locus-tag class description ADFLV_0001 PF08299 Bacterial dnaA protein helix-turn-helix ADFLV_0001 PF00308 Bacterial dnaA protein ADFLV_0001 PF11638 DnaA N-terminal domain ADFLV_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ADFLV_0002 PF02767 DNA polymerase III beta subunit, central domain ADFLV_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ADFLV_0003 PF00204 DNA gyrase B ADFLV_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ADFLV_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0003 PF01751 Toprim domain ADFLV_0004 PF07992 Pyridine nucleotide-disulphide oxidoreductase ADFLV_0005 PF14489 QueF-like protein ADFLV_0017 PF13356 Arm DNA-binding domain ADFLV_0017 PF00589 Phage integrase family ADFLV_0019 PF09335 SNARE associated Golgi protein ADFLV_0020 PF12838 4Fe-4S dicluster domain ADFLV_0021 PF10431 C-terminal, D2-small domain, of ClpB protein ADFLV_0021 PF07724 AAA domain (Cdc48 subfamily) ADFLV_0021 PF06689 ClpX C4-type zinc finger ADFLV_0024 PF00158 Sigma-54 interaction domain ADFLV_0024 PF01590 GAF domain ADFLV_0024 PF02954 Bacterial regulatory protein, Fis family ADFLV_0026 PF02910 Fumarate reductase flavoprotein C-term ADFLV_0026 PF00890 FAD binding domain ADFLV_0027 PF00248 Aldo/keto reductase family ADFLV_0028 PF03459 TOBE domain ADFLV_0028 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ADFLV_0029 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ADFLV_0029 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ADFLV_0030 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_0033 PF13649 Methyltransferase domain ADFLV_0034 PF00005 ABC transporter ADFLV_0037 PF00296 Luciferase-like monooxygenase ADFLV_0038 PF00005 ABC transporter ADFLV_0038 PF08402 TOBE domain ADFLV_0039 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_0042 PF03459 TOBE domain ADFLV_0042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ADFLV_0043 PF00148 Nitrogenase component 1 type Oxidoreductase ADFLV_0043 PF11844 Domain of unknown function (DUF3364) ADFLV_0044 PF00148 Nitrogenase component 1 type Oxidoreductase ADFLV_0046 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ADFLV_0047 PF03976 Polyphosphate kinase 2 (PPK2) ADFLV_0049 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0049 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0050 PF04552 Sigma-54, DNA binding domain ADFLV_0050 PF00309 Sigma-54 factor, Activator interacting domain (AID) ADFLV_0050 PF04963 Sigma-54 factor, core binding domain ADFLV_0051 PF00111 2Fe-2S iron-sulfur cluster binding domain ADFLV_0054 PF03206 Nitrogen fixation protein NifW ADFLV_0055 PF00258 Flavodoxin ADFLV_0056 PF03270 Protein of unknown function, DUF269 ADFLV_0057 PF02579 Dinitrogenase iron-molybdenum cofactor ADFLV_0062 PF00148 Nitrogenase component 1 type Oxidoreductase ADFLV_0066 PF00148 Nitrogenase component 1 type Oxidoreductase ADFLV_0067 PF02525 Flavodoxin-like fold ADFLV_0068 PF01638 HxlR-like helix-turn-helix ADFLV_0071 PF02579 Dinitrogenase iron-molybdenum cofactor ADFLV_0072 PF00258 Flavodoxin ADFLV_0072 PF00753 Metallo-beta-lactamase superfamily ADFLV_0073 PF03466 LysR substrate binding domain ADFLV_0073 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ADFLV_0075 PF01810 LysE type translocator ADFLV_0077 PF04055 Radical SAM superfamily ADFLV_0077 PF02579 Dinitrogenase iron-molybdenum cofactor ADFLV_0079 PF00682 HMGL-like ADFLV_0085 PF02203 Tar ligand binding domain homologue ADFLV_0085 PF00672 HAMP domain ADFLV_0085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0086 PF08447 PAS fold ADFLV_0086 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0087 PF00849 RNA pseudouridylate synthase ADFLV_0088 PF10397 Adenylosuccinate lyase C-terminus ADFLV_0088 PF00206 Lyase ADFLV_0089 PF03477 ATP cone domain ADFLV_0089 PF02867 Ribonucleotide reductase, barrel domain ADFLV_0089 PF00317 Ribonucleotide reductase, all-alpha domain ADFLV_0090 PF00268 Ribonucleotide reductase, small chain ADFLV_0093 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ADFLV_0096 PF01928 CYTH domain ADFLV_0097 PF03063 Prismane/CO dehydrogenase family ADFLV_0100 PF00691 OmpA family ADFLV_0101 PF00318 Ribosomal protein S2 ADFLV_0102 PF08240 Alcohol dehydrogenase GroES-like domain ADFLV_0102 PF00107 Zinc-binding dehydrogenase ADFLV_0103 PF01638 HxlR-like helix-turn-helix ADFLV_0104 PF03649 Uncharacterised protein family (UPF0014) ADFLV_0106 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ADFLV_0106 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ADFLV_0107 PF02637 GatB domain ADFLV_0107 PF02934 GatB/GatE catalytic domain ADFLV_0110 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ADFLV_0112 PF03480 Bacterial extracellular solute-binding protein, family 7 ADFLV_0115 PF00486 Transcriptional regulatory protein, C terminal ADFLV_0115 PF00072 Response regulator receiver domain ADFLV_0116 PF00989 PAS fold ADFLV_0116 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0116 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0117 PF02589 LUD domain ADFLV_0118 PF02589 LUD domain ADFLV_0118 PF11870 Domain of unknown function (DUF3390) ADFLV_0118 PF13183 4Fe-4S dicluster domain ADFLV_0119 PF02754 Cysteine-rich domain ADFLV_0121 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ADFLV_0122 PF00364 Biotin-requiring enzyme ADFLV_0123 PF00289 Biotin carboxylase, N-terminal domain ADFLV_0123 PF02785 Biotin carboxylase C-terminal domain ADFLV_0123 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ADFLV_0124 PF00270 DEAD/DEAH box helicase ADFLV_0124 PF00271 Helicase conserved C-terminal domain ADFLV_0125 PF01384 Phosphate transporter family ADFLV_0127 PF13537 Glutamine amidotransferase domain ADFLV_0127 PF00733 Asparagine synthase ADFLV_0129 PF00881 Nitroreductase family ADFLV_0130 PF03480 Bacterial extracellular solute-binding protein, family 7 ADFLV_0131 PF13085 2Fe-2S iron-sulfur cluster binding domain ADFLV_0131 PF13183 4Fe-4S dicluster domain ADFLV_0132 PF02910 Fumarate reductase flavoprotein C-term ADFLV_0132 PF00890 FAD binding domain ADFLV_0134 PF02562 PhoH-like protein ADFLV_0134 PF13638 PIN domain ADFLV_0136 PF01661 Macro domain ADFLV_0136 PF05496 Holliday junction DNA helicase RuvB P-loop domain ADFLV_0136 PF12002 MgsA AAA+ ATPase C terminal ADFLV_0136 PF16193 AAA C-terminal domain ADFLV_0137 PF00849 RNA pseudouridylate synthase ADFLV_0137 PF01479 S4 domain ADFLV_0138 PF00571 CBS domain ADFLV_0138 PF01380 SIS domain ADFLV_0139 PF00753 Metallo-beta-lactamase superfamily ADFLV_0139 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ADFLV_0139 PF17770 Ribonuclease J C-terminal domain ADFLV_0140 PF00398 Ribosomal RNA adenine dimethylase ADFLV_0141 PF00977 Histidine biosynthesis protein ADFLV_0144 PF04055 Radical SAM superfamily ADFLV_0145 PF00749 tRNA synthetases class I (E and Q), catalytic domain ADFLV_0146 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ADFLV_0147 PF00486 Transcriptional regulatory protein, C terminal ADFLV_0147 PF00072 Response regulator receiver domain ADFLV_0148 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0152 PF00873 AcrB/AcrD/AcrF family ADFLV_0153 PF04264 YceI-like domain ADFLV_0155 PF01554 MatE ADFLV_0156 PF13411 MerR HTH family regulatory protein ADFLV_0157 PF00857 Isochorismatase family ADFLV_0158 PF03447 Homoserine dehydrogenase, NAD binding domain ADFLV_0158 PF00742 Homoserine dehydrogenase ADFLV_0158 PF01842 ACT domain ADFLV_0159 PF00155 Aminotransferase class I and II ADFLV_0161 PF08032 RNA 2'-O ribose methyltransferase substrate binding ADFLV_0161 PF00588 SpoU rRNA Methylase family ADFLV_0162 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ADFLV_0163 PF01197 Ribosomal protein L31 ADFLV_0176 PF00437 Type II/IV secretion system protein ADFLV_0182 PF02222 ATP-grasp domain ADFLV_0184 PF01678 Diaminopimelate epimerase ADFLV_0185 PF01121 Dephospho-CoA kinase ADFLV_0186 PF17284 Spermidine synthase tetramerisation domain ADFLV_0187 PF02769 AIR synthase related protein, C-terminal domain ADFLV_0187 PF00586 AIR synthase related protein, N-terminal domain ADFLV_0188 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ADFLV_0188 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ADFLV_0189 PF17954 Quercetinase C-terminal cupin domain ADFLV_0189 PF02678 Pirin ADFLV_0192 PF04264 YceI-like domain ADFLV_0193 PF01047 MarR family ADFLV_0194 PF00266 Aminotransferase class-V ADFLV_0195 PF13393 Histidyl-tRNA synthetase ADFLV_0196 PF00709 Adenylosuccinate synthetase ADFLV_0198 PF00117 Glutamine amidotransferase class-I ADFLV_0198 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ADFLV_0199 PF04608 Phosphatidylglycerophosphatase A ADFLV_0201 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ADFLV_0201 PF02542 YgbB family ADFLV_0204 PF01964 Radical SAM ThiC family ADFLV_0205 PF10609 NUBPL iron-transfer P-loop NTPase ADFLV_0205 PF01883 Iron-sulfur cluster assembly protein ADFLV_0207 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ADFLV_0207 PF01502 Phosphoribosyl-AMP cyclohydrolase ADFLV_0210 PF01063 Amino-transferase class IV ADFLV_0212 PF00925 GTP cyclohydrolase II ADFLV_0214 PF00809 Pterin binding enzyme ADFLV_0214 PF02310 B12 binding domain ADFLV_0214 PF02965 Vitamin B12 dependent methionine synthase, activation domain ADFLV_0214 PF02574 Homocysteine S-methyltransferase ADFLV_0214 PF02607 B12 binding domain ADFLV_0215 PF00892 EamA-like transporter family ADFLV_0217 PF00465 Iron-containing alcohol dehydrogenase ADFLV_0218 PF09997 Predicted membrane protein (DUF2238) ADFLV_0219 PF08448 PAS fold ADFLV_0219 PF08447 PAS fold ADFLV_0219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0221 PF00768 D-alanyl-D-alanine carboxypeptidase ADFLV_0221 PF07943 Penicillin-binding protein 5, C-terminal domain ADFLV_0224 PF02664 S-Ribosylhomocysteinase (LuxS) ADFLV_0232 PF02405 Permease MlaE ADFLV_0233 PF09383 NIL domain ADFLV_0233 PF00005 ABC transporter ADFLV_0237 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ADFLV_0238 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ADFLV_0238 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ADFLV_0240 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ADFLV_0241 PF13419 Haloacid dehalogenase-like hydrolase ADFLV_0242 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ADFLV_0243 PF00380 Ribosomal protein S9/S16 ADFLV_0244 PF00572 Ribosomal protein L13 ADFLV_0245 PF00989 PAS fold ADFLV_0245 PF16736 Single Cache-like ADFLV_0245 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0246 PF00486 Transcriptional regulatory protein, C terminal ADFLV_0246 PF00072 Response regulator receiver domain ADFLV_0248 PF01895 PhoU domain ADFLV_0249 PF00005 ABC transporter ADFLV_0250 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_0251 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_0252 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0252 PF00989 PAS fold ADFLV_0252 PF01590 GAF domain ADFLV_0252 PF00563 EAL domain ADFLV_0253 PF12849 PBP superfamily domain ADFLV_0255 PF03462 PCRF domain ADFLV_0255 PF00472 RF-1 domain ADFLV_0256 PF01649 Ribosomal protein S20 ADFLV_0257 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ADFLV_0257 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ADFLV_0257 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ADFLV_0257 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ADFLV_0258 PF01252 Signal peptidase (SPase) II ADFLV_0259 PF00330 Aconitase family (aconitate hydratase) ADFLV_0260 PF12804 MobA-like NTP transferase domain ADFLV_0262 PF00453 Ribosomal protein L20 ADFLV_0263 PF01632 Ribosomal protein L35 ADFLV_0264 PF00707 Translation initiation factor IF-3, C-terminal domain ADFLV_0264 PF05198 Translation initiation factor IF-3, N-terminal domain ADFLV_0265 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ADFLV_0265 PF03129 Anticodon binding domain ADFLV_0265 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ADFLV_0272 PF13288 DXP reductoisomerase C-terminal domain ADFLV_0272 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ADFLV_0272 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ADFLV_0276 PF00814 Glycoprotease family ADFLV_0277 PF01253 Translation initiation factor SUI1 ADFLV_0278 PF03853 YjeF-related protein N-terminus ADFLV_0278 PF01256 Carbohydrate kinase ADFLV_0279 PF03091 CutA1 divalent ion tolerance protein ADFLV_0280 PF05690 Thiazole biosynthesis protein ThiG ADFLV_0285 PF00589 Phage integrase family ADFLV_0285 PF14659 Phage integrase, N-terminal SAM-like domain ADFLV_0302 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit ADFLV_0306 PF01699 Sodium/calcium exchanger protein ADFLV_0309 PF08463 EcoEI R protein C-terminal ADFLV_0309 PF00271 Helicase conserved C-terminal domain ADFLV_0309 PF04851 Type III restriction enzyme, res subunit ADFLV_0309 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) ADFLV_0311 PF08447 PAS fold ADFLV_0311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0311 PF08448 PAS fold ADFLV_0312 PF00486 Transcriptional regulatory protein, C terminal ADFLV_0312 PF00072 Response regulator receiver domain ADFLV_0314 PF03412 Peptidase C39 family ADFLV_0314 PF00005 ABC transporter ADFLV_0314 PF00664 ABC transporter transmembrane region ADFLV_0315 PF13533 Biotin-lipoyl like ADFLV_0317 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0317 PF00989 PAS fold ADFLV_0317 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0318 PF00456 Transketolase, thiamine diphosphate binding domain ADFLV_0318 PF02780 Transketolase, C-terminal domain ADFLV_0318 PF02779 Transketolase, pyrimidine binding domain ADFLV_0320 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ADFLV_0320 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ADFLV_0323 PF04172 LrgB-like family ADFLV_0324 PF01022 Bacterial regulatory protein, arsR family ADFLV_0326 PF02040 Arsenical pump membrane protein ADFLV_0327 PF01451 Low molecular weight phosphotyrosine protein phosphatase ADFLV_0330 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ADFLV_0331 PF01740 STAS domain ADFLV_0331 PF00916 Sulfate permease family ADFLV_0337 PF01553 Acyltransferase ADFLV_0337 PF00501 AMP-binding enzyme ADFLV_0339 PF08335 GlnD PII-uridylyltransferase ADFLV_0339 PF01966 HD domain ADFLV_0341 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0341 PF02743 Cache domain ADFLV_0341 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0344 PF12796 Ankyrin repeats (3 copies) ADFLV_0345 PF00909 Ammonium Transporter Family ADFLV_0346 PF00543 Nitrogen regulatory protein P-II ADFLV_0347 PF00909 Ammonium Transporter Family ADFLV_0348 PF00543 Nitrogen regulatory protein P-II ADFLV_0350 PF02154 Flagellar motor switch protein FliM ADFLV_0350 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ADFLV_0351 PF02119 Flagellar P-ring protein ADFLV_0353 PF01313 Bacterial export proteins, family 3 ADFLV_0358 PF02107 Flagellar L-ring protein ADFLV_0360 PF02465 Flagellar hook-associated protein 2 N-terminus ADFLV_0360 PF07195 Flagellar hook-associated protein 2 C-terminus ADFLV_0360 PF07196 Flagellin hook IN motif ADFLV_0361 PF02561 Flagellar protein FliS ADFLV_0363 PF01171 PP-loop family ADFLV_0364 PF18693 TRAM domain ADFLV_0364 PF00919 Uncharacterized protein family UPF0004 ADFLV_0364 PF04055 Radical SAM superfamily ADFLV_0365 PF02569 Pantoate-beta-alanine ligase ADFLV_0366 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_0368 PF01648 4'-phosphopantetheinyl transferase superfamily ADFLV_0369 PF03652 Holliday junction resolvase ADFLV_0372 PF00923 Transaldolase/Fructose-6-phosphate aldolase ADFLV_0373 PF01474 Class-II DAHP synthetase family ADFLV_0374 PF03502 Nucleoside-specific channel-forming protein, Tsx ADFLV_0376 PF03960 ArsC family ADFLV_0377 PF02686 Glu-tRNAGln amidotransferase C subunit ADFLV_0378 PF01702 Queuine tRNA-ribosyltransferase ADFLV_0380 PF00155 Aminotransferase class I and II ADFLV_0382 PF01225 Mur ligase family, catalytic domain ADFLV_0382 PF02875 Mur ligase family, glutamate ligase domain ADFLV_0382 PF08245 Mur ligase middle domain ADFLV_0383 PF06965 Na+/H+ antiporter 1 ADFLV_0385 PF04748 Divergent polysaccharide deacetylase ADFLV_0386 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ADFLV_0386 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ADFLV_0387 PF00773 RNB domain ADFLV_0390 PF01250 Ribosomal protein S6 ADFLV_0391 PF00436 Single-strand binding protein family ADFLV_0392 PF01084 Ribosomal protein S18 ADFLV_0393 PF01406 tRNA synthetases class I (C) catalytic domain ADFLV_0393 PF09190 DALR domain ADFLV_0394 PF13184 NusA-like KH domain ADFLV_0394 PF08529 NusA N-terminal domain ADFLV_0396 PF04055 Radical SAM superfamily ADFLV_0396 PF00919 Uncharacterized protein family UPF0004 ADFLV_0396 PF01938 TRAM domain ADFLV_0397 PF04028 Domain of unknown function (DUF374) ADFLV_0399 PF04055 Radical SAM superfamily ADFLV_0401 PF00484 Carbonic anhydrase ADFLV_0402 PF00155 Aminotransferase class I and II ADFLV_0403 PF02021 Uncharacterised protein family UPF0102 ADFLV_0406 PF00691 OmpA family ADFLV_0406 PF05736 OprF membrane domain ADFLV_0407 PF02887 Pyruvate kinase, alpha/beta domain ADFLV_0407 PF00224 Pyruvate kinase, barrel domain ADFLV_0407 PF00391 PEP-utilising enzyme, mobile domain ADFLV_0409 PF00202 Aminotransferase class-III ADFLV_0411 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ADFLV_0411 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ADFLV_0412 PF00425 chorismate binding enzyme ADFLV_0416 PF03591 AzlC protein ADFLV_0417 PF05437 Branched-chain amino acid transport protein (AzlD) ADFLV_0418 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ADFLV_0418 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ADFLV_0419 PF02504 Fatty acid synthesis protein ADFLV_0420 PF01783 Ribosomal L32p protein family ADFLV_0422 PF00334 Nucleoside diphosphate kinase ADFLV_0423 PF00037 4Fe-4S binding domain ADFLV_0424 PF00578 AhpC/TSA family ADFLV_0424 PF10417 C-terminal domain of 1-Cys peroxiredoxin ADFLV_0425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ADFLV_0425 PF07498 Rho termination factor, N-terminal domain ADFLV_0425 PF07497 Rho termination factor, RNA-binding domain ADFLV_0427 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ADFLV_0427 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ADFLV_0428 PF01177 Asp/Glu/Hydantoin racemase ADFLV_0429 PF12170 DNA polymerase III tau subunit V interacting with alpha ADFLV_0429 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ADFLV_0429 PF12169 DNA polymerase III subunits gamma and tau domain III ADFLV_0431 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ADFLV_0431 PF03900 Porphobilinogen deaminase, C-terminal domain ADFLV_0433 PF00072 Response regulator receiver domain ADFLV_0433 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0434 PF04303 PrpF protein ADFLV_0435 PF00694 Aconitase C-terminal domain ADFLV_0435 PF00330 Aconitase family (aconitate hydratase) ADFLV_0436 PF00285 Citrate synthase, C-terminal domain ADFLV_0439 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ADFLV_0439 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADFLV_0446 PF12833 Helix-turn-helix domain ADFLV_0446 PF06445 GyrI-like small molecule binding domain ADFLV_0447 PF00271 Helicase conserved C-terminal domain ADFLV_0447 PF00270 DEAD/DEAH box helicase ADFLV_0447 PF09382 RQC domain ADFLV_0447 PF00570 HRDC domain ADFLV_0447 PF16124 RecQ zinc-binding ADFLV_0449 PF01022 Bacterial regulatory protein, arsR family ADFLV_0450 PF00403 Heavy-metal-associated domain ADFLV_0453 PF01863 Protein of unknown function DUF45 ADFLV_0454 PF00350 Dynamin family ADFLV_0455 PF00350 Dynamin family ADFLV_0456 PF13183 4Fe-4S dicluster domain ADFLV_0456 PF13085 2Fe-2S iron-sulfur cluster binding domain ADFLV_0457 PF02910 Fumarate reductase flavoprotein C-term ADFLV_0457 PF00890 FAD binding domain ADFLV_0458 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ADFLV_0459 PF00361 Proton-conducting membrane transporter ADFLV_0460 PF00361 Proton-conducting membrane transporter ADFLV_0460 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ADFLV_0461 PF00361 Proton-conducting membrane transporter ADFLV_0461 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ADFLV_0462 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ADFLV_0463 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ADFLV_0464 PF12838 4Fe-4S dicluster domain ADFLV_0465 PF00146 NADH dehydrogenase ADFLV_0466 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ADFLV_0466 PF00384 Molybdopterin oxidoreductase ADFLV_0466 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ADFLV_0467 PF00285 Citrate synthase, C-terminal domain ADFLV_0468 PF10531 SLBB domain ADFLV_0468 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ADFLV_0468 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ADFLV_0470 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ADFLV_0470 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ADFLV_0471 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ADFLV_0472 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ADFLV_0473 PF00155 Aminotransferase class I and II ADFLV_0474 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ADFLV_0475 PF12821 Threonine/Serine exporter, ThrE ADFLV_0475 PF06738 Putative threonine/serine exporter ADFLV_0476 PF06738 Putative threonine/serine exporter ADFLV_0481 PF03309 Type III pantothenate kinase ADFLV_0482 PF01634 ATP phosphoribosyltransferase ADFLV_0484 PF08448 PAS fold ADFLV_0484 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0485 PF00579 tRNA synthetases class I (W and Y) ADFLV_0486 PF16916 Dimerisation domain of Zinc Transporter ADFLV_0486 PF01545 Cation efflux family ADFLV_0489 PF02403 Seryl-tRNA synthetase N-terminal domain ADFLV_0489 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ADFLV_0490 PF09423 PhoD-like phosphatase ADFLV_0490 PF16655 PhoD-like phosphatase, N-terminal domain ADFLV_0493 PF08447 PAS fold ADFLV_0493 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0497 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ADFLV_0498 PF12801 4Fe-4S binding domain ADFLV_0498 PF00037 4Fe-4S binding domain ADFLV_0499 PF12800 4Fe-4S binding domain ADFLV_0499 PF12838 4Fe-4S dicluster domain ADFLV_0500 PF01568 Molydopterin dinucleotide binding domain ADFLV_0500 PF10518 TAT (twin-arginine translocation) pathway signal sequence ADFLV_0500 PF00384 Molybdopterin oxidoreductase ADFLV_0500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ADFLV_0501 PF00563 EAL domain ADFLV_0501 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0501 PF10442 FIST C domain ADFLV_0501 PF08495 FIST N domain ADFLV_0502 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ADFLV_0505 PF00591 Glycosyl transferase family, a/b domain ADFLV_0505 PF02885 Glycosyl transferase family, helical bundle domain ADFLV_0506 PF04055 Radical SAM superfamily ADFLV_0506 PF06463 Molybdenum Cofactor Synthesis C ADFLV_0507 PF00312 Ribosomal protein S15 ADFLV_0510 PF13380 CoA binding domain ADFLV_0511 PF08521 Two-component sensor kinase N-terminal ADFLV_0511 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0511 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0512 PF00072 Response regulator receiver domain ADFLV_0512 PF00486 Transcriptional regulatory protein, C terminal ADFLV_0513 PF00639 PPIC-type PPIASE domain ADFLV_0514 PF01116 Fructose-bisphosphate aldolase class-II ADFLV_0515 PF00072 Response regulator receiver domain ADFLV_0515 PF00486 Transcriptional regulatory protein, C terminal ADFLV_0516 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0517 PF00171 Aldehyde dehydrogenase family ADFLV_0519 PF02472 Biopolymer transport protein ExbD/TolR ADFLV_0520 PF01618 MotA/TolQ/ExbB proton channel family ADFLV_0522 PF00989 PAS fold ADFLV_0522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0522 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0522 PF08447 PAS fold ADFLV_0523 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0523 PF00563 EAL domain ADFLV_0523 PF03707 Bacterial signalling protein N terminal repeat ADFLV_0524 PF01202 Shikimate kinase ADFLV_0525 PF00815 Histidinol dehydrogenase ADFLV_0527 PF00348 Polyprenyl synthetase ADFLV_0528 PF01488 Shikimate / quinate 5-dehydrogenase ADFLV_0528 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ADFLV_0528 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ADFLV_0529 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ADFLV_0529 PF04073 Aminoacyl-tRNA editing domain ADFLV_0529 PF03129 Anticodon binding domain ADFLV_0530 PF00924 Mechanosensitive ion channel ADFLV_0530 PF05552 Conserved TM helix ADFLV_0531 PF01966 HD domain ADFLV_0531 PF01743 Poly A polymerase head domain ADFLV_0531 PF12627 Probable RNA and SrmB- binding site of polymerase A ADFLV_0535 PF02699 Preprotein translocase subunit ADFLV_0536 PF02355 Protein export membrane protein ADFLV_0537 PF07549 SecD/SecF GG Motif ADFLV_0537 PF02355 Protein export membrane protein ADFLV_0540 PF09334 tRNA synthetases class I (M) ADFLV_0540 PF13603 Leucyl-tRNA synthetase, Domain 2 ADFLV_0540 PF00133 tRNA synthetases class I (I, L, M and V) ADFLV_0542 PF08245 Mur ligase middle domain ADFLV_0544 PF00999 Sodium/hydrogen exchanger family ADFLV_0544 PF02254 TrkA-N domain ADFLV_0549 PF03824 High-affinity nickel-transport protein ADFLV_0553 PF04286 Protein of unknown function (DUF445) ADFLV_0556 PF17757 UvrB interaction domain ADFLV_0556 PF03461 TRCF domain ADFLV_0556 PF00271 Helicase conserved C-terminal domain ADFLV_0556 PF00270 DEAD/DEAH box helicase ADFLV_0556 PF02559 CarD-like/TRCF domain ADFLV_0559 PF07495 Y_Y_Y domain ADFLV_0559 PF00072 Response regulator receiver domain ADFLV_0559 PF07494 Two component regulator propeller ADFLV_0559 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0559 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0559 PF12833 Helix-turn-helix domain ADFLV_0561 PF01590 GAF domain ADFLV_0561 PF00563 EAL domain ADFLV_0561 PF00360 Phytochrome region ADFLV_0561 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0563 PF00486 Transcriptional regulatory protein, C terminal ADFLV_0563 PF00072 Response regulator receiver domain ADFLV_0566 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0566 PF02743 Cache domain ADFLV_0566 PF00672 HAMP domain ADFLV_0567 PF02954 Bacterial regulatory protein, Fis family ADFLV_0567 PF00158 Sigma-54 interaction domain ADFLV_0567 PF00072 Response regulator receiver domain ADFLV_0568 PF08447 PAS fold ADFLV_0568 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0569 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0569 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0570 PF13277 YmdB-like protein ADFLV_0573 PF01209 ubiE/COQ5 methyltransferase family ADFLV_0574 PF02601 Exonuclease VII, large subunit ADFLV_0574 PF13742 OB-fold nucleic acid binding domain ADFLV_0575 PF01584 CheW-like domain ADFLV_0576 PF02954 Bacterial regulatory protein, Fis family ADFLV_0576 PF00158 Sigma-54 interaction domain ADFLV_0576 PF00072 Response regulator receiver domain ADFLV_0577 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ADFLV_0579 PF02261 Aspartate decarboxylase ADFLV_0580 PF02575 YbaB/EbfC DNA-binding family ADFLV_0581 PF00348 Polyprenyl synthetase ADFLV_0582 PF00166 Chaperonin 10 Kd subunit ADFLV_0583 PF00118 TCP-1/cpn60 chaperonin family ADFLV_0585 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0585 PF00672 HAMP domain ADFLV_0586 PF00072 Response regulator receiver domain ADFLV_0586 PF00486 Transcriptional regulatory protein, C terminal ADFLV_0587 PF00149 Calcineurin-like phosphoesterase ADFLV_0589 PF04264 YceI-like domain ADFLV_0592 PF00005 ABC transporter ADFLV_0594 PF00459 Inositol monophosphatase family ADFLV_0595 PF01380 SIS domain ADFLV_0598 PF00438 S-adenosylmethionine synthetase, N-terminal domain ADFLV_0598 PF02773 S-adenosylmethionine synthetase, C-terminal domain ADFLV_0598 PF02772 S-adenosylmethionine synthetase, central domain ADFLV_0599 PF01039 Carboxyl transferase domain ADFLV_0599 PF17848 Acetyl-coA carboxylase zinc finger domain ADFLV_0600 PF02581 Thiamine monophosphate synthase ADFLV_0601 PF02590 Predicted SPOUT methyltransferase ADFLV_0603 PF01207 Dihydrouridine synthase (Dus) ADFLV_0605 PF01434 Peptidase family M41 ADFLV_0605 PF17862 AAA+ lid domain ADFLV_0605 PF00004 ATPase family associated with various cellular activities (AAA) ADFLV_0606 PF11849 Domain of unknown function (DUF3369) ADFLV_0607 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0607 PF08448 PAS fold ADFLV_0607 PF08447 PAS fold ADFLV_0608 PF00682 HMGL-like ADFLV_0608 PF08502 LeuA allosteric (dimerisation) domain ADFLV_0609 PF07556 Protein of unknown function (DUF1538) ADFLV_0610 PF00085 Thioredoxin ADFLV_0612 PF01624 MutS domain I ADFLV_0612 PF00488 MutS domain V ADFLV_0612 PF05190 MutS family domain IV ADFLV_0612 PF05188 MutS domain II ADFLV_0612 PF05192 MutS domain III ADFLV_0616 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit ADFLV_0618 PF00664 ABC transporter transmembrane region ADFLV_0618 PF00005 ABC transporter ADFLV_0620 PF01266 FAD dependent oxidoreductase ADFLV_0621 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0622 PF00977 Histidine biosynthesis protein ADFLV_0623 PF01370 NAD dependent epimerase/dehydratase family ADFLV_0623 PF08338 Domain of unknown function (DUF1731) ADFLV_0624 PF00117 Glutamine amidotransferase class-I ADFLV_0626 PF00009 Elongation factor Tu GTP binding domain ADFLV_0626 PF06421 GTP-binding protein LepA C-terminus ADFLV_0626 PF03144 Elongation factor Tu domain 2 ADFLV_0626 PF00679 Elongation factor G C-terminus ADFLV_0627 PF05736 OprF membrane domain ADFLV_0627 PF00691 OmpA family ADFLV_0628 PF05736 OprF membrane domain ADFLV_0628 PF00691 OmpA family ADFLV_0629 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ADFLV_0629 PF14572 Phosphoribosyl synthetase-associated domain ADFLV_0632 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ADFLV_0633 PF00557 Metallopeptidase family M24 ADFLV_0633 PF01321 Creatinase/Prolidase N-terminal domain ADFLV_0634 PF01220 Dehydroquinase class II ADFLV_0635 PF01979 Amidohydrolase family ADFLV_0636 PF01343 Peptidase family S49 ADFLV_0637 PF00871 Acetokinase family ADFLV_0638 PF01515 Phosphate acetyl/butaryl transferase ADFLV_0639 PF00871 Acetokinase family ADFLV_0640 PF00871 Acetokinase family ADFLV_0641 PF00929 Exonuclease ADFLV_0641 PF02811 PHP domain ADFLV_0641 PF14579 Helix-hairpin-helix motif ADFLV_0641 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ADFLV_0641 PF14480 DNA polymerase III polC-type N-terminus I ADFLV_0641 PF11490 DNA polymerase III polC-type N-terminus II ADFLV_0641 PF07733 Bacterial DNA polymerase III alpha NTPase domain ADFLV_0643 PF00474 Sodium:solute symporter family ADFLV_0645 PF00474 Sodium:solute symporter family ADFLV_0647 PF00929 Exonuclease ADFLV_0649 PF00474 Sodium:solute symporter family ADFLV_0651 PF00072 Response regulator receiver domain ADFLV_0651 PF00486 Transcriptional regulatory protein, C terminal ADFLV_0652 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0652 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0661 PF00994 Probable molybdopterin binding domain ADFLV_0661 PF02464 Competence-damaged protein ADFLV_0661 PF18146 Damage-inducible protein CinA KH domain ADFLV_0662 PF06039 Malate:quinone oxidoreductase (Mqo) ADFLV_0663 PF08264 Anticodon-binding domain of tRNA ADFLV_0663 PF00133 tRNA synthetases class I (I, L, M and V) ADFLV_0666 PF08245 Mur ligase middle domain ADFLV_0666 PF02875 Mur ligase family, glutamate ligase domain ADFLV_0668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0668 PF08447 PAS fold ADFLV_0668 PF08448 PAS fold ADFLV_0671 PF01882 Protein of unknown function DUF58 ADFLV_0672 PF17863 AAA lid domain ADFLV_0672 PF07726 ATPase family associated with various cellular activities (AAA) ADFLV_0673 PF00318 Ribosomal protein S2 ADFLV_0674 PF00889 Elongation factor TS ADFLV_0675 PF00005 ABC transporter ADFLV_0677 PF00625 Guanylate kinase ADFLV_0678 PF08448 PAS fold ADFLV_0678 PF00563 EAL domain ADFLV_0678 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0679 PF00403 Heavy-metal-associated domain ADFLV_0682 PF00005 ABC transporter ADFLV_0682 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ADFLV_0683 PF00762 Ferrochelatase ADFLV_0686 PF01875 Memo-like protein ADFLV_0688 PF00005 ABC transporter ADFLV_0689 PF00950 ABC 3 transport family ADFLV_0692 PF17783 CvfB-like winged helix domain ADFLV_0692 PF13509 S1 domain ADFLV_0693 PF08534 Redoxin ADFLV_0694 PF13181 Tetratricopeptide repeat ADFLV_0694 PF08238 Sel1 repeat ADFLV_0696 PF00174 Oxidoreductase molybdopterin binding domain ADFLV_0697 PF01794 Ferric reductase like transmembrane component ADFLV_0698 PF00580 UvrD/REP helicase N-terminal domain ADFLV_0698 PF13361 UvrD-like helicase C-terminal domain ADFLV_0699 PF02080 TrkA-C domain ADFLV_0699 PF02254 TrkA-N domain ADFLV_0699 PF00999 Sodium/hydrogen exchanger family ADFLV_0700 PF00174 Oxidoreductase molybdopterin binding domain ADFLV_0712 PF09339 IclR helix-turn-helix domain ADFLV_0712 PF01614 Bacterial transcriptional regulator ADFLV_0713 PF01965 DJ-1/PfpI family ADFLV_0714 PF00753 Metallo-beta-lactamase superfamily ADFLV_0717 PF00133 tRNA synthetases class I (I, L, M and V) ADFLV_0717 PF08264 Anticodon-binding domain of tRNA ADFLV_0717 PF10458 Valyl tRNA synthetase tRNA binding arm ADFLV_0718 PF09962 Uncharacterized conserved protein (DUF2196) ADFLV_0719 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ADFLV_0721 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0723 PF07690 Major Facilitator Superfamily ADFLV_0724 PF01725 Ham1 family ADFLV_0726 PF00196 Bacterial regulatory proteins, luxR family ADFLV_0726 PF00072 Response regulator receiver domain ADFLV_0728 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ADFLV_0728 PF08479 POTRA domain, ShlB-type ADFLV_0732 PF03807 NADP oxidoreductase coenzyme F420-dependent ADFLV_0732 PF14748 Pyrroline-5-carboxylate reductase dimerisation ADFLV_0733 PF13525 Outer membrane lipoprotein ADFLV_0734 PF00004 ATPase family associated with various cellular activities (AAA) ADFLV_0734 PF05362 Lon protease (S16) C-terminal proteolytic domain ADFLV_0734 PF02190 ATP-dependent protease La (LON) substrate-binding domain ADFLV_0738 PF01451 Low molecular weight phosphotyrosine protein phosphatase ADFLV_0739 PF13426 PAS domain ADFLV_0739 PF08447 PAS fold ADFLV_0739 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0740 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ADFLV_0741 PF17932 Tetracyclin repressor-like, C-terminal domain ADFLV_0741 PF00440 Bacterial regulatory proteins, tetR family ADFLV_0742 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ADFLV_0742 PF00529 HlyD membrane-fusion protein of T1SS ADFLV_0745 PF00892 EamA-like transporter family ADFLV_0746 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0746 PF02203 Tar ligand binding domain homologue ADFLV_0746 PF00672 HAMP domain ADFLV_0749 PF02785 Biotin carboxylase C-terminal domain ADFLV_0749 PF00289 Biotin carboxylase, N-terminal domain ADFLV_0749 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ADFLV_0750 PF08212 Lipocalin-like domain ADFLV_0751 PF02567 Phenazine biosynthesis-like protein ADFLV_0755 PF01883 Iron-sulfur cluster assembly protein ADFLV_0756 PF02657 Fe-S metabolism associated domain ADFLV_0757 PF00266 Aminotransferase class-V ADFLV_0759 PF00005 ABC transporter ADFLV_0760 PF01458 Uncharacterized protein family (UPF0051) ADFLV_0761 PF00989 PAS fold ADFLV_0761 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0761 PF08447 PAS fold ADFLV_0761 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0762 PF13426 PAS domain ADFLV_0762 PF01740 STAS domain ADFLV_0763 PF00266 Aminotransferase class-V ADFLV_0764 PF04324 BFD-like [2Fe-2S] binding domain ADFLV_0764 PF01106 NifU-like domain ADFLV_0764 PF01592 NifU-like N terminal domain ADFLV_0765 PF01810 LysE type translocator ADFLV_0768 PF01769 Divalent cation transporter ADFLV_0768 PF00571 CBS domain ADFLV_0768 PF03448 MgtE intracellular N domain ADFLV_0769 PF01925 Sulfite exporter TauE/SafE ADFLV_0770 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0770 PF17151 Periplasmic sensor domain ADFLV_0774 PF00206 Lyase ADFLV_0774 PF14698 Argininosuccinate lyase C-terminal ADFLV_0775 PF00072 Response regulator receiver domain ADFLV_0775 PF01584 CheW-like domain ADFLV_0776 PF00899 ThiF family ADFLV_0777 PF01272 Transcription elongation factor, GreA/GreB, C-term ADFLV_0777 PF03449 Transcription elongation factor, N-terminal ADFLV_0780 PF00271 Helicase conserved C-terminal domain ADFLV_0780 PF04851 Type III restriction enzyme, res subunit ADFLV_0780 PF02151 UvrB/uvrC motif ADFLV_0780 PF12344 Ultra-violet resistance protein B ADFLV_0780 PF17757 UvrB interaction domain ADFLV_0781 PF00633 Helix-hairpin-helix motif ADFLV_0781 PF00730 HhH-GPD superfamily base excision DNA repair protein ADFLV_0781 PF10576 Iron-sulfur binding domain of endonuclease III ADFLV_0783 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ADFLV_0783 PF01266 FAD dependent oxidoreductase ADFLV_0788 PF02502 Ribose/Galactose Isomerase ADFLV_0789 PF10502 Signal peptidase, peptidase S26 ADFLV_0790 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ADFLV_0790 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ADFLV_0791 PF01386 Ribosomal L25p family ADFLV_0791 PF14693 Ribosomal protein TL5, C-terminal domain ADFLV_0792 PF01195 Peptidyl-tRNA hydrolase ADFLV_0795 PF01520 N-acetylmuramoyl-L-alanine amidase ADFLV_0797 PF01479 S4 domain ADFLV_0797 PF00579 tRNA synthetases class I (W and Y) ADFLV_0798 PF02824 TGS domain ADFLV_0798 PF04607 Region found in RelA / SpoT proteins ADFLV_0798 PF13291 ACT domain ADFLV_0799 PF01192 RNA polymerase Rpb6 ADFLV_0800 PF00696 Amino acid kinase family ADFLV_0802 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ADFLV_0803 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ADFLV_0804 PF04715 Anthranilate synthase component I, N terminal region ADFLV_0804 PF00425 chorismate binding enzyme ADFLV_0806 PF00464 Serine hydroxymethyltransferase ADFLV_0807 PF01336 OB-fold nucleic acid binding domain ADFLV_0807 PF00152 tRNA synthetases class II (D, K and N) ADFLV_0809 PF08448 PAS fold ADFLV_0809 PF08447 PAS fold ADFLV_0809 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0810 PF04551 GcpE protein ADFLV_0811 PF17151 Periplasmic sensor domain ADFLV_0811 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0812 PF00772 DnaB-like helicase N terminal domain ADFLV_0812 PF03796 DnaB-like helicase C terminal domain ADFLV_0815 PF16363 GDP-mannose 4,6 dehydratase ADFLV_0816 PF00483 Nucleotidyl transferase ADFLV_0817 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ADFLV_0818 PF04321 RmlD substrate binding domain ADFLV_0820 PF16363 GDP-mannose 4,6 dehydratase ADFLV_0823 PF13419 Haloacid dehalogenase-like hydrolase ADFLV_0826 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ADFLV_0832 PF00535 Glycosyl transferase family 2 ADFLV_0833 PF01370 NAD dependent epimerase/dehydratase family ADFLV_0835 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ADFLV_0837 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system ADFLV_0838 PF00953 Glycosyl transferase family 4 ADFLV_0839 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ADFLV_0840 PF02719 Polysaccharide biosynthesis protein ADFLV_0842 PF14743 DNA ligase OB-like domain ADFLV_0842 PF01068 ATP dependent DNA ligase domain ADFLV_0843 PF00156 Phosphoribosyl transferase domain ADFLV_0844 PF00291 Pyridoxal-phosphate dependent enzyme ADFLV_0846 PF00883 Cytosol aminopeptidase family, catalytic domain ADFLV_0846 PF02789 Cytosol aminopeptidase family, N-terminal domain ADFLV_0847 PF02472 Biopolymer transport protein ExbD/TolR ADFLV_0848 PF01618 MotA/TolQ/ExbB proton channel family ADFLV_0852 PF02687 FtsX-like permease family ADFLV_0852 PF12704 MacB-like periplasmic core domain ADFLV_0852 PF00005 ABC transporter ADFLV_0853 PF12704 MacB-like periplasmic core domain ADFLV_0853 PF02687 FtsX-like permease family ADFLV_0853 PF00005 ABC transporter ADFLV_0862 PF01475 Ferric uptake regulator family ADFLV_0864 PF00206 Lyase ADFLV_0864 PF10415 Fumarase C C-terminus ADFLV_0870 PF07670 Nucleoside recognition ADFLV_0870 PF02421 Ferrous iron transport protein B ADFLV_0870 PF17910 FeoB cytosolic helical domain ADFLV_0870 PF07664 Ferrous iron transport protein B C terminus ADFLV_0870 PF04023 FeoA domain ADFLV_0871 PF04023 FeoA domain ADFLV_0872 PF07715 TonB-dependent Receptor Plug Domain ADFLV_0872 PF00593 TonB dependent receptor ADFLV_0873 PF00756 Putative esterase ADFLV_0874 PF07568 Histidine kinase ADFLV_0874 PF13581 Histidine kinase-like ATPase domain ADFLV_0874 PF13426 PAS domain ADFLV_0875 PF00072 Response regulator receiver domain ADFLV_0876 PF00593 TonB dependent receptor ADFLV_0876 PF07715 TonB-dependent Receptor Plug Domain ADFLV_0879 PF00486 Transcriptional regulatory protein, C terminal ADFLV_0879 PF00072 Response regulator receiver domain ADFLV_0882 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ADFLV_0882 PF08479 POTRA domain, ShlB-type ADFLV_0883 PF01926 50S ribosome-binding GTPase ADFLV_0883 PF06071 Protein of unknown function (DUF933) ADFLV_0887 PF06865 Pyrimidine/purine nucleoside phosphorylase ADFLV_0891 PF00586 AIR synthase related protein, N-terminal domain ADFLV_0891 PF02769 AIR synthase related protein, C-terminal domain ADFLV_0892 PF01142 tRNA pseudouridine synthase D (TruD) ADFLV_0894 PF07715 TonB-dependent Receptor Plug Domain ADFLV_0894 PF00593 TonB dependent receptor ADFLV_0895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0895 PF00672 HAMP domain ADFLV_0895 PF02203 Tar ligand binding domain homologue ADFLV_0896 PF07499 RuvA, C-terminal domain ADFLV_0896 PF01330 RuvA N terminal domain ADFLV_0897 PF01820 D-ala D-ala ligase N-terminus ADFLV_0897 PF07478 D-ala D-ala ligase C-terminus ADFLV_0899 PF01225 Mur ligase family, catalytic domain ADFLV_0899 PF02875 Mur ligase family, glutamate ligase domain ADFLV_0899 PF08245 Mur ligase middle domain ADFLV_0900 PF01230 HIT domain ADFLV_0902 PF01266 FAD dependent oxidoreductase ADFLV_0903 PF00338 Ribosomal protein S10p/S20e ADFLV_0904 PF00297 Ribosomal protein L3 ADFLV_0905 PF00573 Ribosomal protein L4/L1 family ADFLV_0906 PF00276 Ribosomal protein L23 ADFLV_0907 PF03947 Ribosomal Proteins L2, C-terminal domain ADFLV_0907 PF00181 Ribosomal Proteins L2, RNA binding domain ADFLV_0908 PF00203 Ribosomal protein S19 ADFLV_0909 PF00237 Ribosomal protein L22p/L17e ADFLV_0910 PF07650 KH domain ADFLV_0910 PF00189 Ribosomal protein S3, C-terminal domain ADFLV_0911 PF00252 Ribosomal protein L16p/L10e ADFLV_0912 PF00831 Ribosomal L29 protein ADFLV_0913 PF00366 Ribosomal protein S17 ADFLV_0914 PF00238 Ribosomal protein L14p/L23e ADFLV_0915 PF00467 KOW motif ADFLV_0915 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ADFLV_0916 PF00281 Ribosomal protein L5 ADFLV_0916 PF00673 ribosomal L5P family C-terminus ADFLV_0917 PF00253 Ribosomal protein S14p/S29e ADFLV_0918 PF00410 Ribosomal protein S8 ADFLV_0919 PF00347 Ribosomal protein L6 ADFLV_0920 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ADFLV_0921 PF00333 Ribosomal protein S5, N-terminal domain ADFLV_0921 PF03719 Ribosomal protein S5, C-terminal domain ADFLV_0922 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ADFLV_0923 PF00344 SecY translocase ADFLV_0924 PF00557 Metallopeptidase family M24 ADFLV_0925 PF01176 Translation initiation factor 1A / IF-1 ADFLV_0927 PF03167 Uracil DNA glycosylase superfamily ADFLV_0929 PF02938 GAD domain ADFLV_0929 PF00152 tRNA synthetases class II (D, K and N) ADFLV_0929 PF01336 OB-fold nucleic acid binding domain ADFLV_0932 PF08497 Radical SAM N-terminal ADFLV_0932 PF04055 Radical SAM superfamily ADFLV_0933 PF05191 Adenylate kinase, active site lid ADFLV_0937 PF00842 Alanine racemase, C-terminal domain ADFLV_0937 PF01168 Alanine racemase, N-terminal domain ADFLV_0938 PF01541 GIY-YIG catalytic domain ADFLV_0938 PF02151 UvrB/uvrC motif ADFLV_0938 PF08459 UvrC Helix-hairpin-helix N-terminal ADFLV_0940 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0940 PF08448 PAS fold ADFLV_0942 PF04973 Nicotinamide mononucleotide transporter ADFLV_0943 PF00255 Glutathione peroxidase ADFLV_0944 PF00672 HAMP domain ADFLV_0944 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0944 PF02203 Tar ligand binding domain homologue ADFLV_0945 PF12729 Four helix bundle sensory module for signal transduction ADFLV_0945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0945 PF00672 HAMP domain ADFLV_0946 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0946 PF00672 HAMP domain ADFLV_0946 PF02203 Tar ligand binding domain homologue ADFLV_0947 PF00672 HAMP domain ADFLV_0947 PF02203 Tar ligand binding domain homologue ADFLV_0947 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_0949 PF00072 Response regulator receiver domain ADFLV_0949 PF00486 Transcriptional regulatory protein, C terminal ADFLV_0950 PF00072 Response regulator receiver domain ADFLV_0951 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_0951 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_0951 PF09308 LuxQ, periplasmic ADFLV_0951 PF00072 Response regulator receiver domain ADFLV_0954 PF13344 Haloacid dehalogenase-like hydrolase ADFLV_0954 PF00293 NUDIX domain ADFLV_0957 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ADFLV_0959 PF03480 Bacterial extracellular solute-binding protein, family 7 ADFLV_0960 PF04115 Ureidoglycolate lyase ADFLV_0962 PF02653 Branched-chain amino acid transport system / permease component ADFLV_0964 PF00005 ABC transporter ADFLV_0964 PF12399 Branched-chain amino acid ATP-binding cassette transporter ADFLV_0965 PF00005 ABC transporter ADFLV_0967 PF01774 UreD urease accessory protein ADFLV_0968 PF01979 Amidohydrolase family ADFLV_0969 PF00860 Permease family ADFLV_0971 PF01014 Uricase ADFLV_0971 PF09349 OHCU decarboxylase ADFLV_0972 PF03561 Allantoicase repeat ADFLV_0973 PF04115 Ureidoglycolate lyase ADFLV_0975 PF00576 HIUase/Transthyretin family ADFLV_0977 PF00860 Permease family ADFLV_0978 PF01979 Amidohydrolase family ADFLV_0979 PF01274 Malate synthase ADFLV_0980 PF00941 FAD binding domain in molybdopterin dehydrogenase ADFLV_0980 PF03450 CO dehydrogenase flavoprotein C-terminal domain ADFLV_0981 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ADFLV_0981 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ADFLV_0982 PF13478 XdhC Rossmann domain ADFLV_0982 PF02625 XdhC and CoxI family ADFLV_0983 PF00547 Urease, gamma subunit ADFLV_0983 PF00699 Urease beta subunit ADFLV_0984 PF00449 Urease alpha-subunit, N-terminal domain ADFLV_0984 PF01979 Amidohydrolase family ADFLV_0985 PF05194 UreE urease accessory protein, C-terminal domain ADFLV_0987 PF02492 CobW/HypB/UreG, nucleotide-binding domain ADFLV_0988 PF00873 AcrB/AcrD/AcrF family ADFLV_0989 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ADFLV_0991 PF01047 MarR family ADFLV_0993 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_0993 PF08448 PAS fold ADFLV_0994 PF03372 Endonuclease/Exonuclease/phosphatase family ADFLV_1001 PF00342 Phosphoglucose isomerase ADFLV_1002 PF00483 Nucleotidyl transferase ADFLV_1003 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ADFLV_1003 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ADFLV_1003 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ADFLV_1003 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ADFLV_1010 PF00860 Permease family ADFLV_1011 PF00156 Phosphoribosyl transferase domain ADFLV_1013 PF04241 Protein of unknown function (DUF423) ADFLV_1016 PF00860 Permease family ADFLV_1017 PF04461 Protein of unknown function (DUF520) ADFLV_1019 PF00072 Response regulator receiver domain ADFLV_1019 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1021 PF00293 NUDIX domain ADFLV_1023 PF02253 Phospholipase A1 ADFLV_1024 PF00834 Ribulose-phosphate 3 epimerase family ADFLV_1025 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ADFLV_1026 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ADFLV_1026 PF14579 Helix-hairpin-helix motif ADFLV_1026 PF02811 PHP domain ADFLV_1026 PF00929 Exonuclease ADFLV_1026 PF07733 Bacterial DNA polymerase III alpha NTPase domain ADFLV_1026 PF11490 DNA polymerase III polC-type N-terminus II ADFLV_1026 PF14480 DNA polymerase III polC-type N-terminus I ADFLV_1027 PF04607 Region found in RelA / SpoT proteins ADFLV_1027 PF02824 TGS domain ADFLV_1027 PF13291 ACT domain ADFLV_1029 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ADFLV_1030 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ADFLV_1030 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ADFLV_1030 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ADFLV_1032 PF05175 Methyltransferase small domain ADFLV_1033 PF03692 Putative zinc- or iron-chelating domain ADFLV_1035 PF00218 Indole-3-glycerol phosphate synthase ADFLV_1036 PF03466 LysR substrate binding domain ADFLV_1036 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ADFLV_1038 PF08447 PAS fold ADFLV_1038 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_1039 PF02203 Tar ligand binding domain homologue ADFLV_1039 PF00672 HAMP domain ADFLV_1039 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_1040 PF01168 Alanine racemase, N-terminal domain ADFLV_1041 PF17820 PDZ domain ADFLV_1041 PF02163 Peptidase family M50 ADFLV_1042 PF01066 CDP-alcohol phosphatidyltransferase ADFLV_1044 PF00701 Dihydrodipicolinate synthetase family ADFLV_1047 PF01180 Dihydroorotate dehydrogenase ADFLV_1048 PF00005 ABC transporter ADFLV_1048 PF00664 ABC transporter transmembrane region ADFLV_1049 PF03023 Lipid II flippase MurJ ADFLV_1051 PF02915 Rubrerythrin ADFLV_1053 PF02130 Uncharacterized protein family UPF0054 ADFLV_1054 PF18073 Rubredoxin metal binding domain ADFLV_1058 PF03797 Autotransporter beta-domain ADFLV_1062 PF00034 Cytochrome c ADFLV_1062 PF03150 Di-haem cytochrome c peroxidase ADFLV_1062 PF14376 Haem-binding domain ADFLV_1063 PF03707 Bacterial signalling protein N terminal repeat ADFLV_1063 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1063 PF00563 EAL domain ADFLV_1065 PF00448 SRP54-type protein, GTPase domain ADFLV_1066 PF00578 AhpC/TSA family ADFLV_1067 PF01812 5-formyltetrahydrofolate cyclo-ligase family ADFLV_1068 PF12072 Domain of unknown function (DUF3552) ADFLV_1068 PF01966 HD domain ADFLV_1068 PF00013 KH domain ADFLV_1070 PF12911 N-terminal TM domain of oligopeptide transport permease C ADFLV_1070 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_1072 PF00106 short chain dehydrogenase ADFLV_1074 PF02384 N-6 DNA Methylase ADFLV_1075 PF01420 Type I restriction modification DNA specificity domain ADFLV_1079 PF11867 Domain of unknown function (DUF3387) ADFLV_1079 PF18766 SWI2/SNF2 ATPase ADFLV_1079 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ADFLV_1080 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ADFLV_1082 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1082 PF00072 Response regulator receiver domain ADFLV_1083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1085 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1085 PF17151 Periplasmic sensor domain ADFLV_1086 PF09424 Yqey-like protein ADFLV_1088 PF01545 Cation efflux family ADFLV_1088 PF16916 Dimerisation domain of Zinc Transporter ADFLV_1089 PF00155 Aminotransferase class I and II ADFLV_1090 PF01863 Protein of unknown function DUF45 ADFLV_1092 PF02910 Fumarate reductase flavoprotein C-term ADFLV_1092 PF00890 FAD binding domain ADFLV_1093 PF03600 Citrate transporter ADFLV_1094 PF00958 GMP synthase C terminal domain ADFLV_1094 PF00117 Glutamine amidotransferase class-I ADFLV_1094 PF02540 NAD synthase ADFLV_1097 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ADFLV_1104 PF00892 EamA-like transporter family ADFLV_1108 PF00561 alpha/beta hydrolase fold ADFLV_1109 PF01553 Acyltransferase ADFLV_1110 PF03749 Sugar fermentation stimulation protein RE domain ADFLV_1110 PF17746 SfsA N-terminal OB domain ADFLV_1111 PF13520 Amino acid permease ADFLV_1115 PF03062 MBOAT, membrane-bound O-acyltransferase family ADFLV_1116 PF00849 RNA pseudouridylate synthase ADFLV_1117 PF00589 Phage integrase family ADFLV_1137 PF03960 ArsC family ADFLV_1139 PF03449 Transcription elongation factor, N-terminal ADFLV_1139 PF01272 Transcription elongation factor, GreA/GreB, C-term ADFLV_1140 PF17785 PUA-like domain ADFLV_1140 PF10672 S-adenosylmethionine-dependent methyltransferase ADFLV_1141 PF07690 Major Facilitator Superfamily ADFLV_1142 PF00392 Bacterial regulatory proteins, gntR family ADFLV_1142 PF07729 FCD domain ADFLV_1143 PF07690 Major Facilitator Superfamily ADFLV_1147 PF02540 NAD synthase ADFLV_1147 PF00117 Glutamine amidotransferase class-I ADFLV_1147 PF00958 GMP synthase C terminal domain ADFLV_1153 PF00571 CBS domain ADFLV_1153 PF01595 Cyclin M transmembrane N-terminal domain ADFLV_1154 PF03734 L,D-transpeptidase catalytic domain ADFLV_1154 PF01471 Putative peptidoglycan binding domain ADFLV_1156 PF01594 AI-2E family transporter ADFLV_1159 PF03471 Transporter associated domain ADFLV_1159 PF01595 Cyclin M transmembrane N-terminal domain ADFLV_1159 PF00571 CBS domain ADFLV_1162 PF00005 ABC transporter ADFLV_1162 PF17755 UvrA DNA-binding domain ADFLV_1162 PF17760 UvrA interaction domain ADFLV_1167 PF16925 Tetracyclin repressor-like, C-terminal domain ADFLV_1167 PF00440 Bacterial regulatory proteins, tetR family ADFLV_1170 PF07478 D-ala D-ala ligase C-terminus ADFLV_1170 PF01820 D-ala D-ala ligase N-terminus ADFLV_1171 PF00270 DEAD/DEAH box helicase ADFLV_1171 PF00271 Helicase conserved C-terminal domain ADFLV_1172 PF08495 FIST N domain ADFLV_1172 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1172 PF00563 EAL domain ADFLV_1172 PF10442 FIST C domain ADFLV_1173 PF08447 PAS fold ADFLV_1173 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_1174 PF00672 HAMP domain ADFLV_1174 PF02203 Tar ligand binding domain homologue ADFLV_1174 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_1177 PF00132 Bacterial transferase hexapeptide (six repeats) ADFLV_1177 PF06426 Serine acetyltransferase, N-terminal ADFLV_1178 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ADFLV_1178 PF17944 Arginine decarboxylase C-terminal helical extension ADFLV_1178 PF17810 Arginine decarboxylase helical bundle domain ADFLV_1179 PF13393 Histidyl-tRNA synthetase ADFLV_1179 PF03129 Anticodon binding domain ADFLV_1180 PF02223 Thymidylate kinase ADFLV_1181 PF01467 Cytidylyltransferase-like ADFLV_1182 PF02441 Flavoprotein ADFLV_1184 PF01281 Ribosomal protein L9, N-terminal domain ADFLV_1184 PF03948 Ribosomal protein L9, C-terminal domain ADFLV_1185 PF00227 Proteasome subunit ADFLV_1186 PF07724 AAA domain (Cdc48 subfamily) ADFLV_1186 PF10431 C-terminal, D2-small domain, of ClpB protein ADFLV_1188 PF01026 TatD related DNase ADFLV_1190 PF03330 Lytic transglycolase ADFLV_1190 PF05036 Sporulation related domain ADFLV_1191 PF00475 Imidazoleglycerol-phosphate dehydratase ADFLV_1195 PF01926 50S ribosome-binding GTPase ADFLV_1196 PF00583 Acetyltransferase (GNAT) family ADFLV_1198 PF01118 Semialdehyde dehydrogenase, NAD binding domain ADFLV_1200 PF00392 Bacterial regulatory proteins, gntR family ADFLV_1200 PF00155 Aminotransferase class I and II ADFLV_1201 PF01243 Pyridoxamine 5'-phosphate oxidase ADFLV_1203 PF00873 AcrB/AcrD/AcrF family ADFLV_1204 PF00873 AcrB/AcrD/AcrF family ADFLV_1205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ADFLV_1207 PF00581 Rhodanese-like domain ADFLV_1208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1208 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_1208 PF13426 PAS domain ADFLV_1208 PF00672 HAMP domain ADFLV_1209 PF00813 FliP family ADFLV_1210 PF03717 Penicillin-binding Protein dimerisation domain ADFLV_1210 PF05223 NTF2-like N-terminal transpeptidase domain ADFLV_1210 PF00905 Penicillin binding protein transpeptidase domain ADFLV_1215 PF05199 GMC oxidoreductase ADFLV_1215 PF00732 GMC oxidoreductase ADFLV_1217 PF03960 ArsC family ADFLV_1221 PF02491 SHS2 domain inserted in FTSA ADFLV_1222 PF00091 Tubulin/FtsZ family, GTPase domain ADFLV_1222 PF12327 FtsZ family, C-terminal domain ADFLV_1223 PF04143 Sulphur transport ADFLV_1228 PF00561 alpha/beta hydrolase fold ADFLV_1230 PF02609 Exonuclease VII small subunit ADFLV_1232 PF00899 ThiF family ADFLV_1233 PF02142 MGS-like domain ADFLV_1233 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ADFLV_1233 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ADFLV_1252 PF01751 Toprim domain ADFLV_1252 PF01131 DNA topoisomerase ADFLV_1261 PF02534 Type IV secretory system Conjugative DNA transfer ADFLV_1262 PF00437 Type II/IV secretion system protein ADFLV_1263 PF03743 Bacterial conjugation TrbI-like protein ADFLV_1264 PF03524 Conjugal transfer protein ADFLV_1271 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ADFLV_1278 PF00589 Phage integrase family ADFLV_1303 PF00149 Calcineurin-like phosphoesterase ADFLV_1306 PF12102 Domain of unknown function (DUF3578) ADFLV_1306 PF07728 AAA domain (dynein-related subfamily) ADFLV_1308 PF12102 Domain of unknown function (DUF3578) ADFLV_1308 PF07728 AAA domain (dynein-related subfamily) ADFLV_1319 PF02146 Sir2 family ADFLV_1325 PF02146 Sir2 family ADFLV_1337 PF00589 Phage integrase family ADFLV_1339 PF01867 CRISPR associated protein Cas1 ADFLV_1340 PF09827 CRISPR associated protein Cas2 ADFLV_1345 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ADFLV_1350 PF00589 Phage integrase family ADFLV_1351 PF01618 MotA/TolQ/ExbB proton channel family ADFLV_1352 PF13677 Membrane MotB of proton-channel complex MotA/MotB ADFLV_1352 PF00691 OmpA family ADFLV_1353 PF03741 Integral membrane protein TerC family ADFLV_1354 PF03600 Citrate transporter ADFLV_1360 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit ADFLV_1364 PF00005 ABC transporter ADFLV_1365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ADFLV_1366 PF13411 MerR HTH family regulatory protein ADFLV_1367 PF00226 DnaJ domain ADFLV_1367 PF01556 DnaJ C terminal domain ADFLV_1368 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_1368 PF00989 PAS fold ADFLV_1368 PF08447 PAS fold ADFLV_1368 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1370 PF00072 Response regulator receiver domain ADFLV_1372 PF01266 FAD dependent oxidoreductase ADFLV_1372 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ADFLV_1375 PF00216 Bacterial DNA-binding protein ADFLV_1377 PF01795 MraW methylase family ADFLV_1379 PF00873 AcrB/AcrD/AcrF family ADFLV_1383 PF13193 AMP-binding enzyme C-terminal domain ADFLV_1383 PF00501 AMP-binding enzyme ADFLV_1384 PF13941 MutL protein ADFLV_1385 PF06368 Methylaspartate mutase E chain (MutE) ADFLV_1386 PF02310 B12 binding domain ADFLV_1387 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ADFLV_1387 PF00056 lactate/malate dehydrogenase, NAD binding domain ADFLV_1388 PF03971 Monomeric isocitrate dehydrogenase ADFLV_1391 PF12704 MacB-like periplasmic core domain ADFLV_1391 PF02687 FtsX-like permease family ADFLV_1392 PF07517 SecA DEAD-like domain ADFLV_1392 PF02810 SEC-C motif ADFLV_1392 PF00271 Helicase conserved C-terminal domain ADFLV_1392 PF07516 SecA Wing and Scaffold domain ADFLV_1392 PF01043 SecA preprotein cross-linking domain ADFLV_1395 PF12833 Helix-turn-helix domain ADFLV_1396 PF00465 Iron-containing alcohol dehydrogenase ADFLV_1398 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_1398 PF00497 Bacterial extracellular solute-binding proteins, family 3 ADFLV_1398 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1399 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ADFLV_1401 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ADFLV_1401 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ADFLV_1401 PF04324 BFD-like [2Fe-2S] binding domain ADFLV_1401 PF07992 Pyridine nucleotide-disulphide oxidoreductase ADFLV_1401 PF18267 Rubredoxin NAD+ reductase C-terminal domain ADFLV_1402 PF04324 BFD-like [2Fe-2S] binding domain ADFLV_1402 PF01568 Molydopterin dinucleotide binding domain ADFLV_1402 PF00384 Molybdopterin oxidoreductase ADFLV_1402 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ADFLV_1403 PF08495 FIST N domain ADFLV_1403 PF10442 FIST C domain ADFLV_1403 PF00563 EAL domain ADFLV_1403 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1404 PF03793 PASTA domain ADFLV_1404 PF00069 Protein kinase domain ADFLV_1405 PF07690 Major Facilitator Superfamily ADFLV_1406 PF03738 Glutathionylspermidine synthase preATP-grasp ADFLV_1408 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1408 PF08448 PAS fold ADFLV_1409 PF02463 RecF/RecN/SMC N terminal domain ADFLV_1414 PF07568 Histidine kinase ADFLV_1414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1414 PF12282 Signal transduction histidine kinase ADFLV_1415 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1415 PF00072 Response regulator receiver domain ADFLV_1417 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1417 PF00072 Response regulator receiver domain ADFLV_1434 PF06250 YhcG PDDEXK nuclease domain ADFLV_1434 PF17761 DUF1016 N-terminal domain ADFLV_1444 PF01022 Bacterial regulatory protein, arsR family ADFLV_1469 PF08501 Shikimate dehydrogenase substrate binding domain ADFLV_1472 PF03949 Malic enzyme, NAD binding domain ADFLV_1472 PF00390 Malic enzyme, N-terminal domain ADFLV_1472 PF01515 Phosphate acetyl/butaryl transferase ADFLV_1473 PF01842 ACT domain ADFLV_1473 PF00551 Formyl transferase ADFLV_1474 PF00588 SpoU rRNA Methylase family ADFLV_1477 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1477 PF00072 Response regulator receiver domain ADFLV_1479 PF16200 C-terminal region of band_7 ADFLV_1479 PF01145 SPFH domain / Band 7 family ADFLV_1483 PF01654 Cytochrome bd terminal oxidase subunit I ADFLV_1488 PF10417 C-terminal domain of 1-Cys peroxiredoxin ADFLV_1488 PF00578 AhpC/TSA family ADFLV_1491 PF01618 MotA/TolQ/ExbB proton channel family ADFLV_1492 PF02472 Biopolymer transport protein ExbD/TolR ADFLV_1495 PF13476 AAA domain ADFLV_1500 PF03737 Aldolase/RraA ADFLV_1501 PF05971 RNA methyltransferase ADFLV_1502 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ADFLV_1503 PF00849 RNA pseudouridylate synthase ADFLV_1503 PF01479 S4 domain ADFLV_1505 PF13419 Haloacid dehalogenase-like hydrolase ADFLV_1509 PF07715 TonB-dependent Receptor Plug Domain ADFLV_1509 PF00593 TonB dependent receptor ADFLV_1510 PF01497 Periplasmic binding protein ADFLV_1511 PF00005 ABC transporter ADFLV_1512 PF01032 FecCD transport family ADFLV_1517 PF00248 Aldo/keto reductase family ADFLV_1518 PF00672 HAMP domain ADFLV_1518 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_1518 PF02203 Tar ligand binding domain homologue ADFLV_1521 PF03061 Thioesterase superfamily ADFLV_1523 PF16491 CAAX prenyl protease N-terminal, five membrane helices ADFLV_1523 PF01435 Peptidase family M48 ADFLV_1524 PF02646 RmuC family ADFLV_1526 PF04228 Putative neutral zinc metallopeptidase ADFLV_1528 PF00994 Probable molybdopterin binding domain ADFLV_1528 PF03454 MoeA C-terminal region (domain IV) ADFLV_1528 PF03453 MoeA N-terminal region (domain I and II) ADFLV_1531 PF01171 PP-loop family ADFLV_1532 PF04463 Protein of unknown function (DUF523) ADFLV_1533 PF00085 Thioredoxin ADFLV_1536 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1536 PF00563 EAL domain ADFLV_1536 PF01590 GAF domain ADFLV_1536 PF00360 Phytochrome region ADFLV_1538 PF02541 Ppx/GppA phosphatase family ADFLV_1540 PF00205 Thiamine pyrophosphate enzyme, central domain ADFLV_1540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ADFLV_1540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ADFLV_1541 PF10369 Small subunit of acetolactate synthase ADFLV_1542 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ADFLV_1542 PF00132 Bacterial transferase hexapeptide (six repeats) ADFLV_1543 PF17854 FtsK alpha domain ADFLV_1543 PF09397 Ftsk gamma domain ADFLV_1543 PF01580 FtsK/SpoIIIE family ADFLV_1544 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ADFLV_1544 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ADFLV_1545 PF01926 50S ribosome-binding GTPase ADFLV_1545 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ADFLV_1546 PF01740 STAS domain ADFLV_1546 PF00916 Sulfate permease family ADFLV_1548 PF02843 Phosphoribosylglycinamide synthetase, C domain ADFLV_1548 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ADFLV_1548 PF02844 Phosphoribosylglycinamide synthetase, N domain ADFLV_1550 PF03968 OstA-like protein ADFLV_1550 PF04453 LPS transport system D ADFLV_1552 PF00575 S1 RNA binding domain ADFLV_1552 PF03725 3' exoribonuclease family, domain 2 ADFLV_1552 PF01138 3' exoribonuclease family, domain 1 ADFLV_1552 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ADFLV_1552 PF00013 KH domain ADFLV_1553 PF00072 Response regulator receiver domain ADFLV_1554 PF02895 Signal transducing histidine kinase, homodimeric domain ADFLV_1554 PF01584 CheW-like domain ADFLV_1554 PF01627 Hpt domain ADFLV_1554 PF09078 CheY binding ADFLV_1554 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1555 PF03705 CheR methyltransferase, all-alpha domain ADFLV_1555 PF01739 CheR methyltransferase, SAM binding domain ADFLV_1556 PF03975 CheD chemotactic sensory transduction ADFLV_1557 PF01339 CheB methylesterase ADFLV_1557 PF00072 Response regulator receiver domain ADFLV_1559 PF00589 Phage integrase family ADFLV_1559 PF18644 Phage integrase SAM-like domain ADFLV_1563 PF01432 Peptidase family M3 ADFLV_1564 PF05175 Methyltransferase small domain ADFLV_1564 PF17827 PrmC N-terminal domain ADFLV_1565 PF04055 Radical SAM superfamily ADFLV_1565 PF06969 HemN C-terminal domain ADFLV_1566 PF00293 NUDIX domain ADFLV_1567 PF00696 Amino acid kinase family ADFLV_1567 PF01842 ACT domain ADFLV_1567 PF13840 ACT domain ADFLV_1570 PF00809 Pterin binding enzyme ADFLV_1571 PF01842 ACT domain ADFLV_1571 PF02153 Prephenate dehydrogenase ADFLV_1572 PF01103 Surface antigen ADFLV_1572 PF07244 Surface antigen variable number repeat ADFLV_1573 PF04055 Radical SAM superfamily ADFLV_1574 PF05193 Peptidase M16 inactive domain ADFLV_1575 PF00749 tRNA synthetases class I (E and Q), catalytic domain ADFLV_1581 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ADFLV_1583 PF00133 tRNA synthetases class I (I, L, M and V) ADFLV_1583 PF09334 tRNA synthetases class I (M) ADFLV_1583 PF01588 Putative tRNA binding domain ADFLV_1588 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit ADFLV_1589 PF01293 Phosphoenolpyruvate carboxykinase ADFLV_1591 PF00925 GTP cyclohydrolase II ADFLV_1591 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ADFLV_1600 PF02899 Phage integrase, N-terminal SAM-like domain ADFLV_1600 PF00589 Phage integrase family ADFLV_1613 PF00296 Luciferase-like monooxygenase ADFLV_1614 PF02092 Glycyl-tRNA synthetase beta subunit ADFLV_1619 PF02527 rRNA small subunit methyltransferase G ADFLV_1620 PF00925 GTP cyclohydrolase II ADFLV_1621 PF00490 Delta-aminolevulinic acid dehydratase ADFLV_1622 PF08448 PAS fold ADFLV_1622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1622 PF08447 PAS fold ADFLV_1623 PF00072 Response regulator receiver domain ADFLV_1623 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1626 PF03477 ATP cone domain ADFLV_1626 PF02867 Ribonucleotide reductase, barrel domain ADFLV_1626 PF00317 Ribonucleotide reductase, all-alpha domain ADFLV_1627 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ADFLV_1627 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ADFLV_1628 PF04055 Radical SAM superfamily ADFLV_1628 PF06969 HemN C-terminal domain ADFLV_1630 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ADFLV_1631 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ADFLV_1632 PF02540 NAD synthase ADFLV_1636 PF05099 Tellurite resistance protein TerB ADFLV_1636 PF00226 DnaJ domain ADFLV_1637 PF02416 mttA/Hcf106 family ADFLV_1638 PF00902 Sec-independent protein translocase protein (TatC) ADFLV_1639 PF02547 Queuosine biosynthesis protein ADFLV_1643 PF12867 DinB superfamily ADFLV_1643 PF03781 Sulfatase-modifying factor enzyme 1 ADFLV_1646 PF03737 Aldolase/RraA ADFLV_1649 PF01790 Prolipoprotein diacylglyceryl transferase ADFLV_1653 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ADFLV_1653 PF00476 DNA polymerase family A ADFLV_1653 PF01367 5'-3' exonuclease, C-terminal SAM fold ADFLV_1654 PF02348 Cytidylyltransferase ADFLV_1655 PF08495 FIST N domain ADFLV_1655 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1655 PF00563 EAL domain ADFLV_1655 PF10442 FIST C domain ADFLV_1656 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1656 PF08448 PAS fold ADFLV_1657 PF12399 Branched-chain amino acid ATP-binding cassette transporter ADFLV_1657 PF00005 ABC transporter ADFLV_1658 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ADFLV_1659 PF02885 Glycosyl transferase family, helical bundle domain ADFLV_1659 PF00591 Glycosyl transferase family, a/b domain ADFLV_1661 PF00764 Arginosuccinate synthase ADFLV_1663 PF08443 RimK-like ATP-grasp domain ADFLV_1663 PF18030 RimK PreATP-grasp domain ADFLV_1666 PF00132 Bacterial transferase hexapeptide (six repeats) ADFLV_1667 PF02254 TrkA-N domain ADFLV_1667 PF02080 TrkA-C domain ADFLV_1668 PF02386 Cation transport protein ADFLV_1669 PF00072 Response regulator receiver domain ADFLV_1669 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1670 PF13493 Domain of unknown function (DUF4118) ADFLV_1670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1670 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_1670 PF02702 Osmosensitive K+ channel His kinase sensor domain ADFLV_1672 PF00989 PAS fold ADFLV_1672 PF08447 PAS fold ADFLV_1672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1672 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_1674 PF13662 Toprim domain ADFLV_1674 PF02132 RecR protein ADFLV_1676 PF00684 DnaJ central domain ADFLV_1676 PF01556 DnaJ C terminal domain ADFLV_1676 PF00226 DnaJ domain ADFLV_1677 PF00291 Pyridoxal-phosphate dependent enzyme ADFLV_1681 PF00753 Metallo-beta-lactamase superfamily ADFLV_1682 PF08447 PAS fold ADFLV_1682 PF00563 EAL domain ADFLV_1682 PF08448 PAS fold ADFLV_1682 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1683 PF00360 Phytochrome region ADFLV_1683 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1683 PF01590 GAF domain ADFLV_1683 PF00563 EAL domain ADFLV_1684 PF08003 Protein of unknown function (DUF1698) ADFLV_1685 PF05140 ResB-like family ADFLV_1685 PF01578 Cytochrome C assembly protein ADFLV_1686 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1686 PF00072 Response regulator receiver domain ADFLV_1687 PF08448 PAS fold ADFLV_1687 PF08447 PAS fold ADFLV_1687 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1688 PF07687 Peptidase dimerisation domain ADFLV_1688 PF01546 Peptidase family M20/M25/M40 ADFLV_1690 PF00672 HAMP domain ADFLV_1690 PF02203 Tar ligand binding domain homologue ADFLV_1690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_1691 PF12826 Helix-hairpin-helix motif ADFLV_1691 PF00533 BRCA1 C Terminus (BRCT) domain ADFLV_1691 PF03120 NAD-dependent DNA ligase OB-fold domain ADFLV_1691 PF01653 NAD-dependent DNA ligase adenylation domain ADFLV_1692 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_1692 PF00672 HAMP domain ADFLV_1692 PF01627 Hpt domain ADFLV_1692 PF00072 Response regulator receiver domain ADFLV_1692 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ADFLV_1692 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1693 PF00072 Response regulator receiver domain ADFLV_1693 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1694 PF11849 Domain of unknown function (DUF3369) ADFLV_1695 PF03061 Thioesterase superfamily ADFLV_1696 PF00005 ABC transporter ADFLV_1696 PF12848 ABC transporter ADFLV_1698 PF00465 Iron-containing alcohol dehydrogenase ADFLV_1699 PF12833 Helix-turn-helix domain ADFLV_1699 PF06719 AraC-type transcriptional regulator N-terminus ADFLV_1700 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1701 PF00072 Response regulator receiver domain ADFLV_1701 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1702 PF01627 Hpt domain ADFLV_1702 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1702 PF01584 CheW-like domain ADFLV_1702 PF02895 Signal transducing histidine kinase, homodimeric domain ADFLV_1702 PF09078 CheY binding ADFLV_1704 PF02702 Osmosensitive K+ channel His kinase sensor domain ADFLV_1704 PF13493 Domain of unknown function (DUF4118) ADFLV_1704 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1704 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_1705 PF08448 PAS fold ADFLV_1705 PF08447 PAS fold ADFLV_1705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1707 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1708 PF00881 Nitroreductase family ADFLV_1710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ADFLV_1712 PF02525 Flavodoxin-like fold ADFLV_1713 PF01638 HxlR-like helix-turn-helix ADFLV_1716 PF03601 Conserved hypothetical protein 698 ADFLV_1717 PF03466 LysR substrate binding domain ADFLV_1717 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ADFLV_1718 PF07694 5TMR of 5TMR-LYT ADFLV_1718 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1719 PF01161 Phosphatidylethanolamine-binding protein ADFLV_1721 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1724 PF00893 Small Multidrug Resistance protein ADFLV_1727 PF08448 PAS fold ADFLV_1727 PF08447 PAS fold ADFLV_1727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1729 PF16925 Tetracyclin repressor-like, C-terminal domain ADFLV_1729 PF00440 Bacterial regulatory proteins, tetR family ADFLV_1731 PF08274 PhnA Zinc-Ribbon ADFLV_1731 PF03831 PhnA domain ADFLV_1732 PF00107 Zinc-binding dehydrogenase ADFLV_1732 PF08240 Alcohol dehydrogenase GroES-like domain ADFLV_1733 PF04055 Radical SAM superfamily ADFLV_1734 PF10437 Bacterial lipoate protein ligase C-terminus ADFLV_1734 PF03099 Biotin/lipoate A/B protein ligase family ADFLV_1735 PF17831 Pyruvate dehydrogenase E1 component middle domain ADFLV_1735 PF00456 Transketolase, thiamine diphosphate binding domain ADFLV_1736 PF00364 Biotin-requiring enzyme ADFLV_1736 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ADFLV_1736 PF02817 e3 binding domain ADFLV_1737 PF07992 Pyridine nucleotide-disulphide oxidoreductase ADFLV_1737 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ADFLV_1739 PF00072 Response regulator receiver domain ADFLV_1739 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1748 PF01817 Chorismate mutase type II ADFLV_1748 PF00800 Prephenate dehydratase ADFLV_1749 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ADFLV_1750 PF00005 ABC transporter ADFLV_1751 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1751 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_1751 PF09456 RcsC Alpha-Beta-Loop (ABL) ADFLV_1751 PF00072 Response regulator receiver domain ADFLV_1752 PF00989 PAS fold ADFLV_1752 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_1752 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1753 PF01546 Peptidase family M20/M25/M40 ADFLV_1753 PF07687 Peptidase dimerisation domain ADFLV_1757 PF01713 Smr domain ADFLV_1757 PF00488 MutS domain V ADFLV_1759 PF00939 Sodium:sulfate symporter transmembrane region ADFLV_1760 PF00994 Probable molybdopterin binding domain ADFLV_1762 PF00004 ATPase family associated with various cellular activities (AAA) ADFLV_1762 PF01434 Peptidase family M41 ADFLV_1762 PF06480 FtsH Extracellular ADFLV_1762 PF17862 AAA+ lid domain ADFLV_1763 PF04055 Radical SAM superfamily ADFLV_1763 PF00919 Uncharacterized protein family UPF0004 ADFLV_1765 PF01761 3-dehydroquinate synthase ADFLV_1769 PF00196 Bacterial regulatory proteins, luxR family ADFLV_1769 PF17874 MalT-like TPR region ADFLV_1771 PF03412 Peptidase C39 family ADFLV_1771 PF00005 ABC transporter ADFLV_1771 PF00664 ABC transporter transmembrane region ADFLV_1772 PF00691 OmpA family ADFLV_1772 PF05736 OprF membrane domain ADFLV_1774 PF00072 Response regulator receiver domain ADFLV_1774 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1775 PF08448 PAS fold ADFLV_1775 PF08447 PAS fold ADFLV_1775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1779 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1780 PF00762 Ferrochelatase ADFLV_1782 PF04397 LytTr DNA-binding domain ADFLV_1782 PF00072 Response regulator receiver domain ADFLV_1783 PF07694 5TMR of 5TMR-LYT ADFLV_1783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1783 PF06580 Histidine kinase ADFLV_1784 PF02146 Sir2 family ADFLV_1785 PF01593 Flavin containing amine oxidoreductase ADFLV_1788 PF00929 Exonuclease ADFLV_1790 PF00700 Bacterial flagellin C-terminal helical region ADFLV_1790 PF00669 Bacterial flagellin N-terminal helical region ADFLV_1790 PF07196 Flagellin hook IN motif ADFLV_1793 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1794 PF00486 Transcriptional regulatory protein, C terminal ADFLV_1794 PF00072 Response regulator receiver domain ADFLV_1798 PF00005 ABC transporter ADFLV_1798 PF00664 ABC transporter transmembrane region ADFLV_1799 PF01594 AI-2E family transporter ADFLV_1800 PF00933 Glycosyl hydrolase family 3 N terminal domain ADFLV_1800 PF01915 Glycosyl hydrolase family 3 C-terminal domain ADFLV_1805 PF02652 L-lactate permease ADFLV_1806 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_1806 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_1808 PF00226 DnaJ domain ADFLV_1808 PF01556 DnaJ C terminal domain ADFLV_1808 PF00684 DnaJ central domain ADFLV_1814 PF00072 Response regulator receiver domain ADFLV_1814 PF02954 Bacterial regulatory protein, Fis family ADFLV_1814 PF00158 Sigma-54 interaction domain ADFLV_1817 PF03641 Possible lysine decarboxylase ADFLV_1818 PF00571 CBS domain ADFLV_1818 PF00478 IMP dehydrogenase / GMP reductase domain ADFLV_1819 PF01425 Amidase ADFLV_1820 PF01196 Ribosomal protein L17 ADFLV_1821 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ADFLV_1821 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ADFLV_1821 PF01000 RNA polymerase Rpb3/RpoA insert domain ADFLV_1822 PF00163 Ribosomal protein S4/S9 N-terminal domain ADFLV_1822 PF01479 S4 domain ADFLV_1823 PF00411 Ribosomal protein S11 ADFLV_1824 PF00416 Ribosomal protein S13/S18 ADFLV_1827 PF00180 Isocitrate/isopropylmalate dehydrogenase ADFLV_1828 PF00589 Phage integrase family ADFLV_1835 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ADFLV_1842 PF03524 Conjugal transfer protein ADFLV_1843 PF03743 Bacterial conjugation TrbI-like protein ADFLV_1844 PF00437 Type II/IV secretion system protein ADFLV_1845 PF02534 Type IV secretory system Conjugative DNA transfer ADFLV_1854 PF01751 Toprim domain ADFLV_1854 PF01131 DNA topoisomerase ADFLV_1871 PF00694 Aconitase C-terminal domain ADFLV_1872 PF04545 Sigma-70, region 4 ADFLV_1872 PF00140 Sigma-70 factor, region 1.2 ADFLV_1872 PF04542 Sigma-70 region 2 ADFLV_1872 PF04539 Sigma-70 region 3 ADFLV_1876 PF06865 Pyrimidine/purine nucleoside phosphorylase ADFLV_1877 PF00202 Aminotransferase class-III ADFLV_1880 PF01098 Cell cycle protein ADFLV_1881 PF00849 RNA pseudouridylate synthase ADFLV_1881 PF01479 S4 domain ADFLV_1882 PF02903 Alpha amylase, N-terminal ig-like domain ADFLV_1882 PF00128 Alpha amylase, catalytic domain ADFLV_1883 PF02390 Putative methyltransferase ADFLV_1884 PF00005 ABC transporter ADFLV_1887 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ADFLV_1889 PF00005 ABC transporter ADFLV_1889 PF12848 ABC transporter ADFLV_1889 PF16326 ABC transporter C-terminal domain ADFLV_1890 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ADFLV_1890 PF14602 Hexapeptide repeat of succinyl-transferase ADFLV_1891 PF18074 Primosomal protein N C-terminal domain ADFLV_1891 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ADFLV_1891 PF00270 DEAD/DEAH box helicase ADFLV_1891 PF00271 Helicase conserved C-terminal domain ADFLV_1896 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1896 PF08448 PAS fold ADFLV_1897 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ADFLV_1898 PF00586 AIR synthase related protein, N-terminal domain ADFLV_1898 PF02769 AIR synthase related protein, C-terminal domain ADFLV_1901 PF01924 Hydrogenase formation hypA family ADFLV_1902 PF01455 HupF/HypC family ADFLV_1903 PF02492 CobW/HypB/UreG, nucleotide-binding domain ADFLV_1906 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_1906 PF02203 Tar ligand binding domain homologue ADFLV_1906 PF00672 HAMP domain ADFLV_1909 PF00893 Small Multidrug Resistance protein ADFLV_1911 PF01425 Amidase ADFLV_1912 PF02785 Biotin carboxylase C-terminal domain ADFLV_1912 PF00289 Biotin carboxylase, N-terminal domain ADFLV_1912 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ADFLV_1915 PF00005 ABC transporter ADFLV_1918 PF05661 Protein of unknown function (DUF808) ADFLV_1920 PF12823 Domain of unknown function (DUF3817) ADFLV_1924 PF02568 Thiamine biosynthesis protein (ThiI) ADFLV_1924 PF02926 THUMP domain ADFLV_1927 PF00999 Sodium/hydrogen exchanger family ADFLV_1927 PF03471 Transporter associated domain ADFLV_1927 PF02080 TrkA-C domain ADFLV_1928 PF07556 Protein of unknown function (DUF1538) ADFLV_1929 PF00571 CBS domain ADFLV_1934 PF00708 Acylphosphatase ADFLV_1934 PF17788 HypF Kae1-like domain ADFLV_1934 PF01300 Telomere recombination ADFLV_1934 PF07503 HypF finger ADFLV_1937 PF01867 CRISPR associated protein Cas1 ADFLV_1939 PF18019 HD domain ADFLV_1939 PF00270 DEAD/DEAH box helicase ADFLV_1939 PF18395 Cas3 C-terminal domain ADFLV_1946 PF01750 Hydrogenase maturation protease ADFLV_1947 PF01292 Prokaryotic cytochrome b561 ADFLV_1948 PF00374 Nickel-dependent hydrogenase ADFLV_1949 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ADFLV_1949 PF10518 TAT (twin-arginine translocation) pathway signal sequence ADFLV_1949 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ADFLV_1951 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ADFLV_1951 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ADFLV_1954 PF00330 Aconitase family (aconitate hydratase) ADFLV_1954 PF11791 Aconitate B N-terminal domain ADFLV_1954 PF06434 Aconitate hydratase 2 N-terminus ADFLV_1957 PF01327 Polypeptide deformylase ADFLV_1958 PF00501 AMP-binding enzyme ADFLV_1959 PF00108 Thiolase, N-terminal domain ADFLV_1959 PF02803 Thiolase, C-terminal domain ADFLV_1960 PF00378 Enoyl-CoA hydratase/isomerase ADFLV_1960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ADFLV_1960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADFLV_1961 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ADFLV_1961 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ADFLV_1961 PF09317 Domain of unknown function (DUF1974) ADFLV_1969 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_1969 PF03707 Bacterial signalling protein N terminal repeat ADFLV_1969 PF00563 EAL domain ADFLV_1973 PF01709 Transcriptional regulator ADFLV_1974 PF04333 MlaA lipoprotein ADFLV_1977 PF03641 Possible lysine decarboxylase ADFLV_1978 PF13419 Haloacid dehalogenase-like hydrolase ADFLV_1979 PF08534 Redoxin ADFLV_1983 PF02600 Disulfide bond formation protein DsbB ADFLV_1986 PF03737 Aldolase/RraA ADFLV_1988 PF02028 BCCT, betaine/carnitine/choline family transporter ADFLV_1989 PF07690 Major Facilitator Superfamily ADFLV_1993 PF00999 Sodium/hydrogen exchanger family ADFLV_1993 PF02254 TrkA-N domain ADFLV_1995 PF00464 Serine hydroxymethyltransferase ADFLV_1996 PF12833 Helix-turn-helix domain ADFLV_1996 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ADFLV_1996 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ADFLV_1996 PF02805 Metal binding domain of Ada ADFLV_2014 PF00464 Serine hydroxymethyltransferase ADFLV_2015 PF00202 Aminotransferase class-III ADFLV_2016 PF03473 MOSC domain ADFLV_2018 PF01263 Aldose 1-epimerase ADFLV_2019 PF00905 Penicillin binding protein transpeptidase domain ADFLV_2020 PF00271 Helicase conserved C-terminal domain ADFLV_2020 PF00270 DEAD/DEAH box helicase ADFLV_2026 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ADFLV_2026 PF18381 YcaO cyclodehydratase C-terminal domain ADFLV_2029 PF02203 Tar ligand binding domain homologue ADFLV_2029 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2029 PF00672 HAMP domain ADFLV_2030 PF00075 RNase H ADFLV_2031 PF00682 HMGL-like ADFLV_2031 PF07836 DmpG-like communication domain ADFLV_2034 PF00817 impB/mucB/samB family ADFLV_2034 PF11798 IMS family HHH motif ADFLV_2034 PF11799 impB/mucB/samB family C-terminal domain ADFLV_2036 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ADFLV_2036 PF10518 TAT (twin-arginine translocation) pathway signal sequence ADFLV_2036 PF07992 Pyridine nucleotide-disulphide oxidoreductase ADFLV_2042 PF00072 Response regulator receiver domain ADFLV_2043 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2043 PF08447 PAS fold ADFLV_2043 PF08448 PAS fold ADFLV_2044 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ADFLV_2044 PF00072 Response regulator receiver domain ADFLV_2044 PF01627 Hpt domain ADFLV_2044 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_2044 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2044 PF00672 HAMP domain ADFLV_2050 PF08447 PAS fold ADFLV_2050 PF08448 PAS fold ADFLV_2050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2052 PF00563 EAL domain ADFLV_2052 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2052 PF08448 PAS fold ADFLV_2055 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ADFLV_2055 PF01243 Pyridoxamine 5'-phosphate oxidase ADFLV_2058 PF03707 Bacterial signalling protein N terminal repeat ADFLV_2058 PF00563 EAL domain ADFLV_2058 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2059 PF03880 DbpA RNA binding domain ADFLV_2059 PF00270 DEAD/DEAH box helicase ADFLV_2059 PF00271 Helicase conserved C-terminal domain ADFLV_2062 PF10442 FIST C domain ADFLV_2062 PF08495 FIST N domain ADFLV_2062 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2062 PF00563 EAL domain ADFLV_2064 PF02626 Carboxyltransferase domain, subdomain A and B ADFLV_2066 PF03746 LamB/YcsF family ADFLV_2071 PF00005 ABC transporter ADFLV_2072 PF13533 Biotin-lipoyl like ADFLV_2073 PF00440 Bacterial regulatory proteins, tetR family ADFLV_2073 PF08361 MAATS-type transcriptional repressor, C-terminal region ADFLV_2074 PF01384 Phosphate transporter family ADFLV_2076 PF00183 Hsp90 protein ADFLV_2077 PF00230 Major intrinsic protein ADFLV_2082 PF04403 Paraquat-inducible protein A ADFLV_2085 PF00563 EAL domain ADFLV_2085 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2085 PF08448 PAS fold ADFLV_2089 PF05088 Bacterial NAD-glutamate dehydrogenase ADFLV_2090 PF04073 Aminoacyl-tRNA editing domain ADFLV_2091 PF08713 DNA alkylation repair enzyme ADFLV_2095 PF00593 TonB dependent receptor ADFLV_2095 PF07660 Secretin and TonB N terminus short domain ADFLV_2095 PF07715 TonB-dependent Receptor Plug Domain ADFLV_2098 PF00491 Arginase family ADFLV_2099 PF08502 LeuA allosteric (dimerisation) domain ADFLV_2099 PF00682 HMGL-like ADFLV_2100 PF12833 Helix-turn-helix domain ADFLV_2101 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ADFLV_2104 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ADFLV_2104 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ADFLV_2105 PF02833 DHHA2 domain ADFLV_2105 PF01368 DHH family ADFLV_2108 PF00206 Lyase ADFLV_2108 PF10415 Fumarase C C-terminus ADFLV_2109 PF00486 Transcriptional regulatory protein, C terminal ADFLV_2109 PF00072 Response regulator receiver domain ADFLV_2110 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_2110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2110 PF02743 Cache domain ADFLV_2111 PF01235 Sodium:alanine symporter family ADFLV_2112 PF01048 Phosphorylase superfamily ADFLV_2113 PF00698 Acyl transferase domain ADFLV_2114 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ADFLV_2116 PF01389 OmpA-like transmembrane domain ADFLV_2116 PF00691 OmpA family ADFLV_2117 PF00210 Ferritin-like domain ADFLV_2118 PF04052 TolB amino-terminal domain ADFLV_2120 PF02472 Biopolymer transport protein ExbD/TolR ADFLV_2121 PF01618 MotA/TolQ/ExbB proton channel family ADFLV_2122 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ADFLV_2123 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ADFLV_2123 PF02874 ATP synthase alpha/beta family, beta-barrel domain ADFLV_2124 PF00231 ATP synthase ADFLV_2125 PF02874 ATP synthase alpha/beta family, beta-barrel domain ADFLV_2125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ADFLV_2125 PF00306 ATP synthase alpha/beta chain, C terminal domain ADFLV_2126 PF00213 ATP synthase delta (OSCP) subunit ADFLV_2127 PF00430 ATP synthase B/B' CF(0) ADFLV_2129 PF17762 HTH domain found in ParB protein ADFLV_2129 PF02195 ParB-like nuclease domain ADFLV_2130 PF13614 AAA domain ADFLV_2131 PF08279 HTH domain ADFLV_2131 PF03099 Biotin/lipoate A/B protein ligase family ADFLV_2131 PF02237 Biotin protein ligase C terminal domain ADFLV_2133 PF00551 Formyl transferase ADFLV_2133 PF02911 Formyl transferase, C-terminal domain ADFLV_2134 PF00696 Amino acid kinase family ADFLV_2135 PF01018 GTP1/OBG ADFLV_2135 PF01926 50S ribosome-binding GTPase ADFLV_2136 PF01016 Ribosomal L27 protein ADFLV_2137 PF00829 Ribosomal prokaryotic L21 protein ADFLV_2138 PF01042 Endoribonuclease L-PSP ADFLV_2139 PF13662 Toprim domain ADFLV_2139 PF01807 CHC2 zinc finger ADFLV_2139 PF08275 DNA primase catalytic core, N-terminal domain ADFLV_2139 PF16730 DnaG-primase C-terminal, helicase-binding domain ADFLV_2141 PF14622 Ribonuclease-III-like ADFLV_2141 PF00035 Double-stranded RNA binding motif ADFLV_2142 PF01264 Chorismate synthase ADFLV_2144 PF01435 Peptidase family M48 ADFLV_2146 PF00300 Histidine phosphatase superfamily (branch 1) ADFLV_2148 PF12631 MnmE helical domain ADFLV_2148 PF01926 50S ribosome-binding GTPase ADFLV_2148 PF10396 GTP-binding protein TrmE N-terminus ADFLV_2150 PF02096 60Kd inner membrane protein ADFLV_2150 PF14849 YidC periplasmic domain ADFLV_2151 PF01809 Putative membrane protein insertion efficiency factor ADFLV_2152 PF00468 Ribosomal protein L34 ADFLV_2153 PF10431 C-terminal, D2-small domain, of ClpB protein ADFLV_2153 PF02861 Clp amino terminal domain, pathogenicity island component ADFLV_2153 PF17871 AAA lid domain ADFLV_2153 PF07724 AAA domain (Cdc48 subfamily) ADFLV_2153 PF00004 ATPase family associated with various cellular activities (AAA) ADFLV_2154 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2154 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_2156 PF01351 Ribonuclease HII ADFLV_2159 PF01625 Peptide methionine sulfoxide reductase ADFLV_2163 PF00005 ABC transporter ADFLV_2168 PF01209 ubiE/COQ5 methyltransferase family ADFLV_2170 PF01618 MotA/TolQ/ExbB proton channel family ADFLV_2171 PF02472 Biopolymer transport protein ExbD/TolR ADFLV_2172 PF03544 Gram-negative bacterial TonB protein C-terminal ADFLV_2173 PF00313 'Cold-shock' DNA-binding domain ADFLV_2174 PF01641 SelR domain ADFLV_2175 PF00072 Response regulator receiver domain ADFLV_2176 PF00072 Response regulator receiver domain ADFLV_2176 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2177 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_2177 PF00072 Response regulator receiver domain ADFLV_2177 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2177 PF09308 LuxQ, periplasmic ADFLV_2178 PF01557 Fumarylacetoacetate (FAA) hydrolase family ADFLV_2182 PF00202 Aminotransferase class-III ADFLV_2183 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2183 PF08448 PAS fold ADFLV_2183 PF08447 PAS fold ADFLV_2184 PF02142 MGS-like domain ADFLV_2184 PF01808 AICARFT/IMPCHase bienzyme ADFLV_2185 PF00909 Ammonium Transporter Family ADFLV_2186 PF00586 AIR synthase related protein, N-terminal domain ADFLV_2186 PF02769 AIR synthase related protein, C-terminal domain ADFLV_2186 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ADFLV_2188 PF10145 Phage-related minor tail protein ADFLV_2188 PF01551 Peptidase family M23 ADFLV_2188 PF01464 Transglycosylase SLT domain ADFLV_2190 PF00583 Acetyltransferase (GNAT) family ADFLV_2191 PF00202 Aminotransferase class-III ADFLV_2192 PF06339 Ectoine synthase ADFLV_2193 PF05721 Phytanoyl-CoA dioxygenase (PhyH) ADFLV_2194 PF01227 GTP cyclohydrolase I ADFLV_2195 PF01544 CorA-like Mg2+ transporter protein ADFLV_2196 PF00482 Type II secretion system (T2SS), protein F ADFLV_2197 PF00437 Type II/IV secretion system protein ADFLV_2200 PF01926 50S ribosome-binding GTPase ADFLV_2200 PF07650 KH domain ADFLV_2201 PF01078 Magnesium chelatase, subunit ChlI ADFLV_2201 PF13335 Magnesium chelatase, subunit ChlI C-terminal ADFLV_2203 PF01327 Polypeptide deformylase ADFLV_2204 PF00574 Clp protease ADFLV_2205 PF05697 Bacterial trigger factor protein (TF) ADFLV_2205 PF05698 Bacterial trigger factor protein (TF) C-terminus ADFLV_2205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ADFLV_2206 PF00092 von Willebrand factor type A domain ADFLV_2207 PF03976 Polyphosphate kinase 2 (PPK2) ADFLV_2208 PF03976 Polyphosphate kinase 2 (PPK2) ADFLV_2209 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ADFLV_2210 PF00301 Rubredoxin ADFLV_2211 PF03435 Saccharopine dehydrogenase NADP binding domain ADFLV_2211 PF16653 Saccharopine dehydrogenase C-terminal domain ADFLV_2213 PF02899 Phage integrase, N-terminal SAM-like domain ADFLV_2213 PF00589 Phage integrase family ADFLV_2228 PF06067 Domain of unknown function (DUF932) ADFLV_2249 PF16671 Actin cross-linking domain ADFLV_2249 PF04717 Type VI secretion system, phage-baseplate injector ADFLV_2256 PF10431 C-terminal, D2-small domain, of ClpB protein ADFLV_2256 PF17871 AAA lid domain ADFLV_2256 PF00004 ATPase family associated with various cellular activities (AAA) ADFLV_2256 PF07724 AAA domain (Cdc48 subfamily) ADFLV_2263 PF04225 Opacity-associated protein A LysM-like domain ADFLV_2263 PF01551 Peptidase family M23 ADFLV_2265 PF05638 Type VI secretion system effector, Hcp ADFLV_2266 PF16671 Actin cross-linking domain ADFLV_2266 PF04717 Type VI secretion system, phage-baseplate injector ADFLV_2271 PF08402 TOBE domain ADFLV_2271 PF00005 ABC transporter ADFLV_2272 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_2274 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_2275 PF13416 Bacterial extracellular solute-binding protein ADFLV_2279 PF01053 Cys/Met metabolism PLP-dependent enzyme ADFLV_2280 PF01053 Cys/Met metabolism PLP-dependent enzyme ADFLV_2281 PF00486 Transcriptional regulatory protein, C terminal ADFLV_2281 PF00072 Response regulator receiver domain ADFLV_2282 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2282 PF02203 Tar ligand binding domain homologue ADFLV_2282 PF00672 HAMP domain ADFLV_2283 PF03707 Bacterial signalling protein N terminal repeat ADFLV_2283 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2283 PF00563 EAL domain ADFLV_2284 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2284 PF18698 Histidine kinase sensor domain ADFLV_2284 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_2284 PF00672 HAMP domain ADFLV_2285 PF02203 Tar ligand binding domain homologue ADFLV_2285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2285 PF00672 HAMP domain ADFLV_2286 PF08447 PAS fold ADFLV_2286 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2288 PF03466 LysR substrate binding domain ADFLV_2288 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ADFLV_2291 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ADFLV_2293 PF00072 Response regulator receiver domain ADFLV_2293 PF00486 Transcriptional regulatory protein, C terminal ADFLV_2294 PF00583 Acetyltransferase (GNAT) family ADFLV_2295 PF03824 High-affinity nickel-transport protein ADFLV_2298 PF06965 Na+/H+ antiporter 1 ADFLV_2300 PF12833 Helix-turn-helix domain ADFLV_2300 PF02311 AraC-like ligand binding domain ADFLV_2301 PF01242 6-pyruvoyl tetrahydropterin synthase ADFLV_2304 PF00375 Sodium:dicarboxylate symporter family ADFLV_2305 PF00873 AcrB/AcrD/AcrF family ADFLV_2308 PF00440 Bacterial regulatory proteins, tetR family ADFLV_2309 PF00672 HAMP domain ADFLV_2309 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2309 PF02203 Tar ligand binding domain homologue ADFLV_2311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2311 PF08448 PAS fold ADFLV_2311 PF08447 PAS fold ADFLV_2312 PF03150 Di-haem cytochrome c peroxidase ADFLV_2313 PF04116 Fatty acid hydroxylase superfamily ADFLV_2318 PF00137 ATP synthase subunit C ADFLV_2320 PF00924 Mechanosensitive ion channel ADFLV_2325 PF00171 Aldehyde dehydrogenase family ADFLV_2328 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ADFLV_2328 PF13746 4Fe-4S dicluster domain ADFLV_2328 PF12801 4Fe-4S binding domain ADFLV_2329 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_2329 PF00989 PAS fold ADFLV_2329 PF08447 PAS fold ADFLV_2329 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2330 PF00072 Response regulator receiver domain ADFLV_2330 PF12833 Helix-turn-helix domain ADFLV_2332 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ADFLV_2332 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ADFLV_2332 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ADFLV_2332 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ADFLV_2333 PF00795 Carbon-nitrogen hydrolase ADFLV_2338 PF00258 Flavodoxin ADFLV_2339 PF01475 Ferric uptake regulator family ADFLV_2341 PF07670 Nucleoside recognition ADFLV_2341 PF02421 Ferrous iron transport protein B ADFLV_2341 PF07664 Ferrous iron transport protein B C terminus ADFLV_2344 PF04377 Arginine-tRNA-protein transferase, C terminus ADFLV_2344 PF04376 Arginine-tRNA-protein transferase, N terminus ADFLV_2345 PF00290 Tryptophan synthase alpha chain ADFLV_2346 PF00654 Voltage gated chloride channel ADFLV_2348 PF02548 Ketopantoate hydroxymethyltransferase ADFLV_2349 PF17864 RuvB AAA lid domain ADFLV_2349 PF05491 RuvB C-terminal winged helix domain ADFLV_2349 PF05496 Holliday junction DNA helicase RuvB P-loop domain ADFLV_2350 PF01594 AI-2E family transporter ADFLV_2352 PF09905 DNA-binding protein VF530 ADFLV_2363 PF04055 Radical SAM superfamily ADFLV_2364 PF01208 Uroporphyrinogen decarboxylase (URO-D) ADFLV_2366 PF02774 Semialdehyde dehydrogenase, dimerisation domain ADFLV_2366 PF01118 Semialdehyde dehydrogenase, NAD binding domain ADFLV_2367 PF00521 DNA gyrase/topoisomerase IV, subunit A ADFLV_2367 PF03989 DNA gyrase C-terminal domain, beta-propeller ADFLV_2369 PF01960 ArgJ family ADFLV_2371 PF00830 Ribosomal L28 family ADFLV_2374 PF01370 NAD dependent epimerase/dehydratase family ADFLV_2375 PF01467 Cytidylyltransferase-like ADFLV_2375 PF00294 pfkB family carbohydrate kinase ADFLV_2376 PF13580 SIS domain ADFLV_2377 PF04393 Protein of unknown function (DUF535) ADFLV_2379 PF16363 GDP-mannose 4,6 dehydratase ADFLV_2380 PF04321 RmlD substrate binding domain ADFLV_2382 PF03062 MBOAT, membrane-bound O-acyltransferase family ADFLV_2383 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ADFLV_2384 PF00483 Nucleotidyl transferase ADFLV_2389 PF13439 Glycosyltransferase Family 4 ADFLV_2389 PF00534 Glycosyl transferases group 1 ADFLV_2390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ADFLV_2390 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ADFLV_2390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ADFLV_2394 PF00037 4Fe-4S binding domain ADFLV_2396 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ADFLV_2396 PF07992 Pyridine nucleotide-disulphide oxidoreductase ADFLV_2397 PF00310 Glutamine amidotransferases class-II ADFLV_2397 PF04898 Glutamate synthase central domain ADFLV_2397 PF01645 Conserved region in glutamate synthase ADFLV_2397 PF01493 GXGXG motif ADFLV_2398 PF03480 Bacterial extracellular solute-binding protein, family 7 ADFLV_2399 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ADFLV_2400 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ADFLV_2402 PF08448 PAS fold ADFLV_2402 PF08447 PAS fold ADFLV_2402 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2403 PF00486 Transcriptional regulatory protein, C terminal ADFLV_2403 PF00072 Response regulator receiver domain ADFLV_2409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2409 PF08448 PAS fold ADFLV_2409 PF08447 PAS fold ADFLV_2417 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ADFLV_2418 PF01029 NusB family ADFLV_2419 PF00885 6,7-dimethyl-8-ribityllumazine synthase ADFLV_2420 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2421 PF00793 DAHP synthetase I family ADFLV_2426 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ADFLV_2430 PF16226 Domain of unknown function (DUF4885) ADFLV_2435 PF00437 Type II/IV secretion system protein ADFLV_2436 PF03958 Bacterial type II/III secretion system short domain ADFLV_2436 PF00263 Bacterial type II and III secretion system protein ADFLV_2442 PF00482 Type II secretion system (T2SS), protein F ADFLV_2444 PF07963 Prokaryotic N-terminal methylation motif ADFLV_2444 PF08334 Type II secretion system (T2SS), protein G ADFLV_2447 PF09186 Domain of unknown function (DUF1949) ADFLV_2447 PF01205 Uncharacterized protein family UPF0029 ADFLV_2448 PF01728 FtsJ-like methyltransferase ADFLV_2448 PF01479 S4 domain ADFLV_2449 PF06574 FAD synthetase ADFLV_2449 PF01687 Riboflavin kinase ADFLV_2450 PF13649 Methyltransferase domain ADFLV_2451 PF00578 AhpC/TSA family ADFLV_2453 PF02913 FAD linked oxidases, C-terminal domain ADFLV_2453 PF01565 FAD binding domain ADFLV_2454 PF03631 Virulence factor BrkB ADFLV_2455 PF00563 EAL domain ADFLV_2455 PF01590 GAF domain ADFLV_2455 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2455 PF00360 Phytochrome region ADFLV_2463 PF02861 Clp amino terminal domain, pathogenicity island component ADFLV_2463 PF17871 AAA lid domain ADFLV_2463 PF10431 C-terminal, D2-small domain, of ClpB protein ADFLV_2463 PF07724 AAA domain (Cdc48 subfamily) ADFLV_2463 PF00004 ATPase family associated with various cellular activities (AAA) ADFLV_2464 PF02617 ATP-dependent Clp protease adaptor protein ClpS ADFLV_2467 PF00501 AMP-binding enzyme ADFLV_2467 PF13193 AMP-binding enzyme C-terminal domain ADFLV_2468 PF01575 MaoC like domain ADFLV_2472 PF02203 Tar ligand binding domain homologue ADFLV_2472 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2472 PF00672 HAMP domain ADFLV_2473 PF01741 Large-conductance mechanosensitive channel, MscL ADFLV_2474 PF01613 Flavin reductase like domain ADFLV_2480 PF00771 FHIPEP family ADFLV_2481 PF00700 Bacterial flagellin C-terminal helical region ADFLV_2481 PF00669 Bacterial flagellin N-terminal helical region ADFLV_2482 PF18269 T3SS EscN ATPase C-terminal domain ADFLV_2482 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ADFLV_2484 PF01312 FlhB HrpN YscU SpaS Family ADFLV_2487 PF00460 Flagella basal body rod protein ADFLV_2487 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ADFLV_2488 PF02049 Flagellar hook-basal body complex protein FliE ADFLV_2490 PF10609 NUBPL iron-transfer P-loop NTPase ADFLV_2491 PF00448 SRP54-type protein, GTPase domain ADFLV_2496 PF01618 MotA/TolQ/ExbB proton channel family ADFLV_2497 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ADFLV_2497 PF16973 Flagellar motor switch protein FliN N-terminal ADFLV_2501 PF07559 Flagellar basal body protein FlaE ADFLV_2501 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ADFLV_2501 PF07196 Flagellin hook IN motif ADFLV_2501 PF00460 Flagella basal body rod protein ADFLV_2502 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ADFLV_2502 PF07196 Flagellin hook IN motif ADFLV_2502 PF07559 Flagellar basal body protein FlaE ADFLV_2502 PF00460 Flagella basal body rod protein ADFLV_2504 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ADFLV_2506 PF14841 FliG middle domain ADFLV_2506 PF14842 FliG N-terminal domain ADFLV_2506 PF01706 FliG C-terminal domain ADFLV_2507 PF08345 Flagellar M-ring protein C-terminal ADFLV_2507 PF01514 Secretory protein of YscJ/FliF family ADFLV_2508 PF00460 Flagella basal body rod protein ADFLV_2509 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ADFLV_2509 PF00460 Flagella basal body rod protein ADFLV_2511 PF00072 Response regulator receiver domain ADFLV_2512 PF00460 Flagella basal body rod protein ADFLV_2512 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ADFLV_2515 PF01782 RimM N-terminal domain ADFLV_2517 PF00886 Ribosomal protein S16 ADFLV_2518 PF02881 SRP54-type protein, helical bundle domain ADFLV_2518 PF02978 Signal peptide binding domain ADFLV_2518 PF00448 SRP54-type protein, GTPase domain ADFLV_2519 PF00849 RNA pseudouridylate synthase ADFLV_2520 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ADFLV_2522 PF01784 NIF3 (NGG1p interacting factor 3) ADFLV_2523 PF02091 Glycyl-tRNA synthetase alpha subunit ADFLV_2525 PF00731 AIR carboxylase ADFLV_2528 PF00672 HAMP domain ADFLV_2528 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2528 PF17200 Single Cache domain 2 ADFLV_2528 PF00672 HAMP domain ADFLV_2528 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2528 PF17200 Single Cache domain 2 ADFLV_2529 PF13476 AAA domain ADFLV_2530 PF01513 ATP-NAD kinase ADFLV_2531 PF03144 Elongation factor Tu domain 2 ADFLV_2531 PF00009 Elongation factor Tu GTP binding domain ADFLV_2531 PF03764 Elongation factor G, domain IV ADFLV_2531 PF14492 Elongation Factor G, domain II ADFLV_2531 PF00679 Elongation factor G C-terminus ADFLV_2532 PF00177 Ribosomal protein S7p/S5e ADFLV_2533 PF00164 Ribosomal protein S12/S23 ADFLV_2534 PF07690 Major Facilitator Superfamily ADFLV_2536 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2536 PF02203 Tar ligand binding domain homologue ADFLV_2536 PF00672 HAMP domain ADFLV_2538 PF00005 ABC transporter ADFLV_2541 PF13190 PDGLE domain ADFLV_2541 PF01891 Cobalt uptake substrate-specific transmembrane region ADFLV_2545 PF00800 Prephenate dehydratase ADFLV_2545 PF01842 ACT domain ADFLV_2545 PF01817 Chorismate mutase type II ADFLV_2548 PF00561 alpha/beta hydrolase fold ADFLV_2549 PF01361 Tautomerase enzyme ADFLV_2551 PF00682 HMGL-like ADFLV_2551 PF07836 DmpG-like communication domain ADFLV_2552 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation ADFLV_2552 PF01118 Semialdehyde dehydrogenase, NAD binding domain ADFLV_2554 PF00171 Aldehyde dehydrogenase family ADFLV_2555 PF03928 Haem-degrading ADFLV_2556 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ADFLV_2557 PF00175 Oxidoreductase NAD-binding domain ADFLV_2557 PF00970 Oxidoreductase FAD-binding domain ADFLV_2557 PF00111 2Fe-2S iron-sulfur cluster binding domain ADFLV_2558 PF00056 lactate/malate dehydrogenase, NAD binding domain ADFLV_2558 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ADFLV_2559 PF07568 Histidine kinase ADFLV_2559 PF12282 Signal transduction histidine kinase ADFLV_2559 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2560 PF00072 Response regulator receiver domain ADFLV_2563 PF01925 Sulfite exporter TauE/SafE ADFLV_2564 PF00970 Oxidoreductase FAD-binding domain ADFLV_2564 PF00111 2Fe-2S iron-sulfur cluster binding domain ADFLV_2564 PF00175 Oxidoreductase NAD-binding domain ADFLV_2566 PF04945 YHS domain ADFLV_2566 PF02332 Methane/Phenol/Toluene Hydroxylase ADFLV_2567 PF02406 MmoB/DmpM family ADFLV_2568 PF02332 Methane/Phenol/Toluene Hydroxylase ADFLV_2570 PF12282 Signal transduction histidine kinase ADFLV_2570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2570 PF07568 Histidine kinase ADFLV_2571 PF00072 Response regulator receiver domain ADFLV_2571 PF00486 Transcriptional regulatory protein, C terminal ADFLV_2572 PF00672 HAMP domain ADFLV_2572 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2572 PF02203 Tar ligand binding domain homologue ADFLV_2573 PF00106 short chain dehydrogenase ADFLV_2574 PF00180 Isocitrate/isopropylmalate dehydrogenase ADFLV_2577 PF04997 RNA polymerase Rpb1, domain 1 ADFLV_2577 PF00623 RNA polymerase Rpb1, domain 2 ADFLV_2577 PF05000 RNA polymerase Rpb1, domain 4 ADFLV_2577 PF04983 RNA polymerase Rpb1, domain 3 ADFLV_2577 PF04998 RNA polymerase Rpb1, domain 5 ADFLV_2578 PF04561 RNA polymerase Rpb2, domain 2 ADFLV_2578 PF10385 RNA polymerase beta subunit external 1 domain ADFLV_2578 PF04565 RNA polymerase Rpb2, domain 3 ADFLV_2578 PF00562 RNA polymerase Rpb2, domain 6 ADFLV_2578 PF04563 RNA polymerase beta subunit ADFLV_2578 PF04560 RNA polymerase Rpb2, domain 7 ADFLV_2579 PF00542 Ribosomal protein L7/L12 C-terminal domain ADFLV_2579 PF16320 Ribosomal protein L7/L12 dimerisation domain ADFLV_2580 PF00466 Ribosomal protein L10 ADFLV_2581 PF00687 Ribosomal protein L1p/L10e family ADFLV_2582 PF03946 Ribosomal protein L11, N-terminal domain ADFLV_2582 PF00298 Ribosomal protein L11, RNA binding domain ADFLV_2583 PF02357 Transcription termination factor nusG ADFLV_2586 PF00471 Ribosomal protein L33 ADFLV_2587 PF03144 Elongation factor Tu domain 2 ADFLV_2587 PF03143 Elongation factor Tu C-terminal domain ADFLV_2587 PF00009 Elongation factor Tu GTP binding domain ADFLV_2592 PF08245 Mur ligase middle domain ADFLV_2593 PF00953 Glycosyl transferase family 4 ADFLV_2593 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ADFLV_2594 PF01676 Metalloenzyme superfamily ADFLV_2594 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ADFLV_2595 PF00005 ABC transporter ADFLV_2595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ADFLV_2596 PF00912 Transglycosylase ADFLV_2596 PF00905 Penicillin binding protein transpeptidase domain ADFLV_2597 PF03951 Glutamine synthetase, beta-Grasp domain ADFLV_2597 PF00120 Glutamine synthetase, catalytic domain ADFLV_2599 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2599 PF00072 Response regulator receiver domain ADFLV_2600 PF02391 MoaE protein ADFLV_2602 PF02621 Menaquinone biosynthesis ADFLV_2603 PF02673 Bacitracin resistance protein BacA ADFLV_2604 PF04101 Glycosyltransferase family 28 C-terminal domain ADFLV_2604 PF03033 Glycosyltransferase family 28 N-terminal domain ADFLV_2605 PF01098 Cell cycle protein ADFLV_2607 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ADFLV_2615 PF00117 Glutamine amidotransferase class-I ADFLV_2616 PF13416 Bacterial extracellular solute-binding protein ADFLV_2617 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_2618 PF00005 ABC transporter ADFLV_2619 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2619 PF03707 Bacterial signalling protein N terminal repeat ADFLV_2619 PF00563 EAL domain ADFLV_2620 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ADFLV_2620 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ADFLV_2626 PF09371 Tex-like protein N-terminal domain ADFLV_2626 PF00575 S1 RNA binding domain ADFLV_2626 PF17674 HHH domain ADFLV_2626 PF16921 Tex protein YqgF-like domain ADFLV_2629 PF01042 Endoribonuclease L-PSP ADFLV_2630 PF00293 NUDIX domain ADFLV_2630 PF13344 Haloacid dehalogenase-like hydrolase ADFLV_2632 PF01914 MarC family integral membrane protein ADFLV_2633 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_2634 PF00497 Bacterial extracellular solute-binding proteins, family 3 ADFLV_2635 PF00005 ABC transporter ADFLV_2638 PF00155 Aminotransferase class I and II ADFLV_2642 PF01245 Ribosomal protein L19 ADFLV_2643 PF01746 tRNA (Guanine-1)-methyltransferase ADFLV_2645 PF01717 Cobalamin-independent synthase, Catalytic domain ADFLV_2645 PF08267 Cobalamin-independent synthase, N-terminal domain ADFLV_2646 PF00291 Pyridoxal-phosphate dependent enzyme ADFLV_2646 PF13291 ACT domain ADFLV_2647 PF00119 ATP synthase A chain ADFLV_2649 PF00580 UvrD/REP helicase N-terminal domain ADFLV_2649 PF13361 UvrD-like helicase C-terminal domain ADFLV_2650 PF00696 Amino acid kinase family ADFLV_2651 PF00291 Pyridoxal-phosphate dependent enzyme ADFLV_2652 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ADFLV_2652 PF00355 Rieske [2Fe-2S] domain ADFLV_2653 PF00032 Cytochrome b(C-terminal)/b6/petD ADFLV_2653 PF00033 Cytochrome b/b6/petB ADFLV_2656 PF04452 RNA methyltransferase ADFLV_2658 PF00994 Probable molybdopterin binding domain ADFLV_2658 PF03453 MoeA N-terminal region (domain I and II) ADFLV_2658 PF03454 MoeA C-terminal region (domain IV) ADFLV_2659 PF06508 Queuosine biosynthesis protein QueC ADFLV_2663 PF00550 Phosphopantetheine attachment site ADFLV_2664 PF02801 Beta-ketoacyl synthase, C-terminal domain ADFLV_2664 PF00109 Beta-ketoacyl synthase, N-terminal domain ADFLV_2665 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ADFLV_2666 PF01230 HIT domain ADFLV_2667 PF01409 tRNA synthetases class II core domain (F) ADFLV_2667 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ADFLV_2668 PF01588 Putative tRNA binding domain ADFLV_2668 PF03147 Ferredoxin-fold anticodon binding domain ADFLV_2668 PF03484 tRNA synthetase B5 domain ADFLV_2668 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ADFLV_2669 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ADFLV_2670 PF02401 LytB protein ADFLV_2671 PF00575 S1 RNA binding domain ADFLV_2672 PF01842 ACT domain ADFLV_2672 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADFLV_2672 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ADFLV_2673 PF01132 Elongation factor P (EF-P) OB domain ADFLV_2673 PF08207 Elongation factor P (EF-P) KOW-like domain ADFLV_2673 PF09285 Elongation factor P, C-terminal ADFLV_2674 PF01872 RibD C-terminal domain ADFLV_2674 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ADFLV_2675 PF02576 RimP N-terminal domain ADFLV_2676 PF02033 Ribosome-binding factor A ADFLV_2677 PF04760 Translation initiation factor IF-2, N-terminal region ADFLV_2677 PF00009 Elongation factor Tu GTP binding domain ADFLV_2677 PF11987 Translation-initiation factor 2 ADFLV_2679 PF00288 GHMP kinases N terminal domain ADFLV_2679 PF08544 GHMP kinases C terminal ADFLV_2681 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ADFLV_2682 PF01476 LysM domain ADFLV_2682 PF01551 Peptidase family M23 ADFLV_2684 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ADFLV_2684 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ADFLV_2685 PF02445 Quinolinate synthetase A protein ADFLV_2686 PF02660 Glycerol-3-phosphate acyltransferase ADFLV_2688 PF05538 Campylobacter major outer membrane protein ADFLV_2690 PF00472 RF-1 domain ADFLV_2690 PF03462 PCRF domain ADFLV_2691 PF13533 Biotin-lipoyl like ADFLV_2692 PF07869 Protein of unknown function (DUF1656) ADFLV_2693 PF04632 Fusaric acid resistance protein family ADFLV_2694 PF02321 Outer membrane efflux protein ADFLV_2695 PF01047 MarR family ADFLV_2700 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ADFLV_2700 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ADFLV_2703 PF00115 Cytochrome C and Quinol oxidase polypeptide I ADFLV_2704 PF01668 SmpB protein ADFLV_2705 PF00288 GHMP kinases N terminal domain ADFLV_2706 PF01509 TruB family pseudouridylate synthase (N terminal domain) ADFLV_2707 PF13361 UvrD-like helicase C-terminal domain ADFLV_2707 PF00580 UvrD/REP helicase N-terminal domain ADFLV_2708 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ADFLV_2708 PF03466 LysR substrate binding domain ADFLV_2709 PF16199 Radical_SAM C-terminal domain ADFLV_2709 PF04055 Radical SAM superfamily ADFLV_2710 PF00156 Phosphoribosyl transferase domain ADFLV_2710 PF13537 Glutamine amidotransferase domain ADFLV_2711 PF05173 Dihydrodipicolinate reductase, C-terminus ADFLV_2711 PF01113 Dihydrodipicolinate reductase, N-terminus ADFLV_2712 PF07992 Pyridine nucleotide-disulphide oxidoreductase ADFLV_2713 PF00085 Thioredoxin ADFLV_2714 PF02272 DHHA1 domain ADFLV_2714 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ADFLV_2714 PF01411 tRNA synthetases class II (A) ADFLV_2719 PF00877 NlpC/P60 family ADFLV_2720 PF00877 NlpC/P60 family ADFLV_2723 PF00892 EamA-like transporter family ADFLV_2725 PF02545 Maf-like protein ADFLV_2726 PF00034 Cytochrome c ADFLV_2726 PF03150 Di-haem cytochrome c peroxidase ADFLV_2727 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ADFLV_2727 PF02779 Transketolase, pyrimidine binding domain ADFLV_2727 PF02780 Transketolase, C-terminal domain ADFLV_2728 PF00155 Aminotransferase class I and II ADFLV_2729 PF01842 ACT domain ADFLV_2729 PF01817 Chorismate mutase type II ADFLV_2729 PF00800 Prephenate dehydratase ADFLV_2730 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ADFLV_2730 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ADFLV_2732 PF00121 Triosephosphate isomerase ADFLV_2733 PF00162 Phosphoglycerate kinase ADFLV_2734 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ADFLV_2734 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ADFLV_2735 PF01467 Cytidylyltransferase-like ADFLV_2737 PF00750 tRNA synthetases class I (R) ADFLV_2737 PF03485 Arginyl tRNA synthetase N terminal domain ADFLV_2737 PF05746 DALR anticodon binding domain ADFLV_2738 PF02416 mttA/Hcf106 family ADFLV_2739 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ADFLV_2740 PF01553 Acyltransferase ADFLV_2743 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ADFLV_2744 PF01259 SAICAR synthetase ADFLV_2745 PF03572 Peptidase family S41 ADFLV_2745 PF13180 PDZ domain ADFLV_2748 PF01142 tRNA pseudouridine synthase D (TruD) ADFLV_2749 PF01258 Prokaryotic dksA/traR C4-type zinc finger ADFLV_2754 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_2754 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2754 PF00989 PAS fold ADFLV_2754 PF08447 PAS fold ADFLV_2755 PF00563 EAL domain ADFLV_2764 PF02899 Phage integrase, N-terminal SAM-like domain ADFLV_2764 PF00589 Phage integrase family ADFLV_2767 PF00920 Dehydratase family ADFLV_2768 PF17820 PDZ domain ADFLV_2768 PF13180 PDZ domain ADFLV_2769 PF00486 Transcriptional regulatory protein, C terminal ADFLV_2769 PF00072 Response regulator receiver domain ADFLV_2772 PF03186 CobD/Cbib protein ADFLV_2773 PF13460 NAD(P)H-binding ADFLV_2773 PF11066 Protein of unknown function (DUF2867) ADFLV_2774 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ADFLV_2774 PF07685 CobB/CobQ-like glutamine amidotransferase domain ADFLV_2778 PF00155 Aminotransferase class I and II ADFLV_2779 PF02654 Cobalamin-5-phosphate synthase ADFLV_2781 PF01914 MarC family integral membrane protein ADFLV_2782 PF13472 GDSL-like Lipase/Acylhydrolase family ADFLV_2782 PF02348 Cytidylyltransferase ADFLV_2784 PF00939 Sodium:sulfate symporter transmembrane region ADFLV_2786 PF02683 Cytochrome C biogenesis protein transmembrane region ADFLV_2786 PF11412 Disulphide bond corrector protein DsbC ADFLV_2787 PF00085 Thioredoxin ADFLV_2789 PF18030 RimK PreATP-grasp domain ADFLV_2789 PF08443 RimK-like ATP-grasp domain ADFLV_2792 PF08495 FIST N domain ADFLV_2792 PF00563 EAL domain ADFLV_2792 PF10442 FIST C domain ADFLV_2792 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2793 PF02666 Phosphatidylserine decarboxylase ADFLV_2795 PF03562 MltA specific insert domain ADFLV_2795 PF06725 3D domain ADFLV_2797 PF00012 Hsp70 protein ADFLV_2798 PF01025 GrpE ADFLV_2800 PF16868 NMT1-like family ADFLV_2802 PF00072 Response regulator receiver domain ADFLV_2802 PF00196 Bacterial regulatory proteins, luxR family ADFLV_2803 PF08448 PAS fold ADFLV_2803 PF08447 PAS fold ADFLV_2803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2804 PF01416 tRNA pseudouridine synthase ADFLV_2806 PF06750 Bacterial Peptidase A24 N-terminal domain ADFLV_2806 PF01478 Type IV leader peptidase family ADFLV_2807 PF01255 Putative undecaprenyl diphosphate synthase ADFLV_2808 PF02441 Flavoprotein ADFLV_2808 PF04127 DNA / pantothenate metabolism flavoprotein ADFLV_2809 PF12804 MobA-like NTP transferase domain ADFLV_2809 PF14602 Hexapeptide repeat of succinyl-transferase ADFLV_2811 PF08148 DSHCT (NUC185) domain ADFLV_2811 PF00271 Helicase conserved C-terminal domain ADFLV_2811 PF00270 DEAD/DEAH box helicase ADFLV_2812 PF05958 tRNA (Uracil-5-)-methyltransferase ADFLV_2814 PF00700 Bacterial flagellin C-terminal helical region ADFLV_2814 PF00669 Bacterial flagellin N-terminal helical region ADFLV_2816 PF04101 Glycosyltransferase family 28 C-terminal domain ADFLV_2817 PF08666 SAF domain ADFLV_2817 PF03102 NeuB family ADFLV_2818 PF00753 Metallo-beta-lactamase superfamily ADFLV_2821 PF13193 AMP-binding enzyme C-terminal domain ADFLV_2821 PF00501 AMP-binding enzyme ADFLV_2823 PF00501 AMP-binding enzyme ADFLV_2823 PF00668 Condensation domain ADFLV_2823 PF07993 Male sterility protein ADFLV_2823 PF13193 AMP-binding enzyme C-terminal domain ADFLV_2823 PF00550 Phosphopantetheine attachment site ADFLV_2831 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ADFLV_2831 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ADFLV_2833 PF02348 Cytidylyltransferase ADFLV_2834 PF17191 RecG wedge domain ADFLV_2834 PF13749 Putative ATP-dependent DNA helicase recG C-terminal ADFLV_2834 PF00270 DEAD/DEAH box helicase ADFLV_2835 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ADFLV_2836 PF02719 Polysaccharide biosynthesis protein ADFLV_2838 PF00154 recA bacterial DNA recombination protein ADFLV_2839 PF03952 Enolase, N-terminal domain ADFLV_2839 PF00113 Enolase, C-terminal TIM barrel domain ADFLV_2842 PF02254 TrkA-N domain ADFLV_2842 PF00999 Sodium/hydrogen exchanger family ADFLV_2842 PF02080 TrkA-C domain ADFLV_2843 PF04055 Radical SAM superfamily ADFLV_2843 PF06968 Biotin and Thiamin Synthesis associated domain ADFLV_2845 PF01751 Toprim domain ADFLV_2845 PF01131 DNA topoisomerase ADFLV_2845 PF13368 Topoisomerase C-terminal repeat ADFLV_2846 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ADFLV_2847 PF02621 Menaquinone biosynthesis ADFLV_2849 PF00361 Proton-conducting membrane transporter ADFLV_2850 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ADFLV_2850 PF00361 Proton-conducting membrane transporter ADFLV_2851 PF00361 Proton-conducting membrane transporter ADFLV_2851 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ADFLV_2852 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ADFLV_2853 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ADFLV_2854 PF12838 4Fe-4S dicluster domain ADFLV_2855 PF00146 NADH dehydrogenase ADFLV_2856 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ADFLV_2856 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ADFLV_2856 PF00384 Molybdopterin oxidoreductase ADFLV_2859 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ADFLV_2860 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ADFLV_2861 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ADFLV_2862 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ADFLV_2863 PF16450 Proteasomal ATPase OB C-terminal domain ADFLV_2863 PF00004 ATPase family associated with various cellular activities (AAA) ADFLV_2863 PF17758 Proteasomal ATPase OB N-terminal domain ADFLV_2869 PF00916 Sulfate permease family ADFLV_2869 PF01740 STAS domain ADFLV_2871 PF01261 Xylose isomerase-like TIM barrel ADFLV_2872 PF07992 Pyridine nucleotide-disulphide oxidoreductase ADFLV_2873 PF00209 Sodium:neurotransmitter symporter family ADFLV_2875 PF02677 Epoxyqueuosine reductase QueH ADFLV_2876 PF02684 Lipid-A-disaccharide synthetase ADFLV_2877 PF07977 FabA-like domain ADFLV_2878 PF00132 Bacterial transferase hexapeptide (six repeats) ADFLV_2878 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ADFLV_2879 PF10431 C-terminal, D2-small domain, of ClpB protein ADFLV_2879 PF06689 ClpX C4-type zinc finger ADFLV_2879 PF07724 AAA domain (Cdc48 subfamily) ADFLV_2882 PF00677 Lumazine binding domain ADFLV_2883 PF01134 Glucose inhibited division protein A ADFLV_2883 PF13932 GidA associated domain ADFLV_2886 PF13746 4Fe-4S dicluster domain ADFLV_2886 PF12801 4Fe-4S binding domain ADFLV_2886 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ADFLV_2887 PF06418 CTP synthase N-terminus ADFLV_2887 PF00117 Glutamine amidotransferase class-I ADFLV_2888 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ADFLV_2888 PF17768 RecJ OB domain ADFLV_2888 PF02272 DHHA1 domain ADFLV_2888 PF01368 DHH family ADFLV_2891 PF01965 DJ-1/PfpI family ADFLV_2894 PF02811 PHP domain ADFLV_2894 PF14579 Helix-hairpin-helix motif ADFLV_2894 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ADFLV_2894 PF07733 Bacterial DNA polymerase III alpha NTPase domain ADFLV_2895 PF01975 Survival protein SurE ADFLV_2898 PF01967 MoaC family ADFLV_2899 PF01165 Ribosomal protein S21 ADFLV_2905 PF01027 Inhibitor of apoptosis-promoting Bax1 ADFLV_2906 PF17792 ThiD2 family ADFLV_2906 PF02581 Thiamine monophosphate synthase ADFLV_2908 PF03840 Preprotein translocase SecG subunit ADFLV_2910 PF01765 Ribosome recycling factor ADFLV_2911 PF00156 Phosphoribosyl transferase domain ADFLV_2913 PF12832 MFS_1 like family ADFLV_2914 PF00924 Mechanosensitive ion channel ADFLV_2914 PF12794 Mechanosensitive ion channel inner membrane domain 1 ADFLV_2914 PF12795 Mechanosensitive ion channel porin domain ADFLV_2915 PF01544 CorA-like Mg2+ transporter protein ADFLV_2916 PF03883 Peroxide stress protein YaaA ADFLV_2917 PF02810 SEC-C motif ADFLV_2921 PF13545 Crp-like helix-turn-helix domain ADFLV_2921 PF00027 Cyclic nucleotide-binding domain ADFLV_2923 PF03167 Uracil DNA glycosylase superfamily ADFLV_2924 PF00171 Aldehyde dehydrogenase family ADFLV_2925 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ADFLV_2925 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ADFLV_2925 PF00205 Thiamine pyrophosphate enzyme, central domain ADFLV_2926 PF04011 LemA family ADFLV_2929 PF13419 Haloacid dehalogenase-like hydrolase ADFLV_2933 PF07690 Major Facilitator Superfamily ADFLV_2935 PF08447 PAS fold ADFLV_2935 PF00989 PAS fold ADFLV_2935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2935 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_2939 PF01627 Hpt domain ADFLV_2939 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ADFLV_2939 PF00512 His Kinase A (phospho-acceptor) domain ADFLV_2939 PF00672 HAMP domain ADFLV_2939 PF00072 Response regulator receiver domain ADFLV_2939 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ADFLV_2940 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2940 PF17158 Membrane-associated sensor, integral membrane domain ADFLV_2942 PF02203 Tar ligand binding domain homologue ADFLV_2942 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2942 PF00672 HAMP domain ADFLV_2943 PF11849 Domain of unknown function (DUF3369) ADFLV_2946 PF00072 Response regulator receiver domain ADFLV_2946 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2947 PF00529 HlyD membrane-fusion protein of T1SS ADFLV_2947 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ADFLV_2948 PF00873 AcrB/AcrD/AcrF family ADFLV_2949 PF02321 Outer membrane efflux protein ADFLV_2953 PF00145 C-5 cytosine-specific DNA methylase ADFLV_2953 PF13411 MerR HTH family regulatory protein ADFLV_2957 PF00149 Calcineurin-like phosphoesterase ADFLV_2959 PF01053 Cys/Met metabolism PLP-dependent enzyme ADFLV_2960 PF02082 Transcriptional regulator ADFLV_2961 PF00291 Pyridoxal-phosphate dependent enzyme ADFLV_2963 PF01507 Phosphoadenosine phosphosulfate reductase family ADFLV_2964 PF01507 Phosphoadenosine phosphosulfate reductase family ADFLV_2965 PF00009 Elongation factor Tu GTP binding domain ADFLV_2966 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ADFLV_2966 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ADFLV_2967 PF02347 Glycine cleavage system P-protein ADFLV_2968 PF00149 Calcineurin-like phosphoesterase ADFLV_2969 PF00011 Hsp20/alpha crystallin family ADFLV_2971 PF14403 Circularly permuted ATP-grasp type 2 ADFLV_2971 PF04168 A predicted alpha-helical domain with a conserved ER motif. ADFLV_2972 PF08379 Bacterial transglutaminase-like N-terminal region ADFLV_2972 PF01841 Transglutaminase-like superfamily ADFLV_2973 PF02203 Tar ligand binding domain homologue ADFLV_2973 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ADFLV_2973 PF00672 HAMP domain ADFLV_2974 PF00005 ABC transporter ADFLV_2974 PF17850 CysA C-terminal regulatory domain ADFLV_2974 PF12857 TOBE-like domain ADFLV_2975 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_2976 PF00528 Binding-protein-dependent transport system inner membrane component ADFLV_2977 PF08495 FIST N domain ADFLV_2977 PF00990 Diguanylate cyclase, GGDEF domain ADFLV_2977 PF10442 FIST C domain ADFLV_2977 PF00563 EAL domain ADFLV_2979 PF02082 Transcriptional regulator ADFLV_2983 PF14403 Circularly permuted ATP-grasp type 2 ADFLV_2985 PF08019 Phosphoethanolamine transferase EptA/EptB ADFLV_2985 PF00884 Sulfatase ADFLV_2987 PF01219 Prokaryotic diacylglycerol kinase ADFLV_2988 PF09086 Domain of unknown function (DUF1924) ADFLV_2993 PF00486 Transcriptional regulatory protein, C terminal ADFLV_2993 PF00072 Response regulator receiver domain ADFLV_2995 PF08241 Methyltransferase domain ADFLV_2997 PF11849 Domain of unknown function (DUF3369) ADFLV_2998 PF02511 Thymidylate synthase complementing protein ADFLV_2999 PF04960 Glutaminase ADFLV_3000 PF03458 UPF0126 domain ADFLV_3002 PF02911 Formyl transferase, C-terminal domain ADFLV_3002 PF00551 Formyl transferase ADFLV_3003 PF02075 Crossover junction endodeoxyribonuclease RuvC ADFLV_3004 PF00825 Ribonuclease P ADFLV_3005 PF00444 Ribosomal protein L36