-like domain ACLO_2605 PF01047 MarR family ACLO_2606 PF07690 Major Facilitator Superfamily ACLO_2607 PF02203 Tar ligand binding domain homologue ACLO_2607 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_2607 PF00672 HAMP domain ACLO_2619 PF01053 Cys/Met metabolism PLP-dependent enzyme ACLO_2620 PF02082 Transcriptional regulator ACLO_2621 PF00291 Pyridoxal-phosphate dependent enzyme ACLO_2623 PF01507 Phosphoadenosine phosphosulfate reductase family ACLO_2624 PF01507 Phosphoadenosine phosphosulfate reductase family ACLO_2625 PF00009 Elongation factor Tu GTP binding domain ACLO_2626 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACLO_2626 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACLO_2627 PF00266 Aminotransferase class-V ACLO_2630 PF00149 Calcineurin-like phosphoesterase ACLO_2631 PF00011 Hsp20/alpha crystallin family ACLO_2633 PF04168 A predicted alpha-helical domain with a conserved ER motif. ACLO_2633 PF14403 Circularly permuted ATP-grasp type 2 ACLO_2634 PF01841 Transglutaminase-like superfamily ACLO_2634 PF08379 Bacterial transglutaminase-like N-terminal region ACLO_2635 PF12857 TOBE-like domain ACLO_2635 PF00005 ABC transporter ACLO_2635 PF17850 CysA C-terminal regulatory domain ACLO_2636 PF00528 Binding-protein-dependent transport system inner membrane component ACLO_2637 PF00528 Binding-protein-dependent transport system inner membrane component ACLO_2639 PF02082 Transcriptional regulator ACLO_2643 PF14403 Circularly permuted ATP-grasp type 2 ACLO_2645 PF00884 Sulfatase ACLO_2645 PF08019 Phosphoethanolamine transferase EptA/EptB ACLO_2647 PF01219 Prokaryotic diacylglycerol kinase ACLO_2651 PF00486 Transcriptional regulatory protein, C terminal ACLO_2651 PF00072 Response regulator receiver domain ACLO_2653 PF04143 Sulphur transport ACLO_2654 PF01206 Sulfurtransferase TusA ACLO_2655 PF02511 Thymidylate synthase complementing protein ACLO_2656 PF04960 Glutaminase ACLO_2657 PF03458 UPF0126 domain ACLO_2659 PF02911 Formyl transferase, C-terminal domain ACLO_2659 PF00551 Formyl transferase ACLO_2660 PF02075 Crossover junction endodeoxyribonuclease RuvC ACLO_a0001 PF03796 DnaB-like helicase C terminal domain ACLO_a0001 PF00772 DnaB-like helicase N terminal domain ACLO_a0003 PF02195 ParB-like nuclease domain ACLO_a0004 PF13614 AAA domain ACLO_a0006 PF00593 TonB dependent receptor ACLO_a0006 PF07715 TonB-dependent Receptor Plug Domain ACLO_a0010 PF00005 ABC transporter ACLO_a0013 PF00593 TonB dependent receptor ACLO_a0013 PF07715 TonB-dependent Receptor Plug Domain ACLO_a0016 PF00486 Transcriptional regulatory protein, C terminal ACLO_a0016 PF00072 Response regulator receiver domain ACLO_a0018 PF13657 HipA N-terminal domain ACLO_a0018 PF07804 HipA-like C-terminal domain ACLO_a0028 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_a0028 PF08447 PAS fold ACLO_a0029 PF00672 HAMP domain ACLO_a0029 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_a0029 PF02203 Tar ligand binding domain homologue ACLO_a0030 PF02203 Tar ligand binding domain homologue ACLO_a0030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_a0030 PF00672 HAMP domain ACLO_a0034 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_a0034 PF02203 Tar ligand binding domain homologue ACLO_a0034 PF00672 HAMP domain ACLO_a0036 PF01627 Hpt domain ACLO_a0036 PF01584 CheW-like domain ACLO_a0036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_a0036 PF02895 Signal transducing histidine kinase, homodimeric domain ACLO_a0036 PF09078 CheY binding ACLO_a0038 PF00990 Diguanylate cyclase, GGDEF domain ACLO_a0038 PF00563 EAL domain ACLO_a0038 PF01590 GAF domain ACLO_a0038 PF00360 Phytochrome region ACLO_a0041 PF01695 IstB-like ATP binding protein ACLO_a0043 PF01867 CRISPR associated protein Cas1 ACLO_a0046 PF13635 Domain of unknown function (DUF4143) ACLO_a0046 PF13173 AAA domain ACLO_a0060 PF18211 Csm1 subunit domain B ACLO_a0060 PF01966 HD domain ACLO_a0062 PF03787 RAMP superfamily ACLO_a0069 PF07804 HipA-like C-terminal domain ACLO_a0069 PF13657 HipA N-terminal domain ACLO_a0071 PF09827 CRISPR associated protein Cas2 ACLO_a0081 PF00440 Bacterial regulatory proteins, tetR family ACLO_a0081 PF08360 QacR-like protein, C-terminal region ACLO_a0086 PF02899 Phage integrase, N-terminal SAM-like domain ACLO_a0086 PF00589 Phage integrase family ACLO_a0090 PF00196 Bacterial regulatory proteins, luxR family ACLO_a0091 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACLO_a0091 PF00529 HlyD membrane-fusion protein of T1SS ACLO_a0092 PF03412 Peptidase C39 family ACLO_a0092 PF00664 ABC transporter transmembrane region ACLO_a0092 PF00005 ABC transporter ACLO_a0093 PF00691 OmpA family ACLO_a0093 PF05736 OprF membrane domain ACLO_a0094 PF00486 Transcriptional regulatory protein, C terminal ACLO_a0094 PF00072 Response regulator receiver domain ACLO_a0095 PF08448 PAS fold ACLO_a0095 PF08447 PAS fold ACLO_a0095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_a0098 PF00593 TonB dependent receptor ACLO_a0100 PF08448 PAS fold ACLO_a0100 PF00563 EAL domain ACLO_a0100 PF00990 Diguanylate cyclase, GGDEF domain ACLO_a0107 PF00593 TonB dependent receptor ACLO_a0107 PF07715 TonB-dependent Receptor Plug Domain ACLO_a0108 PF17853 GGDEF-like domain ACLO_a0108 PF12833 Helix-turn-helix domain ACLO_a0112 PF07715 TonB-dependent Receptor Plug Domain ACLO_a0112 PF00593 TonB dependent receptor ACLO_a0114 PF00873 AcrB/AcrD/AcrF family ACLO_a0117 PF12833 Helix-turn-helix domain ACLO_a0117 PF00072 Response regulator receiver domain ACLO_a0118 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_a0118 PF00512 His Kinase A (phospho-acceptor) domain ACLO_a0118 PF00989 PAS fold ACLO_a0121 PF10415 Fumarase C C-terminus ACLO_a0121 PF00206 Lyase ACLO_a0125 PF07715 TonB-dependent Receptor Plug Domain ACLO_a0125 PF00593 TonB dependent receptor ACLO_a0127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_a0127 PF07568 Histidine kinase ACLO_a0127 PF12282 Signal transduction histidine kinase ACLO_a0129 PF02203 Tar ligand binding domain homologue ACLO_a0129 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACLO_a0129 PF00672 HAMP domain ACLO_a0130 PF03707 Bacterial signalling protein N terminal repeat ACLO_a0130 PF00990 Diguanylate cyclase, GGDEF domain ACLO_a0130 PF00563 EAL domain ACLO_a0131 PF00800 Prephenate dehydratase ACLO_a0131 PF01842 ACT domain ACLO_a0131 PF01817 Chorismate mutase type II ACLO_a0134 PF02558 Ketopantoate reductase PanE/ApbA ACLO_a0134 PF08546 Ketopantoate reductase PanE/ApbA C terminal ACLO_a0135 PF00561 alpha/beta hydrolase fold ACLO_a0136 PF00296 Luciferase-like monooxygenase ACLO_a0137 PF01361 Tautomerase enzyme ACLO_a0140 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACLO_a0140 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation ACLO_a0142 PF00171 Aldehyde dehydrogenase family ACLO_a0143 PF03928 Haem-degrading ACLO_a0144 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACLO_a0145 PF00175 Oxidoreductase NAD-binding domain ACLO_a0145 PF00111 2Fe-2S iron-sulfur cluster binding domain ACLO_a0145 PF00970 Oxidoreductase FAD-binding domain ACLO_a0149 PF01925 Sulfite exporter TauE/SafE ACLO_a0150 PF00970 Oxidoreductase FAD-binding domain ACLO_a0150 PF00175 Oxidoreductase NAD-binding domain ACLO_a0150 PF00111 2Fe-2S iron-sulfur cluster binding domain ACLO_a0152 PF04945 YHS domain ACLO_a0152 PF02332 Methane/Phenol/Toluene Hydroxylase ACLO_a0153 PF02406 MmoB/DmpM family ACLO_a0154 PF02332 Methane/Phenol/Toluene Hydroxylase ACLO_a0156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACLO_a0156 PF07568 Histidine kinase ACLO_a0156 PF12282 Signal transduction histidine kinase ACLO_a0157 PF00072 Response regulator receiver domain ACLO_a0157 PF00158 Sigma-54 interaction domain ACLO_a0157 PF02954 Bacterial regulatory protein, Fis family ACLO_a0158 PF00106 short chain dehydrogenase ACLO_a0159 PF00180 Isocitrate/isopropylmalate dehydrogenase