locus-tag class description ACRYD_0001 PF00308 Bacterial dnaA protein ACRYD_0001 PF08299 Bacterial dnaA protein helix-turn-helix ACRYD_0001 PF11638 DnaA N-terminal domain ACRYD_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ACRYD_0002 PF02767 DNA polymerase III beta subunit, central domain ACRYD_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ACRYD_0003 PF00204 DNA gyrase B ACRYD_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ACRYD_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0003 PF01751 Toprim domain ACRYD_0004 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYD_0005 PF14489 QueF-like protein ACRYD_0009 PF13649 Methyltransferase domain ACRYD_0010 PF00005 ABC transporter ACRYD_0010 PF08402 TOBE domain ACRYD_0011 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_0014 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYD_0014 PF03459 TOBE domain ACRYD_0016 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYD_0016 PF03466 LysR substrate binding domain ACRYD_0020 PF00529 HlyD membrane-fusion protein of T1SS ACRYD_0020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACRYD_0021 PF00873 AcrB/AcrD/AcrF family ACRYD_0022 PF02321 Outer membrane efflux protein ACRYD_0023 PF00672 HAMP domain ACRYD_0023 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0027 PF01053 Cys/Met metabolism PLP-dependent enzyme ACRYD_0028 PF02082 Transcriptional regulator ACRYD_0029 PF00291 Pyridoxal-phosphate dependent enzyme ACRYD_0031 PF01507 Phosphoadenosine phosphosulfate reductase family ACRYD_0032 PF01507 Phosphoadenosine phosphosulfate reductase family ACRYD_0033 PF00009 Elongation factor Tu GTP binding domain ACRYD_0035 PF07690 Major Facilitator Superfamily ACRYD_0036 PF00210 Ferritin-like domain ACRYD_0037 PF13419 Haloacid dehalogenase-like hydrolase ACRYD_0038 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACRYD_0038 PF00205 Thiamine pyrophosphate enzyme, central domain ACRYD_0038 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACRYD_0039 PF00171 Aldehyde dehydrogenase family ACRYD_0040 PF03167 Uracil DNA glycosylase superfamily ACRYD_0043 PF03883 Peroxide stress protein YaaA ACRYD_0044 PF01544 CorA-like Mg2+ transporter protein ACRYD_0047 PF00156 Phosphoribosyl transferase domain ACRYD_0048 PF01765 Ribosome recycling factor ACRYD_0049 PF03840 Preprotein translocase SecG subunit ACRYD_0051 PF02581 Thiamine monophosphate synthase ACRYD_0051 PF17792 ThiD2 family ACRYD_0052 PF01027 Inhibitor of apoptosis-promoting Bax1 ACRYD_0058 PF07650 KH domain ACRYD_0058 PF01926 50S ribosome-binding GTPase ACRYD_0062 PF00482 Type II secretion system (T2SS), protein F ACRYD_0063 PF01544 CorA-like Mg2+ transporter protein ACRYD_0064 PF01227 GTP cyclohydrolase I ACRYD_0065 PF00005 ABC transporter ACRYD_0065 PF08402 TOBE domain ACRYD_0066 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_0067 PF13416 Bacterial extracellular solute-binding protein ACRYD_0069 PF00117 Glutamine amidotransferase class-I ACRYD_0079 PF02677 Epoxyqueuosine reductase QueH ACRYD_0080 PF02684 Lipid-A-disaccharide synthetase ACRYD_0081 PF07977 FabA-like domain ACRYD_0082 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ACRYD_0082 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_0083 PF07724 AAA domain (Cdc48 subfamily) ACRYD_0083 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYD_0083 PF06689 ClpX C4-type zinc finger ACRYD_0086 PF00677 Lumazine binding domain ACRYD_0087 PF13932 GidA associated domain ACRYD_0087 PF01134 Glucose inhibited division protein A ACRYD_0088 PF01261 Xylose isomerase-like TIM barrel ACRYD_0089 PF00106 short chain dehydrogenase ACRYD_0090 PF01740 STAS domain ACRYD_0090 PF00916 Sulfate permease family ACRYD_0093 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_0093 PF16450 Proteasomal ATPase OB C-terminal domain ACRYD_0093 PF17758 Proteasomal ATPase OB N-terminal domain ACRYD_0095 PF02621 Menaquinone biosynthesis ACRYD_0096 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ACRYD_0098 PF13368 Topoisomerase C-terminal repeat ACRYD_0098 PF01751 Toprim domain ACRYD_0098 PF01131 DNA topoisomerase ACRYD_0100 PF06968 Biotin and Thiamin Synthesis associated domain ACRYD_0100 PF04055 Radical SAM superfamily ACRYD_0101 PF00154 recA bacterial DNA recombination protein ACRYD_0113 PF01555 DNA methylase ACRYD_0116 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_0117 PF02348 Cytidylyltransferase ACRYD_0119 PF03102 NeuB family ACRYD_0119 PF08666 SAF domain ACRYD_0123 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system ACRYD_0125 PF13193 AMP-binding enzyme C-terminal domain ACRYD_0125 PF00501 AMP-binding enzyme ACRYD_0125 PF01553 Acyltransferase ACRYD_0126 PF01467 Cytidylyltransferase-like ACRYD_0130 PF00535 Glycosyl transferase family 2 ACRYD_0132 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACRYD_0132 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACRYD_0132 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACRYD_0137 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_0138 PF08889 WbqC-like protein family ACRYD_0143 PF13649 Methyltransferase domain ACRYD_0147 PF02719 Polysaccharide biosynthesis protein ACRYD_0148 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_0151 PF03102 NeuB family ACRYD_0151 PF08666 SAF domain ACRYD_0152 PF02350 UDP-N-acetylglucosamine 2-epimerase ACRYD_0153 PF00483 Nucleotidyl transferase ACRYD_0154 PF02348 Cytidylyltransferase ACRYD_0154 PF13472 GDSL-like Lipase/Acylhydrolase family ACRYD_0156 PF00483 Nucleotidyl transferase ACRYD_0157 PF16363 GDP-mannose 4,6 dehydratase ACRYD_0158 PF01370 NAD dependent epimerase/dehydratase family ACRYD_0161 PF00669 Bacterial flagellin N-terminal helical region ACRYD_0161 PF07196 Flagellin hook IN motif ACRYD_0161 PF00700 Bacterial flagellin C-terminal helical region ACRYD_0162 PF00700 Bacterial flagellin C-terminal helical region ACRYD_0162 PF07196 Flagellin hook IN motif ACRYD_0162 PF00669 Bacterial flagellin N-terminal helical region ACRYD_0165 PF05958 tRNA (Uracil-5-)-methyltransferase ACRYD_0168 PF00270 DEAD/DEAH box helicase ACRYD_0168 PF00271 Helicase conserved C-terminal domain ACRYD_0168 PF17191 RecG wedge domain ACRYD_0170 PF14602 Hexapeptide repeat of succinyl-transferase ACRYD_0170 PF12804 MobA-like NTP transferase domain ACRYD_0171 PF04127 DNA / pantothenate metabolism flavoprotein ACRYD_0171 PF02441 Flavoprotein ACRYD_0172 PF01255 Putative undecaprenyl diphosphate synthase ACRYD_0175 PF01416 tRNA pseudouridine synthase ACRYD_0177 PF01628 HrcA protein C terminal domain ACRYD_0178 PF01025 GrpE ACRYD_0179 PF00012 Hsp70 protein ACRYD_0183 PF04028 Domain of unknown function (DUF374) ACRYD_0184 PF00919 Uncharacterized protein family UPF0004 ACRYD_0184 PF01938 TRAM domain ACRYD_0184 PF04055 Radical SAM superfamily ACRYD_0186 PF13184 NusA-like KH domain ACRYD_0186 PF08529 NusA N-terminal domain ACRYD_0187 PF01406 tRNA synthetases class I (C) catalytic domain ACRYD_0187 PF09190 DALR domain ACRYD_0188 PF03960 ArsC family ACRYD_0189 PF02686 Glu-tRNAGln amidotransferase C subunit ACRYD_0190 PF01702 Queuine tRNA-ribosyltransferase ACRYD_0193 PF01225 Mur ligase family, catalytic domain ACRYD_0193 PF02875 Mur ligase family, glutamate ligase domain ACRYD_0193 PF08245 Mur ligase middle domain ACRYD_0196 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACRYD_0196 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ACRYD_0197 PF00773 RNB domain ACRYD_0199 PF06144 DNA polymerase III, delta subunit ACRYD_0200 PF01250 Ribosomal protein S6 ACRYD_0201 PF00436 Single-strand binding protein family ACRYD_0202 PF01084 Ribosomal protein S18 ACRYD_0203 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACRYD_0204 PF03462 PCRF domain ACRYD_0204 PF00472 RF-1 domain ACRYD_0207 PF02660 Glycerol-3-phosphate acyltransferase ACRYD_0208 PF02445 Quinolinate synthetase A protein ACRYD_0209 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACRYD_0209 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACRYD_0212 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ACRYD_0214 PF08544 GHMP kinases C terminal ACRYD_0214 PF00288 GHMP kinases N terminal domain ACRYD_0216 PF00009 Elongation factor Tu GTP binding domain ACRYD_0216 PF11987 Translation-initiation factor 2 ACRYD_0216 PF04760 Translation initiation factor IF-2, N-terminal region ACRYD_0217 PF02033 Ribosome-binding factor A ACRYD_0218 PF02576 RimP N-terminal domain ACRYD_0219 PF01872 RibD C-terminal domain ACRYD_0219 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACRYD_0220 PF09285 Elongation factor P, C-terminal ACRYD_0220 PF08207 Elongation factor P (EF-P) KOW-like domain ACRYD_0220 PF01132 Elongation factor P (EF-P) OB domain ACRYD_0221 PF01842 ACT domain ACRYD_0221 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACRYD_0221 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACRYD_0222 PF00575 S1 RNA binding domain ACRYD_0223 PF02401 LytB protein ACRYD_0224 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACRYD_0225 PF01588 Putative tRNA binding domain ACRYD_0225 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACRYD_0225 PF03147 Ferredoxin-fold anticodon binding domain ACRYD_0225 PF03484 tRNA synthetase B5 domain ACRYD_0226 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACRYD_0226 PF01409 tRNA synthetases class II core domain (F) ACRYD_0227 PF01230 HIT domain ACRYD_0228 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACRYD_0229 PF02801 Beta-ketoacyl synthase, C-terminal domain ACRYD_0229 PF00109 Beta-ketoacyl synthase, N-terminal domain ACRYD_0230 PF00550 Phosphopantetheine attachment site ACRYD_0234 PF06508 Queuosine biosynthesis protein QueC ACRYD_0238 PF00033 Cytochrome b/b6/petB ACRYD_0238 PF00032 Cytochrome b(C-terminal)/b6/petD ACRYD_0240 PF00291 Pyridoxal-phosphate dependent enzyme ACRYD_0241 PF00696 Amino acid kinase family ACRYD_0242 PF00580 UvrD/REP helicase N-terminal domain ACRYD_0242 PF13361 UvrD-like helicase C-terminal domain ACRYD_0244 PF00119 ATP synthase A chain ACRYD_0245 PF13291 ACT domain ACRYD_0245 PF00291 Pyridoxal-phosphate dependent enzyme ACRYD_0246 PF01116 Fructose-bisphosphate aldolase class-II ACRYD_0248 PF00486 Transcriptional regulatory protein, C terminal ACRYD_0248 PF00072 Response regulator receiver domain ACRYD_0249 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0249 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_0250 PF01545 Cation efflux family ACRYD_0250 PF16916 Dimerisation domain of Zinc Transporter ACRYD_0254 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACRYD_0254 PF02403 Seryl-tRNA synthetase N-terminal domain ACRYD_0256 PF00563 EAL domain ACRYD_0256 PF08495 FIST N domain ACRYD_0256 PF10442 FIST C domain ACRYD_0256 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_0260 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ACRYD_0261 PF12801 4Fe-4S binding domain ACRYD_0261 PF13237 4Fe-4S dicluster domain ACRYD_0262 PF12800 4Fe-4S binding domain ACRYD_0262 PF12838 4Fe-4S dicluster domain ACRYD_0263 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACRYD_0263 PF00384 Molybdopterin oxidoreductase ACRYD_0263 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACRYD_0263 PF01568 Molydopterin dinucleotide binding domain ACRYD_0266 PF00591 Glycosyl transferase family, a/b domain ACRYD_0266 PF02885 Glycosyl transferase family, helical bundle domain ACRYD_0267 PF04055 Radical SAM superfamily ACRYD_0267 PF06463 Molybdenum Cofactor Synthesis C ACRYD_0268 PF00312 Ribosomal protein S15 ACRYD_0272 PF02203 Tar ligand binding domain homologue ACRYD_0272 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0272 PF00672 HAMP domain ACRYD_0277 PF01575 MaoC like domain ACRYD_0278 PF13193 AMP-binding enzyme C-terminal domain ACRYD_0278 PF00501 AMP-binding enzyme ACRYD_0282 PF02617 ATP-dependent Clp protease adaptor protein ClpS ACRYD_0283 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYD_0283 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_0283 PF07724 AAA domain (Cdc48 subfamily) ACRYD_0283 PF02861 Clp amino terminal domain, pathogenicity island component ACRYD_0283 PF17871 AAA lid domain ACRYD_0291 PF00113 Enolase, C-terminal TIM barrel domain ACRYD_0291 PF03952 Enolase, N-terminal domain ACRYD_0294 PF07690 Major Facilitator Superfamily ACRYD_0296 PF00164 Ribosomal protein S12/S23 ACRYD_0297 PF00177 Ribosomal protein S7p/S5e ACRYD_0298 PF03144 Elongation factor Tu domain 2 ACRYD_0298 PF00679 Elongation factor G C-terminus ACRYD_0298 PF14492 Elongation Factor G, domain II ACRYD_0298 PF03764 Elongation factor G, domain IV ACRYD_0298 PF00009 Elongation factor Tu GTP binding domain ACRYD_0299 PF01513 ATP-NAD kinase ACRYD_0300 PF13476 AAA domain ACRYD_0301 PF17200 Single Cache domain 2 ACRYD_0301 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0301 PF00672 HAMP domain ACRYD_0302 PF01136 Peptidase family U32 ACRYD_0304 PF00731 AIR carboxylase ACRYD_0306 PF02091 Glycyl-tRNA synthetase alpha subunit ACRYD_0307 PF01784 NIF3 (NGG1p interacting factor 3) ACRYD_0309 PF02390 Putative methyltransferase ACRYD_0309 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ACRYD_0310 PF00849 RNA pseudouridylate synthase ACRYD_0311 PF02978 Signal peptide binding domain ACRYD_0311 PF02881 SRP54-type protein, helical bundle domain ACRYD_0311 PF00448 SRP54-type protein, GTPase domain ACRYD_0312 PF00886 Ribosomal protein S16 ACRYD_0314 PF01782 RimM N-terminal domain ACRYD_0317 PF00460 Flagella basal body rod protein ACRYD_0317 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYD_0318 PF00072 Response regulator receiver domain ACRYD_0320 PF00460 Flagella basal body rod protein ACRYD_0320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYD_0321 PF00460 Flagella basal body rod protein ACRYD_0322 PF01514 Secretory protein of YscJ/FliF family ACRYD_0322 PF08345 Flagellar M-ring protein C-terminal ACRYD_0323 PF14842 FliG N-terminal domain ACRYD_0323 PF14841 FliG middle domain ACRYD_0323 PF01706 FliG C-terminal domain ACRYD_0325 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACRYD_0327 PF07196 Flagellin hook IN motif ACRYD_0327 PF00460 Flagella basal body rod protein ACRYD_0327 PF07559 Flagellar basal body protein FlaE ACRYD_0327 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYD_0328 PF07559 Flagellar basal body protein FlaE ACRYD_0328 PF07196 Flagellin hook IN motif ACRYD_0328 PF00460 Flagella basal body rod protein ACRYD_0328 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYD_0332 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACRYD_0332 PF16973 Flagellar motor switch protein FliN N-terminal ACRYD_0336 PF00448 SRP54-type protein, GTPase domain ACRYD_0337 PF10609 NUBPL iron-transfer P-loop NTPase ACRYD_0339 PF02049 Flagellar hook-basal body complex protein FliE ACRYD_0340 PF00460 Flagella basal body rod protein ACRYD_0340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYD_0343 PF01312 FlhB HrpN YscU SpaS Family ACRYD_0345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYD_0345 PF18269 T3SS EscN ATPase C-terminal domain ACRYD_0347 PF00771 FHIPEP family ACRYD_0349 PF01613 Flavin reductase like domain ACRYD_0351 PF02203 Tar ligand binding domain homologue ACRYD_0351 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0351 PF00672 HAMP domain ACRYD_0352 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0352 PF02203 Tar ligand binding domain homologue ACRYD_0352 PF00672 HAMP domain ACRYD_0353 PF08447 PAS fold ACRYD_0353 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0354 PF00672 HAMP domain ACRYD_0354 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0354 PF02203 Tar ligand binding domain homologue ACRYD_0356 PF00563 EAL domain ACRYD_0356 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_0356 PF03707 Bacterial signalling protein N terminal repeat ACRYD_0357 PF08267 Cobalamin-independent synthase, N-terminal domain ACRYD_0357 PF01717 Cobalamin-independent synthase, Catalytic domain ACRYD_0359 PF01746 tRNA (Guanine-1)-methyltransferase ACRYD_0360 PF01245 Ribosomal protein L19 ACRYD_0361 PF09335 SNARE associated Golgi protein ACRYD_0362 PF00155 Aminotransferase class I and II ACRYD_0363 PF12833 Helix-turn-helix domain ACRYD_0365 PF01042 Endoribonuclease L-PSP ACRYD_0366 PF06738 Putative threonine/serine exporter ACRYD_0366 PF12821 Threonine/Serine exporter, ThrE ACRYD_0367 PF06738 Putative threonine/serine exporter ACRYD_0370 PF01618 MotA/TolQ/ExbB proton channel family ACRYD_0371 PF02472 Biopolymer transport protein ExbD/TolR ACRYD_0372 PF00171 Aldehyde dehydrogenase family ACRYD_0373 PF02659 Putative manganese efflux pump ACRYD_0374 PF00579 tRNA synthetases class I (W and Y) ACRYD_0376 PF01594 AI-2E family transporter ACRYD_0378 PF01634 ATP phosphoribosyltransferase ACRYD_0379 PF03309 Type III pantothenate kinase ACRYD_0382 PF05538 Campylobacter major outer membrane protein ACRYD_0383 PF01202 Shikimate kinase ACRYD_0384 PF00815 Histidinol dehydrogenase ACRYD_0386 PF00348 Polyprenyl synthetase ACRYD_0387 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ACRYD_0387 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ACRYD_0387 PF01488 Shikimate / quinate 5-dehydrogenase ACRYD_0388 PF03129 Anticodon binding domain ACRYD_0388 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACRYD_0388 PF04073 Aminoacyl-tRNA editing domain ACRYD_0389 PF00924 Mechanosensitive ion channel ACRYD_0389 PF05552 Conserved TM helix ACRYD_0390 PF01966 HD domain ACRYD_0390 PF01743 Poly A polymerase head domain ACRYD_0390 PF12627 Probable RNA and SrmB- binding site of polymerase A ACRYD_0392 PF02699 Preprotein translocase subunit ACRYD_0393 PF02355 Protein export membrane protein ACRYD_0394 PF07549 SecD/SecF GG Motif ACRYD_0394 PF02355 Protein export membrane protein ACRYD_0397 PF00691 OmpA family ACRYD_0397 PF13677 Membrane MotB of proton-channel complex MotA/MotB ACRYD_0398 PF01618 MotA/TolQ/ExbB proton channel family ACRYD_0400 PF09334 tRNA synthetases class I (M) ACRYD_0400 PF13603 Leucyl-tRNA synthetase, Domain 2 ACRYD_0400 PF00133 tRNA synthetases class I (I, L, M and V) ACRYD_0402 PF08245 Mur ligase middle domain ACRYD_0407 PF02559 CarD-like/TRCF domain ACRYD_0407 PF17757 UvrB interaction domain ACRYD_0407 PF03461 TRCF domain ACRYD_0407 PF00271 Helicase conserved C-terminal domain ACRYD_0407 PF00270 DEAD/DEAH box helicase ACRYD_0409 PF13302 Acetyltransferase (GNAT) domain ACRYD_0411 PF00800 Prephenate dehydratase ACRYD_0411 PF01817 Chorismate mutase type II ACRYD_0412 PF13673 Acetyltransferase (GNAT) domain ACRYD_0415 PF01381 Helix-turn-helix ACRYD_0419 PF00912 Transglycosylase ACRYD_0419 PF00905 Penicillin binding protein transpeptidase domain ACRYD_0420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACRYD_0420 PF00005 ABC transporter ACRYD_0421 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACRYD_0421 PF01676 Metalloenzyme superfamily ACRYD_0422 PF00953 Glycosyl transferase family 4 ACRYD_0422 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ACRYD_0423 PF08245 Mur ligase middle domain ACRYD_0428 PF03143 Elongation factor Tu C-terminal domain ACRYD_0428 PF00009 Elongation factor Tu GTP binding domain ACRYD_0428 PF03144 Elongation factor Tu domain 2 ACRYD_0429 PF00471 Ribosomal protein L33 ACRYD_0432 PF02357 Transcription termination factor nusG ACRYD_0433 PF03946 Ribosomal protein L11, N-terminal domain ACRYD_0433 PF00298 Ribosomal protein L11, RNA binding domain ACRYD_0434 PF00687 Ribosomal protein L1p/L10e family ACRYD_0435 PF00466 Ribosomal protein L10 ACRYD_0436 PF16320 Ribosomal protein L7/L12 dimerisation domain ACRYD_0436 PF00542 Ribosomal protein L7/L12 C-terminal domain ACRYD_0437 PF04563 RNA polymerase beta subunit ACRYD_0437 PF04561 RNA polymerase Rpb2, domain 2 ACRYD_0437 PF04565 RNA polymerase Rpb2, domain 3 ACRYD_0437 PF10385 RNA polymerase beta subunit external 1 domain ACRYD_0437 PF00562 RNA polymerase Rpb2, domain 6 ACRYD_0437 PF04560 RNA polymerase Rpb2, domain 7 ACRYD_0438 PF00623 RNA polymerase Rpb1, domain 2 ACRYD_0438 PF04997 RNA polymerase Rpb1, domain 1 ACRYD_0438 PF04983 RNA polymerase Rpb1, domain 3 ACRYD_0438 PF05000 RNA polymerase Rpb1, domain 4 ACRYD_0438 PF04998 RNA polymerase Rpb1, domain 5 ACRYD_0442 PF00255 Glutathione peroxidase ACRYD_0443 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACRYD_0443 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACRYD_0443 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ACRYD_0444 PF00374 Nickel-dependent hydrogenase ACRYD_0445 PF01292 Prokaryotic cytochrome b561 ACRYD_0446 PF01750 Hydrogenase maturation protease ACRYD_0451 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACRYD_0452 PF01455 HupF/HypC family ACRYD_0453 PF01924 Hydrogenase formation hypA family ACRYD_0454 PF17761 DUF1016 N-terminal domain ACRYD_0454 PF06250 YhcG PDDEXK nuclease domain ACRYD_0456 PF00586 AIR synthase related protein, N-terminal domain ACRYD_0456 PF02769 AIR synthase related protein, C-terminal domain ACRYD_0457 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ACRYD_0459 PF01891 Cobalt uptake substrate-specific transmembrane region ACRYD_0459 PF13190 PDGLE domain ACRYD_0462 PF00005 ABC transporter ACRYD_0463 PF00072 Response regulator receiver domain ACRYD_0463 PF00486 Transcriptional regulatory protein, C terminal ACRYD_0466 PF00069 Protein kinase domain ACRYD_0466 PF03793 PASTA domain ACRYD_0468 PF00563 EAL domain ACRYD_0468 PF03707 Bacterial signalling protein N terminal repeat ACRYD_0468 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_0470 PF00793 DAHP synthetase I family ACRYD_0472 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACRYD_0474 PF03631 Virulence factor BrkB ACRYD_0475 PF02913 FAD linked oxidases, C-terminal domain ACRYD_0475 PF01565 FAD binding domain ACRYD_0477 PF00578 AhpC/TSA family ACRYD_0478 PF13649 Methyltransferase domain ACRYD_0479 PF06574 FAD synthetase ACRYD_0479 PF01687 Riboflavin kinase ACRYD_0480 PF01728 FtsJ-like methyltransferase ACRYD_0480 PF01479 S4 domain ACRYD_0482 PF09186 Domain of unknown function (DUF1949) ACRYD_0482 PF01205 Uncharacterized protein family UPF0029 ACRYD_0486 PF00459 Inositol monophosphatase family ACRYD_0487 PF00037 4Fe-4S binding domain ACRYD_0489 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACRYD_0493 PF00483 Nucleotidyl transferase ACRYD_0494 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACRYD_0495 PF04321 RmlD substrate binding domain ACRYD_0496 PF16363 GDP-mannose 4,6 dehydratase ACRYD_0500 PF03062 MBOAT, membrane-bound O-acyltransferase family ACRYD_0502 PF03062 MBOAT, membrane-bound O-acyltransferase family ACRYD_0506 PF13439 Glycosyltransferase Family 4 ACRYD_0506 PF00534 Glycosyl transferases group 1 ACRYD_0509 PF00535 Glycosyl transferase family 2 ACRYD_0510 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACRYD_0513 PF13580 SIS domain ACRYD_0514 PF01467 Cytidylyltransferase-like ACRYD_0514 PF00294 pfkB family carbohydrate kinase ACRYD_0515 PF01370 NAD dependent epimerase/dehydratase family ACRYD_0518 PF00830 Ribosomal L28 family ACRYD_0520 PF01960 ArgJ family ACRYD_0522 PF03989 DNA gyrase C-terminal domain, beta-propeller ACRYD_0522 PF00521 DNA gyrase/topoisomerase IV, subunit A ACRYD_0523 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACRYD_0523 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACRYD_0525 PF01208 Uroporphyrinogen decarboxylase (URO-D) ACRYD_0535 PF00005 ABC transporter ACRYD_0538 PF04264 YceI-like domain ACRYD_0540 PF00149 Calcineurin-like phosphoesterase ACRYD_0541 PF00486 Transcriptional regulatory protein, C terminal ACRYD_0541 PF00072 Response regulator receiver domain ACRYD_0542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0542 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_0542 PF00672 HAMP domain ACRYD_0543 PF00005 ABC transporter ACRYD_0544 PF00950 ABC 3 transport family ACRYD_0545 PF17783 CvfB-like winged helix domain ACRYD_0545 PF13509 S1 domain ACRYD_0546 PF08534 Redoxin ACRYD_0550 PF08264 Anticodon-binding domain of tRNA ACRYD_0550 PF00133 tRNA synthetases class I (I, L, M and V) ACRYD_0550 PF10458 Valyl tRNA synthetase tRNA binding arm ACRYD_0552 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0552 PF13426 PAS domain ACRYD_0552 PF08447 PAS fold ACRYD_0554 PF07690 Major Facilitator Superfamily ACRYD_0555 PF01725 Ham1 family ACRYD_0558 PF14748 Pyrroline-5-carboxylate reductase dimerisation ACRYD_0558 PF03807 NADP oxidoreductase coenzyme F420-dependent ACRYD_0560 PF13525 Outer membrane lipoprotein ACRYD_0561 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_0561 PF05362 Lon protease (S16) C-terminal proteolytic domain ACRYD_0561 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACRYD_0563 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACRYD_0567 PF02785 Biotin carboxylase C-terminal domain ACRYD_0567 PF00289 Biotin carboxylase, N-terminal domain ACRYD_0567 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACRYD_0569 PF02657 Fe-S metabolism associated domain ACRYD_0570 PF00266 Aminotransferase class-V ACRYD_0572 PF00005 ABC transporter ACRYD_0573 PF01458 Uncharacterized protein family (UPF0051) ACRYD_0574 PF04324 BFD-like [2Fe-2S] binding domain ACRYD_0574 PF01106 NifU-like domain ACRYD_0574 PF01592 NifU-like N terminal domain ACRYD_0576 PF07694 5TMR of 5TMR-LYT ACRYD_0576 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_0577 PF14698 Argininosuccinate lyase C-terminal ACRYD_0577 PF00206 Lyase ACRYD_0578 PF00271 Helicase conserved C-terminal domain ACRYD_0578 PF04851 Type III restriction enzyme, res subunit ACRYD_0578 PF02151 UvrB/uvrC motif ACRYD_0578 PF12344 Ultra-violet resistance protein B ACRYD_0578 PF17757 UvrB interaction domain ACRYD_0580 PF01272 Transcription elongation factor, GreA/GreB, C-term ACRYD_0580 PF03449 Transcription elongation factor, N-terminal ACRYD_0581 PF00899 ThiF family ACRYD_0582 PF01584 CheW-like domain ACRYD_0582 PF00072 Response regulator receiver domain ACRYD_0585 PF00633 Helix-hairpin-helix motif ACRYD_0585 PF00730 HhH-GPD superfamily base excision DNA repair protein ACRYD_0585 PF10576 Iron-sulfur binding domain of endonuclease III ACRYD_0586 PF00586 AIR synthase related protein, N-terminal domain ACRYD_0586 PF02769 AIR synthase related protein, C-terminal domain ACRYD_0587 PF01142 tRNA pseudouridine synthase D (TruD) ACRYD_0589 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0589 PF00672 HAMP domain ACRYD_0589 PF02203 Tar ligand binding domain homologue ACRYD_0590 PF07499 RuvA, C-terminal domain ACRYD_0590 PF01330 RuvA N terminal domain ACRYD_0591 PF07478 D-ala D-ala ligase C-terminus ACRYD_0591 PF01820 D-ala D-ala ligase N-terminus ACRYD_0593 PF02875 Mur ligase family, glutamate ligase domain ACRYD_0593 PF08245 Mur ligase middle domain ACRYD_0608 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ ACRYD_0612 PF13195 Protein of unknown function (DUF4011) ACRYD_0612 PF13086 AAA domain ACRYD_0612 PF13087 AAA domain ACRYD_0616 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACRYD_0617 PF01029 NusB family ACRYD_0618 PF00885 6,7-dimethyl-8-ribityllumazine synthase ACRYD_0619 PF00120 Glutamine synthetase, catalytic domain ACRYD_0619 PF03951 Glutamine synthetase, beta-Grasp domain ACRYD_0621 PF02391 MoaE protein ACRYD_0623 PF02621 Menaquinone biosynthesis ACRYD_0624 PF02673 Bacitracin resistance protein BacA ACRYD_0625 PF04101 Glycosyltransferase family 28 C-terminal domain ACRYD_0625 PF03033 Glycosyltransferase family 28 N-terminal domain ACRYD_0626 PF01098 Cell cycle protein ACRYD_0627 PF03793 PASTA domain ACRYD_0627 PF03717 Penicillin-binding Protein dimerisation domain ACRYD_0627 PF00905 Penicillin binding protein transpeptidase domain ACRYD_0628 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACRYD_0629 PF03150 Di-haem cytochrome c peroxidase ACRYD_0630 PF04116 Fatty acid hydroxylase superfamily ACRYD_0635 PF00137 ATP synthase subunit C ACRYD_0638 PF00005 ABC transporter ACRYD_0639 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_0640 PF03480 Bacterial extracellular solute-binding protein, family 7 ACRYD_0641 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ACRYD_0642 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ACRYD_0643 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0643 PF08447 PAS fold ACRYD_0643 PF08448 PAS fold ACRYD_0644 PF00072 Response regulator receiver domain ACRYD_0646 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_0646 PF00563 EAL domain ACRYD_0646 PF01590 GAF domain ACRYD_0646 PF00360 Phytochrome region ACRYD_0648 PF00072 Response regulator receiver domain ACRYD_0648 PF00486 Transcriptional regulatory protein, C terminal ACRYD_0651 PF00672 HAMP domain ACRYD_0651 PF02203 Tar ligand binding domain homologue ACRYD_0651 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0652 PF02954 Bacterial regulatory protein, Fis family ACRYD_0652 PF00072 Response regulator receiver domain ACRYD_0652 PF00158 Sigma-54 interaction domain ACRYD_0653 PF13426 PAS domain ACRYD_0653 PF07536 HWE histidine kinase ACRYD_0653 PF13581 Histidine kinase-like ATPase domain ACRYD_0654 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_0654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0654 PF13188 PAS domain ACRYD_0654 PF13426 PAS domain ACRYD_0654 PF00989 PAS fold ACRYD_0655 PF13277 YmdB-like protein ACRYD_0658 PF01209 ubiE/COQ5 methyltransferase family ACRYD_0659 PF02601 Exonuclease VII, large subunit ACRYD_0659 PF13742 OB-fold nucleic acid binding domain ACRYD_0660 PF01584 CheW-like domain ACRYD_0661 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACRYD_0662 PF02261 Aspartate decarboxylase ACRYD_0663 PF02575 YbaB/EbfC DNA-binding family ACRYD_0664 PF00348 Polyprenyl synthetase ACRYD_0665 PF00166 Chaperonin 10 Kd subunit ACRYD_0666 PF00118 TCP-1/cpn60 chaperonin family ACRYD_0667 PF07943 Penicillin-binding protein 5, C-terminal domain ACRYD_0667 PF00768 D-alanyl-D-alanine carboxypeptidase ACRYD_0668 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_0670 PF02472 Biopolymer transport protein ExbD/TolR ACRYD_0671 PF01618 MotA/TolQ/ExbB proton channel family ACRYD_0674 PF12704 MacB-like periplasmic core domain ACRYD_0674 PF00005 ABC transporter ACRYD_0674 PF02687 FtsX-like permease family ACRYD_0675 PF02687 FtsX-like permease family ACRYD_0675 PF00005 ABC transporter ACRYD_0675 PF12704 MacB-like periplasmic core domain ACRYD_0676 PF01351 Ribonuclease HII ACRYD_0677 PF17871 AAA lid domain ACRYD_0677 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYD_0677 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_0677 PF07724 AAA domain (Cdc48 subfamily) ACRYD_0677 PF02861 Clp amino terminal domain, pathogenicity island component ACRYD_0678 PF00468 Ribosomal protein L34 ACRYD_0679 PF00825 Ribonuclease P ACRYD_0680 PF01809 Putative membrane protein insertion efficiency factor ACRYD_0681 PF02096 60Kd inner membrane protein ACRYD_0681 PF14849 YidC periplasmic domain ACRYD_0683 PF12631 MnmE helical domain ACRYD_0683 PF01926 50S ribosome-binding GTPase ACRYD_0683 PF10396 GTP-binding protein TrmE N-terminus ACRYD_0685 PF00300 Histidine phosphatase superfamily (branch 1) ACRYD_0687 PF17158 Membrane-associated sensor, integral membrane domain ACRYD_0687 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_0689 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ACRYD_0690 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ACRYD_0691 PF04715 Anthranilate synthase component I, N terminal region ACRYD_0691 PF00425 chorismate binding enzyme ACRYD_0693 PF00464 Serine hydroxymethyltransferase ACRYD_0694 PF01336 OB-fold nucleic acid binding domain ACRYD_0694 PF00152 tRNA synthetases class II (D, K and N) ACRYD_0696 PF08447 PAS fold ACRYD_0696 PF08448 PAS fold ACRYD_0696 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0697 PF04551 GcpE protein ACRYD_0698 PF03796 DnaB-like helicase C terminal domain ACRYD_0698 PF00772 DnaB-like helicase N terminal domain ACRYD_0699 PF08334 Type II secretion system (T2SS), protein G ACRYD_0699 PF07963 Prokaryotic N-terminal methylation motif ACRYD_0700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_0701 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACRYD_0701 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACRYD_0702 PF07715 TonB-dependent Receptor Plug Domain ACRYD_0702 PF00593 TonB dependent receptor ACRYD_0706 PF02554 Carbon starvation protein CstA ACRYD_0706 PF13722 5TM C-terminal transporter carbon starvation CstA ACRYD_0707 PF05191 Adenylate kinase, active site lid ACRYD_0710 PF17158 Membrane-associated sensor, integral membrane domain ACRYD_0710 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_0711 PF00155 Aminotransferase class I and II ACRYD_0712 PF00465 Iron-containing alcohol dehydrogenase ACRYD_0713 PF02203 Tar ligand binding domain homologue ACRYD_0713 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0713 PF00672 HAMP domain ACRYD_0714 PF01168 Alanine racemase, N-terminal domain ACRYD_0714 PF00842 Alanine racemase, C-terminal domain ACRYD_0715 PF01541 GIY-YIG catalytic domain ACRYD_0715 PF08459 UvrC Helix-hairpin-helix N-terminal ACRYD_0715 PF02151 UvrB/uvrC motif ACRYD_0716 PF00672 HAMP domain ACRYD_0716 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0716 PF02203 Tar ligand binding domain homologue ACRYD_0717 PF00873 AcrB/AcrD/AcrF family ACRYD_0718 PF00529 HlyD membrane-fusion protein of T1SS ACRYD_0718 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACRYD_0721 PF00486 Transcriptional regulatory protein, C terminal ACRYD_0721 PF00072 Response regulator receiver domain ACRYD_0722 PF08448 PAS fold ACRYD_0722 PF08447 PAS fold ACRYD_0722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0723 PF01625 Peptide methionine sulfoxide reductase ACRYD_0723 PF08534 Redoxin ACRYD_0723 PF01641 SelR domain ACRYD_0724 PF00873 AcrB/AcrD/AcrF family ACRYD_0725 PF00873 AcrB/AcrD/AcrF family ACRYD_0726 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACRYD_0728 PF11849 Domain of unknown function (DUF3369) ACRYD_0729 PF00813 FliP family ACRYD_0730 PF03717 Penicillin-binding Protein dimerisation domain ACRYD_0730 PF00905 Penicillin binding protein transpeptidase domain ACRYD_0734 PF00005 ABC transporter ACRYD_0735 PF02390 Putative methyltransferase ACRYD_0737 PF00849 RNA pseudouridylate synthase ACRYD_0737 PF01479 S4 domain ACRYD_0738 PF01098 Cell cycle protein ACRYD_0740 PF00202 Aminotransferase class-III ACRYD_0741 PF06865 Pyrimidine/purine nucleoside phosphorylase ACRYD_0745 PF00753 Metallo-beta-lactamase superfamily ACRYD_0745 PF16123 Hydroxyacylglutathione hydrolase C-terminus ACRYD_0757 PF00174 Oxidoreductase molybdopterin binding domain ACRYD_0758 PF00999 Sodium/hydrogen exchanger family ACRYD_0758 PF02080 TrkA-C domain ACRYD_0758 PF02254 TrkA-N domain ACRYD_0759 PF00580 UvrD/REP helicase N-terminal domain ACRYD_0759 PF13361 UvrD-like helicase C-terminal domain ACRYD_0760 PF00586 AIR synthase related protein, N-terminal domain ACRYD_0760 PF02769 AIR synthase related protein, C-terminal domain ACRYD_0761 PF01841 Transglutaminase-like superfamily ACRYD_0765 PF02954 Bacterial regulatory protein, Fis family ACRYD_0765 PF00072 Response regulator receiver domain ACRYD_0765 PF00158 Sigma-54 interaction domain ACRYD_0766 PF08448 PAS fold ACRYD_0766 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0766 PF08447 PAS fold ACRYD_0772 PF13247 4Fe-4S dicluster domain ACRYD_0774 PF02634 FdhD/NarQ family ACRYD_0778 PF03453 MoeA N-terminal region (domain I and II) ACRYD_0778 PF03454 MoeA C-terminal region (domain IV) ACRYD_0778 PF00994 Probable molybdopterin binding domain ACRYD_0779 PF12849 PBP superfamily domain ACRYD_0780 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_0781 PF00005 ABC transporter ACRYD_0784 PF12823 Domain of unknown function (DUF3817) ACRYD_0786 PF05661 Protein of unknown function (DUF808) ACRYD_0787 PF01522 Polysaccharide deacetylase ACRYD_0789 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ACRYD_0789 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ACRYD_0794 PF00270 DEAD/DEAH box helicase ACRYD_0794 PF00271 Helicase conserved C-terminal domain ACRYD_0794 PF17764 3′ DNA-binding domain (3′BD) ACRYD_0794 PF18074 Primosomal protein N C-terminal domain ACRYD_0794 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACRYD_0795 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ACRYD_0795 PF14602 Hexapeptide repeat of succinyl-transferase ACRYD_0796 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ACRYD_0796 PF18381 YcaO cyclodehydratase C-terminal domain ACRYD_0797 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACRYD_0797 PF12833 Helix-turn-helix domain ACRYD_0797 PF02805 Metal binding domain of Ada ACRYD_0797 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACRYD_0798 PF00464 Serine hydroxymethyltransferase ACRYD_0801 PF00571 CBS domain ACRYD_0801 PF03471 Transporter associated domain ACRYD_0802 PF01594 AI-2E family transporter ACRYD_0807 PF01594 AI-2E family transporter ACRYD_0808 PF17864 RuvB AAA lid domain ACRYD_0808 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACRYD_0808 PF05491 RuvB C-terminal winged helix domain ACRYD_0809 PF02548 Ketopantoate hydroxymethyltransferase ACRYD_0810 PF00290 Tryptophan synthase alpha chain ACRYD_0811 PF04377 Arginine-tRNA-protein transferase, C terminus ACRYD_0811 PF04376 Arginine-tRNA-protein transferase, N terminus ACRYD_0813 PF07664 Ferrous iron transport protein B C terminus ACRYD_0813 PF07670 Nucleoside recognition ACRYD_0813 PF02421 Ferrous iron transport protein B ACRYD_0815 PF01475 Ferric uptake regulator family ACRYD_0816 PF00764 Arginosuccinate synthase ACRYD_0817 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_0817 PF12911 N-terminal TM domain of oligopeptide transport permease C ACRYD_0819 PF01966 HD domain ACRYD_0819 PF12072 Domain of unknown function (DUF3552) ACRYD_0819 PF00013 KH domain ACRYD_0820 PF01812 5-formyltetrahydrofolate cyclo-ligase family ACRYD_0822 PF00448 SRP54-type protein, GTPase domain ACRYD_0826 PF01638 HxlR-like helix-turn-helix ACRYD_0827 PF02525 Flavodoxin-like fold ACRYD_0828 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACRYD_0829 PF00881 Nitroreductase family ACRYD_0831 PF12848 ABC transporter ACRYD_0831 PF00005 ABC transporter ACRYD_0832 PF12826 Helix-hairpin-helix motif ACRYD_0832 PF03120 NAD-dependent DNA ligase OB-fold domain ACRYD_0832 PF01653 NAD-dependent DNA ligase adenylation domain ACRYD_0832 PF00533 BRCA1 C Terminus (BRCT) domain ACRYD_0833 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0833 PF02203 Tar ligand binding domain homologue ACRYD_0833 PF00672 HAMP domain ACRYD_0834 PF02203 Tar ligand binding domain homologue ACRYD_0834 PF00672 HAMP domain ACRYD_0834 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0835 PF03738 Glutathionylspermidine synthase preATP-grasp ACRYD_0837 PF00271 Helicase conserved C-terminal domain ACRYD_0837 PF00270 DEAD/DEAH box helicase ACRYD_0839 PF03412 Peptidase C39 family ACRYD_0839 PF00664 ABC transporter transmembrane region ACRYD_0839 PF00005 ABC transporter ACRYD_0840 PF13533 Biotin-lipoyl like ACRYD_0841 PF17874 MalT-like TPR region ACRYD_0841 PF00196 Bacterial regulatory proteins, luxR family ACRYD_0842 PF08501 Shikimate dehydrogenase substrate binding domain ACRYD_0844 PF02578 Multi-copper polyphenol oxidoreductase laccase ACRYD_0845 PF00551 Formyl transferase ACRYD_0845 PF01842 ACT domain ACRYD_0846 PF00588 SpoU rRNA Methylase family ACRYD_0847 PF05525 Branched-chain amino acid transport protein ACRYD_0851 PF00072 Response regulator receiver domain ACRYD_0851 PF00486 Transcriptional regulatory protein, C terminal ACRYD_0852 PF13426 PAS domain ACRYD_0852 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_0852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0852 PF00672 HAMP domain ACRYD_0856 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_0857 PF00550 Phosphopantetheine attachment site ACRYD_0860 PF03062 MBOAT, membrane-bound O-acyltransferase family ACRYD_0861 PF00501 AMP-binding enzyme ACRYD_0861 PF13193 AMP-binding enzyme C-terminal domain ACRYD_0864 PF00795 Carbon-nitrogen hydrolase ACRYD_0865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACRYD_0868 PF00171 Aldehyde dehydrogenase family ACRYD_0869 PF02581 Thiamine monophosphate synthase ACRYD_0869 PF08543 Phosphomethylpyrimidine kinase ACRYD_0873 PF13419 Haloacid dehalogenase-like hydrolase ACRYD_0874 PF03641 Possible lysine decarboxylase ACRYD_0878 PF01709 Transcriptional regulator ACRYD_0879 PF00005 ABC transporter ACRYD_0879 PF00664 ABC transporter transmembrane region ACRYD_0881 PF00072 Response regulator receiver domain ACRYD_0881 PF00486 Transcriptional regulatory protein, C terminal ACRYD_0882 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0884 PF08447 PAS fold ACRYD_0884 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0885 PF00672 HAMP domain ACRYD_0885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_0885 PF02203 Tar ligand binding domain homologue ACRYD_0886 PF01168 Alanine racemase, N-terminal domain ACRYD_0887 PF17820 PDZ domain ACRYD_0887 PF02163 Peptidase family M50 ACRYD_0888 PF01066 CDP-alcohol phosphatidyltransferase ACRYD_0890 PF00701 Dihydrodipicolinate synthetase family ACRYD_0891 PF05193 Peptidase M16 inactive domain ACRYD_0891 PF00675 Insulinase (Peptidase family M16) ACRYD_0892 PF01180 Dihydroorotate dehydrogenase ACRYD_0893 PF00005 ABC transporter ACRYD_0893 PF00664 ABC transporter transmembrane region ACRYD_0894 PF03023 Lipid II flippase MurJ ACRYD_0896 PF01475 Ferric uptake regulator family ACRYD_0897 PF02130 Uncharacterized protein family UPF0054 ACRYD_0899 PF18073 Rubredoxin metal binding domain ACRYD_0900 PF00476 DNA polymerase family A ACRYD_0900 PF01367 5'-3' exonuclease, C-terminal SAM fold ACRYD_0900 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACRYD_0901 PF01699 Sodium/calcium exchanger protein ACRYD_0905 PF06580 Histidine kinase ACRYD_0905 PF07694 5TMR of 5TMR-LYT ACRYD_0905 PF13492 GAF domain ACRYD_0905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0906 PF04397 LytTr DNA-binding domain ACRYD_0906 PF00072 Response regulator receiver domain ACRYD_0907 PF12792 CSS motif domain associated with EAL ACRYD_0907 PF00563 EAL domain ACRYD_0909 PF03109 ABC1 family ACRYD_0912 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ACRYD_0914 PF00762 Ferrochelatase ACRYD_0915 PF08212 Lipocalin-like domain ACRYD_0917 PF01370 NAD dependent epimerase/dehydratase family ACRYD_0917 PF08338 Domain of unknown function (DUF1731) ACRYD_0918 PF03441 FAD binding domain of DNA photolyase ACRYD_0918 PF00875 DNA photolyase ACRYD_0919 PF08463 EcoEI R protein C-terminal ACRYD_0919 PF00271 Helicase conserved C-terminal domain ACRYD_0919 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) ACRYD_0919 PF04851 Type III restriction enzyme, res subunit ACRYD_0921 PF13784 Fic/DOC family N-terminal ACRYD_0921 PF02661 Fic/DOC family ACRYD_0922 PF12161 HsdM N-terminal domain ACRYD_0922 PF02384 N-6 DNA Methylase ACRYD_0923 PF01420 Type I restriction modification DNA specificity domain ACRYD_0925 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACRYD_0926 PF00005 ABC transporter ACRYD_0926 PF17755 UvrA DNA-binding domain ACRYD_0926 PF17760 UvrA interaction domain ACRYD_0927 PF08448 PAS fold ACRYD_0927 PF00563 EAL domain ACRYD_0927 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_0930 PF00561 alpha/beta hydrolase fold ACRYD_0933 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ACRYD_0935 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ACRYD_0938 PF02540 NAD synthase ACRYD_0938 PF00958 GMP synthase C terminal domain ACRYD_0938 PF00117 Glutamine amidotransferase class-I ACRYD_0939 PF02910 Fumarate reductase flavoprotein C-term ACRYD_0939 PF00890 FAD binding domain ACRYD_0941 PF01863 Protein of unknown function DUF45 ACRYD_0942 PF00155 Aminotransferase class I and II ACRYD_0943 PF00072 Response regulator receiver domain ACRYD_0943 PF01966 HD domain ACRYD_0944 PF00211 Adenylate and Guanylate cyclase catalytic domain ACRYD_0949 PF00999 Sodium/hydrogen exchanger family ACRYD_0949 PF02254 TrkA-N domain ACRYD_0951 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0951 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_0951 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACRYD_0953 PF02600 Disulfide bond formation protein DsbB ACRYD_0956 PF08534 Redoxin ACRYD_0958 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACRYD_0959 PF00849 RNA pseudouridylate synthase ACRYD_0959 PF01479 S4 domain ACRYD_0960 PF13419 Haloacid dehalogenase-like hydrolase ACRYD_0964 PF00593 TonB dependent receptor ACRYD_0964 PF07715 TonB-dependent Receptor Plug Domain ACRYD_0965 PF01497 Periplasmic binding protein ACRYD_0966 PF00005 ABC transporter ACRYD_0967 PF01032 FecCD transport family ACRYD_0971 PF01761 3-dehydroquinate synthase ACRYD_0973 PF00919 Uncharacterized protein family UPF0004 ACRYD_0973 PF04055 Radical SAM superfamily ACRYD_0974 PF17862 AAA+ lid domain ACRYD_0974 PF06480 FtsH Extracellular ACRYD_0974 PF01434 Peptidase family M41 ACRYD_0974 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_0976 PF00994 Probable molybdopterin binding domain ACRYD_0977 PF02687 FtsX-like permease family ACRYD_0977 PF12704 MacB-like periplasmic core domain ACRYD_0978 PF00271 Helicase conserved C-terminal domain ACRYD_0978 PF02810 SEC-C motif ACRYD_0978 PF01043 SecA preprotein cross-linking domain ACRYD_0978 PF07516 SecA Wing and Scaffold domain ACRYD_0978 PF07517 SecA DEAD-like domain ACRYD_0979 PF03548 Outer membrane lipoprotein carrier protein LolA ACRYD_0981 PF07730 Histidine kinase ACRYD_0981 PF17200 Single Cache domain 2 ACRYD_0982 PF07687 Peptidase dimerisation domain ACRYD_0982 PF01546 Peptidase family M20/M25/M40 ACRYD_0983 PF05140 ResB-like family ACRYD_0983 PF01578 Cytochrome C assembly protein ACRYD_0984 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_0984 PF00072 Response regulator receiver domain ACRYD_0985 PF08003 Protein of unknown function (DUF1698) ACRYD_0986 PF00563 EAL domain ACRYD_0986 PF01590 GAF domain ACRYD_0986 PF00360 Phytochrome region ACRYD_0986 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_0988 PF00753 Metallo-beta-lactamase superfamily ACRYD_0993 PF01556 DnaJ C terminal domain ACRYD_0993 PF00226 DnaJ domain ACRYD_0993 PF00684 DnaJ central domain ACRYD_0994 PF00589 Phage integrase family ACRYD_0994 PF18644 Phage integrase SAM-like domain ACRYD_0995 PF01339 CheB methylesterase ACRYD_0995 PF00072 Response regulator receiver domain ACRYD_0996 PF03975 CheD chemotactic sensory transduction ACRYD_0997 PF03705 CheR methyltransferase, all-alpha domain ACRYD_0997 PF01739 CheR methyltransferase, SAM binding domain ACRYD_0998 PF02895 Signal transducing histidine kinase, homodimeric domain ACRYD_0998 PF01627 Hpt domain ACRYD_0998 PF01584 CheW-like domain ACRYD_0998 PF09078 CheY binding ACRYD_0998 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_0999 PF00072 Response regulator receiver domain ACRYD_1000 PF00013 KH domain ACRYD_1000 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACRYD_1000 PF01138 3' exoribonuclease family, domain 1 ACRYD_1000 PF03725 3' exoribonuclease family, domain 2 ACRYD_1000 PF00575 S1 RNA binding domain ACRYD_1002 PF03968 OstA-like protein ACRYD_1002 PF04453 LPS transport system D ACRYD_1004 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ACRYD_1004 PF02844 Phosphoribosylglycinamide synthetase, N domain ACRYD_1004 PF02843 Phosphoribosylglycinamide synthetase, C domain ACRYD_1006 PF01740 STAS domain ACRYD_1006 PF00916 Sulfate permease family ACRYD_1007 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACRYD_1007 PF01926 50S ribosome-binding GTPase ACRYD_1008 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ACRYD_1008 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ACRYD_1010 PF17854 FtsK alpha domain ACRYD_1010 PF09397 Ftsk gamma domain ACRYD_1010 PF01580 FtsK/SpoIIIE family ACRYD_1011 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_1011 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ACRYD_1012 PF10369 Small subunit of acetolactate synthase ACRYD_1013 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACRYD_1013 PF00205 Thiamine pyrophosphate enzyme, central domain ACRYD_1013 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACRYD_1015 PF02541 Ppx/GppA phosphatase family ACRYD_1016 PF01066 CDP-alcohol phosphatidyltransferase ACRYD_1020 PF01171 PP-loop family ACRYD_1022 PF00994 Probable molybdopterin binding domain ACRYD_1022 PF03454 MoeA C-terminal region (domain IV) ACRYD_1022 PF03453 MoeA N-terminal region (domain I and II) ACRYD_1024 PF04228 Putative neutral zinc metallopeptidase ACRYD_1025 PF02646 RmuC family ACRYD_1026 PF01435 Peptidase family M48 ACRYD_1026 PF16491 CAAX prenyl protease N-terminal, five membrane helices ACRYD_1027 PF13091 PLD-like domain ACRYD_1028 PF03061 Thioesterase superfamily ACRYD_1029 PF00589 Phage integrase family ACRYD_1047 PF00145 C-5 cytosine-specific DNA methylase ACRYD_1047 PF01381 Helix-turn-helix ACRYD_1050 PF01432 Peptidase family M3 ACRYD_1051 PF17827 PrmC N-terminal domain ACRYD_1051 PF05175 Methyltransferase small domain ACRYD_1052 PF04055 Radical SAM superfamily ACRYD_1052 PF06969 HemN C-terminal domain ACRYD_1053 PF00293 NUDIX domain ACRYD_1054 PF00696 Amino acid kinase family ACRYD_1054 PF01842 ACT domain ACRYD_1054 PF13840 ACT domain ACRYD_1057 PF00809 Pterin binding enzyme ACRYD_1060 PF03477 ATP cone domain ACRYD_1060 PF02867 Ribonucleotide reductase, barrel domain ACRYD_1060 PF00317 Ribonucleotide reductase, all-alpha domain ACRYD_1065 PF07568 Histidine kinase ACRYD_1065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1065 PF12282 Signal transduction histidine kinase ACRYD_1067 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACRYD_1067 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACRYD_1068 PF06969 HemN C-terminal domain ACRYD_1068 PF04055 Radical SAM superfamily ACRYD_1070 PF03594 Benzoate membrane transport protein ACRYD_1072 PF00202 Aminotransferase class-III ACRYD_1073 PF03473 MOSC domain ACRYD_1074 PF01113 Dihydrodipicolinate reductase, N-terminus ACRYD_1074 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ACRYD_1075 PF00005 ABC transporter ACRYD_1077 PF00571 CBS domain ACRYD_1077 PF03471 Transporter associated domain ACRYD_1077 PF01595 Cyclin M transmembrane N-terminal domain ACRYD_1078 PF00488 MutS domain V ACRYD_1078 PF01713 Smr domain ACRYD_1080 PF02618 YceG-like family ACRYD_1081 PF03971 Monomeric isocitrate dehydrogenase ACRYD_1082 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACRYD_1082 PF00056 lactate/malate dehydrogenase, NAD binding domain ACRYD_1088 PF01795 MraW methylase family ACRYD_1090 PF00216 Bacterial DNA-binding protein ACRYD_1100 PF01555 DNA methylase ACRYD_1106 PF00072 Response regulator receiver domain ACRYD_1108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1108 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_1108 PF00989 PAS fold ACRYD_1108 PF08447 PAS fold ACRYD_1109 PF00226 DnaJ domain ACRYD_1109 PF01556 DnaJ C terminal domain ACRYD_1110 PF13411 MerR HTH family regulatory protein ACRYD_1111 PF03741 Integral membrane protein TerC family ACRYD_1112 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ACRYD_1113 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_1114 PF02540 NAD synthase ACRYD_1117 PF05099 Tellurite resistance protein TerB ACRYD_1117 PF00226 DnaJ domain ACRYD_1118 PF13307 Helicase C-terminal domain ACRYD_1118 PF00929 Exonuclease ACRYD_1119 PF02547 Queuosine biosynthesis protein ACRYD_1120 PF00902 Sec-independent protein translocase protein (TatC) ACRYD_1121 PF02416 mttA/Hcf106 family ACRYD_1122 PF00248 Aldo/keto reductase family ACRYD_1126 PF02132 RecR protein ACRYD_1126 PF13662 Toprim domain ACRYD_1127 PF12848 ABC transporter ACRYD_1127 PF16326 ABC transporter C-terminal domain ACRYD_1127 PF00005 ABC transporter ACRYD_1128 PF09424 Yqey-like protein ACRYD_1129 PF04225 Opacity-associated protein A LysM-like domain ACRYD_1129 PF01551 Peptidase family M23 ACRYD_1131 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_1132 PF01361 Tautomerase enzyme ACRYD_1133 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYD_1133 PF03466 LysR substrate binding domain ACRYD_1134 PF00218 Indole-3-glycerol phosphate synthase ACRYD_1136 PF03692 Putative zinc- or iron-chelating domain ACRYD_1137 PF05175 Methyltransferase small domain ACRYD_1139 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ACRYD_1139 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ACRYD_1139 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACRYD_1140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACRYD_1142 PF00929 Exonuclease ACRYD_1142 PF14579 Helix-hairpin-helix motif ACRYD_1142 PF02811 PHP domain ACRYD_1142 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYD_1142 PF11490 DNA polymerase III polC-type N-terminus II ACRYD_1142 PF14480 DNA polymerase III polC-type N-terminus I ACRYD_1142 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYD_1143 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ACRYD_1144 PF00834 Ribulose-phosphate 3 epimerase family ACRYD_1145 PF02253 Phospholipase A1 ACRYD_1147 PF03841 L-seryl-tRNA selenium transferase ACRYD_1148 PF00009 Elongation factor Tu GTP binding domain ACRYD_1148 PF03144 Elongation factor Tu domain 2 ACRYD_1148 PF09105 Elongation factor SelB, winged helix ACRYD_1148 PF09107 Elongation factor SelB, winged helix ACRYD_1148 PF09106 Elongation factor SelB, winged helix ACRYD_1149 PF01568 Molydopterin dinucleotide binding domain ACRYD_1149 PF18364 Molybdopterin oxidoreductase N-terminal domain ACRYD_1149 PF00384 Molybdopterin oxidoreductase ACRYD_1152 PF02153 Prephenate dehydrogenase ACRYD_1152 PF01842 ACT domain ACRYD_1153 PF01103 Surface antigen ACRYD_1153 PF07244 Surface antigen variable number repeat ACRYD_1154 PF04055 Radical SAM superfamily ACRYD_1155 PF05193 Peptidase M16 inactive domain ACRYD_1156 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACRYD_1161 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ACRYD_1163 PF01588 Putative tRNA binding domain ACRYD_1163 PF09334 tRNA synthetases class I (M) ACRYD_1163 PF00133 tRNA synthetases class I (I, L, M and V) ACRYD_1166 PF01293 Phosphoenolpyruvate carboxykinase ACRYD_1169 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACRYD_1169 PF00925 GTP cyclohydrolase II ACRYD_1174 PF00293 NUDIX domain ACRYD_1175 PF04461 Protein of unknown function (DUF520) ACRYD_1176 PF04241 Protein of unknown function (DUF423) ACRYD_1177 PF00156 Phosphoribosyl transferase domain ACRYD_1178 PF11791 Aconitate B N-terminal domain ACRYD_1178 PF00330 Aconitase family (aconitate hydratase) ACRYD_1178 PF06434 Aconitate hydratase 2 N-terminus ACRYD_1180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYD_1182 PF00072 Response regulator receiver domain ACRYD_1182 PF00486 Transcriptional regulatory protein, C terminal ACRYD_1183 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1184 PF00893 Small Multidrug Resistance protein ACRYD_1192 PF01790 Prolipoprotein diacylglyceryl transferase ACRYD_1193 PF09411 Lipid A 3-O-deacylase (PagL) ACRYD_1195 PF01339 CheB methylesterase ACRYD_1195 PF00072 Response regulator receiver domain ACRYD_1197 PF02348 Cytidylyltransferase ACRYD_1198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1198 PF00072 Response regulator receiver domain ACRYD_1202 PF00005 ABC transporter ACRYD_1202 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACRYD_1203 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ACRYD_1204 PF02885 Glycosyl transferase family, helical bundle domain ACRYD_1204 PF00591 Glycosyl transferase family, a/b domain ACRYD_1206 PF00106 short chain dehydrogenase ACRYD_1209 PF00933 Glycosyl hydrolase family 3 N terminal domain ACRYD_1210 PF00226 DnaJ domain ACRYD_1210 PF01556 DnaJ C terminal domain ACRYD_1210 PF00684 DnaJ central domain ACRYD_1211 PF01556 DnaJ C terminal domain ACRYD_1211 PF00684 DnaJ central domain ACRYD_1211 PF00226 DnaJ domain ACRYD_1213 PF02203 Tar ligand binding domain homologue ACRYD_1213 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_1213 PF00672 HAMP domain ACRYD_1214 PF03061 Thioesterase superfamily ACRYD_1215 PF00571 CBS domain ACRYD_1215 PF00478 IMP dehydrogenase / GMP reductase domain ACRYD_1216 PF01425 Amidase ACRYD_1217 PF01196 Ribosomal protein L17 ACRYD_1218 PF01000 RNA polymerase Rpb3/RpoA insert domain ACRYD_1218 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACRYD_1218 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACRYD_1219 PF00163 Ribosomal protein S4/S9 N-terminal domain ACRYD_1219 PF01479 S4 domain ACRYD_1220 PF00411 Ribosomal protein S11 ACRYD_1221 PF00416 Ribosomal protein S13/S18 ACRYD_1222 PF00444 Ribosomal protein L36 ACRYD_1225 PF00180 Isocitrate/isopropylmalate dehydrogenase ACRYD_1226 PF00694 Aconitase C-terminal domain ACRYD_1227 PF00140 Sigma-70 factor, region 1.2 ACRYD_1227 PF04539 Sigma-70 region 3 ACRYD_1227 PF04545 Sigma-70, region 4 ACRYD_1227 PF04542 Sigma-70 region 2 ACRYD_1228 PF02092 Glycyl-tRNA synthetase beta subunit ACRYD_1232 PF02527 rRNA small subunit methyltransferase G ACRYD_1233 PF00925 GTP cyclohydrolase II ACRYD_1234 PF00490 Delta-aminolevulinic acid dehydratase ACRYD_1240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACRYD_1240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACRYD_1240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACRYD_1240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACRYD_1241 PF00483 Nucleotidyl transferase ACRYD_1242 PF00342 Phosphoglucose isomerase ACRYD_1245 PF02719 Polysaccharide biosynthesis protein ACRYD_1246 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ACRYD_1248 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_1249 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_1249 PF17836 PglD N-terminal domain ACRYD_1250 PF02397 Bacterial sugar transferase ACRYD_1253 PF02350 UDP-N-acetylglucosamine 2-epimerase ACRYD_1255 PF00977 Histidine biosynthesis protein ACRYD_1256 PF00117 Glutamine amidotransferase class-I ACRYD_1257 PF00733 Asparagine synthase ACRYD_1257 PF13537 Glutamine amidotransferase domain ACRYD_1258 PF00117 Glutamine amidotransferase class-I ACRYD_1258 PF00958 GMP synthase C terminal domain ACRYD_1258 PF02540 NAD synthase ACRYD_1263 PF13537 Glutamine amidotransferase domain ACRYD_1263 PF00733 Asparagine synthase ACRYD_1265 PF00459 Inositol monophosphatase family ACRYD_1267 PF02080 TrkA-C domain ACRYD_1267 PF03600 Citrate transporter ACRYD_1268 PF00009 Elongation factor Tu GTP binding domain ACRYD_1269 PF01507 Phosphoadenosine phosphosulfate reductase family ACRYD_1270 PF01757 Acyltransferase family ACRYD_1271 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_1272 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_1274 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACRYD_1274 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACRYD_1275 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACRYD_1275 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACRYD_1275 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACRYD_1281 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACRYD_1281 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACRYD_1281 PF02142 MGS-like domain ACRYD_1283 PF00561 alpha/beta hydrolase fold ACRYD_1285 PF04143 Sulphur transport ACRYD_1286 PF00091 Tubulin/FtsZ family, GTPase domain ACRYD_1286 PF12327 FtsZ family, C-terminal domain ACRYD_1287 PF02491 SHS2 domain inserted in FTSA ACRYD_1289 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain ACRYD_1289 PF14490 Helix-hairpin-helix containing domain ACRYD_1289 PF13538 UvrD-like helicase C-terminal domain ACRYD_1291 PF11798 IMS family HHH motif ACRYD_1291 PF00817 impB/mucB/samB family ACRYD_1291 PF11799 impB/mucB/samB family C-terminal domain ACRYD_1293 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ACRYD_1293 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYD_1293 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACRYD_1294 PF16326 ABC transporter C-terminal domain ACRYD_1294 PF12848 ABC transporter ACRYD_1294 PF00005 ABC transporter ACRYD_1295 PF04055 Radical SAM superfamily ACRYD_1296 PF03099 Biotin/lipoate A/B protein ligase family ACRYD_1296 PF10437 Bacterial lipoate protein ligase C-terminus ACRYD_1297 PF00456 Transketolase, thiamine diphosphate binding domain ACRYD_1297 PF17831 Pyruvate dehydrogenase E1 component middle domain ACRYD_1298 PF02817 e3 binding domain ACRYD_1298 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACRYD_1298 PF00364 Biotin-requiring enzyme ACRYD_1299 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYD_1299 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACRYD_1301 PF00905 Penicillin binding protein transpeptidase domain ACRYD_1302 PF00403 Heavy-metal-associated domain ACRYD_1303 PF00270 DEAD/DEAH box helicase ACRYD_1303 PF00271 Helicase conserved C-terminal domain ACRYD_1306 PF00672 HAMP domain ACRYD_1306 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_1306 PF02203 Tar ligand binding domain homologue ACRYD_1307 PF00075 RNase H ACRYD_1308 PF00682 HMGL-like ACRYD_1310 PF01312 FlhB HrpN YscU SpaS Family ACRYD_1312 PF00583 Acetyltransferase (GNAT) family ACRYD_1313 PF01926 50S ribosome-binding GTPase ACRYD_1317 PF00475 Imidazoleglycerol-phosphate dehydratase ACRYD_1318 PF05036 Sporulation related domain ACRYD_1318 PF03330 Lytic transglycolase ACRYD_1320 PF01026 TatD related DNase ACRYD_1322 PF07724 AAA domain (Cdc48 subfamily) ACRYD_1322 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYD_1323 PF00227 Proteasome subunit ACRYD_1324 PF01281 Ribosomal protein L9, N-terminal domain ACRYD_1324 PF03948 Ribosomal protein L9, C-terminal domain ACRYD_1326 PF02441 Flavoprotein ACRYD_1327 PF01467 Cytidylyltransferase-like ACRYD_1328 PF02223 Thymidylate kinase ACRYD_1329 PF03129 Anticodon binding domain ACRYD_1329 PF13393 Histidyl-tRNA synthetase ACRYD_1330 PF17810 Arginine decarboxylase helical bundle domain ACRYD_1330 PF17944 Arginine decarboxylase C-terminal helical extension ACRYD_1330 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACRYD_1331 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_1331 PF06426 Serine acetyltransferase, N-terminal ACRYD_1332 PF01925 Sulfite exporter TauE/SafE ACRYD_1335 PF06865 Pyrimidine/purine nucleoside phosphorylase ACRYD_1338 PF08668 HDOD domain ACRYD_1339 PF01926 50S ribosome-binding GTPase ACRYD_1339 PF06071 Protein of unknown function (DUF933) ACRYD_1342 PF00085 Thioredoxin ACRYD_1343 PF00578 AhpC/TSA family ACRYD_1343 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACRYD_1344 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_1344 PF02203 Tar ligand binding domain homologue ACRYD_1344 PF00672 HAMP domain ACRYD_1345 PF00672 HAMP domain ACRYD_1345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1345 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_1345 PF01627 Hpt domain ACRYD_1345 PF00072 Response regulator receiver domain ACRYD_1345 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACRYD_1346 PF00072 Response regulator receiver domain ACRYD_1347 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_1348 PF00072 Response regulator receiver domain ACRYD_1348 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACRYD_1348 PF00672 HAMP domain ACRYD_1348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1348 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_1348 PF01627 Hpt domain ACRYD_1349 PF03601 Conserved hypothetical protein 698 ACRYD_1350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYD_1350 PF03466 LysR substrate binding domain ACRYD_1351 PF00891 O-methyltransferase domain ACRYD_1352 PF08386 TAP-like protein ACRYD_1352 PF00561 alpha/beta hydrolase fold ACRYD_1355 PF00109 Beta-ketoacyl synthase, N-terminal domain ACRYD_1355 PF02801 Beta-ketoacyl synthase, C-terminal domain ACRYD_1356 PF01494 FAD binding domain ACRYD_1357 PF00550 Phosphopantetheine attachment site ACRYD_1361 PF00221 Aromatic amino acid lyase ACRYD_1367 PF00005 ABC transporter ACRYD_1370 PF02801 Beta-ketoacyl synthase, C-terminal domain ACRYD_1370 PF00109 Beta-ketoacyl synthase, N-terminal domain ACRYD_1374 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACRYD_1374 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACRYD_1377 PF04055 Radical SAM superfamily ACRYD_1377 PF08497 Radical SAM N-terminal ACRYD_1379 PF02938 GAD domain ACRYD_1379 PF00152 tRNA synthetases class II (D, K and N) ACRYD_1379 PF01336 OB-fold nucleic acid binding domain ACRYD_1381 PF03167 Uracil DNA glycosylase superfamily ACRYD_1382 PF01176 Translation initiation factor 1A / IF-1 ACRYD_1383 PF00557 Metallopeptidase family M24 ACRYD_1384 PF00344 SecY translocase ACRYD_1385 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACRYD_1386 PF03719 Ribosomal protein S5, C-terminal domain ACRYD_1386 PF00333 Ribosomal protein S5, N-terminal domain ACRYD_1387 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACRYD_1388 PF00347 Ribosomal protein L6 ACRYD_1389 PF00410 Ribosomal protein S8 ACRYD_1390 PF00253 Ribosomal protein S14p/S29e ACRYD_1391 PF00281 Ribosomal protein L5 ACRYD_1391 PF00673 ribosomal L5P family C-terminus ACRYD_1392 PF00467 KOW motif ACRYD_1392 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACRYD_1393 PF00238 Ribosomal protein L14p/L23e ACRYD_1394 PF00366 Ribosomal protein S17 ACRYD_1395 PF00831 Ribosomal L29 protein ACRYD_1396 PF00252 Ribosomal protein L16p/L10e ACRYD_1397 PF07650 KH domain ACRYD_1397 PF00189 Ribosomal protein S3, C-terminal domain ACRYD_1398 PF00237 Ribosomal protein L22p/L17e ACRYD_1399 PF00203 Ribosomal protein S19 ACRYD_1400 PF00181 Ribosomal Proteins L2, RNA binding domain ACRYD_1400 PF03947 Ribosomal Proteins L2, C-terminal domain ACRYD_1401 PF00276 Ribosomal protein L23 ACRYD_1402 PF00573 Ribosomal protein L4/L1 family ACRYD_1403 PF00297 Ribosomal protein L3 ACRYD_1404 PF00338 Ribosomal protein S10p/S20e ACRYD_1408 PF03372 Endonuclease/Exonuclease/phosphatase family ACRYD_1409 PF02926 THUMP domain ACRYD_1409 PF02568 Thiamine biosynthesis protein (ThiI) ACRYD_1416 PF00665 Integrase core domain ACRYD_1420 PF00009 Elongation factor Tu GTP binding domain ACRYD_1420 PF11987 Translation-initiation factor 2 ACRYD_1420 PF04760 Translation initiation factor IF-2, N-terminal region ACRYD_1421 PF12008 Type I restriction and modification enzyme - subunit R C terminal ACRYD_1421 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACRYD_1421 PF18766 SWI2/SNF2 ATPase ACRYD_1423 PF00912 Transglycosylase ACRYD_1426 PF12161 HsdM N-terminal domain ACRYD_1426 PF02384 N-6 DNA Methylase ACRYD_1436 PF02086 D12 class N6 adenine-specific DNA methyltransferase ACRYD_1441 PF02203 Tar ligand binding domain homologue ACRYD_1441 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_1441 PF00672 HAMP domain ACRYD_1442 PF08447 PAS fold ACRYD_1442 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_1444 PF01327 Polypeptide deformylase ACRYD_1445 PF00574 Clp protease ACRYD_1446 PF05697 Bacterial trigger factor protein (TF) ACRYD_1446 PF05698 Bacterial trigger factor protein (TF) C-terminus ACRYD_1446 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACRYD_1447 PF03976 Polyphosphate kinase 2 (PPK2) ACRYD_1448 PF03976 Polyphosphate kinase 2 (PPK2) ACRYD_1449 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACRYD_1450 PF16653 Saccharopine dehydrogenase C-terminal domain ACRYD_1450 PF03435 Saccharopine dehydrogenase NADP binding domain ACRYD_1451 PF02698 DUF218 domain ACRYD_1452 PF01875 Memo-like protein ACRYD_1455 PF00034 Cytochrome c ACRYD_1456 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACRYD_1458 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYD_1459 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYD_1462 PF04055 Radical SAM superfamily ACRYD_1462 PF13186 Iron-sulfur cluster-binding domain ACRYD_1464 PF10414 Sirohaem synthase dimerisation region ACRYD_1464 PF14824 Sirohaem biosynthesis protein central ACRYD_1464 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACRYD_1466 PF10414 Sirohaem synthase dimerisation region ACRYD_1466 PF14824 Sirohaem biosynthesis protein central ACRYD_1466 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACRYD_1467 PF17805 AsnC-like ligand binding domain ACRYD_1470 PF00762 Ferrochelatase ACRYD_1471 PF00005 ABC transporter ACRYD_1473 PF00313 'Cold-shock' DNA-binding domain ACRYD_1474 PF00149 Calcineurin-like phosphoesterase ACRYD_1476 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACRYD_1476 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACRYD_1476 PF02770 Acyl-CoA dehydrogenase, middle domain ACRYD_1482 PF00403 Heavy-metal-associated domain ACRYD_1483 PF00563 EAL domain ACRYD_1483 PF08495 FIST N domain ACRYD_1483 PF10442 FIST C domain ACRYD_1483 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_1484 PF00625 Guanylate kinase ACRYD_1486 PF00005 ABC transporter ACRYD_1487 PF00889 Elongation factor TS ACRYD_1488 PF00318 Ribosomal protein S2 ACRYD_1489 PF02875 Mur ligase family, glutamate ligase domain ACRYD_1489 PF08245 Mur ligase middle domain ACRYD_1493 PF08264 Anticodon-binding domain of tRNA ACRYD_1493 PF00133 tRNA synthetases class I (I, L, M and V) ACRYD_1494 PF06039 Malate:quinone oxidoreductase (Mqo) ACRYD_1495 PF18146 Damage-inducible protein CinA KH domain ACRYD_1495 PF00994 Probable molybdopterin binding domain ACRYD_1495 PF02464 Competence-damaged protein ACRYD_1504 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_1504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1505 PF00072 Response regulator receiver domain ACRYD_1505 PF00486 Transcriptional regulatory protein, C terminal ACRYD_1507 PF00474 Sodium:solute symporter family ACRYD_1509 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYD_1509 PF11490 DNA polymerase III polC-type N-terminus II ACRYD_1509 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYD_1509 PF00929 Exonuclease ACRYD_1509 PF02811 PHP domain ACRYD_1509 PF14579 Helix-hairpin-helix motif ACRYD_1511 PF00474 Sodium:solute symporter family ACRYD_1513 PF00474 Sodium:solute symporter family ACRYD_1515 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYD_1515 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYD_1515 PF14579 Helix-hairpin-helix motif ACRYD_1515 PF02811 PHP domain ACRYD_1515 PF00929 Exonuclease ACRYD_1517 PF00871 Acetokinase family ACRYD_1518 PF01515 Phosphate acetyl/butaryl transferase ACRYD_1519 PF00871 Acetokinase family ACRYD_1520 PF01343 Peptidase family S49 ACRYD_1521 PF01979 Amidohydrolase family ACRYD_1522 PF01220 Dehydroquinase class II ACRYD_1523 PF01321 Creatinase/Prolidase N-terminal domain ACRYD_1523 PF00557 Metallopeptidase family M24 ACRYD_1524 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACRYD_1528 PF14572 Phosphoribosyl synthetase-associated domain ACRYD_1528 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACRYD_1529 PF00691 OmpA family ACRYD_1529 PF05736 OprF membrane domain ACRYD_1530 PF06421 GTP-binding protein LepA C-terminus ACRYD_1530 PF00679 Elongation factor G C-terminus ACRYD_1530 PF00009 Elongation factor Tu GTP binding domain ACRYD_1530 PF03144 Elongation factor Tu domain 2 ACRYD_1531 PF00156 Phosphoribosyl transferase domain ACRYD_1532 PF00117 Glutamine amidotransferase class-I ACRYD_1533 PF00977 Histidine biosynthesis protein ACRYD_1534 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_1534 PF00072 Response regulator receiver domain ACRYD_1536 PF01914 MarC family integral membrane protein ACRYD_1537 PF05188 MutS domain II ACRYD_1537 PF05192 MutS domain III ACRYD_1537 PF05190 MutS family domain IV ACRYD_1537 PF00488 MutS domain V ACRYD_1537 PF01624 MutS domain I ACRYD_1540 PF00682 HMGL-like ACRYD_1540 PF08502 LeuA allosteric (dimerisation) domain ACRYD_1541 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_1541 PF17862 AAA+ lid domain ACRYD_1541 PF01434 Peptidase family M41 ACRYD_1543 PF01207 Dihydrouridine synthase (Dus) ACRYD_1545 PF02590 Predicted SPOUT methyltransferase ACRYD_1546 PF02581 Thiamine monophosphate synthase ACRYD_1547 PF01039 Carboxyl transferase domain ACRYD_1547 PF17848 Acetyl-coA carboxylase zinc finger domain ACRYD_1548 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACRYD_1548 PF02772 S-adenosylmethionine synthetase, central domain ACRYD_1548 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACRYD_1549 PF01380 SIS domain ACRYD_1550 PF00459 Inositol monophosphatase family ACRYD_1552 PF02203 Tar ligand binding domain homologue ACRYD_1552 PF00672 HAMP domain ACRYD_1552 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_1560 PF02789 Cytosol aminopeptidase family, N-terminal domain ACRYD_1560 PF00883 Cytosol aminopeptidase family, catalytic domain ACRYD_1562 PF00291 Pyridoxal-phosphate dependent enzyme ACRYD_1563 PF00156 Phosphoribosyl transferase domain ACRYD_1564 PF14743 DNA ligase OB-like domain ACRYD_1564 PF01068 ATP dependent DNA ligase domain ACRYD_1566 PF01053 Cys/Met metabolism PLP-dependent enzyme ACRYD_1567 PF01053 Cys/Met metabolism PLP-dependent enzyme ACRYD_1572 PF06965 Na+/H+ antiporter 1 ACRYD_1581 PF00696 Amino acid kinase family ACRYD_1582 PF01192 RNA polymerase Rpb6 ACRYD_1583 PF13291 ACT domain ACRYD_1583 PF04607 Region found in RelA / SpoT proteins ACRYD_1583 PF02824 TGS domain ACRYD_1584 PF01479 S4 domain ACRYD_1584 PF00579 tRNA synthetases class I (W and Y) ACRYD_1586 PF01520 N-acetylmuramoyl-L-alanine amidase ACRYD_1588 PF01195 Peptidyl-tRNA hydrolase ACRYD_1589 PF14693 Ribosomal protein TL5, C-terminal domain ACRYD_1589 PF01386 Ribosomal L25p family ACRYD_1590 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACRYD_1590 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACRYD_1591 PF10502 Signal peptidase, peptidase S26 ACRYD_1592 PF02502 Ribose/Galactose Isomerase ACRYD_1601 PF00563 EAL domain ACRYD_1601 PF10442 FIST C domain ACRYD_1601 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_1601 PF08495 FIST N domain ACRYD_1602 PF01243 Pyridoxamine 5'-phosphate oxidase ACRYD_1602 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ACRYD_1603 PF16916 Dimerisation domain of Zinc Transporter ACRYD_1603 PF01545 Cation efflux family ACRYD_1604 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_1604 PF03707 Bacterial signalling protein N terminal repeat ACRYD_1604 PF00563 EAL domain ACRYD_1605 PF03880 DbpA RNA binding domain ACRYD_1605 PF00270 DEAD/DEAH box helicase ACRYD_1605 PF00271 Helicase conserved C-terminal domain ACRYD_1609 PF00183 Hsp90 protein ACRYD_1610 PF00563 EAL domain ACRYD_1610 PF01590 GAF domain ACRYD_1610 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_1610 PF00360 Phytochrome region ACRYD_1611 PF00672 HAMP domain ACRYD_1611 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACRYD_1611 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1611 PF00072 Response regulator receiver domain ACRYD_1611 PF01627 Hpt domain ACRYD_1611 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_1614 PF00491 Arginase family ACRYD_1616 PF08713 DNA alkylation repair enzyme ACRYD_1617 PF04073 Aminoacyl-tRNA editing domain ACRYD_1624 PF04403 Paraquat-inducible protein A ACRYD_1625 PF02470 MlaD protein ACRYD_1626 PF00199 Catalase ACRYD_1626 PF06628 Catalase-related immune-responsive ACRYD_1627 PF12796 Ankyrin repeats (3 copies) ACRYD_1627 PF00023 Ankyrin repeat ACRYD_1629 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACRYD_1629 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACRYD_1630 PF00682 HMGL-like ACRYD_1630 PF08502 LeuA allosteric (dimerisation) domain ACRYD_1631 PF12833 Helix-turn-helix domain ACRYD_1632 PF13673 Acetyltransferase (GNAT) domain ACRYD_1632 PF13302 Acetyltransferase (GNAT) domain ACRYD_1632 PF03352 Methyladenine glycosylase ACRYD_1632 PF00117 Glutamine amidotransferase class-I ACRYD_1632 PF00958 GMP synthase C terminal domain ACRYD_1633 PF00924 Mechanosensitive ion channel ACRYD_1634 PF02833 DHHA2 domain ACRYD_1634 PF01368 DHH family ACRYD_1637 PF00206 Lyase ACRYD_1637 PF10415 Fumarase C C-terminus ACRYD_1638 PF01048 Phosphorylase superfamily ACRYD_1639 PF00698 Acyl transferase domain ACRYD_1640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACRYD_1643 PF04052 TolB amino-terminal domain ACRYD_1645 PF02472 Biopolymer transport protein ExbD/TolR ACRYD_1646 PF01618 MotA/TolQ/ExbB proton channel family ACRYD_1647 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACRYD_1648 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACRYD_1648 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYD_1649 PF00231 ATP synthase ACRYD_1650 PF00306 ATP synthase alpha/beta chain, C terminal domain ACRYD_1650 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACRYD_1650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYD_1651 PF00213 ATP synthase delta (OSCP) subunit ACRYD_1652 PF00430 ATP synthase B/B' CF(0) ACRYD_1654 PF17762 HTH domain found in ParB protein ACRYD_1654 PF02195 ParB-like nuclease domain ACRYD_1655 PF13614 AAA domain ACRYD_1658 PF08447 PAS fold ACRYD_1658 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_1659 PF02911 Formyl transferase, C-terminal domain ACRYD_1659 PF00551 Formyl transferase ACRYD_1660 PF00696 Amino acid kinase family ACRYD_1661 PF01926 50S ribosome-binding GTPase ACRYD_1661 PF01018 GTP1/OBG ACRYD_1662 PF01016 Ribosomal L27 protein ACRYD_1663 PF00829 Ribosomal prokaryotic L21 protein ACRYD_1664 PF01807 CHC2 zinc finger ACRYD_1664 PF08275 DNA primase catalytic core, N-terminal domain ACRYD_1664 PF13662 Toprim domain ACRYD_1664 PF16730 DnaG-primase C-terminal, helicase-binding domain ACRYD_1666 PF00035 Double-stranded RNA binding motif ACRYD_1666 PF14622 Ribonuclease-III-like ACRYD_1667 PF01264 Chorismate synthase ACRYD_1669 PF03976 Polyphosphate kinase 2 (PPK2) ACRYD_1672 PF01625 Peptide methionine sulfoxide reductase ACRYD_1674 PF00202 Aminotransferase class-III ACRYD_1675 PF08448 PAS fold ACRYD_1675 PF08447 PAS fold ACRYD_1675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1676 PF01808 AICARFT/IMPCHase bienzyme ACRYD_1676 PF02142 MGS-like domain ACRYD_1677 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ACRYD_1677 PF00586 AIR synthase related protein, N-terminal domain ACRYD_1677 PF02769 AIR synthase related protein, C-terminal domain ACRYD_1679 PF10145 Phage-related minor tail protein ACRYD_1679 PF01551 Peptidase family M23 ACRYD_1679 PF01464 Transglycosylase SLT domain ACRYD_1680 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACRYD_1680 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACRYD_1683 PF16921 Tex protein YqgF-like domain ACRYD_1683 PF00575 S1 RNA binding domain ACRYD_1683 PF09371 Tex-like protein N-terminal domain ACRYD_1683 PF17674 HHH domain ACRYD_1684 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ACRYD_1685 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACRYD_1686 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACRYD_1687 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACRYD_1687 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACRYD_1689 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACRYD_1689 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACRYD_1689 PF10531 SLBB domain ACRYD_1690 PF00285 Citrate synthase, C-terminal domain ACRYD_1691 PF00384 Molybdopterin oxidoreductase ACRYD_1691 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACRYD_1691 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ACRYD_1692 PF00146 NADH dehydrogenase ACRYD_1693 PF12838 4Fe-4S dicluster domain ACRYD_1694 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACRYD_1695 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACRYD_1696 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACRYD_1696 PF00361 Proton-conducting membrane transporter ACRYD_1697 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ACRYD_1697 PF00361 Proton-conducting membrane transporter ACRYD_1698 PF00361 Proton-conducting membrane transporter ACRYD_1699 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ACRYD_1700 PF00890 FAD binding domain ACRYD_1700 PF02910 Fumarate reductase flavoprotein C-term ACRYD_1701 PF13085 2Fe-2S iron-sulfur cluster binding domain ACRYD_1701 PF13183 4Fe-4S dicluster domain ACRYD_1702 PF00350 Dynamin family ACRYD_1703 PF00350 Dynamin family ACRYD_1705 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACRYD_1705 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACRYD_1706 PF02504 Fatty acid synthesis protein ACRYD_1707 PF01783 Ribosomal L32p protein family ACRYD_1709 PF00334 Nucleoside diphosphate kinase ACRYD_1711 PF00578 AhpC/TSA family ACRYD_1711 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACRYD_1712 PF07498 Rho termination factor, N-terminal domain ACRYD_1712 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYD_1712 PF07497 Rho termination factor, RNA-binding domain ACRYD_1713 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACRYD_1713 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACRYD_1714 PF01177 Asp/Glu/Hydantoin racemase ACRYD_1715 PF12169 DNA polymerase III subunits gamma and tau domain III ACRYD_1715 PF12170 DNA polymerase III tau subunit V interacting with alpha ACRYD_1717 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ACRYD_1717 PF03900 Porphobilinogen deaminase, C-terminal domain ACRYD_1718 PF00857 Isochorismatase family ACRYD_1723 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ACRYD_1723 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYD_1726 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACRYD_1727 PF01668 SmpB protein ACRYD_1728 PF00288 GHMP kinases N terminal domain ACRYD_1729 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACRYD_1730 PF13361 UvrD-like helicase C-terminal domain ACRYD_1730 PF00580 UvrD/REP helicase N-terminal domain ACRYD_1731 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYD_1731 PF03466 LysR substrate binding domain ACRYD_1732 PF04055 Radical SAM superfamily ACRYD_1732 PF16199 Radical_SAM C-terminal domain ACRYD_1733 PF13537 Glutamine amidotransferase domain ACRYD_1733 PF00156 Phosphoribosyl transferase domain ACRYD_1734 PF05173 Dihydrodipicolinate reductase, C-terminus ACRYD_1734 PF01113 Dihydrodipicolinate reductase, N-terminus ACRYD_1735 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYD_1736 PF00085 Thioredoxin ACRYD_1737 PF01411 tRNA synthetases class II (A) ACRYD_1737 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACRYD_1737 PF02272 DHHA1 domain ACRYD_1743 PF00072 Response regulator receiver domain ACRYD_1743 PF00486 Transcriptional regulatory protein, C terminal ACRYD_1744 PF13180 PDZ domain ACRYD_1744 PF17820 PDZ domain ACRYD_1745 PF00920 Dehydratase family ACRYD_1751 PF00005 ABC transporter ACRYD_1751 PF09383 NIL domain ACRYD_1754 PF01142 tRNA pseudouridine synthase D (TruD) ACRYD_1757 PF03572 Peptidase family S41 ACRYD_1757 PF13180 PDZ domain ACRYD_1758 PF01259 SAICAR synthetase ACRYD_1759 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ACRYD_1762 PF01553 Acyltransferase ACRYD_1763 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ACRYD_1764 PF02416 mttA/Hcf106 family ACRYD_1765 PF02416 mttA/Hcf106 family ACRYD_1766 PF03485 Arginyl tRNA synthetase N terminal domain ACRYD_1766 PF05746 DALR anticodon binding domain ACRYD_1766 PF00750 tRNA synthetases class I (R) ACRYD_1768 PF01467 Cytidylyltransferase-like ACRYD_1769 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACRYD_1769 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACRYD_1770 PF00162 Phosphoglycerate kinase ACRYD_1771 PF00121 Triosephosphate isomerase ACRYD_1773 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACRYD_1773 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACRYD_1774 PF01842 ACT domain ACRYD_1774 PF00800 Prephenate dehydratase ACRYD_1774 PF01817 Chorismate mutase type II ACRYD_1775 PF00155 Aminotransferase class I and II ACRYD_1776 PF02780 Transketolase, C-terminal domain ACRYD_1776 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ACRYD_1776 PF02779 Transketolase, pyrimidine binding domain ACRYD_1777 PF03150 Di-haem cytochrome c peroxidase ACRYD_1777 PF00034 Cytochrome c ACRYD_1779 PF02545 Maf-like protein ACRYD_1781 PF00877 NlpC/P60 family ACRYD_1783 PF00939 Sodium:sulfate symporter transmembrane region ACRYD_1785 PF00085 Thioredoxin ACRYD_1785 PF11412 Disulphide bond corrector protein DsbC ACRYD_1785 PF02683 Cytochrome C biogenesis protein transmembrane region ACRYD_1786 PF00085 Thioredoxin ACRYD_1787 PF18030 RimK PreATP-grasp domain ACRYD_1787 PF08443 RimK-like ATP-grasp domain ACRYD_1790 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_1790 PF08495 FIST N domain ACRYD_1790 PF00563 EAL domain ACRYD_1790 PF10442 FIST C domain ACRYD_1791 PF02666 Phosphatidylserine decarboxylase ACRYD_1793 PF04055 Radical SAM superfamily ACRYD_1795 PF00484 Carbonic anhydrase ACRYD_1796 PF00155 Aminotransferase class I and II ACRYD_1797 PF02021 Uncharacterised protein family UPF0102 ACRYD_1799 PF00391 PEP-utilising enzyme, mobile domain ACRYD_1799 PF00224 Pyruvate kinase, barrel domain ACRYD_1799 PF02887 Pyruvate kinase, alpha/beta domain ACRYD_1801 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_1801 PF13426 PAS domain ACRYD_1801 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1801 PF00672 HAMP domain ACRYD_1802 PF00072 Response regulator receiver domain ACRYD_1802 PF00486 Transcriptional regulatory protein, C terminal ACRYD_1804 PF02561 Flagellar protein FliS ACRYD_1805 PF07196 Flagellin hook IN motif ACRYD_1805 PF07195 Flagellar hook-associated protein 2 C-terminus ACRYD_1805 PF02465 Flagellar hook-associated protein 2 N-terminus ACRYD_1807 PF02107 Flagellar L-ring protein ACRYD_1812 PF01313 Bacterial export proteins, family 3 ACRYD_1814 PF02119 Flagellar P-ring protein ACRYD_1815 PF02154 Flagellar motor switch protein FliM ACRYD_1815 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACRYD_1817 PF00543 Nitrogen regulatory protein P-II ACRYD_1818 PF00909 Ammonium Transporter Family ACRYD_1819 PF12796 Ankyrin repeats (3 copies) ACRYD_1819 PF13606 Ankyrin repeat ACRYD_1820 PF01966 HD domain ACRYD_1820 PF08335 GlnD PII-uridylyltransferase ACRYD_1822 PF02040 Arsenical pump membrane protein ACRYD_1825 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ACRYD_1828 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACRYD_1830 PF02779 Transketolase, pyrimidine binding domain ACRYD_1830 PF02780 Transketolase, C-terminal domain ACRYD_1830 PF00456 Transketolase, thiamine diphosphate binding domain ACRYD_1832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1832 PF08448 PAS fold ACRYD_1832 PF08447 PAS fold ACRYD_1833 PF00672 HAMP domain ACRYD_1833 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_1833 PF02203 Tar ligand binding domain homologue ACRYD_1834 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACRYD_1837 PF00682 HMGL-like ACRYD_1837 PF02436 Conserved carboxylase domain ACRYD_1843 PF05690 Thiazole biosynthesis protein ThiG ACRYD_1844 PF03091 CutA1 divalent ion tolerance protein ACRYD_1845 PF01256 Carbohydrate kinase ACRYD_1845 PF03853 YjeF-related protein N-terminus ACRYD_1847 PF00814 Glycoprotease family ACRYD_1850 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ACRYD_1850 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACRYD_1850 PF13288 DXP reductoisomerase C-terminal domain ACRYD_1856 PF03129 Anticodon binding domain ACRYD_1856 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACRYD_1856 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACRYD_1857 PF05198 Translation initiation factor IF-3, N-terminal domain ACRYD_1857 PF00707 Translation initiation factor IF-3, C-terminal domain ACRYD_1858 PF01632 Ribosomal protein L35 ACRYD_1859 PF00453 Ribosomal protein L20 ACRYD_1861 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYD_1862 PF12804 MobA-like NTP transferase domain ACRYD_1863 PF00330 Aconitase family (aconitate hydratase) ACRYD_1864 PF03960 ArsC family ACRYD_1866 PF04303 PrpF protein ACRYD_1867 PF00694 Aconitase C-terminal domain ACRYD_1867 PF00330 Aconitase family (aconitate hydratase) ACRYD_1868 PF00285 Citrate synthase, C-terminal domain ACRYD_1871 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACRYD_1871 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACRYD_1872 PF01474 Class-II DAHP synthetase family ACRYD_1873 PF00923 Transaldolase/Fructose-6-phosphate aldolase ACRYD_1876 PF03652 Holliday junction resolvase ACRYD_1877 PF03616 Sodium/glutamate symporter ACRYD_1881 PF01648 4'-phosphopantetheinyl transferase superfamily ACRYD_1882 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_1883 PF02569 Pantoate-beta-alanine ligase ACRYD_1885 PF00919 Uncharacterized protein family UPF0004 ACRYD_1885 PF04055 Radical SAM superfamily ACRYD_1885 PF18693 TRAM domain ACRYD_1886 PF01171 PP-loop family ACRYD_1889 PF17969 L,D-transpeptidase C-terminal domain ACRYD_1889 PF03734 L,D-transpeptidase catalytic domain ACRYD_1891 PF03831 PhnA domain ACRYD_1891 PF08274 PhnA Zinc-Ribbon ACRYD_1892 PF12849 PBP superfamily domain ACRYD_1893 PF00563 EAL domain ACRYD_1893 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_1893 PF03707 Bacterial signalling protein N terminal repeat ACRYD_1894 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_1895 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_1896 PF00005 ABC transporter ACRYD_1897 PF01895 PhoU domain ACRYD_1899 PF00072 Response regulator receiver domain ACRYD_1899 PF00486 Transcriptional regulatory protein, C terminal ACRYD_1900 PF16736 Single Cache-like ACRYD_1900 PF00989 PAS fold ACRYD_1900 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_1900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1901 PF00572 Ribosomal protein L13 ACRYD_1902 PF00380 Ribosomal protein S9/S16 ACRYD_1903 PF03070 TENA/THI-4/PQQC family ACRYD_1904 PF02110 Hydroxyethylthiazole kinase family ACRYD_1905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACRYD_1906 PF13419 Haloacid dehalogenase-like hydrolase ACRYD_1910 PF09383 NIL domain ACRYD_1910 PF00005 ABC transporter ACRYD_1911 PF02405 Permease MlaE ACRYD_1912 PF02664 S-Ribosylhomocysteinase (LuxS) ACRYD_1913 PF01266 FAD dependent oxidoreductase ACRYD_1913 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ACRYD_1914 PF07943 Penicillin-binding protein 5, C-terminal domain ACRYD_1914 PF00768 D-alanyl-D-alanine carboxypeptidase ACRYD_1916 PF13426 PAS domain ACRYD_1916 PF13188 PAS domain ACRYD_1916 PF00989 PAS fold ACRYD_1916 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_1916 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1917 PF02310 B12 binding domain ACRYD_1917 PF02607 B12 binding domain ACRYD_1917 PF02965 Vitamin B12 dependent methionine synthase, activation domain ACRYD_1917 PF00809 Pterin binding enzyme ACRYD_1917 PF02574 Homocysteine S-methyltransferase ACRYD_1919 PF01063 Amino-transferase class IV ACRYD_1922 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ACRYD_1922 PF01502 Phosphoribosyl-AMP cyclohydrolase ACRYD_1924 PF10609 NUBPL iron-transfer P-loop NTPase ACRYD_1924 PF01883 Iron-sulfur cluster assembly protein ACRYD_1925 PF01964 Radical SAM ThiC family ACRYD_1927 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ACRYD_1927 PF02542 YgbB family ACRYD_1929 PF04608 Phosphatidylglycerophosphatase A ACRYD_1930 PF00472 RF-1 domain ACRYD_1930 PF03462 PCRF domain ACRYD_1931 PF01649 Ribosomal protein S20 ACRYD_1932 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACRYD_1932 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACRYD_1932 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACRYD_1932 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACRYD_1933 PF01252 Signal peptidase (SPase) II ACRYD_1934 PF00202 Aminotransferase class-III ACRYD_1936 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACRYD_1936 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACRYD_1938 PF01063 Amino-transferase class IV ACRYD_1939 PF00117 Glutamine amidotransferase class-I ACRYD_1939 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ACRYD_1941 PF00709 Adenylosuccinate synthetase ACRYD_1942 PF13393 Histidyl-tRNA synthetase ACRYD_1943 PF00266 Aminotransferase class-V ACRYD_1948 PF02678 Pirin ACRYD_1948 PF17954 Quercetinase C-terminal cupin domain ACRYD_1951 PF09962 Uncharacterized conserved protein (DUF2196) ACRYD_1952 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACRYD_1952 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACRYD_1953 PF00586 AIR synthase related protein, N-terminal domain ACRYD_1953 PF02769 AIR synthase related protein, C-terminal domain ACRYD_1954 PF17284 Spermidine synthase tetramerisation domain ACRYD_1955 PF01121 Dephospho-CoA kinase ACRYD_1957 PF13746 4Fe-4S dicluster domain ACRYD_1957 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ACRYD_1957 PF12801 4Fe-4S binding domain ACRYD_1958 PF06418 CTP synthase N-terminus ACRYD_1958 PF00117 Glutamine amidotransferase class-I ACRYD_1959 PF01368 DHH family ACRYD_1959 PF02272 DHHA1 domain ACRYD_1959 PF17768 RecJ OB domain ACRYD_1959 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ACRYD_1962 PF01965 DJ-1/PfpI family ACRYD_1963 PF02811 PHP domain ACRYD_1963 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYD_1963 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYD_1963 PF14579 Helix-hairpin-helix motif ACRYD_1964 PF01975 Survival protein SurE ACRYD_1967 PF01967 MoaC family ACRYD_1968 PF01165 Ribosomal protein S21 ACRYD_1969 PF02535 ZIP Zinc transporter ACRYD_1977 PF07669 Eco57I restriction-modification methylase ACRYD_1979 PF01040 UbiA prenyltransferase family ACRYD_1982 PF01197 Ribosomal protein L31 ACRYD_1983 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACRYD_1984 PF00588 SpoU rRNA Methylase family ACRYD_1984 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACRYD_1986 PF00155 Aminotransferase class I and II ACRYD_1987 PF01842 ACT domain ACRYD_1987 PF00742 Homoserine dehydrogenase ACRYD_1987 PF03447 Homoserine dehydrogenase, NAD binding domain ACRYD_1988 PF00849 RNA pseudouridylate synthase ACRYD_1989 PF00206 Lyase ACRYD_1989 PF10397 Adenylosuccinate lyase C-terminus ACRYD_1990 PF02867 Ribonucleotide reductase, barrel domain ACRYD_1990 PF00317 Ribonucleotide reductase, all-alpha domain ACRYD_1990 PF03477 ATP cone domain ACRYD_1991 PF00268 Ribonucleotide reductase, small chain ACRYD_1994 PF07715 TonB-dependent Receptor Plug Domain ACRYD_1994 PF00593 TonB dependent receptor ACRYD_1996 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_1996 PF08447 PAS fold ACRYD_1996 PF08448 PAS fold ACRYD_1997 PF00072 Response regulator receiver domain ACRYD_1997 PF00486 Transcriptional regulatory protein, C terminal ACRYD_2001 PF08240 Alcohol dehydrogenase GroES-like domain ACRYD_2001 PF00107 Zinc-binding dehydrogenase ACRYD_2002 PF01638 HxlR-like helix-turn-helix ACRYD_2003 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACRYD_2003 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACRYD_2004 PF02934 GatB/GatE catalytic domain ACRYD_2004 PF02637 GatB domain ACRYD_2006 PF01872 RibD C-terminal domain ACRYD_2006 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACRYD_2007 PF00364 Biotin-requiring enzyme ACRYD_2008 PF02785 Biotin carboxylase C-terminal domain ACRYD_2008 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACRYD_2008 PF00289 Biotin carboxylase, N-terminal domain ACRYD_2009 PF00270 DEAD/DEAH box helicase ACRYD_2009 PF00271 Helicase conserved C-terminal domain ACRYD_2010 PF00313 'Cold-shock' DNA-binding domain ACRYD_2013 PF01384 Phosphate transporter family ACRYD_2015 PF13537 Glutamine amidotransferase domain ACRYD_2015 PF00733 Asparagine synthase ACRYD_2018 PF02562 PhoH-like protein ACRYD_2018 PF13638 PIN domain ACRYD_2019 PF03653 Uncharacterised protein family (UPF0093) ACRYD_2020 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACRYD_2020 PF12002 MgsA AAA+ ATPase C terminal ACRYD_2020 PF01661 Macro domain ACRYD_2020 PF16193 AAA C-terminal domain ACRYD_2021 PF01479 S4 domain ACRYD_2021 PF00849 RNA pseudouridylate synthase ACRYD_2022 PF01380 SIS domain ACRYD_2022 PF00571 CBS domain ACRYD_2023 PF00753 Metallo-beta-lactamase superfamily ACRYD_2023 PF17770 Ribonuclease J C-terminal domain ACRYD_2023 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ACRYD_2024 PF00398 Ribosomal RNA adenine dimethylase ACRYD_2025 PF00977 Histidine biosynthesis protein ACRYD_2028 PF04055 Radical SAM superfamily ACRYD_2029 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACRYD_2030 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ACRYD_2031 PF00072 Response regulator receiver domain ACRYD_2031 PF00486 Transcriptional regulatory protein, C terminal ACRYD_2032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_2036 PF00873 AcrB/AcrD/AcrF family ACRYD_2037 PF04264 YceI-like domain ACRYD_2038 PF00291 Pyridoxal-phosphate dependent enzyme ACRYD_2041 PF00149 Calcineurin-like phosphoesterase ACRYD_2042 PF00011 Hsp20/alpha crystallin family ACRYD_2044 PF17850 CysA C-terminal regulatory domain ACRYD_2044 PF12857 TOBE-like domain ACRYD_2044 PF00005 ABC transporter ACRYD_2045 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_2046 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_2047 PF02203 Tar ligand binding domain homologue ACRYD_2047 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_2047 PF00672 HAMP domain ACRYD_2048 PF00563 EAL domain ACRYD_2048 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_2048 PF10442 FIST C domain ACRYD_2048 PF08495 FIST N domain ACRYD_2049 PF00581 Rhodanese-like domain ACRYD_2049 PF00899 ThiF family ACRYD_2052 PF02082 Transcriptional regulator ACRYD_2053 PF00679 Elongation factor G C-terminus ACRYD_2053 PF03144 Elongation factor Tu domain 2 ACRYD_2053 PF00009 Elongation factor Tu GTP binding domain ACRYD_2054 PF04143 Sulphur transport ACRYD_2055 PF01206 Sulfurtransferase TusA ACRYD_2056 PF00884 Sulfatase ACRYD_2056 PF08019 Phosphoethanolamine transferase EptA/EptB ACRYD_2058 PF01219 Prokaryotic diacylglycerol kinase ACRYD_2064 PF00072 Response regulator receiver domain ACRYD_2064 PF00486 Transcriptional regulatory protein, C terminal ACRYD_2066 PF11849 Domain of unknown function (DUF3369) ACRYD_2067 PF02511 Thymidylate synthase complementing protein ACRYD_2068 PF03458 UPF0126 domain ACRYD_2070 PF02911 Formyl transferase, C-terminal domain ACRYD_2070 PF00551 Formyl transferase ACRYD_2071 PF02075 Crossover junction endodeoxyribonuclease RuvC