locus-tag class description NJU99_00005 PF00308 Bacterial dnaA protein NJU99_00005 PF08299 Bacterial dnaA protein helix-turn-helix NJU99_00005 PF11638 DnaA N-terminal domain NJU99_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NJU99_00010 PF02767 DNA polymerase III beta subunit, central domain NJU99_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NJU99_00015 PF00204 DNA gyrase B NJU99_00015 PF00986 DNA gyrase B subunit, carboxyl terminus NJU99_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_00015 PF01751 Toprim domain NJU99_00030 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_00045 PF14489 QueF-like protein NJU99_00065 PF00849 RNA pseudouridylate synthase NJU99_00070 PF10397 Adenylosuccinate lyase C-terminus NJU99_00070 PF00206 Lyase NJU99_00075 PF00317 Ribonucleotide reductase, all-alpha domain NJU99_00075 PF03477 ATP cone domain NJU99_00075 PF02867 Ribonucleotide reductase, barrel domain NJU99_00080 PF00268 Ribonucleotide reductase, small chain NJU99_00115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NJU99_00125 PF03063 Prismane/CO dehydrogenase family NJU99_00130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_00130 PF00512 His Kinase A (phospho-acceptor) domain NJU99_00130 PF00989 PAS fold NJU99_00145 PF13488 Glycine zipper NJU99_00145 PF00691 OmpA family NJU99_00165 PF01451 Low molecular weight phosphotyrosine protein phosphatase NJU99_00170 PF00795 Carbon-nitrogen hydrolase NJU99_00175 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NJU99_00175 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NJU99_00175 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NJU99_00175 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NJU99_00180 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NJU99_00180 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NJU99_00185 PF12833 Helix-turn-helix domain NJU99_00185 PF00072 Response regulator receiver domain NJU99_00190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_00190 PF08447 PAS fold NJU99_00190 PF08448 PAS fold NJU99_00195 PF13746 4Fe-4S dicluster domain NJU99_00195 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NJU99_00195 PF12801 4Fe-4S binding domain NJU99_00200 PF01810 LysE type translocator NJU99_00220 PF00171 Aldehyde dehydrogenase family NJU99_00225 PF00107 Zinc-binding dehydrogenase NJU99_00225 PF08240 Alcohol dehydrogenase GroES-like domain NJU99_00230 PF01638 HxlR-like helix-turn-helix NJU99_00235 PF03649 Uncharacterised protein family (UPF0014) NJU99_00255 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NJU99_00255 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NJU99_00260 PF02934 GatB/GatE catalytic domain NJU99_00260 PF02637 GatB domain NJU99_00270 PF01565 FAD binding domain NJU99_00270 PF02913 FAD linked oxidases, C-terminal domain NJU99_00275 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NJU99_00280 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NJU99_00285 PF03480 Bacterial extracellular solute-binding protein, family 7 NJU99_00290 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_00295 PF01575 MaoC like domain NJU99_00305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NJU99_00305 PF02770 Acyl-CoA dehydrogenase, middle domain NJU99_00305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NJU99_00310 PF02754 Cysteine-rich domain NJU99_00310 PF13183 4Fe-4S dicluster domain NJU99_00310 PF02665 Nitrate reductase gamma subunit NJU99_00315 PF01012 Electron transfer flavoprotein domain NJU99_00320 PF01012 Electron transfer flavoprotein domain NJU99_00320 PF00766 Electron transfer flavoprotein FAD-binding domain NJU99_00325 PF05724 Thiopurine S-methyltransferase (TPMT) NJU99_00330 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NJU99_00330 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NJU99_00335 PF03061 Thioesterase superfamily NJU99_00340 PF03061 Thioesterase superfamily NJU99_00345 PF01144 Coenzyme A transferase NJU99_00350 PF01144 Coenzyme A transferase NJU99_00355 PF02803 Thiolase, C-terminal domain NJU99_00355 PF00108 Thiolase, N-terminal domain NJU99_00360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_00360 PF00512 His Kinase A (phospho-acceptor) domain NJU99_00360 PF00989 PAS fold NJU99_00360 PF13188 PAS domain NJU99_00360 PF13426 PAS domain NJU99_00365 PF00072 Response regulator receiver domain NJU99_00365 PF00486 Transcriptional regulatory protein, C terminal NJU99_00375 PF00072 Response regulator receiver domain NJU99_00375 PF00486 Transcriptional regulatory protein, C terminal NJU99_00380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_00380 PF00989 PAS fold NJU99_00380 PF00512 His Kinase A (phospho-acceptor) domain NJU99_00385 PF02589 LUD domain NJU99_00390 PF02589 LUD domain NJU99_00390 PF13183 4Fe-4S dicluster domain NJU99_00390 PF11870 Domain of unknown function (DUF3390) NJU99_00395 PF02754 Cysteine-rich domain NJU99_00410 PF00364 Biotin-requiring enzyme NJU99_00415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NJU99_00415 PF02785 Biotin carboxylase C-terminal domain NJU99_00415 PF00289 Biotin carboxylase, N-terminal domain NJU99_00420 PF00271 Helicase conserved C-terminal domain NJU99_00420 PF00270 DEAD/DEAH box helicase NJU99_00430 PF01384 Phosphate transporter family NJU99_00435 PF00072 Response regulator receiver domain NJU99_00435 PF00486 Transcriptional regulatory protein, C terminal NJU99_00445 PF13537 Glutamine amidotransferase domain NJU99_00445 PF00733 Asparagine synthase NJU99_00455 PF00881 Nitroreductase family NJU99_00460 PF03480 Bacterial extracellular solute-binding protein, family 7 NJU99_00465 PF13183 4Fe-4S dicluster domain NJU99_00465 PF13085 2Fe-2S iron-sulfur cluster binding domain NJU99_00470 PF00890 FAD binding domain NJU99_00470 PF02910 Fumarate reductase flavoprotein C-term NJU99_00480 PF13638 PIN domain NJU99_00480 PF02562 PhoH-like protein NJU99_00485 PF03653 Uncharacterised protein family (UPF0093) NJU99_00490 PF12002 MgsA AAA+ ATPase C terminal NJU99_00490 PF05496 Holliday junction DNA helicase RuvB P-loop domain NJU99_00490 PF16193 AAA C-terminal domain NJU99_00490 PF01661 Macro domain NJU99_00495 PF01479 S4 domain NJU99_00495 PF00849 RNA pseudouridylate synthase NJU99_00500 PF00571 CBS domain NJU99_00500 PF01380 SIS domain NJU99_00505 PF00753 Metallo-beta-lactamase superfamily NJU99_00505 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NJU99_00505 PF17770 Ribonuclease J C-terminal domain NJU99_00510 PF00398 Ribosomal RNA adenine dimethylase NJU99_00515 PF00977 Histidine biosynthesis protein NJU99_00530 PF04055 Radical SAM superfamily NJU99_00535 PF00749 tRNA synthetases class I (E and Q), catalytic domain NJU99_00540 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NJU99_00545 PF02203 Tar ligand binding domain homologue NJU99_00545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_00545 PF00672 HAMP domain NJU99_00550 PF00486 Transcriptional regulatory protein, C terminal NJU99_00550 PF00072 Response regulator receiver domain NJU99_00555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_00575 PF00873 AcrB/AcrD/AcrF family NJU99_00580 PF04264 YceI-like domain NJU99_00590 PF05114 Protein of unknown function (DUF692) NJU99_00600 PF07196 Flagellin hook IN motif NJU99_00600 PF00460 Flagella basal body rod protein NJU99_00605 PF00700 Bacterial flagellin C-terminal helical region NJU99_00605 PF07196 Flagellin hook IN motif NJU99_00605 PF00669 Bacterial flagellin N-terminal helical region NJU99_00610 PF00486 Transcriptional regulatory protein, C terminal NJU99_00610 PF00072 Response regulator receiver domain NJU99_00615 PF00672 HAMP domain NJU99_00615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_00615 PF00512 His Kinase A (phospho-acceptor) domain NJU99_00615 PF13426 PAS domain NJU99_00630 PF01554 MatE NJU99_00635 PF01842 ACT domain NJU99_00635 PF00742 Homoserine dehydrogenase NJU99_00635 PF03447 Homoserine dehydrogenase, NAD binding domain NJU99_00640 PF00155 Aminotransferase class I and II NJU99_00650 PF00588 SpoU rRNA Methylase family NJU99_00650 PF08032 RNA 2'-O ribose methyltransferase substrate binding NJU99_00665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NJU99_00670 PF01197 Ribosomal protein L31 NJU99_00695 PF01040 UbiA prenyltransferase family NJU99_00700 PF00990 Diguanylate cyclase, GGDEF domain NJU99_00745 PF09308 LuxQ, periplasmic NJU99_00745 PF00072 Response regulator receiver domain NJU99_00745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_00745 PF00512 His Kinase A (phospho-acceptor) domain NJU99_00760 PF00563 EAL domain NJU99_00760 PF08495 FIST N domain NJU99_00760 PF10442 FIST C domain NJU99_00760 PF00990 Diguanylate cyclase, GGDEF domain NJU99_00765 PF08448 PAS fold NJU99_00765 PF01339 CheB methylesterase NJU99_00765 PF01739 CheR methyltransferase, SAM binding domain NJU99_00765 PF03705 CheR methyltransferase, all-alpha domain NJU99_00770 PF03707 Bacterial signalling protein N terminal repeat NJU99_00770 PF00563 EAL domain NJU99_00770 PF00990 Diguanylate cyclase, GGDEF domain NJU99_00820 PF00437 Type II/IV secretion system protein NJU99_00850 PF02222 ATP-grasp domain NJU99_00860 PF01678 Diaminopimelate epimerase NJU99_00865 PF01121 Dephospho-CoA kinase NJU99_00870 PF17284 Spermidine synthase tetramerisation domain NJU99_00875 PF00586 AIR synthase related protein, N-terminal domain NJU99_00875 PF02769 AIR synthase related protein, C-terminal domain NJU99_00880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NJU99_00880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NJU99_00885 PF02678 Pirin NJU99_00885 PF17954 Quercetinase C-terminal cupin domain NJU99_00895 PF04264 YceI-like domain NJU99_00900 PF01047 MarR family NJU99_00905 PF01810 LysE type translocator NJU99_00915 PF00266 Aminotransferase class-V NJU99_00920 PF13393 Histidyl-tRNA synthetase NJU99_00925 PF00709 Adenylosuccinate synthetase NJU99_00935 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NJU99_00935 PF00117 Glutamine amidotransferase class-I NJU99_00950 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NJU99_00950 PF02542 YgbB family NJU99_00960 PF01964 Radical SAM ThiC family NJU99_00970 PF01883 Iron-sulfur cluster assembly protein NJU99_00970 PF10609 NUBPL iron-transfer P-loop NTPase NJU99_00980 PF01502 Phosphoribosyl-AMP cyclohydrolase NJU99_00980 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NJU99_00995 PF01063 Amino-transferase class IV NJU99_01010 PF02574 Homocysteine S-methyltransferase NJU99_01010 PF00809 Pterin binding enzyme NJU99_01010 PF02310 B12 binding domain NJU99_01010 PF02607 B12 binding domain NJU99_01010 PF02965 Vitamin B12 dependent methionine synthase, activation domain NJU99_01040 PF02743 Cache domain NJU99_01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_01040 PF00512 His Kinase A (phospho-acceptor) domain NJU99_01055 PF04107 Glutamate-cysteine ligase family 2(GCS2) NJU99_01065 PF01266 FAD dependent oxidoreductase NJU99_01065 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NJU99_01075 PF02664 S-Ribosylhomocysteinase (LuxS) NJU99_01095 PF05145 Transition state regulatory protein AbrB NJU99_01100 PF18698 Histidine kinase sensor domain NJU99_01100 PF00512 His Kinase A (phospho-acceptor) domain NJU99_01100 PF00672 HAMP domain NJU99_01100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_01105 PF00072 Response regulator receiver domain NJU99_01105 PF00486 Transcriptional regulatory protein, C terminal NJU99_01110 PF01970 Tripartite tricarboxylate transporter TctA family NJU99_01125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJU99_01130 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NJU99_01130 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NJU99_01140 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NJU99_01145 PF13419 Haloacid dehalogenase-like hydrolase NJU99_01150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJU99_01155 PF00380 Ribosomal protein S9/S16 NJU99_01160 PF00572 Ribosomal protein L13 NJU99_01165 PF00512 His Kinase A (phospho-acceptor) domain NJU99_01165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_01165 PF00672 HAMP domain NJU99_01170 PF00486 Transcriptional regulatory protein, C terminal NJU99_01170 PF00072 Response regulator receiver domain NJU99_01185 PF00005 ABC transporter NJU99_01190 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_01195 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_01200 PF00563 EAL domain NJU99_01200 PF12792 CSS motif domain associated with EAL NJU99_01215 PF00472 RF-1 domain NJU99_01215 PF03462 PCRF domain NJU99_01220 PF01649 Ribosomal protein S20 NJU99_01225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NJU99_01225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NJU99_01225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NJU99_01225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NJU99_01230 PF01252 Signal peptidase (SPase) II NJU99_01235 PF00330 Aconitase family (aconitate hydratase) NJU99_01240 PF12804 MobA-like NTP transferase domain NJU99_01245 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_01250 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_01250 PF10518 TAT (twin-arginine translocation) pathway signal sequence NJU99_01250 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding NJU99_01260 PF00453 Ribosomal protein L20 NJU99_01265 PF01632 Ribosomal protein L35 NJU99_01270 PF05198 Translation initiation factor IF-3, N-terminal domain NJU99_01270 PF00707 Translation initiation factor IF-3, C-terminal domain NJU99_01275 PF03129 Anticodon binding domain NJU99_01275 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NJU99_01275 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NJU99_01305 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NJU99_01305 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NJU99_01305 PF13288 DXP reductoisomerase C-terminal domain NJU99_01325 PF00814 Glycoprotease family NJU99_01330 PF01253 Translation initiation factor SUI1 NJU99_01335 PF01256 Carbohydrate kinase NJU99_01335 PF03853 YjeF-related protein N-terminus NJU99_01340 PF03091 CutA1 divalent ion tolerance protein NJU99_01345 PF05690 Thiazole biosynthesis protein ThiG NJU99_01410 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NJU99_01430 PF01142 tRNA pseudouridine synthase D (TruD) NJU99_01445 PF13180 PDZ domain NJU99_01445 PF03572 Peptidase family S41 NJU99_01450 PF01259 SAICAR synthetase NJU99_01455 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase NJU99_01470 PF01553 Acyltransferase NJU99_01475 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NJU99_01480 PF02416 mttA/Hcf106 family NJU99_01485 PF00750 tRNA synthetases class I (R) NJU99_01485 PF05746 DALR anticodon binding domain NJU99_01485 PF03485 Arginyl tRNA synthetase N terminal domain NJU99_01495 PF01467 Cytidylyltransferase-like NJU99_01500 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NJU99_01500 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NJU99_01505 PF00162 Phosphoglycerate kinase NJU99_01510 PF00121 Triosephosphate isomerase NJU99_01520 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NJU99_01520 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NJU99_01525 PF01842 ACT domain NJU99_01525 PF01817 Chorismate mutase type II NJU99_01525 PF00800 Prephenate dehydratase NJU99_01530 PF00155 Aminotransferase class I and II NJU99_01535 PF02780 Transketolase, C-terminal domain NJU99_01535 PF02779 Transketolase, pyrimidine binding domain NJU99_01535 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NJU99_01555 PF02545 Maf-like protein NJU99_01565 PF01817 Chorismate mutase type II NJU99_01565 PF00800 Prephenate dehydratase NJU99_01570 PF00180 Isocitrate/isopropylmalate dehydrogenase NJU99_01575 PF00106 short chain dehydrogenase NJU99_01580 PF00072 Response regulator receiver domain NJU99_01585 PF07568 Histidine kinase NJU99_01585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_01585 PF12282 Signal transduction histidine kinase NJU99_01595 PF02332 Methane/Phenol/Toluene Hydroxylase NJU99_01605 PF02332 Methane/Phenol/Toluene Hydroxylase NJU99_01605 PF04945 YHS domain NJU99_01610 PF04663 Phenol hydroxylase conserved region NJU99_01615 PF00970 Oxidoreductase FAD-binding domain NJU99_01615 PF00111 2Fe-2S iron-sulfur cluster binding domain NJU99_01615 PF00175 Oxidoreductase NAD-binding domain NJU99_01620 PF00111 2Fe-2S iron-sulfur cluster binding domain NJU99_01620 PF00175 Oxidoreductase NAD-binding domain NJU99_01620 PF00970 Oxidoreductase FAD-binding domain NJU99_01625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NJU99_01630 PF03928 Haem-degrading NJU99_01635 PF00171 Aldehyde dehydrogenase family NJU99_01645 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation NJU99_01645 PF01118 Semialdehyde dehydrogenase, NAD binding domain NJU99_01650 PF00682 HMGL-like NJU99_01650 PF07836 DmpG-like communication domain NJU99_01660 PF01361 Tautomerase enzyme NJU99_01665 PF00296 Luciferase-like monooxygenase NJU99_01670 PF00561 alpha/beta hydrolase fold NJU99_01695 PF00877 NlpC/P60 family NJU99_01700 PF00877 NlpC/P60 family NJU99_01730 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NJU99_01730 PF01411 tRNA synthetases class II (A) NJU99_01730 PF02272 DHHA1 domain NJU99_01735 PF00085 Thioredoxin NJU99_01740 PF00085 Thioredoxin NJU99_01745 PF00939 Sodium:sulfate symporter transmembrane region NJU99_01750 PF00072 Response regulator receiver domain NJU99_01750 PF00512 His Kinase A (phospho-acceptor) domain NJU99_01750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_01750 PF13426 PAS domain NJU99_01750 PF08448 PAS fold NJU99_01755 PF00072 Response regulator receiver domain NJU99_01755 PF00486 Transcriptional regulatory protein, C terminal NJU99_01760 PF01235 Sodium:alanine symporter family NJU99_01765 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_01770 PF01113 Dihydrodipicolinate reductase, N-terminus NJU99_01770 PF05173 Dihydrodipicolinate reductase, C-terminus NJU99_01775 PF00156 Phosphoribosyl transferase domain NJU99_01775 PF13537 Glutamine amidotransferase domain NJU99_01780 PF16199 Radical_SAM C-terminal domain NJU99_01780 PF04055 Radical SAM superfamily NJU99_01785 PF03466 LysR substrate binding domain NJU99_01785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJU99_01790 PF00580 UvrD/REP helicase N-terminal domain NJU99_01790 PF13361 UvrD-like helicase C-terminal domain NJU99_01795 PF01509 TruB family pseudouridylate synthase (N terminal domain) NJU99_01800 PF00288 GHMP kinases N terminal domain NJU99_01805 PF01668 SmpB protein NJU99_01810 PF00115 Cytochrome C and Quinol oxidase polypeptide I NJU99_01825 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NJU99_01825 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NJU99_01850 PF03462 PCRF domain NJU99_01850 PF00472 RF-1 domain NJU99_01870 PF02660 Glycerol-3-phosphate acyltransferase NJU99_01875 PF02445 Quinolinate synthetase A protein NJU99_01880 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NJU99_01880 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NJU99_01895 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NJU99_01905 PF00288 GHMP kinases N terminal domain NJU99_01905 PF08544 GHMP kinases C terminal NJU99_01915 PF00009 Elongation factor Tu GTP binding domain NJU99_01915 PF11987 Translation-initiation factor 2 NJU99_01915 PF04760 Translation initiation factor IF-2, N-terminal region NJU99_01920 PF02033 Ribosome-binding factor A NJU99_01925 PF02576 RimP N-terminal domain NJU99_01930 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NJU99_01930 PF01872 RibD C-terminal domain NJU99_01935 PF01132 Elongation factor P (EF-P) OB domain NJU99_01935 PF08207 Elongation factor P (EF-P) KOW-like domain NJU99_01935 PF09285 Elongation factor P, C-terminal NJU99_01940 PF01842 ACT domain NJU99_01940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJU99_01940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NJU99_01945 PF00575 S1 RNA binding domain NJU99_01950 PF02401 LytB protein NJU99_01955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NJU99_01960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NJU99_01960 PF03147 Ferredoxin-fold anticodon binding domain NJU99_01960 PF03484 tRNA synthetase B5 domain NJU99_01960 PF01588 Putative tRNA binding domain NJU99_01965 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NJU99_01965 PF01409 tRNA synthetases class II core domain (F) NJU99_01970 PF01230 HIT domain NJU99_01975 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NJU99_01980 PF00109 Beta-ketoacyl synthase, N-terminal domain NJU99_01980 PF02801 Beta-ketoacyl synthase, C-terminal domain NJU99_01985 PF00550 Phosphopantetheine attachment site NJU99_01995 PF04055 Radical SAM superfamily NJU99_02005 PF06508 Queuosine biosynthesis protein QueC NJU99_02010 PF00994 Probable molybdopterin binding domain NJU99_02010 PF03454 MoeA C-terminal region (domain IV) NJU99_02010 PF03453 MoeA N-terminal region (domain I and II) NJU99_02020 PF04452 RNA methyltransferase NJU99_02035 PF00032 Cytochrome b(C-terminal)/b6/petD NJU99_02035 PF00033 Cytochrome b/b6/petB NJU99_02040 PF00355 Rieske [2Fe-2S] domain NJU99_02040 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NJU99_02045 PF00291 Pyridoxal-phosphate dependent enzyme NJU99_02050 PF00696 Amino acid kinase family NJU99_02055 PF00990 Diguanylate cyclase, GGDEF domain NJU99_02060 PF00580 UvrD/REP helicase N-terminal domain NJU99_02060 PF13361 UvrD-like helicase C-terminal domain NJU99_02070 PF00119 ATP synthase A chain NJU99_02075 PF00291 Pyridoxal-phosphate dependent enzyme NJU99_02075 PF13291 ACT domain NJU99_02080 PF08267 Cobalamin-independent synthase, N-terminal domain NJU99_02080 PF01717 Cobalamin-independent synthase, Catalytic domain NJU99_02090 PF01746 tRNA (Guanine-1)-methyltransferase NJU99_02095 PF01245 Ribosomal protein L19 NJU99_02130 PF02653 Branched-chain amino acid transport system / permease component NJU99_02135 PF02653 Branched-chain amino acid transport system / permease component NJU99_02135 PF11862 Domain of unknown function (DUF3382) NJU99_02140 PF00005 ABC transporter NJU99_02140 PF12399 Branched-chain amino acid ATP-binding cassette transporter NJU99_02145 PF00005 ABC transporter NJU99_02150 PF00171 Aldehyde dehydrogenase family NJU99_02170 PF03309 Type III pantothenate kinase NJU99_02175 PF01634 ATP phosphoribosyltransferase NJU99_02195 PF00672 HAMP domain NJU99_02195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_02195 PF18698 Histidine kinase sensor domain NJU99_02195 PF00512 His Kinase A (phospho-acceptor) domain NJU99_02200 PF00486 Transcriptional regulatory protein, C terminal NJU99_02200 PF00072 Response regulator receiver domain NJU99_02210 PF00664 ABC transporter transmembrane region NJU99_02210 PF00005 ABC transporter NJU99_02210 PF03412 Peptidase C39 family NJU99_02230 PF00990 Diguanylate cyclase, GGDEF domain NJU99_02230 PF08448 PAS fold NJU99_02235 PF00579 tRNA synthetases class I (W and Y) NJU99_02260 PF02472 Biopolymer transport protein ExbD/TolR NJU99_02265 PF01618 MotA/TolQ/ExbB proton channel family NJU99_02270 PF01618 MotA/TolQ/ExbB proton channel family NJU99_02280 PF02403 Seryl-tRNA synthetase N-terminal domain NJU99_02280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NJU99_02285 PF00990 Diguanylate cyclase, GGDEF domain NJU99_02285 PF10442 FIST C domain NJU99_02285 PF08495 FIST N domain NJU99_02285 PF00563 EAL domain NJU99_02290 PF05140 ResB-like family NJU99_02290 PF01578 Cytochrome C assembly protein NJU99_02295 PF02335 Cytochrome c552 NJU99_02300 PF03264 NapC/NirT cytochrome c family, N-terminal region NJU99_02310 PF08447 PAS fold NJU99_02310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_02330 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NJU99_02335 PF00037 4Fe-4S binding domain NJU99_02335 PF12801 4Fe-4S binding domain NJU99_02340 PF12800 4Fe-4S binding domain NJU99_02340 PF12838 4Fe-4S dicluster domain NJU99_02345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NJU99_02345 PF00384 Molybdopterin oxidoreductase NJU99_02345 PF01568 Molydopterin dinucleotide binding domain NJU99_02355 PF00672 HAMP domain NJU99_02355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_02355 PF02203 Tar ligand binding domain homologue NJU99_02360 PF03313 Serine dehydratase alpha chain NJU99_02360 PF03315 Serine dehydratase beta chain NJU99_02365 PF00005 ABC transporter NJU99_02370 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_02375 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_02385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NJU99_02385 PF14824 Sirohaem biosynthesis protein central NJU99_02385 PF10414 Sirohaem synthase dimerisation region NJU99_02400 PF02885 Glycosyl transferase family, helical bundle domain NJU99_02400 PF00591 Glycosyl transferase family, a/b domain NJU99_02405 PF06463 Molybdenum Cofactor Synthesis C NJU99_02405 PF04055 Radical SAM superfamily NJU99_02410 PF10442 FIST C domain NJU99_02410 PF00990 Diguanylate cyclase, GGDEF domain NJU99_02410 PF08495 FIST N domain NJU99_02410 PF00563 EAL domain NJU99_02425 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NJU99_02425 PF02222 ATP-grasp domain NJU99_02430 PF00731 AIR carboxylase NJU99_02435 PF00312 Ribosomal protein S15 NJU99_02455 PF01654 Cytochrome bd terminal oxidase subunit I NJU99_02465 PF13380 CoA binding domain NJU99_02470 PF08521 Two-component sensor kinase N-terminal NJU99_02470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_02470 PF00512 His Kinase A (phospho-acceptor) domain NJU99_02475 PF00072 Response regulator receiver domain NJU99_02475 PF00486 Transcriptional regulatory protein, C terminal NJU99_02480 PF00639 PPIC-type PPIASE domain NJU99_02485 PF01116 Fructose-bisphosphate aldolase class-II NJU99_02490 PF00883 Cytosol aminopeptidase family, catalytic domain NJU99_02490 PF02789 Cytosol aminopeptidase family, N-terminal domain NJU99_02510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NJU99_02520 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_02525 PF00005 ABC transporter NJU99_02555 PF00005 ABC transporter NJU99_02555 PF08402 TOBE domain NJU99_02565 PF01011 PQQ enzyme repeat NJU99_02565 PF13360 PQQ-like domain NJU99_02570 PF12706 Beta-lactamase superfamily domain NJU99_02575 PF03070 TENA/THI-4/PQQC family NJU99_02580 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NJU99_02585 PF04055 Radical SAM superfamily NJU99_02585 PF13186 Iron-sulfur cluster-binding domain NJU99_02595 PF12833 Helix-turn-helix domain NJU99_02600 PF00486 Transcriptional regulatory protein, C terminal NJU99_02600 PF00072 Response regulator receiver domain NJU99_02605 PF13493 Domain of unknown function (DUF4118) NJU99_02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_02605 PF00512 His Kinase A (phospho-acceptor) domain NJU99_02605 PF02702 Osmosensitive K+ channel His kinase sensor domain NJU99_02610 PF00171 Aldehyde dehydrogenase family NJU99_02625 PF01618 MotA/TolQ/ExbB proton channel family NJU99_02635 PF00672 HAMP domain NJU99_02635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_02635 PF17200 Single Cache domain 2 NJU99_02640 PF01202 Shikimate kinase NJU99_02645 PF00815 Histidinol dehydrogenase NJU99_02655 PF00348 Polyprenyl synthetase NJU99_02660 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NJU99_02660 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NJU99_02660 PF01488 Shikimate / quinate 5-dehydrogenase NJU99_02665 PF03129 Anticodon binding domain NJU99_02665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NJU99_02665 PF04073 Aminoacyl-tRNA editing domain NJU99_02670 PF05552 Conserved TM helix NJU99_02670 PF00924 Mechanosensitive ion channel NJU99_02675 PF01966 HD domain NJU99_02675 PF01743 Poly A polymerase head domain NJU99_02675 PF12627 Probable RNA and SrmB- binding site of polymerase A NJU99_02695 PF02699 Preprotein translocase subunit NJU99_02700 PF02355 Protein export membrane protein NJU99_02705 PF07549 SecD/SecF GG Motif NJU99_02705 PF02355 Protein export membrane protein NJU99_02730 PF00133 tRNA synthetases class I (I, L, M and V) NJU99_02730 PF13603 Leucyl-tRNA synthetase, Domain 2 NJU99_02730 PF09334 tRNA synthetases class I (M) NJU99_02740 PF08245 Mur ligase middle domain NJU99_02760 PF02254 TrkA-N domain NJU99_02760 PF00999 Sodium/hydrogen exchanger family NJU99_02775 PF03824 High-affinity nickel-transport protein NJU99_02820 PF02559 CarD-like/TRCF domain NJU99_02820 PF17757 UvrB interaction domain NJU99_02820 PF00270 DEAD/DEAH box helicase NJU99_02820 PF00271 Helicase conserved C-terminal domain NJU99_02820 PF03461 TRCF domain NJU99_02840 PF00563 EAL domain NJU99_02840 PF01590 GAF domain NJU99_02840 PF00990 Diguanylate cyclase, GGDEF domain NJU99_02840 PF00360 Phytochrome region NJU99_02855 PF02630 SCO1/SenC NJU99_02865 PF00072 Response regulator receiver domain NJU99_02865 PF00486 Transcriptional regulatory protein, C terminal NJU99_02880 PF00672 HAMP domain NJU99_02880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_02880 PF17202 Single cache domain 3 NJU99_02885 PF00072 Response regulator receiver domain NJU99_02885 PF08769 Sporulation initiation factor Spo0A C terminal NJU99_02895 PF00512 His Kinase A (phospho-acceptor) domain NJU99_02895 PF00989 PAS fold NJU99_02895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_02905 PF13277 YmdB-like protein NJU99_02925 PF01209 ubiE/COQ5 methyltransferase family NJU99_02930 PF02601 Exonuclease VII, large subunit NJU99_02930 PF13742 OB-fold nucleic acid binding domain NJU99_02935 PF01584 CheW-like domain NJU99_02940 PF00072 Response regulator receiver domain NJU99_02940 PF00486 Transcriptional regulatory protein, C terminal NJU99_02945 PF00072 Response regulator receiver domain NJU99_02950 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NJU99_02960 PF02261 Aspartate decarboxylase NJU99_02965 PF02575 YbaB/EbfC DNA-binding family NJU99_02970 PF00348 Polyprenyl synthetase NJU99_02975 PF00166 Chaperonin 10 Kd subunit NJU99_02980 PF00118 TCP-1/cpn60 chaperonin family NJU99_02985 PF02311 AraC-like ligand binding domain NJU99_02985 PF12833 Helix-turn-helix domain NJU99_02990 PF13536 Putative multidrug resistance efflux transporter NJU99_02995 PF08448 PAS fold NJU99_02995 PF08447 PAS fold NJU99_02995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_03005 PF00459 Inositol monophosphatase family NJU99_03015 PF01380 SIS domain NJU99_03020 PF02773 S-adenosylmethionine synthetase, C-terminal domain NJU99_03020 PF02772 S-adenosylmethionine synthetase, central domain NJU99_03020 PF00438 S-adenosylmethionine synthetase, N-terminal domain NJU99_03025 PF01039 Carboxyl transferase domain NJU99_03025 PF17848 Acetyl-coA carboxylase zinc finger domain NJU99_03030 PF02581 Thiamine monophosphate synthase NJU99_03035 PF02590 Predicted SPOUT methyltransferase NJU99_03040 PF01258 Prokaryotic dksA/traR C4-type zinc finger NJU99_03050 PF01207 Dihydrouridine synthase (Dus) NJU99_03060 PF17862 AAA+ lid domain NJU99_03060 PF00004 ATPase family associated with various cellular activities (AAA) NJU99_03060 PF01434 Peptidase family M41 NJU99_03070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_03070 PF08447 PAS fold NJU99_03070 PF08448 PAS fold NJU99_03075 PF11849 Domain of unknown function (DUF3369) NJU99_03080 PF00196 Bacterial regulatory proteins, luxR family NJU99_03080 PF00072 Response regulator receiver domain NJU99_03085 PF08447 PAS fold NJU99_03085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_03085 PF08448 PAS fold NJU99_03090 PF17158 Membrane-associated sensor, integral membrane domain NJU99_03090 PF00990 Diguanylate cyclase, GGDEF domain NJU99_03095 PF00682 HMGL-like NJU99_03095 PF08502 LeuA allosteric (dimerisation) domain NJU99_03100 PF07556 Protein of unknown function (DUF1538) NJU99_03115 PF01624 MutS domain I NJU99_03115 PF05188 MutS domain II NJU99_03115 PF05192 MutS domain III NJU99_03115 PF00488 MutS domain V NJU99_03115 PF05190 MutS family domain IV NJU99_03135 PF02899 Phage integrase, N-terminal SAM-like domain NJU99_03135 PF00589 Phage integrase family NJU99_03140 PF02384 N-6 DNA Methylase NJU99_03145 PF01420 Type I restriction modification DNA specificity domain NJU99_03165 PF11867 Domain of unknown function (DUF3387) NJU99_03165 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NJU99_03165 PF18766 SWI2/SNF2 ATPase NJU99_03200 PF00990 Diguanylate cyclase, GGDEF domain NJU99_03205 PF00977 Histidine biosynthesis protein NJU99_03210 PF01370 NAD dependent epimerase/dehydratase family NJU99_03210 PF08338 Domain of unknown function (DUF1731) NJU99_03215 PF00117 Glutamine amidotransferase class-I NJU99_03230 PF00679 Elongation factor G C-terminus NJU99_03230 PF00009 Elongation factor Tu GTP binding domain NJU99_03230 PF03144 Elongation factor Tu domain 2 NJU99_03230 PF06421 GTP-binding protein LepA C-terminus NJU99_03235 PF00691 OmpA family NJU99_03235 PF05736 OprF membrane domain NJU99_03240 PF00691 OmpA family NJU99_03240 PF05736 OprF membrane domain NJU99_03245 PF14572 Phosphoribosyl synthetase-associated domain NJU99_03245 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NJU99_03260 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NJU99_03265 PF01321 Creatinase/Prolidase N-terminal domain NJU99_03265 PF00557 Metallopeptidase family M24 NJU99_03270 PF01220 Dehydroquinase class II NJU99_03275 PF01979 Amidohydrolase family NJU99_03280 PF01343 Peptidase family S49 NJU99_03290 PF00871 Acetokinase family NJU99_03295 PF01515 Phosphate acetyl/butaryl transferase NJU99_03300 PF00929 Exonuclease NJU99_03300 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NJU99_03300 PF14579 Helix-hairpin-helix motif NJU99_03300 PF07733 Bacterial DNA polymerase III alpha NTPase domain NJU99_03300 PF11490 DNA polymerase III polC-type N-terminus II NJU99_03300 PF14480 DNA polymerase III polC-type N-terminus I NJU99_03300 PF02811 PHP domain NJU99_03310 PF00474 Sodium:solute symporter family NJU99_03320 PF00474 Sodium:solute symporter family NJU99_03330 PF14579 Helix-hairpin-helix motif NJU99_03330 PF02811 PHP domain NJU99_03330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NJU99_03330 PF01336 OB-fold nucleic acid binding domain NJU99_03330 PF00929 Exonuclease NJU99_03330 PF07733 Bacterial DNA polymerase III alpha NTPase domain NJU99_03330 PF11490 DNA polymerase III polC-type N-terminus II NJU99_03340 PF00474 Sodium:solute symporter family NJU99_03350 PF00486 Transcriptional regulatory protein, C terminal NJU99_03350 PF00072 Response regulator receiver domain NJU99_03355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_03355 PF00512 His Kinase A (phospho-acceptor) domain NJU99_03420 PF00994 Probable molybdopterin binding domain NJU99_03420 PF02464 Competence-damaged protein NJU99_03420 PF18146 Damage-inducible protein CinA KH domain NJU99_03425 PF06039 Malate:quinone oxidoreductase (Mqo) NJU99_03430 PF00133 tRNA synthetases class I (I, L, M and V) NJU99_03430 PF08264 Anticodon-binding domain of tRNA NJU99_03445 PF02875 Mur ligase family, glutamate ligase domain NJU99_03445 PF08245 Mur ligase middle domain NJU99_03465 PF01882 Protein of unknown function DUF58 NJU99_03470 PF17863 AAA lid domain NJU99_03470 PF07726 ATPase family associated with various cellular activities (AAA) NJU99_03475 PF12282 Signal transduction histidine kinase NJU99_03475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_03475 PF07568 Histidine kinase NJU99_03480 PF00072 Response regulator receiver domain NJU99_03500 PF00318 Ribosomal protein S2 NJU99_03505 PF00889 Elongation factor TS NJU99_03510 PF00005 ABC transporter NJU99_03520 PF00625 Guanylate kinase NJU99_03525 PF00563 EAL domain NJU99_03525 PF08495 FIST N domain NJU99_03525 PF10442 FIST C domain NJU99_03525 PF00990 Diguanylate cyclase, GGDEF domain NJU99_03530 PF00403 Heavy-metal-associated domain NJU99_03545 PF00005 ABC transporter NJU99_03550 PF00762 Ferrochelatase NJU99_03565 PF01875 Memo-like protein NJU99_03570 PF02698 DUF218 domain NJU99_03575 PF00005 ABC transporter NJU99_03580 PF00950 ABC 3 transport family NJU99_03585 PF00990 Diguanylate cyclase, GGDEF domain NJU99_03590 PF13509 S1 domain NJU99_03590 PF17783 CvfB-like winged helix domain NJU99_03595 PF08534 Redoxin NJU99_03600 PF00174 Oxidoreductase molybdopterin binding domain NJU99_03605 PF01794 Ferric reductase like transmembrane component NJU99_03610 PF13361 UvrD-like helicase C-terminal domain NJU99_03610 PF00580 UvrD/REP helicase N-terminal domain NJU99_03615 PF00133 tRNA synthetases class I (I, L, M and V) NJU99_03615 PF08264 Anticodon-binding domain of tRNA NJU99_03615 PF10458 Valyl tRNA synthetase tRNA binding arm NJU99_03625 PF08448 PAS fold NJU99_03625 PF00512 His Kinase A (phospho-acceptor) domain NJU99_03625 PF13188 PAS domain NJU99_03625 PF00072 Response regulator receiver domain NJU99_03625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_03630 PF00873 AcrB/AcrD/AcrF family NJU99_03645 PF07690 Major Facilitator Superfamily NJU99_03650 PF01725 Ham1 family NJU99_03670 PF03807 NADP oxidoreductase coenzyme F420-dependent NJU99_03670 PF14748 Pyrroline-5-carboxylate reductase dimerisation NJU99_03675 PF13525 Outer membrane lipoprotein NJU99_03680 PF02190 ATP-dependent protease La (LON) substrate-binding domain NJU99_03680 PF05362 Lon protease (S16) C-terminal proteolytic domain NJU99_03680 PF00004 ATPase family associated with various cellular activities (AAA) NJU99_03695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_03695 PF02203 Tar ligand binding domain homologue NJU99_03695 PF00672 HAMP domain NJU99_03705 PF00817 impB/mucB/samB family NJU99_03705 PF11799 impB/mucB/samB family C-terminal domain NJU99_03705 PF11798 IMS family HHH motif NJU99_03720 PF10442 FIST C domain NJU99_03720 PF08495 FIST N domain NJU99_03720 PF00563 EAL domain NJU99_03720 PF00990 Diguanylate cyclase, GGDEF domain NJU99_03725 PF08447 PAS fold NJU99_03725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_03730 PF02203 Tar ligand binding domain homologue NJU99_03730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_03730 PF00672 HAMP domain NJU99_03735 PF00924 Mechanosensitive ion channel NJU99_03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_03740 PF00512 His Kinase A (phospho-acceptor) domain NJU99_03740 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJU99_03750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_03750 PF00072 Response regulator receiver domain NJU99_03750 PF00512 His Kinase A (phospho-acceptor) domain NJU99_03750 PF08448 PAS fold NJU99_03750 PF13188 PAS domain NJU99_03755 PF02203 Tar ligand binding domain homologue NJU99_03755 PF00672 HAMP domain NJU99_03755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_03760 PF00137 ATP synthase subunit C NJU99_03795 PF03150 Di-haem cytochrome c peroxidase NJU99_03820 PF13533 Biotin-lipoyl like NJU99_03825 PF00873 AcrB/AcrD/AcrF family NJU99_03830 PF00375 Sodium:dicarboxylate symporter family NJU99_03835 PF01734 Patatin-like phospholipase NJU99_03850 PF02311 AraC-like ligand binding domain NJU99_03850 PF12833 Helix-turn-helix domain NJU99_03855 PF06965 Na+/H+ antiporter 1 NJU99_03870 PF03824 High-affinity nickel-transport protein NJU99_03885 PF00005 ABC transporter NJU99_03890 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_03895 PF00005 ABC transporter NJU99_03900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NJU99_03900 PF00384 Molybdopterin oxidoreductase NJU99_03900 PF01568 Molydopterin dinucleotide binding domain NJU99_03905 PF18267 Rubredoxin NAD+ reductase C-terminal domain NJU99_03905 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_03905 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NJU99_03905 PF04324 BFD-like [2Fe-2S] binding domain NJU99_03905 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NJU99_03915 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NJU99_03920 PF01053 Cys/Met metabolism PLP-dependent enzyme NJU99_03925 PF01053 Cys/Met metabolism PLP-dependent enzyme NJU99_03935 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NJU99_03945 PF16295 Tetracyclin repressor-like, C-terminal domain NJU99_03945 PF00440 Bacterial regulatory proteins, tetR family NJU99_03955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJU99_03960 PF00873 AcrB/AcrD/AcrF family NJU99_03970 PF00892 EamA-like transporter family NJU99_04000 PF06965 Na+/H+ antiporter 1 NJU99_04005 PF00072 Response regulator receiver domain NJU99_04005 PF00486 Transcriptional regulatory protein, C terminal NJU99_04015 PF02567 Phenazine biosynthesis-like protein NJU99_04025 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJU99_04040 PF04909 Amidohydrolase NJU99_04045 PF00990 Diguanylate cyclase, GGDEF domain NJU99_04045 PF00072 Response regulator receiver domain NJU99_04050 PF03737 Aldolase/RraA NJU99_04055 PF00990 Diguanylate cyclase, GGDEF domain NJU99_04060 PF13726 Na+-H+ antiporter family NJU99_04060 PF03553 Na+/H+ antiporter family NJU99_04065 PF00563 EAL domain NJU99_04065 PF00990 Diguanylate cyclase, GGDEF domain NJU99_04065 PF08448 PAS fold NJU99_04070 PF01883 Iron-sulfur cluster assembly protein NJU99_04075 PF02657 Fe-S metabolism associated domain NJU99_04080 PF00266 Aminotransferase class-V NJU99_04085 PF01458 Uncharacterized protein family (UPF0051) NJU99_04090 PF00005 ABC transporter NJU99_04095 PF01458 Uncharacterized protein family (UPF0051) NJU99_04100 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_04105 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJU99_04110 PF00266 Aminotransferase class-V NJU99_04115 PF01592 NifU-like N terminal domain NJU99_04115 PF04324 BFD-like [2Fe-2S] binding domain NJU99_04115 PF01106 NifU-like domain NJU99_04125 PF14698 Argininosuccinate lyase C-terminal NJU99_04125 PF00206 Lyase NJU99_04130 PF01584 CheW-like domain NJU99_04130 PF00072 Response regulator receiver domain NJU99_04135 PF00899 ThiF family NJU99_04140 PF01272 Transcription elongation factor, GreA/GreB, C-term NJU99_04140 PF03449 Transcription elongation factor, N-terminal NJU99_04145 PF01118 Semialdehyde dehydrogenase, NAD binding domain NJU99_04145 PF02774 Semialdehyde dehydrogenase, dimerisation domain NJU99_04150 PF00149 Calcineurin-like phosphoesterase NJU99_04160 PF02151 UvrB/uvrC motif NJU99_04160 PF12344 Ultra-violet resistance protein B NJU99_04160 PF00271 Helicase conserved C-terminal domain NJU99_04160 PF17757 UvrB interaction domain NJU99_04160 PF04851 Type III restriction enzyme, res subunit NJU99_04165 PF00730 HhH-GPD superfamily base excision DNA repair protein NJU99_04165 PF00633 Helix-hairpin-helix motif NJU99_04185 PF02502 Ribose/Galactose Isomerase NJU99_04190 PF10502 Signal peptidase, peptidase S26 NJU99_04195 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NJU99_04195 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NJU99_04200 PF01386 Ribosomal L25p family NJU99_04200 PF14693 Ribosomal protein TL5, C-terminal domain NJU99_04205 PF01195 Peptidyl-tRNA hydrolase NJU99_04220 PF01520 N-acetylmuramoyl-L-alanine amidase NJU99_04230 PF01479 S4 domain NJU99_04230 PF00579 tRNA synthetases class I (W and Y) NJU99_04235 PF02824 TGS domain NJU99_04235 PF04607 Region found in RelA / SpoT proteins NJU99_04235 PF13291 ACT domain NJU99_04240 PF01192 RNA polymerase Rpb6 NJU99_04245 PF00696 Amino acid kinase family NJU99_04255 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NJU99_04260 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NJU99_04265 PF00425 chorismate binding enzyme NJU99_04265 PF04715 Anthranilate synthase component I, N terminal region NJU99_04275 PF00464 Serine hydroxymethyltransferase NJU99_04280 PF00152 tRNA synthetases class II (D, K and N) NJU99_04280 PF01336 OB-fold nucleic acid binding domain NJU99_04290 PF04551 GcpE protein NJU99_04295 PF00772 DnaB-like helicase N terminal domain NJU99_04295 PF03796 DnaB-like helicase C terminal domain NJU99_04300 PF07963 Prokaryotic N-terminal methylation motif NJU99_04300 PF08334 Type II secretion system (T2SS), protein G NJU99_04315 PF06082 Exopolysaccharide biosynthesis protein YbjH NJU99_04325 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NJU99_04325 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NJU99_04325 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NJU99_04325 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NJU99_04330 PF00483 Nucleotidyl transferase NJU99_04345 PF00342 Phosphoglucose isomerase NJU99_04350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NJU99_04350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NJU99_04350 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NJU99_04355 PF01370 NAD dependent epimerase/dehydratase family NJU99_04360 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NJU99_04360 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NJU99_04360 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NJU99_04365 PF02719 Polysaccharide biosynthesis protein NJU99_04370 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NJU99_04380 PF03102 NeuB family NJU99_04380 PF08666 SAF domain NJU99_04385 PF01575 MaoC like domain NJU99_04390 PF02350 UDP-N-acetylglucosamine 2-epimerase NJU99_04395 PF02585 GlcNAc-PI de-N-acetylase NJU99_04400 PF00483 Nucleotidyl transferase NJU99_04405 PF02348 Cytidylyltransferase NJU99_04405 PF13472 GDSL-like Lipase/Acylhydrolase family NJU99_04440 PF00535 Glycosyl transferase family 2 NJU99_04445 PF02397 Bacterial sugar transferase NJU99_04450 PF05016 ParE toxin of type II toxin-antitoxin system, parDE NJU99_04455 PF09820 Predicted AAA-ATPase NJU99_04455 PF08011 PD-(D/E)XK nuclease superfamily NJU99_04465 PF00294 pfkB family carbohydrate kinase NJU99_04465 PF01467 Cytidylyltransferase-like NJU99_04470 PF13580 SIS domain NJU99_04475 PF08645 Polynucleotide kinase 3 phosphatase NJU99_04480 PF01370 NAD dependent epimerase/dehydratase family NJU99_04485 PF16363 GDP-mannose 4,6 dehydratase NJU99_04490 PF00156 Phosphoribosyl transferase domain NJU99_04495 PF00291 Pyridoxal-phosphate dependent enzyme NJU99_04505 PF02789 Cytosol aminopeptidase family, N-terminal domain NJU99_04505 PF00883 Cytosol aminopeptidase family, catalytic domain NJU99_04510 PF01068 ATP dependent DNA ligase domain NJU99_04510 PF14743 DNA ligase OB-like domain NJU99_04515 PF00313 'Cold-shock' DNA-binding domain NJU99_04525 PF01926 50S ribosome-binding GTPase NJU99_04525 PF06071 Protein of unknown function (DUF933) NJU99_04550 PF06865 Pyrimidine/purine nucleoside phosphorylase NJU99_04555 PF00034 Cytochrome c NJU99_04555 PF03150 Di-haem cytochrome c peroxidase NJU99_04560 PF00563 EAL domain NJU99_04560 PF08495 FIST N domain NJU99_04560 PF00990 Diguanylate cyclase, GGDEF domain NJU99_04560 PF10442 FIST C domain NJU99_04570 PF00586 AIR synthase related protein, N-terminal domain NJU99_04570 PF02769 AIR synthase related protein, C-terminal domain NJU99_04575 PF01142 tRNA pseudouridine synthase D (TruD) NJU99_04585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_04585 PF00672 HAMP domain NJU99_04585 PF12729 Four helix bundle sensory module for signal transduction NJU99_04590 PF07499 RuvA, C-terminal domain NJU99_04590 PF01330 RuvA N terminal domain NJU99_04595 PF07478 D-ala D-ala ligase C-terminus NJU99_04595 PF01820 D-ala D-ala ligase N-terminus NJU99_04605 PF01225 Mur ligase family, catalytic domain NJU99_04605 PF02875 Mur ligase family, glutamate ligase domain NJU99_04605 PF08245 Mur ligase middle domain NJU99_04615 PF01266 FAD dependent oxidoreductase NJU99_04630 PF02954 Bacterial regulatory protein, Fis family NJU99_04630 PF00158 Sigma-54 interaction domain NJU99_04640 PF00440 Bacterial regulatory proteins, tetR family NJU99_04640 PF08359 YsiA-like protein, C-terminal region NJU99_04665 PF00338 Ribosomal protein S10p/S20e NJU99_04670 PF00297 Ribosomal protein L3 NJU99_04675 PF00573 Ribosomal protein L4/L1 family NJU99_04680 PF00276 Ribosomal protein L23 NJU99_04685 PF00181 Ribosomal Proteins L2, RNA binding domain NJU99_04685 PF03947 Ribosomal Proteins L2, C-terminal domain NJU99_04690 PF00203 Ribosomal protein S19 NJU99_04695 PF00237 Ribosomal protein L22p/L17e NJU99_04700 PF00189 Ribosomal protein S3, C-terminal domain NJU99_04700 PF07650 KH domain NJU99_04705 PF00252 Ribosomal protein L16p/L10e NJU99_04710 PF00831 Ribosomal L29 protein NJU99_04715 PF00366 Ribosomal protein S17 NJU99_04720 PF00238 Ribosomal protein L14p/L23e NJU99_04725 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NJU99_04725 PF00467 KOW motif NJU99_04730 PF00673 ribosomal L5P family C-terminus NJU99_04730 PF00281 Ribosomal protein L5 NJU99_04735 PF00253 Ribosomal protein S14p/S29e NJU99_04740 PF00410 Ribosomal protein S8 NJU99_04745 PF00347 Ribosomal protein L6 NJU99_04750 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NJU99_04755 PF03719 Ribosomal protein S5, C-terminal domain NJU99_04755 PF00333 Ribosomal protein S5, N-terminal domain NJU99_04760 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NJU99_04765 PF00344 SecY translocase NJU99_04770 PF00557 Metallopeptidase family M24 NJU99_04775 PF01176 Translation initiation factor 1A / IF-1 NJU99_04785 PF03167 Uracil DNA glycosylase superfamily NJU99_04795 PF01336 OB-fold nucleic acid binding domain NJU99_04795 PF00152 tRNA synthetases class II (D, K and N) NJU99_04795 PF02938 GAD domain NJU99_04810 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NJU99_04820 PF08497 Radical SAM N-terminal NJU99_04820 PF04055 Radical SAM superfamily NJU99_04840 PF01168 Alanine racemase, N-terminal domain NJU99_04840 PF00842 Alanine racemase, C-terminal domain NJU99_04845 PF02151 UvrB/uvrC motif NJU99_04845 PF08459 UvrC Helix-hairpin-helix N-terminal NJU99_04845 PF01541 GIY-YIG catalytic domain NJU99_04875 PF00255 Glutathione peroxidase NJU99_04880 PF17158 Membrane-associated sensor, integral membrane domain NJU99_04880 PF00990 Diguanylate cyclase, GGDEF domain NJU99_04885 PF00990 Diguanylate cyclase, GGDEF domain NJU99_04895 PF00072 Response regulator receiver domain NJU99_04910 PF10263 SprT-like family NJU99_04910 PF17283 SprT-like zinc ribbon domain NJU99_04915 PF00226 DnaJ domain NJU99_04915 PF00684 DnaJ central domain NJU99_04915 PF01556 DnaJ C terminal domain NJU99_04920 PF02652 L-lactate permease NJU99_04935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_04935 PF00989 PAS fold NJU99_04935 PF00512 His Kinase A (phospho-acceptor) domain NJU99_04960 PF17200 Single Cache domain 2 NJU99_04960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_04960 PF00672 HAMP domain NJU99_04965 PF00072 Response regulator receiver domain NJU99_04965 PF00486 Transcriptional regulatory protein, C terminal NJU99_04970 PF00072 Response regulator receiver domain NJU99_04975 PF09308 LuxQ, periplasmic NJU99_04975 PF00512 His Kinase A (phospho-acceptor) domain NJU99_04975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_04975 PF00072 Response regulator receiver domain NJU99_04985 PF02653 Branched-chain amino acid transport system / permease component NJU99_04995 PF12399 Branched-chain amino acid ATP-binding cassette transporter NJU99_04995 PF00005 ABC transporter NJU99_05000 PF00005 ABC transporter NJU99_05015 PF01014 Uricase NJU99_05015 PF09349 OHCU decarboxylase NJU99_05020 PF03561 Allantoicase repeat NJU99_05025 PF04115 Ureidoglycolate lyase NJU99_05035 PF00576 HIUase/Transthyretin family NJU99_05045 PF00860 Permease family NJU99_05050 PF01979 Amidohydrolase family NJU99_05055 PF01774 UreD urease accessory protein NJU99_05060 PF00699 Urease beta subunit NJU99_05060 PF00547 Urease, gamma subunit NJU99_05065 PF01979 Amidohydrolase family NJU99_05065 PF00449 Urease alpha-subunit, N-terminal domain NJU99_05070 PF05194 UreE urease accessory protein, C-terminal domain NJU99_05080 PF02492 CobW/HypB/UreG, nucleotide-binding domain NJU99_05085 PF00933 Glycosyl hydrolase family 3 N terminal domain NJU99_05095 PF00589 Phage integrase family NJU99_05095 PF13495 Phage integrase, N-terminal SAM-like domain NJU99_05100 PF00589 Phage integrase family NJU99_05100 PF13495 Phage integrase, N-terminal SAM-like domain NJU99_05145 PF03372 Endonuclease/Exonuclease/phosphatase family NJU99_05150 PF00042 Globin NJU99_05155 PF16925 Tetracyclin repressor-like, C-terminal domain NJU99_05155 PF00440 Bacterial regulatory proteins, tetR family NJU99_05160 PF00578 AhpC/TSA family NJU99_05185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05185 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05190 PF00072 Response regulator receiver domain NJU99_05190 PF00486 Transcriptional regulatory protein, C terminal NJU99_05220 PF01266 FAD dependent oxidoreductase NJU99_05225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05230 PF00486 Transcriptional regulatory protein, C terminal NJU99_05230 PF00072 Response regulator receiver domain NJU99_05260 PF03466 LysR substrate binding domain NJU99_05260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJU99_05275 PF01361 Tautomerase enzyme NJU99_05280 PF12794 Mechanosensitive ion channel inner membrane domain 1 NJU99_05280 PF12795 Mechanosensitive ion channel porin domain NJU99_05280 PF00924 Mechanosensitive ion channel NJU99_05290 PF01544 CorA-like Mg2+ transporter protein NJU99_05300 PF18030 RimK PreATP-grasp domain NJU99_05300 PF08443 RimK-like ATP-grasp domain NJU99_05320 PF01235 Sodium:alanine symporter family NJU99_05325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05325 PF00672 HAMP domain NJU99_05325 PF13755 Sensor N-terminal transmembrane domain NJU99_05325 PF13756 Stimulus-sensing domain NJU99_05325 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05330 PF00486 Transcriptional regulatory protein, C terminal NJU99_05330 PF00072 Response regulator receiver domain NJU99_05335 PF07687 Peptidase dimerisation domain NJU99_05335 PF01546 Peptidase family M20/M25/M40 NJU99_05340 PF00557 Metallopeptidase family M24 NJU99_05340 PF01321 Creatinase/Prolidase N-terminal domain NJU99_05345 PF00171 Aldehyde dehydrogenase family NJU99_05350 PF00202 Aminotransferase class-III NJU99_05360 PF00206 Lyase NJU99_05360 PF10415 Fumarase C C-terminus NJU99_05370 PF00210 Ferritin-like domain NJU99_05375 PF00672 HAMP domain NJU99_05375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05375 PF18698 Histidine kinase sensor domain NJU99_05375 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05380 PF01368 DHH family NJU99_05380 PF02833 DHHA2 domain NJU99_05385 PF00183 Hsp90 protein NJU99_05395 PF00491 Arginase family NJU99_05400 PF08713 DNA alkylation repair enzyme NJU99_05405 PF04073 Aminoacyl-tRNA editing domain NJU99_05410 PF05088 Bacterial NAD-glutamate dehydrogenase NJU99_05425 PF00072 Response regulator receiver domain NJU99_05425 PF00486 Transcriptional regulatory protein, C terminal NJU99_05440 PF04403 Paraquat-inducible protein A NJU99_05445 PF02470 MlaD protein NJU99_05455 PF11066 Protein of unknown function (DUF2867) NJU99_05455 PF13460 NAD(P)H-binding NJU99_05470 PF00183 Hsp90 protein NJU99_05485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJU99_05485 PF03466 LysR substrate binding domain NJU99_05505 PF02203 Tar ligand binding domain homologue NJU99_05505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_05505 PF00672 HAMP domain NJU99_05525 PF03641 Possible lysine decarboxylase NJU99_05530 PF07730 Histidine kinase NJU99_05530 PF17200 Single Cache domain 2 NJU99_05540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05540 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05540 PF12833 Helix-turn-helix domain NJU99_05540 PF07494 Two component regulator propeller NJU99_05540 PF00072 Response regulator receiver domain NJU99_05540 PF07495 Y_Y_Y domain NJU99_05545 PF03480 Bacterial extracellular solute-binding protein, family 7 NJU99_05555 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NJU99_05565 PF03746 LamB/YcsF family NJU99_05575 PF02626 Carboxyltransferase domain, subdomain A and B NJU99_05585 PF08495 FIST N domain NJU99_05585 PF00563 EAL domain NJU99_05585 PF00990 Diguanylate cyclase, GGDEF domain NJU99_05585 PF10442 FIST C domain NJU99_05600 PF03880 DbpA RNA binding domain NJU99_05600 PF00270 DEAD/DEAH box helicase NJU99_05600 PF00271 Helicase conserved C-terminal domain NJU99_05605 PF00563 EAL domain NJU99_05605 PF00990 Diguanylate cyclase, GGDEF domain NJU99_05605 PF03707 Bacterial signalling protein N terminal repeat NJU99_05615 PF00925 GTP cyclohydrolase II NJU99_05620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05620 PF00989 PAS fold NJU99_05620 PF16736 Single Cache-like NJU99_05620 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05635 PF02203 Tar ligand binding domain homologue NJU99_05635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_05635 PF00672 HAMP domain NJU99_05645 PF02562 PhoH-like protein NJU99_05645 PF13638 PIN domain NJU99_05650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05650 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05650 PF02743 Cache domain NJU99_05660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05660 PF00989 PAS fold NJU99_05660 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05665 PF09308 LuxQ, periplasmic NJU99_05665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05665 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05665 PF00072 Response regulator receiver domain NJU99_05675 PF00672 HAMP domain NJU99_05675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05675 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05675 PF01627 Hpt domain NJU99_05675 PF00072 Response regulator receiver domain NJU99_05675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJU99_05680 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJU99_05680 PF00072 Response regulator receiver domain NJU99_05680 PF01627 Hpt domain NJU99_05680 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05680 PF00672 HAMP domain NJU99_05685 PF00072 Response regulator receiver domain NJU99_05690 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJU99_05690 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05735 PF02659 Putative manganese efflux pump NJU99_05740 PF09106 Elongation factor SelB, winged helix NJU99_05740 PF03144 Elongation factor Tu domain 2 NJU99_05740 PF00009 Elongation factor Tu GTP binding domain NJU99_05740 PF09105 Elongation factor SelB, winged helix NJU99_05740 PF09107 Elongation factor SelB, winged helix NJU99_05745 PF03841 L-seryl-tRNA selenium transferase NJU99_05790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJU99_05805 PF01043 SecA preprotein cross-linking domain NJU99_05805 PF07517 SecA DEAD-like domain NJU99_05810 PF04231 Endonuclease I NJU99_05830 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJU99_05830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05830 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05835 PF11849 Domain of unknown function (DUF3369) NJU99_05845 PF00005 ABC transporter NJU99_05850 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_05855 PF00149 Calcineurin-like phosphoesterase NJU99_05860 PF00072 Response regulator receiver domain NJU99_05860 PF00158 Sigma-54 interaction domain NJU99_05865 PF00989 PAS fold NJU99_05865 PF00512 His Kinase A (phospho-acceptor) domain NJU99_05865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_05895 PF13247 4Fe-4S dicluster domain NJU99_05905 PF02634 FdhD/NarQ family NJU99_05915 PF03459 TOBE domain NJU99_05915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJU99_05925 PF03453 MoeA N-terminal region (domain I and II) NJU99_05925 PF03454 MoeA C-terminal region (domain IV) NJU99_05925 PF00994 Probable molybdopterin binding domain NJU99_05930 PF12849 PBP superfamily domain NJU99_05935 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_05940 PF00005 ABC transporter NJU99_05960 PF00313 'Cold-shock' DNA-binding domain NJU99_05965 PF00682 HMGL-like NJU99_05970 PF00072 Response regulator receiver domain NJU99_05970 PF00196 Bacterial regulatory proteins, luxR family NJU99_05975 PF00464 Serine hydroxymethyltransferase NJU99_05980 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NJU99_05980 PF12833 Helix-turn-helix domain NJU99_05980 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NJU99_05980 PF02805 Metal binding domain of Ada NJU99_06015 PF00486 Transcriptional regulatory protein, C terminal NJU99_06015 PF00072 Response regulator receiver domain NJU99_06040 PF17158 Membrane-associated sensor, integral membrane domain NJU99_06040 PF00990 Diguanylate cyclase, GGDEF domain NJU99_06050 PF00990 Diguanylate cyclase, GGDEF domain NJU99_06050 PF00072 Response regulator receiver domain NJU99_06055 PF03737 Aldolase/RraA NJU99_06075 PF02600 Disulfide bond formation protein DsbB NJU99_06100 PF08534 Redoxin NJU99_06105 PF00155 Aminotransferase class I and II NJU99_06115 PF13419 Haloacid dehalogenase-like hydrolase NJU99_06125 PF13426 PAS domain NJU99_06125 PF13188 PAS domain NJU99_06125 PF00989 PAS fold NJU99_06125 PF00512 His Kinase A (phospho-acceptor) domain NJU99_06125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_06140 PF04333 MlaA lipoprotein NJU99_06145 PF01551 Peptidase family M23 NJU99_06150 PF10415 Fumarase C C-terminus NJU99_06150 PF00206 Lyase NJU99_06155 PF01709 Transcriptional regulator NJU99_06160 PF01627 Hpt domain NJU99_06160 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJU99_06160 PF00072 Response regulator receiver domain NJU99_06160 PF00672 HAMP domain NJU99_06160 PF00512 His Kinase A (phospho-acceptor) domain NJU99_06160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_06165 PF00990 Diguanylate cyclase, GGDEF domain NJU99_06165 PF00072 Response regulator receiver domain NJU99_06170 PF01435 Peptidase family M48 NJU99_06180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NJU99_06180 PF02770 Acyl-CoA dehydrogenase, middle domain NJU99_06180 PF09317 Domain of unknown function (DUF1974) NJU99_06180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NJU99_06185 PF00378 Enoyl-CoA hydratase/isomerase NJU99_06185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NJU99_06185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NJU99_06190 PF02803 Thiolase, C-terminal domain NJU99_06190 PF00108 Thiolase, N-terminal domain NJU99_06195 PF00501 AMP-binding enzyme NJU99_06205 PF10415 Fumarase C C-terminus NJU99_06205 PF00206 Lyase NJU99_06215 PF11791 Aconitate B N-terminal domain NJU99_06215 PF00330 Aconitase family (aconitate hydratase) NJU99_06215 PF06434 Aconitate hydratase 2 N-terminus NJU99_06220 PF00849 RNA pseudouridylate synthase NJU99_06235 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NJU99_06235 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal NJU99_06245 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal NJU99_06245 PF10518 TAT (twin-arginine translocation) pathway signal sequence NJU99_06245 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NJU99_06250 PF00374 Nickel-dependent hydrogenase NJU99_06255 PF01292 Prokaryotic cytochrome b561 NJU99_06260 PF01750 Hydrogenase maturation protease NJU99_06285 PF00708 Acylphosphatase NJU99_06285 PF17788 HypF Kae1-like domain NJU99_06285 PF07503 HypF finger NJU99_06285 PF01300 Telomere recombination NJU99_06300 PF00209 Sodium:neurotransmitter symporter family NJU99_06310 PF12823 Domain of unknown function (DUF3817) NJU99_06315 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJU99_06315 PF00512 His Kinase A (phospho-acceptor) domain NJU99_06315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_06325 PF00990 Diguanylate cyclase, GGDEF domain NJU99_06340 PF00672 HAMP domain NJU99_06340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_06340 PF02203 Tar ligand binding domain homologue NJU99_06345 PF02492 CobW/HypB/UreG, nucleotide-binding domain NJU99_06350 PF01455 HupF/HypC family NJU99_06355 PF01924 Hydrogenase formation hypA family NJU99_06360 PF00586 AIR synthase related protein, N-terminal domain NJU99_06360 PF02769 AIR synthase related protein, C-terminal domain NJU99_06365 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NJU99_06370 PF00990 Diguanylate cyclase, GGDEF domain NJU99_06370 PF00072 Response regulator receiver domain NJU99_06380 PF02653 Branched-chain amino acid transport system / permease component NJU99_06385 PF11862 Domain of unknown function (DUF3382) NJU99_06385 PF02653 Branched-chain amino acid transport system / permease component NJU99_06390 PF12399 Branched-chain amino acid ATP-binding cassette transporter NJU99_06390 PF00005 ABC transporter NJU99_06395 PF00005 ABC transporter NJU99_06415 PF17764 3′ DNA-binding domain (3′BD) NJU99_06415 PF18074 Primosomal protein N C-terminal domain NJU99_06415 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NJU99_06415 PF00271 Helicase conserved C-terminal domain NJU99_06415 PF00270 DEAD/DEAH box helicase NJU99_06420 PF14602 Hexapeptide repeat of succinyl-transferase NJU99_06420 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle NJU99_06430 PF00005 ABC transporter NJU99_06430 PF16326 ABC transporter C-terminal domain NJU99_06430 PF12848 ABC transporter NJU99_06440 PF00990 Diguanylate cyclase, GGDEF domain NJU99_06440 PF08495 FIST N domain NJU99_06440 PF10442 FIST C domain NJU99_06440 PF00563 EAL domain NJU99_06465 PF00005 ABC transporter NJU99_06470 PF02390 Putative methyltransferase NJU99_06480 PF01479 S4 domain NJU99_06480 PF00849 RNA pseudouridylate synthase NJU99_06485 PF01098 Cell cycle protein NJU99_06490 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NJU99_06490 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NJU99_06510 PF00990 Diguanylate cyclase, GGDEF domain NJU99_06510 PF00072 Response regulator receiver domain NJU99_06515 PF00202 Aminotransferase class-III NJU99_06520 PF06865 Pyrimidine/purine nucleoside phosphorylase NJU99_06540 PF00140 Sigma-70 factor, region 1.2 NJU99_06540 PF04542 Sigma-70 region 2 NJU99_06540 PF04539 Sigma-70 region 3 NJU99_06540 PF04545 Sigma-70, region 4 NJU99_06545 PF00694 Aconitase C-terminal domain NJU99_06550 PF00180 Isocitrate/isopropylmalate dehydrogenase NJU99_06565 PF00444 Ribosomal protein L36 NJU99_06570 PF00416 Ribosomal protein S13/S18 NJU99_06575 PF00411 Ribosomal protein S11 NJU99_06580 PF01479 S4 domain NJU99_06580 PF00163 Ribosomal protein S4/S9 N-terminal domain NJU99_06585 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NJU99_06585 PF01000 RNA polymerase Rpb3/RpoA insert domain NJU99_06585 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NJU99_06590 PF01196 Ribosomal protein L17 NJU99_06595 PF01425 Amidase NJU99_06600 PF00478 IMP dehydrogenase / GMP reductase domain NJU99_06600 PF00571 CBS domain NJU99_06655 PF12833 Helix-turn-helix domain NJU99_06655 PF02311 AraC-like ligand binding domain NJU99_06690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJU99_06705 PF00962 Adenosine/AMP deaminase NJU99_06715 PF00561 alpha/beta hydrolase fold NJU99_06725 PF04002 RadC-like JAB domain NJU99_06730 PF12161 HsdM N-terminal domain NJU99_06730 PF02384 N-6 DNA Methylase NJU99_06760 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NJU99_06760 PF12008 Type I restriction and modification enzyme - subunit R C terminal NJU99_06760 PF18766 SWI2/SNF2 ATPase NJU99_06765 PF00899 ThiF family NJU99_06770 PF02142 MGS-like domain NJU99_06770 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NJU99_06770 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NJU99_06790 PF13649 Methyltransferase domain NJU99_06795 PF00664 ABC transporter transmembrane region NJU99_06795 PF00005 ABC transporter NJU99_06795 PF03412 Peptidase C39 family NJU99_06800 PF13533 Biotin-lipoyl like NJU99_06845 PF02028 BCCT, betaine/carnitine/choline family transporter NJU99_06850 PF01761 3-dehydroquinate synthase NJU99_06860 PF00919 Uncharacterized protein family UPF0004 NJU99_06860 PF04055 Radical SAM superfamily NJU99_06865 PF06480 FtsH Extracellular NJU99_06865 PF17862 AAA+ lid domain NJU99_06865 PF01434 Peptidase family M41 NJU99_06865 PF00004 ATPase family associated with various cellular activities (AAA) NJU99_06875 PF00994 Probable molybdopterin binding domain NJU99_06880 PF00939 Sodium:sulfate symporter transmembrane region NJU99_06885 PF00488 MutS domain V NJU99_06885 PF01713 Smr domain NJU99_06900 PF07687 Peptidase dimerisation domain NJU99_06900 PF01546 Peptidase family M20/M25/M40 NJU99_06920 PF13673 Acetyltransferase (GNAT) domain NJU99_06925 PF02311 AraC-like ligand binding domain NJU99_06925 PF12833 Helix-turn-helix domain NJU99_06930 PF01161 Phosphatidylethanolamine-binding protein NJU99_06940 PF01177 Asp/Glu/Hydantoin racemase NJU99_06950 PF03831 PhnA domain NJU99_06950 PF08274 PhnA Zinc-Ribbon NJU99_06955 PF00005 ABC transporter NJU99_06965 PF02311 AraC-like ligand binding domain NJU99_06965 PF12833 Helix-turn-helix domain NJU99_06985 PF03641 Possible lysine decarboxylase NJU99_06990 PF17932 Tetracyclin repressor-like, C-terminal domain NJU99_06990 PF00440 Bacterial regulatory proteins, tetR family NJU99_07005 PF10411 Disulfide bond isomerase protein N-terminus NJU99_07005 PF13098 Thioredoxin-like domain NJU99_07015 PF01638 HxlR-like helix-turn-helix NJU99_07020 PF00881 Nitroreductase family NJU99_07040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NJU99_07050 PF00881 Nitroreductase family NJU99_07080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_07080 PF08447 PAS fold NJU99_07080 PF08448 PAS fold NJU99_07085 PF00072 Response regulator receiver domain NJU99_07085 PF00196 Bacterial regulatory proteins, luxR family NJU99_07090 PF00005 ABC transporter NJU99_07090 PF12857 TOBE-like domain NJU99_07095 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_07110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJU99_07110 PF03459 TOBE domain NJU99_07120 PF00072 Response regulator receiver domain NJU99_07120 PF00486 Transcriptional regulatory protein, C terminal NJU99_07125 PF00512 His Kinase A (phospho-acceptor) domain NJU99_07125 PF00672 HAMP domain NJU99_07125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_07130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJU99_07135 PF02926 THUMP domain NJU99_07135 PF02568 Thiamine biosynthesis protein (ThiI) NJU99_07145 PF00563 EAL domain NJU99_07145 PF00990 Diguanylate cyclase, GGDEF domain NJU99_07145 PF10442 FIST C domain NJU99_07145 PF08495 FIST N domain NJU99_07150 PF00072 Response regulator receiver domain NJU99_07155 PF01739 CheR methyltransferase, SAM binding domain NJU99_07155 PF03705 CheR methyltransferase, all-alpha domain NJU99_07160 PF00672 HAMP domain NJU99_07160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_07160 PF00512 His Kinase A (phospho-acceptor) domain NJU99_07160 PF01627 Hpt domain NJU99_07160 PF00072 Response regulator receiver domain NJU99_07160 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJU99_07165 PF12848 ABC transporter NJU99_07165 PF00005 ABC transporter NJU99_07170 PF03061 Thioesterase superfamily NJU99_07175 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJU99_07175 PF00072 Response regulator receiver domain NJU99_07175 PF01627 Hpt domain NJU99_07175 PF00512 His Kinase A (phospho-acceptor) domain NJU99_07175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_07175 PF00672 HAMP domain NJU99_07180 PF00072 Response regulator receiver domain NJU99_07185 PF01653 NAD-dependent DNA ligase adenylation domain NJU99_07185 PF12826 Helix-hairpin-helix motif NJU99_07185 PF03120 NAD-dependent DNA ligase OB-fold domain NJU99_07185 PF00533 BRCA1 C Terminus (BRCT) domain NJU99_07195 PF01627 Hpt domain NJU99_07195 PF00512 His Kinase A (phospho-acceptor) domain NJU99_07195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_07195 PF00072 Response regulator receiver domain NJU99_07195 PF00672 HAMP domain NJU99_07195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NJU99_07200 PF08448 PAS fold NJU99_07200 PF08447 PAS fold NJU99_07200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_07205 PF14659 Phage integrase, N-terminal SAM-like domain NJU99_07205 PF00589 Phage integrase family NJU99_07240 PF00072 Response regulator receiver domain NJU99_07245 PF00512 His Kinase A (phospho-acceptor) domain NJU99_07245 PF13188 PAS domain NJU99_07245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_07245 PF08448 PAS fold NJU99_07245 PF00072 Response regulator receiver domain NJU99_07270 PF07687 Peptidase dimerisation domain NJU99_07270 PF01546 Peptidase family M20/M25/M40 NJU99_07275 PF01578 Cytochrome C assembly protein NJU99_07275 PF05140 ResB-like family NJU99_07280 PF08003 Protein of unknown function (DUF1698) NJU99_07285 PF00990 Diguanylate cyclase, GGDEF domain NJU99_07290 PF01590 GAF domain NJU99_07290 PF00563 EAL domain NJU99_07290 PF00360 Phytochrome region NJU99_07290 PF00990 Diguanylate cyclase, GGDEF domain NJU99_07295 PF00753 Metallo-beta-lactamase superfamily NJU99_07305 PF00392 Bacterial regulatory proteins, gntR family NJU99_07310 PF00005 ABC transporter NJU99_07320 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_07335 PF05861 Bacterial phosphonate metabolism protein (PhnI) NJU99_07340 PF06007 Phosphonate metabolism protein PhnJ NJU99_07345 PF00005 ABC transporter NJU99_07350 PF00005 ABC transporter NJU99_07355 PF07969 Amidohydrolase family NJU99_07360 PF00132 Bacterial transferase hexapeptide (six repeats) NJU99_07365 PF00625 Guanylate kinase NJU99_07380 PF00753 Metallo-beta-lactamase superfamily NJU99_07380 PF12706 Beta-lactamase superfamily domain NJU99_07390 PF01593 Flavin containing amine oxidoreductase NJU99_07395 PF03109 ABC1 family NJU99_07410 PF08212 Lipocalin-like domain NJU99_07430 PF00465 Iron-containing alcohol dehydrogenase NJU99_07435 PF12833 Helix-turn-helix domain NJU99_07435 PF06719 AraC-type transcriptional regulator N-terminus NJU99_07440 PF11849 Domain of unknown function (DUF3369) NJU99_07445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_07445 PF00672 HAMP domain NJU99_07445 PF00512 His Kinase A (phospho-acceptor) domain NJU99_07450 PF00072 Response regulator receiver domain NJU99_07450 PF00486 Transcriptional regulatory protein, C terminal NJU99_07455 PF00149 Calcineurin-like phosphoesterase NJU99_07475 PF00005 ABC transporter NJU99_07485 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NJU99_07490 PF12792 CSS motif domain associated with EAL NJU99_07490 PF00563 EAL domain NJU99_07495 PF01243 Pyridoxamine 5'-phosphate oxidase NJU99_07495 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NJU99_07515 PF01593 Flavin containing amine oxidoreductase NJU99_07540 PF02581 Thiamine monophosphate synthase NJU99_07545 PF08543 Phosphomethylpyrimidine kinase NJU99_07565 PF00291 Pyridoxal-phosphate dependent enzyme NJU99_07570 PF08448 PAS fold NJU99_07570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_07570 PF08447 PAS fold NJU99_07575 PF01556 DnaJ C terminal domain NJU99_07575 PF00684 DnaJ central domain NJU99_07575 PF00226 DnaJ domain NJU99_07580 PF02132 RecR protein NJU99_07580 PF13662 Toprim domain NJU99_07585 PF08447 PAS fold NJU99_07585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_07590 PF00672 HAMP domain NJU99_07590 PF02203 Tar ligand binding domain homologue NJU99_07590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_07600 PF00132 Bacterial transferase hexapeptide (six repeats) NJU99_07610 PF10531 SLBB domain NJU99_07615 PF08443 RimK-like ATP-grasp domain NJU99_07615 PF18030 RimK PreATP-grasp domain NJU99_07625 PF00764 Arginosuccinate synthase NJU99_07635 PF02885 Glycosyl transferase family, helical bundle domain NJU99_07635 PF00591 Glycosyl transferase family, a/b domain NJU99_07640 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NJU99_07645 PF00005 ABC transporter NJU99_07645 PF12399 Branched-chain amino acid ATP-binding cassette transporter NJU99_07650 PF08448 PAS fold NJU99_07650 PF00990 Diguanylate cyclase, GGDEF domain NJU99_07655 PF00990 Diguanylate cyclase, GGDEF domain NJU99_07655 PF10442 FIST C domain NJU99_07655 PF08495 FIST N domain NJU99_07655 PF00563 EAL domain NJU99_07660 PF02348 Cytidylyltransferase NJU99_07665 PF00476 DNA polymerase family A NJU99_07665 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NJU99_07665 PF01367 5'-3' exonuclease, C-terminal SAM fold NJU99_07685 PF01790 Prolipoprotein diacylglyceryl transferase NJU99_07690 PF02754 Cysteine-rich domain NJU99_07690 PF02665 Nitrate reductase gamma subunit NJU99_07690 PF13183 4Fe-4S dicluster domain NJU99_07695 PF03009 Glycerophosphoryl diester phosphodiesterase family NJU99_07700 PF06969 HemN C-terminal domain NJU99_07700 PF04055 Radical SAM superfamily NJU99_07705 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NJU99_07705 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NJU99_07710 PF00490 Delta-aminolevulinic acid dehydratase NJU99_07715 PF00925 GTP cyclohydrolase II NJU99_07720 PF02527 rRNA small subunit methyltransferase G NJU99_07725 PF02069 Prokaryotic metallothionein NJU99_07740 PF02092 Glycyl-tRNA synthetase beta subunit NJU99_07775 PF00925 GTP cyclohydrolase II NJU99_07775 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NJU99_07785 PF01293 Phosphoenolpyruvate carboxykinase NJU99_07790 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit NJU99_07795 PF00682 HMGL-like NJU99_07795 PF08502 LeuA allosteric (dimerisation) domain NJU99_07800 PF04277 Oxaloacetate decarboxylase, gamma chain NJU99_07815 PF00133 tRNA synthetases class I (I, L, M and V) NJU99_07815 PF09334 tRNA synthetases class I (M) NJU99_07815 PF01588 Putative tRNA binding domain NJU99_07825 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NJU99_07850 PF02325 YGGT family NJU99_07855 PF00749 tRNA synthetases class I (E and Q), catalytic domain NJU99_07860 PF05193 Peptidase M16 inactive domain NJU99_07865 PF04055 Radical SAM superfamily NJU99_07870 PF01103 Surface antigen NJU99_07870 PF07244 Surface antigen variable number repeat NJU99_07875 PF02153 Prephenate dehydrogenase NJU99_07875 PF01842 ACT domain NJU99_07880 PF00809 Pterin binding enzyme NJU99_07895 PF13840 ACT domain NJU99_07895 PF01842 ACT domain NJU99_07895 PF00696 Amino acid kinase family NJU99_07900 PF00293 NUDIX domain NJU99_07905 PF04055 Radical SAM superfamily NJU99_07905 PF06969 HemN C-terminal domain NJU99_07910 PF05175 Methyltransferase small domain NJU99_07910 PF17827 PrmC N-terminal domain NJU99_07915 PF01432 Peptidase family M3 NJU99_07930 PF18644 Phage integrase SAM-like domain NJU99_07930 PF00589 Phage integrase family NJU99_07935 PF00990 Diguanylate cyclase, GGDEF domain NJU99_07935 PF08448 PAS fold NJU99_07940 PF00072 Response regulator receiver domain NJU99_07940 PF01339 CheB methylesterase NJU99_07945 PF03975 CheD chemotactic sensory transduction NJU99_07950 PF01739 CheR methyltransferase, SAM binding domain NJU99_07950 PF03705 CheR methyltransferase, all-alpha domain NJU99_07955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_07955 PF02895 Signal transducing histidine kinase, homodimeric domain NJU99_07955 PF09078 CheY binding NJU99_07955 PF01584 CheW-like domain NJU99_07955 PF01627 Hpt domain NJU99_07960 PF00072 Response regulator receiver domain NJU99_07965 PF00013 KH domain NJU99_07965 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NJU99_07965 PF03725 3' exoribonuclease family, domain 2 NJU99_07965 PF00575 S1 RNA binding domain NJU99_07965 PF01138 3' exoribonuclease family, domain 1 NJU99_07975 PF04453 LPS transport system D NJU99_07975 PF03968 OstA-like protein NJU99_07985 PF02844 Phosphoribosylglycinamide synthetase, N domain NJU99_07985 PF02843 Phosphoribosylglycinamide synthetase, C domain NJU99_07985 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NJU99_07995 PF01740 STAS domain NJU99_07995 PF00916 Sulfate permease family NJU99_08000 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NJU99_08000 PF01926 50S ribosome-binding GTPase NJU99_08005 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NJU99_08005 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NJU99_08010 PF01580 FtsK/SpoIIIE family NJU99_08010 PF17854 FtsK alpha domain NJU99_08010 PF09397 Ftsk gamma domain NJU99_08015 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NJU99_08015 PF00132 Bacterial transferase hexapeptide (six repeats) NJU99_08020 PF10369 Small subunit of acetolactate synthase NJU99_08025 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NJU99_08025 PF00205 Thiamine pyrophosphate enzyme, central domain NJU99_08025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJU99_08035 PF02541 Ppx/GppA phosphatase family NJU99_08040 PF01066 CDP-alcohol phosphatidyltransferase NJU99_08045 PF17158 Membrane-associated sensor, integral membrane domain NJU99_08045 PF00990 Diguanylate cyclase, GGDEF domain NJU99_08050 PF01740 STAS domain NJU99_08050 PF00916 Sulfate permease family NJU99_08065 PF00085 Thioredoxin NJU99_08070 PF04463 Protein of unknown function (DUF523) NJU99_08075 PF01171 PP-loop family NJU99_08085 PF03453 MoeA N-terminal region (domain I and II) NJU99_08085 PF03454 MoeA C-terminal region (domain IV) NJU99_08085 PF00994 Probable molybdopterin binding domain NJU99_08095 PF02646 RmuC family NJU99_08100 PF01435 Peptidase family M48 NJU99_08100 PF16491 CAAX prenyl protease N-terminal, five membrane helices NJU99_08105 PF08448 PAS fold NJU99_08105 PF00990 Diguanylate cyclase, GGDEF domain NJU99_08115 PF03061 Thioesterase superfamily NJU99_08150 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NJU99_08155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_08155 PF00672 HAMP domain NJU99_08155 PF02203 Tar ligand binding domain homologue NJU99_08160 PF00990 Diguanylate cyclase, GGDEF domain NJU99_08165 PF00248 Aldo/keto reductase family NJU99_08180 PF07685 CobB/CobQ-like glutamine amidotransferase domain NJU99_08195 PF01032 FecCD transport family NJU99_08200 PF00005 ABC transporter NJU99_08210 PF07715 TonB-dependent Receptor Plug Domain NJU99_08210 PF00593 TonB dependent receptor NJU99_08225 PF13419 Haloacid dehalogenase-like hydrolase NJU99_08230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_08230 PF02203 Tar ligand binding domain homologue NJU99_08230 PF00672 HAMP domain NJU99_08240 PF00593 TonB dependent receptor NJU99_08240 PF07715 TonB-dependent Receptor Plug Domain NJU99_08250 PF16200 C-terminal region of band_7 NJU99_08250 PF01145 SPFH domain / Band 7 family NJU99_08260 PF00486 Transcriptional regulatory protein, C terminal NJU99_08260 PF00072 Response regulator receiver domain NJU99_08265 PF00672 HAMP domain NJU99_08265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_08265 PF02203 Tar ligand binding domain homologue NJU99_08270 PF00588 SpoU rRNA Methylase family NJU99_08275 PF01842 ACT domain NJU99_08275 PF00551 Formyl transferase NJU99_08280 PF00390 Malic enzyme, N-terminal domain NJU99_08280 PF03949 Malic enzyme, NAD binding domain NJU99_08280 PF01515 Phosphate acetyl/butaryl transferase NJU99_08285 PF02578 Multi-copper polyphenol oxidoreductase laccase NJU99_08290 PF13847 Methyltransferase domain NJU99_08300 PF08501 Shikimate dehydrogenase substrate binding domain NJU99_08330 PF12833 Helix-turn-helix domain NJU99_08330 PF12852 Cupin NJU99_08355 PF03738 Glutathionylspermidine synthase preATP-grasp NJU99_08375 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NJU99_08380 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NJU99_08385 PF02540 NAD synthase NJU99_08405 PF05099 Tellurite resistance protein TerB NJU99_08405 PF00226 DnaJ domain NJU99_08410 PF02416 mttA/Hcf106 family NJU99_08415 PF00902 Sec-independent protein translocase protein (TatC) NJU99_08420 PF02547 Queuosine biosynthesis protein NJU99_08430 PF00209 Sodium:neurotransmitter symporter family NJU99_08440 PF00072 Response regulator receiver domain NJU99_08440 PF00990 Diguanylate cyclase, GGDEF domain NJU99_08445 PF01966 HD domain NJU99_08445 PF13286 Phosphohydrolase-associated domain NJU99_08450 PF00027 Cyclic nucleotide-binding domain NJU99_08450 PF00520 Ion transport protein NJU99_08460 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NJU99_08490 PF13476 AAA domain NJU99_08525 PF00132 Bacterial transferase hexapeptide (six repeats) NJU99_08545 PF03781 Sulfatase-modifying factor enzyme 1 NJU99_08545 PF12867 DinB superfamily NJU99_08560 PF03737 Aldolase/RraA NJU99_08585 PF02310 B12 binding domain NJU99_08590 PF06368 Methylaspartate mutase E chain (MutE) NJU99_08600 PF00501 AMP-binding enzyme NJU99_08600 PF13193 AMP-binding enzyme C-terminal domain NJU99_08605 PF00034 Cytochrome c NJU99_08610 PF00990 Diguanylate cyclase, GGDEF domain NJU99_08650 PF04542 Sigma-70 region 2 NJU99_08650 PF08281 Sigma-70, region 4 NJU99_08660 PF00873 AcrB/AcrD/AcrF family NJU99_08670 PF01795 MraW methylase family NJU99_08680 PF00216 Bacterial DNA-binding protein NJU99_08685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_08685 PF00672 HAMP domain NJU99_08685 PF17200 Single Cache domain 2 NJU99_08690 PF00990 Diguanylate cyclase, GGDEF domain NJU99_08690 PF00072 Response regulator receiver domain NJU99_08700 PF00072 Response regulator receiver domain NJU99_08700 PF04397 LytTr DNA-binding domain NJU99_08705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_08705 PF06580 Histidine kinase NJU99_08705 PF07694 5TMR of 5TMR-LYT NJU99_08705 PF13492 GAF domain NJU99_08710 PF01593 Flavin containing amine oxidoreductase NJU99_08715 PF00875 DNA photolyase NJU99_08715 PF03441 FAD binding domain of DNA photolyase NJU99_08725 PF00270 DEAD/DEAH box helicase NJU99_08725 PF04408 Helicase associated domain (HA2) NJU99_08725 PF00271 Helicase conserved C-terminal domain NJU99_08725 PF08482 ATP-dependent helicase C-terminal NJU99_08735 PF02690 Na+/Pi-cotransporter NJU99_08745 PF00563 EAL domain NJU99_08745 PF08448 PAS fold NJU99_08745 PF00990 Diguanylate cyclase, GGDEF domain NJU99_08750 PF00270 DEAD/DEAH box helicase NJU99_08750 PF00271 Helicase conserved C-terminal domain NJU99_08765 PF00700 Bacterial flagellin C-terminal helical region NJU99_08765 PF00669 Bacterial flagellin N-terminal helical region NJU99_08780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_08785 PF00072 Response regulator receiver domain NJU99_08785 PF00486 Transcriptional regulatory protein, C terminal NJU99_08810 PF08269 Cache domain NJU99_08810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_08810 PF08269 Cache domain NJU99_08810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_08815 PF00664 ABC transporter transmembrane region NJU99_08815 PF00005 ABC transporter NJU99_08820 PF01594 AI-2E family transporter NJU99_08970 PF03354 Phage Terminase NJU99_08995 PF03796 DnaB-like helicase C terminal domain NJU99_08995 PF00772 DnaB-like helicase N terminal domain NJU99_09080 PF00589 Phage integrase family NJU99_09080 PF14659 Phage integrase, N-terminal SAM-like domain NJU99_09095 PF07517 SecA DEAD-like domain NJU99_09095 PF02810 SEC-C motif NJU99_09095 PF00271 Helicase conserved C-terminal domain NJU99_09095 PF01043 SecA preprotein cross-linking domain NJU99_09095 PF07516 SecA Wing and Scaffold domain NJU99_09100 PF02687 FtsX-like permease family NJU99_09100 PF12704 MacB-like periplasmic core domain NJU99_09105 PF00512 His Kinase A (phospho-acceptor) domain NJU99_09105 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJU99_09105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_09115 PF11849 Domain of unknown function (DUF3369) NJU99_09125 PF02618 YceG-like family NJU99_09130 PF03971 Monomeric isocitrate dehydrogenase NJU99_09135 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NJU99_09135 PF00056 lactate/malate dehydrogenase, NAD binding domain NJU99_09165 PF01266 FAD dependent oxidoreductase NJU99_09165 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NJU99_09175 PF00226 DnaJ domain NJU99_09175 PF01556 DnaJ C terminal domain NJU99_09180 PF13411 MerR HTH family regulatory protein NJU99_09185 PF00091 Tubulin/FtsZ family, GTPase domain NJU99_09185 PF12327 FtsZ family, C-terminal domain NJU99_09190 PF02491 SHS2 domain inserted in FTSA NJU99_09200 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NJU99_09200 PF13538 UvrD-like helicase C-terminal domain NJU99_09200 PF14490 Helix-hairpin-helix containing domain NJU99_09210 PF03960 ArsC family NJU99_09220 PF05199 GMC oxidoreductase NJU99_09220 PF00732 GMC oxidoreductase NJU99_09245 PF03717 Penicillin-binding Protein dimerisation domain NJU99_09245 PF00905 Penicillin binding protein transpeptidase domain NJU99_09250 PF07670 Nucleoside recognition NJU99_09255 PF00813 FliP family NJU99_09260 PF00512 His Kinase A (phospho-acceptor) domain NJU99_09260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_09265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJU99_09275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJU99_09280 PF00873 AcrB/AcrD/AcrF family NJU99_09285 PF00873 AcrB/AcrD/AcrF family NJU99_09315 PF01926 50S ribosome-binding GTPase NJU99_09335 PF00475 Imidazoleglycerol-phosphate dehydratase NJU99_09340 PF05036 Sporulation related domain NJU99_09340 PF03330 Lytic transglycolase NJU99_09345 PF01026 TatD related DNase NJU99_09355 PF07724 AAA domain (Cdc48 subfamily) NJU99_09355 PF10431 C-terminal, D2-small domain, of ClpB protein NJU99_09360 PF00227 Proteasome subunit NJU99_09365 PF01281 Ribosomal protein L9, N-terminal domain NJU99_09365 PF03948 Ribosomal protein L9, C-terminal domain NJU99_09375 PF00072 Response regulator receiver domain NJU99_09375 PF00486 Transcriptional regulatory protein, C terminal NJU99_09385 PF00239 Resolvase, N terminal domain NJU99_09385 PF02796 Helix-turn-helix domain of resolvase NJU99_09390 PF02441 Flavoprotein NJU99_09395 PF01467 Cytidylyltransferase-like NJU99_09400 PF02223 Thymidylate kinase NJU99_09405 PF13393 Histidyl-tRNA synthetase NJU99_09405 PF03129 Anticodon binding domain NJU99_09410 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NJU99_09410 PF17944 Arginine decarboxylase C-terminal helical extension NJU99_09410 PF17810 Arginine decarboxylase helical bundle domain NJU99_09415 PF06426 Serine acetyltransferase, N-terminal NJU99_09415 PF00132 Bacterial transferase hexapeptide (six repeats) NJU99_09440 PF00990 Diguanylate cyclase, GGDEF domain NJU99_09440 PF00072 Response regulator receiver domain NJU99_09445 PF00330 Aconitase family (aconitate hydratase) NJU99_09445 PF00694 Aconitase C-terminal domain NJU99_09455 PF17760 UvrA interaction domain NJU99_09455 PF17755 UvrA DNA-binding domain NJU99_09470 PF00571 CBS domain NJU99_09470 PF03471 Transporter associated domain NJU99_09470 PF01595 Cyclin M transmembrane N-terminal domain NJU99_09475 PF00194 Eukaryotic-type carbonic anhydrase NJU99_09490 PF01594 AI-2E family transporter NJU99_09525 PF08448 PAS fold NJU99_09525 PF00990 Diguanylate cyclase, GGDEF domain NJU99_09525 PF00563 EAL domain NJU99_09535 PF07690 Major Facilitator Superfamily NJU99_09545 PF03449 Transcription elongation factor, N-terminal NJU99_09545 PF01272 Transcription elongation factor, GreA/GreB, C-term NJU99_09550 PF00990 Diguanylate cyclase, GGDEF domain NJU99_09550 PF05230 MASE2 domain NJU99_09555 PF13493 Domain of unknown function (DUF4118) NJU99_09555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_09555 PF00512 His Kinase A (phospho-acceptor) domain NJU99_09555 PF00989 PAS fold NJU99_09555 PF08447 PAS fold NJU99_09555 PF13426 PAS domain NJU99_09560 PF13426 PAS domain NJU99_09560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_09560 PF00512 His Kinase A (phospho-acceptor) domain NJU99_09560 PF08448 PAS fold NJU99_09560 PF00072 Response regulator receiver domain NJU99_09570 PF17746 SfsA N-terminal OB domain NJU99_09570 PF03749 Sugar fermentation stimulation protein RE domain NJU99_09585 PF01595 Cyclin M transmembrane N-terminal domain NJU99_09585 PF00571 CBS domain NJU99_09590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_09590 PF00512 His Kinase A (phospho-acceptor) domain NJU99_09590 PF13493 Domain of unknown function (DUF4118) NJU99_09590 PF02702 Osmosensitive K+ channel His kinase sensor domain NJU99_09610 PF07995 Glucose / Sorbosone dehydrogenase NJU99_09615 PF00270 DEAD/DEAH box helicase NJU99_09615 PF00271 Helicase conserved C-terminal domain NJU99_09620 PF00561 alpha/beta hydrolase fold NJU99_09630 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NJU99_09630 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NJU99_09650 PF00561 alpha/beta hydrolase fold NJU99_09680 PF01479 S4 domain NJU99_09680 PF00849 RNA pseudouridylate synthase NJU99_09690 PF05099 Tellurite resistance protein TerB NJU99_09690 PF00226 DnaJ domain NJU99_09705 PF11890 Domain of unknown function (DUF3410) NJU99_09705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJU99_09705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NJU99_09710 PF00072 Response regulator receiver domain NJU99_09710 PF01584 CheW-like domain NJU99_09715 PF00849 RNA pseudouridylate synthase NJU99_09740 PF00958 GMP synthase C terminal domain NJU99_09740 PF02540 NAD synthase NJU99_09740 PF00117 Glutamine amidotransferase class-I NJU99_09745 PF03600 Citrate transporter NJU99_09750 PF02910 Fumarate reductase flavoprotein C-term NJU99_09750 PF00890 FAD binding domain NJU99_09765 PF00155 Aminotransferase class I and II NJU99_09770 PF16916 Dimerisation domain of Zinc Transporter NJU99_09770 PF01545 Cation efflux family NJU99_09780 PF01966 HD domain NJU99_09785 PF00211 Adenylate and Guanylate cyclase catalytic domain NJU99_09800 PF00005 ABC transporter NJU99_09800 PF16326 ABC transporter C-terminal domain NJU99_09800 PF12848 ABC transporter NJU99_09810 PF00990 Diguanylate cyclase, GGDEF domain NJU99_09820 PF13840 ACT domain NJU99_09820 PF00696 Amino acid kinase family NJU99_09825 PF00486 Transcriptional regulatory protein, C terminal NJU99_09825 PF00072 Response regulator receiver domain NJU99_09835 PF06339 Ectoine synthase NJU99_09840 PF00202 Aminotransferase class-III NJU99_09845 PF00583 Acetyltransferase (GNAT) family NJU99_09850 PF00990 Diguanylate cyclase, GGDEF domain NJU99_09855 PF03480 Bacterial extracellular solute-binding protein, family 7 NJU99_09860 PF00563 EAL domain NJU99_09860 PF03707 Bacterial signalling protein N terminal repeat NJU99_09860 PF00990 Diguanylate cyclase, GGDEF domain NJU99_09865 PF00392 Bacterial regulatory proteins, gntR family NJU99_09865 PF07729 FCD domain NJU99_09875 PF01568 Molydopterin dinucleotide binding domain NJU99_09875 PF00384 Molybdopterin oxidoreductase NJU99_09885 PF02028 BCCT, betaine/carnitine/choline family transporter NJU99_09895 PF00171 Aldehyde dehydrogenase family NJU99_09915 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NJU99_09915 PF00749 tRNA synthetases class I (E and Q), catalytic domain NJU99_09920 PF00005 ABC transporter NJU99_09920 PF16326 ABC transporter C-terminal domain NJU99_09920 PF12848 ABC transporter NJU99_09925 PF08448 PAS fold NJU99_09925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_09925 PF08447 PAS fold NJU99_09935 PF08269 Cache domain NJU99_09935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_09945 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NJU99_09945 PF12008 Type I restriction and modification enzyme - subunit R C terminal NJU99_09945 PF18766 SWI2/SNF2 ATPase NJU99_09960 PF02384 N-6 DNA Methylase NJU99_09960 PF12161 HsdM N-terminal domain NJU99_09990 PF00106 short chain dehydrogenase NJU99_09995 PF03553 Na+/H+ antiporter family NJU99_10005 PF00990 Diguanylate cyclase, GGDEF domain NJU99_10010 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJU99_10010 PF01464 Transglycosylase SLT domain NJU99_10020 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding NJU99_10020 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_10020 PF10518 TAT (twin-arginine translocation) pathway signal sequence NJU99_10030 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_10030 PF12911 N-terminal TM domain of oligopeptide transport permease C NJU99_10040 PF12072 Domain of unknown function (DUF3552) NJU99_10040 PF01966 HD domain NJU99_10040 PF00013 KH domain NJU99_10050 PF00578 AhpC/TSA family NJU99_10055 PF00448 SRP54-type protein, GTPase domain NJU99_10075 PF18073 Rubredoxin metal binding domain NJU99_10080 PF02130 Uncharacterized protein family UPF0054 NJU99_10085 PF01699 Sodium/calcium exchanger protein NJU99_10095 PF02915 Rubrerythrin NJU99_10100 PF02915 Rubrerythrin NJU99_10110 PF03023 Lipid II flippase MurJ NJU99_10115 PF00664 ABC transporter transmembrane region NJU99_10115 PF00005 ABC transporter NJU99_10120 PF01180 Dihydroorotate dehydrogenase NJU99_10135 PF00701 Dihydrodipicolinate synthetase family NJU99_10145 PF01066 CDP-alcohol phosphatidyltransferase NJU99_10150 PF02163 Peptidase family M50 NJU99_10150 PF17820 PDZ domain NJU99_10155 PF01168 Alanine racemase, N-terminal domain NJU99_10160 PF00218 Indole-3-glycerol phosphate synthase NJU99_10170 PF03692 Putative zinc- or iron-chelating domain NJU99_10175 PF05175 Methyltransferase small domain NJU99_10185 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NJU99_10185 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NJU99_10185 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NJU99_10190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJU99_10200 PF13291 ACT domain NJU99_10200 PF02824 TGS domain NJU99_10200 PF04607 Region found in RelA / SpoT proteins NJU99_10205 PF14480 DNA polymerase III polC-type N-terminus I NJU99_10205 PF11490 DNA polymerase III polC-type N-terminus II NJU99_10205 PF07733 Bacterial DNA polymerase III alpha NTPase domain NJU99_10205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NJU99_10205 PF14579 Helix-hairpin-helix motif NJU99_10205 PF02811 PHP domain NJU99_10205 PF00929 Exonuclease NJU99_10210 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NJU99_10215 PF00834 Ribulose-phosphate 3 epimerase family NJU99_10220 PF02253 Phospholipase A1 NJU99_10230 PF00293 NUDIX domain NJU99_10235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_10240 PF00072 Response regulator receiver domain NJU99_10240 PF00486 Transcriptional regulatory protein, C terminal NJU99_10250 PF04461 Protein of unknown function (DUF520) NJU99_10255 PF00860 Permease family NJU99_10275 PF04241 Protein of unknown function (DUF423) NJU99_10285 PF00156 Phosphoribosyl transferase domain NJU99_10290 PF00860 Permease family NJU99_10295 PF00155 Aminotransferase class I and II NJU99_10340 PF04055 Radical SAM superfamily NJU99_10345 PF01208 Uroporphyrinogen decarboxylase (URO-D) NJU99_10355 PF02774 Semialdehyde dehydrogenase, dimerisation domain NJU99_10355 PF01118 Semialdehyde dehydrogenase, NAD binding domain NJU99_10360 PF03989 DNA gyrase C-terminal domain, beta-propeller NJU99_10360 PF00521 DNA gyrase/topoisomerase IV, subunit A NJU99_10370 PF01960 ArgJ family NJU99_10375 PF07885 Ion channel NJU99_10375 PF02254 TrkA-N domain NJU99_10380 PF00830 Ribosomal L28 family NJU99_10395 PF00535 Glycosyl transferase family 2 NJU99_10400 PF01522 Polysaccharide deacetylase NJU99_10405 PF00534 Glycosyl transferases group 1 NJU99_10405 PF13439 Glycosyltransferase Family 4 NJU99_10415 PF00534 Glycosyl transferases group 1 NJU99_10420 PF01522 Polysaccharide deacetylase NJU99_10450 PF00037 4Fe-4S binding domain NJU99_10460 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_10460 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NJU99_10465 PF01645 Conserved region in glutamate synthase NJU99_10465 PF04898 Glutamate synthase central domain NJU99_10465 PF00310 Glutamine amidotransferases class-II NJU99_10465 PF01493 GXGXG motif NJU99_10470 PF03480 Bacterial extracellular solute-binding protein, family 7 NJU99_10475 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NJU99_10480 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NJU99_10500 PF00512 His Kinase A (phospho-acceptor) domain NJU99_10500 PF09308 LuxQ, periplasmic NJU99_10500 PF00072 Response regulator receiver domain NJU99_10500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_10505 PF13536 Putative multidrug resistance efflux transporter NJU99_10510 PF00171 Aldehyde dehydrogenase family NJU99_10515 PF00582 Universal stress protein family NJU99_10520 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NJU99_10530 PF03480 Bacterial extracellular solute-binding protein, family 7 NJU99_10535 PF00202 Aminotransferase class-III NJU99_10540 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_10555 PF08447 PAS fold NJU99_10555 PF08448 PAS fold NJU99_10555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_10560 PF00072 Response regulator receiver domain NJU99_10560 PF00486 Transcriptional regulatory protein, C terminal NJU99_10565 PF00072 Response regulator receiver domain NJU99_10565 PF00486 Transcriptional regulatory protein, C terminal NJU99_10575 PF13472 GDSL-like Lipase/Acylhydrolase family NJU99_10580 PF00005 ABC transporter NJU99_10615 PF01966 HD domain NJU99_10615 PF13286 Phosphohydrolase-associated domain NJU99_10625 PF00842 Alanine racemase, C-terminal domain NJU99_10625 PF01168 Alanine racemase, N-terminal domain NJU99_10630 PF01235 Sodium:alanine symporter family NJU99_10635 PF01266 FAD dependent oxidoreductase NJU99_10640 PF01042 Endoribonuclease L-PSP NJU99_10645 PF13309 HTH domain NJU99_10645 PF08348 YheO-like PAS domain NJU99_10665 PF12833 Helix-turn-helix domain NJU99_10675 PF08448 PAS fold NJU99_10675 PF08447 PAS fold NJU99_10675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_10680 PF00072 Response regulator receiver domain NJU99_10680 PF00196 Bacterial regulatory proteins, luxR family NJU99_10690 PF00082 Subtilase family NJU99_10735 PF00107 Zinc-binding dehydrogenase NJU99_10735 PF08240 Alcohol dehydrogenase GroES-like domain NJU99_10740 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NJU99_10745 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_10750 PF00571 CBS domain NJU99_10750 PF00005 ABC transporter NJU99_10755 PF02028 BCCT, betaine/carnitine/choline family transporter NJU99_10760 PF00512 His Kinase A (phospho-acceptor) domain NJU99_10760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_10760 PF00672 HAMP domain NJU99_10770 PF13344 Haloacid dehalogenase-like hydrolase NJU99_10770 PF00293 NUDIX domain NJU99_10775 PF00990 Diguanylate cyclase, GGDEF domain NJU99_10775 PF00072 Response regulator receiver domain NJU99_10835 PF00990 Diguanylate cyclase, GGDEF domain NJU99_10840 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NJU99_10845 PF01029 NusB family NJU99_10850 PF00885 6,7-dimethyl-8-ribityllumazine synthase NJU99_10855 PF00793 DAHP synthetase I family NJU99_10870 PF00310 Glutamine amidotransferases class-II NJU99_10870 PF04898 Glutamate synthase central domain NJU99_10870 PF01645 Conserved region in glutamate synthase NJU99_10870 PF01493 GXGXG motif NJU99_10880 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NJU99_10910 PF00437 Type II/IV secretion system protein NJU99_10915 PF03958 Bacterial type II/III secretion system short domain NJU99_10915 PF00263 Bacterial type II and III secretion system protein NJU99_10945 PF00482 Type II secretion system (T2SS), protein F NJU99_10955 PF08334 Type II secretion system (T2SS), protein G NJU99_10955 PF07963 Prokaryotic N-terminal methylation motif NJU99_10960 PF01205 Uncharacterized protein family UPF0029 NJU99_10960 PF09186 Domain of unknown function (DUF1949) NJU99_10965 PF01728 FtsJ-like methyltransferase NJU99_10965 PF01479 S4 domain NJU99_10990 PF13649 Methyltransferase domain NJU99_10995 PF00578 AhpC/TSA family NJU99_11005 PF02913 FAD linked oxidases, C-terminal domain NJU99_11005 PF01565 FAD binding domain NJU99_11010 PF03631 Virulence factor BrkB NJU99_11060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NJU99_11060 PF00529 HlyD membrane-fusion protein of T1SS NJU99_11065 PF03412 Peptidase C39 family NJU99_11065 PF00005 ABC transporter NJU99_11065 PF00664 ABC transporter transmembrane region NJU99_11075 PF00953 Glycosyl transferase family 4 NJU99_11080 PF01370 NAD dependent epimerase/dehydratase family NJU99_11085 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NJU99_11085 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NJU99_11085 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NJU99_11105 PF00534 Glycosyl transferases group 1 NJU99_11105 PF09318 Glycosyl transferase 1 domain A NJU99_11110 PF13439 Glycosyltransferase Family 4 NJU99_11110 PF00534 Glycosyl transferases group 1 NJU99_11125 PF00535 Glycosyl transferase family 2 NJU99_11125 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NJU99_11130 PF00534 Glycosyl transferases group 1 NJU99_11130 PF13439 Glycosyltransferase Family 4 NJU99_11140 PF02563 Polysaccharide biosynthesis/export protein NJU99_11145 PF02706 Chain length determinant protein NJU99_11145 PF13807 G-rich domain on putative tyrosine kinase NJU99_11145 PF13614 AAA domain NJU99_11160 PF00072 Response regulator receiver domain NJU99_11160 PF01339 CheB methylesterase NJU99_11165 PF01048 Phosphorylase superfamily NJU99_11170 PF00698 Acyl transferase domain NJU99_11175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJU99_11190 PF04052 TolB amino-terminal domain NJU99_11200 PF02472 Biopolymer transport protein ExbD/TolR NJU99_11205 PF01618 MotA/TolQ/ExbB proton channel family NJU99_11210 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NJU99_11215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJU99_11215 PF02874 ATP synthase alpha/beta family, beta-barrel domain NJU99_11220 PF00231 ATP synthase NJU99_11225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJU99_11225 PF00306 ATP synthase alpha/beta chain, C terminal domain NJU99_11225 PF02874 ATP synthase alpha/beta family, beta-barrel domain NJU99_11230 PF00213 ATP synthase delta (OSCP) subunit NJU99_11235 PF00430 ATP synthase B/B' CF(0) NJU99_11245 PF02195 ParB-like nuclease domain NJU99_11245 PF17762 HTH domain found in ParB protein NJU99_11250 PF13614 AAA domain NJU99_11255 PF02237 Biotin protein ligase C terminal domain NJU99_11255 PF03099 Biotin/lipoate A/B protein ligase family NJU99_11255 PF08279 HTH domain NJU99_11265 PF00551 Formyl transferase NJU99_11265 PF02911 Formyl transferase, C-terminal domain NJU99_11270 PF00696 Amino acid kinase family NJU99_11275 PF01018 GTP1/OBG NJU99_11275 PF01926 50S ribosome-binding GTPase NJU99_11280 PF01016 Ribosomal L27 protein NJU99_11285 PF00829 Ribosomal prokaryotic L21 protein NJU99_11290 PF01042 Endoribonuclease L-PSP NJU99_11295 PF08275 DNA primase catalytic core, N-terminal domain NJU99_11295 PF13662 Toprim domain NJU99_11295 PF16730 DnaG-primase C-terminal, helicase-binding domain NJU99_11295 PF01807 CHC2 zinc finger NJU99_11305 PF00075 RNase H NJU99_11310 PF14622 Ribonuclease-III-like NJU99_11310 PF00035 Double-stranded RNA binding motif NJU99_11315 PF01264 Chorismate synthase NJU99_11320 PF01435 Peptidase family M48 NJU99_11330 PF01926 50S ribosome-binding GTPase NJU99_11330 PF12631 MnmE helical domain NJU99_11330 PF10396 GTP-binding protein TrmE N-terminus NJU99_11340 PF02096 60Kd inner membrane protein NJU99_11340 PF14849 YidC periplasmic domain NJU99_11345 PF01809 Putative membrane protein insertion efficiency factor NJU99_11350 PF00468 Ribosomal protein L34 NJU99_11355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_11355 PF00512 His Kinase A (phospho-acceptor) domain NJU99_11355 PF00989 PAS fold NJU99_11355 PF08447 PAS fold NJU99_11360 PF02861 Clp amino terminal domain, pathogenicity island component NJU99_11360 PF10431 C-terminal, D2-small domain, of ClpB protein NJU99_11360 PF17871 AAA lid domain NJU99_11360 PF00004 ATPase family associated with various cellular activities (AAA) NJU99_11360 PF07724 AAA domain (Cdc48 subfamily) NJU99_11365 PF00512 His Kinase A (phospho-acceptor) domain NJU99_11365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_11375 PF08448 PAS fold NJU99_11375 PF08447 PAS fold NJU99_11375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_11380 PF00989 PAS fold NJU99_11380 PF00512 His Kinase A (phospho-acceptor) domain NJU99_11380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_11380 PF16736 Single Cache-like NJU99_11385 PF01351 Ribonuclease HII NJU99_11415 PF01625 Peptide methionine sulfoxide reductase NJU99_11420 PF01641 SelR domain NJU99_11425 PF01557 Fumarylacetoacetate (FAA) hydrolase family NJU99_11435 PF00293 NUDIX domain NJU99_11440 PF00202 Aminotransferase class-III NJU99_11445 PF08448 PAS fold NJU99_11445 PF08447 PAS fold NJU99_11445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_11455 PF03601 Conserved hypothetical protein 698 NJU99_11460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NJU99_11460 PF03466 LysR substrate binding domain NJU99_11475 PF13439 Glycosyltransferase Family 4 NJU99_11475 PF00534 Glycosyl transferases group 1 NJU99_11485 PF01808 AICARFT/IMPCHase bienzyme NJU99_11485 PF02142 MGS-like domain NJU99_11490 PF00586 AIR synthase related protein, N-terminal domain NJU99_11490 PF02769 AIR synthase related protein, C-terminal domain NJU99_11490 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NJU99_11500 PF01476 LysM domain NJU99_11500 PF01551 Peptidase family M23 NJU99_11500 PF08525 Opacity-associated protein A N-terminal motif NJU99_11505 PF00571 CBS domain NJU99_11505 PF01769 Divalent cation transporter NJU99_11505 PF03448 MgtE intracellular N domain NJU99_11510 PF01227 GTP cyclohydrolase I NJU99_11515 PF00482 Type II secretion system (T2SS), protein F NJU99_11520 PF00437 Type II/IV secretion system protein NJU99_11535 PF07650 KH domain NJU99_11535 PF01926 50S ribosome-binding GTPase NJU99_11540 PF01078 Magnesium chelatase, subunit ChlI NJU99_11540 PF13335 Magnesium chelatase, subunit ChlI C-terminal NJU99_11545 PF02203 Tar ligand binding domain homologue NJU99_11545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_11545 PF00672 HAMP domain NJU99_11550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_11550 PF08447 PAS fold NJU99_11560 PF01327 Polypeptide deformylase NJU99_11565 PF00574 Clp protease NJU99_11570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NJU99_11570 PF05698 Bacterial trigger factor protein (TF) C-terminus NJU99_11570 PF05697 Bacterial trigger factor protein (TF) NJU99_11575 PF13519 von Willebrand factor type A domain NJU99_11580 PF03976 Polyphosphate kinase 2 (PPK2) NJU99_11585 PF03976 Polyphosphate kinase 2 (PPK2) NJU99_11590 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NJU99_11595 PF00301 Rubredoxin NJU99_11600 PF03435 Saccharopine dehydrogenase NADP binding domain NJU99_11600 PF16653 Saccharopine dehydrogenase C-terminal domain NJU99_11650 PF03707 Bacterial signalling protein N terminal repeat NJU99_11650 PF00990 Diguanylate cyclase, GGDEF domain NJU99_11650 PF00563 EAL domain NJU99_11655 PF03150 Di-haem cytochrome c peroxidase NJU99_11655 PF00034 Cytochrome c NJU99_11655 PF14376 Haem-binding domain NJU99_11690 PF00258 Flavodoxin NJU99_11695 PF01475 Ferric uptake regulator family NJU99_11740 PF07670 Nucleoside recognition NJU99_11740 PF07664 Ferrous iron transport protein B C terminus NJU99_11740 PF02421 Ferrous iron transport protein B NJU99_11745 PF08448 PAS fold NJU99_11745 PF00990 Diguanylate cyclase, GGDEF domain NJU99_11750 PF01475 Ferric uptake regulator family NJU99_11770 PF04377 Arginine-tRNA-protein transferase, C terminus NJU99_11770 PF04376 Arginine-tRNA-protein transferase, N terminus NJU99_11775 PF00290 Tryptophan synthase alpha chain NJU99_11780 PF00512 His Kinase A (phospho-acceptor) domain NJU99_11780 PF00989 PAS fold NJU99_11780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_11785 PF02548 Ketopantoate hydroxymethyltransferase NJU99_11790 PF05496 Holliday junction DNA helicase RuvB P-loop domain NJU99_11790 PF05491 RuvB C-terminal winged helix domain NJU99_11790 PF17864 RuvB AAA lid domain NJU99_11795 PF01594 AI-2E family transporter NJU99_11800 PF04055 Radical SAM superfamily NJU99_11805 PF03099 Biotin/lipoate A/B protein ligase family NJU99_11810 PF17831 Pyruvate dehydrogenase E1 component middle domain NJU99_11810 PF00456 Transketolase, thiamine diphosphate binding domain NJU99_11815 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NJU99_11815 PF02817 e3 binding domain NJU99_11815 PF00364 Biotin-requiring enzyme NJU99_11820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJU99_11820 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_11835 PF01930 Domain of unknown function DUF83 NJU99_11845 PF01867 CRISPR associated protein Cas1 NJU99_11865 PF01966 HD domain NJU99_11870 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NJU99_11880 PF00700 Bacterial flagellin C-terminal helical region NJU99_11880 PF00669 Bacterial flagellin N-terminal helical region NJU99_11885 PF10431 C-terminal, D2-small domain, of ClpB protein NJU99_11885 PF00004 ATPase family associated with various cellular activities (AAA) NJU99_11885 PF07724 AAA domain (Cdc48 subfamily) NJU99_11885 PF17871 AAA lid domain NJU99_11885 PF02861 Clp amino terminal domain, pathogenicity island component NJU99_11890 PF02617 ATP-dependent Clp protease adaptor protein ClpS NJU99_11905 PF13193 AMP-binding enzyme C-terminal domain NJU99_11905 PF00501 AMP-binding enzyme NJU99_11910 PF01575 MaoC like domain NJU99_11930 PF02203 Tar ligand binding domain homologue NJU99_11930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_11930 PF00672 HAMP domain NJU99_11940 PF01613 Flavin reductase like domain NJU99_11945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_11945 PF00512 His Kinase A (phospho-acceptor) domain NJU99_11975 PF00771 FHIPEP family NJU99_11980 PF00700 Bacterial flagellin C-terminal helical region NJU99_11980 PF00669 Bacterial flagellin N-terminal helical region NJU99_11985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJU99_11985 PF18269 T3SS EscN ATPase C-terminal domain NJU99_11995 PF01312 FlhB HrpN YscU SpaS Family NJU99_12010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJU99_12010 PF00460 Flagella basal body rod protein NJU99_12015 PF02049 Flagellar hook-basal body complex protein FliE NJU99_12025 PF10609 NUBPL iron-transfer P-loop NTPase NJU99_12030 PF00448 SRP54-type protein, GTPase domain NJU99_12055 PF01618 MotA/TolQ/ExbB proton channel family NJU99_12060 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NJU99_12080 PF07559 Flagellar basal body protein FlaE NJU99_12080 PF07196 Flagellin hook IN motif NJU99_12080 PF00460 Flagella basal body rod protein NJU99_12080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJU99_12085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJU99_12085 PF00460 Flagella basal body rod protein NJU99_12085 PF07559 Flagellar basal body protein FlaE NJU99_12105 PF01706 FliG C-terminal domain NJU99_12105 PF14841 FliG middle domain NJU99_12105 PF14842 FliG N-terminal domain NJU99_12110 PF08345 Flagellar M-ring protein C-terminal NJU99_12110 PF01514 Secretory protein of YscJ/FliF family NJU99_12115 PF00460 Flagella basal body rod protein NJU99_12120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJU99_12120 PF00460 Flagella basal body rod protein NJU99_12130 PF00072 Response regulator receiver domain NJU99_12135 PF00460 Flagella basal body rod protein NJU99_12135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NJU99_12150 PF01782 RimM N-terminal domain NJU99_12160 PF00886 Ribosomal protein S16 NJU99_12165 PF02978 Signal peptide binding domain NJU99_12165 PF00448 SRP54-type protein, GTPase domain NJU99_12165 PF02881 SRP54-type protein, helical bundle domain NJU99_12170 PF00849 RNA pseudouridylate synthase NJU99_12170 PF01479 S4 domain NJU99_12175 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NJU99_12185 PF01784 NIF3 (NGG1p interacting factor 3) NJU99_12190 PF02091 Glycyl-tRNA synthetase alpha subunit NJU99_12200 PF01136 Peptidase family U32 NJU99_12205 PF17200 Single Cache domain 2 NJU99_12205 PF00672 HAMP domain NJU99_12205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_12210 PF01966 HD domain NJU99_12210 PF00672 HAMP domain NJU99_12275 PF00174 Oxidoreductase molybdopterin binding domain NJU99_12280 PF13476 AAA domain NJU99_12285 PF01513 ATP-NAD kinase NJU99_12290 PF00679 Elongation factor G C-terminus NJU99_12290 PF14492 Elongation Factor G, domain II NJU99_12290 PF03764 Elongation factor G, domain IV NJU99_12290 PF00009 Elongation factor Tu GTP binding domain NJU99_12290 PF03144 Elongation factor Tu domain 2 NJU99_12295 PF00177 Ribosomal protein S7p/S5e NJU99_12300 PF00164 Ribosomal protein S12/S23 NJU99_12305 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NJU99_12310 PF09962 Uncharacterized conserved protein (DUF2196) NJU99_12320 PF00654 Voltage gated chloride channel NJU99_12325 PF08448 PAS fold NJU99_12325 PF00990 Diguanylate cyclase, GGDEF domain NJU99_12335 PF00005 ABC transporter NJU99_12380 PF00623 RNA polymerase Rpb1, domain 2 NJU99_12380 PF04983 RNA polymerase Rpb1, domain 3 NJU99_12380 PF05000 RNA polymerase Rpb1, domain 4 NJU99_12380 PF04998 RNA polymerase Rpb1, domain 5 NJU99_12380 PF04997 RNA polymerase Rpb1, domain 1 NJU99_12385 PF04563 RNA polymerase beta subunit NJU99_12385 PF04561 RNA polymerase Rpb2, domain 2 NJU99_12385 PF04565 RNA polymerase Rpb2, domain 3 NJU99_12385 PF10385 RNA polymerase beta subunit external 1 domain NJU99_12385 PF00562 RNA polymerase Rpb2, domain 6 NJU99_12385 PF04560 RNA polymerase Rpb2, domain 7 NJU99_12390 PF00542 Ribosomal protein L7/L12 C-terminal domain NJU99_12390 PF16320 Ribosomal protein L7/L12 dimerisation domain NJU99_12395 PF00466 Ribosomal protein L10 NJU99_12400 PF00687 Ribosomal protein L1p/L10e family NJU99_12405 PF00298 Ribosomal protein L11, RNA binding domain NJU99_12405 PF03946 Ribosomal protein L11, N-terminal domain NJU99_12410 PF02357 Transcription termination factor nusG NJU99_12425 PF00471 Ribosomal protein L33 NJU99_12430 PF00009 Elongation factor Tu GTP binding domain NJU99_12430 PF03144 Elongation factor Tu domain 2 NJU99_12430 PF03143 Elongation factor Tu C-terminal domain NJU99_12455 PF08245 Mur ligase middle domain NJU99_12460 PF00953 Glycosyl transferase family 4 NJU99_12460 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NJU99_12465 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NJU99_12465 PF01676 Metalloenzyme superfamily NJU99_12470 PF00005 ABC transporter NJU99_12470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJU99_12475 PF00912 Transglycosylase NJU99_12475 PF00905 Penicillin binding protein transpeptidase domain NJU99_12480 PF00120 Glutamine synthetase, catalytic domain NJU99_12480 PF03951 Glutamine synthetase, beta-Grasp domain NJU99_12490 PF02391 MoaE protein NJU99_12500 PF02621 Menaquinone biosynthesis NJU99_12505 PF02673 Bacitracin resistance protein BacA NJU99_12510 PF04101 Glycosyltransferase family 28 C-terminal domain NJU99_12510 PF03033 Glycosyltransferase family 28 N-terminal domain NJU99_12515 PF01098 Cell cycle protein NJU99_12520 PF00905 Penicillin binding protein transpeptidase domain NJU99_12525 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NJU99_12570 PF00117 Glutamine amidotransferase class-I NJU99_12575 PF13416 Bacterial extracellular solute-binding protein NJU99_12585 PF00005 ABC transporter NJU99_12585 PF08402 TOBE domain NJU99_12590 PF17151 Periplasmic sensor domain NJU99_12590 PF00990 Diguanylate cyclase, GGDEF domain NJU99_12595 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NJU99_12600 PF00155 Aminotransferase class I and II NJU99_12605 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NJU99_12610 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NJU99_12615 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NJU99_12615 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NJU99_12625 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NJU99_12625 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NJU99_12625 PF10531 SLBB domain NJU99_12630 PF00285 Citrate synthase, C-terminal domain NJU99_12635 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NJU99_12635 PF00384 Molybdopterin oxidoreductase NJU99_12635 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal NJU99_12640 PF00146 NADH dehydrogenase NJU99_12645 PF12838 4Fe-4S dicluster domain NJU99_12650 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NJU99_12655 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NJU99_12660 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NJU99_12660 PF00361 Proton-conducting membrane transporter NJU99_12665 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus NJU99_12665 PF00361 Proton-conducting membrane transporter NJU99_12670 PF00361 Proton-conducting membrane transporter NJU99_12675 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NJU99_12680 PF00890 FAD binding domain NJU99_12680 PF02910 Fumarate reductase flavoprotein C-term NJU99_12685 PF13085 2Fe-2S iron-sulfur cluster binding domain NJU99_12685 PF13183 4Fe-4S dicluster domain NJU99_12690 PF00350 Dynamin family NJU99_12695 PF00350 Dynamin family NJU99_12705 PF01863 Protein of unknown function DUF45 NJU99_12710 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NJU99_12710 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NJU99_12730 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NJU99_12730 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NJU99_12745 PF17674 HHH domain NJU99_12745 PF00575 S1 RNA binding domain NJU99_12745 PF09371 Tex-like protein N-terminal domain NJU99_12745 PF16921 Tex protein YqgF-like domain NJU99_12755 PF01042 Endoribonuclease L-PSP NJU99_12765 PF01810 LysE type translocator NJU99_12770 PF01914 MarC family integral membrane protein NJU99_12775 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_12780 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJU99_12785 PF00497 Bacterial extracellular solute-binding proteins, family 3 NJU99_12790 PF00005 ABC transporter NJU99_12825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_12825 PF00512 His Kinase A (phospho-acceptor) domain NJU99_12825 PF00989 PAS fold NJU99_12830 PF00501 AMP-binding enzyme NJU99_12830 PF13193 AMP-binding enzyme C-terminal domain NJU99_12835 PF05853 beta-keto acid cleavage enzyme NJU99_12840 PF08443 RimK-like ATP-grasp domain NJU99_12840 PF08245 Mur ligase middle domain NJU99_12840 PF02875 Mur ligase family, glutamate ligase domain NJU99_12850 PF00501 AMP-binding enzyme NJU99_12850 PF13193 AMP-binding enzyme C-terminal domain NJU99_12860 PF05860 haemagglutination activity domain NJU99_12865 PF13649 Methyltransferase domain NJU99_12870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NJU99_12875 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_12880 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_12885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NJU99_12885 PF00005 ABC transporter NJU99_12890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NJU99_12890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NJU99_12895 PF00186 Dihydrofolate reductase NJU99_12900 PF00303 Thymidylate synthase NJU99_12905 PF09382 RQC domain NJU99_12905 PF16124 RecQ zinc-binding NJU99_12905 PF00570 HRDC domain NJU99_12905 PF00271 Helicase conserved C-terminal domain NJU99_12905 PF00270 DEAD/DEAH box helicase NJU99_12915 PF01810 LysE type translocator NJU99_12930 PF00285 Citrate synthase, C-terminal domain NJU99_12935 PF00694 Aconitase C-terminal domain NJU99_12935 PF00330 Aconitase family (aconitate hydratase) NJU99_12940 PF04303 PrpF protein NJU99_12945 PF00072 Response regulator receiver domain NJU99_12945 PF13188 PAS domain NJU99_12945 PF08448 PAS fold NJU99_12945 PF00512 His Kinase A (phospho-acceptor) domain NJU99_12945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_12950 PF13407 Periplasmic binding protein domain NJU99_12955 PF00857 Isochorismatase family NJU99_12960 PF03831 PhnA domain NJU99_12960 PF08274 PhnA Zinc-Ribbon NJU99_12965 PF03900 Porphobilinogen deaminase, C-terminal domain NJU99_12965 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NJU99_12980 PF01177 Asp/Glu/Hydantoin racemase NJU99_12990 PF03180 NLPA lipoprotein NJU99_12995 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_13000 PF09383 NIL domain NJU99_13000 PF00005 ABC transporter NJU99_13005 PF07497 Rho termination factor, RNA-binding domain NJU99_13005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NJU99_13005 PF07498 Rho termination factor, N-terminal domain NJU99_13010 PF00578 AhpC/TSA family NJU99_13010 PF10417 C-terminal domain of 1-Cys peroxiredoxin NJU99_13015 PF00037 4Fe-4S binding domain NJU99_13020 PF00334 Nucleoside diphosphate kinase NJU99_13030 PF01783 Ribosomal L32p protein family NJU99_13035 PF02504 Fatty acid synthesis protein NJU99_13040 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NJU99_13040 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NJU99_13050 PF03591 AzlC protein NJU99_13065 PF01063 Amino-transferase class IV NJU99_13080 PF00425 chorismate binding enzyme NJU99_13085 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NJU99_13085 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NJU99_13090 PF00202 Aminotransferase class-III NJU99_13100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_13100 PF00512 His Kinase A (phospho-acceptor) domain NJU99_13105 PF00391 PEP-utilising enzyme, mobile domain NJU99_13105 PF00224 Pyruvate kinase, barrel domain NJU99_13105 PF02887 Pyruvate kinase, alpha/beta domain NJU99_13110 PF00691 OmpA family NJU99_13120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_13125 PF00072 Response regulator receiver domain NJU99_13125 PF00486 Transcriptional regulatory protein, C terminal NJU99_13130 PF02597 ThiS family NJU99_13135 PF02021 Uncharacterised protein family UPF0102 NJU99_13140 PF00999 Sodium/hydrogen exchanger family NJU99_13140 PF02254 TrkA-N domain NJU99_13145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_13145 PF00672 HAMP domain NJU99_13145 PF02203 Tar ligand binding domain homologue NJU99_13155 PF12833 Helix-turn-helix domain NJU99_13160 PF00155 Aminotransferase class I and II NJU99_13165 PF00484 Carbonic anhydrase NJU99_13175 PF04055 Radical SAM superfamily NJU99_13185 PF04028 Domain of unknown function (DUF374) NJU99_13190 PF04055 Radical SAM superfamily NJU99_13190 PF01938 TRAM domain NJU99_13190 PF00919 Uncharacterized protein family UPF0004 NJU99_13200 PF08529 NusA N-terminal domain NJU99_13200 PF13184 NusA-like KH domain NJU99_13205 PF01406 tRNA synthetases class I (C) catalytic domain NJU99_13205 PF09190 DALR domain NJU99_13210 PF02028 BCCT, betaine/carnitine/choline family transporter NJU99_13220 PF01084 Ribosomal protein S18 NJU99_13225 PF00436 Single-strand binding protein family NJU99_13230 PF01250 Ribosomal protein S6 NJU99_13240 PF02623 FliW protein NJU99_13245 PF17876 Cold shock domain NJU99_13245 PF08461 Ribonuclease R winged-helix domain NJU99_13245 PF00575 S1 RNA binding domain NJU99_13245 PF00773 RNB domain NJU99_13245 PF08206 Ribonuclease B OB domain NJU99_13250 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NJU99_13250 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NJU99_13310 PF02796 Helix-turn-helix domain of resolvase NJU99_13310 PF00239 Resolvase, N terminal domain NJU99_13325 PF00665 Integrase core domain NJU99_13350 PF06965 Na+/H+ antiporter 1 NJU99_13355 PF01225 Mur ligase family, catalytic domain NJU99_13355 PF02875 Mur ligase family, glutamate ligase domain NJU99_13355 PF08245 Mur ligase middle domain NJU99_13365 PF00155 Aminotransferase class I and II NJU99_13380 PF08448 PAS fold NJU99_13380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_13380 PF08447 PAS fold NJU99_13390 PF00072 Response regulator receiver domain NJU99_13395 PF01702 Queuine tRNA-ribosyltransferase NJU99_13400 PF11741 AMIN domain NJU99_13400 PF00263 Bacterial type II and III secretion system protein NJU99_13400 PF03958 Bacterial type II/III secretion system short domain NJU99_13400 PF07660 Secretin and TonB N terminus short domain NJU99_13425 PF00437 Type II/IV secretion system protein NJU99_13445 PF02686 Glu-tRNAGln amidotransferase C subunit NJU99_13455 PF01474 Class-II DAHP synthetase family NJU99_13460 PF00923 Transaldolase/Fructose-6-phosphate aldolase NJU99_13470 PF03652 Holliday junction resolvase NJU99_13475 PF01648 4'-phosphopantetheinyl transferase superfamily NJU99_13480 PF03783 Curli production assembly/transport component CsgG NJU99_13490 PF05643 Putative bacterial lipoprotein (DUF799) NJU99_13495 PF01047 MarR family NJU99_13500 PF13673 Acetyltransferase (GNAT) domain NJU99_13505 PF00528 Binding-protein-dependent transport system inner membrane component NJU99_13510 PF02569 Pantoate-beta-alanine ligase NJU99_13515 PF04055 Radical SAM superfamily NJU99_13515 PF18693 TRAM domain NJU99_13515 PF00919 Uncharacterized protein family UPF0004 NJU99_13520 PF01171 PP-loop family NJU99_13545 PF02107 Flagellar L-ring protein NJU99_13570 PF01313 Bacterial export proteins, family 3 NJU99_13580 PF02119 Flagellar P-ring protein NJU99_13585 PF02154 Flagellar motor switch protein FliM NJU99_13585 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NJU99_13595 PF00543 Nitrogen regulatory protein P-II NJU99_13600 PF00909 Ammonium Transporter Family NJU99_13605 PF00543 Nitrogen regulatory protein P-II NJU99_13610 PF00909 Ammonium Transporter Family NJU99_13615 PF00672 HAMP domain NJU99_13615 PF02203 Tar ligand binding domain homologue NJU99_13615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_13620 PF00563 EAL domain NJU99_13620 PF12792 CSS motif domain associated with EAL NJU99_13630 PF00512 His Kinase A (phospho-acceptor) domain NJU99_13630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_13640 PF08335 GlnD PII-uridylyltransferase NJU99_13640 PF03445 Putative nucleotidyltransferase DUF294 NJU99_13640 PF01966 HD domain NJU99_13660 PF00501 AMP-binding enzyme NJU99_13660 PF01553 Acyltransferase NJU99_13670 PF02374 Anion-transporting ATPase NJU99_13675 PF06953 Arsenical resistance operon trans-acting repressor ArsD NJU99_13680 PF01451 Low molecular weight phosphotyrosine protein phosphatase NJU99_13685 PF02040 Arsenical pump membrane protein NJU99_13695 PF01022 Bacterial regulatory protein, arsR family NJU99_13700 PF00072 Response regulator receiver domain NJU99_13700 PF00990 Diguanylate cyclase, GGDEF domain NJU99_13705 PF04172 LrgB-like family NJU99_13710 PF03788 LrgA family NJU99_13715 PF13309 HTH domain NJU99_13715 PF08348 YheO-like PAS domain NJU99_13735 PF02779 Transketolase, pyrimidine binding domain NJU99_13735 PF02780 Transketolase, C-terminal domain NJU99_13735 PF00456 Transketolase, thiamine diphosphate binding domain NJU99_13740 PF00672 HAMP domain NJU99_13740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_13740 PF18698 Histidine kinase sensor domain NJU99_13740 PF00512 His Kinase A (phospho-acceptor) domain NJU99_13745 PF00069 Protein kinase domain NJU99_13745 PF03793 PASTA domain NJU99_13780 PF00005 ABC transporter NJU99_13780 PF03412 Peptidase C39 family NJU99_13780 PF00664 ABC transporter transmembrane region NJU99_13790 PF00072 Response regulator receiver domain NJU99_13790 PF12833 Helix-turn-helix domain NJU99_13795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_13795 PF00512 His Kinase A (phospho-acceptor) domain NJU99_13795 PF00989 PAS fold NJU99_13800 PF08240 Alcohol dehydrogenase GroES-like domain NJU99_13800 PF00107 Zinc-binding dehydrogenase NJU99_13820 PF00920 Dehydratase family NJU99_13825 PF17820 PDZ domain NJU99_13825 PF13180 PDZ domain NJU99_13830 PF00486 Transcriptional regulatory protein, C terminal NJU99_13830 PF00072 Response regulator receiver domain NJU99_13845 PF03186 CobD/Cbib protein NJU99_13850 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NJU99_13850 PF07685 CobB/CobQ-like glutamine amidotransferase domain NJU99_13865 PF00072 Response regulator receiver domain NJU99_13865 PF00486 Transcriptional regulatory protein, C terminal NJU99_13870 PF08269 Cache domain NJU99_13870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_13885 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NJU99_13895 PF02580 D-Tyr-tRNA(Tyr) deacylase NJU99_13905 PF00155 Aminotransferase class I and II NJU99_13910 PF02654 Cobalamin-5-phosphate synthase NJU99_13920 PF01914 MarC family integral membrane protein NJU99_13925 PF02277 Phosphoribosyltransferase NJU99_13930 PF11412 Disulphide bond corrector protein DsbC NJU99_13930 PF02683 Cytochrome C biogenesis protein transmembrane region NJU99_13935 PF00085 Thioredoxin NJU99_13940 PF00581 Rhodanese-like domain NJU99_13950 PF00360 Phytochrome region NJU99_13950 PF00563 EAL domain NJU99_13950 PF00990 Diguanylate cyclase, GGDEF domain NJU99_13950 PF01590 GAF domain NJU99_13955 PF02666 Phosphatidylserine decarboxylase NJU99_13960 PF03562 MltA specific insert domain NJU99_13960 PF06725 3D domain NJU99_13975 PF00012 Hsp70 protein NJU99_13980 PF01025 GrpE NJU99_13985 PF01628 HrcA protein C terminal domain NJU99_13990 PF16868 NMT1-like family NJU99_14000 PF00072 Response regulator receiver domain NJU99_14000 PF00158 Sigma-54 interaction domain NJU99_14005 PF02743 Cache domain NJU99_14005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_14005 PF00512 His Kinase A (phospho-acceptor) domain NJU99_14010 PF01416 tRNA pseudouridine synthase NJU99_14020 PF06750 Bacterial Peptidase A24 N-terminal domain NJU99_14020 PF01478 Type IV leader peptidase family NJU99_14025 PF01255 Putative undecaprenyl diphosphate synthase NJU99_14030 PF02441 Flavoprotein NJU99_14030 PF04127 DNA / pantothenate metabolism flavoprotein NJU99_14035 PF14602 Hexapeptide repeat of succinyl-transferase NJU99_14035 PF12804 MobA-like NTP transferase domain NJU99_14045 PF17191 RecG wedge domain NJU99_14045 PF00270 DEAD/DEAH box helicase NJU99_14045 PF00271 Helicase conserved C-terminal domain NJU99_14050 PF05958 tRNA (Uracil-5-)-methyltransferase NJU99_14055 PF00700 Bacterial flagellin C-terminal helical region NJU99_14055 PF00669 Bacterial flagellin N-terminal helical region NJU99_14055 PF07196 Flagellin hook IN motif NJU99_14060 PF00669 Bacterial flagellin N-terminal helical region NJU99_14060 PF00700 Bacterial flagellin C-terminal helical region NJU99_14060 PF07196 Flagellin hook IN motif NJU99_14065 PF00700 Bacterial flagellin C-terminal helical region NJU99_14065 PF07196 Flagellin hook IN motif NJU99_14065 PF00669 Bacterial flagellin N-terminal helical region NJU99_14070 PF00700 Bacterial flagellin C-terminal helical region NJU99_14070 PF07196 Flagellin hook IN motif NJU99_14070 PF00669 Bacterial flagellin N-terminal helical region NJU99_14075 PF00700 Bacterial flagellin C-terminal helical region NJU99_14075 PF07196 Flagellin hook IN motif NJU99_14075 PF00669 Bacterial flagellin N-terminal helical region NJU99_14080 PF00700 Bacterial flagellin C-terminal helical region NJU99_14080 PF07196 Flagellin hook IN motif NJU99_14080 PF00669 Bacterial flagellin N-terminal helical region NJU99_14085 PF00700 Bacterial flagellin C-terminal helical region NJU99_14085 PF00669 Bacterial flagellin N-terminal helical region NJU99_14085 PF07196 Flagellin hook IN motif NJU99_14105 PF03102 NeuB family NJU99_14105 PF08666 SAF domain NJU99_14110 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ NJU99_14135 PF02348 Cytidylyltransferase NJU99_14140 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NJU99_14145 PF02719 Polysaccharide biosynthesis protein NJU99_14150 PF13580 SIS domain NJU99_14165 PF00456 Transketolase, thiamine diphosphate binding domain NJU99_14170 PF02779 Transketolase, pyrimidine binding domain NJU99_14190 PF01209 ubiE/COQ5 methyltransferase family NJU99_14195 PF16363 GDP-mannose 4,6 dehydratase NJU99_14200 PF08240 Alcohol dehydrogenase GroES-like domain NJU99_14200 PF00107 Zinc-binding dehydrogenase NJU99_14205 PF00294 pfkB family carbohydrate kinase NJU99_14205 PF01467 Cytidylyltransferase-like NJU99_14210 PF02310 B12 binding domain NJU99_14210 PF04055 Radical SAM superfamily NJU99_14215 PF00483 Nucleotidyl transferase NJU99_14225 PF00154 recA bacterial DNA recombination protein NJU99_14230 PF00113 Enolase, C-terminal TIM barrel domain NJU99_14230 PF03952 Enolase, N-terminal domain NJU99_14245 PF00999 Sodium/hydrogen exchanger family NJU99_14245 PF02080 TrkA-C domain NJU99_14245 PF02254 TrkA-N domain NJU99_14250 PF04055 Radical SAM superfamily NJU99_14250 PF06968 Biotin and Thiamin Synthesis associated domain NJU99_14260 PF13368 Topoisomerase C-terminal repeat NJU99_14260 PF01751 Toprim domain NJU99_14260 PF01131 DNA topoisomerase NJU99_14265 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NJU99_14270 PF02621 Menaquinone biosynthesis NJU99_14280 PF00361 Proton-conducting membrane transporter NJU99_14285 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus NJU99_14285 PF00361 Proton-conducting membrane transporter NJU99_14290 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NJU99_14290 PF00361 Proton-conducting membrane transporter NJU99_14295 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NJU99_14300 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NJU99_14305 PF12838 4Fe-4S dicluster domain NJU99_14310 PF00146 NADH dehydrogenase NJU99_14315 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal NJU99_14315 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NJU99_14315 PF00384 Molybdopterin oxidoreductase NJU99_14330 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NJU99_14335 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NJU99_14340 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NJU99_14345 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NJU99_14350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_14350 PF00672 HAMP domain NJU99_14350 PF02203 Tar ligand binding domain homologue NJU99_14360 PF00004 ATPase family associated with various cellular activities (AAA) NJU99_14360 PF17758 Proteasomal ATPase OB N-terminal domain NJU99_14360 PF16450 Proteasomal ATPase OB C-terminal domain NJU99_14385 PF01261 Xylose isomerase-like TIM barrel NJU99_14390 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_14400 PF02677 Epoxyqueuosine reductase QueH NJU99_14405 PF02684 Lipid-A-disaccharide synthetase NJU99_14410 PF07977 FabA-like domain NJU99_14415 PF00132 Bacterial transferase hexapeptide (six repeats) NJU99_14415 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NJU99_14420 PF07724 AAA domain (Cdc48 subfamily) NJU99_14420 PF06689 ClpX C4-type zinc finger NJU99_14420 PF10431 C-terminal, D2-small domain, of ClpB protein NJU99_14435 PF00677 Lumazine binding domain NJU99_14440 PF13932 GidA associated domain NJU99_14440 PF01134 Glucose inhibited division protein A NJU99_14445 PF13687 Domain of unknown function (DUF4153) NJU99_14450 PF07992 Pyridine nucleotide-disulphide oxidoreductase NJU99_14450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NJU99_14455 PF18582 Hydrazine synthase alpha subunit middle domain NJU99_14465 PF07722 Peptidase C26 NJU99_14475 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NJU99_14475 PF12801 4Fe-4S binding domain NJU99_14475 PF13746 4Fe-4S dicluster domain NJU99_14480 PF00117 Glutamine amidotransferase class-I NJU99_14480 PF06418 CTP synthase N-terminus NJU99_14485 PF02272 DHHA1 domain NJU99_14485 PF01368 DHH family NJU99_14485 PF17768 RecJ OB domain NJU99_14510 PF07733 Bacterial DNA polymerase III alpha NTPase domain NJU99_14510 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NJU99_14510 PF14579 Helix-hairpin-helix motif NJU99_14510 PF02811 PHP domain NJU99_14515 PF01975 Survival protein SurE NJU99_14540 PF01967 MoaC family NJU99_14545 PF01165 Ribosomal protein S21 NJU99_14550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_14550 PF00512 His Kinase A (phospho-acceptor) domain NJU99_14550 PF08448 PAS fold NJU99_14550 PF00072 Response regulator receiver domain NJU99_14550 PF13188 PAS domain NJU99_14595 PF01027 Inhibitor of apoptosis-promoting Bax1 NJU99_14600 PF02581 Thiamine monophosphate synthase NJU99_14600 PF17792 ThiD2 family NJU99_14610 PF03840 Preprotein translocase SecG subunit NJU99_14620 PF01765 Ribosome recycling factor NJU99_14625 PF00156 Phosphoribosyl transferase domain NJU99_14630 PF06271 RDD family NJU99_14635 PF12832 MFS_1 like family NJU99_14640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_14640 PF08447 PAS fold NJU99_14645 PF13188 PAS domain NJU99_14645 PF08448 PAS fold NJU99_14645 PF00512 His Kinase A (phospho-acceptor) domain NJU99_14645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_14645 PF00072 Response regulator receiver domain NJU99_14655 PF03883 Peroxide stress protein YaaA NJU99_14665 PF02810 SEC-C motif NJU99_14690 PF03167 Uracil DNA glycosylase superfamily NJU99_14695 PF00171 Aldehyde dehydrogenase family NJU99_14700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NJU99_14700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NJU99_14700 PF00205 Thiamine pyrophosphate enzyme, central domain NJU99_14705 PF13419 Haloacid dehalogenase-like hydrolase NJU99_14720 PF07690 Major Facilitator Superfamily NJU99_14730 PF01814 Hemerythrin HHE cation binding domain NJU99_14740 PF00875 DNA photolyase NJU99_14740 PF03441 FAD binding domain of DNA photolyase NJU99_14785 PF01053 Cys/Met metabolism PLP-dependent enzyme NJU99_14790 PF02082 Transcriptional regulator NJU99_14795 PF00291 Pyridoxal-phosphate dependent enzyme NJU99_14805 PF01507 Phosphoadenosine phosphosulfate reductase family NJU99_14810 PF01507 Phosphoadenosine phosphosulfate reductase family NJU99_14815 PF00009 Elongation factor Tu GTP binding domain NJU99_14820 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NJU99_14820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NJU99_14825 PF00266 Aminotransferase class-V NJU99_14830 PF00149 Calcineurin-like phosphoesterase NJU99_14835 PF08447 PAS fold NJU99_14835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_14840 PF17202 Single cache domain 3 NJU99_14840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NJU99_14840 PF00672 HAMP domain NJU99_14850 PF08447 PAS fold NJU99_14850 PF08448 PAS fold NJU99_14850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NJU99_14855 PF00679 Elongation factor G C-terminus NJU99_14855 PF00009 Elongation factor Tu GTP binding domain NJU99_14855 PF03144 Elongation factor Tu domain 2 NJU99_14860 PF04960 Glutaminase NJU99_14865 PF03458 UPF0126 domain NJU99_14875 PF00893 Small Multidrug Resistance protein NJU99_14880 PF00551 Formyl transferase NJU99_14885 PF02075 Crossover junction endodeoxyribonuclease RuvC