locus-tag class description APORC_0001 PF11638 DnaA N-terminal domain APORC_0001 PF08299 Bacterial dnaA protein helix-turn-helix APORC_0001 PF00308 Bacterial dnaA protein APORC_0002 PF02767 DNA polymerase III beta subunit, central domain APORC_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain APORC_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain APORC_0003 PF00204 DNA gyrase B APORC_0003 PF00986 DNA gyrase B subunit, carboxyl terminus APORC_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_0003 PF01751 Toprim domain APORC_0007 PF01980 tRNA-methyltransferase O APORC_0008 PF13649 Methyltransferase domain APORC_0009 PF00005 ABC transporter APORC_0009 PF08402 TOBE domain APORC_0010 PF00528 Binding-protein-dependent transport system inner membrane component APORC_0013 PF03459 TOBE domain APORC_0013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APORC_0014 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APORC_0014 PF03466 LysR substrate binding domain APORC_0016 PF00849 RNA pseudouridylate synthase APORC_0017 PF00206 Lyase APORC_0017 PF10397 Adenylosuccinate lyase C-terminus APORC_0018 PF02867 Ribonucleotide reductase, barrel domain APORC_0018 PF00317 Ribonucleotide reductase, all-alpha domain APORC_0018 PF03477 ATP cone domain APORC_0019 PF00268 Ribonucleotide reductase, small chain APORC_0022 PF08240 Alcohol dehydrogenase GroES-like domain APORC_0022 PF00107 Zinc-binding dehydrogenase APORC_0023 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APORC_0023 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APORC_0024 PF02637 GatB domain APORC_0024 PF02934 GatB/GatE catalytic domain APORC_0026 PF01872 RibD C-terminal domain APORC_0026 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APORC_0027 PF00364 Biotin-requiring enzyme APORC_0028 PF00289 Biotin carboxylase, N-terminal domain APORC_0028 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APORC_0028 PF02785 Biotin carboxylase C-terminal domain APORC_0029 PF00271 Helicase conserved C-terminal domain APORC_0029 PF00270 DEAD/DEAH box helicase APORC_0030 PF01384 Phosphate transporter family APORC_0032 PF00733 Asparagine synthase APORC_0032 PF13537 Glutamine amidotransferase domain APORC_0034 PF13638 PIN domain APORC_0034 PF02562 PhoH-like protein APORC_0036 PF05496 Holliday junction DNA helicase RuvB P-loop domain APORC_0036 PF12002 MgsA AAA+ ATPase C terminal APORC_0036 PF01661 Macro domain APORC_0036 PF16193 AAA C-terminal domain APORC_0037 PF00849 RNA pseudouridylate synthase APORC_0037 PF01479 S4 domain APORC_0038 PF01380 SIS domain APORC_0038 PF00571 CBS domain APORC_0039 PF17770 Ribonuclease J C-terminal domain APORC_0039 PF00753 Metallo-beta-lactamase superfamily APORC_0039 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APORC_0040 PF00398 Ribosomal RNA adenine dimethylase APORC_0041 PF00977 Histidine biosynthesis protein APORC_0044 PF04055 Radical SAM superfamily APORC_0045 PF00749 tRNA synthetases class I (E and Q), catalytic domain APORC_0046 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APORC_0047 PF00072 Response regulator receiver domain APORC_0047 PF00486 Transcriptional regulatory protein, C terminal APORC_0048 PF00672 HAMP domain APORC_0048 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_0048 PF00512 His Kinase A (phospho-acceptor) domain APORC_0048 PF00989 PAS fold APORC_0052 PF04264 YceI-like domain APORC_0053 PF03447 Homoserine dehydrogenase, NAD binding domain APORC_0053 PF00742 Homoserine dehydrogenase APORC_0053 PF01842 ACT domain APORC_0054 PF00155 Aminotransferase class I and II APORC_0056 PF00588 SpoU rRNA Methylase family APORC_0056 PF08032 RNA 2'-O ribose methyltransferase substrate binding APORC_0057 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APORC_0058 PF01197 Ribosomal protein L31 APORC_0061 PF01040 UbiA prenyltransferase family APORC_0063 PF12849 PBP superfamily domain APORC_0064 PF12792 CSS motif domain associated with EAL APORC_0064 PF00563 EAL domain APORC_0065 PF00528 Binding-protein-dependent transport system inner membrane component APORC_0067 PF00528 Binding-protein-dependent transport system inner membrane component APORC_0068 PF00005 ABC transporter APORC_0071 PF00486 Transcriptional regulatory protein, C terminal APORC_0071 PF00072 Response regulator receiver domain APORC_0072 PF00512 His Kinase A (phospho-acceptor) domain APORC_0072 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_0072 PF08521 Two-component sensor kinase N-terminal APORC_0074 PF01165 Ribosomal protein S21 APORC_0075 PF01967 MoaC family APORC_0079 PF01593 Flavin containing amine oxidoreductase APORC_0080 PF06580 Histidine kinase APORC_0080 PF07694 5TMR of 5TMR-LYT APORC_0080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_0080 PF13492 GAF domain APORC_0081 PF04397 LytTr DNA-binding domain APORC_0081 PF00072 Response regulator receiver domain APORC_0083 PF03109 ABC1 family APORC_0087 PF08212 Lipocalin-like domain APORC_0090 PF01975 Survival protein SurE APORC_0091 PF02811 PHP domain APORC_0091 PF14579 Helix-hairpin-helix motif APORC_0091 PF07733 Bacterial DNA polymerase III alpha NTPase domain APORC_0091 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APORC_0098 PF01965 DJ-1/PfpI family APORC_0101 PF01368 DHH family APORC_0101 PF02272 DHHA1 domain APORC_0101 PF17768 RecJ OB domain APORC_0101 PF10141 Single-strand DNA-specific exonuclease, C terminal domain APORC_0102 PF06418 CTP synthase N-terminus APORC_0102 PF00117 Glutamine amidotransferase class-I APORC_0103 PF12801 4Fe-4S binding domain APORC_0103 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase APORC_0103 PF13746 4Fe-4S dicluster domain APORC_0105 PF01121 Dephospho-CoA kinase APORC_0106 PF02769 AIR synthase related protein, C-terminal domain APORC_0106 PF00586 AIR synthase related protein, N-terminal domain APORC_0107 PF00512 His Kinase A (phospho-acceptor) domain APORC_0107 PF00989 PAS fold APORC_0107 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_0108 PF00072 Response regulator receiver domain APORC_0108 PF00486 Transcriptional regulatory protein, C terminal APORC_0109 PF07992 Pyridine nucleotide-disulphide oxidoreductase APORC_0111 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APORC_0111 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APORC_0112 PF02678 Pirin APORC_0112 PF17954 Quercetinase C-terminal cupin domain APORC_0114 PF04264 YceI-like domain APORC_0116 PF00266 Aminotransferase class-V APORC_0117 PF13393 Histidyl-tRNA synthetase APORC_0118 PF00709 Adenylosuccinate synthetase APORC_0120 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APORC_0120 PF00117 Glutamine amidotransferase class-I APORC_0121 PF04608 Phosphatidylglycerophosphatase A APORC_0123 PF02542 YgbB family APORC_0123 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APORC_0125 PF01883 Iron-sulfur cluster assembly protein APORC_0125 PF10609 NUBPL iron-transfer P-loop NTPase APORC_0127 PF06339 Ectoine synthase APORC_0128 PF00202 Aminotransferase class-III APORC_0129 PF00583 Acetyltransferase (GNAT) family APORC_0132 PF01502 Phosphoribosyl-AMP cyclohydrolase APORC_0132 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APORC_0135 PF01063 Amino-transferase class IV APORC_0137 PF02607 B12 binding domain APORC_0137 PF02965 Vitamin B12 dependent methionine synthase, activation domain APORC_0137 PF00809 Pterin binding enzyme APORC_0137 PF02574 Homocysteine S-methyltransferase APORC_0137 PF02310 B12 binding domain APORC_0141 PF02664 S-Ribosylhomocysteinase (LuxS) APORC_0144 PF02405 Permease MlaE APORC_0145 PF00005 ABC transporter APORC_0145 PF09383 NIL domain APORC_0149 PF13419 Haloacid dehalogenase-like hydrolase APORC_0150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APORC_0152 PF01964 Radical SAM ThiC family APORC_0154 PF00899 ThiF family APORC_0155 PF05690 Thiazole biosynthesis protein ThiG APORC_0156 PF06968 Biotin and Thiamin Synthesis associated domain APORC_0156 PF04055 Radical SAM superfamily APORC_0157 PF17792 ThiD2 family APORC_0157 PF02581 Thiamine monophosphate synthase APORC_0158 PF08543 Phosphomethylpyrimidine kinase APORC_0158 PF02581 Thiamine monophosphate synthase APORC_0162 PF00350 Dynamin family APORC_0170 PF00380 Ribosomal protein S9/S16 APORC_0171 PF00572 Ribosomal protein L13 APORC_0172 PF03462 PCRF domain APORC_0172 PF00472 RF-1 domain APORC_0173 PF01649 Ribosomal protein S20 APORC_0174 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APORC_0174 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APORC_0174 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APORC_0174 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APORC_0175 PF01252 Signal peptidase (SPase) II APORC_0176 PF00330 Aconitase family (aconitate hydratase) APORC_0177 PF12804 MobA-like NTP transferase domain APORC_0181 PF00453 Ribosomal protein L20 APORC_0182 PF01632 Ribosomal protein L35 APORC_0183 PF00707 Translation initiation factor IF-3, C-terminal domain APORC_0183 PF05198 Translation initiation factor IF-3, N-terminal domain APORC_0184 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APORC_0184 PF03129 Anticodon binding domain APORC_0184 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APORC_0192 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APORC_0192 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APORC_0192 PF13288 DXP reductoisomerase C-terminal domain APORC_0195 PF00814 Glycoprotease family APORC_0208 PF02203 Tar ligand binding domain homologue APORC_0208 PF00672 HAMP domain APORC_0208 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_0209 PF00456 Transketolase, thiamine diphosphate binding domain APORC_0209 PF02780 Transketolase, C-terminal domain APORC_0209 PF02779 Transketolase, pyrimidine binding domain APORC_0210 PF03788 LrgA family APORC_0211 PF04172 LrgB-like family APORC_0213 PF01553 Acyltransferase APORC_0213 PF00501 AMP-binding enzyme APORC_0214 PF01451 Low molecular weight phosphotyrosine protein phosphatase APORC_0215 PF01022 Bacterial regulatory protein, arsR family APORC_0216 PF02040 Arsenical pump membrane protein APORC_0217 PF02417 Chromate transporter APORC_0220 PF00543 Nitrogen regulatory protein P-II APORC_0222 PF02154 Flagellar motor switch protein FliM APORC_0222 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APORC_0223 PF02119 Flagellar P-ring protein APORC_0225 PF01313 Bacterial export proteins, family 3 APORC_0230 PF02107 Flagellar L-ring protein APORC_0233 PF02561 Flagellar protein FliS APORC_0235 PF01171 PP-loop family APORC_0236 PF04055 Radical SAM superfamily APORC_0236 PF18693 TRAM domain APORC_0236 PF00919 Uncharacterized protein family UPF0004 APORC_0238 PF02569 Pantoate-beta-alanine ligase APORC_0239 PF00528 Binding-protein-dependent transport system inner membrane component APORC_0240 PF01648 4'-phosphopantetheinyl transferase superfamily APORC_0242 PF03616 Sodium/glutamate symporter APORC_0243 PF03652 Holliday junction resolvase APORC_0244 PF02219 Methylenetetrahydrofolate reductase APORC_0244 PF02574 Homocysteine S-methyltransferase APORC_0246 PF00923 Transaldolase/Fructose-6-phosphate aldolase APORC_0247 PF01474 Class-II DAHP synthetase family APORC_0248 PF03960 ArsC family APORC_0249 PF02686 Glu-tRNAGln amidotransferase C subunit APORC_0250 PF01702 Queuine tRNA-ribosyltransferase APORC_0252 PF08245 Mur ligase middle domain APORC_0252 PF01225 Mur ligase family, catalytic domain APORC_0252 PF02875 Mur ligase family, glutamate ligase domain APORC_0253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APORC_0253 PF03466 LysR substrate binding domain APORC_0254 PF13361 UvrD-like helicase C-terminal domain APORC_0254 PF00580 UvrD/REP helicase N-terminal domain APORC_0255 PF01509 TruB family pseudouridylate synthase (N terminal domain) APORC_0256 PF00288 GHMP kinases N terminal domain APORC_0257 PF01668 SmpB protein APORC_0258 PF00115 Cytochrome C and Quinol oxidase polypeptide I APORC_0261 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP APORC_0261 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APORC_0272 PF00472 RF-1 domain APORC_0272 PF03462 PCRF domain APORC_0275 PF02660 Glycerol-3-phosphate acyltransferase APORC_0276 PF02445 Quinolinate synthetase A protein APORC_0277 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APORC_0277 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APORC_0278 PF01368 DHH family APORC_0278 PF02272 DHHA1 domain APORC_0280 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APORC_0282 PF00288 GHMP kinases N terminal domain APORC_0282 PF08544 GHMP kinases C terminal APORC_0284 PF04760 Translation initiation factor IF-2, N-terminal region APORC_0284 PF11987 Translation-initiation factor 2 APORC_0284 PF00009 Elongation factor Tu GTP binding domain APORC_0285 PF02033 Ribosome-binding factor A APORC_0286 PF02576 RimP N-terminal domain APORC_0287 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APORC_0287 PF01872 RibD C-terminal domain APORC_0290 PF01132 Elongation factor P (EF-P) OB domain APORC_0290 PF09285 Elongation factor P, C-terminal APORC_0290 PF08207 Elongation factor P (EF-P) KOW-like domain APORC_0291 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APORC_0291 PF01842 ACT domain APORC_0291 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APORC_0292 PF00575 S1 RNA binding domain APORC_0293 PF02401 LytB protein APORC_0294 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APORC_0295 PF03147 Ferredoxin-fold anticodon binding domain APORC_0295 PF03484 tRNA synthetase B5 domain APORC_0295 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APORC_0295 PF01588 Putative tRNA binding domain APORC_0296 PF01409 tRNA synthetases class II core domain (F) APORC_0296 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APORC_0297 PF01230 HIT domain APORC_0300 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APORC_0301 PF00109 Beta-ketoacyl synthase, N-terminal domain APORC_0301 PF02801 Beta-ketoacyl synthase, C-terminal domain APORC_0302 PF00550 Phosphopantetheine attachment site APORC_0306 PF04452 RNA methyltransferase APORC_0308 PF00033 Cytochrome b/b6/petB APORC_0308 PF00032 Cytochrome b(C-terminal)/b6/petD APORC_0309 PF00355 Rieske [2Fe-2S] domain APORC_0310 PF00291 Pyridoxal-phosphate dependent enzyme APORC_0311 PF00696 Amino acid kinase family APORC_0312 PF00580 UvrD/REP helicase N-terminal domain APORC_0312 PF13361 UvrD-like helicase C-terminal domain APORC_0313 PF00119 ATP synthase A chain APORC_0314 PF13291 ACT domain APORC_0314 PF00291 Pyridoxal-phosphate dependent enzyme APORC_0315 PF08267 Cobalamin-independent synthase, N-terminal domain APORC_0315 PF01717 Cobalamin-independent synthase, Catalytic domain APORC_0317 PF01746 tRNA (Guanine-1)-methyltransferase APORC_0318 PF01245 Ribosomal protein L19 APORC_0319 PF09335 SNARE associated Golgi protein APORC_0321 PF00155 Aminotransferase class I and II APORC_0322 PF12833 Helix-turn-helix domain APORC_0323 PF01042 Endoribonuclease L-PSP APORC_0328 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APORC_0328 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APORC_0329 PF00872 Transposase, Mutator family APORC_0333 PF00005 ABC transporter APORC_0333 PF08402 TOBE domain APORC_0334 PF00528 Binding-protein-dependent transport system inner membrane component APORC_0335 PF13416 Bacterial extracellular solute-binding protein APORC_0336 PF00117 Glutamine amidotransferase class-I APORC_0340 PF00164 Ribosomal protein S12/S23 APORC_0341 PF00177 Ribosomal protein S7p/S5e APORC_0342 PF03764 Elongation factor G, domain IV APORC_0342 PF00009 Elongation factor Tu GTP binding domain APORC_0342 PF03144 Elongation factor Tu domain 2 APORC_0342 PF00679 Elongation factor G C-terminus APORC_0342 PF14492 Elongation Factor G, domain II APORC_0343 PF01513 ATP-NAD kinase APORC_0344 PF13476 AAA domain APORC_0345 PF00672 HAMP domain APORC_0345 PF00672 HAMP domain APORC_0345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_0345 PF17200 Single Cache domain 2 APORC_0345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_0345 PF17200 Single Cache domain 2 APORC_0348 PF00731 AIR carboxylase APORC_0350 PF02091 Glycyl-tRNA synthetase alpha subunit APORC_0351 PF01784 NIF3 (NGG1p interacting factor 3) APORC_0353 PF02390 Putative methyltransferase APORC_0353 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APORC_0354 PF00849 RNA pseudouridylate synthase APORC_0355 PF02978 Signal peptide binding domain APORC_0355 PF02881 SRP54-type protein, helical bundle domain APORC_0355 PF00448 SRP54-type protein, GTPase domain APORC_0356 PF00886 Ribosomal protein S16 APORC_0358 PF01782 RimM N-terminal domain APORC_0361 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APORC_0361 PF00460 Flagella basal body rod protein APORC_0362 PF00072 Response regulator receiver domain APORC_0364 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APORC_0364 PF00460 Flagella basal body rod protein APORC_0365 PF00460 Flagella basal body rod protein APORC_0366 PF08345 Flagellar M-ring protein C-terminal APORC_0366 PF01514 Secretory protein of YscJ/FliF family APORC_0367 PF14842 FliG N-terminal domain APORC_0367 PF01706 FliG C-terminal domain APORC_0367 PF14841 FliG middle domain APORC_0369 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APORC_0371 PF07559 Flagellar basal body protein FlaE APORC_0371 PF00460 Flagella basal body rod protein APORC_0371 PF07196 Flagellin hook IN motif APORC_0371 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APORC_0372 PF07196 Flagellin hook IN motif APORC_0372 PF00460 Flagella basal body rod protein APORC_0375 PF16973 Flagellar motor switch protein FliN N-terminal APORC_0375 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APORC_0379 PF00448 SRP54-type protein, GTPase domain APORC_0380 PF10609 NUBPL iron-transfer P-loop NTPase APORC_0382 PF02049 Flagellar hook-basal body complex protein FliE APORC_0383 PF00460 Flagella basal body rod protein APORC_0383 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APORC_0386 PF01312 FlhB HrpN YscU SpaS Family APORC_0388 PF18269 T3SS EscN ATPase C-terminal domain APORC_0388 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APORC_0390 PF00771 FHIPEP family APORC_0392 PF01613 Flavin reductase like domain APORC_0394 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APORC_0395 PF01321 Creatinase/Prolidase N-terminal domain APORC_0395 PF00557 Metallopeptidase family M24 APORC_0397 PF01220 Dehydroquinase class II APORC_0398 PF01979 Amidohydrolase family APORC_0399 PF01343 Peptidase family S49 APORC_0400 PF00871 Acetokinase family APORC_0401 PF01515 Phosphate acetyl/butaryl transferase APORC_0402 PF00871 Acetokinase family APORC_0403 PF00929 Exonuclease APORC_0405 PF00474 Sodium:solute symporter family APORC_0407 PF00474 Sodium:solute symporter family APORC_0409 PF00929 Exonuclease APORC_0411 PF00474 Sodium:solute symporter family APORC_0412 PF00072 Response regulator receiver domain APORC_0412 PF00486 Transcriptional regulatory protein, C terminal APORC_0413 PF00512 His Kinase A (phospho-acceptor) domain APORC_0413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_0422 PF18146 Damage-inducible protein CinA KH domain APORC_0422 PF00994 Probable molybdopterin binding domain APORC_0422 PF02464 Competence-damaged protein APORC_0423 PF06039 Malate:quinone oxidoreductase (Mqo) APORC_0424 PF08264 Anticodon-binding domain of tRNA APORC_0424 PF00133 tRNA synthetases class I (I, L, M and V) APORC_0428 PF08245 Mur ligase middle domain APORC_0428 PF02875 Mur ligase family, glutamate ligase domain APORC_0429 PF00318 Ribosomal protein S2 APORC_0430 PF00889 Elongation factor TS APORC_0431 PF00005 ABC transporter APORC_0433 PF00625 Guanylate kinase APORC_0434 PF00072 Response regulator receiver domain APORC_0434 PF12833 Helix-turn-helix domain APORC_0435 PF00403 Heavy-metal-associated domain APORC_0438 PF00005 ABC transporter APORC_0439 PF00762 Ferrochelatase APORC_0440 PF00459 Inositol monophosphatase family APORC_0441 PF01380 SIS domain APORC_0442 PF00438 S-adenosylmethionine synthetase, N-terminal domain APORC_0442 PF02772 S-adenosylmethionine synthetase, central domain APORC_0442 PF02773 S-adenosylmethionine synthetase, C-terminal domain APORC_0443 PF01039 Carboxyl transferase domain APORC_0443 PF17848 Acetyl-coA carboxylase zinc finger domain APORC_0444 PF02581 Thiamine monophosphate synthase APORC_0445 PF02590 Predicted SPOUT methyltransferase APORC_0447 PF01207 Dihydrouridine synthase (Dus) APORC_0449 PF00004 ATPase family associated with various cellular activities (AAA) APORC_0449 PF17862 AAA+ lid domain APORC_0449 PF01434 Peptidase family M41 APORC_0450 PF08502 LeuA allosteric (dimerisation) domain APORC_0450 PF00682 HMGL-like APORC_0453 PF05188 MutS domain II APORC_0453 PF00488 MutS domain V APORC_0453 PF05190 MutS family domain IV APORC_0453 PF01624 MutS domain I APORC_0453 PF05192 MutS domain III APORC_0454 PF14824 Sirohaem biosynthesis protein central APORC_0454 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APORC_0454 PF10414 Sirohaem synthase dimerisation region APORC_0457 PF00977 Histidine biosynthesis protein APORC_0458 PF00117 Glutamine amidotransferase class-I APORC_0461 PF00156 Phosphoribosyl transferase domain APORC_0462 PF12833 Helix-turn-helix domain APORC_0463 PF12706 Beta-lactamase superfamily domain APORC_0464 PF00009 Elongation factor Tu GTP binding domain APORC_0464 PF00679 Elongation factor G C-terminus APORC_0464 PF03144 Elongation factor Tu domain 2 APORC_0464 PF06421 GTP-binding protein LepA C-terminus APORC_0466 PF00403 Heavy-metal-associated domain APORC_0467 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APORC_0467 PF14572 Phosphoribosyl synthetase-associated domain APORC_0472 PF01575 MaoC like domain APORC_0473 PF13193 AMP-binding enzyme C-terminal domain APORC_0473 PF00501 AMP-binding enzyme APORC_0476 PF02617 ATP-dependent Clp protease adaptor protein ClpS APORC_0477 PF00004 ATPase family associated with various cellular activities (AAA) APORC_0477 PF17871 AAA lid domain APORC_0477 PF02861 Clp amino terminal domain, pathogenicity island component APORC_0477 PF10431 C-terminal, D2-small domain, of ClpB protein APORC_0477 PF07724 AAA domain (Cdc48 subfamily) APORC_0485 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APORC_0486 PF00905 Penicillin binding protein transpeptidase domain APORC_0487 PF01098 Cell cycle protein APORC_0488 PF03033 Glycosyltransferase family 28 N-terminal domain APORC_0488 PF04101 Glycosyltransferase family 28 C-terminal domain APORC_0489 PF02673 Bacitracin resistance protein BacA APORC_0490 PF02621 Menaquinone biosynthesis APORC_0492 PF02391 MoaE protein APORC_0494 PF03951 Glutamine synthetase, beta-Grasp domain APORC_0494 PF00120 Glutamine synthetase, catalytic domain APORC_0499 PF08264 Anticodon-binding domain of tRNA APORC_0499 PF10458 Valyl tRNA synthetase tRNA binding arm APORC_0499 PF00133 tRNA synthetases class I (I, L, M and V) APORC_0500 PF07690 Major Facilitator Superfamily APORC_0501 PF01725 Ham1 family APORC_0505 PF03807 NADP oxidoreductase coenzyme F420-dependent APORC_0505 PF14748 Pyrroline-5-carboxylate reductase dimerisation APORC_0506 PF13525 Outer membrane lipoprotein APORC_0507 PF02190 ATP-dependent protease La (LON) substrate-binding domain APORC_0507 PF00004 ATPase family associated with various cellular activities (AAA) APORC_0507 PF05362 Lon protease (S16) C-terminal proteolytic domain APORC_0509 PF01351 Ribonuclease HII APORC_0510 PF02687 FtsX-like permease family APORC_0510 PF12704 MacB-like periplasmic core domain APORC_0510 PF00005 ABC transporter APORC_0511 PF00005 ABC transporter APORC_0511 PF02687 FtsX-like permease family APORC_0511 PF12704 MacB-like periplasmic core domain APORC_0514 PF01618 MotA/TolQ/ExbB proton channel family APORC_0515 PF02472 Biopolymer transport protein ExbD/TolR APORC_0516 PF03544 Gram-negative bacterial TonB protein C-terminal APORC_0518 PF04221 RelB antitoxin APORC_0520 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APORC_0520 PF00289 Biotin carboxylase, N-terminal domain APORC_0520 PF02785 Biotin carboxylase C-terminal domain APORC_0521 PF05538 Campylobacter major outer membrane protein APORC_0525 PF17871 AAA lid domain APORC_0525 PF02861 Clp amino terminal domain, pathogenicity island component APORC_0525 PF00004 ATPase family associated with various cellular activities (AAA) APORC_0525 PF07724 AAA domain (Cdc48 subfamily) APORC_0525 PF10431 C-terminal, D2-small domain, of ClpB protein APORC_0526 PF00468 Ribosomal protein L34 APORC_0527 PF01809 Putative membrane protein insertion efficiency factor APORC_0528 PF02096 60Kd inner membrane protein APORC_0528 PF14849 YidC periplasmic domain APORC_0530 PF10396 GTP-binding protein TrmE N-terminus APORC_0530 PF01926 50S ribosome-binding GTPase APORC_0530 PF12631 MnmE helical domain APORC_0531 PF00300 Histidine phosphatase superfamily (branch 1) APORC_0532 PF01435 Peptidase family M48 APORC_0534 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APORC_0535 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APORC_0536 PF00425 chorismate binding enzyme APORC_0536 PF04715 Anthranilate synthase component I, N terminal region APORC_0538 PF00464 Serine hydroxymethyltransferase APORC_0539 PF00152 tRNA synthetases class II (D, K and N) APORC_0539 PF01336 OB-fold nucleic acid binding domain APORC_0541 PF04551 GcpE protein APORC_0542 PF00772 DnaB-like helicase N terminal domain APORC_0542 PF03796 DnaB-like helicase C terminal domain APORC_0543 PF07963 Prokaryotic N-terminal methylation motif APORC_0543 PF08334 Type II secretion system (T2SS), protein G APORC_0544 PF07715 TonB-dependent Receptor Plug Domain APORC_0544 PF00593 TonB dependent receptor APORC_0548 PF13722 5TM C-terminal transporter carbon starvation CstA APORC_0548 PF02554 Carbon starvation protein CstA APORC_0549 PF06071 Protein of unknown function (DUF933) APORC_0549 PF01926 50S ribosome-binding GTPase APORC_0551 PF00872 Transposase, Mutator family APORC_0554 PF06865 Pyrimidine/purine nucleoside phosphorylase APORC_0555 PF02769 AIR synthase related protein, C-terminal domain APORC_0555 PF00586 AIR synthase related protein, N-terminal domain APORC_0556 PF01142 tRNA pseudouridine synthase D (TruD) APORC_0558 PF02203 Tar ligand binding domain homologue APORC_0558 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_0558 PF00672 HAMP domain APORC_0559 PF01330 RuvA N terminal domain APORC_0559 PF07499 RuvA, C-terminal domain APORC_0560 PF07478 D-ala D-ala ligase C-terminus APORC_0560 PF01820 D-ala D-ala ligase N-terminus APORC_0562 PF02875 Mur ligase family, glutamate ligase domain APORC_0562 PF08245 Mur ligase middle domain APORC_0563 PF01230 HIT domain APORC_0565 PF04973 Nicotinamide mononucleotide transporter APORC_0566 PF00873 AcrB/AcrD/AcrF family APORC_0567 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APORC_0570 PF02348 Cytidylyltransferase APORC_0571 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APORC_0571 PF01367 5'-3' exonuclease, C-terminal SAM fold APORC_0571 PF00476 DNA polymerase family A APORC_0576 PF00872 Transposase, Mutator family APORC_0577 PF01118 Semialdehyde dehydrogenase, NAD binding domain APORC_0578 PF01625 Peptide methionine sulfoxide reductase APORC_0578 PF08534 Redoxin APORC_0578 PF01641 SelR domain APORC_0580 PF01925 Sulfite exporter TauE/SafE APORC_0581 PF00132 Bacterial transferase hexapeptide (six repeats) APORC_0581 PF06426 Serine acetyltransferase, N-terminal APORC_0582 PF17810 Arginine decarboxylase helical bundle domain APORC_0582 PF17944 Arginine decarboxylase C-terminal helical extension APORC_0582 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APORC_0583 PF13393 Histidyl-tRNA synthetase APORC_0583 PF03129 Anticodon binding domain APORC_0584 PF02223 Thymidylate kinase APORC_0585 PF01467 Cytidylyltransferase-like APORC_0586 PF02441 Flavoprotein APORC_0588 PF03948 Ribosomal protein L9, C-terminal domain APORC_0588 PF01281 Ribosomal protein L9, N-terminal domain APORC_0589 PF00227 Proteasome subunit APORC_0590 PF07724 AAA domain (Cdc48 subfamily) APORC_0590 PF10431 C-terminal, D2-small domain, of ClpB protein APORC_0592 PF01026 TatD related DNase APORC_0593 PF05036 Sporulation related domain APORC_0593 PF03330 Lytic transglycolase APORC_0594 PF00475 Imidazoleglycerol-phosphate dehydratase APORC_0598 PF01926 50S ribosome-binding GTPase APORC_0601 PF00338 Ribosomal protein S10p/S20e APORC_0602 PF00297 Ribosomal protein L3 APORC_0603 PF00573 Ribosomal protein L4/L1 family APORC_0604 PF00276 Ribosomal protein L23 APORC_0605 PF03947 Ribosomal Proteins L2, C-terminal domain APORC_0605 PF00181 Ribosomal Proteins L2, RNA binding domain APORC_0606 PF00203 Ribosomal protein S19 APORC_0607 PF00237 Ribosomal protein L22p/L17e APORC_0608 PF07650 KH domain APORC_0608 PF00189 Ribosomal protein S3, C-terminal domain APORC_0609 PF00252 Ribosomal protein L16p/L10e APORC_0610 PF00831 Ribosomal L29 protein APORC_0611 PF00366 Ribosomal protein S17 APORC_0612 PF00238 Ribosomal protein L14p/L23e APORC_0613 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APORC_0613 PF00467 KOW motif APORC_0614 PF00673 ribosomal L5P family C-terminus APORC_0614 PF00281 Ribosomal protein L5 APORC_0615 PF00253 Ribosomal protein S14p/S29e APORC_0616 PF00410 Ribosomal protein S8 APORC_0617 PF00347 Ribosomal protein L6 APORC_0618 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APORC_0619 PF03719 Ribosomal protein S5, C-terminal domain APORC_0619 PF00333 Ribosomal protein S5, N-terminal domain APORC_0620 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APORC_0621 PF00344 SecY translocase APORC_0622 PF00557 Metallopeptidase family M24 APORC_0623 PF01176 Translation initiation factor 1A / IF-1 APORC_0626 PF01336 OB-fold nucleic acid binding domain APORC_0626 PF00152 tRNA synthetases class II (D, K and N) APORC_0626 PF02938 GAD domain APORC_0628 PF04055 Radical SAM superfamily APORC_0628 PF08497 Radical SAM N-terminal APORC_0629 PF05191 Adenylate kinase, active site lid APORC_0634 PF00155 Aminotransferase class I and II APORC_0635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_0635 PF00672 HAMP domain APORC_0635 PF02203 Tar ligand binding domain homologue APORC_0636 PF00842 Alanine racemase, C-terminal domain APORC_0636 PF01168 Alanine racemase, N-terminal domain APORC_0637 PF01541 GIY-YIG catalytic domain APORC_0637 PF08459 UvrC Helix-hairpin-helix N-terminal APORC_0637 PF02151 UvrB/uvrC motif APORC_0638 PF02203 Tar ligand binding domain homologue APORC_0638 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_0638 PF00672 HAMP domain APORC_0639 PF06628 Catalase-related immune-responsive APORC_0639 PF00199 Catalase APORC_0640 PF00023 Ankyrin repeat APORC_0640 PF12796 Ankyrin repeats (3 copies) APORC_0641 PF00873 AcrB/AcrD/AcrF family APORC_0642 PF00873 AcrB/AcrD/AcrF family APORC_0643 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APORC_0645 PF11849 Domain of unknown function (DUF3369) APORC_0646 PF00813 FliP family APORC_0647 PF03717 Penicillin-binding Protein dimerisation domain APORC_0647 PF00905 Penicillin binding protein transpeptidase domain APORC_0651 PF00005 ABC transporter APORC_0651 PF09383 NIL domain APORC_0652 PF02390 Putative methyltransferase APORC_0654 PF00849 RNA pseudouridylate synthase APORC_0654 PF01479 S4 domain APORC_0655 PF01098 Cell cycle protein APORC_0658 PF03591 AzlC protein APORC_0660 PF00202 Aminotransferase class-III APORC_0661 PF06865 Pyrimidine/purine nucleoside phosphorylase APORC_0665 PF04539 Sigma-70 region 3 APORC_0665 PF04545 Sigma-70, region 4 APORC_0665 PF00140 Sigma-70 factor, region 1.2 APORC_0665 PF04542 Sigma-70 region 2 APORC_0666 PF00694 Aconitase C-terminal domain APORC_0667 PF00180 Isocitrate/isopropylmalate dehydrogenase APORC_0670 PF00444 Ribosomal protein L36 APORC_0671 PF00416 Ribosomal protein S13/S18 APORC_0672 PF00411 Ribosomal protein S11 APORC_0673 PF00163 Ribosomal protein S4/S9 N-terminal domain APORC_0673 PF01479 S4 domain APORC_0674 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APORC_0674 PF01000 RNA polymerase Rpb3/RpoA insert domain APORC_0674 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APORC_0675 PF01196 Ribosomal protein L17 APORC_0676 PF01425 Amidase APORC_0677 PF00571 CBS domain APORC_0677 PF00478 IMP dehydrogenase / GMP reductase domain APORC_0678 PF02646 RmuC family APORC_0680 PF01556 DnaJ C terminal domain APORC_0680 PF00226 DnaJ domain APORC_0680 PF00684 DnaJ central domain APORC_0681 PF14659 Phage integrase, N-terminal SAM-like domain APORC_0681 PF00589 Phage integrase family APORC_0685 PF00263 Bacterial type II and III secretion system protein APORC_0685 PF03958 Bacterial type II/III secretion system short domain APORC_0696 PF01915 Glycosyl hydrolase family 3 C-terminal domain APORC_0696 PF00933 Glycosyl hydrolase family 3 N terminal domain APORC_0697 PF01022 Bacterial regulatory protein, arsR family APORC_0698 PF00403 Heavy-metal-associated domain APORC_0699 PF16916 Dimerisation domain of Zinc Transporter APORC_0699 PF01545 Cation efflux family APORC_0701 PF03062 MBOAT, membrane-bound O-acyltransferase family APORC_0703 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APORC_0703 PF07992 Pyridine nucleotide-disulphide oxidoreductase APORC_0704 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APORC_0704 PF00364 Biotin-requiring enzyme APORC_0704 PF02817 e3 binding domain APORC_0705 PF00456 Transketolase, thiamine diphosphate binding domain APORC_0705 PF17831 Pyruvate dehydrogenase E1 component middle domain APORC_0706 PF03099 Biotin/lipoate A/B protein ligase family APORC_0706 PF10437 Bacterial lipoate protein ligase C-terminus APORC_0707 PF04055 Radical SAM superfamily APORC_0708 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding APORC_0708 PF18381 YcaO cyclodehydratase C-terminal domain APORC_0709 PF03475 3-alpha domain APORC_0709 PF03473 MOSC domain APORC_0710 PF00202 Aminotransferase class-III APORC_0711 PF03594 Benzoate membrane transport protein APORC_0714 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APORC_0714 PF02805 Metal binding domain of Ada APORC_0714 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APORC_0714 PF12833 Helix-turn-helix domain APORC_0715 PF00464 Serine hydroxymethyltransferase APORC_0718 PF00571 CBS domain APORC_0718 PF03471 Transporter associated domain APORC_0720 PF01883 Iron-sulfur cluster assembly protein APORC_0721 PF02657 Fe-S metabolism associated domain APORC_0722 PF00266 Aminotransferase class-V APORC_0723 PF01458 Uncharacterized protein family (UPF0051) APORC_0724 PF00005 ABC transporter APORC_0725 PF01458 Uncharacterized protein family (UPF0051) APORC_0726 PF04324 BFD-like [2Fe-2S] binding domain APORC_0726 PF01106 NifU-like domain APORC_0726 PF01592 NifU-like N terminal domain APORC_0728 PF00990 Diguanylate cyclase, GGDEF domain APORC_0729 PF00206 Lyase APORC_0729 PF14698 Argininosuccinate lyase C-terminal APORC_0731 PF00899 ThiF family APORC_0732 PF01272 Transcription elongation factor, GreA/GreB, C-term APORC_0732 PF03449 Transcription elongation factor, N-terminal APORC_0734 PF17757 UvrB interaction domain APORC_0734 PF12344 Ultra-violet resistance protein B APORC_0734 PF02151 UvrB/uvrC motif APORC_0734 PF04851 Type III restriction enzyme, res subunit APORC_0734 PF00271 Helicase conserved C-terminal domain APORC_0735 PF11849 Domain of unknown function (DUF3369) APORC_0736 PF00360 Phytochrome region APORC_0736 PF00990 Diguanylate cyclase, GGDEF domain APORC_0736 PF01590 GAF domain APORC_0736 PF00563 EAL domain APORC_0737 PF00072 Response regulator receiver domain APORC_0737 PF00989 PAS fold APORC_0737 PF01627 Hpt domain APORC_0737 PF18415 Histidine kinase receptor ArcB trans-membrane domain APORC_0737 PF00512 His Kinase A (phospho-acceptor) domain APORC_0737 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_0738 PF00633 Helix-hairpin-helix motif APORC_0738 PF10576 Iron-sulfur binding domain of endonuclease III APORC_0738 PF00730 HhH-GPD superfamily base excision DNA repair protein APORC_0742 PF02502 Ribose/Galactose Isomerase APORC_0743 PF10502 Signal peptidase, peptidase S26 APORC_0744 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APORC_0744 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APORC_0745 PF14693 Ribosomal protein TL5, C-terminal domain APORC_0745 PF01386 Ribosomal L25p family APORC_0746 PF01195 Peptidyl-tRNA hydrolase APORC_0749 PF01520 N-acetylmuramoyl-L-alanine amidase APORC_0751 PF01479 S4 domain APORC_0751 PF00579 tRNA synthetases class I (W and Y) APORC_0752 PF02824 TGS domain APORC_0752 PF04607 Region found in RelA / SpoT proteins APORC_0752 PF13291 ACT domain APORC_0753 PF01192 RNA polymerase Rpb6 APORC_0754 PF00696 Amino acid kinase family APORC_0763 PF06965 Na+/H+ antiporter 1 APORC_0766 PF03824 High-affinity nickel-transport protein APORC_0768 PF13427 Domain of unknown function (DUF4111) APORC_0768 PF01909 Nucleotidyltransferase domain APORC_0769 PF00672 HAMP domain APORC_0769 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_0769 PF02203 Tar ligand binding domain homologue APORC_0770 PF08447 PAS fold APORC_0770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_0771 PF01053 Cys/Met metabolism PLP-dependent enzyme APORC_0772 PF01053 Cys/Met metabolism PLP-dependent enzyme APORC_0773 PF01068 ATP dependent DNA ligase domain APORC_0773 PF14743 DNA ligase OB-like domain APORC_0774 PF00156 Phosphoribosyl transferase domain APORC_0775 PF00291 Pyridoxal-phosphate dependent enzyme APORC_0777 PF00883 Cytosol aminopeptidase family, catalytic domain APORC_0777 PF02789 Cytosol aminopeptidase family, N-terminal domain APORC_0778 PF03466 LysR substrate binding domain APORC_0778 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APORC_0792 PF00270 DEAD/DEAH box helicase APORC_0792 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APORC_0792 PF00271 Helicase conserved C-terminal domain APORC_0792 PF17764 3′ DNA-binding domain (3′BD) APORC_0792 PF18074 Primosomal protein N C-terminal domain APORC_0793 PF14602 Hexapeptide repeat of succinyl-transferase APORC_0793 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle APORC_0794 PF16326 ABC transporter C-terminal domain APORC_0794 PF12848 ABC transporter APORC_0794 PF00005 ABC transporter APORC_0800 PF00437 Type II/IV secretion system protein APORC_0802 PF00872 Transposase, Mutator family APORC_0810 PF12399 Branched-chain amino acid ATP-binding cassette transporter APORC_0810 PF00005 ABC transporter APORC_0812 PF02885 Glycosyl transferase family, helical bundle domain APORC_0812 PF00591 Glycosyl transferase family, a/b domain APORC_0813 PF01479 S4 domain APORC_0814 PF00764 Arginosuccinate synthase APORC_0815 PF00132 Bacterial transferase hexapeptide (six repeats) APORC_0825 PF00665 Integrase core domain APORC_0825 PF13276 HTH-like domain APORC_0825 PF13333 Integrase core domain APORC_0834 PF00580 UvrD/REP helicase N-terminal domain APORC_0834 PF13361 UvrD-like helicase C-terminal domain APORC_0835 PF09369 Domain of unknown function (DUF1998) APORC_0835 PF00271 Helicase conserved C-terminal domain APORC_0835 PF00270 DEAD/DEAH box helicase APORC_0838 PF04851 Type III restriction enzyme, res subunit APORC_0838 PF00271 Helicase conserved C-terminal domain APORC_0838 PF17757 UvrB interaction domain APORC_0838 PF02151 UvrB/uvrC motif APORC_0838 PF12344 Ultra-violet resistance protein B APORC_0840 PF00271 Helicase conserved C-terminal domain APORC_0840 PF00176 SNF2 family N-terminal domain APORC_0842 PF00145 C-5 cytosine-specific DNA methylase APORC_0842 PF01381 Helix-turn-helix APORC_0846 PF13356 Arm DNA-binding domain APORC_0846 PF00589 Phage integrase family APORC_0846 PF14659 Phage integrase, N-terminal SAM-like domain APORC_0847 PF17674 HHH domain APORC_0847 PF00575 S1 RNA binding domain APORC_0847 PF16921 Tex protein YqgF-like domain APORC_0847 PF09371 Tex-like protein N-terminal domain APORC_0849 PF03372 Endonuclease/Exonuclease/phosphatase family APORC_0854 PF00342 Phosphoglucose isomerase APORC_0855 PF00483 Nucleotidyl transferase APORC_0856 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APORC_0856 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APORC_0856 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APORC_0856 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APORC_0862 PF01653 NAD-dependent DNA ligase adenylation domain APORC_0862 PF12826 Helix-hairpin-helix motif APORC_0862 PF03120 NAD-dependent DNA ligase OB-fold domain APORC_0862 PF00533 BRCA1 C Terminus (BRCT) domain APORC_0866 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APORC_0866 PF00056 lactate/malate dehydrogenase, NAD binding domain APORC_0867 PF03971 Monomeric isocitrate dehydrogenase APORC_0870 PF12704 MacB-like periplasmic core domain APORC_0870 PF02687 FtsX-like permease family APORC_0871 PF02810 SEC-C motif APORC_0871 PF00271 Helicase conserved C-terminal domain APORC_0871 PF07517 SecA DEAD-like domain APORC_0871 PF01043 SecA preprotein cross-linking domain APORC_0871 PF07516 SecA Wing and Scaffold domain APORC_0872 PF03548 Outer membrane lipoprotein carrier protein LolA APORC_0875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APORC_0876 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APORC_0876 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg APORC_0876 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II APORC_0878 PF05175 Methyltransferase small domain APORC_0879 PF03692 Putative zinc- or iron-chelating domain APORC_0881 PF00218 Indole-3-glycerol phosphate synthase APORC_0882 PF03741 Integral membrane protein TerC family APORC_0883 PF18073 Rubredoxin metal binding domain APORC_0885 PF00448 SRP54-type protein, GTPase domain APORC_0886 PF00578 AhpC/TSA family APORC_0888 PF01966 HD domain APORC_0888 PF00013 KH domain APORC_0888 PF12072 Domain of unknown function (DUF3552) APORC_0890 PF00528 Binding-protein-dependent transport system inner membrane component APORC_0890 PF12911 N-terminal TM domain of oligopeptide transport permease C APORC_0891 PF00106 short chain dehydrogenase APORC_0894 PF01312 FlhB HrpN YscU SpaS Family APORC_0896 PF03641 Possible lysine decarboxylase APORC_0898 PF01476 LysM domain APORC_0898 PF08525 Opacity-associated protein A N-terminal motif APORC_0898 PF01551 Peptidase family M23 APORC_0899 PF01709 Transcriptional regulator APORC_0900 PF00330 Aconitase family (aconitate hydratase) APORC_0900 PF11791 Aconitate B N-terminal domain APORC_0900 PF06434 Aconitate hydratase 2 N-terminus APORC_0901 PF00072 Response regulator receiver domain APORC_0901 PF00486 Transcriptional regulatory protein, C terminal APORC_0902 PF00072 Response regulator receiver domain APORC_0902 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_0902 PF13426 PAS domain APORC_0904 PF00490 Delta-aminolevulinic acid dehydratase APORC_0905 PF00925 GTP cyclohydrolase II APORC_0906 PF02527 rRNA small subunit methyltransferase G APORC_0910 PF02092 Glycyl-tRNA synthetase beta subunit APORC_0911 PF00483 Nucleotidyl transferase APORC_0912 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APORC_0913 PF04321 RmlD substrate binding domain APORC_0914 PF16363 GDP-mannose 4,6 dehydratase APORC_0915 PF00483 Nucleotidyl transferase APORC_0916 PF16363 GDP-mannose 4,6 dehydratase APORC_0917 PF01370 NAD dependent epimerase/dehydratase family APORC_0918 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APORC_0920 PF01943 Polysaccharide biosynthesis protein APORC_0922 PF00535 Glycosyl transferase family 2 APORC_0924 PF00535 Glycosyl transferase family 2 APORC_0926 PF00535 Glycosyl transferase family 2 APORC_0927 PF02397 Bacterial sugar transferase APORC_0929 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system APORC_0930 PF16363 GDP-mannose 4,6 dehydratase APORC_0931 PF01113 Dihydrodipicolinate reductase, N-terminus APORC_0931 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain APORC_0933 PF06969 HemN C-terminal domain APORC_0933 PF04055 Radical SAM superfamily APORC_0934 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APORC_0934 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APORC_0935 PF13597 Anaerobic ribonucleoside-triphosphate reductase APORC_0935 PF03477 ATP cone domain APORC_0938 PF00156 Phosphoribosyl transferase domain APORC_0939 PF04241 Protein of unknown function (DUF423) APORC_0940 PF04461 Protein of unknown function (DUF520) APORC_0941 PF00293 NUDIX domain APORC_0943 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_0943 PF02203 Tar ligand binding domain homologue APORC_0943 PF00672 HAMP domain APORC_0946 PF01790 Prolipoprotein diacylglyceryl transferase APORC_0947 PF02754 Cysteine-rich domain APORC_0947 PF02665 Nitrate reductase gamma subunit APORC_0947 PF13183 4Fe-4S dicluster domain APORC_0949 PF02028 BCCT, betaine/carnitine/choline family transporter APORC_0950 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APORC_0951 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APORC_0952 PF02540 NAD synthase APORC_0955 PF05099 Tellurite resistance protein TerB APORC_0955 PF00226 DnaJ domain APORC_0956 PF02416 mttA/Hcf106 family APORC_0957 PF00902 Sec-independent protein translocase protein (TatC) APORC_0958 PF02547 Queuosine biosynthesis protein APORC_0959 PF00929 Exonuclease APORC_0959 PF13307 Helicase C-terminal domain APORC_0960 PF12161 HsdM N-terminal domain APORC_0960 PF02384 N-6 DNA Methylase APORC_0961 PF01420 Type I restriction modification DNA specificity domain APORC_0963 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APORC_0963 PF18766 SWI2/SNF2 ATPase APORC_0963 PF12008 Type I restriction and modification enzyme - subunit R C terminal APORC_0964 PF08501 Shikimate dehydrogenase substrate binding domain APORC_0967 PF01515 Phosphate acetyl/butaryl transferase APORC_0967 PF00390 Malic enzyme, N-terminal domain APORC_0967 PF03949 Malic enzyme, NAD binding domain APORC_0968 PF01842 ACT domain APORC_0968 PF00551 Formyl transferase APORC_0969 PF00588 SpoU rRNA Methylase family APORC_0970 PF05525 Branched-chain amino acid transport protein APORC_0972 PF02690 Na+/Pi-cotransporter APORC_0974 PF00072 Response regulator receiver domain APORC_0974 PF00486 Transcriptional regulatory protein, C terminal APORC_0977 PF01145 SPFH domain / Band 7 family APORC_0981 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APORC_0982 PF00849 RNA pseudouridylate synthase APORC_0982 PF01479 S4 domain APORC_0983 PF13419 Haloacid dehalogenase-like hydrolase APORC_0986 PF00593 TonB dependent receptor APORC_0986 PF07715 TonB-dependent Receptor Plug Domain APORC_0987 PF01497 Periplasmic binding protein APORC_0988 PF00005 ABC transporter APORC_0989 PF01032 FecCD transport family APORC_0990 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus APORC_0990 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APORC_0991 PF01926 50S ribosome-binding GTPase APORC_0991 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APORC_0993 PF02843 Phosphoribosylglycinamide synthetase, C domain APORC_0993 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APORC_0993 PF02844 Phosphoribosylglycinamide synthetase, N domain APORC_0995 PF04453 LPS transport system D APORC_0995 PF03968 OstA-like protein APORC_0997 PF00575 S1 RNA binding domain APORC_0997 PF01138 3' exoribonuclease family, domain 1 APORC_0997 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APORC_0997 PF00013 KH domain APORC_0997 PF03725 3' exoribonuclease family, domain 2 APORC_0998 PF00072 Response regulator receiver domain APORC_0999 PF01584 CheW-like domain APORC_0999 PF09078 CheY binding APORC_0999 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_0999 PF01627 Hpt domain APORC_0999 PF02895 Signal transducing histidine kinase, homodimeric domain APORC_1000 PF03705 CheR methyltransferase, all-alpha domain APORC_1000 PF01739 CheR methyltransferase, SAM binding domain APORC_1001 PF03975 CheD chemotactic sensory transduction APORC_1002 PF01339 CheB methylesterase APORC_1002 PF00072 Response regulator receiver domain APORC_1003 PF07690 Major Facilitator Superfamily APORC_1007 PF00263 Bacterial type II and III secretion system protein APORC_1007 PF03958 Bacterial type II/III secretion system short domain APORC_1016 PF18644 Phage integrase SAM-like domain APORC_1016 PF00589 Phage integrase family APORC_1019 PF01432 Peptidase family M3 APORC_1020 PF05175 Methyltransferase small domain APORC_1020 PF17827 PrmC N-terminal domain APORC_1021 PF04055 Radical SAM superfamily APORC_1021 PF06969 HemN C-terminal domain APORC_1022 PF00293 NUDIX domain APORC_1023 PF00696 Amino acid kinase family APORC_1023 PF01842 ACT domain APORC_1023 PF13840 ACT domain APORC_1026 PF00809 Pterin binding enzyme APORC_1027 PF02153 Prephenate dehydrogenase APORC_1027 PF01842 ACT domain APORC_1028 PF07244 Surface antigen variable number repeat APORC_1028 PF01103 Surface antigen APORC_1029 PF04055 Radical SAM superfamily APORC_1030 PF05193 Peptidase M16 inactive domain APORC_1031 PF00749 tRNA synthetases class I (E and Q), catalytic domain APORC_1036 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APORC_1038 PF09334 tRNA synthetases class I (M) APORC_1038 PF00133 tRNA synthetases class I (I, L, M and V) APORC_1038 PF01588 Putative tRNA binding domain APORC_1042 PF00364 Biotin-requiring enzyme APORC_1043 PF01293 Phosphoenolpyruvate carboxykinase APORC_1044 PF00925 GTP cyclohydrolase II APORC_1044 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APORC_1050 PF00248 Aldo/keto reductase family APORC_1055 PF02132 RecR protein APORC_1055 PF13662 Toprim domain APORC_1056 PF00684 DnaJ central domain APORC_1056 PF01556 DnaJ C terminal domain APORC_1056 PF00226 DnaJ domain APORC_1058 PF04305 Protein of unknown function (DUF455) APORC_1059 PF00753 Metallo-beta-lactamase superfamily APORC_1060 PF08447 PAS fold APORC_1060 PF00563 EAL domain APORC_1060 PF08448 PAS fold APORC_1060 PF00990 Diguanylate cyclase, GGDEF domain APORC_1061 PF08003 Protein of unknown function (DUF1698) APORC_1062 PF07687 Peptidase dimerisation domain APORC_1062 PF01546 Peptidase family M20/M25/M40 APORC_1063 PF05140 ResB-like family APORC_1063 PF01578 Cytochrome C assembly protein APORC_1065 PF11490 DNA polymerase III polC-type N-terminus II APORC_1065 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APORC_1065 PF14480 DNA polymerase III polC-type N-terminus I APORC_1065 PF07733 Bacterial DNA polymerase III alpha NTPase domain APORC_1065 PF14579 Helix-hairpin-helix motif APORC_1065 PF02811 PHP domain APORC_1065 PF00929 Exonuclease APORC_1066 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APORC_1067 PF00834 Ribulose-phosphate 3 epimerase family APORC_1068 PF02253 Phospholipase A1 APORC_1069 PF00571 CBS domain APORC_1069 PF03471 Transporter associated domain APORC_1069 PF01595 Cyclin M transmembrane N-terminal domain APORC_1070 PF00488 MutS domain V APORC_1070 PF01713 Smr domain APORC_1071 PF02525 Flavodoxin-like fold APORC_1072 PF01638 HxlR-like helix-turn-helix APORC_1074 PF01370 NAD dependent epimerase/dehydratase family APORC_1074 PF08338 Domain of unknown function (DUF1731) APORC_1076 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APORC_1077 PF00005 ABC transporter APORC_1078 PF00994 Probable molybdopterin binding domain APORC_1080 PF06480 FtsH Extracellular APORC_1080 PF17862 AAA+ lid domain APORC_1080 PF00004 ATPase family associated with various cellular activities (AAA) APORC_1080 PF01434 Peptidase family M41 APORC_1081 PF00919 Uncharacterized protein family UPF0004 APORC_1081 PF04055 Radical SAM superfamily APORC_1083 PF01761 3-dehydroquinate synthase APORC_1094 PF07669 Eco57I restriction-modification methylase APORC_1095 PF17854 FtsK alpha domain APORC_1095 PF09397 Ftsk gamma domain APORC_1095 PF01580 FtsK/SpoIIIE family APORC_1096 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APORC_1096 PF00132 Bacterial transferase hexapeptide (six repeats) APORC_1097 PF10369 Small subunit of acetolactate synthase APORC_1098 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APORC_1098 PF00205 Thiamine pyrophosphate enzyme, central domain APORC_1098 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APORC_1100 PF02541 Ppx/GppA phosphatase family APORC_1105 PF13426 PAS domain APORC_1105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_1105 PF00072 Response regulator receiver domain APORC_1106 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APORC_1107 PF00072 Response regulator receiver domain APORC_1107 PF00486 Transcriptional regulatory protein, C terminal APORC_1109 PF01568 Molydopterin dinucleotide binding domain APORC_1109 PF00384 Molybdopterin oxidoreductase APORC_1109 PF18364 Molybdopterin oxidoreductase N-terminal domain APORC_1111 PF01171 PP-loop family APORC_1113 PF03453 MoeA N-terminal region (domain I and II) APORC_1113 PF00994 Probable molybdopterin binding domain APORC_1113 PF03454 MoeA C-terminal region (domain IV) APORC_1115 PF01435 Peptidase family M48 APORC_1115 PF16491 CAAX prenyl protease N-terminal, five membrane helices APORC_1117 PF03061 Thioesterase superfamily APORC_1120 PF10518 TAT (twin-arginine translocation) pathway signal sequence APORC_1120 PF07992 Pyridine nucleotide-disulphide oxidoreductase APORC_1120 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding APORC_1121 PF00072 Response regulator receiver domain APORC_1122 PF00512 His Kinase A (phospho-acceptor) domain APORC_1122 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_1122 PF00989 PAS fold APORC_1123 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APORC_1124 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component APORC_1125 PF03480 Bacterial extracellular solute-binding protein, family 7 APORC_1126 PF03454 MoeA C-terminal region (domain IV) APORC_1126 PF00994 Probable molybdopterin binding domain APORC_1126 PF03453 MoeA N-terminal region (domain I and II) APORC_1128 PF02634 FdhD/NarQ family APORC_1130 PF13247 4Fe-4S dicluster domain APORC_1134 PF13237 4Fe-4S dicluster domain APORC_1134 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APORC_1134 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APORC_1134 PF00384 Molybdopterin oxidoreductase APORC_1134 PF01568 Molydopterin dinucleotide binding domain APORC_1136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_1136 PF00512 His Kinase A (phospho-acceptor) domain APORC_1137 PF00158 Sigma-54 interaction domain APORC_1137 PF02954 Bacterial regulatory protein, Fis family APORC_1137 PF00072 Response regulator receiver domain APORC_1139 PF00403 Heavy-metal-associated domain APORC_1141 PF01841 Transglutaminase-like superfamily APORC_1142 PF02769 AIR synthase related protein, C-terminal domain APORC_1142 PF00586 AIR synthase related protein, N-terminal domain APORC_1145 PF02600 Disulfide bond formation protein DsbB APORC_1149 PF17785 PUA-like domain APORC_1149 PF10672 S-adenosylmethionine-dependent methyltransferase APORC_1151 PF00155 Aminotransferase class I and II APORC_1152 PF01863 Protein of unknown function DUF45 APORC_1155 PF00890 FAD binding domain APORC_1156 PF02540 NAD synthase APORC_1156 PF00117 Glutamine amidotransferase class-I APORC_1156 PF00958 GMP synthase C terminal domain APORC_1157 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system APORC_1158 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APORC_1159 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APORC_1162 PF00561 alpha/beta hydrolase fold APORC_1164 PF00664 ABC transporter transmembrane region APORC_1164 PF00005 ABC transporter APORC_1167 PF00075 RNase H APORC_1168 PF00682 HMGL-like APORC_1168 PF07836 DmpG-like communication domain APORC_1174 PF05860 haemagglutination activity domain APORC_1175 PF00486 Transcriptional regulatory protein, C terminal APORC_1175 PF00072 Response regulator receiver domain APORC_1176 PF08447 PAS fold APORC_1176 PF00512 His Kinase A (phospho-acceptor) domain APORC_1176 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_1176 PF00989 PAS fold APORC_1177 PF00872 Transposase, Mutator family APORC_1179 PF17755 UvrA DNA-binding domain APORC_1179 PF17760 UvrA interaction domain APORC_1181 PF01795 MraW methylase family APORC_1183 PF00216 Bacterial DNA-binding protein APORC_1187 PF04225 Opacity-associated protein A LysM-like domain APORC_1187 PF01551 Peptidase family M23 APORC_1189 PF01361 Tautomerase enzyme APORC_1198 PF12823 Domain of unknown function (DUF3817) APORC_1200 PF02568 Thiamine biosynthesis protein (ThiI) APORC_1200 PF02926 THUMP domain APORC_1204 PF01205 Uncharacterized protein family UPF0029 APORC_1204 PF09186 Domain of unknown function (DUF1949) APORC_1205 PF01479 S4 domain APORC_1205 PF01728 FtsJ-like methyltransferase APORC_1206 PF01687 Riboflavin kinase APORC_1206 PF06574 FAD synthetase APORC_1207 PF13649 Methyltransferase domain APORC_1208 PF00578 AhpC/TSA family APORC_1210 PF01565 FAD binding domain APORC_1210 PF02913 FAD linked oxidases, C-terminal domain APORC_1213 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APORC_1215 PF00793 DAHP synthetase I family APORC_1219 PF00885 6,7-dimethyl-8-ribityllumazine synthase APORC_1220 PF01029 NusB family APORC_1221 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APORC_1225 PF11867 Domain of unknown function (DUF3387) APORC_1225 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APORC_1225 PF18766 SWI2/SNF2 ATPase APORC_1227 PF17191 RecG wedge domain APORC_1227 PF00270 DEAD/DEAH box helicase APORC_1227 PF13749 Putative ATP-dependent DNA helicase recG C-terminal APORC_1233 PF12161 HsdM N-terminal domain APORC_1233 PF02384 N-6 DNA Methylase APORC_1237 PF04231 Endonuclease I APORC_1239 PF00216 Bacterial DNA-binding protein APORC_1260 PF00535 Glycosyl transferase family 2 APORC_1261 PF04138 GtrA-like protein APORC_1266 PF00485 Phosphoribulokinase / Uridine kinase family APORC_1274 PF06067 Domain of unknown function (DUF932) APORC_1282 PF02899 Phage integrase, N-terminal SAM-like domain APORC_1282 PF00589 Phage integrase family APORC_1287 PF00313 'Cold-shock' DNA-binding domain APORC_1291 PF11734 TilS substrate C-terminal domain APORC_1291 PF09179 TilS substrate binding domain APORC_1291 PF01171 PP-loop family APORC_1303 PF02661 Fic/DOC family APORC_1305 PF09962 Uncharacterized conserved protein (DUF2196) APORC_1309 PF00872 Transposase, Mutator family APORC_1313 PF04335 VirB8 protein APORC_1315 PF03743 Bacterial conjugation TrbI-like protein APORC_1317 PF00437 Type II/IV secretion system protein APORC_1320 PF01381 Helix-turn-helix APORC_1323 PF02142 MGS-like domain APORC_1323 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APORC_1323 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APORC_1325 PF00561 alpha/beta hydrolase fold APORC_1327 PF04143 Sulphur transport APORC_1328 PF12327 FtsZ family, C-terminal domain APORC_1328 PF00091 Tubulin/FtsZ family, GTPase domain APORC_1329 PF02491 SHS2 domain inserted in FTSA APORC_1331 PF13538 UvrD-like helicase C-terminal domain APORC_1331 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain APORC_1331 PF14490 Helix-hairpin-helix containing domain APORC_1333 PF03960 ArsC family APORC_1336 PF03738 Glutathionylspermidine synthase preATP-grasp APORC_1337 PF03061 Thioesterase superfamily APORC_1338 PF12848 ABC transporter APORC_1338 PF00005 ABC transporter APORC_1340 PF00881 Nitroreductase family APORC_1346 PF03601 Conserved hypothetical protein 698 APORC_1347 PF03466 LysR substrate binding domain APORC_1347 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APORC_1349 PF02525 Flavodoxin-like fold APORC_1352 PF00893 Small Multidrug Resistance protein APORC_1353 PF13581 Histidine kinase-like ATPase domain APORC_1354 PF00072 Response regulator receiver domain APORC_1354 PF00486 Transcriptional regulatory protein, C terminal APORC_1356 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APORC_1358 PF01266 FAD dependent oxidoreductase APORC_1358 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APORC_1359 PF01556 DnaJ C terminal domain APORC_1359 PF00226 DnaJ domain APORC_1360 PF13411 MerR HTH family regulatory protein APORC_1362 PF02130 Uncharacterized protein family UPF0054 APORC_1365 PF03023 Lipid II flippase MurJ APORC_1366 PF00005 ABC transporter APORC_1366 PF00664 ABC transporter transmembrane region APORC_1367 PF01180 Dihydroorotate dehydrogenase APORC_1368 PF00675 Insulinase (Peptidase family M16) APORC_1368 PF05193 Peptidase M16 inactive domain APORC_1369 PF00701 Dihydrodipicolinate synthetase family APORC_1371 PF01066 CDP-alcohol phosphatidyltransferase APORC_1372 PF17820 PDZ domain APORC_1372 PF02163 Peptidase family M50 APORC_1373 PF01168 Alanine racemase, N-terminal domain APORC_1374 PF00672 HAMP domain APORC_1374 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_1374 PF02203 Tar ligand binding domain homologue APORC_1375 PF08447 PAS fold APORC_1375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_1377 PF00171 Aldehyde dehydrogenase family APORC_1381 PF00258 Flavodoxin APORC_1382 PF01475 Ferric uptake regulator family APORC_1384 PF07664 Ferrous iron transport protein B C terminus APORC_1384 PF02421 Ferrous iron transport protein B APORC_1384 PF07670 Nucleoside recognition APORC_1385 PF04377 Arginine-tRNA-protein transferase, C terminus APORC_1385 PF04376 Arginine-tRNA-protein transferase, N terminus APORC_1386 PF00290 Tryptophan synthase alpha chain APORC_1387 PF02548 Ketopantoate hydroxymethyltransferase APORC_1388 PF05491 RuvB C-terminal winged helix domain APORC_1388 PF17864 RuvB AAA lid domain APORC_1388 PF05496 Holliday junction DNA helicase RuvB P-loop domain APORC_1389 PF01594 AI-2E family transporter APORC_1398 PF01227 GTP cyclohydrolase I APORC_1399 PF01544 CorA-like Mg2+ transporter protein APORC_1401 PF00437 Type II/IV secretion system protein APORC_1404 PF07650 KH domain APORC_1404 PF01926 50S ribosome-binding GTPase APORC_1405 PF01078 Magnesium chelatase, subunit ChlI APORC_1405 PF13335 Magnesium chelatase, subunit ChlI C-terminal APORC_1407 PF01327 Polypeptide deformylase APORC_1408 PF00574 Clp protease APORC_1409 PF05697 Bacterial trigger factor protein (TF) APORC_1409 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APORC_1409 PF05698 Bacterial trigger factor protein (TF) C-terminus APORC_1410 PF03976 Polyphosphate kinase 2 (PPK2) APORC_1411 PF03976 Polyphosphate kinase 2 (PPK2) APORC_1412 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APORC_1413 PF16653 Saccharopine dehydrogenase C-terminal domain APORC_1413 PF03435 Saccharopine dehydrogenase NADP binding domain APORC_1415 PF00589 Phage integrase family APORC_1415 PF14659 Phage integrase, N-terminal SAM-like domain APORC_1415 PF13356 Arm DNA-binding domain APORC_1416 PF18766 SWI2/SNF2 ATPase APORC_1416 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APORC_1416 PF12008 Type I restriction and modification enzyme - subunit R C terminal APORC_1421 PF01420 Type I restriction modification DNA specificity domain APORC_1422 PF02384 N-6 DNA Methylase APORC_1422 PF12161 HsdM N-terminal domain APORC_1423 PF13614 AAA domain APORC_1428 PF00239 Resolvase, N terminal domain APORC_1428 PF02796 Helix-turn-helix domain of resolvase APORC_1433 PF04231 Endonuclease I APORC_1435 PF00216 Bacterial DNA-binding protein APORC_1438 PF11799 impB/mucB/samB family C-terminal domain APORC_1438 PF00817 impB/mucB/samB family APORC_1439 PF02146 Sir2 family APORC_1445 PF04389 Peptidase family M28 APORC_1449 PF07728 AAA domain (dynein-related subfamily) APORC_1449 PF12102 Domain of unknown function (DUF3578) APORC_1486 PF03150 Di-haem cytochrome c peroxidase APORC_1487 PF04116 Fatty acid hydroxylase superfamily APORC_1492 PF00137 ATP synthase subunit C APORC_1501 PF01208 Uroporphyrinogen decarboxylase (URO-D) APORC_1503 PF02774 Semialdehyde dehydrogenase, dimerisation domain APORC_1503 PF01118 Semialdehyde dehydrogenase, NAD binding domain APORC_1504 PF00521 DNA gyrase/topoisomerase IV, subunit A APORC_1504 PF03989 DNA gyrase C-terminal domain, beta-propeller APORC_1506 PF01960 ArgJ family APORC_1508 PF00830 Ribosomal L28 family APORC_1510 PF08645 Polynucleotide kinase 3 phosphatase APORC_1511 PF01370 NAD dependent epimerase/dehydratase family APORC_1512 PF00294 pfkB family carbohydrate kinase APORC_1512 PF01467 Cytidylyltransferase-like APORC_1513 PF13580 SIS domain APORC_1514 PF00884 Sulfatase APORC_1515 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APORC_1517 PF00884 Sulfatase APORC_1518 PF00535 Glycosyl transferase family 2 APORC_1521 PF00535 Glycosyl transferase family 2 APORC_1523 PF00884 Sulfatase APORC_1523 PF11893 Domain of unknown function (DUF3413) APORC_1524 PF01219 Prokaryotic diacylglycerol kinase APORC_1526 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APORC_1528 PF00037 4Fe-4S binding domain APORC_1529 PF00459 Inositol monophosphatase family APORC_1532 PF03958 Bacterial type II/III secretion system short domain APORC_1532 PF00263 Bacterial type II and III secretion system protein APORC_1533 PF13344 Haloacid dehalogenase-like hydrolase APORC_1533 PF00293 NUDIX domain APORC_1538 PF03841 L-seryl-tRNA selenium transferase APORC_1539 PF09105 Elongation factor SelB, winged helix APORC_1539 PF09106 Elongation factor SelB, winged helix APORC_1539 PF09107 Elongation factor SelB, winged helix APORC_1539 PF03144 Elongation factor Tu domain 2 APORC_1539 PF00009 Elongation factor Tu GTP binding domain APORC_1548 PF10442 FIST C domain APORC_1548 PF00990 Diguanylate cyclase, GGDEF domain APORC_1548 PF08495 FIST N domain APORC_1548 PF00563 EAL domain APORC_1549 PF01243 Pyridoxamine 5'-phosphate oxidase APORC_1549 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APORC_1550 PF00563 EAL domain APORC_1550 PF03707 Bacterial signalling protein N terminal repeat APORC_1550 PF00990 Diguanylate cyclase, GGDEF domain APORC_1551 PF03880 DbpA RNA binding domain APORC_1551 PF00271 Helicase conserved C-terminal domain APORC_1551 PF00270 DEAD/DEAH box helicase APORC_1553 PF00183 Hsp90 protein APORC_1554 PF01757 Acyltransferase family APORC_1562 PF04073 Aminoacyl-tRNA editing domain APORC_1563 PF08713 DNA alkylation repair enzyme APORC_1564 PF05958 tRNA (Uracil-5-)-methyltransferase APORC_1565 PF00491 Arginase family APORC_1566 PF08502 LeuA allosteric (dimerisation) domain APORC_1566 PF00682 HMGL-like APORC_1567 PF12833 Helix-turn-helix domain APORC_1568 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APORC_1568 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APORC_1569 PF00924 Mechanosensitive ion channel APORC_1570 PF02833 DHHA2 domain APORC_1570 PF01368 DHH family APORC_1571 PF02810 SEC-C motif APORC_1575 PF00206 Lyase APORC_1575 PF10415 Fumarase C C-terminus APORC_1576 PF01048 Phosphorylase superfamily APORC_1577 PF00698 Acyl transferase domain APORC_1578 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APORC_1580 PF00691 OmpA family APORC_1581 PF04052 TolB amino-terminal domain APORC_1583 PF02472 Biopolymer transport protein ExbD/TolR APORC_1584 PF01618 MotA/TolQ/ExbB proton channel family APORC_1585 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APORC_1586 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APORC_1586 PF02874 ATP synthase alpha/beta family, beta-barrel domain APORC_1587 PF00231 ATP synthase APORC_1588 PF00306 ATP synthase alpha/beta chain, C terminal domain APORC_1588 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APORC_1588 PF02874 ATP synthase alpha/beta family, beta-barrel domain APORC_1589 PF00213 ATP synthase delta (OSCP) subunit APORC_1590 PF00430 ATP synthase B/B' CF(0) APORC_1592 PF02195 ParB-like nuclease domain APORC_1592 PF17762 HTH domain found in ParB protein APORC_1593 PF13614 AAA domain APORC_1594 PF03099 Biotin/lipoate A/B protein ligase family APORC_1594 PF02237 Biotin protein ligase C terminal domain APORC_1594 PF08279 HTH domain APORC_1596 PF02911 Formyl transferase, C-terminal domain APORC_1596 PF00551 Formyl transferase APORC_1597 PF00696 Amino acid kinase family APORC_1598 PF01926 50S ribosome-binding GTPase APORC_1598 PF01018 GTP1/OBG APORC_1599 PF01016 Ribosomal L27 protein APORC_1600 PF00829 Ribosomal prokaryotic L21 protein APORC_1601 PF01807 CHC2 zinc finger APORC_1601 PF16730 DnaG-primase C-terminal, helicase-binding domain APORC_1601 PF13662 Toprim domain APORC_1601 PF08275 DNA primase catalytic core, N-terminal domain APORC_1603 PF00035 Double-stranded RNA binding motif APORC_1603 PF14622 Ribonuclease-III-like APORC_1604 PF01264 Chorismate synthase APORC_1606 PF03976 Polyphosphate kinase 2 (PPK2) APORC_1609 PF01625 Peptide methionine sulfoxide reductase APORC_1619 PF13181 Tetratricopeptide repeat APORC_1619 PF08238 Sel1 repeat APORC_1621 PF01641 SelR domain APORC_1622 PF01557 Fumarylacetoacetate (FAA) hydrolase family APORC_1624 PF00202 Aminotransferase class-III APORC_1625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_1625 PF00512 His Kinase A (phospho-acceptor) domain APORC_1625 PF00497 Bacterial extracellular solute-binding proteins, family 3 APORC_1626 PF01808 AICARFT/IMPCHase bienzyme APORC_1626 PF02142 MGS-like domain APORC_1627 PF02769 AIR synthase related protein, C-terminal domain APORC_1627 PF00586 AIR synthase related protein, N-terminal domain APORC_1627 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APORC_1629 PF01464 Transglycosylase SLT domain APORC_1629 PF10145 Phage-related minor tail protein APORC_1629 PF01551 Peptidase family M23 APORC_1633 PF04983 RNA polymerase Rpb1, domain 3 APORC_1633 PF00623 RNA polymerase Rpb1, domain 2 APORC_1633 PF04998 RNA polymerase Rpb1, domain 5 APORC_1633 PF04997 RNA polymerase Rpb1, domain 1 APORC_1633 PF05000 RNA polymerase Rpb1, domain 4 APORC_1634 PF10385 RNA polymerase beta subunit external 1 domain APORC_1634 PF04565 RNA polymerase Rpb2, domain 3 APORC_1634 PF00562 RNA polymerase Rpb2, domain 6 APORC_1634 PF04561 RNA polymerase Rpb2, domain 2 APORC_1634 PF04563 RNA polymerase beta subunit APORC_1634 PF04560 RNA polymerase Rpb2, domain 7 APORC_1635 PF16320 Ribosomal protein L7/L12 dimerisation domain APORC_1635 PF00542 Ribosomal protein L7/L12 C-terminal domain APORC_1636 PF00466 Ribosomal protein L10 APORC_1637 PF00687 Ribosomal protein L1p/L10e family APORC_1638 PF03946 Ribosomal protein L11, N-terminal domain APORC_1638 PF00298 Ribosomal protein L11, RNA binding domain APORC_1639 PF02357 Transcription termination factor nusG APORC_1642 PF00471 Ribosomal protein L33 APORC_1643 PF00009 Elongation factor Tu GTP binding domain APORC_1643 PF03143 Elongation factor Tu C-terminal domain APORC_1643 PF03144 Elongation factor Tu domain 2 APORC_1648 PF08245 Mur ligase middle domain APORC_1649 PF00953 Glycosyl transferase family 4 APORC_1649 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APORC_1650 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APORC_1650 PF01676 Metalloenzyme superfamily APORC_1651 PF00005 ABC transporter APORC_1651 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APORC_1652 PF00912 Transglycosylase APORC_1652 PF00905 Penicillin binding protein transpeptidase domain APORC_1665 PF00174 Oxidoreductase molybdopterin binding domain APORC_1666 PF00999 Sodium/hydrogen exchanger family APORC_1666 PF02080 TrkA-C domain APORC_1666 PF02254 TrkA-N domain APORC_1667 PF00580 UvrD/REP helicase N-terminal domain APORC_1667 PF13361 UvrD-like helicase C-terminal domain APORC_1669 PF08534 Redoxin APORC_1670 PF13509 S1 domain APORC_1670 PF17783 CvfB-like winged helix domain APORC_1671 PF00950 ABC 3 transport family APORC_1672 PF00005 ABC transporter APORC_1673 PF02698 DUF218 domain APORC_1674 PF00672 HAMP domain APORC_1674 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_1674 PF02203 Tar ligand binding domain homologue APORC_1675 PF01875 Memo-like protein APORC_1677 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APORC_1677 PF10414 Sirohaem synthase dimerisation region APORC_1679 PF02384 N-6 DNA Methylase APORC_1679 PF12161 HsdM N-terminal domain APORC_1680 PF02661 Fic/DOC family APORC_1680 PF13784 Fic/DOC family N-terminal APORC_1681 PF08463 EcoEI R protein C-terminal APORC_1681 PF00271 Helicase conserved C-terminal domain APORC_1681 PF04851 Type III restriction enzyme, res subunit APORC_1681 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) APORC_1682 PF00118 TCP-1/cpn60 chaperonin family APORC_1683 PF00166 Chaperonin 10 Kd subunit APORC_1684 PF00348 Polyprenyl synthetase APORC_1685 PF02575 YbaB/EbfC DNA-binding family APORC_1686 PF02261 Aspartate decarboxylase APORC_1687 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APORC_1688 PF01584 CheW-like domain APORC_1689 PF13742 OB-fold nucleic acid binding domain APORC_1689 PF02601 Exonuclease VII, large subunit APORC_1690 PF01209 ubiE/COQ5 methyltransferase family APORC_1693 PF13277 YmdB-like protein APORC_1694 PF00512 His Kinase A (phospho-acceptor) domain APORC_1694 PF18719 ArlS sensor domain APORC_1694 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_1696 PF02954 Bacterial regulatory protein, Fis family APORC_1696 PF00158 Sigma-54 interaction domain APORC_1696 PF00072 Response regulator receiver domain APORC_1697 PF00672 HAMP domain APORC_1697 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_1697 PF02203 Tar ligand binding domain homologue APORC_1699 PF08521 Two-component sensor kinase N-terminal APORC_1699 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_1699 PF00512 His Kinase A (phospho-acceptor) domain APORC_1700 PF00072 Response regulator receiver domain APORC_1700 PF00486 Transcriptional regulatory protein, C terminal APORC_1707 PF01966 HD domain APORC_1711 PF13419 Haloacid dehalogenase-like hydrolase APORC_1712 PF00682 HMGL-like APORC_1712 PF07836 DmpG-like communication domain APORC_1713 PF02348 Cytidylyltransferase APORC_1715 PF01467 Cytidylyltransferase-like APORC_1720 PF02559 CarD-like/TRCF domain APORC_1720 PF03461 TRCF domain APORC_1720 PF17757 UvrB interaction domain APORC_1720 PF00270 DEAD/DEAH box helicase APORC_1720 PF00271 Helicase conserved C-terminal domain APORC_1725 PF00872 Transposase, Mutator family APORC_1728 PF08245 Mur ligase middle domain APORC_1730 PF00133 tRNA synthetases class I (I, L, M and V) APORC_1730 PF09334 tRNA synthetases class I (M) APORC_1730 PF13603 Leucyl-tRNA synthetase, Domain 2 APORC_1732 PF01618 MotA/TolQ/ExbB proton channel family APORC_1733 PF00691 OmpA family APORC_1733 PF13677 Membrane MotB of proton-channel complex MotA/MotB APORC_1735 PF07549 SecD/SecF GG Motif APORC_1735 PF02355 Protein export membrane protein APORC_1736 PF02355 Protein export membrane protein APORC_1737 PF02699 Preprotein translocase subunit APORC_1739 PF00593 TonB dependent receptor APORC_1739 PF07715 TonB-dependent Receptor Plug Domain APORC_1740 PF01743 Poly A polymerase head domain APORC_1740 PF12627 Probable RNA and SrmB- binding site of polymerase A APORC_1741 PF05552 Conserved TM helix APORC_1741 PF00924 Mechanosensitive ion channel APORC_1742 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APORC_1742 PF03129 Anticodon binding domain APORC_1742 PF04073 Aminoacyl-tRNA editing domain APORC_1743 PF01488 Shikimate / quinate 5-dehydrogenase APORC_1743 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APORC_1743 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APORC_1744 PF00348 Polyprenyl synthetase APORC_1746 PF00815 Histidinol dehydrogenase APORC_1747 PF01202 Shikimate kinase APORC_1749 PF01618 MotA/TolQ/ExbB proton channel family APORC_1750 PF02472 Biopolymer transport protein ExbD/TolR APORC_1751 PF01594 AI-2E family transporter APORC_1752 PF01116 Fructose-bisphosphate aldolase class-II APORC_1753 PF00639 PPIC-type PPIASE domain APORC_1754 PF00072 Response regulator receiver domain APORC_1754 PF00486 Transcriptional regulatory protein, C terminal APORC_1755 PF00512 His Kinase A (phospho-acceptor) domain APORC_1755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_1755 PF00672 HAMP domain APORC_1758 PF02082 Transcriptional regulator APORC_1759 PF00312 Ribosomal protein S15 APORC_1760 PF04055 Radical SAM superfamily APORC_1760 PF06463 Molybdenum Cofactor Synthesis C APORC_1764 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APORC_1764 PF10518 TAT (twin-arginine translocation) pathway signal sequence APORC_1764 PF01568 Molydopterin dinucleotide binding domain APORC_1764 PF00384 Molybdopterin oxidoreductase APORC_1765 PF12838 4Fe-4S dicluster domain APORC_1765 PF12800 4Fe-4S binding domain APORC_1766 PF12801 4Fe-4S binding domain APORC_1766 PF13237 4Fe-4S dicluster domain APORC_1767 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) APORC_1771 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APORC_1771 PF02403 Seryl-tRNA synthetase N-terminal domain APORC_1774 PF01695 IstB-like ATP binding protein APORC_1779 PF02659 Putative manganese efflux pump APORC_1780 PF03994 Domain of Unknown Function (DUF350) APORC_1781 PF00579 tRNA synthetases class I (W and Y) APORC_1782 PF00072 Response regulator receiver domain APORC_1782 PF00486 Transcriptional regulatory protein, C terminal APORC_1783 PF00672 HAMP domain APORC_1783 PF00512 His Kinase A (phospho-acceptor) domain APORC_1783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_1784 PF00202 Aminotransferase class-III APORC_1786 PF03831 PhnA domain APORC_1786 PF08274 PhnA Zinc-Ribbon APORC_1788 PF00425 chorismate binding enzyme APORC_1789 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APORC_1789 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APORC_1791 PF00857 Isochorismatase family APORC_1792 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APORC_1792 PF03900 Porphobilinogen deaminase, C-terminal domain APORC_1794 PF12170 DNA polymerase III tau subunit V interacting with alpha APORC_1794 PF12169 DNA polymerase III subunits gamma and tau domain III APORC_1795 PF01177 Asp/Glu/Hydantoin racemase APORC_1796 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APORC_1796 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APORC_1797 PF07497 Rho termination factor, RNA-binding domain APORC_1797 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APORC_1797 PF07498 Rho termination factor, N-terminal domain APORC_1798 PF10417 C-terminal domain of 1-Cys peroxiredoxin APORC_1798 PF00578 AhpC/TSA family APORC_1800 PF00334 Nucleoside diphosphate kinase APORC_1802 PF01783 Ribosomal L32p protein family APORC_1803 PF02504 Fatty acid synthesis protein APORC_1804 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APORC_1804 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APORC_1806 PF00350 Dynamin family APORC_1807 PF00350 Dynamin family APORC_1808 PF13085 2Fe-2S iron-sulfur cluster binding domain APORC_1808 PF13183 4Fe-4S dicluster domain APORC_1809 PF02910 Fumarate reductase flavoprotein C-term APORC_1809 PF00890 FAD binding domain APORC_1810 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APORC_1811 PF00361 Proton-conducting membrane transporter APORC_1812 PF00361 Proton-conducting membrane transporter APORC_1812 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APORC_1813 PF00361 Proton-conducting membrane transporter APORC_1813 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APORC_1814 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APORC_1815 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APORC_1816 PF12838 4Fe-4S dicluster domain APORC_1817 PF00146 NADH dehydrogenase APORC_1818 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APORC_1818 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APORC_1818 PF00384 Molybdopterin oxidoreductase APORC_1819 PF00285 Citrate synthase, C-terminal domain APORC_1820 PF10531 SLBB domain APORC_1820 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APORC_1820 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APORC_1822 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APORC_1822 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APORC_1823 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APORC_1824 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APORC_1825 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APORC_1826 PF12821 Threonine/Serine exporter, ThrE APORC_1826 PF06738 Putative threonine/serine exporter APORC_1827 PF06738 Putative threonine/serine exporter APORC_1829 PF03309 Type III pantothenate kinase APORC_1830 PF01634 ATP phosphoribosyltransferase APORC_1832 PF02203 Tar ligand binding domain homologue APORC_1832 PF00672 HAMP domain APORC_1832 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_1833 PF00990 Diguanylate cyclase, GGDEF domain APORC_1833 PF08448 PAS fold APORC_1837 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APORC_1837 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APORC_1840 PF00285 Citrate synthase, C-terminal domain APORC_1841 PF00330 Aconitase family (aconitate hydratase) APORC_1841 PF00694 Aconitase C-terminal domain APORC_1842 PF04303 PrpF protein APORC_1843 PF01464 Transglycosylase SLT domain APORC_1843 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APORC_1844 PF02887 Pyruvate kinase, alpha/beta domain APORC_1844 PF00391 PEP-utilising enzyme, mobile domain APORC_1844 PF00224 Pyruvate kinase, barrel domain APORC_1846 PF02021 Uncharacterised protein family UPF0102 APORC_1847 PF00155 Aminotransferase class I and II APORC_1848 PF00484 Carbonic anhydrase APORC_1850 PF04055 Radical SAM superfamily APORC_1852 PF04028 Domain of unknown function (DUF374) APORC_1853 PF04055 Radical SAM superfamily APORC_1853 PF01938 TRAM domain APORC_1853 PF00919 Uncharacterized protein family UPF0004 APORC_1855 PF08529 NusA N-terminal domain APORC_1855 PF13184 NusA-like KH domain APORC_1856 PF09190 DALR domain APORC_1856 PF01406 tRNA synthetases class I (C) catalytic domain APORC_1858 PF01084 Ribosomal protein S18 APORC_1863 PF12008 Type I restriction and modification enzyme - subunit R C terminal APORC_1863 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APORC_1863 PF18766 SWI2/SNF2 ATPase APORC_1869 PF12161 HsdM N-terminal domain APORC_1869 PF02384 N-6 DNA Methylase APORC_1870 PF01979 Amidohydrolase family APORC_1871 PF13427 Domain of unknown function (DUF4111) APORC_1871 PF01909 Nucleotidyltransferase domain APORC_1874 PF13276 HTH-like domain APORC_1874 PF00665 Integrase core domain APORC_1874 PF13333 Integrase core domain APORC_1877 PF07827 KNTase C-terminal domain APORC_1878 PF01979 Amidohydrolase family APORC_1882 PF14659 Phage integrase, N-terminal SAM-like domain APORC_1882 PF00589 Phage integrase family APORC_1883 PF00436 Single-strand binding protein family APORC_1884 PF01250 Ribosomal protein S6 APORC_1886 PF00773 RNB domain APORC_1887 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APORC_1887 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APORC_1890 PF00156 Phosphoribosyl transferase domain APORC_1890 PF13537 Glutamine amidotransferase domain APORC_1891 PF01113 Dihydrodipicolinate reductase, N-terminus APORC_1891 PF05173 Dihydrodipicolinate reductase, C-terminus APORC_1892 PF07992 Pyridine nucleotide-disulphide oxidoreductase APORC_1893 PF00085 Thioredoxin APORC_1894 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APORC_1894 PF02272 DHHA1 domain APORC_1894 PF01411 tRNA synthetases class II (A) APORC_1897 PF00989 PAS fold APORC_1897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APORC_1897 PF00672 HAMP domain APORC_1897 PF18698 Histidine kinase sensor domain APORC_1897 PF00512 His Kinase A (phospho-acceptor) domain APORC_1898 PF00486 Transcriptional regulatory protein, C terminal APORC_1898 PF00072 Response regulator receiver domain APORC_1899 PF17820 PDZ domain APORC_1899 PF13180 PDZ domain APORC_1900 PF00920 Dehydratase family APORC_1904 PF01258 Prokaryotic dksA/traR C4-type zinc finger APORC_1905 PF01142 tRNA pseudouridine synthase D (TruD) APORC_1906 PF15437 Plasminogen-binding protein pgbA C-terminal APORC_1908 PF03572 Peptidase family S41 APORC_1908 PF13180 PDZ domain APORC_1909 PF01259 SAICAR synthetase APORC_1910 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase APORC_1913 PF01553 Acyltransferase APORC_1914 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APORC_1915 PF02416 mttA/Hcf106 family APORC_1916 PF02416 mttA/Hcf106 family APORC_1917 PF00750 tRNA synthetases class I (R) APORC_1917 PF03485 Arginyl tRNA synthetase N terminal domain APORC_1917 PF05746 DALR anticodon binding domain APORC_1919 PF01467 Cytidylyltransferase-like APORC_1920 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APORC_1920 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APORC_1921 PF00162 Phosphoglycerate kinase APORC_1922 PF00121 Triosephosphate isomerase APORC_1924 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APORC_1924 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APORC_1925 PF01817 Chorismate mutase type II APORC_1925 PF00800 Prephenate dehydratase APORC_1925 PF01842 ACT domain APORC_1926 PF00155 Aminotransferase class I and II APORC_1927 PF02780 Transketolase, C-terminal domain APORC_1927 PF02779 Transketolase, pyrimidine binding domain APORC_1927 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APORC_1928 PF03150 Di-haem cytochrome c peroxidase APORC_1928 PF00034 Cytochrome c APORC_1929 PF02545 Maf-like protein APORC_1931 PF01914 MarC family integral membrane protein APORC_1933 PF00939 Sodium:sulfate symporter transmembrane region APORC_1935 PF11412 Disulphide bond corrector protein DsbC APORC_1935 PF02683 Cytochrome C biogenesis protein transmembrane region APORC_1935 PF00085 Thioredoxin APORC_1936 PF00085 Thioredoxin APORC_1937 PF18030 RimK PreATP-grasp domain APORC_1937 PF08443 RimK-like ATP-grasp domain APORC_1940 PF00563 EAL domain APORC_1940 PF08495 FIST N domain APORC_1940 PF10442 FIST C domain APORC_1940 PF00990 Diguanylate cyclase, GGDEF domain APORC_1941 PF02666 Phosphatidylserine decarboxylase APORC_1944 PF06725 3D domain APORC_1944 PF03562 MltA specific insert domain APORC_1945 PF00012 Hsp70 protein APORC_1946 PF01025 GrpE APORC_1948 PF00005 ABC transporter APORC_1951 PF13190 PDGLE domain APORC_1951 PF01891 Cobalt uptake substrate-specific transmembrane region APORC_1953 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA APORC_1954 PF02769 AIR synthase related protein, C-terminal domain APORC_1954 PF00586 AIR synthase related protein, N-terminal domain APORC_1957 PF01924 Hydrogenase formation hypA family APORC_1958 PF01455 HupF/HypC family APORC_1959 PF02492 CobW/HypB/UreG, nucleotide-binding domain APORC_1961 PF00708 Acylphosphatase APORC_1961 PF07503 HypF finger APORC_1961 PF01300 Telomere recombination APORC_1961 PF17788 HypF Kae1-like domain APORC_1963 PF01750 Hydrogenase maturation protease APORC_1964 PF01292 Prokaryotic cytochrome b561 APORC_1965 PF00374 Nickel-dependent hydrogenase APORC_1966 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APORC_1966 PF10518 TAT (twin-arginine translocation) pathway signal sequence APORC_1966 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal APORC_1967 PF01416 tRNA pseudouridine synthase APORC_1970 PF01255 Putative undecaprenyl diphosphate synthase APORC_1971 PF02441 Flavoprotein APORC_1971 PF04127 DNA / pantothenate metabolism flavoprotein APORC_1972 PF12804 MobA-like NTP transferase domain APORC_1972 PF14602 Hexapeptide repeat of succinyl-transferase APORC_1974 PF00271 Helicase conserved C-terminal domain APORC_1974 PF17191 RecG wedge domain APORC_1974 PF00270 DEAD/DEAH box helicase APORC_1975 PF05958 tRNA (Uracil-5-)-methyltransferase APORC_1976 PF00700 Bacterial flagellin C-terminal helical region APORC_1976 PF00669 Bacterial flagellin N-terminal helical region APORC_1976 PF07196 Flagellin hook IN motif APORC_1977 PF00700 Bacterial flagellin C-terminal helical region APORC_1977 PF00669 Bacterial flagellin N-terminal helical region APORC_1977 PF07196 Flagellin hook IN motif APORC_1979 PF02585 GlcNAc-PI de-N-acetylase APORC_1981 PF03102 NeuB family APORC_1981 PF08666 SAF domain APORC_1982 PF13302 Acetyltransferase (GNAT) domain APORC_1984 PF02348 Cytidylyltransferase APORC_1985 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APORC_1986 PF02719 Polysaccharide biosynthesis protein APORC_1988 PF00154 recA bacterial DNA recombination protein APORC_1989 PF00209 Sodium:neurotransmitter symporter family APORC_1990 PF01261 Xylose isomerase-like TIM barrel APORC_1992 PF01740 STAS domain APORC_1992 PF00916 Sulfate permease family APORC_1994 PF16450 Proteasomal ATPase OB C-terminal domain APORC_1994 PF17758 Proteasomal ATPase OB N-terminal domain APORC_1994 PF00004 ATPase family associated with various cellular activities (AAA) APORC_1996 PF02621 Menaquinone biosynthesis APORC_1997 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APORC_1999 PF01131 DNA topoisomerase APORC_1999 PF13368 Topoisomerase C-terminal repeat APORC_1999 PF01751 Toprim domain APORC_2001 PF04055 Radical SAM superfamily APORC_2001 PF06968 Biotin and Thiamin Synthesis associated domain APORC_2002 PF00113 Enolase, C-terminal TIM barrel domain APORC_2002 PF03952 Enolase, N-terminal domain APORC_2005 PF13932 GidA associated domain APORC_2005 PF01134 Glucose inhibited division protein A APORC_2006 PF00677 Lumazine binding domain APORC_2007 PF03448 MgtE intracellular N domain APORC_2007 PF01769 Divalent cation transporter APORC_2007 PF00571 CBS domain APORC_2010 PF06689 ClpX C4-type zinc finger APORC_2010 PF10431 C-terminal, D2-small domain, of ClpB protein APORC_2010 PF07724 AAA domain (Cdc48 subfamily) APORC_2011 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APORC_2011 PF00132 Bacterial transferase hexapeptide (six repeats) APORC_2012 PF07977 FabA-like domain APORC_2013 PF02684 Lipid-A-disaccharide synthetase APORC_2014 PF02677 Epoxyqueuosine reductase QueH APORC_2021 PF01027 Inhibitor of apoptosis-promoting Bax1 APORC_2023 PF03840 Preprotein translocase SecG subunit APORC_2024 PF01765 Ribosome recycling factor APORC_2025 PF00156 Phosphoribosyl transferase domain APORC_2028 PF01212 Beta-eliminating lyase APORC_2030 PF01544 CorA-like Mg2+ transporter protein APORC_2031 PF03883 Peroxide stress protein YaaA APORC_2032 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) APORC_2032 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 APORC_2033 PF01914 MarC family integral membrane protein APORC_2037 PF03167 Uracil DNA glycosylase superfamily APORC_2038 PF00171 Aldehyde dehydrogenase family APORC_2039 PF00205 Thiamine pyrophosphate enzyme, central domain APORC_2039 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APORC_2039 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APORC_2040 PF13419 Haloacid dehalogenase-like hydrolase APORC_2041 PF18364 Molybdopterin oxidoreductase N-terminal domain APORC_2041 PF01568 Molydopterin dinucleotide binding domain APORC_2041 PF00384 Molybdopterin oxidoreductase APORC_2043 PF00210 Ferritin-like domain APORC_2044 PF07690 Major Facilitator Superfamily APORC_2046 PF00990 Diguanylate cyclase, GGDEF domain APORC_2046 PF05230 MASE2 domain APORC_2047 PF00529 HlyD membrane-fusion protein of T1SS APORC_2047 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APORC_2048 PF00873 AcrB/AcrD/AcrF family APORC_2049 PF02321 Outer membrane efflux protein APORC_2050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APORC_2050 PF00672 HAMP domain APORC_2050 PF02203 Tar ligand binding domain homologue APORC_2052 PF01053 Cys/Met metabolism PLP-dependent enzyme APORC_2053 PF02082 Transcriptional regulator APORC_2054 PF00291 Pyridoxal-phosphate dependent enzyme APORC_2056 PF01507 Phosphoadenosine phosphosulfate reductase family APORC_2057 PF01507 Phosphoadenosine phosphosulfate reductase family APORC_2058 PF00009 Elongation factor Tu GTP binding domain APORC_2060 PF00291 Pyridoxal-phosphate dependent enzyme APORC_2062 PF00266 Aminotransferase class-V APORC_2064 PF00149 Calcineurin-like phosphoesterase APORC_2065 PF02630 SCO1/SenC APORC_2068 PF10442 FIST C domain APORC_2068 PF08495 FIST N domain APORC_2068 PF00563 EAL domain APORC_2068 PF00990 Diguanylate cyclase, GGDEF domain APORC_2069 PF00581 Rhodanese-like domain APORC_2069 PF00899 ThiF family APORC_2071 PF04143 Sulphur transport APORC_2072 PF01206 Sulfurtransferase TusA APORC_2075 PF02511 Thymidylate synthase complementing protein APORC_2076 PF03458 UPF0126 domain APORC_2078 PF16226 Domain of unknown function (DUF4885) APORC_2080 PF02911 Formyl transferase, C-terminal domain APORC_2080 PF00551 Formyl transferase APORC_2081 PF02075 Crossover junction endodeoxyribonuclease RuvC