locus-tag class description ALEK_0001 PF00308 Bacterial dnaA protein ALEK_0001 PF08299 Bacterial dnaA protein helix-turn-helix ALEK_0001 PF11638 DnaA N-terminal domain ALEK_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ALEK_0002 PF02767 DNA polymerase III beta subunit, central domain ALEK_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ALEK_0003 PF01751 Toprim domain ALEK_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ALEK_0003 PF00204 DNA gyrase B ALEK_0006 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALEK_0007 PF14489 QueF-like protein ALEK_0011 PF08447 PAS fold ALEK_0011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0011 PF08448 PAS fold ALEK_0012 PF00849 RNA pseudouridylate synthase ALEK_0013 PF10397 Adenylosuccinate lyase C-terminus ALEK_0013 PF00206 Lyase ALEK_0014 PF02867 Ribonucleotide reductase, barrel domain ALEK_0014 PF00317 Ribonucleotide reductase, all-alpha domain ALEK_0014 PF03477 ATP cone domain ALEK_0015 PF00268 Ribonucleotide reductase, small chain ALEK_0019 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALEK_0020 PF01810 LysE type translocator ALEK_0021 PF12833 Helix-turn-helix domain ALEK_0026 PF12706 Beta-lactamase superfamily domain ALEK_0027 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALEK_0027 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ALEK_0028 PF00691 OmpA family ALEK_0032 PF01451 Low molecular weight phosphotyrosine protein phosphatase ALEK_0034 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALEK_0034 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALEK_0034 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALEK_0034 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALEK_0035 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALEK_0035 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALEK_0037 PF12833 Helix-turn-helix domain ALEK_0038 PF12833 Helix-turn-helix domain ALEK_0038 PF00072 Response regulator receiver domain ALEK_0039 PF00989 PAS fold ALEK_0039 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0039 PF08447 PAS fold ALEK_0039 PF00512 His Kinase A (phospho-acceptor) domain ALEK_0040 PF00072 Response regulator receiver domain ALEK_0040 PF00990 Diguanylate cyclase, GGDEF domain ALEK_0041 PF13746 4Fe-4S dicluster domain ALEK_0041 PF12801 4Fe-4S binding domain ALEK_0041 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALEK_0042 PF01810 LysE type translocator ALEK_0046 PF00171 Aldehyde dehydrogenase family ALEK_0047 PF08240 Alcohol dehydrogenase GroES-like domain ALEK_0047 PF00107 Zinc-binding dehydrogenase ALEK_0048 PF01638 HxlR-like helix-turn-helix ALEK_0049 PF03649 Uncharacterised protein family (UPF0014) ALEK_0053 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ALEK_0053 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ALEK_0054 PF02934 GatB/GatE catalytic domain ALEK_0054 PF02637 GatB domain ALEK_0055 PF09312 SurA N-terminal domain ALEK_0055 PF00639 PPIC-type PPIASE domain ALEK_0056 PF02754 Cysteine-rich domain ALEK_0057 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALEK_0059 PF03480 Bacterial extracellular solute-binding protein, family 7 ALEK_0060 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALEK_0061 PF01575 MaoC like domain ALEK_0063 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALEK_0063 PF02770 Acyl-CoA dehydrogenase, middle domain ALEK_0063 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALEK_0064 PF13183 4Fe-4S dicluster domain ALEK_0064 PF02754 Cysteine-rich domain ALEK_0064 PF02665 Nitrate reductase gamma subunit ALEK_0065 PF01012 Electron transfer flavoprotein domain ALEK_0066 PF00766 Electron transfer flavoprotein FAD-binding domain ALEK_0066 PF01012 Electron transfer flavoprotein domain ALEK_0067 PF05724 Thiopurine S-methyltransferase (TPMT) ALEK_0068 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALEK_0068 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALEK_0069 PF03061 Thioesterase superfamily ALEK_0070 PF03061 Thioesterase superfamily ALEK_0071 PF01144 Coenzyme A transferase ALEK_0072 PF01144 Coenzyme A transferase ALEK_0073 PF00108 Thiolase, N-terminal domain ALEK_0073 PF02803 Thiolase, C-terminal domain ALEK_0074 PF00989 PAS fold ALEK_0074 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0074 PF00512 His Kinase A (phospho-acceptor) domain ALEK_0074 PF13426 PAS domain ALEK_0074 PF13188 PAS domain ALEK_0075 PF00486 Transcriptional regulatory protein, C terminal ALEK_0075 PF00072 Response regulator receiver domain ALEK_0076 PF00486 Transcriptional regulatory protein, C terminal ALEK_0076 PF00072 Response regulator receiver domain ALEK_0077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0077 PF08447 PAS fold ALEK_0077 PF00512 His Kinase A (phospho-acceptor) domain ALEK_0077 PF00989 PAS fold ALEK_0078 PF02589 LUD domain ALEK_0079 PF11870 Domain of unknown function (DUF3390) ALEK_0079 PF13183 4Fe-4S dicluster domain ALEK_0079 PF02589 LUD domain ALEK_0080 PF02754 Cysteine-rich domain ALEK_0082 PF01872 RibD C-terminal domain ALEK_0082 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALEK_0083 PF00364 Biotin-requiring enzyme ALEK_0084 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALEK_0084 PF00289 Biotin carboxylase, N-terminal domain ALEK_0084 PF02785 Biotin carboxylase C-terminal domain ALEK_0085 PF00271 Helicase conserved C-terminal domain ALEK_0085 PF00270 DEAD/DEAH box helicase ALEK_0087 PF01384 Phosphate transporter family ALEK_0088 PF00072 Response regulator receiver domain ALEK_0088 PF00486 Transcriptional regulatory protein, C terminal ALEK_0090 PF00733 Asparagine synthase ALEK_0090 PF13537 Glutamine amidotransferase domain ALEK_0092 PF00881 Nitroreductase family ALEK_0093 PF03480 Bacterial extracellular solute-binding protein, family 7 ALEK_0094 PF13085 2Fe-2S iron-sulfur cluster binding domain ALEK_0095 PF02910 Fumarate reductase flavoprotein C-term ALEK_0095 PF00890 FAD binding domain ALEK_0097 PF13638 PIN domain ALEK_0097 PF02562 PhoH-like protein ALEK_0099 PF16193 AAA C-terminal domain ALEK_0099 PF05496 Holliday junction DNA helicase RuvB P-loop domain ALEK_0099 PF01661 Macro domain ALEK_0099 PF12002 MgsA AAA+ ATPase C terminal ALEK_0100 PF00849 RNA pseudouridylate synthase ALEK_0100 PF01479 S4 domain ALEK_0101 PF01380 SIS domain ALEK_0101 PF00571 CBS domain ALEK_0102 PF00753 Metallo-beta-lactamase superfamily ALEK_0102 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ALEK_0102 PF17770 Ribonuclease J C-terminal domain ALEK_0103 PF00398 Ribosomal RNA adenine dimethylase ALEK_0104 PF00977 Histidine biosynthesis protein ALEK_0107 PF04055 Radical SAM superfamily ALEK_0108 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALEK_0109 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ALEK_0110 PF02203 Tar ligand binding domain homologue ALEK_0110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_0110 PF00672 HAMP domain ALEK_0111 PF00072 Response regulator receiver domain ALEK_0111 PF00486 Transcriptional regulatory protein, C terminal ALEK_0112 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0116 PF00873 AcrB/AcrD/AcrF family ALEK_0118 PF05114 Protein of unknown function (DUF692) ALEK_0120 PF01554 MatE ALEK_0121 PF00742 Homoserine dehydrogenase ALEK_0121 PF03447 Homoserine dehydrogenase, NAD binding domain ALEK_0121 PF01842 ACT domain ALEK_0122 PF00155 Aminotransferase class I and II ALEK_0124 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALEK_0124 PF00588 SpoU rRNA Methylase family ALEK_0125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALEK_0126 PF01197 Ribosomal protein L31 ALEK_0130 PF17156 Gammaproteobacterial periplasmic sensor domain ALEK_0130 PF00990 Diguanylate cyclase, GGDEF domain ALEK_0133 PF02203 Tar ligand binding domain homologue ALEK_0133 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_0133 PF00672 HAMP domain ALEK_0134 PF00990 Diguanylate cyclase, GGDEF domain ALEK_0134 PF17158 Membrane-associated sensor, integral membrane domain ALEK_0135 PF02222 ATP-grasp domain ALEK_0137 PF01678 Diaminopimelate epimerase ALEK_0138 PF01121 Dephospho-CoA kinase ALEK_0139 PF17284 Spermidine synthase tetramerisation domain ALEK_0140 PF00586 AIR synthase related protein, N-terminal domain ALEK_0140 PF02769 AIR synthase related protein, C-terminal domain ALEK_0141 PF02203 Tar ligand binding domain homologue ALEK_0141 PF00672 HAMP domain ALEK_0141 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_0142 PF07690 Major Facilitator Superfamily ALEK_0143 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALEK_0143 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALEK_0144 PF17954 Quercetinase C-terminal cupin domain ALEK_0144 PF02678 Pirin ALEK_0146 PF03358 NADPH-dependent FMN reductase ALEK_0147 PF04264 YceI-like domain ALEK_0149 PF01810 LysE type translocator ALEK_0150 PF00266 Aminotransferase class-V ALEK_0151 PF13393 Histidyl-tRNA synthetase ALEK_0152 PF00709 Adenylosuccinate synthetase ALEK_0154 PF00117 Glutamine amidotransferase class-I ALEK_0154 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ALEK_0156 PF01638 HxlR-like helix-turn-helix ALEK_0159 PF02542 YgbB family ALEK_0159 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ALEK_0161 PF01964 Radical SAM ThiC family ALEK_0163 PF04205 FMN-binding domain ALEK_0163 PF12801 4Fe-4S binding domain ALEK_0164 PF01883 Iron-sulfur cluster assembly protein ALEK_0164 PF10609 NUBPL iron-transfer P-loop NTPase ALEK_0165 PF02525 Flavodoxin-like fold ALEK_0168 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ALEK_0168 PF01502 Phosphoribosyl-AMP cyclohydrolase ALEK_0171 PF01063 Amino-transferase class IV ALEK_0174 PF04237 YjbR ALEK_0175 PF00950 ABC 3 transport family ALEK_0176 PF00005 ABC transporter ALEK_0178 PF02574 Homocysteine S-methyltransferase ALEK_0178 PF02310 B12 binding domain ALEK_0178 PF02607 B12 binding domain ALEK_0178 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALEK_0178 PF00809 Pterin binding enzyme ALEK_0183 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALEK_0184 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0184 PF08448 PAS fold ALEK_0184 PF08447 PAS fold ALEK_0185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0185 PF08448 PAS fold ALEK_0185 PF08447 PAS fold ALEK_0186 PF05538 Campylobacter major outer membrane protein ALEK_0187 PF00465 Iron-containing alcohol dehydrogenase ALEK_0188 PF06719 AraC-type transcriptional regulator N-terminus ALEK_0188 PF12833 Helix-turn-helix domain ALEK_0189 PF00465 Iron-containing alcohol dehydrogenase ALEK_0190 PF06719 AraC-type transcriptional regulator N-terminus ALEK_0190 PF12833 Helix-turn-helix domain ALEK_0191 PF00384 Molybdopterin oxidoreductase ALEK_0191 PF18364 Molybdopterin oxidoreductase N-terminal domain ALEK_0191 PF01568 Molydopterin dinucleotide binding domain ALEK_0193 PF00486 Transcriptional regulatory protein, C terminal ALEK_0193 PF00072 Response regulator receiver domain ALEK_0195 PF08447 PAS fold ALEK_0195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0195 PF08448 PAS fold ALEK_0198 PF04107 Glutamate-cysteine ligase family 2(GCS2) ALEK_0200 PF08448 PAS fold ALEK_0200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0200 PF08447 PAS fold ALEK_0204 PF02664 S-Ribosylhomocysteinase (LuxS) ALEK_0206 PF00563 EAL domain ALEK_0206 PF12792 CSS motif domain associated with EAL ALEK_0207 PF05145 Transition state regulatory protein AbrB ALEK_0208 PF03737 Aldolase/RraA ALEK_0209 PF00484 Carbonic anhydrase ALEK_0210 PF08448 PAS fold ALEK_0210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0210 PF08447 PAS fold ALEK_0211 PF00072 Response regulator receiver domain ALEK_0211 PF00486 Transcriptional regulatory protein, C terminal ALEK_0212 PF01970 Tripartite tricarboxylate transporter TctA family ALEK_0215 PF01638 HxlR-like helix-turn-helix ALEK_0216 PF02525 Flavodoxin-like fold ALEK_0217 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALEK_0218 PF10371 Domain of unknown function ALEK_0218 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ALEK_0218 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ALEK_0218 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALEK_0218 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALEK_0220 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ALEK_0221 PF13419 Haloacid dehalogenase-like hydrolase ALEK_0222 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALEK_0223 PF00380 Ribosomal protein S9/S16 ALEK_0224 PF00572 Ribosomal protein L13 ALEK_0225 PF00989 PAS fold ALEK_0225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0225 PF16736 Single Cache-like ALEK_0225 PF00512 His Kinase A (phospho-acceptor) domain ALEK_0226 PF00072 Response regulator receiver domain ALEK_0226 PF00486 Transcriptional regulatory protein, C terminal ALEK_0228 PF01895 PhoU domain ALEK_0229 PF00005 ABC transporter ALEK_0230 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_0231 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_0232 PF00563 EAL domain ALEK_0232 PF12792 CSS motif domain associated with EAL ALEK_0235 PF00472 RF-1 domain ALEK_0235 PF03462 PCRF domain ALEK_0236 PF01649 Ribosomal protein S20 ALEK_0237 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALEK_0237 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALEK_0237 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALEK_0237 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALEK_0238 PF01252 Signal peptidase (SPase) II ALEK_0239 PF00330 Aconitase family (aconitate hydratase) ALEK_0240 PF12804 MobA-like NTP transferase domain ALEK_0243 PF00453 Ribosomal protein L20 ALEK_0244 PF01632 Ribosomal protein L35 ALEK_0245 PF00707 Translation initiation factor IF-3, C-terminal domain ALEK_0245 PF05198 Translation initiation factor IF-3, N-terminal domain ALEK_0246 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALEK_0246 PF03129 Anticodon binding domain ALEK_0246 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALEK_0254 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALEK_0254 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALEK_0258 PF00501 AMP-binding enzyme ALEK_0258 PF02801 Beta-ketoacyl synthase, C-terminal domain ALEK_0258 PF08659 KR domain ALEK_0258 PF00668 Condensation domain ALEK_0258 PF00109 Beta-ketoacyl synthase, N-terminal domain ALEK_0258 PF00550 Phosphopantetheine attachment site ALEK_0258 PF16197 Ketoacyl-synthetase C-terminal extension ALEK_0258 PF13193 AMP-binding enzyme C-terminal domain ALEK_0258 PF14765 Polyketide synthase dehydratase ALEK_0261 PF00005 ABC transporter ALEK_0267 PF00221 Aromatic amino acid lyase ALEK_0271 PF00550 Phosphopantetheine attachment site ALEK_0272 PF02801 Beta-ketoacyl synthase, C-terminal domain ALEK_0272 PF00109 Beta-ketoacyl synthase, N-terminal domain ALEK_0278 PF13288 DXP reductoisomerase C-terminal domain ALEK_0278 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ALEK_0278 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ALEK_0282 PF00814 Glycoprotease family ALEK_0283 PF01253 Translation initiation factor SUI1 ALEK_0284 PF01256 Carbohydrate kinase ALEK_0284 PF03853 YjeF-related protein N-terminus ALEK_0285 PF03091 CutA1 divalent ion tolerance protein ALEK_0286 PF05690 Thiazole biosynthesis protein ThiG ALEK_0305 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALEK_0311 PF03572 Peptidase family S41 ALEK_0311 PF13180 PDZ domain ALEK_0312 PF01259 SAICAR synthetase ALEK_0313 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ALEK_0316 PF01553 Acyltransferase ALEK_0317 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ALEK_0318 PF02416 mttA/Hcf106 family ALEK_0319 PF00750 tRNA synthetases class I (R) ALEK_0319 PF03485 Arginyl tRNA synthetase N terminal domain ALEK_0319 PF05746 DALR anticodon binding domain ALEK_0321 PF01467 Cytidylyltransferase-like ALEK_0322 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALEK_0322 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALEK_0323 PF00162 Phosphoglycerate kinase ALEK_0324 PF00121 Triosephosphate isomerase ALEK_0326 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALEK_0326 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALEK_0327 PF01817 Chorismate mutase type II ALEK_0327 PF00800 Prephenate dehydratase ALEK_0327 PF01842 ACT domain ALEK_0328 PF00155 Aminotransferase class I and II ALEK_0329 PF02780 Transketolase, C-terminal domain ALEK_0329 PF02779 Transketolase, pyrimidine binding domain ALEK_0329 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ALEK_0331 PF00881 Nitroreductase family ALEK_0336 PF00171 Aldehyde dehydrogenase family ALEK_0338 PF02028 BCCT, betaine/carnitine/choline family transporter ALEK_0340 PF00384 Molybdopterin oxidoreductase ALEK_0343 PF07729 FCD domain ALEK_0343 PF00392 Bacterial regulatory proteins, gntR family ALEK_0344 PF03480 Bacterial extracellular solute-binding protein, family 7 ALEK_0346 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALEK_0347 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALEK_0348 PF00291 Pyridoxal-phosphate dependent enzyme ALEK_0349 PF07687 Peptidase dimerisation domain ALEK_0349 PF01546 Peptidase family M20/M25/M40 ALEK_0350 PF00557 Metallopeptidase family M24 ALEK_0350 PF01321 Creatinase/Prolidase N-terminal domain ALEK_0352 PF01212 Beta-eliminating lyase ALEK_0353 PF00510 Cytochrome c oxidase subunit III ALEK_0355 PF02545 Maf-like protein ALEK_0357 PF01817 Chorismate mutase type II ALEK_0357 PF00800 Prephenate dehydratase ALEK_0358 PF00180 Isocitrate/isopropylmalate dehydrogenase ALEK_0359 PF00106 short chain dehydrogenase ALEK_0363 PF09335 SNARE associated Golgi protein ALEK_0365 PF01966 HD domain ALEK_0368 PF00072 Response regulator receiver domain ALEK_0368 PF00486 Transcriptional regulatory protein, C terminal ALEK_0369 PF12282 Signal transduction histidine kinase ALEK_0369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0369 PF07568 Histidine kinase ALEK_0371 PF02332 Methane/Phenol/Toluene Hydroxylase ALEK_0372 PF02406 MmoB/DmpM family ALEK_0373 PF04945 YHS domain ALEK_0373 PF02332 Methane/Phenol/Toluene Hydroxylase ALEK_0374 PF04663 Phenol hydroxylase conserved region ALEK_0375 PF00111 2Fe-2S iron-sulfur cluster binding domain ALEK_0375 PF00175 Oxidoreductase NAD-binding domain ALEK_0375 PF00970 Oxidoreductase FAD-binding domain ALEK_0376 PF01925 Sulfite exporter TauE/SafE ALEK_0377 PF00111 2Fe-2S iron-sulfur cluster binding domain ALEK_0378 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALEK_0379 PF03928 Haem-degrading ALEK_0380 PF00171 Aldehyde dehydrogenase family ALEK_0382 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALEK_0382 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation ALEK_0383 PF00682 HMGL-like ALEK_0383 PF07836 DmpG-like communication domain ALEK_0385 PF01361 Tautomerase enzyme ALEK_0386 PF00296 Luciferase-like monooxygenase ALEK_0387 PF00561 alpha/beta hydrolase fold ALEK_0391 PF00877 NlpC/P60 family ALEK_0392 PF00877 NlpC/P60 family ALEK_0396 PF02272 DHHA1 domain ALEK_0396 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALEK_0396 PF01411 tRNA synthetases class II (A) ALEK_0397 PF00085 Thioredoxin ALEK_0398 PF00085 Thioredoxin ALEK_0399 PF00939 Sodium:sulfate symporter transmembrane region ALEK_0400 PF00989 PAS fold ALEK_0400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0400 PF00512 His Kinase A (phospho-acceptor) domain ALEK_0401 PF00072 Response regulator receiver domain ALEK_0401 PF00486 Transcriptional regulatory protein, C terminal ALEK_0402 PF01235 Sodium:alanine symporter family ALEK_0403 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALEK_0404 PF05173 Dihydrodipicolinate reductase, C-terminus ALEK_0404 PF01113 Dihydrodipicolinate reductase, N-terminus ALEK_0405 PF13537 Glutamine amidotransferase domain ALEK_0405 PF00156 Phosphoribosyl transferase domain ALEK_0406 PF16199 Radical_SAM C-terminal domain ALEK_0406 PF04055 Radical SAM superfamily ALEK_0407 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALEK_0407 PF03466 LysR substrate binding domain ALEK_0408 PF00580 UvrD/REP helicase N-terminal domain ALEK_0408 PF13361 UvrD-like helicase C-terminal domain ALEK_0409 PF01509 TruB family pseudouridylate synthase (N terminal domain) ALEK_0410 PF00288 GHMP kinases N terminal domain ALEK_0411 PF01668 SmpB protein ALEK_0412 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALEK_0415 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALEK_0415 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ALEK_0421 PF03462 PCRF domain ALEK_0421 PF00472 RF-1 domain ALEK_0425 PF02660 Glycerol-3-phosphate acyltransferase ALEK_0426 PF02445 Quinolinate synthetase A protein ALEK_0427 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALEK_0427 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALEK_0430 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ALEK_0432 PF08544 GHMP kinases C terminal ALEK_0432 PF00288 GHMP kinases N terminal domain ALEK_0434 PF11987 Translation-initiation factor 2 ALEK_0434 PF00009 Elongation factor Tu GTP binding domain ALEK_0434 PF04760 Translation initiation factor IF-2, N-terminal region ALEK_0435 PF02033 Ribosome-binding factor A ALEK_0436 PF02576 RimP N-terminal domain ALEK_0437 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALEK_0437 PF01872 RibD C-terminal domain ALEK_0438 PF08207 Elongation factor P (EF-P) KOW-like domain ALEK_0438 PF09285 Elongation factor P, C-terminal ALEK_0438 PF01132 Elongation factor P (EF-P) OB domain ALEK_0439 PF01842 ACT domain ALEK_0439 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALEK_0439 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALEK_0440 PF00575 S1 RNA binding domain ALEK_0441 PF02401 LytB protein ALEK_0442 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALEK_0443 PF03484 tRNA synthetase B5 domain ALEK_0443 PF03147 Ferredoxin-fold anticodon binding domain ALEK_0443 PF01588 Putative tRNA binding domain ALEK_0443 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ALEK_0444 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ALEK_0444 PF01409 tRNA synthetases class II core domain (F) ALEK_0445 PF01230 HIT domain ALEK_0446 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ALEK_0447 PF02801 Beta-ketoacyl synthase, C-terminal domain ALEK_0447 PF00109 Beta-ketoacyl synthase, N-terminal domain ALEK_0448 PF00550 Phosphopantetheine attachment site ALEK_0450 PF04055 Radical SAM superfamily ALEK_0452 PF06508 Queuosine biosynthesis protein QueC ALEK_0453 PF03454 MoeA C-terminal region (domain IV) ALEK_0453 PF03453 MoeA N-terminal region (domain I and II) ALEK_0453 PF00994 Probable molybdopterin binding domain ALEK_0455 PF04452 RNA methyltransferase ALEK_0458 PF00032 Cytochrome b(C-terminal)/b6/petD ALEK_0458 PF00033 Cytochrome b/b6/petB ALEK_0459 PF00355 Rieske [2Fe-2S] domain ALEK_0459 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ALEK_0460 PF00291 Pyridoxal-phosphate dependent enzyme ALEK_0461 PF00696 Amino acid kinase family ALEK_0462 PF00990 Diguanylate cyclase, GGDEF domain ALEK_0463 PF00580 UvrD/REP helicase N-terminal domain ALEK_0463 PF13361 UvrD-like helicase C-terminal domain ALEK_0465 PF00119 ATP synthase A chain ALEK_0466 PF00291 Pyridoxal-phosphate dependent enzyme ALEK_0466 PF13291 ACT domain ALEK_0467 PF01746 tRNA (Guanine-1)-methyltransferase ALEK_0468 PF01245 Ribosomal protein L19 ALEK_0470 PF09335 SNARE associated Golgi protein ALEK_0472 PF00005 ABC transporter ALEK_0474 PF00701 Dihydrodipicolinate synthetase family ALEK_0475 PF00171 Aldehyde dehydrogenase family ALEK_0476 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALEK_0477 PF05544 Proline racemase ALEK_0478 PF01266 FAD dependent oxidoreductase ALEK_0479 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_0480 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_0481 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_0482 PF00005 ABC transporter ALEK_0483 PF13378 Enolase C-terminal domain-like ALEK_0483 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALEK_0485 PF05544 Proline racemase ALEK_0486 PF07729 FCD domain ALEK_0486 PF00392 Bacterial regulatory proteins, gntR family ALEK_0491 PF02653 Branched-chain amino acid transport system / permease component ALEK_0492 PF11862 Domain of unknown function (DUF3382) ALEK_0492 PF02653 Branched-chain amino acid transport system / permease component ALEK_0493 PF00005 ABC transporter ALEK_0493 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALEK_0494 PF00005 ABC transporter ALEK_0495 PF00171 Aldehyde dehydrogenase family ALEK_0497 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_0497 PF00672 HAMP domain ALEK_0497 PF02203 Tar ligand binding domain homologue ALEK_0500 PF13188 PAS domain ALEK_0500 PF08448 PAS fold ALEK_0500 PF00072 Response regulator receiver domain ALEK_0500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0500 PF00512 His Kinase A (phospho-acceptor) domain ALEK_0504 PF03309 Type III pantothenate kinase ALEK_0505 PF01634 ATP phosphoribosyltransferase ALEK_0509 PF00691 OmpA family ALEK_0510 PF08448 PAS fold ALEK_0510 PF08447 PAS fold ALEK_0510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0511 PF00072 Response regulator receiver domain ALEK_0511 PF00486 Transcriptional regulatory protein, C terminal ALEK_0515 PF00664 ABC transporter transmembrane region ALEK_0515 PF00005 ABC transporter ALEK_0515 PF03412 Peptidase C39 family ALEK_0517 PF00196 Bacterial regulatory proteins, luxR family ALEK_0517 PF00072 Response regulator receiver domain ALEK_0518 PF00579 tRNA synthetases class I (W and Y) ALEK_0521 PF00591 Glycosyl transferase family, a/b domain ALEK_0521 PF02885 Glycosyl transferase family, helical bundle domain ALEK_0526 PF10414 Sirohaem synthase dimerisation region ALEK_0526 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALEK_0528 PF13186 Iron-sulfur cluster-binding domain ALEK_0528 PF04055 Radical SAM superfamily ALEK_0528 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ALEK_0535 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALEK_0536 PF00034 Cytochrome c ALEK_0538 PF00072 Response regulator receiver domain ALEK_0538 PF12833 Helix-turn-helix domain ALEK_0539 PF08447 PAS fold ALEK_0539 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0539 PF08448 PAS fold ALEK_0541 PF00593 TonB dependent receptor ALEK_0541 PF07715 TonB-dependent Receptor Plug Domain ALEK_0542 PF00512 His Kinase A (phospho-acceptor) domain ALEK_0542 PF13188 PAS domain ALEK_0542 PF00989 PAS fold ALEK_0542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0542 PF13426 PAS domain ALEK_0544 PF12833 Helix-turn-helix domain ALEK_0544 PF00072 Response regulator receiver domain ALEK_0551 PF07664 Ferrous iron transport protein B C terminus ALEK_0551 PF17910 FeoB cytosolic helical domain ALEK_0551 PF02421 Ferrous iron transport protein B ALEK_0551 PF07670 Nucleoside recognition ALEK_0554 PF03544 Gram-negative bacterial TonB protein C-terminal ALEK_0555 PF02472 Biopolymer transport protein ExbD/TolR ALEK_0556 PF01618 MotA/TolQ/ExbB proton channel family ALEK_0557 PF01618 MotA/TolQ/ExbB proton channel family ALEK_0561 PF07715 TonB-dependent Receptor Plug Domain ALEK_0562 PF02403 Seryl-tRNA synthetase N-terminal domain ALEK_0562 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALEK_0565 PF00107 Zinc-binding dehydrogenase ALEK_0565 PF08240 Alcohol dehydrogenase GroES-like domain ALEK_0572 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ALEK_0573 PF00037 4Fe-4S binding domain ALEK_0573 PF12801 4Fe-4S binding domain ALEK_0574 PF12800 4Fe-4S binding domain ALEK_0574 PF12838 4Fe-4S dicluster domain ALEK_0575 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALEK_0575 PF01568 Molydopterin dinucleotide binding domain ALEK_0575 PF10518 TAT (twin-arginine translocation) pathway signal sequence ALEK_0575 PF00384 Molybdopterin oxidoreductase ALEK_0577 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALEK_0577 PF14824 Sirohaem biosynthesis protein central ALEK_0577 PF10414 Sirohaem synthase dimerisation region ALEK_0579 PF02203 Tar ligand binding domain homologue ALEK_0579 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_0579 PF00672 HAMP domain ALEK_0580 PF03315 Serine dehydratase beta chain ALEK_0580 PF03313 Serine dehydratase alpha chain ALEK_0581 PF00005 ABC transporter ALEK_0582 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_0583 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_0584 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_0585 PF14824 Sirohaem biosynthesis protein central ALEK_0585 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALEK_0585 PF10414 Sirohaem synthase dimerisation region ALEK_0588 PF00591 Glycosyl transferase family, a/b domain ALEK_0588 PF02885 Glycosyl transferase family, helical bundle domain ALEK_0589 PF04055 Radical SAM superfamily ALEK_0589 PF06463 Molybdenum Cofactor Synthesis C ALEK_0590 PF00990 Diguanylate cyclase, GGDEF domain ALEK_0590 PF00563 EAL domain ALEK_0590 PF10442 FIST C domain ALEK_0590 PF08495 FIST N domain ALEK_0592 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_0592 PF02203 Tar ligand binding domain homologue ALEK_0592 PF00672 HAMP domain ALEK_0593 PF00312 Ribosomal protein S15 ALEK_0596 PF13380 CoA binding domain ALEK_0597 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0597 PF08521 Two-component sensor kinase N-terminal ALEK_0597 PF00512 His Kinase A (phospho-acceptor) domain ALEK_0598 PF00072 Response regulator receiver domain ALEK_0598 PF00486 Transcriptional regulatory protein, C terminal ALEK_0599 PF00639 PPIC-type PPIASE domain ALEK_0600 PF01116 Fructose-bisphosphate aldolase class-II ALEK_0602 PF12833 Helix-turn-helix domain ALEK_0603 PF02789 Cytosol aminopeptidase family, N-terminal domain ALEK_0603 PF00883 Cytosol aminopeptidase family, catalytic domain ALEK_0607 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_0608 PF00005 ABC transporter ALEK_0612 PF00005 ABC transporter ALEK_0612 PF08402 TOBE domain ALEK_0615 PF12706 Beta-lactamase superfamily domain ALEK_0616 PF03070 TENA/THI-4/PQQC family ALEK_0617 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ALEK_0618 PF04055 Radical SAM superfamily ALEK_0618 PF13186 Iron-sulfur cluster-binding domain ALEK_0620 PF00072 Response regulator receiver domain ALEK_0620 PF00486 Transcriptional regulatory protein, C terminal ALEK_0621 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0621 PF00512 His Kinase A (phospho-acceptor) domain ALEK_0621 PF00072 Response regulator receiver domain ALEK_0621 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_0622 PF00171 Aldehyde dehydrogenase family ALEK_0624 PF02472 Biopolymer transport protein ExbD/TolR ALEK_0625 PF01618 MotA/TolQ/ExbB proton channel family ALEK_0627 PF00563 EAL domain ALEK_0627 PF00990 Diguanylate cyclase, GGDEF domain ALEK_0627 PF03707 Bacterial signalling protein N terminal repeat ALEK_0628 PF01202 Shikimate kinase ALEK_0629 PF00815 Histidinol dehydrogenase ALEK_0631 PF00348 Polyprenyl synthetase ALEK_0632 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ALEK_0632 PF01488 Shikimate / quinate 5-dehydrogenase ALEK_0632 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ALEK_0633 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALEK_0633 PF03129 Anticodon binding domain ALEK_0633 PF04073 Aminoacyl-tRNA editing domain ALEK_0634 PF00924 Mechanosensitive ion channel ALEK_0634 PF05552 Conserved TM helix ALEK_0635 PF01966 HD domain ALEK_0635 PF01743 Poly A polymerase head domain ALEK_0635 PF12627 Probable RNA and SrmB- binding site of polymerase A ALEK_0636 PF00924 Mechanosensitive ion channel ALEK_0636 PF05552 Conserved TM helix ALEK_0638 PF02699 Preprotein translocase subunit ALEK_0639 PF02355 Protein export membrane protein ALEK_0640 PF02355 Protein export membrane protein ALEK_0640 PF07549 SecD/SecF GG Motif ALEK_0645 PF09334 tRNA synthetases class I (M) ALEK_0645 PF00133 tRNA synthetases class I (I, L, M and V) ALEK_0645 PF13603 Leucyl-tRNA synthetase, Domain 2 ALEK_0647 PF08245 Mur ligase middle domain ALEK_0648 PF04225 Opacity-associated protein A LysM-like domain ALEK_0648 PF01551 Peptidase family M23 ALEK_0650 PF00270 DEAD/DEAH box helicase ALEK_0650 PF00271 Helicase conserved C-terminal domain ALEK_0651 PF00999 Sodium/hydrogen exchanger family ALEK_0651 PF02254 TrkA-N domain ALEK_0653 PF00486 Transcriptional regulatory protein, C terminal ALEK_0653 PF00072 Response regulator receiver domain ALEK_0654 PF08447 PAS fold ALEK_0654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0654 PF08448 PAS fold ALEK_0659 PF13533 Biotin-lipoyl like ALEK_0660 PF00873 AcrB/AcrD/AcrF family ALEK_0663 PF04286 Protein of unknown function (DUF445) ALEK_0664 PF03824 High-affinity nickel-transport protein ALEK_0668 PF01502 Phosphoribosyl-AMP cyclohydrolase ALEK_0668 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ALEK_0669 PF04909 Amidohydrolase ALEK_0670 PF00486 Transcriptional regulatory protein, C terminal ALEK_0670 PF00072 Response regulator receiver domain ALEK_0671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0671 PF18719 ArlS sensor domain ALEK_0671 PF00512 His Kinase A (phospho-acceptor) domain ALEK_0673 PF17757 UvrB interaction domain ALEK_0673 PF02559 CarD-like/TRCF domain ALEK_0673 PF00270 DEAD/DEAH box helicase ALEK_0673 PF00271 Helicase conserved C-terminal domain ALEK_0673 PF03461 TRCF domain ALEK_0674 PF09297 NADH pyrophosphatase zinc ribbon domain ALEK_0674 PF00293 NUDIX domain ALEK_0674 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ALEK_0679 PF00360 Phytochrome region ALEK_0679 PF00990 Diguanylate cyclase, GGDEF domain ALEK_0679 PF01590 GAF domain ALEK_0679 PF00563 EAL domain ALEK_0682 PF02630 SCO1/SenC ALEK_0684 PF00072 Response regulator receiver domain ALEK_0684 PF00486 Transcriptional regulatory protein, C terminal ALEK_0687 PF13277 YmdB-like protein ALEK_0691 PF01209 ubiE/COQ5 methyltransferase family ALEK_0692 PF13742 OB-fold nucleic acid binding domain ALEK_0692 PF02601 Exonuclease VII, large subunit ALEK_0693 PF01584 CheW-like domain ALEK_0694 PF00072 Response regulator receiver domain ALEK_0695 PF02954 Bacterial regulatory protein, Fis family ALEK_0695 PF00072 Response regulator receiver domain ALEK_0695 PF00158 Sigma-54 interaction domain ALEK_0696 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALEK_0698 PF02261 Aspartate decarboxylase ALEK_0699 PF02575 YbaB/EbfC DNA-binding family ALEK_0700 PF00348 Polyprenyl synthetase ALEK_0701 PF00166 Chaperonin 10 Kd subunit ALEK_0702 PF00118 TCP-1/cpn60 chaperonin family ALEK_0704 PF12852 Cupin ALEK_0704 PF12833 Helix-turn-helix domain ALEK_0705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0705 PF08448 PAS fold ALEK_0705 PF08447 PAS fold ALEK_0707 PF00072 Response regulator receiver domain ALEK_0708 PF00459 Inositol monophosphatase family ALEK_0710 PF01380 SIS domain ALEK_0711 PF02773 S-adenosylmethionine synthetase, C-terminal domain ALEK_0711 PF02772 S-adenosylmethionine synthetase, central domain ALEK_0711 PF00438 S-adenosylmethionine synthetase, N-terminal domain ALEK_0712 PF17848 Acetyl-coA carboxylase zinc finger domain ALEK_0712 PF01039 Carboxyl transferase domain ALEK_0713 PF02581 Thiamine monophosphate synthase ALEK_0714 PF02590 Predicted SPOUT methyltransferase ALEK_0715 PF01258 Prokaryotic dksA/traR C4-type zinc finger ALEK_0717 PF01207 Dihydrouridine synthase (Dus) ALEK_0719 PF01434 Peptidase family M41 ALEK_0719 PF17862 AAA+ lid domain ALEK_0719 PF00004 ATPase family associated with various cellular activities (AAA) ALEK_0720 PF08448 PAS fold ALEK_0720 PF08447 PAS fold ALEK_0720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0721 PF00360 Phytochrome region ALEK_0721 PF00563 EAL domain ALEK_0721 PF00990 Diguanylate cyclase, GGDEF domain ALEK_0721 PF01590 GAF domain ALEK_0722 PF00682 HMGL-like ALEK_0722 PF08502 LeuA allosteric (dimerisation) domain ALEK_0723 PF07556 Protein of unknown function (DUF1538) ALEK_0726 PF00488 MutS domain V ALEK_0726 PF05192 MutS domain III ALEK_0726 PF05188 MutS domain II ALEK_0726 PF01624 MutS domain I ALEK_0726 PF05190 MutS family domain IV ALEK_0730 PF00977 Histidine biosynthesis protein ALEK_0732 PF08338 Domain of unknown function (DUF1731) ALEK_0732 PF01370 NAD dependent epimerase/dehydratase family ALEK_0733 PF00117 Glutamine amidotransferase class-I ALEK_0735 PF11849 Domain of unknown function (DUF3369) ALEK_0737 PF00679 Elongation factor G C-terminus ALEK_0737 PF00009 Elongation factor Tu GTP binding domain ALEK_0737 PF03144 Elongation factor Tu domain 2 ALEK_0737 PF06421 GTP-binding protein LepA C-terminus ALEK_0738 PF00691 OmpA family ALEK_0738 PF13488 Glycine zipper ALEK_0739 PF00691 OmpA family ALEK_0739 PF05736 OprF membrane domain ALEK_0740 PF05736 OprF membrane domain ALEK_0740 PF00691 OmpA family ALEK_0741 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ALEK_0741 PF14572 Phosphoribosyl synthetase-associated domain ALEK_0744 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ALEK_0745 PF00557 Metallopeptidase family M24 ALEK_0745 PF01321 Creatinase/Prolidase N-terminal domain ALEK_0746 PF01220 Dehydroquinase class II ALEK_0747 PF01979 Amidohydrolase family ALEK_0748 PF01343 Peptidase family S49 ALEK_0749 PF00271 Helicase conserved C-terminal domain ALEK_0749 PF00270 DEAD/DEAH box helicase ALEK_0750 PF00871 Acetokinase family ALEK_0751 PF01515 Phosphate acetyl/butaryl transferase ALEK_0752 PF00871 Acetokinase family ALEK_0753 PF00929 Exonuclease ALEK_0755 PF00474 Sodium:solute symporter family ALEK_0757 PF00474 Sodium:solute symporter family ALEK_0759 PF11490 DNA polymerase III polC-type N-terminus II ALEK_0759 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALEK_0759 PF02811 PHP domain ALEK_0759 PF14579 Helix-hairpin-helix motif ALEK_0759 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALEK_0759 PF00929 Exonuclease ALEK_0759 PF01336 OB-fold nucleic acid binding domain ALEK_0761 PF00474 Sodium:solute symporter family ALEK_0763 PF00072 Response regulator receiver domain ALEK_0763 PF00486 Transcriptional regulatory protein, C terminal ALEK_0764 PF00672 HAMP domain ALEK_0764 PF00512 His Kinase A (phospho-acceptor) domain ALEK_0764 PF13426 PAS domain ALEK_0764 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0785 PF00994 Probable molybdopterin binding domain ALEK_0785 PF02464 Competence-damaged protein ALEK_0785 PF18146 Damage-inducible protein CinA KH domain ALEK_0786 PF06039 Malate:quinone oxidoreductase (Mqo) ALEK_0787 PF00133 tRNA synthetases class I (I, L, M and V) ALEK_0787 PF08264 Anticodon-binding domain of tRNA ALEK_0791 PF02875 Mur ligase family, glutamate ligase domain ALEK_0791 PF08245 Mur ligase middle domain ALEK_0795 PF01882 Protein of unknown function DUF58 ALEK_0796 PF07726 ATPase family associated with various cellular activities (AAA) ALEK_0796 PF17863 AAA lid domain ALEK_0797 PF07568 Histidine kinase ALEK_0797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0797 PF12282 Signal transduction histidine kinase ALEK_0798 PF00486 Transcriptional regulatory protein, C terminal ALEK_0798 PF00072 Response regulator receiver domain ALEK_0801 PF00318 Ribosomal protein S2 ALEK_0802 PF00889 Elongation factor TS ALEK_0803 PF00005 ABC transporter ALEK_0805 PF00625 Guanylate kinase ALEK_0806 PF00990 Diguanylate cyclase, GGDEF domain ALEK_0806 PF08448 PAS fold ALEK_0806 PF00563 EAL domain ALEK_0807 PF00403 Heavy-metal-associated domain ALEK_0810 PF00005 ABC transporter ALEK_0811 PF00762 Ferrochelatase ALEK_0813 PF01875 Memo-like protein ALEK_0814 PF02698 DUF218 domain ALEK_0815 PF00005 ABC transporter ALEK_0816 PF00950 ABC 3 transport family ALEK_0817 PF17783 CvfB-like winged helix domain ALEK_0817 PF13509 S1 domain ALEK_0818 PF08534 Redoxin ALEK_0820 PF00174 Oxidoreductase molybdopterin binding domain ALEK_0821 PF01794 Ferric reductase like transmembrane component ALEK_0822 PF13361 UvrD-like helicase C-terminal domain ALEK_0822 PF00580 UvrD/REP helicase N-terminal domain ALEK_0823 PF00990 Diguanylate cyclase, GGDEF domain ALEK_0823 PF17151 Periplasmic sensor domain ALEK_0824 PF10458 Valyl tRNA synthetase tRNA binding arm ALEK_0824 PF08264 Anticodon-binding domain of tRNA ALEK_0824 PF00133 tRNA synthetases class I (I, L, M and V) ALEK_0826 PF00873 AcrB/AcrD/AcrF family ALEK_0829 PF07690 Major Facilitator Superfamily ALEK_0830 PF01725 Ham1 family ALEK_0834 PF03807 NADP oxidoreductase coenzyme F420-dependent ALEK_0834 PF14748 Pyrroline-5-carboxylate reductase dimerisation ALEK_0835 PF13525 Outer membrane lipoprotein ALEK_0836 PF00004 ATPase family associated with various cellular activities (AAA) ALEK_0836 PF02190 ATP-dependent protease La (LON) substrate-binding domain ALEK_0836 PF05362 Lon protease (S16) C-terminal proteolytic domain ALEK_0839 PF12833 Helix-turn-helix domain ALEK_0839 PF02311 AraC-like ligand binding domain ALEK_0840 PF01810 LysE type translocator ALEK_0842 PF00817 impB/mucB/samB family ALEK_0842 PF11799 impB/mucB/samB family C-terminal domain ALEK_0842 PF11798 IMS family HHH motif ALEK_0845 PF00672 HAMP domain ALEK_0845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_0845 PF02203 Tar ligand binding domain homologue ALEK_0846 PF00924 Mechanosensitive ion channel ALEK_0847 PF08447 PAS fold ALEK_0847 PF08448 PAS fold ALEK_0847 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_0853 PF02743 Cache domain ALEK_0853 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_0853 PF00672 HAMP domain ALEK_0854 PF00137 ATP synthase subunit C ALEK_0855 PF02203 Tar ligand binding domain homologue ALEK_0855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_0855 PF00672 HAMP domain ALEK_0860 PF04116 Fatty acid hydroxylase superfamily ALEK_0861 PF03150 Di-haem cytochrome c peroxidase ALEK_0864 PF00440 Bacterial regulatory proteins, tetR family ALEK_0864 PF18665 Tetracyclin repressor-like, C-terminal domain ALEK_0865 PF13533 Biotin-lipoyl like ALEK_0866 PF00873 AcrB/AcrD/AcrF family ALEK_0868 PF00375 Sodium:dicarboxylate symporter family ALEK_0871 PF12833 Helix-turn-helix domain ALEK_0871 PF02311 AraC-like ligand binding domain ALEK_0872 PF06965 Na+/H+ antiporter 1 ALEK_0877 PF03824 High-affinity nickel-transport protein ALEK_0880 PF01053 Cys/Met metabolism PLP-dependent enzyme ALEK_0881 PF01053 Cys/Met metabolism PLP-dependent enzyme ALEK_0886 PF04371 Porphyromonas-type peptidyl-arginine deiminase ALEK_0889 PF01142 tRNA pseudouridine synthase D (TruD) ALEK_0891 PF00085 Thioredoxin ALEK_0892 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ALEK_0894 PF00440 Bacterial regulatory proteins, tetR family ALEK_0894 PF16295 Tetracyclin repressor-like, C-terminal domain ALEK_0897 PF00873 AcrB/AcrD/AcrF family ALEK_0899 PF00892 EamA-like transporter family ALEK_0901 PF01894 Uncharacterised protein family UPF0047 ALEK_0907 PF03737 Aldolase/RraA ALEK_0908 PF13726 Na+-H+ antiporter family ALEK_0908 PF03553 Na+/H+ antiporter family ALEK_0910 PF00563 EAL domain ALEK_0910 PF08495 FIST N domain ALEK_0910 PF10442 FIST C domain ALEK_0910 PF00990 Diguanylate cyclase, GGDEF domain ALEK_0911 PF01883 Iron-sulfur cluster assembly protein ALEK_0912 PF02657 Fe-S metabolism associated domain ALEK_0913 PF00266 Aminotransferase class-V ALEK_0915 PF00005 ABC transporter ALEK_0916 PF01458 Uncharacterized protein family (UPF0051) ALEK_0917 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_0919 PF00266 Aminotransferase class-V ALEK_0920 PF04324 BFD-like [2Fe-2S] binding domain ALEK_0920 PF01592 NifU-like N terminal domain ALEK_0920 PF01106 NifU-like domain ALEK_0921 PF01925 Sulfite exporter TauE/SafE ALEK_0925 PF00206 Lyase ALEK_0925 PF14698 Argininosuccinate lyase C-terminal ALEK_0926 PF00072 Response regulator receiver domain ALEK_0926 PF01584 CheW-like domain ALEK_0927 PF00899 ThiF family ALEK_0928 PF01272 Transcription elongation factor, GreA/GreB, C-term ALEK_0928 PF03449 Transcription elongation factor, N-terminal ALEK_0929 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALEK_0929 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALEK_0932 PF17757 UvrB interaction domain ALEK_0932 PF00271 Helicase conserved C-terminal domain ALEK_0932 PF04851 Type III restriction enzyme, res subunit ALEK_0932 PF02151 UvrB/uvrC motif ALEK_0932 PF12344 Ultra-violet resistance protein B ALEK_0933 PF00730 HhH-GPD superfamily base excision DNA repair protein ALEK_0933 PF00633 Helix-hairpin-helix motif ALEK_0933 PF10576 Iron-sulfur binding domain of endonuclease III ALEK_0934 PF00753 Metallo-beta-lactamase superfamily ALEK_0934 PF12706 Beta-lactamase superfamily domain ALEK_0938 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ALEK_0938 PF01266 FAD dependent oxidoreductase ALEK_0942 PF02502 Ribose/Galactose Isomerase ALEK_0943 PF10502 Signal peptidase, peptidase S26 ALEK_0944 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ALEK_0944 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ALEK_0945 PF14693 Ribosomal protein TL5, C-terminal domain ALEK_0945 PF01386 Ribosomal L25p family ALEK_0946 PF01195 Peptidyl-tRNA hydrolase ALEK_0949 PF01520 N-acetylmuramoyl-L-alanine amidase ALEK_0951 PF00579 tRNA synthetases class I (W and Y) ALEK_0951 PF01479 S4 domain ALEK_0952 PF04607 Region found in RelA / SpoT proteins ALEK_0952 PF13291 ACT domain ALEK_0952 PF02824 TGS domain ALEK_0953 PF01192 RNA polymerase Rpb6 ALEK_0954 PF00696 Amino acid kinase family ALEK_0956 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ALEK_0957 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ALEK_0958 PF00425 chorismate binding enzyme ALEK_0958 PF04715 Anthranilate synthase component I, N terminal region ALEK_0960 PF00464 Serine hydroxymethyltransferase ALEK_0961 PF01336 OB-fold nucleic acid binding domain ALEK_0961 PF00152 tRNA synthetases class II (D, K and N) ALEK_0963 PF04551 GcpE protein ALEK_0964 PF03796 DnaB-like helicase C terminal domain ALEK_0964 PF00772 DnaB-like helicase N terminal domain ALEK_0966 PF14743 DNA ligase OB-like domain ALEK_0966 PF01068 ATP dependent DNA ligase domain ALEK_0971 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALEK_0971 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALEK_0971 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALEK_0972 PF00483 Nucleotidyl transferase ALEK_0973 PF00342 Phosphoglucose isomerase ALEK_0974 PF02350 UDP-N-acetylglucosamine 2-epimerase ALEK_0975 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALEK_0975 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALEK_0975 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALEK_0976 PF01370 NAD dependent epimerase/dehydratase family ALEK_0977 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALEK_0977 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALEK_0977 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALEK_0978 PF08666 SAF domain ALEK_0978 PF03102 NeuB family ALEK_0979 PF02350 UDP-N-acetylglucosamine 2-epimerase ALEK_0980 PF00977 Histidine biosynthesis protein ALEK_0981 PF00117 Glutamine amidotransferase class-I ALEK_0983 PF02348 Cytidylyltransferase ALEK_0986 PF08666 SAF domain ALEK_0986 PF03102 NeuB family ALEK_0987 PF02350 UDP-N-acetylglucosamine 2-epimerase ALEK_0988 PF02348 Cytidylyltransferase ALEK_0988 PF13472 GDSL-like Lipase/Acylhydrolase family ALEK_0990 PF00132 Bacterial transferase hexapeptide (six repeats) ALEK_0993 PF00294 pfkB family carbohydrate kinase ALEK_0995 PF00288 GHMP kinases N terminal domain ALEK_0995 PF08544 GHMP kinases C terminal ALEK_0996 PF13580 SIS domain ALEK_0997 PF00483 Nucleotidyl transferase ALEK_0998 PF08645 Polynucleotide kinase 3 phosphatase ALEK_1003 PF08240 Alcohol dehydrogenase GroES-like domain ALEK_1003 PF00107 Zinc-binding dehydrogenase ALEK_1006 PF00953 Glycosyl transferase family 4 ALEK_1008 PF01370 NAD dependent epimerase/dehydratase family ALEK_1009 PF01050 Mannose-6-phosphate isomerase ALEK_1009 PF00483 Nucleotidyl transferase ALEK_1010 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALEK_1010 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALEK_1010 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALEK_1010 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALEK_1011 PF16363 GDP-mannose 4,6 dehydratase ALEK_1012 PF00156 Phosphoribosyl transferase domain ALEK_1013 PF00291 Pyridoxal-phosphate dependent enzyme ALEK_1015 PF00883 Cytosol aminopeptidase family, catalytic domain ALEK_1015 PF02789 Cytosol aminopeptidase family, N-terminal domain ALEK_1016 PF01568 Molydopterin dinucleotide binding domain ALEK_1016 PF10518 TAT (twin-arginine translocation) pathway signal sequence ALEK_1016 PF00384 Molybdopterin oxidoreductase ALEK_1016 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALEK_1017 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ALEK_1018 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ALEK_1019 PF00072 Response regulator receiver domain ALEK_1019 PF00486 Transcriptional regulatory protein, C terminal ALEK_1020 PF02384 N-6 DNA Methylase ALEK_1021 PF01420 Type I restriction modification DNA specificity domain ALEK_1026 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ALEK_1026 PF11867 Domain of unknown function (DUF3387) ALEK_1026 PF18766 SWI2/SNF2 ATPase ALEK_1027 PF13195 Protein of unknown function (DUF4011) ALEK_1027 PF13086 AAA domain ALEK_1027 PF13087 AAA domain ALEK_1027 PF13195 Protein of unknown function (DUF4011) ALEK_1027 PF13087 AAA domain ALEK_1027 PF13086 AAA domain ALEK_1028 PF00239 Resolvase, N terminal domain ALEK_1028 PF02796 Helix-turn-helix domain of resolvase ALEK_1041 PF01926 50S ribosome-binding GTPase ALEK_1041 PF06071 Protein of unknown function (DUF933) ALEK_1046 PF06865 Pyrimidine/purine nucleoside phosphorylase ALEK_1049 PF02769 AIR synthase related protein, C-terminal domain ALEK_1049 PF00586 AIR synthase related protein, N-terminal domain ALEK_1050 PF01142 tRNA pseudouridine synthase D (TruD) ALEK_1052 PF00672 HAMP domain ALEK_1052 PF02203 Tar ligand binding domain homologue ALEK_1052 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1053 PF07499 RuvA, C-terminal domain ALEK_1053 PF01330 RuvA N terminal domain ALEK_1054 PF07478 D-ala D-ala ligase C-terminus ALEK_1054 PF01820 D-ala D-ala ligase N-terminus ALEK_1056 PF08245 Mur ligase middle domain ALEK_1057 PF01230 HIT domain ALEK_1063 PF02954 Bacterial regulatory protein, Fis family ALEK_1063 PF00158 Sigma-54 interaction domain ALEK_1065 PF08360 QacR-like protein, C-terminal region ALEK_1065 PF00440 Bacterial regulatory proteins, tetR family ALEK_1069 PF02311 AraC-like ligand binding domain ALEK_1069 PF12833 Helix-turn-helix domain ALEK_1071 PF00338 Ribosomal protein S10p/S20e ALEK_1072 PF00297 Ribosomal protein L3 ALEK_1073 PF00573 Ribosomal protein L4/L1 family ALEK_1074 PF00276 Ribosomal protein L23 ALEK_1075 PF00181 Ribosomal Proteins L2, RNA binding domain ALEK_1075 PF03947 Ribosomal Proteins L2, C-terminal domain ALEK_1076 PF00203 Ribosomal protein S19 ALEK_1077 PF00237 Ribosomal protein L22p/L17e ALEK_1078 PF07650 KH domain ALEK_1078 PF00189 Ribosomal protein S3, C-terminal domain ALEK_1079 PF00252 Ribosomal protein L16p/L10e ALEK_1080 PF00831 Ribosomal L29 protein ALEK_1081 PF00366 Ribosomal protein S17 ALEK_1082 PF00238 Ribosomal protein L14p/L23e ALEK_1083 PF00467 KOW motif ALEK_1083 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ALEK_1084 PF00281 Ribosomal protein L5 ALEK_1084 PF00673 ribosomal L5P family C-terminus ALEK_1085 PF00253 Ribosomal protein S14p/S29e ALEK_1086 PF00410 Ribosomal protein S8 ALEK_1087 PF00347 Ribosomal protein L6 ALEK_1088 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ALEK_1089 PF03719 Ribosomal protein S5, C-terminal domain ALEK_1089 PF00333 Ribosomal protein S5, N-terminal domain ALEK_1090 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ALEK_1091 PF00344 SecY translocase ALEK_1092 PF00557 Metallopeptidase family M24 ALEK_1093 PF01176 Translation initiation factor 1A / IF-1 ALEK_1095 PF03167 Uracil DNA glycosylase superfamily ALEK_1097 PF00152 tRNA synthetases class II (D, K and N) ALEK_1097 PF01336 OB-fold nucleic acid binding domain ALEK_1097 PF02938 GAD domain ALEK_1100 PF08497 Radical SAM N-terminal ALEK_1100 PF04055 Radical SAM superfamily ALEK_1102 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1102 PF00672 HAMP domain ALEK_1102 PF02203 Tar ligand binding domain homologue ALEK_1105 PF00842 Alanine racemase, C-terminal domain ALEK_1105 PF01168 Alanine racemase, N-terminal domain ALEK_1106 PF01541 GIY-YIG catalytic domain ALEK_1106 PF02151 UvrB/uvrC motif ALEK_1106 PF08459 UvrC Helix-hairpin-helix N-terminal ALEK_1111 PF00255 Glutathione peroxidase ALEK_1112 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1112 PF17158 Membrane-associated sensor, integral membrane domain ALEK_1116 PF00226 DnaJ domain ALEK_1116 PF00684 DnaJ central domain ALEK_1116 PF01556 DnaJ C terminal domain ALEK_1117 PF02652 L-lactate permease ALEK_1119 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1119 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1119 PF00989 PAS fold ALEK_1121 PF00226 DnaJ domain ALEK_1121 PF01556 DnaJ C terminal domain ALEK_1121 PF00684 DnaJ central domain ALEK_1126 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1126 PF00672 HAMP domain ALEK_1126 PF17200 Single Cache domain 2 ALEK_1126 PF00672 HAMP domain ALEK_1126 PF17200 Single Cache domain 2 ALEK_1126 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1129 PF00149 Calcineurin-like phosphoesterase ALEK_1130 PF00933 Glycosyl hydrolase family 3 N terminal domain ALEK_1130 PF01915 Glycosyl hydrolase family 3 C-terminal domain ALEK_1132 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1132 PF07694 5TMR of 5TMR-LYT ALEK_1136 PF03372 Endonuclease/Exonuclease/phosphatase family ALEK_1137 PF00440 Bacterial regulatory proteins, tetR family ALEK_1143 PF17932 Tetracyclin repressor-like, C-terminal domain ALEK_1143 PF00440 Bacterial regulatory proteins, tetR family ALEK_1145 PF07690 Major Facilitator Superfamily ALEK_1149 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1149 PF08447 PAS fold ALEK_1149 PF08448 PAS fold ALEK_1150 PF00486 Transcriptional regulatory protein, C terminal ALEK_1150 PF00072 Response regulator receiver domain ALEK_1160 PF01266 FAD dependent oxidoreductase ALEK_1161 PF00464 Serine hydroxymethyltransferase ALEK_1162 PF02805 Metal binding domain of Ada ALEK_1162 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALEK_1162 PF12833 Helix-turn-helix domain ALEK_1162 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALEK_1164 PF01235 Sodium:alanine symporter family ALEK_1166 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1166 PF02743 Cache domain ALEK_1166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1167 PF00486 Transcriptional regulatory protein, C terminal ALEK_1167 PF00072 Response regulator receiver domain ALEK_1168 PF00206 Lyase ALEK_1168 PF10415 Fumarase C C-terminus ALEK_1170 PF00210 Ferritin-like domain ALEK_1171 PF07715 TonB-dependent Receptor Plug Domain ALEK_1171 PF00593 TonB dependent receptor ALEK_1172 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_1172 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1172 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1174 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1174 PF00563 EAL domain ALEK_1174 PF03707 Bacterial signalling protein N terminal repeat ALEK_1175 PF08448 PAS fold ALEK_1175 PF08447 PAS fold ALEK_1175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1176 PF01368 DHH family ALEK_1176 PF02833 DHHA2 domain ALEK_1178 PF08713 DNA alkylation repair enzyme ALEK_1179 PF04073 Aminoacyl-tRNA editing domain ALEK_1180 PF05088 Bacterial NAD-glutamate dehydrogenase ALEK_1182 PF00072 Response regulator receiver domain ALEK_1182 PF03861 ANTAR domain ALEK_1185 PF04403 Paraquat-inducible protein A ALEK_1186 PF02470 MlaD protein ALEK_1187 PF02028 BCCT, betaine/carnitine/choline family transporter ALEK_1188 PF00005 ABC transporter ALEK_1188 PF00571 CBS domain ALEK_1189 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_1190 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ALEK_1192 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ALEK_1195 PF08460 Bacterial SH3 domain ALEK_1195 PF01551 Peptidase family M23 ALEK_1197 PF13460 NAD(P)H-binding ALEK_1197 PF11066 Protein of unknown function (DUF2867) ALEK_1200 PF00183 Hsp90 protein ALEK_1205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALEK_1205 PF03466 LysR substrate binding domain ALEK_1209 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1209 PF00672 HAMP domain ALEK_1209 PF02203 Tar ligand binding domain homologue ALEK_1210 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ALEK_1210 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ALEK_1212 PF00672 HAMP domain ALEK_1212 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1212 PF02203 Tar ligand binding domain homologue ALEK_1218 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALEK_1218 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALEK_1221 PF00873 AcrB/AcrD/AcrF family ALEK_1222 PF00072 Response regulator receiver domain ALEK_1222 PF00486 Transcriptional regulatory protein, C terminal ALEK_1223 PF08448 PAS fold ALEK_1223 PF08447 PAS fold ALEK_1223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1226 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1226 PF00672 HAMP domain ALEK_1226 PF02203 Tar ligand binding domain homologue ALEK_1229 PF00072 Response regulator receiver domain ALEK_1229 PF00486 Transcriptional regulatory protein, C terminal ALEK_1231 PF06965 Na+/H+ antiporter 1 ALEK_1233 PF00999 Sodium/hydrogen exchanger family ALEK_1233 PF02254 TrkA-N domain ALEK_1234 PF00355 Rieske [2Fe-2S] domain ALEK_1234 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALEK_1236 PF18693 TRAM domain ALEK_1236 PF00919 Uncharacterized protein family UPF0004 ALEK_1236 PF04055 Radical SAM superfamily ALEK_1241 PF03641 Possible lysine decarboxylase ALEK_1242 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1242 PF08269 Cache domain ALEK_1243 PF01966 HD domain ALEK_1244 PF12833 Helix-turn-helix domain ALEK_1244 PF00072 Response regulator receiver domain ALEK_1245 PF03480 Bacterial extracellular solute-binding protein, family 7 ALEK_1247 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALEK_1249 PF03746 LamB/YcsF family ALEK_1251 PF02626 Carboxyltransferase domain, subdomain A and B ALEK_1253 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1253 PF08495 FIST N domain ALEK_1253 PF10442 FIST C domain ALEK_1253 PF00563 EAL domain ALEK_1256 PF02203 Tar ligand binding domain homologue ALEK_1256 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1256 PF00672 HAMP domain ALEK_1257 PF03880 DbpA RNA binding domain ALEK_1257 PF00270 DEAD/DEAH box helicase ALEK_1257 PF00271 Helicase conserved C-terminal domain ALEK_1258 PF03707 Bacterial signalling protein N terminal repeat ALEK_1258 PF00563 EAL domain ALEK_1258 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1259 PF05698 Bacterial trigger factor protein (TF) C-terminus ALEK_1261 PF00593 TonB dependent receptor ALEK_1261 PF07715 TonB-dependent Receptor Plug Domain ALEK_1262 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_1263 PF00005 ABC transporter ALEK_1268 PF00593 TonB dependent receptor ALEK_1268 PF07715 TonB-dependent Receptor Plug Domain ALEK_1269 PF00072 Response regulator receiver domain ALEK_1270 PF12282 Signal transduction histidine kinase ALEK_1270 PF07568 Histidine kinase ALEK_1270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1271 PF00925 GTP cyclohydrolase II ALEK_1273 PF00672 HAMP domain ALEK_1273 PF02203 Tar ligand binding domain homologue ALEK_1273 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1274 PF01243 Pyridoxamine 5'-phosphate oxidase ALEK_1274 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ALEK_1275 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1275 PF10442 FIST C domain ALEK_1275 PF08495 FIST N domain ALEK_1275 PF00563 EAL domain ALEK_1277 PF02562 PhoH-like protein ALEK_1277 PF13638 PIN domain ALEK_1278 PF08447 PAS fold ALEK_1278 PF08448 PAS fold ALEK_1278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1279 PF00072 Response regulator receiver domain ALEK_1281 PF08495 FIST N domain ALEK_1281 PF00563 EAL domain ALEK_1281 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1281 PF10442 FIST C domain ALEK_1282 PF00486 Transcriptional regulatory protein, C terminal ALEK_1282 PF00072 Response regulator receiver domain ALEK_1283 PF13426 PAS domain ALEK_1283 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1283 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1283 PF00672 HAMP domain ALEK_1284 PF00132 Bacterial transferase hexapeptide (six repeats) ALEK_1285 PF01467 Cytidylyltransferase-like ALEK_1286 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1286 PF00072 Response regulator receiver domain ALEK_1287 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ALEK_1287 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ALEK_1289 PF08447 PAS fold ALEK_1289 PF08448 PAS fold ALEK_1289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1290 PF01627 Hpt domain ALEK_1290 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1290 PF00072 Response regulator receiver domain ALEK_1290 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALEK_1290 PF00672 HAMP domain ALEK_1290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1291 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1291 PF00072 Response regulator receiver domain ALEK_1291 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALEK_1291 PF00672 HAMP domain ALEK_1291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1291 PF01627 Hpt domain ALEK_1292 PF00072 Response regulator receiver domain ALEK_1300 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_1301 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_1303 PF08448 PAS fold ALEK_1303 PF08447 PAS fold ALEK_1303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1304 PF09105 Elongation factor SelB, winged helix ALEK_1304 PF03144 Elongation factor Tu domain 2 ALEK_1304 PF00009 Elongation factor Tu GTP binding domain ALEK_1304 PF09107 Elongation factor SelB, winged helix ALEK_1304 PF09106 Elongation factor SelB, winged helix ALEK_1305 PF03841 L-seryl-tRNA selenium transferase ALEK_1310 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_1310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1310 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1311 PF11849 Domain of unknown function (DUF3369) ALEK_1312 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1312 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_1312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1313 PF11849 Domain of unknown function (DUF3369) ALEK_1315 PF00005 ABC transporter ALEK_1316 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_1318 PF00072 Response regulator receiver domain ALEK_1318 PF00486 Transcriptional regulatory protein, C terminal ALEK_1319 PF00149 Calcineurin-like phosphoesterase ALEK_1320 PF00072 Response regulator receiver domain ALEK_1320 PF00158 Sigma-54 interaction domain ALEK_1321 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1321 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1327 PF13247 4Fe-4S dicluster domain ALEK_1329 PF02634 FdhD/NarQ family ALEK_1333 PF03453 MoeA N-terminal region (domain I and II) ALEK_1333 PF00994 Probable molybdopterin binding domain ALEK_1333 PF03454 MoeA C-terminal region (domain IV) ALEK_1334 PF12849 PBP superfamily domain ALEK_1335 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_1336 PF00005 ABC transporter ALEK_1337 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ ALEK_1338 PF04221 RelB antitoxin ALEK_1342 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ALEK_1346 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1346 PF08447 PAS fold ALEK_1346 PF08448 PAS fold ALEK_1347 PF00849 RNA pseudouridylate synthase ALEK_1349 PF03707 Bacterial signalling protein N terminal repeat ALEK_1349 PF00563 EAL domain ALEK_1349 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1350 PF02683 Cytochrome C biogenesis protein transmembrane region ALEK_1350 PF11412 Disulphide bond corrector protein DsbC ALEK_1350 PF13098 Thioredoxin-like domain ALEK_1363 PF00392 Bacterial regulatory proteins, gntR family ALEK_1363 PF00155 Aminotransferase class I and II ALEK_1370 PF01042 Endoribonuclease L-PSP ALEK_1371 PF01266 FAD dependent oxidoreductase ALEK_1372 PF01235 Sodium:alanine symporter family ALEK_1373 PF00842 Alanine racemase, C-terminal domain ALEK_1373 PF01168 Alanine racemase, N-terminal domain ALEK_1374 PF01810 LysE type translocator ALEK_1375 PF12833 Helix-turn-helix domain ALEK_1376 PF00682 HMGL-like ALEK_1376 PF07836 DmpG-like communication domain ALEK_1379 PF00072 Response regulator receiver domain ALEK_1381 PF00075 RNase H ALEK_1384 PF01553 Acyltransferase ALEK_1385 PF18030 RimK PreATP-grasp domain ALEK_1385 PF08443 RimK-like ATP-grasp domain ALEK_1386 PF00313 'Cold-shock' DNA-binding domain ALEK_1388 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALEK_1388 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALEK_1394 PF00258 Flavodoxin ALEK_1395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1395 PF00072 Response regulator receiver domain ALEK_1396 PF01339 CheB methylesterase ALEK_1396 PF00072 Response regulator receiver domain ALEK_1398 PF01739 CheR methyltransferase, SAM binding domain ALEK_1398 PF03705 CheR methyltransferase, all-alpha domain ALEK_1399 PF00072 Response regulator receiver domain ALEK_1399 PF01584 CheW-like domain ALEK_1400 PF01584 CheW-like domain ALEK_1401 PF02203 Tar ligand binding domain homologue ALEK_1401 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1401 PF00672 HAMP domain ALEK_1402 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1402 PF08447 PAS fold ALEK_1403 PF07194 P2 response regulator binding domain ALEK_1403 PF01627 Hpt domain ALEK_1403 PF02895 Signal transducing histidine kinase, homodimeric domain ALEK_1403 PF01584 CheW-like domain ALEK_1403 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1405 PF00072 Response regulator receiver domain ALEK_1406 PF00486 Transcriptional regulatory protein, C terminal ALEK_1406 PF00072 Response regulator receiver domain ALEK_1408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1408 PF08447 PAS fold ALEK_1408 PF08448 PAS fold ALEK_1409 PF00072 Response regulator receiver domain ALEK_1410 PF00563 EAL domain ALEK_1410 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1410 PF10442 FIST C domain ALEK_1410 PF08495 FIST N domain ALEK_1413 PF02954 Bacterial regulatory protein, Fis family ALEK_1413 PF00072 Response regulator receiver domain ALEK_1413 PF00158 Sigma-54 interaction domain ALEK_1422 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1424 PF00691 OmpA family ALEK_1425 PF01965 DJ-1/PfpI family ALEK_1426 PF01614 Bacterial transcriptional regulator ALEK_1426 PF09339 IclR helix-turn-helix domain ALEK_1429 PF03737 Aldolase/RraA ALEK_1433 PF02600 Disulfide bond formation protein DsbB ALEK_1434 PF06965 Na+/H+ antiporter 1 ALEK_1434 PF13462 Thioredoxin ALEK_1439 PF00155 Aminotransferase class I and II ALEK_1441 PF13419 Haloacid dehalogenase-like hydrolase ALEK_1443 PF08448 PAS fold ALEK_1443 PF08447 PAS fold ALEK_1443 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1446 PF04333 MlaA lipoprotein ALEK_1447 PF01551 Peptidase family M23 ALEK_1448 PF13654 AAA domain ALEK_1448 PF05362 Lon protease (S16) C-terminal proteolytic domain ALEK_1449 PF00206 Lyase ALEK_1449 PF10415 Fumarase C C-terminus ALEK_1450 PF01709 Transcriptional regulator ALEK_1459 PF02424 ApbE family ALEK_1460 PF01435 Peptidase family M48 ALEK_1460 PF13181 Tetratricopeptide repeat ALEK_1462 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALEK_1462 PF02770 Acyl-CoA dehydrogenase, middle domain ALEK_1462 PF09317 Domain of unknown function (DUF1974) ALEK_1462 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALEK_1463 PF00378 Enoyl-CoA hydratase/isomerase ALEK_1463 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALEK_1463 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALEK_1464 PF02803 Thiolase, C-terminal domain ALEK_1464 PF00108 Thiolase, N-terminal domain ALEK_1465 PF00501 AMP-binding enzyme ALEK_1466 PF00892 EamA-like transporter family ALEK_1468 PF00588 SpoU rRNA Methylase family ALEK_1468 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALEK_1469 PF01327 Polypeptide deformylase ALEK_1470 PF10415 Fumarase C C-terminus ALEK_1470 PF00206 Lyase ALEK_1473 PF00171 Aldehyde dehydrogenase family ALEK_1478 PF00330 Aconitase family (aconitate hydratase) ALEK_1478 PF11791 Aconitate B N-terminal domain ALEK_1478 PF06434 Aconitate hydratase 2 N-terminus ALEK_1480 PF00849 RNA pseudouridylate synthase ALEK_1483 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALEK_1483 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ALEK_1485 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALEK_1485 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ALEK_1485 PF10518 TAT (twin-arginine translocation) pathway signal sequence ALEK_1486 PF00374 Nickel-dependent hydrogenase ALEK_1487 PF01292 Prokaryotic cytochrome b561 ALEK_1488 PF01750 Hydrogenase maturation protease ALEK_1492 PF14864 Alkyl sulfatase C-terminal ALEK_1492 PF00753 Metallo-beta-lactamase superfamily ALEK_1492 PF14863 Alkyl sulfatase dimerisation ALEK_1493 PF10518 TAT (twin-arginine translocation) pathway signal sequence ALEK_1493 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ALEK_1493 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALEK_1494 PF00374 Nickel-dependent hydrogenase ALEK_1495 PF01292 Prokaryotic cytochrome b561 ALEK_1496 PF01750 Hydrogenase maturation protease ALEK_1498 PF00708 Acylphosphatase ALEK_1498 PF17788 HypF Kae1-like domain ALEK_1498 PF01300 Telomere recombination ALEK_1498 PF07503 HypF finger ALEK_1500 PF00881 Nitroreductase family ALEK_1507 PF00209 Sodium:neurotransmitter symporter family ALEK_1508 PF03776 Septum formation topological specificity factor MinE ALEK_1509 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALEK_1510 PF03775 Septum formation inhibitor MinC, C-terminal domain ALEK_1511 PF00271 Helicase conserved C-terminal domain ALEK_1511 PF00270 DEAD/DEAH box helicase ALEK_1514 PF03150 Di-haem cytochrome c peroxidase ALEK_1514 PF00034 Cytochrome c ALEK_1515 PF00106 short chain dehydrogenase ALEK_1517 PF00106 short chain dehydrogenase ALEK_1519 PF12823 Domain of unknown function (DUF3817) ALEK_1521 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_1521 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1521 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1524 PF01625 Peptide methionine sulfoxide reductase ALEK_1529 PF02203 Tar ligand binding domain homologue ALEK_1529 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1529 PF00672 HAMP domain ALEK_1530 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALEK_1531 PF01455 HupF/HypC family ALEK_1532 PF01924 Hydrogenase formation hypA family ALEK_1533 PF02769 AIR synthase related protein, C-terminal domain ALEK_1533 PF00586 AIR synthase related protein, N-terminal domain ALEK_1534 PF00551 Formyl transferase ALEK_1534 PF02911 Formyl transferase, C-terminal domain ALEK_1534 PF00378 Enoyl-CoA hydratase/isomerase ALEK_1535 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ALEK_1539 PF02653 Branched-chain amino acid transport system / permease component ALEK_1540 PF02653 Branched-chain amino acid transport system / permease component ALEK_1540 PF11862 Domain of unknown function (DUF3382) ALEK_1541 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALEK_1541 PF00005 ABC transporter ALEK_1542 PF00005 ABC transporter ALEK_1543 PF01914 MarC family integral membrane protein ALEK_1548 PF00270 DEAD/DEAH box helicase ALEK_1548 PF17764 3′ DNA-binding domain (3′BD) ALEK_1548 PF00271 Helicase conserved C-terminal domain ALEK_1548 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ALEK_1548 PF18074 Primosomal protein N C-terminal domain ALEK_1550 PF01145 SPFH domain / Band 7 family ALEK_1550 PF16200 C-terminal region of band_7 ALEK_1551 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ALEK_1551 PF14602 Hexapeptide repeat of succinyl-transferase ALEK_1553 PF16326 ABC transporter C-terminal domain ALEK_1553 PF12848 ABC transporter ALEK_1553 PF00005 ABC transporter ALEK_1555 PF00893 Small Multidrug Resistance protein ALEK_1558 PF01184 GPR1/FUN34/yaaH family ALEK_1561 PF00005 ABC transporter ALEK_1562 PF02390 Putative methyltransferase ALEK_1564 PF00849 RNA pseudouridylate synthase ALEK_1564 PF01479 S4 domain ALEK_1565 PF01098 Cell cycle protein ALEK_1566 PF00491 Arginase family ALEK_1570 PF00202 Aminotransferase class-III ALEK_1571 PF06865 Pyrimidine/purine nucleoside phosphorylase ALEK_1575 PF00140 Sigma-70 factor, region 1.2 ALEK_1575 PF04542 Sigma-70 region 2 ALEK_1575 PF04539 Sigma-70 region 3 ALEK_1575 PF04545 Sigma-70, region 4 ALEK_1576 PF00694 Aconitase C-terminal domain ALEK_1577 PF00180 Isocitrate/isopropylmalate dehydrogenase ALEK_1580 PF00444 Ribosomal protein L36 ALEK_1581 PF00416 Ribosomal protein S13/S18 ALEK_1582 PF00411 Ribosomal protein S11 ALEK_1583 PF01479 S4 domain ALEK_1583 PF00163 Ribosomal protein S4/S9 N-terminal domain ALEK_1584 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ALEK_1584 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ALEK_1584 PF01000 RNA polymerase Rpb3/RpoA insert domain ALEK_1585 PF01196 Ribosomal protein L17 ALEK_1586 PF01425 Amidase ALEK_1587 PF00571 CBS domain ALEK_1587 PF00478 IMP dehydrogenase / GMP reductase domain ALEK_1601 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALEK_1602 PF03641 Possible lysine decarboxylase ALEK_1605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALEK_1607 PF04143 Sulphur transport ALEK_1610 PF01810 LysE type translocator ALEK_1611 PF01810 LysE type translocator ALEK_1614 PF07660 Secretin and TonB N terminus short domain ALEK_1614 PF07715 TonB-dependent Receptor Plug Domain ALEK_1614 PF00593 TonB dependent receptor ALEK_1618 PF00962 Adenosine/AMP deaminase ALEK_1620 PF00561 alpha/beta hydrolase fold ALEK_1622 PF00899 ThiF family ALEK_1623 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ALEK_1623 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALEK_1623 PF02142 MGS-like domain ALEK_1628 PF03412 Peptidase C39 family ALEK_1628 PF00664 ABC transporter transmembrane region ALEK_1628 PF00005 ABC transporter ALEK_1638 PF01761 3-dehydroquinate synthase ALEK_1640 PF04055 Radical SAM superfamily ALEK_1640 PF00919 Uncharacterized protein family UPF0004 ALEK_1641 PF06480 FtsH Extracellular ALEK_1641 PF17862 AAA+ lid domain ALEK_1641 PF00004 ATPase family associated with various cellular activities (AAA) ALEK_1641 PF01434 Peptidase family M41 ALEK_1643 PF00994 Probable molybdopterin binding domain ALEK_1644 PF00939 Sodium:sulfate symporter transmembrane region ALEK_1645 PF00488 MutS domain V ALEK_1645 PF01713 Smr domain ALEK_1649 PF01546 Peptidase family M20/M25/M40 ALEK_1649 PF07687 Peptidase dimerisation domain ALEK_1652 PF00583 Acetyltransferase (GNAT) family ALEK_1653 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ALEK_1656 PF12833 Helix-turn-helix domain ALEK_1656 PF02311 AraC-like ligand binding domain ALEK_1658 PF08274 PhnA Zinc-Ribbon ALEK_1658 PF03831 PhnA domain ALEK_1660 PF00005 ABC transporter ALEK_1662 PF02311 AraC-like ligand binding domain ALEK_1662 PF12833 Helix-turn-helix domain ALEK_1664 PF12833 Helix-turn-helix domain ALEK_1665 PF01161 Phosphatidylethanolamine-binding protein ALEK_1669 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1669 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1669 PF01627 Hpt domain ALEK_1669 PF00072 Response regulator receiver domain ALEK_1669 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALEK_1669 PF00672 HAMP domain ALEK_1671 PF01177 Asp/Glu/Hydantoin racemase ALEK_1672 PF03466 LysR substrate binding domain ALEK_1672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALEK_1673 PF03601 Conserved hypothetical protein 698 ALEK_1676 PF01638 HxlR-like helix-turn-helix ALEK_1677 PF02525 Flavodoxin-like fold ALEK_1679 PF00881 Nitroreductase family ALEK_1680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1680 PF08448 PAS fold ALEK_1680 PF08447 PAS fold ALEK_1681 PF00196 Bacterial regulatory proteins, luxR family ALEK_1681 PF00072 Response regulator receiver domain ALEK_1684 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1684 PF08447 PAS fold ALEK_1685 PF00005 ABC transporter ALEK_1685 PF08402 TOBE domain ALEK_1686 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1686 PF08447 PAS fold ALEK_1686 PF08448 PAS fold ALEK_1689 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_1692 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALEK_1692 PF03459 TOBE domain ALEK_1695 PF00072 Response regulator receiver domain ALEK_1695 PF00486 Transcriptional regulatory protein, C terminal ALEK_1696 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1696 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1696 PF18719 ArlS sensor domain ALEK_1697 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALEK_1698 PF00491 Arginase family ALEK_1700 PF02926 THUMP domain ALEK_1700 PF02568 Thiamine biosynthesis protein (ThiI) ALEK_1702 PF00072 Response regulator receiver domain ALEK_1702 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1703 PF01739 CheR methyltransferase, SAM binding domain ALEK_1703 PF03705 CheR methyltransferase, all-alpha domain ALEK_1704 PF09308 LuxQ, periplasmic ALEK_1704 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1704 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1704 PF00072 Response regulator receiver domain ALEK_1705 PF12848 ABC transporter ALEK_1705 PF00005 ABC transporter ALEK_1706 PF03061 Thioesterase superfamily ALEK_1708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1708 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1708 PF01627 Hpt domain ALEK_1708 PF00072 Response regulator receiver domain ALEK_1708 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALEK_1708 PF00672 HAMP domain ALEK_1709 PF00533 BRCA1 C Terminus (BRCT) domain ALEK_1709 PF01653 NAD-dependent DNA ligase adenylation domain ALEK_1709 PF03120 NAD-dependent DNA ligase OB-fold domain ALEK_1709 PF12826 Helix-hairpin-helix motif ALEK_1711 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1711 PF00072 Response regulator receiver domain ALEK_1711 PF09308 LuxQ, periplasmic ALEK_1711 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1712 PF08448 PAS fold ALEK_1712 PF08447 PAS fold ALEK_1712 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1713 PF00072 Response regulator receiver domain ALEK_1713 PF00486 Transcriptional regulatory protein, C terminal ALEK_1714 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1714 PF08447 PAS fold ALEK_1714 PF08448 PAS fold ALEK_1719 PF01546 Peptidase family M20/M25/M40 ALEK_1719 PF07687 Peptidase dimerisation domain ALEK_1720 PF01966 HD domain ALEK_1722 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALEK_1728 PF00072 Response regulator receiver domain ALEK_1728 PF00486 Transcriptional regulatory protein, C terminal ALEK_1729 PF08448 PAS fold ALEK_1729 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1729 PF00072 Response regulator receiver domain ALEK_1729 PF13426 PAS domain ALEK_1729 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1732 PF00106 short chain dehydrogenase ALEK_1733 PF01578 Cytochrome C assembly protein ALEK_1733 PF05140 ResB-like family ALEK_1734 PF08003 Protein of unknown function (DUF1698) ALEK_1735 PF00563 EAL domain ALEK_1735 PF00360 Phytochrome region ALEK_1735 PF01590 GAF domain ALEK_1735 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1736 PF17158 Membrane-associated sensor, integral membrane domain ALEK_1736 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1737 PF00753 Metallo-beta-lactamase superfamily ALEK_1739 PF07702 UTRA domain ALEK_1739 PF00392 Bacterial regulatory proteins, gntR family ALEK_1740 PF00005 ABC transporter ALEK_1742 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_1745 PF05861 Bacterial phosphonate metabolism protein (PhnI) ALEK_1746 PF06007 Phosphonate metabolism protein PhnJ ALEK_1747 PF00005 ABC transporter ALEK_1748 PF00005 ABC transporter ALEK_1749 PF07969 Amidohydrolase family ALEK_1750 PF00132 Bacterial transferase hexapeptide (six repeats) ALEK_1751 PF02203 Tar ligand binding domain homologue ALEK_1751 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1751 PF00672 HAMP domain ALEK_1752 PF02885 Glycosyl transferase family, helical bundle domain ALEK_1752 PF00625 Guanylate kinase ALEK_1752 PF00591 Glycosyl transferase family, a/b domain ALEK_1752 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ALEK_1755 PF03109 ABC1 family ALEK_1758 PF08212 Lipocalin-like domain ALEK_1763 PF01593 Flavin containing amine oxidoreductase ALEK_1764 PF08212 Lipocalin-like domain ALEK_1767 PF00106 short chain dehydrogenase ALEK_1770 PF00529 HlyD membrane-fusion protein of T1SS ALEK_1771 PF00664 ABC transporter transmembrane region ALEK_1771 PF00005 ABC transporter ALEK_1771 PF03412 Peptidase C39 family ALEK_1775 PF00291 Pyridoxal-phosphate dependent enzyme ALEK_1776 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1776 PF00989 PAS fold ALEK_1776 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1776 PF08447 PAS fold ALEK_1777 PF00226 DnaJ domain ALEK_1777 PF01556 DnaJ C terminal domain ALEK_1777 PF00684 DnaJ central domain ALEK_1778 PF02132 RecR protein ALEK_1778 PF13662 Toprim domain ALEK_1779 PF08447 PAS fold ALEK_1779 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1780 PF00672 HAMP domain ALEK_1780 PF02203 Tar ligand binding domain homologue ALEK_1783 PF00132 Bacterial transferase hexapeptide (six repeats) ALEK_1786 PF18030 RimK PreATP-grasp domain ALEK_1786 PF08443 RimK-like ATP-grasp domain ALEK_1788 PF00764 Arginosuccinate synthase ALEK_1790 PF02885 Glycosyl transferase family, helical bundle domain ALEK_1790 PF00591 Glycosyl transferase family, a/b domain ALEK_1791 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ALEK_1792 PF00005 ABC transporter ALEK_1792 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALEK_1793 PF08448 PAS fold ALEK_1793 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1794 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1794 PF08495 FIST N domain ALEK_1794 PF00563 EAL domain ALEK_1794 PF10442 FIST C domain ALEK_1795 PF02348 Cytidylyltransferase ALEK_1796 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ALEK_1796 PF00476 DNA polymerase family A ALEK_1796 PF01367 5'-3' exonuclease, C-terminal SAM fold ALEK_1796 PF01612 3'-5' exonuclease ALEK_1800 PF01790 Prolipoprotein diacylglyceryl transferase ALEK_1801 PF02754 Cysteine-rich domain ALEK_1801 PF02665 Nitrate reductase gamma subunit ALEK_1801 PF13183 4Fe-4S dicluster domain ALEK_1802 PF06969 HemN C-terminal domain ALEK_1802 PF04055 Radical SAM superfamily ALEK_1803 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALEK_1803 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALEK_1804 PF00317 Ribonucleotide reductase, all-alpha domain ALEK_1804 PF03477 ATP cone domain ALEK_1804 PF02867 Ribonucleotide reductase, barrel domain ALEK_1807 PF00072 Response regulator receiver domain ALEK_1807 PF00486 Transcriptional regulatory protein, C terminal ALEK_1808 PF08447 PAS fold ALEK_1808 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1809 PF00490 Delta-aminolevulinic acid dehydratase ALEK_1810 PF00925 GTP cyclohydrolase II ALEK_1811 PF02527 rRNA small subunit methyltransferase G ALEK_1816 PF02092 Glycyl-tRNA synthetase beta subunit ALEK_1817 PF12833 Helix-turn-helix domain ALEK_1818 PF01810 LysE type translocator ALEK_1825 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ALEK_1825 PF00925 GTP cyclohydrolase II ALEK_1827 PF01293 Phosphoenolpyruvate carboxykinase ALEK_1828 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit ALEK_1833 PF09334 tRNA synthetases class I (M) ALEK_1833 PF01588 Putative tRNA binding domain ALEK_1833 PF00133 tRNA synthetases class I (I, L, M and V) ALEK_1835 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ALEK_1837 PF04231 Endonuclease I ALEK_1841 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALEK_1842 PF05193 Peptidase M16 inactive domain ALEK_1843 PF04055 Radical SAM superfamily ALEK_1844 PF01103 Surface antigen ALEK_1844 PF07244 Surface antigen variable number repeat ALEK_1846 PF00809 Pterin binding enzyme ALEK_1849 PF13840 ACT domain ALEK_1849 PF00696 Amino acid kinase family ALEK_1849 PF01842 ACT domain ALEK_1850 PF00293 NUDIX domain ALEK_1851 PF04055 Radical SAM superfamily ALEK_1851 PF06969 HemN C-terminal domain ALEK_1852 PF05175 Methyltransferase small domain ALEK_1852 PF17827 PrmC N-terminal domain ALEK_1853 PF01432 Peptidase family M3 ALEK_1856 PF00589 Phage integrase family ALEK_1856 PF18644 Phage integrase SAM-like domain ALEK_1857 PF00072 Response regulator receiver domain ALEK_1857 PF01339 CheB methylesterase ALEK_1858 PF03975 CheD chemotactic sensory transduction ALEK_1859 PF01739 CheR methyltransferase, SAM binding domain ALEK_1859 PF03705 CheR methyltransferase, all-alpha domain ALEK_1860 PF02895 Signal transducing histidine kinase, homodimeric domain ALEK_1860 PF09078 CheY binding ALEK_1860 PF01584 CheW-like domain ALEK_1860 PF01627 Hpt domain ALEK_1860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1861 PF00072 Response regulator receiver domain ALEK_1862 PF03725 3' exoribonuclease family, domain 2 ALEK_1862 PF00575 S1 RNA binding domain ALEK_1862 PF00013 KH domain ALEK_1862 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ALEK_1862 PF01138 3' exoribonuclease family, domain 1 ALEK_1864 PF04453 LPS transport system D ALEK_1864 PF03968 OstA-like protein ALEK_1866 PF02844 Phosphoribosylglycinamide synthetase, N domain ALEK_1866 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ALEK_1866 PF02843 Phosphoribosylglycinamide synthetase, C domain ALEK_1868 PF01740 STAS domain ALEK_1868 PF00916 Sulfate permease family ALEK_1869 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ALEK_1869 PF01926 50S ribosome-binding GTPase ALEK_1870 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ALEK_1870 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ALEK_1871 PF17854 FtsK alpha domain ALEK_1871 PF09397 Ftsk gamma domain ALEK_1871 PF01580 FtsK/SpoIIIE family ALEK_1872 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ALEK_1872 PF00132 Bacterial transferase hexapeptide (six repeats) ALEK_1873 PF10369 Small subunit of acetolactate synthase ALEK_1874 PF00205 Thiamine pyrophosphate enzyme, central domain ALEK_1874 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALEK_1874 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALEK_1876 PF02541 Ppx/GppA phosphatase family ALEK_1877 PF01066 CDP-alcohol phosphatidyltransferase ALEK_1878 PF00563 EAL domain ALEK_1878 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1878 PF00360 Phytochrome region ALEK_1878 PF01590 GAF domain ALEK_1880 PF00916 Sulfate permease family ALEK_1880 PF01740 STAS domain ALEK_1883 PF00085 Thioredoxin ALEK_1885 PF01171 PP-loop family ALEK_1888 PF03454 MoeA C-terminal region (domain IV) ALEK_1888 PF03453 MoeA N-terminal region (domain I and II) ALEK_1888 PF00994 Probable molybdopterin binding domain ALEK_1889 PF00360 Phytochrome region ALEK_1889 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1889 PF01590 GAF domain ALEK_1889 PF00563 EAL domain ALEK_1891 PF02646 RmuC family ALEK_1892 PF01435 Peptidase family M48 ALEK_1892 PF16491 CAAX prenyl protease N-terminal, five membrane helices ALEK_1893 PF05230 MASE2 domain ALEK_1893 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1895 PF03061 Thioesterase superfamily ALEK_1901 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALEK_1902 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_1903 PF12911 N-terminal TM domain of oligopeptide transport permease C ALEK_1903 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_1904 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALEK_1904 PF00005 ABC transporter ALEK_1905 PF01554 MatE ALEK_1907 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1907 PF08447 PAS fold ALEK_1908 PF00672 HAMP domain ALEK_1908 PF02203 Tar ligand binding domain homologue ALEK_1908 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_1909 PF00248 Aldo/keto reductase family ALEK_1912 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALEK_1915 PF07685 CobB/CobQ-like glutamine amidotransferase domain ALEK_1915 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALEK_1918 PF01888 CbiD ALEK_1919 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALEK_1920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALEK_1921 PF11761 Cobalamin biosynthesis central region ALEK_1921 PF11760 Cobalamin synthesis G N-terminal ALEK_1921 PF01890 Cobalamin synthesis G C-terminus ALEK_1922 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALEK_1922 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALEK_1925 PF12852 Cupin ALEK_1925 PF12833 Helix-turn-helix domain ALEK_1927 PF01209 ubiE/COQ5 methyltransferase family ALEK_1929 PF00563 EAL domain ALEK_1929 PF03707 Bacterial signalling protein N terminal repeat ALEK_1929 PF00990 Diguanylate cyclase, GGDEF domain ALEK_1932 PF12833 Helix-turn-helix domain ALEK_1933 PF08241 Methyltransferase domain ALEK_1934 PF01032 FecCD transport family ALEK_1935 PF00005 ABC transporter ALEK_1937 PF07715 TonB-dependent Receptor Plug Domain ALEK_1937 PF00593 TonB dependent receptor ALEK_1940 PF13419 Haloacid dehalogenase-like hydrolase ALEK_1942 PF01145 SPFH domain / Band 7 family ALEK_1942 PF16200 C-terminal region of band_7 ALEK_1944 PF00486 Transcriptional regulatory protein, C terminal ALEK_1944 PF00072 Response regulator receiver domain ALEK_1945 PF00588 SpoU rRNA Methylase family ALEK_1946 PF00551 Formyl transferase ALEK_1946 PF01842 ACT domain ALEK_1947 PF00224 Pyruvate kinase, barrel domain ALEK_1947 PF00391 PEP-utilising enzyme, mobile domain ALEK_1947 PF02887 Pyruvate kinase, alpha/beta domain ALEK_1948 PF00171 Aldehyde dehydrogenase family ALEK_1949 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ALEK_1949 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ALEK_1952 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_1954 PF08402 TOBE domain ALEK_1954 PF00005 ABC transporter ALEK_1955 PF17912 MalK OB fold domain ALEK_1955 PF00005 ABC transporter ALEK_1956 PF01266 FAD dependent oxidoreductase ALEK_1956 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ALEK_1957 PF00392 Bacterial regulatory proteins, gntR family ALEK_1957 PF07702 UTRA domain ALEK_1958 PF00392 Bacterial regulatory proteins, gntR family ALEK_1958 PF07702 UTRA domain ALEK_1959 PF01515 Phosphate acetyl/butaryl transferase ALEK_1959 PF03949 Malic enzyme, NAD binding domain ALEK_1959 PF00390 Malic enzyme, N-terminal domain ALEK_1960 PF00206 Lyase ALEK_1960 PF10415 Fumarase C C-terminus ALEK_1961 PF03737 Aldolase/RraA ALEK_1962 PF00512 His Kinase A (phospho-acceptor) domain ALEK_1962 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_1962 PF00989 PAS fold ALEK_1963 PF00486 Transcriptional regulatory protein, C terminal ALEK_1963 PF00072 Response regulator receiver domain ALEK_1964 PF00375 Sodium:dicarboxylate symporter family ALEK_1967 PF08501 Shikimate dehydrogenase substrate binding domain ALEK_1971 PF03313 Serine dehydratase alpha chain ALEK_1972 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALEK_1972 PF03466 LysR substrate binding domain ALEK_1974 PF00571 CBS domain ALEK_1974 PF03448 MgtE intracellular N domain ALEK_1974 PF01769 Divalent cation transporter ALEK_1977 PF03738 Glutathionylspermidine synthase preATP-grasp ALEK_1983 PF03275 UDP-galactopyranose mutase ALEK_1984 PF03239 Iron permease FTR1 family ALEK_1985 PF00491 Arginase family ALEK_1986 PF01979 Amidohydrolase family ALEK_1987 PF17391 Urocanase N-terminal domain ALEK_1987 PF17392 Urocanase C-terminal domain ALEK_1987 PF01175 Urocanase Rossmann-like domain ALEK_1988 PF00221 Aromatic amino acid lyase ALEK_1989 PF00392 Bacterial regulatory proteins, gntR family ALEK_1989 PF07702 UTRA domain ALEK_1994 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALEK_1996 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ALEK_1997 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALEK_1998 PF02540 NAD synthase ALEK_2002 PF00226 DnaJ domain ALEK_2002 PF05099 Tellurite resistance protein TerB ALEK_2003 PF02416 mttA/Hcf106 family ALEK_2004 PF00902 Sec-independent protein translocase protein (TatC) ALEK_2005 PF02547 Queuosine biosynthesis protein ALEK_2010 PF01467 Cytidylyltransferase-like ALEK_2011 PF00209 Sodium:neurotransmitter symporter family ALEK_2015 PF02595 Glycerate kinase family ALEK_2016 PF04134 Protein of unknown function, DUF393 ALEK_2018 PF13286 Phosphohydrolase-associated domain ALEK_2018 PF01966 HD domain ALEK_2019 PF00520 Ion transport protein ALEK_2019 PF00027 Cyclic nucleotide-binding domain ALEK_2023 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALEK_2025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2025 PF07568 Histidine kinase ALEK_2025 PF12282 Signal transduction histidine kinase ALEK_2026 PF00486 Transcriptional regulatory protein, C terminal ALEK_2026 PF00072 Response regulator receiver domain ALEK_2028 PF05971 RNA methyltransferase ALEK_2036 PF06906 Protein of unknown function (DUF1272) ALEK_2038 PF08239 Bacterial SH3 domain ALEK_2041 PF00072 Response regulator receiver domain ALEK_2041 PF00486 Transcriptional regulatory protein, C terminal ALEK_2042 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2042 PF00672 HAMP domain ALEK_2042 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2043 PF05970 PIF1-like helicase ALEK_2043 PF14493 Helix-turn-helix domain ALEK_2044 PF05987 Bacterial protein of unknown function (DUF898) ALEK_2045 PF01435 Peptidase family M48 ALEK_2048 PF01966 HD domain ALEK_2050 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2051 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_2051 PF08447 PAS fold ALEK_2055 PF00072 Response regulator receiver domain ALEK_2055 PF00990 Diguanylate cyclase, GGDEF domain ALEK_2057 PF03781 Sulfatase-modifying factor enzyme 1 ALEK_2057 PF12867 DinB superfamily ALEK_2060 PF03737 Aldolase/RraA ALEK_2061 PF12146 Serine aminopeptidase, S33 ALEK_2064 PF00990 Diguanylate cyclase, GGDEF domain ALEK_2065 PF02310 B12 binding domain ALEK_2066 PF06368 Methylaspartate mutase E chain (MutE) ALEK_2068 PF00501 AMP-binding enzyme ALEK_2068 PF13193 AMP-binding enzyme C-terminal domain ALEK_2070 PF00990 Diguanylate cyclase, GGDEF domain ALEK_2074 PF01063 Amino-transferase class IV ALEK_2076 PF00873 AcrB/AcrD/AcrF family ALEK_2078 PF01795 MraW methylase family ALEK_2080 PF00216 Bacterial DNA-binding protein ALEK_2082 PF00072 Response regulator receiver domain ALEK_2082 PF00990 Diguanylate cyclase, GGDEF domain ALEK_2083 PF00762 Ferrochelatase ALEK_2085 PF00072 Response regulator receiver domain ALEK_2085 PF04397 LytTr DNA-binding domain ALEK_2086 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2086 PF06580 Histidine kinase ALEK_2086 PF07694 5TMR of 5TMR-LYT ALEK_2086 PF13492 GAF domain ALEK_2087 PF01593 Flavin containing amine oxidoreductase ALEK_2089 PF08349 Protein of unknown function (DUF1722) ALEK_2090 PF00271 Helicase conserved C-terminal domain ALEK_2090 PF08482 ATP-dependent helicase C-terminal ALEK_2090 PF00270 DEAD/DEAH box helicase ALEK_2090 PF04408 Helicase associated domain (HA2) ALEK_2092 PF02690 Na+/Pi-cotransporter ALEK_2096 PF12833 Helix-turn-helix domain ALEK_2096 PF02311 AraC-like ligand binding domain ALEK_2098 PF00700 Bacterial flagellin C-terminal helical region ALEK_2098 PF00669 Bacterial flagellin N-terminal helical region ALEK_2098 PF07196 Flagellin hook IN motif ALEK_2098 PF07196 Flagellin hook IN motif ALEK_2098 PF00669 Bacterial flagellin N-terminal helical region ALEK_2098 PF00700 Bacterial flagellin C-terminal helical region ALEK_2101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2102 PF00072 Response regulator receiver domain ALEK_2102 PF00486 Transcriptional regulatory protein, C terminal ALEK_2107 PF02203 Tar ligand binding domain homologue ALEK_2107 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_2107 PF00672 HAMP domain ALEK_2108 PF00664 ABC transporter transmembrane region ALEK_2108 PF00005 ABC transporter ALEK_2110 PF01594 AI-2E family transporter ALEK_2113 PF01810 LysE type translocator ALEK_2115 PF03548 Outer membrane lipoprotein carrier protein LolA ALEK_2116 PF07516 SecA Wing and Scaffold domain ALEK_2116 PF01043 SecA preprotein cross-linking domain ALEK_2116 PF02810 SEC-C motif ALEK_2116 PF07517 SecA DEAD-like domain ALEK_2116 PF00271 Helicase conserved C-terminal domain ALEK_2117 PF02687 FtsX-like permease family ALEK_2117 PF12704 MacB-like periplasmic core domain ALEK_2118 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2118 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2118 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_2120 PF11849 Domain of unknown function (DUF3369) ALEK_2123 PF03971 Monomeric isocitrate dehydrogenase ALEK_2124 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ALEK_2124 PF00056 lactate/malate dehydrogenase, NAD binding domain ALEK_2126 PF01545 Cation efflux family ALEK_2129 PF01266 FAD dependent oxidoreductase ALEK_2129 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ALEK_2131 PF01556 DnaJ C terminal domain ALEK_2131 PF00226 DnaJ domain ALEK_2132 PF13411 MerR HTH family regulatory protein ALEK_2133 PF12327 FtsZ family, C-terminal domain ALEK_2133 PF00091 Tubulin/FtsZ family, GTPase domain ALEK_2134 PF02491 SHS2 domain inserted in FTSA ALEK_2136 PF14490 Helix-hairpin-helix containing domain ALEK_2136 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain ALEK_2136 PF13538 UvrD-like helicase C-terminal domain ALEK_2138 PF03960 ArsC family ALEK_2141 PF01435 Peptidase family M48 ALEK_2145 PF03717 Penicillin-binding Protein dimerisation domain ALEK_2145 PF00905 Penicillin binding protein transpeptidase domain ALEK_2147 PF07670 Nucleoside recognition ALEK_2148 PF00813 FliP family ALEK_2149 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALEK_2152 PF00873 AcrB/AcrD/AcrF family ALEK_2153 PF00873 AcrB/AcrD/AcrF family ALEK_2154 PF00486 Transcriptional regulatory protein, C terminal ALEK_2154 PF00072 Response regulator receiver domain ALEK_2155 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2155 PF13755 Sensor N-terminal transmembrane domain ALEK_2155 PF13756 Stimulus-sensing domain ALEK_2155 PF00672 HAMP domain ALEK_2155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2156 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALEK_2157 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_2158 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_2158 PF12911 N-terminal TM domain of oligopeptide transport permease C ALEK_2159 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALEK_2159 PF00005 ABC transporter ALEK_2160 PF00005 ABC transporter ALEK_2160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALEK_2165 PF01926 50S ribosome-binding GTPase ALEK_2169 PF00475 Imidazoleglycerol-phosphate dehydratase ALEK_2170 PF05036 Sporulation related domain ALEK_2170 PF03330 Lytic transglycolase ALEK_2171 PF01026 TatD related DNase ALEK_2173 PF10431 C-terminal, D2-small domain, of ClpB protein ALEK_2173 PF07724 AAA domain (Cdc48 subfamily) ALEK_2174 PF00227 Proteasome subunit ALEK_2175 PF03948 Ribosomal protein L9, C-terminal domain ALEK_2175 PF01281 Ribosomal protein L9, N-terminal domain ALEK_2177 PF00486 Transcriptional regulatory protein, C terminal ALEK_2177 PF00072 Response regulator receiver domain ALEK_2179 PF02796 Helix-turn-helix domain of resolvase ALEK_2179 PF00239 Resolvase, N terminal domain ALEK_2180 PF02441 Flavoprotein ALEK_2181 PF01467 Cytidylyltransferase-like ALEK_2182 PF02223 Thymidylate kinase ALEK_2183 PF03129 Anticodon binding domain ALEK_2183 PF13393 Histidyl-tRNA synthetase ALEK_2184 PF17810 Arginine decarboxylase helical bundle domain ALEK_2184 PF17944 Arginine decarboxylase C-terminal helical extension ALEK_2184 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALEK_2185 PF06426 Serine acetyltransferase, N-terminal ALEK_2185 PF00132 Bacterial transferase hexapeptide (six repeats) ALEK_2187 PF08447 PAS fold ALEK_2187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2187 PF08448 PAS fold ALEK_2188 PF00330 Aconitase family (aconitate hydratase) ALEK_2188 PF00694 Aconitase C-terminal domain ALEK_2192 PF00199 Catalase ALEK_2192 PF06628 Catalase-related immune-responsive ALEK_2193 PF17755 UvrA DNA-binding domain ALEK_2193 PF17760 UvrA interaction domain ALEK_2195 PF17151 Periplasmic sensor domain ALEK_2195 PF00990 Diguanylate cyclase, GGDEF domain ALEK_2197 PF01595 Cyclin M transmembrane N-terminal domain ALEK_2197 PF00571 CBS domain ALEK_2197 PF03471 Transporter associated domain ALEK_2198 PF00194 Eukaryotic-type carbonic anhydrase ALEK_2199 PF01243 Pyridoxamine 5'-phosphate oxidase ALEK_2202 PF01594 AI-2E family transporter ALEK_2206 PF01510 N-acetylmuramoyl-L-alanine amidase ALEK_2206 PF01471 Putative peptidoglycan binding domain ALEK_2208 PF08495 FIST N domain ALEK_2208 PF00990 Diguanylate cyclase, GGDEF domain ALEK_2208 PF00563 EAL domain ALEK_2208 PF10442 FIST C domain ALEK_2210 PF01152 Bacterial-like globin ALEK_2212 PF07690 Major Facilitator Superfamily ALEK_2213 PF00365 Phosphofructokinase ALEK_2214 PF00375 Sodium:dicarboxylate symporter family ALEK_2216 PF03449 Transcription elongation factor, N-terminal ALEK_2216 PF01272 Transcription elongation factor, GreA/GreB, C-term ALEK_2217 PF00990 Diguanylate cyclase, GGDEF domain ALEK_2218 PF08447 PAS fold ALEK_2218 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2218 PF08448 PAS fold ALEK_2219 PF08279 HTH domain ALEK_2219 PF00072 Response regulator receiver domain ALEK_2221 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALEK_2221 PF00403 Heavy-metal-associated domain ALEK_2221 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALEK_2222 PF01810 LysE type translocator ALEK_2223 PF02311 AraC-like ligand binding domain ALEK_2223 PF12833 Helix-turn-helix domain ALEK_2224 PF06445 GyrI-like small molecule binding domain ALEK_2224 PF12833 Helix-turn-helix domain ALEK_2225 PF00075 RNase H ALEK_2228 PF03749 Sugar fermentation stimulation protein RE domain ALEK_2228 PF17746 SfsA N-terminal OB domain ALEK_2231 PF02311 AraC-like ligand binding domain ALEK_2231 PF12833 Helix-turn-helix domain ALEK_2233 PF00571 CBS domain ALEK_2233 PF01595 Cyclin M transmembrane N-terminal domain ALEK_2234 PF00392 Bacterial regulatory proteins, gntR family ALEK_2234 PF07729 FCD domain ALEK_2237 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALEK_2238 PF01266 FAD dependent oxidoreductase ALEK_2240 PF04324 BFD-like [2Fe-2S] binding domain ALEK_2240 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALEK_2242 PF01042 Endoribonuclease L-PSP ALEK_2243 PF03458 UPF0126 domain ALEK_2244 PF00072 Response regulator receiver domain ALEK_2245 PF00072 Response regulator receiver domain ALEK_2245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2245 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2245 PF01627 Hpt domain ALEK_2245 PF00672 HAMP domain ALEK_2245 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALEK_2246 PF02027 RolB/RolC glucosidase family ALEK_2246 PF01593 Flavin containing amine oxidoreductase ALEK_2247 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2247 PF00989 PAS fold ALEK_2253 PF02082 Transcriptional regulator ALEK_2254 PF00034 Cytochrome c ALEK_2255 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALEK_2256 PF00092 von Willebrand factor type A domain ALEK_2257 PF07728 AAA domain (dynein-related subfamily) ALEK_2257 PF08406 CbbQ/NirQ/NorQ C-terminal ALEK_2258 PF00258 Flavodoxin ALEK_2260 PF07995 Glucose / Sorbosone dehydrogenase ALEK_2262 PF13193 AMP-binding enzyme C-terminal domain ALEK_2262 PF16177 Acetyl-coenzyme A synthetase N-terminus ALEK_2262 PF00501 AMP-binding enzyme ALEK_2268 PF00561 alpha/beta hydrolase fold ALEK_2269 PF08241 Methyltransferase domain ALEK_2270 PF12833 Helix-turn-helix domain ALEK_2270 PF06719 AraC-type transcriptional regulator N-terminus ALEK_2271 PF02525 Flavodoxin-like fold ALEK_2273 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALEK_2273 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALEK_2274 PF02074 Carboxypeptidase Taq (M32) metallopeptidase ALEK_2275 PF01177 Asp/Glu/Hydantoin racemase ALEK_2287 PF17287 POTRA domain ALEK_2287 PF08479 POTRA domain, ShlB-type ALEK_2287 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ALEK_2288 PF00486 Transcriptional regulatory protein, C terminal ALEK_2288 PF00072 Response regulator receiver domain ALEK_2289 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2289 PF00989 PAS fold ALEK_2290 PF00072 Response regulator receiver domain ALEK_2290 PF12833 Helix-turn-helix domain ALEK_2291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2291 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2295 PF00132 Bacterial transferase hexapeptide (six repeats) ALEK_2300 PF00301 Rubredoxin ALEK_2303 PF00027 Cyclic nucleotide-binding domain ALEK_2303 PF01734 Patatin-like phospholipase ALEK_2304 PF01479 S4 domain ALEK_2304 PF00849 RNA pseudouridylate synthase ALEK_2310 PF09055 Nickel-containing superoxide dismutase ALEK_2312 PF00226 DnaJ domain ALEK_2312 PF05099 Tellurite resistance protein TerB ALEK_2316 PF01042 Endoribonuclease L-PSP ALEK_2320 PF00117 Glutamine amidotransferase class-I ALEK_2320 PF02540 NAD synthase ALEK_2320 PF00958 GMP synthase C terminal domain ALEK_2322 PF03600 Citrate transporter ALEK_2323 PF02910 Fumarate reductase flavoprotein C-term ALEK_2323 PF00890 FAD binding domain ALEK_2326 PF01863 Protein of unknown function DUF45 ALEK_2327 PF00155 Aminotransferase class I and II ALEK_2328 PF16916 Dimerisation domain of Zinc Transporter ALEK_2328 PF01545 Cation efflux family ALEK_2329 PF00581 Rhodanese-like domain ALEK_2331 PF00211 Adenylate and Guanylate cyclase catalytic domain ALEK_2336 PF00072 Response regulator receiver domain ALEK_2336 PF00486 Transcriptional regulatory protein, C terminal ALEK_2337 PF00072 Response regulator receiver domain ALEK_2337 PF00486 Transcriptional regulatory protein, C terminal ALEK_2338 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2338 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2338 PF00989 PAS fold ALEK_2340 PF01740 STAS domain ALEK_2341 PF02397 Bacterial sugar transferase ALEK_2342 PF00534 Glycosyl transferases group 1 ALEK_2342 PF13439 Glycosyltransferase Family 4 ALEK_2344 PF00535 Glycosyl transferase family 2 ALEK_2347 PF13439 Glycosyltransferase Family 4 ALEK_2347 PF00534 Glycosyl transferases group 1 ALEK_2349 PF00483 Nucleotidyl transferase ALEK_2350 PF00483 Nucleotidyl transferase ALEK_2350 PF01050 Mannose-6-phosphate isomerase ALEK_2359 PF00132 Bacterial transferase hexapeptide (six repeats) ALEK_2366 PF09424 Yqey-like protein ALEK_2367 PF00990 Diguanylate cyclase, GGDEF domain ALEK_2370 PF01966 HD domain ALEK_2376 PF08240 Alcohol dehydrogenase GroES-like domain ALEK_2376 PF00107 Zinc-binding dehydrogenase ALEK_2378 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALEK_2380 PF03737 Aldolase/RraA ALEK_2381 PF00072 Response regulator receiver domain ALEK_2381 PF00486 Transcriptional regulatory protein, C terminal ALEK_2382 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_2382 PF00672 HAMP domain ALEK_2382 PF17200 Single Cache domain 2 ALEK_2385 PF03480 Bacterial extracellular solute-binding protein, family 7 ALEK_2387 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALEK_2391 PF00989 PAS fold ALEK_2391 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2391 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2391 PF00672 HAMP domain ALEK_2396 PF12706 Beta-lactamase superfamily domain ALEK_2397 PF00072 Response regulator receiver domain ALEK_2397 PF00486 Transcriptional regulatory protein, C terminal ALEK_2398 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2398 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2398 PF08521 Two-component sensor kinase N-terminal ALEK_2400 PF16326 ABC transporter C-terminal domain ALEK_2400 PF12848 ABC transporter ALEK_2400 PF00005 ABC transporter ALEK_2403 PF01209 ubiE/COQ5 methyltransferase family ALEK_2405 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ALEK_2405 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALEK_2406 PF03150 Di-haem cytochrome c peroxidase ALEK_2406 PF00034 Cytochrome c ALEK_2407 PF13426 PAS domain ALEK_2407 PF00072 Response regulator receiver domain ALEK_2407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2408 PF02567 Phenazine biosynthesis-like protein ALEK_2409 PF12833 Helix-turn-helix domain ALEK_2410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2410 PF08448 PAS fold ALEK_2410 PF08447 PAS fold ALEK_2411 PF02086 D12 class N6 adenine-specific DNA methyltransferase ALEK_2415 PF00881 Nitroreductase family ALEK_2417 PF00106 short chain dehydrogenase ALEK_2418 PF03553 Na+/H+ antiporter family ALEK_2420 PF08447 PAS fold ALEK_2420 PF08448 PAS fold ALEK_2420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2421 PF12833 Helix-turn-helix domain ALEK_2421 PF00072 Response regulator receiver domain ALEK_2423 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ALEK_2423 PF02321 Outer membrane efflux protein ALEK_2424 PF00529 HlyD membrane-fusion protein of T1SS ALEK_2424 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALEK_2425 PF11742 Protein of unknown function (DUF3302) ALEK_2427 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_2427 PF12911 N-terminal TM domain of oligopeptide transport permease C ALEK_2430 PF00013 KH domain ALEK_2430 PF01966 HD domain ALEK_2430 PF12072 Domain of unknown function (DUF3552) ALEK_2432 PF00578 AhpC/TSA family ALEK_2433 PF00448 SRP54-type protein, GTPase domain ALEK_2434 PF01810 LysE type translocator ALEK_2436 PF00486 Transcriptional regulatory protein, C terminal ALEK_2436 PF00072 Response regulator receiver domain ALEK_2437 PF18719 ArlS sensor domain ALEK_2437 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2438 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALEK_2439 PF05728 Uncharacterised protein family (UPF0227) ALEK_2441 PF18073 Rubredoxin metal binding domain ALEK_2443 PF02130 Uncharacterized protein family UPF0054 ALEK_2444 PF01699 Sodium/calcium exchanger protein ALEK_2446 PF02915 Rubrerythrin ALEK_2447 PF02915 Rubrerythrin ALEK_2449 PF03023 Lipid II flippase MurJ ALEK_2451 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALEK_2452 PF00510 Cytochrome c oxidase subunit III ALEK_2454 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ALEK_2454 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALEK_2455 PF01040 UbiA prenyltransferase family ALEK_2456 PF00005 ABC transporter ALEK_2456 PF00664 ABC transporter transmembrane region ALEK_2457 PF01180 Dihydroorotate dehydrogenase ALEK_2460 PF00701 Dihydrodipicolinate synthetase family ALEK_2462 PF01066 CDP-alcohol phosphatidyltransferase ALEK_2463 PF17820 PDZ domain ALEK_2463 PF02163 Peptidase family M50 ALEK_2464 PF01168 Alanine racemase, N-terminal domain ALEK_2465 PF01361 Tautomerase enzyme ALEK_2468 PF03466 LysR substrate binding domain ALEK_2468 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALEK_2469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2469 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2469 PF00989 PAS fold ALEK_2470 PF00218 Indole-3-glycerol phosphate synthase ALEK_2472 PF03692 Putative zinc- or iron-chelating domain ALEK_2473 PF05175 Methyltransferase small domain ALEK_2475 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ALEK_2475 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ALEK_2475 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALEK_2476 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALEK_2478 PF04607 Region found in RelA / SpoT proteins ALEK_2478 PF13291 ACT domain ALEK_2478 PF02824 TGS domain ALEK_2479 PF14579 Helix-hairpin-helix motif ALEK_2479 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALEK_2479 PF11490 DNA polymerase III polC-type N-terminus II ALEK_2479 PF14480 DNA polymerase III polC-type N-terminus I ALEK_2479 PF02811 PHP domain ALEK_2479 PF00929 Exonuclease ALEK_2479 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALEK_2480 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ALEK_2481 PF00834 Ribulose-phosphate 3 epimerase family ALEK_2482 PF02253 Phospholipase A1 ALEK_2484 PF00293 NUDIX domain ALEK_2485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2486 PF00486 Transcriptional regulatory protein, C terminal ALEK_2486 PF00072 Response regulator receiver domain ALEK_2488 PF04461 Protein of unknown function (DUF520) ALEK_2489 PF00860 Permease family ALEK_2493 PF04241 Protein of unknown function (DUF423) ALEK_2495 PF00156 Phosphoribosyl transferase domain ALEK_2496 PF00860 Permease family ALEK_2499 PF01883 Iron-sulfur cluster assembly protein ALEK_2500 PF00155 Aminotransferase class I and II ALEK_2501 PF00072 Response regulator receiver domain ALEK_2501 PF12833 Helix-turn-helix domain ALEK_2515 PF04055 Radical SAM superfamily ALEK_2516 PF01208 Uroporphyrinogen decarboxylase (URO-D) ALEK_2518 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALEK_2518 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALEK_2519 PF03989 DNA gyrase C-terminal domain, beta-propeller ALEK_2519 PF00521 DNA gyrase/topoisomerase IV, subunit A ALEK_2521 PF01960 ArgJ family ALEK_2522 PF07885 Ion channel ALEK_2522 PF02254 TrkA-N domain ALEK_2523 PF00830 Ribosomal L28 family ALEK_2527 PF01370 NAD dependent epimerase/dehydratase family ALEK_2528 PF00294 pfkB family carbohydrate kinase ALEK_2528 PF01467 Cytidylyltransferase-like ALEK_2529 PF13580 SIS domain ALEK_2530 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ALEK_2531 PF00534 Glycosyl transferases group 1 ALEK_2531 PF00862 Sucrose synthase ALEK_2533 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ALEK_2534 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ALEK_2535 PF00534 Glycosyl transferases group 1 ALEK_2535 PF13439 Glycosyltransferase Family 4 ALEK_2537 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALEK_2538 PF00132 Bacterial transferase hexapeptide (six repeats) ALEK_2539 PF05523 WxcM-like, C-terminal ALEK_2540 PF16363 GDP-mannose 4,6 dehydratase ALEK_2541 PF00483 Nucleotidyl transferase ALEK_2543 PF00535 Glycosyl transferase family 2 ALEK_2545 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ALEK_2547 PF12838 4Fe-4S dicluster domain ALEK_2548 PF00459 Inositol monophosphatase family ALEK_2549 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ALEK_2549 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALEK_2550 PF01493 GXGXG motif ALEK_2550 PF01645 Conserved region in glutamate synthase ALEK_2550 PF04898 Glutamate synthase central domain ALEK_2550 PF00310 Glutamine amidotransferases class-II ALEK_2551 PF03480 Bacterial extracellular solute-binding protein, family 7 ALEK_2552 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALEK_2553 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALEK_2555 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ALEK_2557 PF13472 GDSL-like Lipase/Acylhydrolase family ALEK_2558 PF00005 ABC transporter ALEK_2560 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALEK_2560 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALEK_2563 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALEK_2563 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ALEK_2565 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALEK_2583 PF12833 Helix-turn-helix domain ALEK_2584 PF08447 PAS fold ALEK_2584 PF08448 PAS fold ALEK_2584 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2585 PF00196 Bacterial regulatory proteins, luxR family ALEK_2585 PF00072 Response regulator receiver domain ALEK_2587 PF00082 Subtilase family ALEK_2593 PF13344 Haloacid dehalogenase-like hydrolase ALEK_2593 PF00293 NUDIX domain ALEK_2596 PF02743 Cache domain ALEK_2596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2596 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2597 PF02954 Bacterial regulatory protein, Fis family ALEK_2597 PF00072 Response regulator receiver domain ALEK_2597 PF00158 Sigma-54 interaction domain ALEK_2615 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ALEK_2616 PF01029 NusB family ALEK_2617 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALEK_2618 PF00793 DAHP synthetase I family ALEK_2621 PF01645 Conserved region in glutamate synthase ALEK_2623 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALEK_2629 PF00437 Type II/IV secretion system protein ALEK_2630 PF03958 Bacterial type II/III secretion system short domain ALEK_2630 PF00263 Bacterial type II and III secretion system protein ALEK_2638 PF08334 Type II secretion system (T2SS), protein G ALEK_2638 PF07963 Prokaryotic N-terminal methylation motif ALEK_2639 PF01205 Uncharacterized protein family UPF0029 ALEK_2639 PF09186 Domain of unknown function (DUF1949) ALEK_2640 PF01728 FtsJ-like methyltransferase ALEK_2640 PF01479 S4 domain ALEK_2642 PF13649 Methyltransferase domain ALEK_2643 PF00578 AhpC/TSA family ALEK_2645 PF01565 FAD binding domain ALEK_2645 PF02913 FAD linked oxidases, C-terminal domain ALEK_2654 PF01048 Phosphorylase superfamily ALEK_2655 PF00698 Acyl transferase domain ALEK_2656 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALEK_2659 PF04052 TolB amino-terminal domain ALEK_2661 PF02472 Biopolymer transport protein ExbD/TolR ALEK_2662 PF01618 MotA/TolQ/ExbB proton channel family ALEK_2663 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ALEK_2664 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALEK_2664 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALEK_2665 PF00231 ATP synthase ALEK_2666 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALEK_2666 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALEK_2666 PF00306 ATP synthase alpha/beta chain, C terminal domain ALEK_2667 PF00213 ATP synthase delta (OSCP) subunit ALEK_2668 PF00430 ATP synthase B/B' CF(0) ALEK_2670 PF02195 ParB-like nuclease domain ALEK_2670 PF17762 HTH domain found in ParB protein ALEK_2671 PF13614 AAA domain ALEK_2674 PF02911 Formyl transferase, C-terminal domain ALEK_2674 PF00551 Formyl transferase ALEK_2675 PF00696 Amino acid kinase family ALEK_2676 PF01018 GTP1/OBG ALEK_2676 PF01926 50S ribosome-binding GTPase ALEK_2677 PF01016 Ribosomal L27 protein ALEK_2678 PF00829 Ribosomal prokaryotic L21 protein ALEK_2679 PF01042 Endoribonuclease L-PSP ALEK_2680 PF01807 CHC2 zinc finger ALEK_2680 PF08275 DNA primase catalytic core, N-terminal domain ALEK_2680 PF13662 Toprim domain ALEK_2680 PF16730 DnaG-primase C-terminal, helicase-binding domain ALEK_2682 PF00035 Double-stranded RNA binding motif ALEK_2682 PF14622 Ribonuclease-III-like ALEK_2683 PF01264 Chorismate synthase ALEK_2684 PF01435 Peptidase family M48 ALEK_2685 PF00300 Histidine phosphatase superfamily (branch 1) ALEK_2688 PF01926 50S ribosome-binding GTPase ALEK_2688 PF10396 GTP-binding protein TrmE N-terminus ALEK_2688 PF12631 MnmE helical domain ALEK_2690 PF02096 60Kd inner membrane protein ALEK_2690 PF14849 YidC periplasmic domain ALEK_2691 PF01809 Putative membrane protein insertion efficiency factor ALEK_2692 PF00468 Ribosomal protein L34 ALEK_2693 PF08447 PAS fold ALEK_2693 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2693 PF08448 PAS fold ALEK_2694 PF10431 C-terminal, D2-small domain, of ClpB protein ALEK_2694 PF00004 ATPase family associated with various cellular activities (AAA) ALEK_2694 PF07724 AAA domain (Cdc48 subfamily) ALEK_2694 PF02861 Clp amino terminal domain, pathogenicity island component ALEK_2694 PF17871 AAA lid domain ALEK_2695 PF08447 PAS fold ALEK_2695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2695 PF08448 PAS fold ALEK_2697 PF08448 PAS fold ALEK_2697 PF08447 PAS fold ALEK_2697 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2698 PF01351 Ribonuclease HII ALEK_2701 PF01625 Peptide methionine sulfoxide reductase ALEK_2702 PF01641 SelR domain ALEK_2703 PF00072 Response regulator receiver domain ALEK_2704 PF00072 Response regulator receiver domain ALEK_2705 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2705 PF09308 LuxQ, periplasmic ALEK_2705 PF00072 Response regulator receiver domain ALEK_2705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2706 PF01645 Conserved region in glutamate synthase ALEK_2707 PF07681 DoxX ALEK_2708 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALEK_2710 PF07681 DoxX ALEK_2713 PF00202 Aminotransferase class-III ALEK_2714 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2714 PF08447 PAS fold ALEK_2714 PF08448 PAS fold ALEK_2719 PF02142 MGS-like domain ALEK_2719 PF01808 AICARFT/IMPCHase bienzyme ALEK_2722 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALEK_2722 PF18793 Nitrous oxide reductase propeller repeat 2 ALEK_2722 PF18764 Nitrous oxide reductase propeller repeat ALEK_2725 PF12838 4Fe-4S dicluster domain ALEK_2725 PF12800 4Fe-4S binding domain ALEK_2727 PF00034 Cytochrome c ALEK_2728 PF12801 4Fe-4S binding domain ALEK_2728 PF13237 4Fe-4S dicluster domain ALEK_2729 PF00005 ABC transporter ALEK_2731 PF02769 AIR synthase related protein, C-terminal domain ALEK_2731 PF00586 AIR synthase related protein, N-terminal domain ALEK_2731 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ALEK_2732 PF01551 Peptidase family M23 ALEK_2733 PF03448 MgtE intracellular N domain ALEK_2733 PF01769 Divalent cation transporter ALEK_2733 PF00571 CBS domain ALEK_2735 PF01227 GTP cyclohydrolase I ALEK_2737 PF00437 Type II/IV secretion system protein ALEK_2740 PF01926 50S ribosome-binding GTPase ALEK_2740 PF07650 KH domain ALEK_2741 PF13335 Magnesium chelatase, subunit ChlI C-terminal ALEK_2741 PF01078 Magnesium chelatase, subunit ChlI ALEK_2742 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_2742 PF02203 Tar ligand binding domain homologue ALEK_2742 PF00672 HAMP domain ALEK_2743 PF08447 PAS fold ALEK_2743 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_2745 PF01327 Polypeptide deformylase ALEK_2746 PF00574 Clp protease ALEK_2747 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALEK_2747 PF05698 Bacterial trigger factor protein (TF) C-terminus ALEK_2747 PF05697 Bacterial trigger factor protein (TF) ALEK_2748 PF00092 von Willebrand factor type A domain ALEK_2748 PF07584 Aerotolerance regulator N-terminal ALEK_2749 PF03976 Polyphosphate kinase 2 (PPK2) ALEK_2750 PF03976 Polyphosphate kinase 2 (PPK2) ALEK_2751 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALEK_2752 PF00301 Rubredoxin ALEK_2753 PF03435 Saccharopine dehydrogenase NADP binding domain ALEK_2753 PF16653 Saccharopine dehydrogenase C-terminal domain ALEK_2766 PF00672 HAMP domain ALEK_2766 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_2766 PF02203 Tar ligand binding domain homologue ALEK_2767 PF08447 PAS fold ALEK_2767 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_2768 PF00486 Transcriptional regulatory protein, C terminal ALEK_2768 PF00072 Response regulator receiver domain ALEK_2769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2769 PF08447 PAS fold ALEK_2769 PF08448 PAS fold ALEK_2775 PF00258 Flavodoxin ALEK_2776 PF01475 Ferric uptake regulator family ALEK_2786 PF07664 Ferrous iron transport protein B C terminus ALEK_2786 PF02421 Ferrous iron transport protein B ALEK_2786 PF07670 Nucleoside recognition ALEK_2787 PF00990 Diguanylate cyclase, GGDEF domain ALEK_2788 PF01475 Ferric uptake regulator family ALEK_2792 PF04376 Arginine-tRNA-protein transferase, N terminus ALEK_2792 PF04377 Arginine-tRNA-protein transferase, C terminus ALEK_2793 PF00290 Tryptophan synthase alpha chain ALEK_2794 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALEK_2794 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALEK_2794 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALEK_2794 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALEK_2795 PF02548 Ketopantoate hydroxymethyltransferase ALEK_2796 PF17864 RuvB AAA lid domain ALEK_2796 PF05491 RuvB C-terminal winged helix domain ALEK_2796 PF05496 Holliday junction DNA helicase RuvB P-loop domain ALEK_2797 PF01594 AI-2E family transporter ALEK_2800 PF09905 DNA-binding protein VF530 ALEK_2803 PF00072 Response regulator receiver domain ALEK_2803 PF00486 Transcriptional regulatory protein, C terminal ALEK_2804 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2806 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALEK_2808 PF00700 Bacterial flagellin C-terminal helical region ALEK_2808 PF00669 Bacterial flagellin N-terminal helical region ALEK_2809 PF17871 AAA lid domain ALEK_2809 PF10431 C-terminal, D2-small domain, of ClpB protein ALEK_2809 PF00004 ATPase family associated with various cellular activities (AAA) ALEK_2809 PF07724 AAA domain (Cdc48 subfamily) ALEK_2809 PF02861 Clp amino terminal domain, pathogenicity island component ALEK_2810 PF02617 ATP-dependent Clp protease adaptor protein ClpS ALEK_2813 PF13193 AMP-binding enzyme C-terminal domain ALEK_2813 PF00501 AMP-binding enzyme ALEK_2814 PF01575 MaoC like domain ALEK_2823 PF00672 HAMP domain ALEK_2823 PF02203 Tar ligand binding domain homologue ALEK_2823 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_2825 PF01613 Flavin reductase like domain ALEK_2826 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_2826 PF00512 His Kinase A (phospho-acceptor) domain ALEK_2826 PF00072 Response regulator receiver domain ALEK_2826 PF08448 PAS fold ALEK_2826 PF13426 PAS domain ALEK_2832 PF00771 FHIPEP family ALEK_2833 PF00700 Bacterial flagellin C-terminal helical region ALEK_2833 PF00669 Bacterial flagellin N-terminal helical region ALEK_2834 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALEK_2834 PF18269 T3SS EscN ATPase C-terminal domain ALEK_2836 PF01312 FlhB HrpN YscU SpaS Family ALEK_2839 PF00460 Flagella basal body rod protein ALEK_2839 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALEK_2840 PF02049 Flagellar hook-basal body complex protein FliE ALEK_2842 PF10609 NUBPL iron-transfer P-loop NTPase ALEK_2843 PF00448 SRP54-type protein, GTPase domain ALEK_2848 PF01618 MotA/TolQ/ExbB proton channel family ALEK_2849 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALEK_2849 PF16973 Flagellar motor switch protein FliN N-terminal ALEK_2853 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALEK_2853 PF00460 Flagella basal body rod protein ALEK_2853 PF07196 Flagellin hook IN motif ALEK_2853 PF07559 Flagellar basal body protein FlaE ALEK_2854 PF00460 Flagella basal body rod protein ALEK_2854 PF07559 Flagellar basal body protein FlaE ALEK_2854 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALEK_2858 PF14841 FliG middle domain ALEK_2858 PF01706 FliG C-terminal domain ALEK_2858 PF14842 FliG N-terminal domain ALEK_2859 PF01514 Secretory protein of YscJ/FliF family ALEK_2859 PF08345 Flagellar M-ring protein C-terminal ALEK_2860 PF00460 Flagella basal body rod protein ALEK_2861 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALEK_2861 PF00460 Flagella basal body rod protein ALEK_2863 PF00072 Response regulator receiver domain ALEK_2864 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALEK_2864 PF00460 Flagella basal body rod protein ALEK_2867 PF01782 RimM N-terminal domain ALEK_2869 PF00886 Ribosomal protein S16 ALEK_2870 PF02978 Signal peptide binding domain ALEK_2870 PF02881 SRP54-type protein, helical bundle domain ALEK_2870 PF00448 SRP54-type protein, GTPase domain ALEK_2871 PF00849 RNA pseudouridylate synthase ALEK_2871 PF01479 S4 domain ALEK_2872 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ALEK_2872 PF02390 Putative methyltransferase ALEK_2874 PF01784 NIF3 (NGG1p interacting factor 3) ALEK_2875 PF02091 Glycyl-tRNA synthetase alpha subunit ALEK_2876 PF00731 AIR carboxylase ALEK_2892 PF00174 Oxidoreductase molybdopterin binding domain ALEK_2893 PF13476 AAA domain ALEK_2894 PF01513 ATP-NAD kinase ALEK_2895 PF00679 Elongation factor G C-terminus ALEK_2895 PF14492 Elongation Factor G, domain II ALEK_2895 PF03144 Elongation factor Tu domain 2 ALEK_2895 PF03764 Elongation factor G, domain IV ALEK_2895 PF00009 Elongation factor Tu GTP binding domain ALEK_2896 PF00177 Ribosomal protein S7p/S5e ALEK_2897 PF00164 Ribosomal protein S12/S23 ALEK_2899 PF03466 LysR substrate binding domain ALEK_2899 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALEK_2900 PF00291 Pyridoxal-phosphate dependent enzyme ALEK_2901 PF03480 Bacterial extracellular solute-binding protein, family 7 ALEK_2903 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALEK_2904 PF00561 alpha/beta hydrolase fold ALEK_2905 PF01042 Endoribonuclease L-PSP ALEK_2906 PF03601 Conserved hypothetical protein 698 ALEK_2907 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ALEK_2909 PF09962 Uncharacterized conserved protein (DUF2196) ALEK_2911 PF00654 Voltage gated chloride channel ALEK_2913 PF02203 Tar ligand binding domain homologue ALEK_2913 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_2913 PF00672 HAMP domain ALEK_2916 PF00990 Diguanylate cyclase, GGDEF domain ALEK_2916 PF00563 EAL domain ALEK_2916 PF13426 PAS domain ALEK_2918 PF04998 RNA polymerase Rpb1, domain 5 ALEK_2918 PF05000 RNA polymerase Rpb1, domain 4 ALEK_2918 PF04983 RNA polymerase Rpb1, domain 3 ALEK_2918 PF00623 RNA polymerase Rpb1, domain 2 ALEK_2918 PF04997 RNA polymerase Rpb1, domain 1 ALEK_2919 PF04565 RNA polymerase Rpb2, domain 3 ALEK_2919 PF04563 RNA polymerase beta subunit ALEK_2919 PF04560 RNA polymerase Rpb2, domain 7 ALEK_2919 PF10385 RNA polymerase beta subunit external 1 domain ALEK_2919 PF04561 RNA polymerase Rpb2, domain 2 ALEK_2919 PF00562 RNA polymerase Rpb2, domain 6 ALEK_2920 PF16320 Ribosomal protein L7/L12 dimerisation domain ALEK_2920 PF00542 Ribosomal protein L7/L12 C-terminal domain ALEK_2921 PF00466 Ribosomal protein L10 ALEK_2922 PF00687 Ribosomal protein L1p/L10e family ALEK_2923 PF00298 Ribosomal protein L11, RNA binding domain ALEK_2923 PF03946 Ribosomal protein L11, N-terminal domain ALEK_2924 PF02357 Transcription termination factor nusG ALEK_2927 PF00471 Ribosomal protein L33 ALEK_2928 PF03144 Elongation factor Tu domain 2 ALEK_2928 PF03143 Elongation factor Tu C-terminal domain ALEK_2928 PF00009 Elongation factor Tu GTP binding domain ALEK_2933 PF08245 Mur ligase middle domain ALEK_2934 PF00953 Glycosyl transferase family 4 ALEK_2934 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ALEK_2935 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ALEK_2935 PF01676 Metalloenzyme superfamily ALEK_2936 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALEK_2936 PF00005 ABC transporter ALEK_2937 PF00912 Transglycosylase ALEK_2937 PF00905 Penicillin binding protein transpeptidase domain ALEK_2938 PF00120 Glutamine synthetase, catalytic domain ALEK_2938 PF03951 Glutamine synthetase, beta-Grasp domain ALEK_2940 PF02391 MoaE protein ALEK_2942 PF02621 Menaquinone biosynthesis ALEK_2943 PF02673 Bacitracin resistance protein BacA ALEK_2944 PF04101 Glycosyltransferase family 28 C-terminal domain ALEK_2944 PF03033 Glycosyltransferase family 28 N-terminal domain ALEK_2945 PF01098 Cell cycle protein ALEK_2947 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALEK_2957 PF00117 Glutamine amidotransferase class-I ALEK_2959 PF13416 Bacterial extracellular solute-binding protein ALEK_2961 PF08402 TOBE domain ALEK_2961 PF00005 ABC transporter ALEK_2962 PF00990 Diguanylate cyclase, GGDEF domain ALEK_2963 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ALEK_2964 PF00155 Aminotransferase class I and II ALEK_2965 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ALEK_2966 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALEK_2967 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ALEK_2967 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ALEK_2969 PF10531 SLBB domain ALEK_2969 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALEK_2969 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALEK_2970 PF00285 Citrate synthase, C-terminal domain ALEK_2971 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALEK_2971 PF00384 Molybdopterin oxidoreductase ALEK_2971 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ALEK_2972 PF00146 NADH dehydrogenase ALEK_2973 PF12838 4Fe-4S dicluster domain ALEK_2974 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ALEK_2975 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALEK_2976 PF00361 Proton-conducting membrane transporter ALEK_2976 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALEK_2977 PF00361 Proton-conducting membrane transporter ALEK_2977 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ALEK_2978 PF00361 Proton-conducting membrane transporter ALEK_2979 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALEK_2980 PF00890 FAD binding domain ALEK_2980 PF02910 Fumarate reductase flavoprotein C-term ALEK_2981 PF13183 4Fe-4S dicluster domain ALEK_2981 PF13085 2Fe-2S iron-sulfur cluster binding domain ALEK_2982 PF00350 Dynamin family ALEK_2983 PF00350 Dynamin family ALEK_2984 PF03352 Methyladenine glycosylase ALEK_2984 PF13302 Acetyltransferase (GNAT) domain ALEK_2984 PF13673 Acetyltransferase (GNAT) domain ALEK_2984 PF00958 GMP synthase C terminal domain ALEK_2984 PF00117 Glutamine amidotransferase class-I ALEK_2985 PF01863 Protein of unknown function DUF45 ALEK_2986 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALEK_2986 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALEK_2990 PF00575 S1 RNA binding domain ALEK_2990 PF09371 Tex-like protein N-terminal domain ALEK_2990 PF16921 Tex protein YqgF-like domain ALEK_2990 PF17674 HHH domain ALEK_2994 PF01042 Endoribonuclease L-PSP ALEK_2997 PF01914 MarC family integral membrane protein ALEK_2998 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_2999 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_3000 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_3001 PF00005 ABC transporter ALEK_3004 PF13649 Methyltransferase domain ALEK_3005 PF01022 Bacterial regulatory protein, arsR family ALEK_3007 PF00186 Dihydrofolate reductase ALEK_3008 PF00303 Thymidylate synthase ALEK_3010 PF07715 TonB-dependent Receptor Plug Domain ALEK_3010 PF00593 TonB dependent receptor ALEK_3014 PF09382 RQC domain ALEK_3014 PF00570 HRDC domain ALEK_3014 PF00271 Helicase conserved C-terminal domain ALEK_3014 PF16124 RecQ zinc-binding ALEK_3014 PF00270 DEAD/DEAH box helicase ALEK_3016 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALEK_3016 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALEK_3022 PF00285 Citrate synthase, C-terminal domain ALEK_3023 PF00330 Aconitase family (aconitate hydratase) ALEK_3023 PF00694 Aconitase C-terminal domain ALEK_3024 PF04303 PrpF protein ALEK_3025 PF00990 Diguanylate cyclase, GGDEF domain ALEK_3025 PF13185 GAF domain ALEK_3026 PF08447 PAS fold ALEK_3026 PF08448 PAS fold ALEK_3026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3027 PF13407 Periplasmic binding protein domain ALEK_3029 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ALEK_3029 PF03900 Porphobilinogen deaminase, C-terminal domain ALEK_3032 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ALEK_3032 PF12169 DNA polymerase III subunits gamma and tau domain III ALEK_3032 PF12170 DNA polymerase III tau subunit V interacting with alpha ALEK_3033 PF01177 Asp/Glu/Hydantoin racemase ALEK_3035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3035 PF00512 His Kinase A (phospho-acceptor) domain ALEK_3036 PF03180 NLPA lipoprotein ALEK_3037 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_3038 PF09383 NIL domain ALEK_3038 PF00005 ABC transporter ALEK_3039 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALEK_3039 PF07497 Rho termination factor, RNA-binding domain ALEK_3039 PF07498 Rho termination factor, N-terminal domain ALEK_3040 PF00578 AhpC/TSA family ALEK_3040 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALEK_3041 PF00037 4Fe-4S binding domain ALEK_3042 PF00334 Nucleoside diphosphate kinase ALEK_3044 PF01783 Ribosomal L32p protein family ALEK_3045 PF02504 Fatty acid synthesis protein ALEK_3046 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALEK_3046 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALEK_3047 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3047 PF08447 PAS fold ALEK_3047 PF08448 PAS fold ALEK_3048 PF00072 Response regulator receiver domain ALEK_3048 PF00486 Transcriptional regulatory protein, C terminal ALEK_3049 PF04264 YceI-like domain ALEK_3052 PF03591 AzlC protein ALEK_3058 PF01339 CheB methylesterase ALEK_3058 PF00072 Response regulator receiver domain ALEK_3060 PF00425 chorismate binding enzyme ALEK_3061 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALEK_3061 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALEK_3063 PF00202 Aminotransferase class-III ALEK_3065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3065 PF00512 His Kinase A (phospho-acceptor) domain ALEK_3065 PF00989 PAS fold ALEK_3066 PF00391 PEP-utilising enzyme, mobile domain ALEK_3066 PF02887 Pyruvate kinase, alpha/beta domain ALEK_3066 PF00224 Pyruvate kinase, barrel domain ALEK_3069 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3070 PF00072 Response regulator receiver domain ALEK_3070 PF00486 Transcriptional regulatory protein, C terminal ALEK_3071 PF02597 ThiS family ALEK_3071 PF05690 Thiazole biosynthesis protein ThiG ALEK_3072 PF02021 Uncharacterised protein family UPF0102 ALEK_3073 PF02254 TrkA-N domain ALEK_3073 PF00999 Sodium/hydrogen exchanger family ALEK_3075 PF12833 Helix-turn-helix domain ALEK_3075 PF02311 AraC-like ligand binding domain ALEK_3076 PF00155 Aminotransferase class I and II ALEK_3078 PF00484 Carbonic anhydrase ALEK_3080 PF04055 Radical SAM superfamily ALEK_3082 PF04028 Domain of unknown function (DUF374) ALEK_3083 PF01938 TRAM domain ALEK_3083 PF00919 Uncharacterized protein family UPF0004 ALEK_3083 PF04055 Radical SAM superfamily ALEK_3085 PF13184 NusA-like KH domain ALEK_3085 PF08529 NusA N-terminal domain ALEK_3086 PF09190 DALR domain ALEK_3086 PF01406 tRNA synthetases class I (C) catalytic domain ALEK_3087 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALEK_3087 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALEK_3089 PF01084 Ribosomal protein S18 ALEK_3090 PF00436 Single-strand binding protein family ALEK_3091 PF01250 Ribosomal protein S6 ALEK_3093 PF02623 FliW protein ALEK_3096 PF08206 Ribonuclease B OB domain ALEK_3096 PF00575 S1 RNA binding domain ALEK_3096 PF08461 Ribonuclease R winged-helix domain ALEK_3096 PF00773 RNB domain ALEK_3096 PF17876 Cold shock domain ALEK_3099 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ALEK_3099 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ALEK_3103 PF02311 AraC-like ligand binding domain ALEK_3103 PF12833 Helix-turn-helix domain ALEK_3104 PF06965 Na+/H+ antiporter 1 ALEK_3105 PF08245 Mur ligase middle domain ALEK_3105 PF02875 Mur ligase family, glutamate ligase domain ALEK_3105 PF01225 Mur ligase family, catalytic domain ALEK_3107 PF00155 Aminotransferase class I and II ALEK_3109 PF08447 PAS fold ALEK_3109 PF08448 PAS fold ALEK_3109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3111 PF00990 Diguanylate cyclase, GGDEF domain ALEK_3111 PF08448 PAS fold ALEK_3112 PF01702 Queuine tRNA-ribosyltransferase ALEK_3113 PF00263 Bacterial type II and III secretion system protein ALEK_3113 PF03958 Bacterial type II/III secretion system short domain ALEK_3118 PF00437 Type II/IV secretion system protein ALEK_3123 PF00360 Phytochrome region ALEK_3123 PF00990 Diguanylate cyclase, GGDEF domain ALEK_3123 PF01590 GAF domain ALEK_3123 PF00563 EAL domain ALEK_3125 PF02686 Glu-tRNAGln amidotransferase C subunit ALEK_3126 PF01474 Class-II DAHP synthetase family ALEK_3127 PF00923 Transaldolase/Fructose-6-phosphate aldolase ALEK_3129 PF03652 Holliday junction resolvase ALEK_3131 PF11849 Domain of unknown function (DUF3369) ALEK_3132 PF01648 4'-phosphopantetheinyl transferase superfamily ALEK_3133 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_3134 PF02569 Pantoate-beta-alanine ligase ALEK_3136 PF04264 YceI-like domain ALEK_3137 PF04055 Radical SAM superfamily ALEK_3137 PF00919 Uncharacterized protein family UPF0004 ALEK_3137 PF18693 TRAM domain ALEK_3138 PF01171 PP-loop family ALEK_3141 PF07195 Flagellar hook-associated protein 2 C-terminus ALEK_3141 PF07196 Flagellin hook IN motif ALEK_3141 PF02465 Flagellar hook-associated protein 2 N-terminus ALEK_3143 PF02107 Flagellar L-ring protein ALEK_3148 PF01313 Bacterial export proteins, family 3 ALEK_3150 PF02119 Flagellar P-ring protein ALEK_3151 PF02154 Flagellar motor switch protein FliM ALEK_3151 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALEK_3152 PF04909 Amidohydrolase ALEK_3153 PF00543 Nitrogen regulatory protein P-II ALEK_3154 PF00909 Ammonium Transporter Family ALEK_3155 PF00543 Nitrogen regulatory protein P-II ALEK_3156 PF00909 Ammonium Transporter Family ALEK_3157 PF00672 HAMP domain ALEK_3157 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_3157 PF02203 Tar ligand binding domain homologue ALEK_3158 PF00563 EAL domain ALEK_3158 PF12792 CSS motif domain associated with EAL ALEK_3159 PF00005 ABC transporter ALEK_3160 PF00528 Binding-protein-dependent transport system inner membrane component ALEK_3161 PF00005 ABC transporter ALEK_3162 PF07690 Major Facilitator Superfamily ALEK_3163 PF00069 Protein kinase domain ALEK_3163 PF03793 PASTA domain ALEK_3164 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALEK_3164 PF00384 Molybdopterin oxidoreductase ALEK_3164 PF01568 Molydopterin dinucleotide binding domain ALEK_3166 PF13247 4Fe-4S dicluster domain ALEK_3167 PF00384 Molybdopterin oxidoreductase ALEK_3167 PF01568 Molydopterin dinucleotide binding domain ALEK_3167 PF04324 BFD-like [2Fe-2S] binding domain ALEK_3167 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALEK_3172 PF04172 LrgB-like family ALEK_3173 PF03788 LrgA family ALEK_3174 PF04324 BFD-like [2Fe-2S] binding domain ALEK_3174 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALEK_3174 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALEK_3174 PF18267 Rubredoxin NAD+ reductase C-terminal domain ALEK_3174 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALEK_3178 PF08448 PAS fold ALEK_3178 PF08447 PAS fold ALEK_3178 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3180 PF01966 HD domain ALEK_3180 PF08335 GlnD PII-uridylyltransferase ALEK_3181 PF13193 AMP-binding enzyme C-terminal domain ALEK_3181 PF00501 AMP-binding enzyme ALEK_3181 PF01553 Acyltransferase ALEK_3183 PF00892 EamA-like transporter family ALEK_3184 PF00512 His Kinase A (phospho-acceptor) domain ALEK_3184 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALEK_3184 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3185 PF02374 Anion-transporting ATPase ALEK_3186 PF06953 Arsenical resistance operon trans-acting repressor ArsD ALEK_3187 PF01451 Low molecular weight phosphotyrosine protein phosphatase ALEK_3188 PF00072 Response regulator receiver domain ALEK_3188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3189 PF02659 Putative manganese efflux pump ALEK_3190 PF02040 Arsenical pump membrane protein ALEK_3192 PF01022 Bacterial regulatory protein, arsR family ALEK_3193 PF03473 MOSC domain ALEK_3193 PF03475 3-alpha domain ALEK_3194 PF04172 LrgB-like family ALEK_3196 PF13309 HTH domain ALEK_3196 PF08348 YheO-like PAS domain ALEK_3198 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALEK_3198 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALEK_3201 PF02779 Transketolase, pyrimidine binding domain ALEK_3201 PF02780 Transketolase, C-terminal domain ALEK_3201 PF00456 Transketolase, thiamine diphosphate binding domain ALEK_3202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3202 PF00512 His Kinase A (phospho-acceptor) domain ALEK_3202 PF00989 PAS fold ALEK_3206 PF00005 ABC transporter ALEK_3206 PF03412 Peptidase C39 family ALEK_3206 PF00664 ABC transporter transmembrane region ALEK_3208 PF00072 Response regulator receiver domain ALEK_3208 PF00486 Transcriptional regulatory protein, C terminal ALEK_3215 PF00920 Dehydratase family ALEK_3216 PF17820 PDZ domain ALEK_3216 PF13180 PDZ domain ALEK_3217 PF00072 Response regulator receiver domain ALEK_3217 PF00486 Transcriptional regulatory protein, C terminal ALEK_3220 PF03186 CobD/Cbib protein ALEK_3221 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALEK_3221 PF07685 CobB/CobQ-like glutamine amidotransferase domain ALEK_3222 PF11849 Domain of unknown function (DUF3369) ALEK_3227 PF00990 Diguanylate cyclase, GGDEF domain ALEK_3229 PF00155 Aminotransferase class I and II ALEK_3229 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALEK_3229 PF07685 CobB/CobQ-like glutamine amidotransferase domain ALEK_3230 PF02654 Cobalamin-5-phosphate synthase ALEK_3232 PF01914 MarC family integral membrane protein ALEK_3233 PF02277 Phosphoribosyltransferase ALEK_3234 PF11412 Disulphide bond corrector protein DsbC ALEK_3234 PF02683 Cytochrome C biogenesis protein transmembrane region ALEK_3234 PF00085 Thioredoxin ALEK_3235 PF00085 Thioredoxin ALEK_3236 PF00581 Rhodanese-like domain ALEK_3238 PF00990 Diguanylate cyclase, GGDEF domain ALEK_3238 PF00563 EAL domain ALEK_3238 PF08495 FIST N domain ALEK_3238 PF10442 FIST C domain ALEK_3239 PF02666 Phosphatidylserine decarboxylase ALEK_3241 PF06725 3D domain ALEK_3241 PF03562 MltA specific insert domain ALEK_3243 PF00012 Hsp70 protein ALEK_3244 PF01025 GrpE ALEK_3245 PF01628 HrcA protein C terminal domain ALEK_3246 PF16868 NMT1-like family ALEK_3248 PF00486 Transcriptional regulatory protein, C terminal ALEK_3248 PF00072 Response regulator receiver domain ALEK_3249 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3249 PF08448 PAS fold ALEK_3249 PF08447 PAS fold ALEK_3250 PF01416 tRNA pseudouridine synthase ALEK_3252 PF01478 Type IV leader peptidase family ALEK_3252 PF06750 Bacterial Peptidase A24 N-terminal domain ALEK_3253 PF01255 Putative undecaprenyl diphosphate synthase ALEK_3254 PF04127 DNA / pantothenate metabolism flavoprotein ALEK_3254 PF02441 Flavoprotein ALEK_3255 PF14602 Hexapeptide repeat of succinyl-transferase ALEK_3255 PF12804 MobA-like NTP transferase domain ALEK_3257 PF00270 DEAD/DEAH box helicase ALEK_3257 PF00271 Helicase conserved C-terminal domain ALEK_3258 PF05958 tRNA (Uracil-5-)-methyltransferase ALEK_3259 PF00669 Bacterial flagellin N-terminal helical region ALEK_3259 PF00700 Bacterial flagellin C-terminal helical region ALEK_3259 PF07196 Flagellin hook IN motif ALEK_3260 PF00669 Bacterial flagellin N-terminal helical region ALEK_3260 PF00700 Bacterial flagellin C-terminal helical region ALEK_3260 PF07196 Flagellin hook IN motif ALEK_3261 PF00669 Bacterial flagellin N-terminal helical region ALEK_3261 PF07196 Flagellin hook IN motif ALEK_3261 PF00700 Bacterial flagellin C-terminal helical region ALEK_3262 PF00669 Bacterial flagellin N-terminal helical region ALEK_3262 PF07196 Flagellin hook IN motif ALEK_3262 PF00700 Bacterial flagellin C-terminal helical region ALEK_3263 PF00700 Bacterial flagellin C-terminal helical region ALEK_3263 PF00669 Bacterial flagellin N-terminal helical region ALEK_3263 PF07196 Flagellin hook IN motif ALEK_3264 PF00669 Bacterial flagellin N-terminal helical region ALEK_3264 PF07196 Flagellin hook IN motif ALEK_3264 PF00700 Bacterial flagellin C-terminal helical region ALEK_3265 PF00700 Bacterial flagellin C-terminal helical region ALEK_3265 PF07196 Flagellin hook IN motif ALEK_3265 PF00669 Bacterial flagellin N-terminal helical region ALEK_3266 PF00700 Bacterial flagellin C-terminal helical region ALEK_3266 PF07196 Flagellin hook IN motif ALEK_3266 PF00669 Bacterial flagellin N-terminal helical region ALEK_3267 PF00700 Bacterial flagellin C-terminal helical region ALEK_3267 PF00669 Bacterial flagellin N-terminal helical region ALEK_3267 PF07196 Flagellin hook IN motif ALEK_3268 PF00700 Bacterial flagellin C-terminal helical region ALEK_3268 PF07196 Flagellin hook IN motif ALEK_3268 PF00669 Bacterial flagellin N-terminal helical region ALEK_3269 PF00700 Bacterial flagellin C-terminal helical region ALEK_3269 PF00669 Bacterial flagellin N-terminal helical region ALEK_3269 PF07196 Flagellin hook IN motif ALEK_3270 PF00669 Bacterial flagellin N-terminal helical region ALEK_3270 PF07196 Flagellin hook IN motif ALEK_3270 PF00700 Bacterial flagellin C-terminal helical region ALEK_3274 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALEK_3276 PF02348 Cytidylyltransferase ALEK_3278 PF02348 Cytidylyltransferase ALEK_3280 PF01425 Amidase ALEK_3282 PF03102 NeuB family ALEK_3282 PF08666 SAF domain ALEK_3284 PF02719 Polysaccharide biosynthesis protein ALEK_3286 PF00154 recA bacterial DNA recombination protein ALEK_3287 PF03952 Enolase, N-terminal domain ALEK_3287 PF00113 Enolase, C-terminal TIM barrel domain ALEK_3290 PF00999 Sodium/hydrogen exchanger family ALEK_3290 PF02080 TrkA-C domain ALEK_3290 PF02254 TrkA-N domain ALEK_3291 PF04055 Radical SAM superfamily ALEK_3291 PF06968 Biotin and Thiamin Synthesis associated domain ALEK_3293 PF13368 Topoisomerase C-terminal repeat ALEK_3293 PF01751 Toprim domain ALEK_3293 PF01131 DNA topoisomerase ALEK_3294 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ALEK_3295 PF02621 Menaquinone biosynthesis ALEK_3297 PF00361 Proton-conducting membrane transporter ALEK_3298 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ALEK_3298 PF00361 Proton-conducting membrane transporter ALEK_3299 PF00361 Proton-conducting membrane transporter ALEK_3299 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALEK_3300 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALEK_3301 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ALEK_3302 PF12838 4Fe-4S dicluster domain ALEK_3303 PF00146 NADH dehydrogenase ALEK_3304 PF00384 Molybdopterin oxidoreductase ALEK_3304 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALEK_3304 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ALEK_3307 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ALEK_3308 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ALEK_3309 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALEK_3310 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ALEK_3311 PF02203 Tar ligand binding domain homologue ALEK_3311 PF00672 HAMP domain ALEK_3311 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_3313 PF17758 Proteasomal ATPase OB N-terminal domain ALEK_3313 PF16450 Proteasomal ATPase OB C-terminal domain ALEK_3313 PF00004 ATPase family associated with various cellular activities (AAA) ALEK_3319 PF12161 HsdM N-terminal domain ALEK_3319 PF02384 N-6 DNA Methylase ALEK_3320 PF12008 Type I restriction and modification enzyme - subunit R C terminal ALEK_3320 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ALEK_3320 PF18766 SWI2/SNF2 ATPase ALEK_3324 PF02384 N-6 DNA Methylase ALEK_3324 PF12161 HsdM N-terminal domain ALEK_3329 PF01261 Xylose isomerase-like TIM barrel ALEK_3330 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALEK_3331 PF00990 Diguanylate cyclase, GGDEF domain ALEK_3331 PF08495 FIST N domain ALEK_3331 PF10442 FIST C domain ALEK_3331 PF00563 EAL domain ALEK_3332 PF00072 Response regulator receiver domain ALEK_3332 PF00486 Transcriptional regulatory protein, C terminal ALEK_3333 PF00158 Sigma-54 interaction domain ALEK_3333 PF00072 Response regulator receiver domain ALEK_3333 PF02954 Bacterial regulatory protein, Fis family ALEK_3334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3334 PF08447 PAS fold ALEK_3334 PF08448 PAS fold ALEK_3335 PF00990 Diguanylate cyclase, GGDEF domain ALEK_3335 PF08448 PAS fold ALEK_3338 PF02677 Epoxyqueuosine reductase QueH ALEK_3339 PF02684 Lipid-A-disaccharide synthetase ALEK_3340 PF07977 FabA-like domain ALEK_3341 PF00132 Bacterial transferase hexapeptide (six repeats) ALEK_3341 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ALEK_3342 PF06689 ClpX C4-type zinc finger ALEK_3342 PF07724 AAA domain (Cdc48 subfamily) ALEK_3342 PF10431 C-terminal, D2-small domain, of ClpB protein ALEK_3345 PF00677 Lumazine binding domain ALEK_3346 PF02203 Tar ligand binding domain homologue ALEK_3346 PF00672 HAMP domain ALEK_3346 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_3347 PF01134 Glucose inhibited division protein A ALEK_3347 PF13932 GidA associated domain ALEK_3349 PF13746 4Fe-4S dicluster domain ALEK_3349 PF12801 4Fe-4S binding domain ALEK_3349 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALEK_3350 PF06418 CTP synthase N-terminus ALEK_3350 PF00117 Glutamine amidotransferase class-I ALEK_3351 PF01368 DHH family ALEK_3351 PF02272 DHHA1 domain ALEK_3351 PF17768 RecJ OB domain ALEK_3356 PF00211 Adenylate and Guanylate cyclase catalytic domain ALEK_3359 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALEK_3359 PF02811 PHP domain ALEK_3359 PF14579 Helix-hairpin-helix motif ALEK_3359 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALEK_3360 PF01975 Survival protein SurE ALEK_3365 PF01967 MoaC family ALEK_3366 PF01165 Ribosomal protein S21 ALEK_3367 PF08448 PAS fold ALEK_3367 PF08447 PAS fold ALEK_3367 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3376 PF01027 Inhibitor of apoptosis-promoting Bax1 ALEK_3377 PF17792 ThiD2 family ALEK_3377 PF02581 Thiamine monophosphate synthase ALEK_3379 PF03840 Preprotein translocase SecG subunit ALEK_3381 PF01765 Ribosome recycling factor ALEK_3382 PF00156 Phosphoribosyl transferase domain ALEK_3383 PF06271 RDD family ALEK_3384 PF12832 MFS_1 like family ALEK_3385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALEK_3385 PF08447 PAS fold ALEK_3386 PF00990 Diguanylate cyclase, GGDEF domain ALEK_3386 PF08448 PAS fold ALEK_3387 PF00072 Response regulator receiver domain ALEK_3387 PF00486 Transcriptional regulatory protein, C terminal ALEK_3388 PF03883 Peroxide stress protein YaaA ALEK_3390 PF02810 SEC-C motif ALEK_3395 PF03167 Uracil DNA glycosylase superfamily ALEK_3396 PF00171 Aldehyde dehydrogenase family ALEK_3397 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALEK_3397 PF00205 Thiamine pyrophosphate enzyme, central domain ALEK_3397 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALEK_3398 PF13419 Haloacid dehalogenase-like hydrolase ALEK_3403 PF13426 PAS domain ALEK_3403 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALEK_3403 PF00072 Response regulator receiver domain ALEK_3403 PF00512 His Kinase A (phospho-acceptor) domain ALEK_3403 PF08448 PAS fold ALEK_3410 PF03473 MOSC domain ALEK_3410 PF03475 3-alpha domain ALEK_3414 PF01053 Cys/Met metabolism PLP-dependent enzyme ALEK_3415 PF02082 Transcriptional regulator ALEK_3416 PF00291 Pyridoxal-phosphate dependent enzyme ALEK_3418 PF01507 Phosphoadenosine phosphosulfate reductase family ALEK_3419 PF01507 Phosphoadenosine phosphosulfate reductase family ALEK_3420 PF00009 Elongation factor Tu GTP binding domain ALEK_3421 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALEK_3421 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALEK_3423 PF00149 Calcineurin-like phosphoesterase ALEK_3425 PF02805 Metal binding domain of Ada ALEK_3425 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALEK_3425 PF12833 Helix-turn-helix domain ALEK_3425 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALEK_3427 PF04960 Glutaminase ALEK_3429 PF00593 TonB dependent receptor ALEK_3429 PF07660 Secretin and TonB N terminus short domain ALEK_3429 PF07715 TonB-dependent Receptor Plug Domain ALEK_3431 PF08281 Sigma-70, region 4 ALEK_3431 PF04542 Sigma-70 region 2 ALEK_3432 PF13536 Putative multidrug resistance efflux transporter ALEK_3433 PF03458 UPF0126 domain ALEK_3434 PF01590 GAF domain ALEK_3434 PF00360 Phytochrome region ALEK_3434 PF00990 Diguanylate cyclase, GGDEF domain ALEK_3434 PF00563 EAL domain ALEK_3436 PF00551 Formyl transferase ALEK_3437 PF02075 Crossover junction endodeoxyribonuclease RuvC