locus-tag class description HOO34_00005 PF11638 DnaA N-terminal domain HOO34_00005 PF08299 Bacterial dnaA protein helix-turn-helix HOO34_00005 PF00308 Bacterial dnaA protein HOO34_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HOO34_00010 PF02767 DNA polymerase III beta subunit, central domain HOO34_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HOO34_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_00015 PF01751 Toprim domain HOO34_00015 PF00986 DNA gyrase B subunit, carboxyl terminus HOO34_00015 PF00204 DNA gyrase B HOO34_00020 PF07992 Pyridine nucleotide-disulphide oxidoreductase HOO34_00025 PF14489 QueF-like protein HOO34_00045 PF01980 tRNA-methyltransferase O HOO34_00050 PF13649 Methyltransferase domain HOO34_00060 PF00005 ABC transporter HOO34_00065 PF01032 FecCD transport family HOO34_00075 PF00296 Luciferase-like monooxygenase HOO34_00085 PF08402 TOBE domain HOO34_00085 PF00005 ABC transporter HOO34_00090 PF00528 Binding-protein-dependent transport system inner membrane component HOO34_00105 PF03459 TOBE domain HOO34_00105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HOO34_00115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HOO34_00115 PF03466 LysR substrate binding domain HOO34_00140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HOO34_00140 PF00529 HlyD membrane-fusion protein of T1SS HOO34_00145 PF00873 AcrB/AcrD/AcrF family HOO34_00150 PF02321 Outer membrane efflux protein HOO34_00155 PF00672 HAMP domain HOO34_00155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_00155 PF02203 Tar ligand binding domain homologue HOO34_00160 PF02203 Tar ligand binding domain homologue HOO34_00160 PF00672 HAMP domain HOO34_00160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_00175 PF00293 NUDIX domain HOO34_00190 PF01053 Cys/Met metabolism PLP-dependent enzyme HOO34_00195 PF02082 Transcriptional regulator HOO34_00200 PF00291 Pyridoxal-phosphate dependent enzyme HOO34_00210 PF01507 Phosphoadenosine phosphosulfate reductase family HOO34_00215 PF01507 Phosphoadenosine phosphosulfate reductase family HOO34_00220 PF00009 Elongation factor Tu GTP binding domain HOO34_00230 PF07690 Major Facilitator Superfamily HOO34_00235 PF00210 Ferritin-like domain HOO34_00240 PF13419 Haloacid dehalogenase-like hydrolase HOO34_00245 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HOO34_00245 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HOO34_00245 PF00205 Thiamine pyrophosphate enzyme, central domain HOO34_00250 PF00171 Aldehyde dehydrogenase family HOO34_00255 PF03167 Uracil DNA glycosylase superfamily HOO34_00270 PF03883 Peroxide stress protein YaaA HOO34_00275 PF01544 CorA-like Mg2+ transporter protein HOO34_00290 PF00156 Phosphoribosyl transferase domain HOO34_00295 PF01765 Ribosome recycling factor HOO34_00300 PF03840 Preprotein translocase SecG subunit HOO34_00310 PF17792 ThiD2 family HOO34_00310 PF02581 Thiamine monophosphate synthase HOO34_00315 PF01027 Inhibitor of apoptosis-promoting Bax1 HOO34_00355 PF02677 Epoxyqueuosine reductase QueH HOO34_00360 PF02684 Lipid-A-disaccharide synthetase HOO34_00365 PF07977 FabA-like domain HOO34_00370 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HOO34_00370 PF00132 Bacterial transferase hexapeptide (six repeats) HOO34_00375 PF10431 C-terminal, D2-small domain, of ClpB protein HOO34_00375 PF07724 AAA domain (Cdc48 subfamily) HOO34_00375 PF06689 ClpX C4-type zinc finger HOO34_00390 PF00677 Lumazine binding domain HOO34_00395 PF13932 GidA associated domain HOO34_00395 PF01134 Glucose inhibited division protein A HOO34_00410 PF00069 Protein kinase domain HOO34_00420 PF02384 N-6 DNA Methylase HOO34_00445 PF02899 Phage integrase, N-terminal SAM-like domain HOO34_00445 PF00589 Phage integrase family HOO34_00455 PF01695 IstB-like ATP binding protein HOO34_00465 PF00665 Integrase core domain HOO34_00480 PF01695 IstB-like ATP binding protein HOO34_00525 PF01261 Xylose isomerase-like TIM barrel HOO34_00530 PF00106 short chain dehydrogenase HOO34_00535 PF01740 STAS domain HOO34_00535 PF00916 Sulfate permease family HOO34_00550 PF00004 ATPase family associated with various cellular activities (AAA) HOO34_00550 PF16450 Proteasomal ATPase OB C-terminal domain HOO34_00550 PF17758 Proteasomal ATPase OB N-terminal domain HOO34_00560 PF02621 Menaquinone biosynthesis HOO34_00565 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HOO34_00575 PF04221 RelB antitoxin HOO34_00585 PF01751 Toprim domain HOO34_00585 PF01131 DNA topoisomerase HOO34_00585 PF13368 Topoisomerase C-terminal repeat HOO34_00595 PF04055 Radical SAM superfamily HOO34_00595 PF06968 Biotin and Thiamin Synthesis associated domain HOO34_00600 PF00154 recA bacterial DNA recombination protein HOO34_00610 PF02719 Polysaccharide biosynthesis protein HOO34_00615 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HOO34_00620 PF17191 RecG wedge domain HOO34_00620 PF13749 Putative ATP-dependent DNA helicase recG C-terminal HOO34_00620 PF00270 DEAD/DEAH box helicase HOO34_00625 PF02348 Cytidylyltransferase HOO34_00630 PF08666 SAF domain HOO34_00630 PF03102 NeuB family HOO34_00655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HOO34_00655 PF00205 Thiamine pyrophosphate enzyme, central domain HOO34_00655 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HOO34_00660 PF00205 Thiamine pyrophosphate enzyme, central domain HOO34_00660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HOO34_00660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HOO34_00670 PF02142 MGS-like domain HOO34_00670 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HOO34_00670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HOO34_00675 PF02911 Formyl transferase, C-terminal domain HOO34_00675 PF00551 Formyl transferase HOO34_00680 PF02585 GlcNAc-PI de-N-acetylase HOO34_00690 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HOO34_00690 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HOO34_00690 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HOO34_00695 PF01370 NAD dependent epimerase/dehydratase family HOO34_00710 PF07196 Flagellin hook IN motif HOO34_00710 PF00669 Bacterial flagellin N-terminal helical region HOO34_00710 PF00700 Bacterial flagellin C-terminal helical region HOO34_00715 PF00700 Bacterial flagellin C-terminal helical region HOO34_00715 PF07196 Flagellin hook IN motif HOO34_00715 PF00669 Bacterial flagellin N-terminal helical region HOO34_00730 PF05958 tRNA (Uracil-5-)-methyltransferase HOO34_00745 PF17191 RecG wedge domain HOO34_00745 PF00270 DEAD/DEAH box helicase HOO34_00745 PF00271 Helicase conserved C-terminal domain HOO34_00755 PF14602 Hexapeptide repeat of succinyl-transferase HOO34_00755 PF12804 MobA-like NTP transferase domain HOO34_00760 PF04127 DNA / pantothenate metabolism flavoprotein HOO34_00760 PF02441 Flavoprotein HOO34_00765 PF01255 Putative undecaprenyl diphosphate synthase HOO34_00780 PF01416 tRNA pseudouridine synthase HOO34_00790 PF01628 HrcA protein C terminal domain HOO34_00795 PF01025 GrpE HOO34_00800 PF00012 Hsp70 protein HOO34_00820 PF04028 Domain of unknown function (DUF374) HOO34_00825 PF04055 Radical SAM superfamily HOO34_00825 PF01938 TRAM domain HOO34_00825 PF00919 Uncharacterized protein family UPF0004 HOO34_00835 PF08529 NusA N-terminal domain HOO34_00835 PF13184 NusA-like KH domain HOO34_00840 PF09190 DALR domain HOO34_00840 PF01406 tRNA synthetases class I (C) catalytic domain HOO34_00860 PF03960 ArsC family HOO34_00865 PF02686 Glu-tRNAGln amidotransferase C subunit HOO34_00870 PF01702 Queuine tRNA-ribosyltransferase HOO34_00885 PF01225 Mur ligase family, catalytic domain HOO34_00885 PF02875 Mur ligase family, glutamate ligase domain HOO34_00885 PF08245 Mur ligase middle domain HOO34_00900 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HOO34_00900 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HOO34_00905 PF00773 RNB domain HOO34_00915 PF06144 DNA polymerase III, delta subunit HOO34_00920 PF01250 Ribosomal protein S6 HOO34_00925 PF00436 Single-strand binding protein family HOO34_00930 PF01084 Ribosomal protein S18 HOO34_00935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HOO34_00940 PF03462 PCRF domain HOO34_00940 PF00472 RF-1 domain HOO34_00955 PF02660 Glycerol-3-phosphate acyltransferase HOO34_00960 PF02445 Quinolinate synthetase A protein HOO34_00965 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HOO34_00965 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HOO34_00980 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HOO34_00990 PF00288 GHMP kinases N terminal domain HOO34_00990 PF08544 GHMP kinases C terminal HOO34_01000 PF00009 Elongation factor Tu GTP binding domain HOO34_01000 PF04760 Translation initiation factor IF-2, N-terminal region HOO34_01000 PF11987 Translation-initiation factor 2 HOO34_01005 PF02033 Ribosome-binding factor A HOO34_01010 PF02576 RimP N-terminal domain HOO34_01015 PF01872 RibD C-terminal domain HOO34_01015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HOO34_01045 PF09285 Elongation factor P, C-terminal HOO34_01045 PF01132 Elongation factor P (EF-P) OB domain HOO34_01045 PF08207 Elongation factor P (EF-P) KOW-like domain HOO34_01050 PF01842 ACT domain HOO34_01050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HOO34_01050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HOO34_01055 PF00575 S1 RNA binding domain HOO34_01060 PF02401 LytB protein HOO34_01065 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HOO34_01070 PF03147 Ferredoxin-fold anticodon binding domain HOO34_01070 PF03484 tRNA synthetase B5 domain HOO34_01070 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HOO34_01070 PF01588 Putative tRNA binding domain HOO34_01075 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HOO34_01075 PF01409 tRNA synthetases class II core domain (F) HOO34_01080 PF01230 HIT domain HOO34_01085 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HOO34_01090 PF00109 Beta-ketoacyl synthase, N-terminal domain HOO34_01090 PF02801 Beta-ketoacyl synthase, C-terminal domain HOO34_01095 PF00550 Phosphopantetheine attachment site HOO34_01115 PF06508 Queuosine biosynthesis protein QueC HOO34_01135 PF00032 Cytochrome b(C-terminal)/b6/petD HOO34_01135 PF00033 Cytochrome b/b6/petB HOO34_01145 PF00291 Pyridoxal-phosphate dependent enzyme HOO34_01150 PF00696 Amino acid kinase family HOO34_01155 PF00580 UvrD/REP helicase N-terminal domain HOO34_01155 PF13361 UvrD-like helicase C-terminal domain HOO34_01165 PF00119 ATP synthase A chain HOO34_01170 PF00291 Pyridoxal-phosphate dependent enzyme HOO34_01170 PF13291 ACT domain HOO34_01175 PF01116 Fructose-bisphosphate aldolase class-II HOO34_01185 PF00486 Transcriptional regulatory protein, C terminal HOO34_01185 PF00072 Response regulator receiver domain HOO34_01190 PF00512 His Kinase A (phospho-acceptor) domain HOO34_01190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_01195 PF01545 Cation efflux family HOO34_01195 PF16916 Dimerisation domain of Zinc Transporter HOO34_01225 PF02403 Seryl-tRNA synthetase N-terminal domain HOO34_01225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HOO34_01235 PF00563 EAL domain HOO34_01235 PF08495 FIST N domain HOO34_01235 PF10442 FIST C domain HOO34_01235 PF00990 Diguanylate cyclase, GGDEF domain HOO34_01255 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HOO34_01260 PF12801 4Fe-4S binding domain HOO34_01260 PF00037 4Fe-4S binding domain HOO34_01265 PF12838 4Fe-4S dicluster domain HOO34_01265 PF12800 4Fe-4S binding domain HOO34_01270 PF00384 Molybdopterin oxidoreductase HOO34_01270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HOO34_01270 PF10518 TAT (twin-arginine translocation) pathway signal sequence HOO34_01270 PF01568 Molydopterin dinucleotide binding domain HOO34_01285 PF02885 Glycosyl transferase family, helical bundle domain HOO34_01285 PF00591 Glycosyl transferase family, a/b domain HOO34_01290 PF06463 Molybdenum Cofactor Synthesis C HOO34_01290 PF04055 Radical SAM superfamily HOO34_01295 PF00312 Ribosomal protein S15 HOO34_01315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HOO34_01315 PF00072 Response regulator receiver domain HOO34_01315 PF01627 Hpt domain HOO34_01315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_01315 PF00512 His Kinase A (phospho-acceptor) domain HOO34_01315 PF00672 HAMP domain HOO34_01320 PF00072 Response regulator receiver domain HOO34_01325 PF00672 HAMP domain HOO34_01325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_01325 PF02203 Tar ligand binding domain homologue HOO34_01350 PF01575 MaoC like domain HOO34_01355 PF13193 AMP-binding enzyme C-terminal domain HOO34_01355 PF00501 AMP-binding enzyme HOO34_01370 PF07728 AAA domain (dynein-related subfamily) HOO34_01370 PF12102 Domain of unknown function (DUF3578) HOO34_01385 PF02617 ATP-dependent Clp protease adaptor protein ClpS HOO34_01390 PF07724 AAA domain (Cdc48 subfamily) HOO34_01390 PF00004 ATPase family associated with various cellular activities (AAA) HOO34_01390 PF17871 AAA lid domain HOO34_01390 PF02861 Clp amino terminal domain, pathogenicity island component HOO34_01390 PF10431 C-terminal, D2-small domain, of ClpB protein HOO34_01425 PF00113 Enolase, C-terminal TIM barrel domain HOO34_01425 PF03952 Enolase, N-terminal domain HOO34_01440 PF07690 Major Facilitator Superfamily HOO34_01450 PF00164 Ribosomal protein S12/S23 HOO34_01455 PF00177 Ribosomal protein S7p/S5e HOO34_01460 PF03764 Elongation factor G, domain IV HOO34_01460 PF00009 Elongation factor Tu GTP binding domain HOO34_01460 PF03144 Elongation factor Tu domain 2 HOO34_01460 PF00679 Elongation factor G C-terminus HOO34_01460 PF14492 Elongation Factor G, domain II HOO34_01465 PF01513 ATP-NAD kinase HOO34_01470 PF13476 AAA domain HOO34_01475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_01475 PF17200 Single Cache domain 2 HOO34_01475 PF00672 HAMP domain HOO34_01475 PF17200 Single Cache domain 2 HOO34_01475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_01475 PF00672 HAMP domain HOO34_01480 PF01136 Peptidase family U32 HOO34_01490 PF00731 AIR carboxylase HOO34_01500 PF02091 Glycyl-tRNA synthetase alpha subunit HOO34_01505 PF01784 NIF3 (NGG1p interacting factor 3) HOO34_01515 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HOO34_01515 PF02390 Putative methyltransferase HOO34_01520 PF00849 RNA pseudouridylate synthase HOO34_01525 PF00448 SRP54-type protein, GTPase domain HOO34_01525 PF02881 SRP54-type protein, helical bundle domain HOO34_01525 PF02978 Signal peptide binding domain HOO34_01530 PF00886 Ribosomal protein S16 HOO34_01540 PF01782 RimM N-terminal domain HOO34_01555 PF00460 Flagella basal body rod protein HOO34_01555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HOO34_01560 PF00072 Response regulator receiver domain HOO34_01570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HOO34_01570 PF00460 Flagella basal body rod protein HOO34_01575 PF00460 Flagella basal body rod protein HOO34_01580 PF01514 Secretory protein of YscJ/FliF family HOO34_01580 PF08345 Flagellar M-ring protein C-terminal HOO34_01585 PF14842 FliG N-terminal domain HOO34_01585 PF01706 FliG C-terminal domain HOO34_01585 PF14841 FliG middle domain HOO34_01595 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HOO34_01605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HOO34_01605 PF00460 Flagella basal body rod protein HOO34_01605 PF07196 Flagellin hook IN motif HOO34_01605 PF07559 Flagellar basal body protein FlaE HOO34_01610 PF00460 Flagella basal body rod protein HOO34_01610 PF07196 Flagellin hook IN motif HOO34_01630 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HOO34_01630 PF16973 Flagellar motor switch protein FliN N-terminal HOO34_01650 PF00448 SRP54-type protein, GTPase domain HOO34_01655 PF10609 NUBPL iron-transfer P-loop NTPase HOO34_01665 PF02049 Flagellar hook-basal body complex protein FliE HOO34_01670 PF00460 Flagella basal body rod protein HOO34_01670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HOO34_01685 PF01312 FlhB HrpN YscU SpaS Family HOO34_01695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HOO34_01695 PF18269 T3SS EscN ATPase C-terminal domain HOO34_01705 PF00771 FHIPEP family HOO34_01715 PF01613 Flavin reductase like domain HOO34_01725 PF02203 Tar ligand binding domain homologue HOO34_01725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_01725 PF00672 HAMP domain HOO34_01730 PF08267 Cobalamin-independent synthase, N-terminal domain HOO34_01730 PF01717 Cobalamin-independent synthase, Catalytic domain HOO34_01740 PF01746 tRNA (Guanine-1)-methyltransferase HOO34_01745 PF01245 Ribosomal protein L19 HOO34_01750 PF09335 SNARE associated Golgi protein HOO34_01755 PF00155 Aminotransferase class I and II HOO34_01760 PF12833 Helix-turn-helix domain HOO34_01780 PF00005 ABC transporter HOO34_01780 PF14524 Wzt C-terminal domain HOO34_01790 PF00534 Glycosyl transferases group 1 HOO34_01805 PF00589 Phage integrase family HOO34_01885 PF00589 Phage integrase family HOO34_01890 PF05973 Phage derived protein Gp49-like (DUF891) HOO34_01895 PF01381 Helix-turn-helix HOO34_01960 PF09820 Predicted AAA-ATPase HOO34_01960 PF08011 PD-(D/E)XK nuclease superfamily HOO34_01990 PF00005 ABC transporter HOO34_01990 PF00664 ABC transporter transmembrane region HOO34_01995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HOO34_01995 PF00529 HlyD membrane-fusion protein of T1SS HOO34_02005 PF16363 GDP-mannose 4,6 dehydratase HOO34_02010 PF01370 NAD dependent epimerase/dehydratase family HOO34_02020 PF13439 Glycosyltransferase Family 4 HOO34_02025 PF02397 Bacterial sugar transferase HOO34_02030 PF01042 Endoribonuclease L-PSP HOO34_02035 PF06738 Putative threonine/serine exporter HOO34_02035 PF12821 Threonine/Serine exporter, ThrE HOO34_02040 PF06738 Putative threonine/serine exporter HOO34_02055 PF01618 MotA/TolQ/ExbB proton channel family HOO34_02065 PF00171 Aldehyde dehydrogenase family HOO34_02070 PF02659 Putative manganese efflux pump HOO34_02085 PF00579 tRNA synthetases class I (W and Y) HOO34_02095 PF01594 AI-2E family transporter HOO34_02105 PF01634 ATP phosphoribosyltransferase HOO34_02110 PF03309 Type III pantothenate kinase HOO34_02135 PF05538 Campylobacter major outer membrane protein HOO34_02140 PF01202 Shikimate kinase HOO34_02145 PF00815 Histidinol dehydrogenase HOO34_02155 PF00348 Polyprenyl synthetase HOO34_02160 PF01488 Shikimate / quinate 5-dehydrogenase HOO34_02160 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HOO34_02160 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HOO34_02165 PF04073 Aminoacyl-tRNA editing domain HOO34_02165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HOO34_02165 PF03129 Anticodon binding domain HOO34_02170 PF05552 Conserved TM helix HOO34_02170 PF00924 Mechanosensitive ion channel HOO34_02175 PF12627 Probable RNA and SrmB- binding site of polymerase A HOO34_02175 PF01966 HD domain HOO34_02175 PF01743 Poly A polymerase head domain HOO34_02195 PF02699 Preprotein translocase subunit HOO34_02200 PF02355 Protein export membrane protein HOO34_02205 PF02355 Protein export membrane protein HOO34_02205 PF07549 SecD/SecF GG Motif HOO34_02215 PF00691 OmpA family HOO34_02215 PF13677 Membrane MotB of proton-channel complex MotA/MotB HOO34_02220 PF01618 MotA/TolQ/ExbB proton channel family HOO34_02230 PF00133 tRNA synthetases class I (I, L, M and V) HOO34_02230 PF13603 Leucyl-tRNA synthetase, Domain 2 HOO34_02230 PF09334 tRNA synthetases class I (M) HOO34_02240 PF08245 Mur ligase middle domain HOO34_02265 PF00270 DEAD/DEAH box helicase HOO34_02265 PF03461 TRCF domain HOO34_02265 PF17757 UvrB interaction domain HOO34_02265 PF02559 CarD-like/TRCF domain HOO34_02265 PF00271 Helicase conserved C-terminal domain HOO34_02290 PF00800 Prephenate dehydratase HOO34_02290 PF01817 Chorismate mutase type II HOO34_02290 PF01842 ACT domain HOO34_02340 PF04357 TamB, inner membrane protein subunit of TAM complex HOO34_02345 PF00905 Penicillin binding protein transpeptidase domain HOO34_02345 PF00912 Transglycosylase HOO34_02350 PF00005 ABC transporter HOO34_02350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HOO34_02355 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HOO34_02355 PF01676 Metalloenzyme superfamily HOO34_02360 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HOO34_02360 PF00953 Glycosyl transferase family 4 HOO34_02365 PF08245 Mur ligase middle domain HOO34_02390 PF00009 Elongation factor Tu GTP binding domain HOO34_02390 PF03144 Elongation factor Tu domain 2 HOO34_02390 PF03143 Elongation factor Tu C-terminal domain HOO34_02395 PF00471 Ribosomal protein L33 HOO34_02410 PF02357 Transcription termination factor nusG HOO34_02415 PF03946 Ribosomal protein L11, N-terminal domain HOO34_02415 PF00298 Ribosomal protein L11, RNA binding domain HOO34_02420 PF00687 Ribosomal protein L1p/L10e family HOO34_02425 PF00466 Ribosomal protein L10 HOO34_02430 PF00542 Ribosomal protein L7/L12 C-terminal domain HOO34_02430 PF16320 Ribosomal protein L7/L12 dimerisation domain HOO34_02435 PF04561 RNA polymerase Rpb2, domain 2 HOO34_02435 PF04565 RNA polymerase Rpb2, domain 3 HOO34_02435 PF10385 RNA polymerase beta subunit external 1 domain HOO34_02435 PF04563 RNA polymerase beta subunit HOO34_02435 PF04560 RNA polymerase Rpb2, domain 7 HOO34_02435 PF00562 RNA polymerase Rpb2, domain 6 HOO34_02440 PF00623 RNA polymerase Rpb1, domain 2 HOO34_02440 PF04997 RNA polymerase Rpb1, domain 1 HOO34_02440 PF04998 RNA polymerase Rpb1, domain 5 HOO34_02440 PF05000 RNA polymerase Rpb1, domain 4 HOO34_02440 PF04983 RNA polymerase Rpb1, domain 3 HOO34_02455 PF00589 Phage integrase family HOO34_02455 PF14659 Phage integrase, N-terminal SAM-like domain HOO34_02455 PF13356 Arm DNA-binding domain HOO34_02510 PF08275 DNA primase catalytic core, N-terminal domain HOO34_02510 PF01807 CHC2 zinc finger HOO34_02565 PF00255 Glutathione peroxidase HOO34_02570 PF10518 TAT (twin-arginine translocation) pathway signal sequence HOO34_02570 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HOO34_02570 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HOO34_02575 PF00374 Nickel-dependent hydrogenase HOO34_02580 PF01292 Prokaryotic cytochrome b561 HOO34_02585 PF01750 Hydrogenase maturation protease HOO34_02610 PF02492 CobW/HypB/UreG, nucleotide-binding domain HOO34_02615 PF01455 HupF/HypC family HOO34_02620 PF01924 Hydrogenase formation hypA family HOO34_02625 PF17761 DUF1016 N-terminal domain HOO34_02625 PF06250 YhcG PDDEXK nuclease domain HOO34_02635 PF00586 AIR synthase related protein, N-terminal domain HOO34_02635 PF02769 AIR synthase related protein, C-terminal domain HOO34_02640 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HOO34_02650 PF13190 PDGLE domain HOO34_02650 PF01891 Cobalt uptake substrate-specific transmembrane region HOO34_02665 PF00005 ABC transporter HOO34_02685 PF00793 DAHP synthetase I family HOO34_02695 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HOO34_02705 PF03631 Virulence factor BrkB HOO34_02710 PF02913 FAD linked oxidases, C-terminal domain HOO34_02710 PF01565 FAD binding domain HOO34_02720 PF00578 AhpC/TSA family HOO34_02725 PF13649 Methyltransferase domain HOO34_02730 PF06574 FAD synthetase HOO34_02730 PF01687 Riboflavin kinase HOO34_02735 PF01728 FtsJ-like methyltransferase HOO34_02735 PF01479 S4 domain HOO34_02745 PF16226 Domain of unknown function (DUF4885) HOO34_02750 PF16226 Domain of unknown function (DUF4885) HOO34_02775 PF09186 Domain of unknown function (DUF1949) HOO34_02775 PF01205 Uncharacterized protein family UPF0029 HOO34_02795 PF00459 Inositol monophosphatase family HOO34_02800 PF00037 4Fe-4S binding domain HOO34_02820 PF01219 Prokaryotic diacylglycerol kinase HOO34_02830 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HOO34_02830 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HOO34_02835 PF01370 NAD dependent epimerase/dehydratase family HOO34_02840 PF00483 Nucleotidyl transferase HOO34_02845 PF16363 GDP-mannose 4,6 dehydratase HOO34_02850 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HOO34_02865 PF00884 Sulfatase HOO34_02870 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 HOO34_02870 PF00535 Glycosyl transferase family 2 HOO34_02875 PF00534 Glycosyl transferases group 1 HOO34_02875 PF13439 Glycosyltransferase Family 4 HOO34_02880 PF08323 Starch synthase catalytic domain HOO34_02880 PF00534 Glycosyl transferases group 1 HOO34_02885 PF00535 Glycosyl transferase family 2 HOO34_02895 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HOO34_02905 PF00884 Sulfatase HOO34_02930 PF00884 Sulfatase HOO34_02935 PF13580 SIS domain HOO34_02940 PF00294 pfkB family carbohydrate kinase HOO34_02940 PF01467 Cytidylyltransferase-like HOO34_02945 PF01370 NAD dependent epimerase/dehydratase family HOO34_02960 PF00830 Ribosomal L28 family HOO34_02970 PF01960 ArgJ family HOO34_02980 PF03989 DNA gyrase C-terminal domain, beta-propeller HOO34_02980 PF00521 DNA gyrase/topoisomerase IV, subunit A HOO34_02985 PF01118 Semialdehyde dehydrogenase, NAD binding domain HOO34_02985 PF02774 Semialdehyde dehydrogenase, dimerisation domain HOO34_02995 PF01208 Uroporphyrinogen decarboxylase (URO-D) HOO34_03055 PF00005 ABC transporter HOO34_03060 PF00950 ABC 3 transport family HOO34_03065 PF13509 S1 domain HOO34_03065 PF17783 CvfB-like winged helix domain HOO34_03070 PF08534 Redoxin HOO34_03090 PF00133 tRNA synthetases class I (I, L, M and V) HOO34_03090 PF10458 Valyl tRNA synthetase tRNA binding arm HOO34_03090 PF08264 Anticodon-binding domain of tRNA HOO34_03110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_03110 PF13426 PAS domain HOO34_03110 PF08447 PAS fold HOO34_03120 PF07690 Major Facilitator Superfamily HOO34_03125 PF01725 Ham1 family HOO34_03145 PF03807 NADP oxidoreductase coenzyme F420-dependent HOO34_03145 PF14748 Pyrroline-5-carboxylate reductase dimerisation HOO34_03155 PF13525 Outer membrane lipoprotein HOO34_03160 PF05362 Lon protease (S16) C-terminal proteolytic domain HOO34_03160 PF00004 ATPase family associated with various cellular activities (AAA) HOO34_03160 PF02190 ATP-dependent protease La (LON) substrate-binding domain HOO34_03170 PF01451 Low molecular weight phosphotyrosine protein phosphatase HOO34_03190 PF02785 Biotin carboxylase C-terminal domain HOO34_03190 PF00289 Biotin carboxylase, N-terminal domain HOO34_03190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HOO34_03205 PF00266 Aminotransferase class-V HOO34_03215 PF00005 ABC transporter HOO34_03220 PF01458 Uncharacterized protein family (UPF0051) HOO34_03225 PF01106 NifU-like domain HOO34_03225 PF04324 BFD-like [2Fe-2S] binding domain HOO34_03225 PF01592 NifU-like N terminal domain HOO34_03235 PF00990 Diguanylate cyclase, GGDEF domain HOO34_03240 PF14698 Argininosuccinate lyase C-terminal HOO34_03240 PF00206 Lyase HOO34_03245 PF17757 UvrB interaction domain HOO34_03245 PF12344 Ultra-violet resistance protein B HOO34_03245 PF04851 Type III restriction enzyme, res subunit HOO34_03245 PF02151 UvrB/uvrC motif HOO34_03245 PF00271 Helicase conserved C-terminal domain HOO34_03255 PF03449 Transcription elongation factor, N-terminal HOO34_03255 PF01272 Transcription elongation factor, GreA/GreB, C-term HOO34_03260 PF00899 ThiF family HOO34_03265 PF00072 Response regulator receiver domain HOO34_03265 PF01584 CheW-like domain HOO34_03275 PF14659 Phage integrase, N-terminal SAM-like domain HOO34_03275 PF00589 Phage integrase family HOO34_03290 PF00665 Integrase core domain HOO34_03295 PF00665 Integrase core domain HOO34_03370 PF00535 Glycosyl transferase family 2 HOO34_03390 PF00534 Glycosyl transferases group 1 HOO34_03390 PF13477 Glycosyl transferase 4-like HOO34_03395 PF02397 Bacterial sugar transferase HOO34_03405 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HOO34_03410 PF16363 GDP-mannose 4,6 dehydratase HOO34_03440 PF00342 Phosphoglucose isomerase HOO34_03445 PF00483 Nucleotidyl transferase HOO34_03450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HOO34_03450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HOO34_03450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HOO34_03450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HOO34_03455 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HOO34_03485 PF01926 50S ribosome-binding GTPase HOO34_03485 PF07650 KH domain HOO34_03510 PF00437 Type II/IV secretion system protein HOO34_03535 PF00482 Type II secretion system (T2SS), protein F HOO34_03540 PF01544 CorA-like Mg2+ transporter protein HOO34_03545 PF01227 GTP cyclohydrolase I HOO34_03595 PF00403 Heavy-metal-associated domain HOO34_03610 PF00313 'Cold-shock' DNA-binding domain HOO34_03625 PF00005 ABC transporter HOO34_03630 PF00762 Ferrochelatase HOO34_03645 PF17805 AsnC-like ligand binding domain HOO34_03650 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HOO34_03650 PF14824 Sirohaem biosynthesis protein central HOO34_03650 PF10414 Sirohaem synthase dimerisation region HOO34_03660 PF14824 Sirohaem biosynthesis protein central HOO34_03660 PF10414 Sirohaem synthase dimerisation region HOO34_03660 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HOO34_03670 PF04055 Radical SAM superfamily HOO34_03670 PF13186 Iron-sulfur cluster-binding domain HOO34_03685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HOO34_03690 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HOO34_03700 PF00115 Cytochrome C and Quinol oxidase polypeptide I HOO34_03705 PF00034 Cytochrome c HOO34_03720 PF01875 Memo-like protein HOO34_03725 PF02698 DUF218 domain HOO34_03750 PF03435 Saccharopine dehydrogenase NADP binding domain HOO34_03750 PF16653 Saccharopine dehydrogenase C-terminal domain HOO34_03755 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HOO34_03760 PF03976 Polyphosphate kinase 2 (PPK2) HOO34_03765 PF03976 Polyphosphate kinase 2 (PPK2) HOO34_03770 PF05697 Bacterial trigger factor protein (TF) HOO34_03770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HOO34_03770 PF05698 Bacterial trigger factor protein (TF) C-terminus HOO34_03775 PF00574 Clp protease HOO34_03780 PF01327 Polypeptide deformylase HOO34_03795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_03795 PF00672 HAMP domain HOO34_03795 PF02203 Tar ligand binding domain homologue HOO34_03800 PF13335 Magnesium chelatase, subunit ChlI C-terminal HOO34_03800 PF01078 Magnesium chelatase, subunit ChlI HOO34_03825 PF03372 Endonuclease/Exonuclease/phosphatase family HOO34_03840 PF00338 Ribosomal protein S10p/S20e HOO34_03845 PF00297 Ribosomal protein L3 HOO34_03850 PF00573 Ribosomal protein L4/L1 family HOO34_03855 PF00276 Ribosomal protein L23 HOO34_03860 PF00181 Ribosomal Proteins L2, RNA binding domain HOO34_03860 PF03947 Ribosomal Proteins L2, C-terminal domain HOO34_03865 PF00203 Ribosomal protein S19 HOO34_03870 PF00237 Ribosomal protein L22p/L17e HOO34_03875 PF07650 KH domain HOO34_03875 PF00189 Ribosomal protein S3, C-terminal domain HOO34_03880 PF00252 Ribosomal protein L16p/L10e HOO34_03885 PF00831 Ribosomal L29 protein HOO34_03890 PF00366 Ribosomal protein S17 HOO34_03895 PF00238 Ribosomal protein L14p/L23e HOO34_03900 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HOO34_03900 PF00467 KOW motif HOO34_03905 PF00281 Ribosomal protein L5 HOO34_03905 PF00673 ribosomal L5P family C-terminus HOO34_03910 PF00253 Ribosomal protein S14p/S29e HOO34_03915 PF00410 Ribosomal protein S8 HOO34_03920 PF00347 Ribosomal protein L6 HOO34_03925 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HOO34_03930 PF03719 Ribosomal protein S5, C-terminal domain HOO34_03930 PF00333 Ribosomal protein S5, N-terminal domain HOO34_03935 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HOO34_03940 PF00344 SecY translocase HOO34_03945 PF00557 Metallopeptidase family M24 HOO34_03950 PF01176 Translation initiation factor 1A / IF-1 HOO34_03955 PF03167 Uracil DNA glycosylase superfamily HOO34_03965 PF02938 GAD domain HOO34_03965 PF01336 OB-fold nucleic acid binding domain HOO34_03965 PF00152 tRNA synthetases class II (D, K and N) HOO34_03970 PF04055 Radical SAM superfamily HOO34_03970 PF08497 Radical SAM N-terminal HOO34_03980 PF03466 LysR substrate binding domain HOO34_03980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HOO34_04000 PF03601 Conserved hypothetical protein 698 HOO34_04025 PF03062 MBOAT, membrane-bound O-acyltransferase family HOO34_04030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_04030 PF02203 Tar ligand binding domain homologue HOO34_04030 PF00672 HAMP domain HOO34_04035 PF01926 50S ribosome-binding GTPase HOO34_04035 PF06071 Protein of unknown function (DUF933) HOO34_04040 PF08668 HDOD domain HOO34_04055 PF06865 Pyrimidine/purine nucleoside phosphorylase HOO34_04070 PF01925 Sulfite exporter TauE/SafE HOO34_04075 PF06426 Serine acetyltransferase, N-terminal HOO34_04075 PF00132 Bacterial transferase hexapeptide (six repeats) HOO34_04080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HOO34_04080 PF17944 Arginine decarboxylase C-terminal helical extension HOO34_04080 PF17810 Arginine decarboxylase helical bundle domain HOO34_04085 PF03129 Anticodon binding domain HOO34_04085 PF13393 Histidyl-tRNA synthetase HOO34_04090 PF02223 Thymidylate kinase HOO34_04095 PF01467 Cytidylyltransferase-like HOO34_04100 PF02441 Flavoprotein HOO34_04110 PF01281 Ribosomal protein L9, N-terminal domain HOO34_04110 PF03948 Ribosomal protein L9, C-terminal domain HOO34_04115 PF00227 Proteasome subunit HOO34_04120 PF10431 C-terminal, D2-small domain, of ClpB protein HOO34_04120 PF07724 AAA domain (Cdc48 subfamily) HOO34_04130 PF01026 TatD related DNase HOO34_04140 PF05036 Sporulation related domain HOO34_04140 PF03330 Lytic transglycolase HOO34_04145 PF00475 Imidazoleglycerol-phosphate dehydratase HOO34_04165 PF01926 50S ribosome-binding GTPase HOO34_04170 PF00583 Acetyltransferase (GNAT) family HOO34_04185 PF01312 FlhB HrpN YscU SpaS Family HOO34_04195 PF00682 HMGL-like HOO34_04200 PF00075 RNase H HOO34_04205 PF02203 Tar ligand binding domain homologue HOO34_04205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_04205 PF00672 HAMP domain HOO34_04220 PF00270 DEAD/DEAH box helicase HOO34_04220 PF00271 Helicase conserved C-terminal domain HOO34_04225 PF00403 Heavy-metal-associated domain HOO34_04240 PF00873 AcrB/AcrD/AcrF family HOO34_04245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HOO34_04245 PF00529 HlyD membrane-fusion protein of T1SS HOO34_04260 PF00072 Response regulator receiver domain HOO34_04260 PF00486 Transcriptional regulatory protein, C terminal HOO34_04265 PF08448 PAS fold HOO34_04265 PF08447 PAS fold HOO34_04265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_04270 PF01641 SelR domain HOO34_04270 PF01625 Peptide methionine sulfoxide reductase HOO34_04270 PF08534 Redoxin HOO34_04275 PF00873 AcrB/AcrD/AcrF family HOO34_04280 PF00873 AcrB/AcrD/AcrF family HOO34_04285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HOO34_04295 PF11849 Domain of unknown function (DUF3369) HOO34_04305 PF00813 FliP family HOO34_04310 PF03717 Penicillin-binding Protein dimerisation domain HOO34_04310 PF00905 Penicillin binding protein transpeptidase domain HOO34_04330 PF00005 ABC transporter HOO34_04335 PF02390 Putative methyltransferase HOO34_04345 PF00849 RNA pseudouridylate synthase HOO34_04345 PF01479 S4 domain HOO34_04350 PF01098 Cell cycle protein HOO34_04360 PF00202 Aminotransferase class-III HOO34_04365 PF06865 Pyrimidine/purine nucleoside phosphorylase HOO34_04450 PF00174 Oxidoreductase molybdopterin binding domain HOO34_04455 PF02254 TrkA-N domain HOO34_04455 PF02080 TrkA-C domain HOO34_04455 PF00999 Sodium/hydrogen exchanger family HOO34_04460 PF00580 UvrD/REP helicase N-terminal domain HOO34_04460 PF13361 UvrD-like helicase C-terminal domain HOO34_04465 PF00586 AIR synthase related protein, N-terminal domain HOO34_04465 PF02769 AIR synthase related protein, C-terminal domain HOO34_04470 PF01841 Transglutaminase-like superfamily HOO34_04490 PF00158 Sigma-54 interaction domain HOO34_04490 PF00072 Response regulator receiver domain HOO34_04495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_04495 PF08447 PAS fold HOO34_04495 PF08448 PAS fold HOO34_04520 PF12838 4Fe-4S dicluster domain HOO34_04520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HOO34_04520 PF00384 Molybdopterin oxidoreductase HOO34_04520 PF01568 Molydopterin dinucleotide binding domain HOO34_04520 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HOO34_04525 PF00384 Molybdopterin oxidoreductase HOO34_04525 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HOO34_04525 PF01568 Molydopterin dinucleotide binding domain HOO34_04530 PF13247 4Fe-4S dicluster domain HOO34_04540 PF02634 FdhD/NarQ family HOO34_04560 PF03454 MoeA C-terminal region (domain IV) HOO34_04560 PF00994 Probable molybdopterin binding domain HOO34_04560 PF03453 MoeA N-terminal region (domain I and II) HOO34_04565 PF12849 PBP superfamily domain HOO34_04570 PF00528 Binding-protein-dependent transport system inner membrane component HOO34_04575 PF00005 ABC transporter HOO34_04590 PF12823 Domain of unknown function (DUF3817) HOO34_04605 PF05661 Protein of unknown function (DUF808) HOO34_04610 PF01522 Polysaccharide deacetylase HOO34_04610 PF03422 Carbohydrate binding module (family 6) HOO34_04610 PF00457 Glycosyl hydrolases family 11 HOO34_04620 PF02384 N-6 DNA Methylase HOO34_04640 PF17761 DUF1016 N-terminal domain HOO34_04640 PF06250 YhcG PDDEXK nuclease domain HOO34_04650 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 HOO34_04650 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) HOO34_04675 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HOO34_04675 PF00270 DEAD/DEAH box helicase HOO34_04675 PF00271 Helicase conserved C-terminal domain HOO34_04675 PF17764 3′ DNA-binding domain (3′BD) HOO34_04675 PF18074 Primosomal protein N C-terminal domain HOO34_04680 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HOO34_04680 PF14602 Hexapeptide repeat of succinyl-transferase HOO34_04685 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HOO34_04685 PF18381 YcaO cyclodehydratase C-terminal domain HOO34_04690 PF12833 Helix-turn-helix domain HOO34_04690 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HOO34_04690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HOO34_04690 PF02805 Metal binding domain of Ada HOO34_04695 PF00464 Serine hydroxymethyltransferase HOO34_04725 PF00571 CBS domain HOO34_04725 PF03471 Transporter associated domain HOO34_04725 PF01595 Cyclin M transmembrane N-terminal domain HOO34_04755 PF01594 AI-2E family transporter HOO34_04760 PF05496 Holliday junction DNA helicase RuvB P-loop domain HOO34_04760 PF17864 RuvB AAA lid domain HOO34_04760 PF05491 RuvB C-terminal winged helix domain HOO34_04765 PF02548 Ketopantoate hydroxymethyltransferase HOO34_04770 PF00290 Tryptophan synthase alpha chain HOO34_04775 PF04377 Arginine-tRNA-protein transferase, C terminus HOO34_04775 PF04376 Arginine-tRNA-protein transferase, N terminus HOO34_04785 PF07664 Ferrous iron transport protein B C terminus HOO34_04785 PF02421 Ferrous iron transport protein B HOO34_04785 PF07670 Nucleoside recognition HOO34_04795 PF01475 Ferric uptake regulator family HOO34_04800 PF00764 Arginosuccinate synthase HOO34_04805 PF00528 Binding-protein-dependent transport system inner membrane component HOO34_04805 PF12911 N-terminal TM domain of oligopeptide transport permease C HOO34_04815 PF12072 Domain of unknown function (DUF3552) HOO34_04815 PF00013 KH domain HOO34_04815 PF01966 HD domain HOO34_04820 PF01812 5-formyltetrahydrofolate cyclo-ligase family HOO34_04830 PF00448 SRP54-type protein, GTPase domain HOO34_04860 PF02525 Flavodoxin-like fold HOO34_04865 PF00881 Nitroreductase family HOO34_04875 PF12848 ABC transporter HOO34_04875 PF00005 ABC transporter HOO34_04880 PF03061 Thioesterase superfamily HOO34_04885 PF00672 HAMP domain HOO34_04885 PF02203 Tar ligand binding domain homologue HOO34_04885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_04890 PF00672 HAMP domain HOO34_04890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_04890 PF02203 Tar ligand binding domain homologue HOO34_04900 PF00226 DnaJ domain HOO34_04900 PF01556 DnaJ C terminal domain HOO34_04900 PF00684 DnaJ central domain HOO34_04905 PF00226 DnaJ domain HOO34_04905 PF01556 DnaJ C terminal domain HOO34_04905 PF00684 DnaJ central domain HOO34_04910 PF00933 Glycosyl hydrolase family 3 N terminal domain HOO34_04925 PF00106 short chain dehydrogenase HOO34_04935 PF02885 Glycosyl transferase family, helical bundle domain HOO34_04935 PF00591 Glycosyl transferase family, a/b domain HOO34_04940 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HOO34_04945 PF00005 ABC transporter HOO34_04945 PF12399 Branched-chain amino acid ATP-binding cassette transporter HOO34_04950 PF02348 Cytidylyltransferase HOO34_04960 PF01339 CheB methylesterase HOO34_04960 PF00072 Response regulator receiver domain HOO34_04970 PF09411 Lipid A 3-O-deacylase (PagL) HOO34_04975 PF01790 Prolipoprotein diacylglyceryl transferase HOO34_05020 PF00893 Small Multidrug Resistance protein HOO34_05025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_05030 PF00486 Transcriptional regulatory protein, C terminal HOO34_05030 PF00072 Response regulator receiver domain HOO34_05040 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HOO34_05050 PF00330 Aconitase family (aconitate hydratase) HOO34_05050 PF11791 Aconitate B N-terminal domain HOO34_05050 PF06434 Aconitate hydratase 2 N-terminus HOO34_05055 PF00156 Phosphoribosyl transferase domain HOO34_05060 PF04241 Protein of unknown function (DUF423) HOO34_05065 PF04461 Protein of unknown function (DUF520) HOO34_05070 PF00293 NUDIX domain HOO34_05100 PF00925 GTP cyclohydrolase II HOO34_05100 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HOO34_05105 PF01293 Phosphoenolpyruvate carboxykinase HOO34_05120 PF01588 Putative tRNA binding domain HOO34_05120 PF00133 tRNA synthetases class I (I, L, M and V) HOO34_05120 PF09334 tRNA synthetases class I (M) HOO34_05130 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HOO34_05160 PF00749 tRNA synthetases class I (E and Q), catalytic domain HOO34_05170 PF04055 Radical SAM superfamily HOO34_05175 PF07244 Surface antigen variable number repeat HOO34_05175 PF01103 Surface antigen HOO34_05180 PF01842 ACT domain HOO34_05180 PF02153 Prephenate dehydrogenase HOO34_05195 PF01568 Molydopterin dinucleotide binding domain HOO34_05195 PF00384 Molybdopterin oxidoreductase HOO34_05195 PF18364 Molybdopterin oxidoreductase N-terminal domain HOO34_05200 PF03144 Elongation factor Tu domain 2 HOO34_05200 PF09105 Elongation factor SelB, winged helix HOO34_05200 PF09106 Elongation factor SelB, winged helix HOO34_05200 PF09107 Elongation factor SelB, winged helix HOO34_05200 PF00009 Elongation factor Tu GTP binding domain HOO34_05205 PF03841 L-seryl-tRNA selenium transferase HOO34_05210 PF02253 Phospholipase A1 HOO34_05220 PF00834 Ribulose-phosphate 3 epimerase family HOO34_05225 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HOO34_05230 PF02811 PHP domain HOO34_05230 PF14579 Helix-hairpin-helix motif HOO34_05230 PF14480 DNA polymerase III polC-type N-terminus I HOO34_05230 PF11490 DNA polymerase III polC-type N-terminus II HOO34_05230 PF07733 Bacterial DNA polymerase III alpha NTPase domain HOO34_05230 PF00929 Exonuclease HOO34_05230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HOO34_05240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HOO34_05245 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HOO34_05245 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HOO34_05245 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HOO34_05255 PF05175 Methyltransferase small domain HOO34_05260 PF03692 Putative zinc- or iron-chelating domain HOO34_05270 PF00218 Indole-3-glycerol phosphate synthase HOO34_05275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HOO34_05275 PF03466 LysR substrate binding domain HOO34_05280 PF01361 Tautomerase enzyme HOO34_05285 PF00990 Diguanylate cyclase, GGDEF domain HOO34_05295 PF01551 Peptidase family M23 HOO34_05295 PF04225 Opacity-associated protein A LysM-like domain HOO34_05305 PF12848 ABC transporter HOO34_05305 PF00005 ABC transporter HOO34_05305 PF16326 ABC transporter C-terminal domain HOO34_05310 PF02132 RecR protein HOO34_05310 PF13662 Toprim domain HOO34_05330 PF00248 Aldo/keto reductase family HOO34_05335 PF02416 mttA/Hcf106 family HOO34_05340 PF00902 Sec-independent protein translocase protein (TatC) HOO34_05345 PF02547 Queuosine biosynthesis protein HOO34_05350 PF13307 Helicase C-terminal domain HOO34_05350 PF00929 Exonuclease HOO34_05355 PF05099 Tellurite resistance protein TerB HOO34_05355 PF00226 DnaJ domain HOO34_05370 PF02540 NAD synthase HOO34_05375 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HOO34_05380 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HOO34_05385 PF03741 Integral membrane protein TerC family HOO34_05390 PF13411 MerR HTH family regulatory protein HOO34_05395 PF01556 DnaJ C terminal domain HOO34_05395 PF00226 DnaJ domain HOO34_05400 PF00989 PAS fold HOO34_05400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_05400 PF00512 His Kinase A (phospho-acceptor) domain HOO34_05400 PF08447 PAS fold HOO34_05410 PF00072 Response regulator receiver domain HOO34_05430 PF00216 Bacterial DNA-binding protein HOO34_05440 PF01795 MraW methylase family HOO34_05470 PF00056 lactate/malate dehydrogenase, NAD binding domain HOO34_05470 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HOO34_05475 PF03971 Monomeric isocitrate dehydrogenase HOO34_05480 PF02618 YceG-like family HOO34_05495 PF00488 MutS domain V HOO34_05495 PF01713 Smr domain HOO34_05500 PF03471 Transporter associated domain HOO34_05500 PF00571 CBS domain HOO34_05500 PF01595 Cyclin M transmembrane N-terminal domain HOO34_05515 PF00005 ABC transporter HOO34_05520 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain HOO34_05520 PF01113 Dihydrodipicolinate reductase, N-terminus HOO34_05525 PF03473 MOSC domain HOO34_05535 PF06969 HemN C-terminal domain HOO34_05535 PF04055 Radical SAM superfamily HOO34_05540 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HOO34_05540 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HOO34_05545 PF00317 Ribonucleotide reductase, all-alpha domain HOO34_05545 PF03477 ATP cone domain HOO34_05545 PF02867 Ribonucleotide reductase, barrel domain HOO34_05565 PF00809 Pterin binding enzyme HOO34_05580 PF13840 ACT domain HOO34_05580 PF01842 ACT domain HOO34_05580 PF00696 Amino acid kinase family HOO34_05585 PF00293 NUDIX domain HOO34_05600 PF01432 Peptidase family M3 HOO34_05645 PF02463 RecF/RecN/SMC N terminal domain HOO34_05760 PF14659 Phage integrase, N-terminal SAM-like domain HOO34_05760 PF00589 Phage integrase family HOO34_05765 PF03061 Thioesterase superfamily HOO34_05770 PF13091 PLD-like domain HOO34_05775 PF01435 Peptidase family M48 HOO34_05775 PF16491 CAAX prenyl protease N-terminal, five membrane helices HOO34_05780 PF02646 RmuC family HOO34_05785 PF04228 Putative neutral zinc metallopeptidase HOO34_05795 PF00994 Probable molybdopterin binding domain HOO34_05795 PF03454 MoeA C-terminal region (domain IV) HOO34_05795 PF03453 MoeA N-terminal region (domain I and II) HOO34_05805 PF01171 PP-loop family HOO34_05825 PF01066 CDP-alcohol phosphatidyltransferase HOO34_05840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HOO34_05840 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HOO34_05840 PF00205 Thiamine pyrophosphate enzyme, central domain HOO34_05845 PF10369 Small subunit of acetolactate synthase HOO34_05850 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HOO34_05850 PF00132 Bacterial transferase hexapeptide (six repeats) HOO34_05855 PF09397 Ftsk gamma domain HOO34_05855 PF01580 FtsK/SpoIIIE family HOO34_05855 PF17854 FtsK alpha domain HOO34_05875 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus HOO34_05875 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HOO34_05880 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HOO34_05880 PF01926 50S ribosome-binding GTPase HOO34_05885 PF01740 STAS domain HOO34_05885 PF00916 Sulfate permease family HOO34_05895 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HOO34_05895 PF02844 Phosphoribosylglycinamide synthetase, N domain HOO34_05895 PF02843 Phosphoribosylglycinamide synthetase, C domain HOO34_05905 PF03968 OstA-like protein HOO34_05905 PF04453 LPS transport system D HOO34_05915 PF00013 KH domain HOO34_05915 PF01138 3' exoribonuclease family, domain 1 HOO34_05915 PF03725 3' exoribonuclease family, domain 2 HOO34_05915 PF00575 S1 RNA binding domain HOO34_05915 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HOO34_05920 PF00072 Response regulator receiver domain HOO34_05925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_05925 PF01627 Hpt domain HOO34_05925 PF01584 CheW-like domain HOO34_05925 PF02895 Signal transducing histidine kinase, homodimeric domain HOO34_05925 PF09078 CheY binding HOO34_05930 PF01739 CheR methyltransferase, SAM binding domain HOO34_05930 PF03705 CheR methyltransferase, all-alpha domain HOO34_05935 PF03975 CheD chemotactic sensory transduction HOO34_05940 PF01339 CheB methylesterase HOO34_05940 PF00072 Response regulator receiver domain HOO34_05945 PF00589 Phage integrase family HOO34_05945 PF18644 Phage integrase SAM-like domain HOO34_05950 PF00684 DnaJ central domain HOO34_05950 PF01556 DnaJ C terminal domain HOO34_05950 PF00226 DnaJ domain HOO34_05975 PF00753 Metallo-beta-lactamase superfamily HOO34_05990 PF08003 Protein of unknown function (DUF1698) HOO34_05995 PF00072 Response regulator receiver domain HOO34_05995 PF00990 Diguanylate cyclase, GGDEF domain HOO34_06005 PF05140 ResB-like family HOO34_06005 PF01578 Cytochrome C assembly protein HOO34_06015 PF07730 Histidine kinase HOO34_06015 PF17200 Single Cache domain 2 HOO34_06025 PF03548 Outer membrane lipoprotein carrier protein LolA HOO34_06030 PF01043 SecA preprotein cross-linking domain HOO34_06030 PF07517 SecA DEAD-like domain HOO34_06030 PF02810 SEC-C motif HOO34_06030 PF00271 Helicase conserved C-terminal domain HOO34_06030 PF07516 SecA Wing and Scaffold domain HOO34_06035 PF12704 MacB-like periplasmic core domain HOO34_06035 PF02687 FtsX-like permease family HOO34_06040 PF00994 Probable molybdopterin binding domain HOO34_06050 PF00004 ATPase family associated with various cellular activities (AAA) HOO34_06050 PF01434 Peptidase family M41 HOO34_06050 PF06480 FtsH Extracellular HOO34_06050 PF17862 AAA+ lid domain HOO34_06055 PF04055 Radical SAM superfamily HOO34_06055 PF00919 Uncharacterized protein family UPF0004 HOO34_06070 PF01761 3-dehydroquinate synthase HOO34_06100 PF01497 Periplasmic binding protein HOO34_06110 PF07715 TonB-dependent Receptor Plug Domain HOO34_06110 PF00593 TonB dependent receptor HOO34_06130 PF13419 Haloacid dehalogenase-like hydrolase HOO34_06135 PF00849 RNA pseudouridylate synthase HOO34_06135 PF01479 S4 domain HOO34_06140 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HOO34_06150 PF08534 Redoxin HOO34_06165 PF02600 Disulfide bond formation protein DsbB HOO34_06175 PF00512 His Kinase A (phospho-acceptor) domain HOO34_06175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_06175 PF00497 Bacterial extracellular solute-binding proteins, family 3 HOO34_06185 PF00999 Sodium/hydrogen exchanger family HOO34_06185 PF02254 TrkA-N domain HOO34_06200 PF00155 Aminotransferase class I and II HOO34_06215 PF00890 FAD binding domain HOO34_06215 PF02910 Fumarate reductase flavoprotein C-term HOO34_06220 PF00117 Glutamine amidotransferase class-I HOO34_06220 PF00958 GMP synthase C terminal domain HOO34_06220 PF02540 NAD synthase HOO34_06225 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system HOO34_06235 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HOO34_06250 PF00561 alpha/beta hydrolase fold HOO34_06265 PF00563 EAL domain HOO34_06265 PF00990 Diguanylate cyclase, GGDEF domain HOO34_06265 PF08448 PAS fold HOO34_06270 PF17755 UvrA DNA-binding domain HOO34_06270 PF17760 UvrA interaction domain HOO34_06270 PF00005 ABC transporter HOO34_06275 PF01118 Semialdehyde dehydrogenase, NAD binding domain HOO34_06290 PF02384 N-6 DNA Methylase HOO34_06290 PF12161 HsdM N-terminal domain HOO34_06295 PF02661 Fic/DOC family HOO34_06295 PF13784 Fic/DOC family N-terminal HOO34_06310 PF13700 Domain of unknown function (DUF4158) HOO34_06310 PF01526 Tn3 transposase DDE domain HOO34_06320 PF02796 Helix-turn-helix domain of resolvase HOO34_06320 PF00239 Resolvase, N terminal domain HOO34_06325 PF04851 Type III restriction enzyme, res subunit HOO34_06325 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) HOO34_06325 PF00271 Helicase conserved C-terminal domain HOO34_06325 PF08463 EcoEI R protein C-terminal HOO34_06330 PF00875 DNA photolyase HOO34_06330 PF03441 FAD binding domain of DNA photolyase HOO34_06335 PF01370 NAD dependent epimerase/dehydratase family HOO34_06335 PF08338 Domain of unknown function (DUF1731) HOO34_06345 PF08212 Lipocalin-like domain HOO34_06350 PF00762 Ferrochelatase HOO34_06380 PF12792 CSS motif domain associated with EAL HOO34_06380 PF00563 EAL domain HOO34_06390 PF06580 Histidine kinase HOO34_06390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_06390 PF13492 GAF domain HOO34_06390 PF07694 5TMR of 5TMR-LYT HOO34_06410 PF01699 Sodium/calcium exchanger protein HOO34_06415 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HOO34_06415 PF00476 DNA polymerase family A HOO34_06415 PF01367 5'-3' exonuclease, C-terminal SAM fold HOO34_06420 PF18073 Rubredoxin metal binding domain HOO34_06430 PF02130 Uncharacterized protein family UPF0054 HOO34_06435 PF01475 Ferric uptake regulator family HOO34_06445 PF03023 Lipid II flippase MurJ HOO34_06450 PF00664 ABC transporter transmembrane region HOO34_06450 PF00005 ABC transporter HOO34_06455 PF01180 Dihydroorotate dehydrogenase HOO34_06460 PF00675 Insulinase (Peptidase family M16) HOO34_06460 PF05193 Peptidase M16 inactive domain HOO34_06465 PF00701 Dihydrodipicolinate synthetase family HOO34_06475 PF01066 CDP-alcohol phosphatidyltransferase HOO34_06480 PF17820 PDZ domain HOO34_06480 PF02163 Peptidase family M50 HOO34_06485 PF01168 Alanine racemase, N-terminal domain HOO34_06490 PF00672 HAMP domain HOO34_06490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_06490 PF02203 Tar ligand binding domain homologue HOO34_06495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_06495 PF08447 PAS fold HOO34_06505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_06510 PF00486 Transcriptional regulatory protein, C terminal HOO34_06510 PF00072 Response regulator receiver domain HOO34_06520 PF00005 ABC transporter HOO34_06520 PF00664 ABC transporter transmembrane region HOO34_06525 PF01709 Transcriptional regulator HOO34_06545 PF03641 Possible lysine decarboxylase HOO34_06550 PF13419 Haloacid dehalogenase-like hydrolase HOO34_06570 PF02581 Thiamine monophosphate synthase HOO34_06570 PF08543 Phosphomethylpyrimidine kinase HOO34_06575 PF00171 Aldehyde dehydrogenase family HOO34_06595 PF00795 Carbon-nitrogen hydrolase HOO34_06605 PF13193 AMP-binding enzyme C-terminal domain HOO34_06605 PF00501 AMP-binding enzyme HOO34_06610 PF03062 MBOAT, membrane-bound O-acyltransferase family HOO34_06625 PF00550 Phosphopantetheine attachment site HOO34_06630 PF00132 Bacterial transferase hexapeptide (six repeats) HOO34_06700 PF00512 His Kinase A (phospho-acceptor) domain HOO34_06700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_06700 PF00672 HAMP domain HOO34_06700 PF13426 PAS domain HOO34_06705 PF00486 Transcriptional regulatory protein, C terminal HOO34_06705 PF00072 Response regulator receiver domain HOO34_06725 PF05525 Branched-chain amino acid transport protein HOO34_06730 PF00588 SpoU rRNA Methylase family HOO34_06735 PF01842 ACT domain HOO34_06735 PF00551 Formyl transferase HOO34_06750 PF08501 Shikimate dehydrogenase substrate binding domain HOO34_06755 PF00196 Bacterial regulatory proteins, luxR family HOO34_06755 PF17874 MalT-like TPR region HOO34_06760 PF13533 Biotin-lipoyl like HOO34_06765 PF00005 ABC transporter HOO34_06765 PF00664 ABC transporter transmembrane region HOO34_06765 PF03412 Peptidase C39 family HOO34_06785 PF01389 OmpA-like transmembrane domain HOO34_06785 PF00691 OmpA family HOO34_06790 PF00271 Helicase conserved C-terminal domain HOO34_06790 PF00270 DEAD/DEAH box helicase HOO34_06800 PF03738 Glutathionylspermidine synthase preATP-grasp HOO34_06805 PF00149 Calcineurin-like phosphoesterase HOO34_06810 PF00672 HAMP domain HOO34_06810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_06810 PF02203 Tar ligand binding domain homologue HOO34_06815 PF03120 NAD-dependent DNA ligase OB-fold domain HOO34_06815 PF12826 Helix-hairpin-helix motif HOO34_06815 PF01653 NAD-dependent DNA ligase adenylation domain HOO34_06815 PF00533 BRCA1 C Terminus (BRCT) domain HOO34_06820 PF01653 NAD-dependent DNA ligase adenylation domain HOO34_06820 PF03120 NAD-dependent DNA ligase OB-fold domain HOO34_06820 PF12826 Helix-hairpin-helix motif HOO34_06820 PF00533 BRCA1 C Terminus (BRCT) domain HOO34_06825 PF00571 CBS domain HOO34_06825 PF00478 IMP dehydrogenase / GMP reductase domain HOO34_06830 PF01425 Amidase HOO34_06835 PF01196 Ribosomal protein L17 HOO34_06840 PF01000 RNA polymerase Rpb3/RpoA insert domain HOO34_06840 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HOO34_06840 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HOO34_06845 PF01479 S4 domain HOO34_06845 PF00163 Ribosomal protein S4/S9 N-terminal domain HOO34_06850 PF00411 Ribosomal protein S11 HOO34_06855 PF00416 Ribosomal protein S13/S18 HOO34_06860 PF00444 Ribosomal protein L36 HOO34_06875 PF00180 Isocitrate/isopropylmalate dehydrogenase HOO34_06880 PF00694 Aconitase C-terminal domain HOO34_06885 PF04545 Sigma-70, region 4 HOO34_06885 PF04542 Sigma-70 region 2 HOO34_06885 PF04539 Sigma-70 region 3 HOO34_06885 PF00140 Sigma-70 factor, region 1.2 HOO34_06890 PF02899 Phage integrase, N-terminal SAM-like domain HOO34_06890 PF00589 Phage integrase family HOO34_06990 PF08275 DNA primase catalytic core, N-terminal domain HOO34_06990 PF01807 CHC2 zinc finger HOO34_07060 PF17841 BID domain of Bartonella effector protein (Bep) HOO34_07060 PF02661 Fic/DOC family HOO34_07070 PF07804 HipA-like C-terminal domain HOO34_07070 PF13657 HipA N-terminal domain HOO34_07080 PF00665 Integrase core domain HOO34_07095 PF02092 Glycyl-tRNA synthetase beta subunit HOO34_07115 PF02527 rRNA small subunit methyltransferase G HOO34_07120 PF00925 GTP cyclohydrolase II HOO34_07125 PF00490 Delta-aminolevulinic acid dehydratase HOO34_07180 PF01695 IstB-like ATP binding protein HOO34_07190 PF00665 Integrase core domain HOO34_07200 PF12167 Arm DNA-binding domain HOO34_07200 PF00589 Phage integrase family HOO34_07230 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HOO34_07230 PF02142 MGS-like domain HOO34_07230 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HOO34_07245 PF00561 alpha/beta hydrolase fold HOO34_07260 PF12327 FtsZ family, C-terminal domain HOO34_07260 PF00091 Tubulin/FtsZ family, GTPase domain HOO34_07265 PF02491 SHS2 domain inserted in FTSA HOO34_07275 PF13538 UvrD-like helicase C-terminal domain HOO34_07275 PF14490 Helix-hairpin-helix containing domain HOO34_07275 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain HOO34_07285 PF00817 impB/mucB/samB family HOO34_07285 PF11799 impB/mucB/samB family C-terminal domain HOO34_07285 PF11798 IMS family HHH motif HOO34_07295 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding HOO34_07295 PF07992 Pyridine nucleotide-disulphide oxidoreductase HOO34_07295 PF10518 TAT (twin-arginine translocation) pathway signal sequence HOO34_07300 PF16326 ABC transporter C-terminal domain HOO34_07300 PF00005 ABC transporter HOO34_07300 PF12848 ABC transporter HOO34_07310 PF01555 DNA methylase HOO34_07310 PF18273 Type III R-M EcoP15I C-terminal domain HOO34_07345 PF04055 Radical SAM superfamily HOO34_07355 PF17831 Pyruvate dehydrogenase E1 component middle domain HOO34_07355 PF00456 Transketolase, thiamine diphosphate binding domain HOO34_07360 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HOO34_07360 PF02817 e3 binding domain HOO34_07360 PF00364 Biotin-requiring enzyme HOO34_07365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HOO34_07365 PF07992 Pyridine nucleotide-disulphide oxidoreductase HOO34_07370 PF00672 HAMP domain HOO34_07370 PF02203 Tar ligand binding domain homologue HOO34_07370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_07375 PF02151 UvrB/uvrC motif HOO34_07375 PF01541 GIY-YIG catalytic domain HOO34_07375 PF08459 UvrC Helix-hairpin-helix N-terminal HOO34_07380 PF00842 Alanine racemase, C-terminal domain HOO34_07380 PF01168 Alanine racemase, N-terminal domain HOO34_07385 PF02203 Tar ligand binding domain homologue HOO34_07385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_07385 PF00672 HAMP domain HOO34_07390 PF00465 Iron-containing alcohol dehydrogenase HOO34_07395 PF00155 Aminotransferase class I and II HOO34_07425 PF05191 Adenylate kinase, active site lid HOO34_07430 PF13722 5TM C-terminal transporter carbon starvation CstA HOO34_07430 PF02554 Carbon starvation protein CstA HOO34_07445 PF07715 TonB-dependent Receptor Plug Domain HOO34_07445 PF00593 TonB dependent receptor HOO34_07450 PF02371 Transposase IS116/IS110/IS902 family HOO34_07450 PF01548 Transposase HOO34_07455 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HOO34_07455 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HOO34_07460 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HOO34_07465 PF08334 Type II secretion system (T2SS), protein G HOO34_07465 PF07963 Prokaryotic N-terminal methylation motif HOO34_07470 PF00772 DnaB-like helicase N terminal domain HOO34_07470 PF03796 DnaB-like helicase C terminal domain HOO34_07475 PF04551 GcpE protein HOO34_07480 PF08447 PAS fold HOO34_07480 PF08448 PAS fold HOO34_07480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_07490 PF00152 tRNA synthetases class II (D, K and N) HOO34_07490 PF01336 OB-fold nucleic acid binding domain HOO34_07495 PF00464 Serine hydroxymethyltransferase HOO34_07505 PF04715 Anthranilate synthase component I, N terminal region HOO34_07505 PF00425 chorismate binding enzyme HOO34_07510 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HOO34_07515 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HOO34_07525 PF00990 Diguanylate cyclase, GGDEF domain HOO34_07525 PF17158 Membrane-associated sensor, integral membrane domain HOO34_07535 PF00990 Diguanylate cyclase, GGDEF domain HOO34_07535 PF00563 EAL domain HOO34_07535 PF03707 Bacterial signalling protein N terminal repeat HOO34_07535 PF13188 PAS domain HOO34_07540 PF00300 Histidine phosphatase superfamily (branch 1) HOO34_07560 PF02096 60Kd inner membrane protein HOO34_07560 PF14849 YidC periplasmic domain HOO34_07565 PF01809 Putative membrane protein insertion efficiency factor HOO34_07570 PF00825 Ribonuclease P HOO34_07575 PF00468 Ribosomal protein L34 HOO34_07580 PF00004 ATPase family associated with various cellular activities (AAA) HOO34_07580 PF07724 AAA domain (Cdc48 subfamily) HOO34_07580 PF17871 AAA lid domain HOO34_07580 PF02861 Clp amino terminal domain, pathogenicity island component HOO34_07580 PF10431 C-terminal, D2-small domain, of ClpB protein HOO34_07585 PF01351 Ribonuclease HII HOO34_07590 PF00005 ABC transporter HOO34_07590 PF02687 FtsX-like permease family HOO34_07590 PF12704 MacB-like periplasmic core domain HOO34_07595 PF02687 FtsX-like permease family HOO34_07595 PF00005 ABC transporter HOO34_07595 PF12704 MacB-like periplasmic core domain HOO34_07610 PF01618 MotA/TolQ/ExbB proton channel family HOO34_07615 PF02472 Biopolymer transport protein ExbD/TolR HOO34_07625 PF00990 Diguanylate cyclase, GGDEF domain HOO34_07635 PF07943 Penicillin-binding protein 5, C-terminal domain HOO34_07635 PF00768 D-alanyl-D-alanine carboxypeptidase HOO34_07640 PF00118 TCP-1/cpn60 chaperonin family HOO34_07645 PF00166 Chaperonin 10 Kd subunit HOO34_07650 PF00348 Polyprenyl synthetase HOO34_07655 PF02575 YbaB/EbfC DNA-binding family HOO34_07660 PF02261 Aspartate decarboxylase HOO34_07665 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HOO34_07670 PF01584 CheW-like domain HOO34_07675 PF13742 OB-fold nucleic acid binding domain HOO34_07675 PF02601 Exonuclease VII, large subunit HOO34_07695 PF13277 YmdB-like protein HOO34_07700 PF13426 PAS domain HOO34_07700 PF13188 PAS domain HOO34_07700 PF00989 PAS fold HOO34_07700 PF00512 His Kinase A (phospho-acceptor) domain HOO34_07700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_07705 PF13581 Histidine kinase-like ATPase domain HOO34_07705 PF07536 HWE histidine kinase HOO34_07705 PF13426 PAS domain HOO34_07715 PF00072 Response regulator receiver domain HOO34_07715 PF00158 Sigma-54 interaction domain HOO34_07715 PF02954 Bacterial regulatory protein, Fis family HOO34_07720 PF00672 HAMP domain HOO34_07720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_07720 PF02203 Tar ligand binding domain homologue HOO34_07735 PF00072 Response regulator receiver domain HOO34_07735 PF00486 Transcriptional regulatory protein, C terminal HOO34_07745 PF00990 Diguanylate cyclase, GGDEF domain HOO34_07745 PF00360 Phytochrome region HOO34_07745 PF00563 EAL domain HOO34_07745 PF01590 GAF domain HOO34_07755 PF00072 Response regulator receiver domain HOO34_07760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_07760 PF08447 PAS fold HOO34_07760 PF08448 PAS fold HOO34_07765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HOO34_07770 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HOO34_07775 PF03480 Bacterial extracellular solute-binding protein, family 7 HOO34_07780 PF00528 Binding-protein-dependent transport system inner membrane component HOO34_07785 PF00005 ABC transporter HOO34_07800 PF00137 ATP synthase subunit C HOO34_07825 PF04116 Fatty acid hydroxylase superfamily HOO34_07830 PF03150 Di-haem cytochrome c peroxidase HOO34_07835 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HOO34_07840 PF00905 Penicillin binding protein transpeptidase domain HOO34_07840 PF03717 Penicillin-binding Protein dimerisation domain HOO34_07840 PF03793 PASTA domain HOO34_07845 PF01098 Cell cycle protein HOO34_07850 PF03033 Glycosyltransferase family 28 N-terminal domain HOO34_07850 PF04101 Glycosyltransferase family 28 C-terminal domain HOO34_07855 PF02673 Bacitracin resistance protein BacA HOO34_07860 PF02621 Menaquinone biosynthesis HOO34_07870 PF02391 MoaE protein HOO34_07880 PF00120 Glutamine synthetase, catalytic domain HOO34_07880 PF03951 Glutamine synthetase, beta-Grasp domain HOO34_07885 PF00885 6,7-dimethyl-8-ribityllumazine synthase HOO34_07890 PF01029 NusB family HOO34_07895 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HOO34_07930 PF01820 D-ala D-ala ligase N-terminus HOO34_07930 PF07478 D-ala D-ala ligase C-terminus HOO34_07935 PF07499 RuvA, C-terminal domain HOO34_07935 PF01330 RuvA N terminal domain HOO34_07940 PF00672 HAMP domain HOO34_07940 PF02203 Tar ligand binding domain homologue HOO34_07940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_07950 PF01142 tRNA pseudouridine synthase D (TruD) HOO34_07955 PF02769 AIR synthase related protein, C-terminal domain HOO34_07955 PF00586 AIR synthase related protein, N-terminal domain HOO34_07960 PF00730 HhH-GPD superfamily base excision DNA repair protein HOO34_07960 PF10576 Iron-sulfur binding domain of endonuclease III HOO34_07960 PF00633 Helix-hairpin-helix motif HOO34_07980 PF08402 TOBE domain HOO34_07980 PF00005 ABC transporter HOO34_07985 PF00528 Binding-protein-dependent transport system inner membrane component HOO34_07990 PF13416 Bacterial extracellular solute-binding protein HOO34_07995 PF00117 Glutamine amidotransferase class-I HOO34_08035 PF00563 EAL domain HOO34_08035 PF00990 Diguanylate cyclase, GGDEF domain HOO34_08035 PF08448 PAS fold HOO34_08040 PF00625 Guanylate kinase HOO34_08050 PF00005 ABC transporter HOO34_08055 PF00889 Elongation factor TS HOO34_08060 PF00318 Ribosomal protein S2 HOO34_08080 PF00133 tRNA synthetases class I (I, L, M and V) HOO34_08080 PF08264 Anticodon-binding domain of tRNA HOO34_08085 PF06039 Malate:quinone oxidoreductase (Mqo) HOO34_08090 PF00994 Probable molybdopterin binding domain HOO34_08090 PF18146 Damage-inducible protein CinA KH domain HOO34_08090 PF02464 Competence-damaged protein HOO34_08135 PF00512 His Kinase A (phospho-acceptor) domain HOO34_08135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_08150 PF00474 Sodium:solute symporter family HOO34_08160 PF11490 DNA polymerase III polC-type N-terminus II HOO34_08160 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HOO34_08160 PF02811 PHP domain HOO34_08160 PF00929 Exonuclease HOO34_08160 PF07733 Bacterial DNA polymerase III alpha NTPase domain HOO34_08160 PF14579 Helix-hairpin-helix motif HOO34_08170 PF00474 Sodium:solute symporter family HOO34_08180 PF00474 Sodium:solute symporter family HOO34_08200 PF00871 Acetokinase family HOO34_08205 PF01515 Phosphate acetyl/butaryl transferase HOO34_08210 PF00871 Acetokinase family HOO34_08215 PF01343 Peptidase family S49 HOO34_08220 PF01979 Amidohydrolase family HOO34_08225 PF01220 Dehydroquinase class II HOO34_08230 PF01321 Creatinase/Prolidase N-terminal domain HOO34_08230 PF00557 Metallopeptidase family M24 HOO34_08235 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HOO34_08255 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HOO34_08255 PF14572 Phosphoribosyl synthetase-associated domain HOO34_08260 PF00691 OmpA family HOO34_08260 PF05736 OprF membrane domain HOO34_08265 PF03144 Elongation factor Tu domain 2 HOO34_08265 PF00009 Elongation factor Tu GTP binding domain HOO34_08265 PF00679 Elongation factor G C-terminus HOO34_08265 PF06421 GTP-binding protein LepA C-terminus HOO34_08280 PF16226 Domain of unknown function (DUF4885) HOO34_08315 PF00117 Glutamine amidotransferase class-I HOO34_08320 PF00977 Histidine biosynthesis protein HOO34_08325 PF07694 5TMR of 5TMR-LYT HOO34_08325 PF00990 Diguanylate cyclase, GGDEF domain HOO34_08335 PF01914 MarC family integral membrane protein HOO34_08340 PF05192 MutS domain III HOO34_08340 PF05190 MutS family domain IV HOO34_08340 PF00488 MutS domain V HOO34_08340 PF05188 MutS domain II HOO34_08340 PF01624 MutS domain I HOO34_08355 PF00682 HMGL-like HOO34_08355 PF08502 LeuA allosteric (dimerisation) domain HOO34_08365 PF17862 AAA+ lid domain HOO34_08365 PF01434 Peptidase family M41 HOO34_08365 PF00004 ATPase family associated with various cellular activities (AAA) HOO34_08375 PF01207 Dihydrouridine synthase (Dus) HOO34_08385 PF02590 Predicted SPOUT methyltransferase HOO34_08390 PF02581 Thiamine monophosphate synthase HOO34_08395 PF01039 Carboxyl transferase domain HOO34_08395 PF17848 Acetyl-coA carboxylase zinc finger domain HOO34_08400 PF02773 S-adenosylmethionine synthetase, C-terminal domain HOO34_08400 PF02772 S-adenosylmethionine synthetase, central domain HOO34_08400 PF00438 S-adenosylmethionine synthetase, N-terminal domain HOO34_08415 PF01380 SIS domain HOO34_08420 PF00459 Inositol monophosphatase family HOO34_08430 PF00672 HAMP domain HOO34_08430 PF02203 Tar ligand binding domain homologue HOO34_08430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_08470 PF00883 Cytosol aminopeptidase family, catalytic domain HOO34_08470 PF02789 Cytosol aminopeptidase family, N-terminal domain HOO34_08480 PF00291 Pyridoxal-phosphate dependent enzyme HOO34_08485 PF00156 Phosphoribosyl transferase domain HOO34_08490 PF01068 ATP dependent DNA ligase domain HOO34_08490 PF14743 DNA ligase OB-like domain HOO34_08500 PF01053 Cys/Met metabolism PLP-dependent enzyme HOO34_08505 PF01053 Cys/Met metabolism PLP-dependent enzyme HOO34_08520 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HOO34_08535 PF00072 Response regulator receiver domain HOO34_08535 PF00486 Transcriptional regulatory protein, C terminal HOO34_08560 PF13244 Domain of unknown function (DUF4040) HOO34_08560 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HOO34_08560 PF00361 Proton-conducting membrane transporter HOO34_08560 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HOO34_08565 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HOO34_08570 PF00361 Proton-conducting membrane transporter HOO34_08575 PF01899 Na+/H+ ion antiporter subunit HOO34_08580 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HOO34_08585 PF03334 Na+/H+ antiporter subunit HOO34_08590 PF00696 Amino acid kinase family HOO34_08595 PF01192 RNA polymerase Rpb6 HOO34_08600 PF13291 ACT domain HOO34_08600 PF02824 TGS domain HOO34_08600 PF04607 Region found in RelA / SpoT proteins HOO34_08605 PF00579 tRNA synthetases class I (W and Y) HOO34_08605 PF01479 S4 domain HOO34_08615 PF01520 N-acetylmuramoyl-L-alanine amidase HOO34_08630 PF01195 Peptidyl-tRNA hydrolase HOO34_08635 PF14693 Ribosomal protein TL5, C-terminal domain HOO34_08635 PF01386 Ribosomal L25p family HOO34_08640 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HOO34_08640 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HOO34_08645 PF10502 Signal peptidase, peptidase S26 HOO34_08650 PF02502 Ribose/Galactose Isomerase HOO34_08695 PF08495 FIST N domain HOO34_08695 PF00563 EAL domain HOO34_08695 PF10442 FIST C domain HOO34_08695 PF00990 Diguanylate cyclase, GGDEF domain HOO34_08700 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HOO34_08700 PF01243 Pyridoxamine 5'-phosphate oxidase HOO34_08710 PF00990 Diguanylate cyclase, GGDEF domain HOO34_08710 PF03707 Bacterial signalling protein N terminal repeat HOO34_08710 PF00563 EAL domain HOO34_08715 PF00270 DEAD/DEAH box helicase HOO34_08715 PF03880 DbpA RNA binding domain HOO34_08715 PF00271 Helicase conserved C-terminal domain HOO34_08735 PF00183 Hsp90 protein HOO34_08745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HOO34_08745 PF01627 Hpt domain HOO34_08745 PF00512 His Kinase A (phospho-acceptor) domain HOO34_08745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_08745 PF00672 HAMP domain HOO34_08745 PF00072 Response regulator receiver domain HOO34_08755 PF00491 Arginase family HOO34_08765 PF04073 Aminoacyl-tRNA editing domain HOO34_08795 PF04403 Paraquat-inducible protein A HOO34_08800 PF02470 MlaD protein HOO34_08805 PF06628 Catalase-related immune-responsive HOO34_08805 PF00199 Catalase HOO34_08810 PF00023 Ankyrin repeat HOO34_08810 PF12796 Ankyrin repeats (3 copies) HOO34_08820 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HOO34_08820 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HOO34_08825 PF00682 HMGL-like HOO34_08825 PF08502 LeuA allosteric (dimerisation) domain HOO34_08830 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HOO34_08830 PF12833 Helix-turn-helix domain HOO34_08835 PF00924 Mechanosensitive ion channel HOO34_08840 PF02833 DHHA2 domain HOO34_08840 PF01368 DHH family HOO34_08850 PF10415 Fumarase C C-terminus HOO34_08850 PF00206 Lyase HOO34_08870 PF01048 Phosphorylase superfamily HOO34_08875 PF00698 Acyl transferase domain HOO34_08880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HOO34_08895 PF04052 TolB amino-terminal domain HOO34_08905 PF02472 Biopolymer transport protein ExbD/TolR HOO34_08910 PF01618 MotA/TolQ/ExbB proton channel family HOO34_08915 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HOO34_08920 PF02874 ATP synthase alpha/beta family, beta-barrel domain HOO34_08920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HOO34_08925 PF00231 ATP synthase HOO34_08930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HOO34_08930 PF00306 ATP synthase alpha/beta chain, C terminal domain HOO34_08930 PF02874 ATP synthase alpha/beta family, beta-barrel domain HOO34_08935 PF00213 ATP synthase delta (OSCP) subunit HOO34_08940 PF00430 ATP synthase B/B' CF(0) HOO34_08950 PF17762 HTH domain found in ParB protein HOO34_08950 PF02195 ParB-like nuclease domain HOO34_08955 PF13614 AAA domain HOO34_08970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_08970 PF08447 PAS fold HOO34_08975 PF00551 Formyl transferase HOO34_08975 PF02911 Formyl transferase, C-terminal domain HOO34_08980 PF00696 Amino acid kinase family HOO34_08985 PF01926 50S ribosome-binding GTPase HOO34_08985 PF01018 GTP1/OBG HOO34_08990 PF01016 Ribosomal L27 protein HOO34_08995 PF00829 Ribosomal prokaryotic L21 protein HOO34_09050 PF09179 TilS substrate binding domain HOO34_09050 PF01171 PP-loop family HOO34_09050 PF11734 TilS substrate C-terminal domain HOO34_09080 PF00589 Phage integrase family HOO34_09080 PF14659 Phage integrase, N-terminal SAM-like domain HOO34_09085 PF13662 Toprim domain HOO34_09085 PF16730 DnaG-primase C-terminal, helicase-binding domain HOO34_09085 PF08275 DNA primase catalytic core, N-terminal domain HOO34_09085 PF01807 CHC2 zinc finger HOO34_09095 PF14622 Ribonuclease-III-like HOO34_09095 PF00035 Double-stranded RNA binding motif HOO34_09100 PF01264 Chorismate synthase HOO34_09110 PF03976 Polyphosphate kinase 2 (PPK2) HOO34_09125 PF01625 Peptide methionine sulfoxide reductase HOO34_09135 PF00202 Aminotransferase class-III HOO34_09140 PF08447 PAS fold HOO34_09140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_09140 PF08448 PAS fold HOO34_09145 PF01808 AICARFT/IMPCHase bienzyme HOO34_09145 PF02142 MGS-like domain HOO34_09150 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HOO34_09150 PF02769 AIR synthase related protein, C-terminal domain HOO34_09150 PF00586 AIR synthase related protein, N-terminal domain HOO34_09160 PF01551 Peptidase family M23 HOO34_09160 PF10145 Phage-related minor tail protein HOO34_09160 PF01464 Transglycosylase SLT domain HOO34_09165 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HOO34_09165 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HOO34_09180 PF00575 S1 RNA binding domain HOO34_09180 PF17674 HHH domain HOO34_09180 PF09371 Tex-like protein N-terminal domain HOO34_09180 PF16921 Tex protein YqgF-like domain HOO34_09185 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HOO34_09190 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HOO34_09195 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HOO34_09200 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HOO34_09200 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HOO34_09210 PF10531 SLBB domain HOO34_09210 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HOO34_09210 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HOO34_09215 PF00285 Citrate synthase, C-terminal domain HOO34_09220 PF00384 Molybdopterin oxidoreductase HOO34_09220 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HOO34_09220 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal HOO34_09225 PF00146 NADH dehydrogenase HOO34_09230 PF12838 4Fe-4S dicluster domain HOO34_09235 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HOO34_09240 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HOO34_09245 PF00361 Proton-conducting membrane transporter HOO34_09245 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HOO34_09250 PF00361 Proton-conducting membrane transporter HOO34_09250 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus HOO34_09255 PF00361 Proton-conducting membrane transporter HOO34_09260 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HOO34_09265 PF00890 FAD binding domain HOO34_09265 PF02910 Fumarate reductase flavoprotein C-term HOO34_09270 PF13183 4Fe-4S dicluster domain HOO34_09270 PF13085 2Fe-2S iron-sulfur cluster binding domain HOO34_09280 PF00350 Dynamin family HOO34_09290 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HOO34_09290 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HOO34_09295 PF02504 Fatty acid synthesis protein HOO34_09300 PF01783 Ribosomal L32p protein family HOO34_09310 PF00334 Nucleoside diphosphate kinase HOO34_09320 PF00578 AhpC/TSA family HOO34_09320 PF10417 C-terminal domain of 1-Cys peroxiredoxin HOO34_09325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HOO34_09325 PF07498 Rho termination factor, N-terminal domain HOO34_09325 PF07497 Rho termination factor, RNA-binding domain HOO34_09330 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HOO34_09330 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HOO34_09335 PF01177 Asp/Glu/Hydantoin racemase HOO34_09340 PF12169 DNA polymerase III subunits gamma and tau domain III HOO34_09340 PF12170 DNA polymerase III tau subunit V interacting with alpha HOO34_09350 PF03900 Porphobilinogen deaminase, C-terminal domain HOO34_09350 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HOO34_09355 PF00857 Isochorismatase family HOO34_09380 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HOO34_09380 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HOO34_09395 PF00115 Cytochrome C and Quinol oxidase polypeptide I HOO34_09400 PF01668 SmpB protein HOO34_09405 PF00288 GHMP kinases N terminal domain HOO34_09410 PF01509 TruB family pseudouridylate synthase (N terminal domain) HOO34_09415 PF13361 UvrD-like helicase C-terminal domain HOO34_09415 PF00580 UvrD/REP helicase N-terminal domain HOO34_09420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HOO34_09420 PF03466 LysR substrate binding domain HOO34_09425 PF16199 Radical_SAM C-terminal domain HOO34_09425 PF04055 Radical SAM superfamily HOO34_09430 PF00156 Phosphoribosyl transferase domain HOO34_09430 PF13537 Glutamine amidotransferase domain HOO34_09435 PF01113 Dihydrodipicolinate reductase, N-terminus HOO34_09435 PF05173 Dihydrodipicolinate reductase, C-terminus HOO34_09440 PF07992 Pyridine nucleotide-disulphide oxidoreductase HOO34_09445 PF00085 Thioredoxin HOO34_09450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HOO34_09450 PF01411 tRNA synthetases class II (A) HOO34_09450 PF02272 DHHA1 domain HOO34_09480 PF00072 Response regulator receiver domain HOO34_09480 PF00486 Transcriptional regulatory protein, C terminal HOO34_09485 PF13180 PDZ domain HOO34_09485 PF17820 PDZ domain HOO34_09490 PF00920 Dehydratase family HOO34_09520 PF00005 ABC transporter HOO34_09520 PF09383 NIL domain HOO34_09540 PF01142 tRNA pseudouridine synthase D (TruD) HOO34_09555 PF13180 PDZ domain HOO34_09555 PF03572 Peptidase family S41 HOO34_09560 PF01259 SAICAR synthetase HOO34_09565 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase HOO34_09580 PF01553 Acyltransferase HOO34_09585 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HOO34_09590 PF02416 mttA/Hcf106 family HOO34_09595 PF02416 mttA/Hcf106 family HOO34_09600 PF00750 tRNA synthetases class I (R) HOO34_09600 PF03485 Arginyl tRNA synthetase N terminal domain HOO34_09600 PF05746 DALR anticodon binding domain HOO34_09610 PF01467 Cytidylyltransferase-like HOO34_09635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HOO34_09635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HOO34_09640 PF00162 Phosphoglycerate kinase HOO34_09645 PF00121 Triosephosphate isomerase HOO34_09655 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HOO34_09655 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HOO34_09660 PF01842 ACT domain HOO34_09660 PF00800 Prephenate dehydratase HOO34_09660 PF01817 Chorismate mutase type II HOO34_09665 PF00155 Aminotransferase class I and II HOO34_09670 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HOO34_09670 PF02780 Transketolase, C-terminal domain HOO34_09670 PF02779 Transketolase, pyrimidine binding domain HOO34_09675 PF00034 Cytochrome c HOO34_09675 PF03150 Di-haem cytochrome c peroxidase HOO34_09685 PF02545 Maf-like protein HOO34_09695 PF00877 NlpC/P60 family HOO34_09705 PF00939 Sodium:sulfate symporter transmembrane region HOO34_09715 PF00085 Thioredoxin HOO34_09715 PF02683 Cytochrome C biogenesis protein transmembrane region HOO34_09715 PF11412 Disulphide bond corrector protein DsbC HOO34_09720 PF18030 RimK PreATP-grasp domain HOO34_09720 PF08443 RimK-like ATP-grasp domain HOO34_09735 PF00563 EAL domain HOO34_09735 PF10442 FIST C domain HOO34_09735 PF08495 FIST N domain HOO34_09735 PF00990 Diguanylate cyclase, GGDEF domain HOO34_09740 PF02666 Phosphatidylserine decarboxylase HOO34_09800 PF04055 Radical SAM superfamily HOO34_09810 PF00484 Carbonic anhydrase HOO34_09815 PF00155 Aminotransferase class I and II HOO34_09820 PF02021 Uncharacterised protein family UPF0102 HOO34_09830 PF00224 Pyruvate kinase, barrel domain HOO34_09830 PF00391 PEP-utilising enzyme, mobile domain HOO34_09830 PF02887 Pyruvate kinase, alpha/beta domain HOO34_09840 PF00512 His Kinase A (phospho-acceptor) domain HOO34_09840 PF13426 PAS domain HOO34_09840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_09840 PF00672 HAMP domain HOO34_09845 PF00486 Transcriptional regulatory protein, C terminal HOO34_09845 PF00072 Response regulator receiver domain HOO34_09855 PF02561 Flagellar protein FliS HOO34_09860 PF07196 Flagellin hook IN motif HOO34_09860 PF02465 Flagellar hook-associated protein 2 N-terminus HOO34_09860 PF07195 Flagellar hook-associated protein 2 C-terminus HOO34_09870 PF02107 Flagellar L-ring protein HOO34_09895 PF01313 Bacterial export proteins, family 3 HOO34_09905 PF02119 Flagellar P-ring protein HOO34_09910 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HOO34_09910 PF02154 Flagellar motor switch protein FliM HOO34_09920 PF00543 Nitrogen regulatory protein P-II HOO34_09925 PF00909 Ammonium Transporter Family HOO34_09930 PF12796 Ankyrin repeats (3 copies) HOO34_09930 PF13606 Ankyrin repeat HOO34_09935 PF08335 GlnD PII-uridylyltransferase HOO34_09935 PF01966 HD domain HOO34_09945 PF02040 Arsenical pump membrane protein HOO34_09970 PF01451 Low molecular weight phosphotyrosine protein phosphatase HOO34_09980 PF02780 Transketolase, C-terminal domain HOO34_09980 PF00456 Transketolase, thiamine diphosphate binding domain HOO34_09980 PF02779 Transketolase, pyrimidine binding domain HOO34_09990 PF02371 Transposase IS116/IS110/IS902 family HOO34_09990 PF01548 Transposase HOO34_09995 PF08447 PAS fold HOO34_09995 PF08448 PAS fold HOO34_09995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_10000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_10000 PF02203 Tar ligand binding domain homologue HOO34_10000 PF00672 HAMP domain HOO34_10020 PF00682 HMGL-like HOO34_10020 PF02436 Conserved carboxylase domain HOO34_10050 PF05690 Thiazole biosynthesis protein ThiG HOO34_10055 PF03091 CutA1 divalent ion tolerance protein HOO34_10060 PF03853 YjeF-related protein N-terminus HOO34_10060 PF01256 Carbohydrate kinase HOO34_10070 PF00814 Glycoprotease family HOO34_10085 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HOO34_10085 PF13288 DXP reductoisomerase C-terminal domain HOO34_10085 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HOO34_10115 PF03129 Anticodon binding domain HOO34_10115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HOO34_10115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HOO34_10120 PF00707 Translation initiation factor IF-3, C-terminal domain HOO34_10120 PF05198 Translation initiation factor IF-3, N-terminal domain HOO34_10125 PF01632 Ribosomal protein L35 HOO34_10130 PF00453 Ribosomal protein L20 HOO34_10140 PF07992 Pyridine nucleotide-disulphide oxidoreductase HOO34_10150 PF00330 Aconitase family (aconitate hydratase) HOO34_10155 PF03960 ArsC family HOO34_10160 PF04303 PrpF protein HOO34_10165 PF00694 Aconitase C-terminal domain HOO34_10165 PF00330 Aconitase family (aconitate hydratase) HOO34_10170 PF00285 Citrate synthase, C-terminal domain HOO34_10185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HOO34_10185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HOO34_10190 PF01474 Class-II DAHP synthetase family HOO34_10195 PF00923 Transaldolase/Fructose-6-phosphate aldolase HOO34_10210 PF03652 Holliday junction resolvase HOO34_10215 PF03616 Sodium/glutamate symporter HOO34_10230 PF01648 4'-phosphopantetheinyl transferase superfamily HOO34_10235 PF00528 Binding-protein-dependent transport system inner membrane component HOO34_10240 PF02569 Pantoate-beta-alanine ligase HOO34_10250 PF04055 Radical SAM superfamily HOO34_10250 PF18693 TRAM domain HOO34_10250 PF00919 Uncharacterized protein family UPF0004 HOO34_10255 PF01171 PP-loop family HOO34_10270 PF17969 L,D-transpeptidase C-terminal domain HOO34_10270 PF03734 L,D-transpeptidase catalytic domain HOO34_10280 PF03831 PhnA domain HOO34_10280 PF08274 PhnA Zinc-Ribbon HOO34_10285 PF12849 PBP superfamily domain HOO34_10290 PF00563 EAL domain HOO34_10290 PF12792 CSS motif domain associated with EAL HOO34_10295 PF00528 Binding-protein-dependent transport system inner membrane component HOO34_10300 PF00528 Binding-protein-dependent transport system inner membrane component HOO34_10305 PF00005 ABC transporter HOO34_10310 PF01895 PhoU domain HOO34_10320 PF00072 Response regulator receiver domain HOO34_10320 PF00486 Transcriptional regulatory protein, C terminal HOO34_10330 PF00572 Ribosomal protein L13 HOO34_10335 PF00380 Ribosomal protein S9/S16 HOO34_10340 PF03070 TENA/THI-4/PQQC family HOO34_10345 PF02110 Hydroxyethylthiazole kinase family HOO34_10350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HOO34_10355 PF13419 Haloacid dehalogenase-like hydrolase HOO34_10375 PF00005 ABC transporter HOO34_10375 PF09383 NIL domain HOO34_10380 PF02405 Permease MlaE HOO34_10385 PF02664 S-Ribosylhomocysteinase (LuxS) HOO34_10390 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HOO34_10390 PF01266 FAD dependent oxidoreductase HOO34_10395 PF07943 Penicillin-binding protein 5, C-terminal domain HOO34_10395 PF00768 D-alanyl-D-alanine carboxypeptidase HOO34_10405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_10405 PF13426 PAS domain HOO34_10405 PF00512 His Kinase A (phospho-acceptor) domain HOO34_10405 PF13188 PAS domain HOO34_10405 PF00989 PAS fold HOO34_10410 PF02965 Vitamin B12 dependent methionine synthase, activation domain HOO34_10410 PF02310 B12 binding domain HOO34_10410 PF02607 B12 binding domain HOO34_10410 PF00809 Pterin binding enzyme HOO34_10410 PF02574 Homocysteine S-methyltransferase HOO34_10420 PF01063 Amino-transferase class IV HOO34_10435 PF01502 Phosphoribosyl-AMP cyclohydrolase HOO34_10435 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HOO34_10450 PF00583 Acetyltransferase (GNAT) family HOO34_10455 PF00202 Aminotransferase class-III HOO34_10460 PF06339 Ectoine synthase HOO34_10465 PF01883 Iron-sulfur cluster assembly protein HOO34_10465 PF10609 NUBPL iron-transfer P-loop NTPase HOO34_10470 PF01964 Radical SAM ThiC family HOO34_10480 PF02542 YgbB family HOO34_10480 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HOO34_10490 PF04608 Phosphatidylglycerophosphatase A HOO34_10495 PF00472 RF-1 domain HOO34_10495 PF03462 PCRF domain HOO34_10500 PF01649 Ribosomal protein S20 HOO34_10505 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HOO34_10505 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HOO34_10505 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HOO34_10505 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HOO34_10510 PF01252 Signal peptidase (SPase) II HOO34_10515 PF00202 Aminotransferase class-III HOO34_10525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HOO34_10525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HOO34_10530 PF00425 chorismate binding enzyme HOO34_10535 PF01063 Amino-transferase class IV HOO34_10540 PF00117 Glutamine amidotransferase class-I HOO34_10540 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HOO34_10550 PF00709 Adenylosuccinate synthetase HOO34_10555 PF13393 Histidyl-tRNA synthetase HOO34_10560 PF00266 Aminotransferase class-V HOO34_10585 PF17954 Quercetinase C-terminal cupin domain HOO34_10585 PF02678 Pirin HOO34_10600 PF09962 Uncharacterized conserved protein (DUF2196) HOO34_10605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HOO34_10605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HOO34_10610 PF02769 AIR synthase related protein, C-terminal domain HOO34_10610 PF00586 AIR synthase related protein, N-terminal domain HOO34_10615 PF17284 Spermidine synthase tetramerisation domain HOO34_10620 PF01121 Dephospho-CoA kinase HOO34_10635 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HOO34_10635 PF13746 4Fe-4S dicluster domain HOO34_10635 PF12801 4Fe-4S binding domain HOO34_10640 PF00117 Glutamine amidotransferase class-I HOO34_10640 PF06418 CTP synthase N-terminus HOO34_10645 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HOO34_10645 PF01368 DHH family HOO34_10645 PF02272 DHHA1 domain HOO34_10645 PF17768 RecJ OB domain HOO34_10660 PF01965 DJ-1/PfpI family HOO34_10665 PF07733 Bacterial DNA polymerase III alpha NTPase domain HOO34_10665 PF02811 PHP domain HOO34_10665 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HOO34_10665 PF14579 Helix-hairpin-helix motif HOO34_10670 PF01975 Survival protein SurE HOO34_10685 PF01967 MoaC family HOO34_10690 PF01165 Ribosomal protein S21 HOO34_10700 PF02661 Fic/DOC family HOO34_10750 PF07669 Eco57I restriction-modification methylase HOO34_10785 PF01040 UbiA prenyltransferase family HOO34_10800 PF01197 Ribosomal protein L31 HOO34_10805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HOO34_10810 PF00588 SpoU rRNA Methylase family HOO34_10810 PF08032 RNA 2'-O ribose methyltransferase substrate binding HOO34_10820 PF00155 Aminotransferase class I and II HOO34_10825 PF03447 Homoserine dehydrogenase, NAD binding domain HOO34_10825 PF00742 Homoserine dehydrogenase HOO34_10825 PF01842 ACT domain HOO34_10830 PF00270 DEAD/DEAH box helicase HOO34_10830 PF00271 Helicase conserved C-terminal domain HOO34_10835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HOO34_10835 PF00289 Biotin carboxylase, N-terminal domain HOO34_10835 PF02785 Biotin carboxylase C-terminal domain HOO34_10840 PF00364 Biotin-requiring enzyme HOO34_10845 PF01872 RibD C-terminal domain HOO34_10845 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HOO34_10855 PF02637 GatB domain HOO34_10855 PF02934 GatB/GatE catalytic domain HOO34_10860 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HOO34_10860 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HOO34_10865 PF08240 Alcohol dehydrogenase GroES-like domain HOO34_10865 PF00107 Zinc-binding dehydrogenase HOO34_10880 PF00486 Transcriptional regulatory protein, C terminal HOO34_10880 PF00072 Response regulator receiver domain HOO34_10885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_10885 PF08447 PAS fold HOO34_10885 PF08448 PAS fold HOO34_10895 PF00593 TonB dependent receptor HOO34_10895 PF07715 TonB-dependent Receptor Plug Domain HOO34_10905 PF05736 OprF membrane domain HOO34_10905 PF00691 OmpA family HOO34_10910 PF00268 Ribonucleotide reductase, small chain HOO34_10915 PF00317 Ribonucleotide reductase, all-alpha domain HOO34_10915 PF03477 ATP cone domain HOO34_10915 PF02867 Ribonucleotide reductase, barrel domain HOO34_10920 PF00206 Lyase HOO34_10920 PF10397 Adenylosuccinate lyase C-terminus HOO34_10925 PF00849 RNA pseudouridylate synthase HOO34_10955 PF00291 Pyridoxal-phosphate dependent enzyme HOO34_10960 PF04264 YceI-like domain HOO34_10965 PF00873 AcrB/AcrD/AcrF family HOO34_10985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_10990 PF00072 Response regulator receiver domain HOO34_10990 PF00486 Transcriptional regulatory protein, C terminal HOO34_10995 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HOO34_11000 PF00749 tRNA synthetases class I (E and Q), catalytic domain HOO34_11005 PF04055 Radical SAM superfamily HOO34_11020 PF00977 Histidine biosynthesis protein HOO34_11025 PF00398 Ribosomal RNA adenine dimethylase HOO34_11030 PF00753 Metallo-beta-lactamase superfamily HOO34_11030 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HOO34_11030 PF17770 Ribonuclease J C-terminal domain HOO34_11035 PF00571 CBS domain HOO34_11035 PF01380 SIS domain HOO34_11040 PF01479 S4 domain HOO34_11040 PF00849 RNA pseudouridylate synthase HOO34_11045 PF05496 Holliday junction DNA helicase RuvB P-loop domain HOO34_11045 PF12002 MgsA AAA+ ATPase C terminal HOO34_11045 PF01661 Macro domain HOO34_11045 PF16193 AAA C-terminal domain HOO34_11050 PF03653 Uncharacterised protein family (UPF0093) HOO34_11055 PF02562 PhoH-like protein HOO34_11055 PF13638 PIN domain HOO34_11065 PF13537 Glutamine amidotransferase domain HOO34_11065 PF00733 Asparagine synthase HOO34_11075 PF01384 Phosphate transporter family HOO34_11095 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HOO34_11105 PF00149 Calcineurin-like phosphoesterase HOO34_11110 PF00011 Hsp20/alpha crystallin family HOO34_11120 PF00005 ABC transporter HOO34_11120 PF17850 CysA C-terminal regulatory domain HOO34_11120 PF12857 TOBE-like domain HOO34_11125 PF00528 Binding-protein-dependent transport system inner membrane component HOO34_11130 PF00528 Binding-protein-dependent transport system inner membrane component HOO34_11135 PF10442 FIST C domain HOO34_11135 PF08495 FIST N domain HOO34_11135 PF00990 Diguanylate cyclase, GGDEF domain HOO34_11135 PF00563 EAL domain HOO34_11140 PF00899 ThiF family HOO34_11140 PF00581 Rhodanese-like domain HOO34_11155 PF02082 Transcriptional regulator HOO34_11160 PF03144 Elongation factor Tu domain 2 HOO34_11160 PF00009 Elongation factor Tu GTP binding domain HOO34_11160 PF00679 Elongation factor G C-terminus HOO34_11165 PF00672 HAMP domain HOO34_11165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO34_11165 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HOO34_11165 PF00512 His Kinase A (phospho-acceptor) domain HOO34_11165 PF01627 Hpt domain HOO34_11165 PF00072 Response regulator receiver domain HOO34_11175 PF02371 Transposase IS116/IS110/IS902 family HOO34_11175 PF01548 Transposase HOO34_11180 PF00072 Response regulator receiver domain HOO34_11185 PF08448 PAS fold HOO34_11185 PF00990 Diguanylate cyclase, GGDEF domain HOO34_11215 PF00486 Transcriptional regulatory protein, C terminal HOO34_11215 PF00072 Response regulator receiver domain HOO34_11225 PF02511 Thymidylate synthase complementing protein HOO34_11230 PF03458 UPF0126 domain HOO34_11240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO34_11240 PF02203 Tar ligand binding domain homologue HOO34_11240 PF00672 HAMP domain HOO34_11250 PF16226 Domain of unknown function (DUF4885) HOO34_11255 PF00551 Formyl transferase HOO34_11260 PF02075 Crossover junction endodeoxyribonuclease RuvC