locus-tag	class	description
DJ013_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DJ013_00010	COG0237	dephospho-CoA kinase activity
DJ013_00020	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DJ013_00030	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DJ013_00030	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DJ013_00045	COG0137	argininosuccinate synthase activity
DJ013_00055	COG1321	iron dependent repressor
DJ013_00065	COG1611	Belongs to the LOG family
DJ013_00080	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJ013_00080	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DJ013_00105	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
DJ013_00125	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DJ013_00130	COG0069	glutamate synthase activity
DJ013_00145	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DJ013_00155	COG0433	COG0433 Predicted ATPase
DJ013_00165	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DJ013_00170	COG4974	Belongs to the 'phage' integrase family
DJ013_00195	COG0415	Belongs to the DNA photolyase family
DJ013_00210	COG0596	Alpha beta hydrolase
DJ013_00215	COG3119	arylsulfatase activity
DJ013_00240	COG0802	atpase or kinase
DJ013_00245	COG0768	penicillin binding
DJ013_00250	COG0772	Belongs to the SEDS family
DJ013_00255	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DJ013_00260	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
DJ013_00265	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
DJ013_00270	COG0193	aminoacyl-tRNA hydrolase activity
DJ013_00285	COG2211	Major facilitator Superfamily
DJ013_00355	COG1401	restriction endodeoxyribonuclease activity
DJ013_00360	COG0849	cell division
DJ013_00395	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_00400	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_00405	COG1063	alcohol dehydrogenase
DJ013_00425	COG4206	TonB-dependent receptor
DJ013_00425	COG1629	transport
DJ013_00430	COG2814	Major facilitator Superfamily
DJ013_00440	COG1804	L-carnitine dehydratase bile acid-inducible protein F
DJ013_00455	COG2271	Major facilitator Superfamily
DJ013_00460	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_00470	COG0800	Aldolase
DJ013_00475	COG2207	Transcriptional regulator
DJ013_00490	COG2124	cytochrome p450
DJ013_00495	COG0633	Ferredoxin
DJ013_00510	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
DJ013_00540	COG4206	TonB-dependent receptor
DJ013_00540	COG1629	transport
DJ013_00560	COG1012	belongs to the aldehyde dehydrogenase family
DJ013_00565	COG1024	Enoyl-CoA hydratase
DJ013_00585	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DJ013_00600	COG4585	Histidine kinase
DJ013_00620	COG3119	arylsulfatase activity
DJ013_00635	COG3119	arylsulfatase activity
DJ013_00685	COG0628	permease
DJ013_00730	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
DJ013_00735	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
DJ013_00740	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
DJ013_00750	COG0356	it plays a direct role in the translocation of protons across the membrane
DJ013_00770	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
DJ013_00775	COG0589	response to stress
DJ013_00795	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DJ013_00830	COG3344	reverse transcriptase
DJ013_00850	COG1476	TRANSCRIPTIONal
DJ013_00865	COG1733	regulation of RNA biosynthetic process
DJ013_00890	COG2076	Multidrug Resistance protein
DJ013_00920	COG0517	IMP dehydrogenase activity
DJ013_00970	COG0396	ATPase activity
DJ013_00975	COG0719	Fe-S assembly protein
DJ013_00995	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DJ013_01005	COG2151	metal-sulfur cluster biosynthetic enzyme
DJ013_01020	COG0745	RESPONSE REGULATOR receiver
DJ013_01045	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DJ013_01055	COG0077	Prephenate dehydratase
DJ013_01055	COG1605	Chorismate mutase
DJ013_01060	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DJ013_01075	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DJ013_01080	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DJ013_01100	COG2154	pterin-4-alpha-carbinolamine dehydratase
DJ013_01105	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DJ013_01125	COG1193	negative regulation of DNA recombination
DJ013_01140	COG0228	four-way junction DNA binding
DJ013_01145	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DJ013_01150	COG0336	Belongs to the RNA methyltransferase TrmD family
DJ013_01155	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DJ013_01170	COG2171	N-acyltransferase activity
DJ013_01175	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
DJ013_01180	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DJ013_01185	COG0285	dihydrofolate synthase activity
DJ013_01235	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
DJ013_01240	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DJ013_01245	COG1185	polyribonucleotide nucleotidyltransferase activity
DJ013_01250	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DJ013_01275	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
DJ013_01290	COG1702	phosphate starvation-inducible protein PhoH
DJ013_01295	COG0305	Participates in initiation and elongation during chromosome replication
DJ013_01300	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DJ013_01350	COG1663	tetraacyldisaccharide 4'-kinase activity
DJ013_01360	COG0408	coproporphyrinogen oxidase activity
DJ013_01365	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DJ013_01390	COG0471	metal ion transport
DJ013_01395	COG3645	SOS response
DJ013_01410	COG1301	dicarboxylic acid transport
DJ013_01430	COG0823	Involved in the tonB-independent uptake of proteins
DJ013_01435	COG0791	NLP P60 protein
DJ013_01460	COG0667	Aldo Keto reductase
DJ013_01480	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
DJ013_01505	COG0673	inositol 2-dehydrogenase activity
DJ013_01510	COG0019	diaminopimelate decarboxylase activity
DJ013_01520	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DJ013_01530	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DJ013_01550	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ013_01565	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DJ013_01575	COG5002	protein histidine kinase activity
DJ013_01580	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DJ013_01585	COG2207	Transcriptional regulator
DJ013_01595	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DJ013_01600	COG0484	heat shock protein binding
DJ013_01635	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
DJ013_01650	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DJ013_01670	COG0302	gtp cyclohydrolase
DJ013_01710	COG0745	RESPONSE REGULATOR receiver
DJ013_01745	COG0495	leucyl-tRNA aminoacylation
DJ013_01760	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ013_01785	COG0009	L-threonylcarbamoyladenylate synthase
DJ013_01835	COG3852	Histidine kinase
DJ013_01860	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DJ013_01890	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
DJ013_01895	COG1522	sequence-specific DNA binding
DJ013_01905	COG4412	M6 family metalloprotease domain protein
DJ013_01905	COG3291	Pkd domain containing protein
DJ013_01920	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DJ013_01925	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
DJ013_01930	COG4974	Belongs to the 'phage' integrase family
DJ013_01935	COG2081	HI0933 family
DJ013_01955	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
DJ013_01960	COG3387	PFAM Glycoside hydrolase 15-related
DJ013_01990	COG0174	glutamine synthetase
DJ013_01995	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DJ013_02005	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJ013_02015	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DJ013_02055	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DJ013_02060	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DJ013_02095	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
DJ013_02110	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DJ013_02175	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DJ013_02220	COG0584	glycerophosphoryl diester phosphodiesterase
DJ013_02240	COG1629	transport
DJ013_02240	COG4206	TonB-dependent receptor
DJ013_02265	COG2132	Multicopper oxidase
DJ013_02290	COG3119	arylsulfatase activity
DJ013_02295	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DJ013_02315	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_02320	COG3119	arylsulfatase activity
DJ013_02330	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DJ013_02330	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DJ013_02345	COG2326	polyphosphate kinase activity
DJ013_02350	COG0602	queuosine metabolic process
DJ013_02355	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
DJ013_02395	COG1917	Cupin 2, conserved barrel domain protein
DJ013_02395	COG2169	Transcriptional regulator
DJ013_02430	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJ013_02460	COG0657	acetylesterase activity
DJ013_02460	COG2755	lipolytic protein G-D-S-L family
DJ013_02465	COG2217	Heavy metal translocating P-type atpase
DJ013_02470	COG0513	Belongs to the DEAD box helicase family
DJ013_02565	COG3537	Alpha-1,2-mannosidase
DJ013_02570	COG0561	phosphatase activity
DJ013_02575	COG4206	TonB-dependent receptor
DJ013_02575	COG1629	transport
DJ013_02590	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DJ013_02600	COG4166	transmembrane transport
DJ013_02615	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_02620	COG2186	Transcriptional regulator
DJ013_02655	COG2382	esterase
DJ013_02660	COG0531	amino acid
DJ013_02680	COG0702	epimerase
DJ013_02685	COG0280	phosphate acetyltransferase
DJ013_02685	COG0857	belongs to the CobB CobQ family
DJ013_02690	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DJ013_02730	COG1501	Belongs to the glycosyl hydrolase 31 family
DJ013_02735	COG1595	DNA-templated transcription, initiation
DJ013_02750	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DJ013_02760	COG1752	Esterase of the alpha-beta hydrolase superfamily
DJ013_02845	COG4942	peptidase
DJ013_02870	COG3118	belongs to the thioredoxin family
DJ013_02890	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DJ013_02895	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DJ013_02905	COG0443	Heat shock 70 kDa protein
DJ013_02930	COG1321	iron dependent repressor
DJ013_02930	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DJ013_02945	COG1554	hydrolase, family 65, central catalytic
DJ013_02950	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ013_02955	COG0366	Alpha amylase catalytic
DJ013_03010	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
DJ013_03015	COG0436	Aminotransferase
DJ013_03040	COG4942	peptidase
DJ013_03045	COG0166	Belongs to the GPI family
DJ013_03050	COG3757	hydrolase, family 25
DJ013_03055	COG0450	alkyl hydroperoxide reductase
DJ013_03060	COG1136	(ABC) transporter
DJ013_03120	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
DJ013_03155	COG4221	oxidoreductase activity
DJ013_03175	COG1058	Belongs to the CinA family
DJ013_03175	COG1546	Belongs to the CinA family
DJ013_03180	COG0508	dehydrogenase complex catalyzes the overall conversion of
DJ013_03195	COG3258	Cytochrome c
DJ013_03220	COG0730	response to heat
DJ013_03225	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DJ013_03225	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ013_03245	COG3344	reverse transcriptase
DJ013_03250	COG0456	acetyltransferase
DJ013_03295	COG0739	heme binding
DJ013_03325	COG0708	Exodeoxyribonuclease III
DJ013_03350	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DJ013_03350	COG2885	chlorophyll binding
DJ013_03370	COG0686	Belongs to the AlaDH PNT family
DJ013_03375	COG1522	sequence-specific DNA binding
DJ013_03405	COG1490	D-aminoacyl-tRNA deacylase activity
DJ013_03410	COG2239	Acts as a magnesium transporter
DJ013_03420	COG0004	ammonium transporteR
DJ013_03425	COG0347	Belongs to the P(II) protein family
DJ013_03435	COG0673	inositol 2-dehydrogenase activity
DJ013_03445	COG0673	inositol 2-dehydrogenase activity
DJ013_03455	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
DJ013_03475	COG1999	signal sequence binding
DJ013_03485	COG0497	DNA recombination
DJ013_03495	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
DJ013_03515	COG1595	DNA-templated transcription, initiation
DJ013_03625	COG3655	Transcriptional regulator
DJ013_03650	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
DJ013_03655	COG0681	Belongs to the peptidase S26 family
DJ013_03660	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
DJ013_03670	COG1475	DNA binding
DJ013_03705	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DJ013_03710	COG2884	Cell division ATP-binding protein ftsE
DJ013_03720	COG2204	response regulator
DJ013_03725	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
DJ013_03755	COG2177	Part of the ABC transporter FtsEX involved in
DJ013_03765	COG1968	undecaprenyl-diphosphatase activity
DJ013_03770	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DJ013_03775	COG0196	riboflavin kinase activity
DJ013_03780	COG4783	chaperone-mediated protein folding
DJ013_03785	COG4269	membrane
DJ013_03790	COG0077	Prephenate dehydratase
DJ013_03790	COG1605	Chorismate mutase
DJ013_03830	COG0438	transferase activity, transferring glycosyl groups
DJ013_03845	COG1012	belongs to the aldehyde dehydrogenase family
DJ013_03850	COG1917	Cupin 2, conserved barrel domain protein
DJ013_03850	COG4977	sequence-specific DNA binding
DJ013_03860	COG3781	membrane
DJ013_03880	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_03900	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DJ013_03905	COG0612	Peptidase, M16
DJ013_03910	COG0243	molybdopterin cofactor binding
DJ013_03915	COG2226	methyltransferase
DJ013_03930	COG0820	rRNA (adenine-C2-)-methyltransferase activity
DJ013_03985	COG0673	inositol 2-dehydrogenase activity
DJ013_04000	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DJ013_04000	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DJ013_04005	COG1959	2 iron, 2 sulfur cluster binding
DJ013_04060	COG2268	Band 7 protein
DJ013_04070	COG4895	conserved protein (DUF2196)
DJ013_04145	COG0322	excinuclease ABC activity
DJ013_04170	COG1595	DNA-templated transcription, initiation
DJ013_04175	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DJ013_04185	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DJ013_04210	COG0300	oxidoreductase activity
DJ013_04215	COG3458	cephalosporin-C deacetylase activity
DJ013_04235	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_04245	COG0492	ferredoxin-NADP+ reductase activity
DJ013_04250	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
DJ013_04260	COG1741	Belongs to the pirin family
DJ013_04280	COG0783	Belongs to the Dps family
DJ013_04295	COG1629	transport
DJ013_04295	COG4206	TonB-dependent receptor
DJ013_04305	COG0697	spore germination
DJ013_04315	COG4181	ATPase activity
DJ013_04335	COG2226	methyltransferase
DJ013_04340	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DJ013_04345	COG0135	phosphoribosylanthranilate isomerase activity
DJ013_04395	COG4221	oxidoreductase activity
DJ013_04400	COG2267	carboxylic ester hydrolase activity
DJ013_04425	COG0513	Belongs to the DEAD box helicase family
DJ013_04455	COG3118	belongs to the thioredoxin family
DJ013_04475	COG4952	isomerase
DJ013_04495	COG2197	response regulator
DJ013_04500	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DJ013_04525	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DJ013_04535	COG0210	DNA helicase
DJ013_04570	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
DJ013_04635	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
DJ013_04680	COG0604	alcohol dehydrogenase
DJ013_04685	COG0133	tryptophan synthase activity
DJ013_04715	COG0508	dehydrogenase complex catalyzes the overall conversion of
DJ013_04720	COG0481	GTPase activity
DJ013_04760	COG0584	glycerophosphoryl diester phosphodiesterase
DJ013_04790	COG5002	protein histidine kinase activity
DJ013_04805	COG1970	mechanosensitive ion channel activity
DJ013_04860	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DJ013_04865	COG0154	amidase activity
DJ013_04880	COG0006	proline dipeptidase activity
DJ013_04885	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DJ013_04885	COG0248	Ppx GppA phosphatase
DJ013_04900	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DJ013_04910	COG1902	pentaerythritol trinitrate reductase activity
DJ013_04915	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_04980	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
DJ013_05000	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_05015	COG2153	protein acetylation
DJ013_05035	COG0124	histidyl-tRNA synthetase
DJ013_05055	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_05060	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_05075	COG1418	mRNA catabolic process
DJ013_05100	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DJ013_05125	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DJ013_05140	COG3119	arylsulfatase activity
DJ013_05155	COG3119	arylsulfatase activity
DJ013_05165	COG1619	proteins homologs of microcin C7 resistance protein MccF
DJ013_05185	COG0429	hydrolase of the alpha beta-hydrolase fold
DJ013_05210	COG0577	efflux transmembrane transporter activity
DJ013_05225	COG4771	TonB-dependent receptor
DJ013_05240	COG1858	cytochrome C peroxidase
DJ013_05260	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
DJ013_05305	COG0508	dehydrogenase complex catalyzes the overall conversion of
DJ013_05305	COG0022	dehydrogenase e1 component
DJ013_05335	COG0671	phosphoesterase, PA-phosphatase related
DJ013_05340	COG0180	Tryptophanyl-tRNA synthetase
DJ013_05360	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DJ013_05375	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DJ013_05380	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
DJ013_05410	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_05420	COG1609	Transcriptional regulator
DJ013_05435	COG2211	Major facilitator Superfamily
DJ013_05445	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DJ013_05465	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_05470	COG2814	Major facilitator Superfamily
DJ013_05485	COG1082	Xylose isomerase domain protein TIM barrel
DJ013_05530	COG3119	arylsulfatase activity
DJ013_05555	COG3119	arylsulfatase activity
DJ013_05565	COG3119	arylsulfatase activity
DJ013_05595	COG0561	phosphatase activity
DJ013_05650	COG1518	maintenance of DNA repeat elements
DJ013_05675	COG1337	RAMP superfamily
DJ013_05765	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
DJ013_05805	COG0587	DNA-directed DNA polymerase activity
DJ013_05810	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DJ013_05820	COG2271	Major facilitator Superfamily
DJ013_05825	COG0800	Aldolase
DJ013_05835	COG1904	glucuronate isomerase
DJ013_05840	COG2721	sulfolactate sulfo-lyase activity
DJ013_05845	COG0246	Mannitol dehydrogenase
DJ013_05850	COG1917	Cupin 2, conserved barrel domain protein
DJ013_05865	COG2032	superoxide dismutase activity
DJ013_05875	COG0584	glycerophosphoryl diester phosphodiesterase
DJ013_05920	COG2223	nitrite transmembrane transporter activity
DJ013_05935	COG0579	oxidoreductase
DJ013_05945	COG2378	regulation of single-species biofilm formation
DJ013_05970	COG2366	antibiotic biosynthetic process
DJ013_05995	COG0215	cysteine-tRNA ligase activity
DJ013_06005	COG2234	aminopeptidase activity
DJ013_06025	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DJ013_06045	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DJ013_06055	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
DJ013_06070	COG1528	Iron-storage protein
DJ013_06110	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
DJ013_06110	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DJ013_06125	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DJ013_06135	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
DJ013_06140	COG1805	sodium ion transport
DJ013_06145	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
DJ013_06150	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
DJ013_06155	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
DJ013_06165	COG1477	protein flavinylation
DJ013_06175	COG0516	GMP reductase activity
DJ013_06175	COG0517	IMP dehydrogenase activity
DJ013_06200	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DJ013_06220	COG0514	ATP-dependent DNA helicase (RecQ)
DJ013_06235	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DJ013_06245	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DJ013_06250	COG1522	sequence-specific DNA binding
DJ013_06255	COG1104	cysteine desulfurase activity
DJ013_06260	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
DJ013_06270	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DJ013_06285	COG0516	GMP reductase activity
DJ013_06285	COG0517	IMP dehydrogenase activity
DJ013_06290	COG2271	Major facilitator Superfamily
DJ013_06305	COG1309	transcriptional regulator
DJ013_06325	COG0463	Glycosyl transferase, family 2
DJ013_06330	COG0861	Integral membrane protein TerC family
DJ013_06335	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
DJ013_06350	COG3290	protein histidine kinase activity
DJ013_06355	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
DJ013_06365	COG2706	6-phosphogluconolactonase activity
DJ013_06375	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DJ013_06435	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DJ013_06440	COG0735	belongs to the Fur family
DJ013_06450	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DJ013_06460	COG0544	peptidyl-prolyl cis-trans isomerase activity
DJ013_06470	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DJ013_06485	COG4974	Belongs to the 'phage' integrase family
DJ013_06495	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DJ013_06500	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DJ013_06515	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DJ013_06530	COG0673	inositol 2-dehydrogenase activity
DJ013_06555	COG1595	DNA-templated transcription, initiation
DJ013_06565	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DJ013_06575	COG2264	protein methyltransferase activity
DJ013_06590	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DJ013_06595	COG0586	Pfam SNARE associated Golgi protein
DJ013_06600	COG1809	phosphosulfolactate synthase activity
DJ013_06615	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
DJ013_06675	COG1007	ATP synthesis coupled electron transport
DJ013_06700	COG0183	Belongs to the thiolase family
DJ013_06705	COG0667	Aldo Keto reductase
DJ013_06715	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DJ013_06745	COG1595	DNA-templated transcription, initiation
DJ013_06800	COG0243	molybdopterin cofactor binding
DJ013_06825	COG3279	Response regulator of the LytR AlgR family
DJ013_06845	COG2197	response regulator
DJ013_06890	COG4585	Histidine kinase
DJ013_06895	COG2197	response regulator
DJ013_06905	COG0205	6-phosphofructokinase activity
DJ013_06925	COG1183	phosphatidylcholine synthase activity
DJ013_06930	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ013_06940	COG5000	phosphorelay sensor kinase activity
DJ013_06965	COG1629	transport
DJ013_06965	COG4206	TonB-dependent receptor
DJ013_06970	COG3123	guanosine phosphorylase activity
DJ013_06975	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DJ013_07000	COG1262	PFAM Formylglycine-generating sulfatase enzyme
DJ013_07005	COG1192	Involved in chromosome partitioning
DJ013_07010	COG0305	Participates in initiation and elongation during chromosome replication
DJ013_07015	COG1475	DNA binding
DJ013_07020	COG1192	Involved in chromosome partitioning
DJ013_07035	COG0784	Response regulator, receiver
DJ013_07040	COG4251	negative regulation of phosphorylation
DJ013_07045	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
DJ013_07050	COG2204	response regulator
DJ013_07055	COG4251	negative regulation of phosphorylation
DJ013_07060	COG3852	Histidine kinase
DJ013_07070	COG1309	transcriptional regulator
DJ013_07085	COG1529	Aldehyde oxidase and xanthine dehydrogenase
DJ013_07110	COG0463	Glycosyl transferase, family 2
DJ013_07130	COG2814	Major facilitator Superfamily
DJ013_07135	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DJ013_07170	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
DJ013_07175	COG0517	IMP dehydrogenase activity
DJ013_07175	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
DJ013_07180	COG0514	ATP-dependent DNA helicase (RecQ)
DJ013_07185	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
DJ013_07190	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DJ013_07195	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DJ013_07205	COG1404	Belongs to the peptidase S8 family
DJ013_07215	COG0470	DNA polymerase III
DJ013_07230	COG0545	Peptidyl-prolyl cis-trans isomerase
DJ013_07245	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DJ013_07280	COG0179	Fumarylacetoacetate (FAA) hydrolase
DJ013_07295	COG0300	oxidoreductase activity
DJ013_07300	COG3119	arylsulfatase activity
DJ013_07305	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
DJ013_07305	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DJ013_07330	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
DJ013_07345	COG2133	pyrroloquinoline quinone binding
DJ013_07370	COG4251	negative regulation of phosphorylation
DJ013_07375	COG0745	RESPONSE REGULATOR receiver
DJ013_07380	COG2885	chlorophyll binding
DJ013_07380	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DJ013_07410	COG0805	protein transport
DJ013_07415	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DJ013_07425	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
DJ013_07430	COG0254	rRNA binding
DJ013_07445	COG1162	GTPase activity
DJ013_07450	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ013_07455	COG3158	transport of potassium into the cell
DJ013_07460	COG1024	Enoyl-CoA hydratase
DJ013_07465	COG2197	response regulator
DJ013_07530	COG0542	response to heat
DJ013_07535	COG2198	Histidine kinase
DJ013_07535	COG2205	protein histidine kinase activity
DJ013_07535	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ013_07535	COG0784	Response regulator, receiver
DJ013_07555	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DJ013_07585	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
DJ013_07595	COG0297	glycogen (starch) synthase activity
DJ013_07600	COG0438	transferase activity, transferring glycosyl groups
DJ013_07605	COG1045	serine acetyltransferase
DJ013_07645	COG3206	protein involved in exopolysaccharide biosynthesis
DJ013_07645	COG0489	protein tyrosine kinase activity
DJ013_07660	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
DJ013_07740	COG2814	Major facilitator Superfamily
DJ013_07745	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
DJ013_07790	COG2972	Histidine kinase
DJ013_07795	COG3279	Response regulator of the LytR AlgR family
DJ013_07800	COG0051	transcription antitermination factor activity, RNA binding
DJ013_07810	COG0525	valine-tRNA ligase activity
DJ013_07815	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DJ013_07820	COG1381	Involved in DNA repair and RecF pathway recombination
DJ013_07825	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DJ013_07830	COG0335	large ribosomal subunit rRNA binding
DJ013_07835	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
DJ013_07840	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DJ013_07850	COG0261	This protein binds to 23S rRNA in the presence of protein L20
DJ013_07850	COG3743	rRNA binding
DJ013_07870	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DJ013_07880	COG0183	Belongs to the thiolase family
DJ013_07885	COG0318	PFAM AMP-dependent synthetase and ligase
DJ013_07890	COG4206	TonB-dependent receptor
DJ013_07895	COG0720	synthase
DJ013_07900	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ013_07910	COG0719	Fe-S assembly protein
DJ013_07920	COG2912	Transglutaminase-like superfamily
DJ013_07925	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DJ013_07935	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
DJ013_07945	COG1652	LysM domain
DJ013_07965	COG0793	Belongs to the peptidase S41A family
DJ013_07970	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DJ013_07975	COG0107	imidazoleglycerol-phosphate synthase activity
DJ013_07985	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
DJ013_07995	COG3279	Response regulator of the LytR AlgR family
DJ013_08000	COG3279	Response regulator of the LytR AlgR family
DJ013_08005	COG3275	phosphorelay sensor kinase activity
DJ013_08010	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DJ013_08015	COG4206	TonB-dependent receptor
DJ013_08025	COG0358	DNA primase activity
DJ013_08045	COG0629	single-stranded DNA binding
DJ013_08050	COG1194	a g-specific adenine glycosylase
DJ013_08065	COG1530	ribonuclease E activity
DJ013_08080	COG0700	Nucleoside recognition
DJ013_08090	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DJ013_08125	COG1629	transport
DJ013_08125	COG4206	TonB-dependent receptor
DJ013_08130	COG0561	phosphatase activity
DJ013_08160	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJ013_08165	COG0508	dehydrogenase complex catalyzes the overall conversion of
DJ013_08180	COG3047	cAMP biosynthetic process
DJ013_08180	COG2885	chlorophyll binding
DJ013_08205	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
DJ013_08215	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DJ013_08230	COG3275	phosphorelay sensor kinase activity
DJ013_08235	COG3279	Response regulator of the LytR AlgR family
DJ013_08270	COG1393	Belongs to the ArsC family
DJ013_08275	COG0018	arginyl-trna synthetase
DJ013_08285	COG1561	YicC-like family, N-terminal region
DJ013_08330	COG3344	reverse transcriptase
DJ013_08365	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ013_08370	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ013_08380	COG2003	Belongs to the UPF0758 family
DJ013_08385	COG0268	Binds directly to 16S ribosomal RNA
DJ013_08395	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DJ013_08410	COG0252	asparaginase activity
DJ013_08420	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
DJ013_08430	COG2130	NADP-dependent
DJ013_08440	COG0084	hydrolase, TatD family'
DJ013_08450	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DJ013_08505	COG5492	domain, Protein
DJ013_08505	COG4932	domain protein
DJ013_08535	COG0259	pyridoxamine-phosphate oxidase activity
DJ013_08540	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DJ013_08550	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DJ013_08555	COG0640	Transcriptional regulator
DJ013_08560	COG0460	homoserine dehydrogenase
DJ013_08560	COG0527	aspartate kinase activity
DJ013_08565	COG0083	homoserine kinase activity
DJ013_08585	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DJ013_08605	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DJ013_08625	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DJ013_08630	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
DJ013_08640	COG0726	polysaccharide deacetylase
DJ013_08650	COG2885	chlorophyll binding
DJ013_08690	COG4412	M6 family metalloprotease domain protein
DJ013_08690	COG3291	Pkd domain containing protein
DJ013_08695	COG1979	alcohol dehydrogenase
DJ013_08725	COG3813	Protein conserved in bacteria
DJ013_08765	COG0640	Transcriptional regulator
DJ013_08775	COG0798	PFAM Bile acid sodium symporter
DJ013_08780	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ013_08795	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DJ013_08825	COG1917	Cupin 2, conserved barrel domain protein
DJ013_08825	COG2207	Transcriptional regulator
DJ013_08870	COG0519	Catalyzes the synthesis of GMP from XMP
DJ013_08890	COG0561	phosphatase activity
DJ013_08895	COG4206	TonB-dependent receptor
DJ013_08895	COG1629	transport
DJ013_08920	COG4625	pathogenesis
DJ013_08965	COG0673	inositol 2-dehydrogenase activity
DJ013_08975	COG0662	Cupin 2, conserved barrel domain protein
DJ013_08975	COG2207	Transcriptional regulator
DJ013_08980	COG0673	inositol 2-dehydrogenase activity
DJ013_08985	COG1166	arginine decarboxylase activity
DJ013_08990	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DJ013_09005	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DJ013_09010	COG0656	L-ascorbic acid biosynthetic process
DJ013_09015	COG4221	oxidoreductase activity
DJ013_09045	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DJ013_09065	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DJ013_09070	COG3250	beta-galactosidase activity
DJ013_09075	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
DJ013_09080	COG1609	Transcriptional regulator
DJ013_09100	COG1629	transport
DJ013_09100	COG4206	TonB-dependent receptor
DJ013_09135	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
DJ013_09145	COG0181	hydroxymethylbilane synthase activity
DJ013_09175	COG2610	gluconate transmembrane transporter activity
DJ013_09190	COG0443	Heat shock 70 kDa protein
DJ013_09255	COG0779	Required for maturation of 30S ribosomal subunits
DJ013_09260	COG0195	Participates in both transcription termination and antitermination
DJ013_09260	COG2251	uridine kinase activity
DJ013_09265	COG5180	pathogenesis
DJ013_09265	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DJ013_09275	COG1388	LysM domain
DJ013_09275	COG1705	Flagellar rod assembly protein muramidase FlgJ
DJ013_09285	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DJ013_09290	COG1522	sequence-specific DNA binding
DJ013_09305	COG3842	ATPase activity
DJ013_09325	COG4974	Belongs to the 'phage' integrase family
DJ013_09330	COG0517	IMP dehydrogenase activity
DJ013_09385	COG0069	glutamate synthase activity
DJ013_09385	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DJ013_09395	COG4206	TonB-dependent receptor
DJ013_09395	COG1629	transport
DJ013_09445	COG1063	alcohol dehydrogenase
DJ013_09450	COG2207	Transcriptional regulator
DJ013_09450	COG0662	Cupin 2, conserved barrel domain protein
DJ013_09455	COG3119	arylsulfatase activity
DJ013_09460	COG3119	arylsulfatase activity
DJ013_09465	COG3119	arylsulfatase activity
DJ013_09470	COG2010	Cytochrome c
DJ013_09490	COG1629	transport
DJ013_09490	COG4206	TonB-dependent receptor
DJ013_09510	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_09520	COG2271	Major facilitator Superfamily
DJ013_09535	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
DJ013_09540	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DJ013_09545	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
DJ013_09555	COG0110	maltose O-acetyltransferase activity
DJ013_09560	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DJ013_09565	COG0519	Catalyzes the synthesis of GMP from XMP
DJ013_09565	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DJ013_09570	COG3876	Protein conserved in bacteria
DJ013_09575	COG4591	ABC-type transport system involved in lipoprotein release permease component
DJ013_09595	COG0482	sulfurtransferase activity
DJ013_09630	COG1187	pseudouridine synthase activity
DJ013_09635	COG0101	tRNA pseudouridine synthase activity
DJ013_09645	COG0009	L-threonylcarbamoyladenylate synthase
DJ013_09660	COG0542	response to heat
DJ013_09685	COG1136	(ABC) transporter
DJ013_09690	COG0045	succinate-CoA ligase (ADP-forming) activity
DJ013_09700	COG1196	nuclear chromosome segregation
DJ013_09700	COG3264	Mechanosensitive ion channel
DJ013_09710	COG0179	Fumarylacetoacetate (FAA) hydrolase
DJ013_09720	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DJ013_09725	COG3959	Transketolase, thiamine diphosphate binding domain
DJ013_09730	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DJ013_09770	COG4993	Dehydrogenase
DJ013_09790	COG0673	inositol 2-dehydrogenase activity
DJ013_09795	COG0673	inositol 2-dehydrogenase activity
DJ013_09815	COG1122	ATPase activity
DJ013_09820	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ013_09825	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DJ013_09825	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
DJ013_09830	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ013_09835	COG1078	dGTPase activity
DJ013_09850	COG0069	glutamate synthase activity
DJ013_09855	COG1012	belongs to the aldehyde dehydrogenase family
DJ013_09860	COG0281	malic enzyme
DJ013_09865	COG0028	Belongs to the TPP enzyme family
DJ013_09875	COG0492	ferredoxin-NADP+ reductase activity
DJ013_09935	COG1595	DNA-templated transcription, initiation
DJ013_09995	COG0732	type I restriction modification DNA specificity domain
DJ013_10005	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
DJ013_10020	COG2217	Heavy metal translocating P-type atpase
DJ013_10025	COG2217	Heavy metal translocating P-type atpase
DJ013_10095	COG0668	transmembrane transport
DJ013_10105	COG1595	DNA-templated transcription, initiation
DJ013_10110	COG4206	TonB-dependent receptor
DJ013_10110	COG1629	transport
DJ013_10140	COG3250	beta-galactosidase activity
DJ013_10145	COG1609	Transcriptional regulator
DJ013_10145	COG2207	Transcriptional regulator
DJ013_10150	COG0738	Major facilitator superfamily
DJ013_10165	COG0028	Belongs to the TPP enzyme family
DJ013_10170	COG1966	Carbon starvation protein
DJ013_10190	COG4206	TonB-dependent receptor
DJ013_10190	COG1629	transport
DJ013_10215	COG1940	carbohydrate kinase activity
DJ013_10225	COG3119	arylsulfatase activity
DJ013_10245	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DJ013_10270	COG0564	pseudouridine synthase activity
DJ013_10330	COG4206	TonB-dependent receptor
DJ013_10330	COG1629	transport
DJ013_10335	COG0745	RESPONSE REGULATOR receiver
DJ013_10340	COG3119	arylsulfatase activity
DJ013_10365	COG2076	Multidrug Resistance protein
DJ013_10380	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_10395	COG0037	tRNA processing
DJ013_10420	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DJ013_10425	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DJ013_10450	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DJ013_10530	COG3119	arylsulfatase activity
DJ013_10535	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
DJ013_10540	COG1063	alcohol dehydrogenase
DJ013_10545	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_10555	COG1902	pentaerythritol trinitrate reductase activity
DJ013_10555	COG0446	pyridine nucleotide-disulphide oxidoreductase
DJ013_10565	COG0300	oxidoreductase activity
DJ013_10575	COG1473	amidohydrolase
DJ013_10580	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
DJ013_10585	COG3118	belongs to the thioredoxin family
DJ013_10600	COG1262	PFAM Formylglycine-generating sulfatase enzyme
DJ013_10605	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DJ013_10615	COG0070	glutamate synthase
DJ013_10615	COG0067	glutamate synthase
DJ013_10615	COG0069	glutamate synthase activity
DJ013_10630	COG0175	sulfate reduction
DJ013_10640	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DJ013_10640	COG1648	precorrin-2 dehydrogenase activity
DJ013_10645	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DJ013_10650	COG1234	tRNA 3'-trailer cleavage
DJ013_10660	COG0463	Glycosyl transferase, family 2
DJ013_10665	COG0438	transferase activity, transferring glycosyl groups
DJ013_10680	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
DJ013_10690	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
DJ013_10695	COG0116	Belongs to the methyltransferase superfamily
DJ013_10695	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DJ013_10700	COG0505	Belongs to the CarA family
DJ013_10705	COG0203	ribosomal protein L17
DJ013_10710	COG0202	RNA polymerase activity
DJ013_10715	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DJ013_10720	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DJ013_10725	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DJ013_10730	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DJ013_10735	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DJ013_10740	COG0024	Methionine aminopeptidase
DJ013_10745	COG0201	protein transport
DJ013_10750	COG0200	Binds to the 23S rRNA
DJ013_10755	COG1841	ribosomal large subunit assembly
DJ013_10760	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DJ013_10765	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
DJ013_10770	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DJ013_10775	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DJ013_10780	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DJ013_10785	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
DJ013_10790	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
DJ013_10795	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DJ013_10800	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DJ013_10805	COG0255	Belongs to the universal ribosomal protein uL29 family
DJ013_10810	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DJ013_10815	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DJ013_10820	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
DJ013_10825	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DJ013_10830	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DJ013_10835	COG0089	rRNA binding
DJ013_10840	COG0088	Forms part of the polypeptide exit tunnel
DJ013_10845	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DJ013_10855	COG1595	DNA-templated transcription, initiation
DJ013_10865	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ013_10870	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ013_10875	COG0714	Associated with various cellular activities
DJ013_10880	COG1796	DNA polymerase
DJ013_10880	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
DJ013_10890	COG0534	Mate efflux family protein
DJ013_10900	COG0514	ATP-dependent DNA helicase (RecQ)
DJ013_10915	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
DJ013_10920	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DJ013_10920	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DJ013_10930	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
DJ013_10935	COG2031	fatty acid transporter
DJ013_10940	COG0488	(ABC) transporter
DJ013_10945	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
DJ013_10970	COG1011	Hydrolase
DJ013_10975	COG0825	malonyl-CoA metabolic process
DJ013_10980	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
DJ013_10990	COG1012	belongs to the aldehyde dehydrogenase family
DJ013_11005	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DJ013_11015	COG0148	phosphopyruvate hydratase activity
DJ013_11020	COG3118	belongs to the thioredoxin family
DJ013_11025	COG0632	four-way junction helicase activity
DJ013_11035	COG0509	glycine decarboxylation via glycine cleavage system
DJ013_11040	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DJ013_11065	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DJ013_11070	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
DJ013_11100	COG0488	(ABC) transporter
DJ013_11115	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DJ013_11140	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DJ013_11145	COG0459	protein refolding
DJ013_11155	COG0504	CTP synthase activity
DJ013_11170	COG0668	transmembrane transport
DJ013_11185	COG3275	phosphorelay sensor kinase activity
DJ013_11190	COG3279	Response regulator of the LytR AlgR family
DJ013_11195	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DJ013_11205	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DJ013_11220	COG1629	transport
DJ013_11220	COG4206	TonB-dependent receptor
DJ013_11225	COG0288	reversible hydration of carbon dioxide
DJ013_11250	COG0758	DNA mediated transformation
DJ013_11250	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DJ013_11260	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DJ013_11270	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
DJ013_11280	COG1914	H( )-stimulated, divalent metal cation uptake system
DJ013_11330	COG0726	polysaccharide deacetylase
DJ013_11360	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DJ013_11390	COG3153	acetyltransferase
DJ013_11390	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJ013_11445	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DJ013_11500	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
DJ013_11505	COG0402	S-adenosylhomocysteine deaminase activity
DJ013_11535	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DJ013_11540	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DJ013_11545	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DJ013_11630	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
DJ013_11675	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DJ013_11685	COG0438	transferase activity, transferring glycosyl groups
DJ013_11690	COG1252	NADH dehydrogenase
DJ013_11695	COG1132	(ABC) transporter
DJ013_11700	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ013_11710	COG2755	lipolytic protein G-D-S-L family
DJ013_11710	COG0657	acetylesterase activity
DJ013_11725	COG3239	Fatty acid desaturase
DJ013_11730	COG0513	Belongs to the DEAD box helicase family
DJ013_11740	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DJ013_11750	COG2346	COG2346, Truncated hemoglobins
DJ013_11790	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_11865	COG2217	Heavy metal translocating P-type atpase
DJ013_11950	COG4804	nuclease activity
DJ013_11955	COG4430	Bacteriocin-protection, YdeI or OmpD-Associated
DJ013_11960	COG0443	Heat shock 70 kDa protein
DJ013_11965	COG5520	Belongs to the glycosyl hydrolase 30 family
DJ013_11975	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ013_11985	COG1629	transport
DJ013_11985	COG4206	TonB-dependent receptor
DJ013_11990	COG0745	RESPONSE REGULATOR receiver
DJ013_11990	COG2205	protein histidine kinase activity
DJ013_11990	COG4191	Histidine kinase
DJ013_12010	COG0564	pseudouridine synthase activity
DJ013_12015	COG2515	1-aminocyclopropane-1-carboxylate deaminase
DJ013_12025	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
DJ013_12050	COG2095	MarC family integral membrane protein
DJ013_12075	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
DJ013_12085	COG0706	membrane insertase activity
DJ013_12095	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
DJ013_12100	COG1132	(ABC) transporter
DJ013_12160	COG0513	Belongs to the DEAD box helicase family
DJ013_12200	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
DJ013_12220	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
DJ013_12230	COG2814	Major facilitator Superfamily
DJ013_12245	COG2197	response regulator
DJ013_12265	COG0156	8-amino-7-oxononanoate synthase activity
DJ013_12280	COG1597	lipid kinase activity
DJ013_12290	COG3104	oligopeptide transport
DJ013_12325	COG0456	acetyltransferase
DJ013_12335	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
DJ013_12355	COG1668	transmembrane transport
DJ013_12360	COG4152	abc transporter atp-binding protein
DJ013_12380	COG3530	Putative quorum-sensing-regulated virulence factor
DJ013_12395	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
DJ013_12410	COG0017	Asparaginyl-tRNA synthetase
DJ013_12415	COG0584	glycerophosphoryl diester phosphodiesterase
DJ013_12425	COG0628	permease
DJ013_12435	COG0745	RESPONSE REGULATOR receiver
DJ013_12440	COG5002	protein histidine kinase activity
DJ013_12445	COG0564	pseudouridine synthase activity
DJ013_12460	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DJ013_12475	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DJ013_12480	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DJ013_12510	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
DJ013_12530	COG3525	Glycosyl hydrolase, family 20, catalytic domain
DJ013_12535	COG2378	regulation of single-species biofilm formation
DJ013_12550	COG2249	NAD(P)H dehydrogenase (quinone) activity
DJ013_12560	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DJ013_12560	COG0047	phosphoribosylformylglycinamidine synthase activity
DJ013_12605	COG0702	epimerase
DJ013_12615	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DJ013_12630	COG1649	PFAM Uncharacterised BCR, COG1649
DJ013_12640	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DJ013_12650	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DJ013_12665	COG0799	negative regulation of ribosome biogenesis
DJ013_12670	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DJ013_12685	COG2050	protein possibly involved in aromatic compounds catabolism
DJ013_12695	COG3275	phosphorelay sensor kinase activity
DJ013_12700	COG3279	Response regulator of the LytR AlgR family
DJ013_12710	COG0811	peptide transport
DJ013_12720	COG0131	Imidazoleglycerol-phosphate dehydratase
DJ013_12720	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
DJ013_12740	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DJ013_12745	COG1253	flavin adenine dinucleotide binding
DJ013_12755	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
DJ013_12760	COG1940	carbohydrate kinase activity
DJ013_12770	COG2860	membrane
DJ013_12775	COG0346	lactoylglutathione lyase activity
DJ013_12780	COG1524	type I phosphodiesterase nucleotide pyrophosphatase
DJ013_12795	COG2223	nitrite transmembrane transporter activity
DJ013_12800	COG0346	lactoylglutathione lyase activity
DJ013_12805	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ013_12810	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DJ013_12845	COG0657	acetylesterase activity
DJ013_12845	COG2755	lipolytic protein G-D-S-L family
DJ013_12870	COG0330	HflC and HflK could
DJ013_12875	COG1187	pseudouridine synthase activity
DJ013_12935	COG0415	Belongs to the DNA photolyase family
DJ013_12945	COG1629	transport
DJ013_12945	COG4206	TonB-dependent receptor
DJ013_12960	COG1472	Belongs to the glycosyl hydrolase 3 family
DJ013_13035	COG1262	PFAM Formylglycine-generating sulfatase enzyme
DJ013_13080	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
DJ013_13085	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DJ013_13090	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DJ013_13110	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DJ013_13125	COG4771	TonB-dependent receptor
DJ013_13130	COG2885	chlorophyll binding
DJ013_13135	COG0346	lactoylglutathione lyase activity
DJ013_13140	COG0569	domain protein
DJ013_13145	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DJ013_13150	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ013_13160	COG3938	Belongs to the proline racemase family
DJ013_13175	COG0604	alcohol dehydrogenase
DJ013_13180	COG1193	negative regulation of DNA recombination
DJ013_13210	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
DJ013_13240	COG0126	phosphoglycerate kinase activity
DJ013_13245	COG0360	Binds together with S18 to 16S ribosomal RNA
DJ013_13250	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DJ013_13255	COG0359	binds to the 23S rRNA
DJ013_13270	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DJ013_13275	COG0516	GMP reductase activity
DJ013_13335	COG5002	protein histidine kinase activity
DJ013_13335	COG2198	Histidine kinase
DJ013_13335	COG0784	Response regulator, receiver
DJ013_13410	COG1214	PFAM Peptidase M22, glycoprotease
DJ013_13415	COG0793	Belongs to the peptidase S41A family
DJ013_13420	COG0594	ribonuclease P activity
DJ013_13425	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DJ013_13435	COG0297	glycogen (starch) synthase activity
DJ013_13445	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DJ013_13450	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
DJ013_13475	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DJ013_13485	COG0084	hydrolase, TatD family'
DJ013_13490	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DJ013_13505	COG1611	Belongs to the LOG family
DJ013_13520	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DJ013_13525	COG4591	ABC-type transport system involved in lipoprotein release permease component
DJ013_13560	COG2897	thiosulfate sulfurtransferase activity
DJ013_13565	COG0423	glycine-tRNA ligase activity
DJ013_13590	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DJ013_13610	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DJ013_13615	COG2223	nitrite transmembrane transporter activity
DJ013_13685	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DJ013_13700	COG0726	polysaccharide deacetylase
DJ013_13710	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ013_13715	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DJ013_13725	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ013_13730	COG0824	Thioesterase
DJ013_13745	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DJ013_13750	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ013_13760	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_13790	COG0612	Peptidase, M16
DJ013_13820	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DJ013_13825	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DJ013_13835	COG1090	epimerase
DJ013_13840	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
DJ013_13865	COG1610	YqeY-like protein
DJ013_13870	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DJ013_13875	COG2066	Belongs to the glutaminase family
DJ013_13885	COG1785	Belongs to the alkaline phosphatase family
DJ013_13890	COG1785	Belongs to the alkaline phosphatase family
DJ013_13950	COG0439	Biotin carboxylase
DJ013_13960	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DJ013_13965	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DJ013_13970	COG0416	fatty acid biosynthetic process
DJ013_13975	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DJ013_13985	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
DJ013_13990	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
DJ013_13995	COG0194	GDP metabolic process
DJ013_14005	COG1595	DNA-templated transcription, initiation
DJ013_14015	COG1187	pseudouridine synthase activity
DJ013_14020	COG2270	Major facilitator Superfamily
DJ013_14030	COG4303	Ethanolamine ammonia lyase large subunit
DJ013_14035	COG4302	ethanolamine ammonia-lyase activity
DJ013_14040	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DJ013_14050	COG0640	Transcriptional regulator
DJ013_14080	COG0165	Argininosuccinate lyase
DJ013_14100	COG0860	N-Acetylmuramoyl-L-alanine amidase
DJ013_14130	COG2996	Protein conserved in bacteria
DJ013_14135	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
DJ013_14140	COG1629	transport
DJ013_14140	COG4206	TonB-dependent receptor
DJ013_14155	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DJ013_14165	COG1522	sequence-specific DNA binding
DJ013_14180	COG3525	Glycosyl hydrolase, family 20, catalytic domain
DJ013_14185	COG3119	arylsulfatase activity
DJ013_14190	COG0405	Gamma-glutamyltransferase
DJ013_14200	COG0577	efflux transmembrane transporter activity
DJ013_14200	COG1136	(ABC) transporter
DJ013_14215	COG0233	cytoplasmic translational termination
DJ013_14220	COG0528	UMP kinase activity
DJ013_14235	COG1629	transport
DJ013_14235	COG4206	TonB-dependent receptor
DJ013_14245	COG4206	TonB-dependent receptor
DJ013_14245	COG1629	transport
DJ013_14270	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DJ013_14325	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
DJ013_14345	COG3119	arylsulfatase activity
DJ013_14350	COG3119	arylsulfatase activity
DJ013_14355	COG3083	sulfuric ester hydrolase activity
DJ013_14365	COG3386	PFAM SMP-30 Gluconolaconase
DJ013_14370	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJ013_14395	COG0300	oxidoreductase activity
DJ013_14440	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_14445	COG2271	Major facilitator Superfamily
DJ013_14455	COG3734	2-keto-3-deoxy-galactonokinase
DJ013_14460	COG4993	Dehydrogenase
DJ013_14470	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_14475	COG1609	Transcriptional regulator
DJ013_14480	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_14490	COG4206	TonB-dependent receptor
DJ013_14490	COG1629	transport
DJ013_14505	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
DJ013_14510	COG3118	belongs to the thioredoxin family
DJ013_14570	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DJ013_14575	COG0081	regulation of translation
DJ013_14580	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DJ013_14585	COG0222	ribosome binding
DJ013_14590	COG0085	RNA polymerase activity
DJ013_14595	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DJ013_14600	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DJ013_14630	COG0668	transmembrane transport
DJ013_14635	COG0668	transmembrane transport
DJ013_14640	COG1621	beta-fructofuranosidase activity
DJ013_14650	COG3458	cephalosporin-C deacetylase activity
DJ013_14660	COG1472	Belongs to the glycosyl hydrolase 3 family
DJ013_14670	COG1247	-acetyltransferase
DJ013_14680	COG4977	sequence-specific DNA binding
DJ013_14690	COG0842	Transport permease protein
DJ013_14695	COG1131	(ABC) transporter
DJ013_14700	COG1131	(ABC) transporter
DJ013_14705	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ013_14740	COG3119	arylsulfatase activity
DJ013_14755	COG4206	TonB-dependent receptor
DJ013_14755	COG1629	transport
DJ013_14770	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DJ013_14785	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJ013_14790	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DJ013_14810	COG1215	transferase activity, transferring glycosyl groups
DJ013_14820	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DJ013_14820	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DJ013_14835	COG0318	PFAM AMP-dependent synthetase and ligase
DJ013_14840	COG0187	DNA topoisomerase II activity
DJ013_14895	COG0616	signal peptide processing
DJ013_14915	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DJ013_14925	COG0318	PFAM AMP-dependent synthetase and ligase
DJ013_14940	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
DJ013_14965	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DJ013_14975	COG1160	GTP binding
DJ013_14990	COG3119	arylsulfatase activity
DJ013_15000	COG3119	arylsulfatase activity
DJ013_15010	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ013_15060	COG3279	Response regulator of the LytR AlgR family
DJ013_15065	COG3275	phosphorelay sensor kinase activity
DJ013_15100	COG2226	methyltransferase
DJ013_15135	COG1132	(ABC) transporter
DJ013_15170	COG2885	chlorophyll binding
DJ013_15190	COG3275	phosphorelay sensor kinase activity
DJ013_15205	COG0653	protein targeting
DJ013_15215	COG4206	TonB-dependent receptor
DJ013_15215	COG1629	transport
DJ013_15225	COG1408	metallophosphoesterase
DJ013_15235	COG0501	Belongs to the peptidase M48B family
DJ013_15240	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DJ013_15245	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DJ013_15245	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DJ013_15260	COG1674	ftsk spoiiie
DJ013_15270	COG2877	3-deoxy-8-phosphooctulonate synthase activity
DJ013_15275	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DJ013_15280	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ013_15285	COG0571	ribonuclease III activity
DJ013_15290	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DJ013_15290	COG1648	precorrin-2 dehydrogenase activity
DJ013_15295	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ013_15300	COG3386	PFAM SMP-30 Gluconolaconase
DJ013_15310	COG0612	Peptidase, M16
DJ013_15325	COG1007	ATP synthesis coupled electron transport
DJ013_15330	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ013_15340	COG0713	ATP synthesis coupled electron transport
DJ013_15365	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DJ013_15390	COG0167	dihydroorotate dehydrogenase activity
DJ013_15395	COG2226	methyltransferase
DJ013_15430	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DJ013_15450	COG1446	asparaginase
DJ013_15470	COG1250	3-hydroxyacyl-CoA dehydrogenase
DJ013_15470	COG1024	Enoyl-CoA hydratase
DJ013_15475	COG0183	Belongs to the thiolase family
DJ013_15490	COG1053	succinate dehydrogenase
DJ013_15495	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DJ013_15500	COG0488	(ABC) transporter
DJ013_15505	COG2197	response regulator
DJ013_15510	COG1136	(ABC) transporter
DJ013_15510	COG0577	efflux transmembrane transporter activity
DJ013_15525	COG3022	response to hydroperoxide
DJ013_15540	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DJ013_15550	COG3177	Filamentation induced by cAMP protein fic
DJ013_15575	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DJ013_15595	COG0484	heat shock protein binding
DJ013_15620	COG0149	triose-phosphate isomerase activity
DJ013_15635	COG0217	transcriptional regulatory protein
DJ013_15645	COG3279	Response regulator of the LytR AlgR family
DJ013_15650	COG2972	Histidine kinase
DJ013_15650	COG0745	RESPONSE REGULATOR receiver
DJ013_15655	COG4566	intracellular signal transduction
DJ013_15670	COG2027	D-alanyl-D-alanine carboxypeptidase
DJ013_15685	COG0768	penicillin binding
DJ013_15695	COG0275	rRNA processing
DJ013_15705	COG2814	Major facilitator Superfamily
DJ013_15715	COG2160	L-arabinose isomerase activity
DJ013_15720	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DJ013_15725	COG1104	cysteine desulfurase activity
DJ013_15730	COG2197	response regulator
DJ013_15745	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DJ013_15750	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DJ013_15750	COG1648	precorrin-2 dehydrogenase activity
DJ013_15755	COG0243	molybdopterin cofactor binding
DJ013_15770	COG2223	nitrite transmembrane transporter activity
DJ013_15825	COG0688	phosphatidylethanolamine metabolic process
DJ013_15835	COG1136	(ABC) transporter
DJ013_15835	COG0577	efflux transmembrane transporter activity
DJ013_15845	COG0598	Magnesium transport protein CorA
DJ013_15850	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DJ013_15855	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DJ013_15865	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DJ013_15875	COG0512	Glutamine amidotransferase of anthranilate synthase
DJ013_15875	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DJ013_15905	COG0590	tRNA wobble adenosine to inosine editing
DJ013_15930	COG0673	inositol 2-dehydrogenase activity
DJ013_15975	COG1595	DNA-templated transcription, initiation
DJ013_15990	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DJ013_15995	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
DJ013_16020	COG4206	TonB-dependent receptor
DJ013_16020	COG1629	transport
DJ013_16025	COG1609	Transcriptional regulator
DJ013_16030	COG3734	2-keto-3-deoxy-galactonokinase
DJ013_16035	COG0800	Aldolase
DJ013_16045	COG0531	amino acid
DJ013_16080	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DJ013_16095	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DJ013_16135	COG2814	Major facilitator Superfamily
DJ013_16150	COG2824	Alkylphosphonate utilization operon protein PhnA
DJ013_16155	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DJ013_16190	COG0784	Response regulator, receiver
DJ013_16210	COG1957	nucleoside hydrolase
DJ013_16225	COG0577	efflux transmembrane transporter activity
DJ013_16230	COG0247	lactate metabolic process
DJ013_16235	COG1139	Iron-sulfur cluster binding protein
DJ013_16240	COG1556	Lactate utilization protein
DJ013_16245	COG1069	ribulokinase activity
DJ013_16255	COG0730	response to heat
DJ013_16270	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_16285	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DJ013_16300	COG1960	acyl-CoA dehydrogenase activity
DJ013_16305	COG1131	(ABC) transporter
DJ013_16325	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DJ013_16345	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DJ013_16365	COG1629	transport
DJ013_16365	COG4206	TonB-dependent receptor
DJ013_16385	COG0463	Glycosyl transferase, family 2
DJ013_16410	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
DJ013_16415	COG0659	secondary active sulfate transmembrane transporter activity
DJ013_16430	COG0189	ligase activity
DJ013_16440	COG0673	inositol 2-dehydrogenase activity
DJ013_16450	COG3956	TIGRFAM MazG family protein
DJ013_16460	COG0604	alcohol dehydrogenase
DJ013_16465	COG2045	Belongs to the ComB family
DJ013_16475	COG0463	Glycosyl transferase, family 2
DJ013_16500	COG0438	transferase activity, transferring glycosyl groups
DJ013_16530	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJ013_16540	COG0513	Belongs to the DEAD box helicase family
DJ013_16555	COG1349	DNA-binding transcription factor activity
DJ013_16580	COG1032	radical SAM domain protein
DJ013_16595	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
DJ013_16600	COG0564	pseudouridine synthase activity
DJ013_16605	COG0363	glucosamine-6-phosphate deaminase activity
DJ013_16625	COG1278	Cold shock
DJ013_16630	COG0592	DNA-directed DNA polymerase activity
DJ013_16650	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DJ013_16655	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DJ013_16675	COG0746	molybdenum cofactor guanylyltransferase activity
DJ013_16680	COG0314	molybdopterin synthase activity
DJ013_16690	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
DJ013_16695	COG0303	'Molybdopterin
DJ013_16700	COG1678	Uncharacterized ACR, COG1678
DJ013_16705	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DJ013_16710	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DJ013_16720	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
DJ013_16725	COG0527	aspartate kinase activity
DJ013_16735	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DJ013_16740	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DJ013_16750	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DJ013_16755	COG0697	spore germination
DJ013_16815	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
DJ013_16830	COG2326	polyphosphate kinase activity
DJ013_16835	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DJ013_16840	COG1262	PFAM Formylglycine-generating sulfatase enzyme
DJ013_16845	COG1040	competence protein
DJ013_16855	COG0708	Exodeoxyribonuclease III
DJ013_16865	COG0445	tRNA wobble uridine modification
DJ013_16885	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
DJ013_16890	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
DJ013_16900	COG0473	3-isopropylmalate dehydrogenase activity
DJ013_16905	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DJ013_16910	COG0066	3-isopropylmalate dehydratase activity
DJ013_16915	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DJ013_16930	COG0861	Integral membrane protein TerC family
DJ013_16970	COG0398	Pfam SNARE associated Golgi protein
DJ013_16975	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ013_16985	COG0557	exoribonuclease II activity
DJ013_16990	COG1017	nitric oxide dioxygenase activity
DJ013_16990	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ013_17005	COG1940	carbohydrate kinase activity
DJ013_17010	COG0218	Necessary for normal cell division and for the maintenance of normal septation
DJ013_17020	COG1132	(ABC) transporter
DJ013_17035	COG1309	transcriptional regulator
DJ013_17065	COG1073	alpha beta
DJ013_17070	COG2267	carboxylic ester hydrolase activity
DJ013_17075	COG1119	ATPase activity
DJ013_17080	COG0404	The glycine cleavage system catalyzes the degradation of glycine
DJ013_17085	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_17090	COG1960	acyl-CoA dehydrogenase activity
DJ013_17125	COG3119	arylsulfatase activity
DJ013_17130	COG5434	Belongs to the glycosyl hydrolase 28 family
DJ013_17140	COG0246	Mannitol dehydrogenase
DJ013_17170	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DJ013_17180	COG0071	Belongs to the small heat shock protein (HSP20) family
DJ013_17185	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJ013_17190	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DJ013_17195	COG0052	Belongs to the universal ribosomal protein uS2 family
DJ013_17200	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DJ013_17205	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DJ013_17210	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DJ013_17215	COG0792	nuclease activity
DJ013_17220	COG0321	lipoyl(octanoyl) transferase activity
DJ013_17225	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_17235	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DJ013_17240	COG0105	UTP biosynthetic process
DJ013_17245	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
DJ013_17250	COG0545	Peptidyl-prolyl cis-trans isomerase
DJ013_17255	COG0545	Peptidyl-prolyl cis-trans isomerase
DJ013_17270	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
DJ013_17275	COG0355	proton-transporting ATP synthase activity, rotational mechanism
DJ013_17290	COG0242	peptide deformylase activity
DJ013_17305	COG2255	four-way junction helicase activity
DJ013_17315	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
DJ013_17325	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
DJ013_17330	COG2304	oxidoreductase activity
DJ013_17335	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
DJ013_17345	COG0489	protein tyrosine kinase activity
DJ013_17345	COG3206	protein involved in exopolysaccharide biosynthesis
DJ013_17410	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ013_17415	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DJ013_17450	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
DJ013_17460	COG0531	amino acid
DJ013_17465	COG1115	amino acid carrier protein
DJ013_17490	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DJ013_17500	COG0463	Glycosyl transferase, family 2
DJ013_17515	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DJ013_17520	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
DJ013_17525	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DJ013_17530	COG2272	Belongs to the type-B carboxylesterase lipase family
DJ013_17535	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
DJ013_17545	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
DJ013_17565	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DJ013_17565	COG0140	phosphoribosyl-ATP diphosphatase activity
DJ013_17570	COG1950	PFAM Membrane protein of
DJ013_17590	COG0463	Glycosyl transferase, family 2
DJ013_17620	COG0179	Fumarylacetoacetate (FAA) hydrolase
DJ013_17625	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_17635	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
DJ013_17655	COG0028	Belongs to the TPP enzyme family
DJ013_17665	COG0440	acetolactate synthase activity
DJ013_17675	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
DJ013_17680	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DJ013_17690	COG0492	ferredoxin-NADP+ reductase activity
DJ013_17695	COG0750	zinc metalloprotease
DJ013_17715	COG0793	Belongs to the peptidase S41A family
DJ013_17720	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
DJ013_17735	COG4221	oxidoreductase activity
DJ013_17740	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DJ013_17745	COG1127	ABC transporter
DJ013_17750	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
DJ013_17755	COG0138	bifunctional purine biosynthesis protein purh
DJ013_17760	COG1446	asparaginase
DJ013_17765	COG0513	Belongs to the DEAD box helicase family
DJ013_17780	COG1196	nuclear chromosome segregation
DJ013_17780	COG3264	Mechanosensitive ion channel
DJ013_17785	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_17790	COG1312	Catalyzes the dehydration of D-mannonate
DJ013_17795	COG1609	Transcriptional regulator
DJ013_17810	COG2096	Adenosyltransferase
DJ013_17815	COG2333	competence protein COMEC
DJ013_17815	COG0658	competence protein
DJ013_17820	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
DJ013_17850	COG0788	formyltetrahydrofolate deformylase activity
DJ013_17860	COG0738	Major facilitator superfamily
DJ013_17865	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DJ013_17870	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DJ013_17875	COG2115	Belongs to the xylose isomerase family
DJ013_17885	COG2192	nodulation
DJ013_17890	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DJ013_17895	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DJ013_17900	COG1289	transmembrane transporter activity
DJ013_17905	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DJ013_17940	COG1629	transport
DJ013_17940	COG4206	TonB-dependent receptor
DJ013_17960	COG1609	Transcriptional regulator
DJ013_17965	COG0277	FAD linked oxidase domain protein
DJ013_17965	COG0247	lactate metabolic process
DJ013_17985	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
DJ013_17990	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DJ013_17995	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DJ013_18005	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
DJ013_18015	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ013_18040	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
DJ013_18045	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
DJ013_18045	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ013_18050	COG2181	nitrate reductase activity
DJ013_18050	COG0247	lactate metabolic process
DJ013_18065	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
DJ013_18070	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
DJ013_18075	COG1091	dTDP-4-dehydrorhamnose reductase activity
DJ013_18110	COG0612	Peptidase, M16
DJ013_18145	COG3254	rhamnose metabolic process
DJ013_18165	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
DJ013_18170	COG1012	belongs to the aldehyde dehydrogenase family
DJ013_18175	COG0123	including yeast histone deacetylase and acetoin utilization protein
DJ013_18205	COG0463	Glycosyl transferase, family 2
DJ013_18205	COG1216	Glycosyl transferase, family 2
DJ013_18215	COG1216	Glycosyl transferase, family 2
DJ013_18230	COG1136	(ABC) transporter
DJ013_18230	COG0577	efflux transmembrane transporter activity
DJ013_18235	COG1136	(ABC) transporter
DJ013_18235	COG0577	efflux transmembrane transporter activity
DJ013_18240	COG0577	efflux transmembrane transporter activity
DJ013_18245	COG1136	(ABC) transporter
DJ013_18245	COG0577	efflux transmembrane transporter activity
DJ013_18255	COG0577	efflux transmembrane transporter activity
DJ013_18255	COG1136	(ABC) transporter
DJ013_18290	COG0577	efflux transmembrane transporter activity
DJ013_18290	COG1136	(ABC) transporter
DJ013_18305	COG2204	response regulator
DJ013_18310	COG4191	Histidine kinase
DJ013_18315	COG1272	protein, Hemolysin III
DJ013_18330	COG4771	TonB-dependent receptor
DJ013_18370	COG2308	Evidence 4 Homologs of previously reported genes of
DJ013_18380	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
DJ013_18430	COG1858	cytochrome C peroxidase
DJ013_18475	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
DJ013_18495	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DJ013_18505	COG1262	PFAM Formylglycine-generating sulfatase enzyme
DJ013_18510	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
DJ013_18515	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DJ013_18520	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
DJ013_18530	COG0539	negative regulation of cytoplasmic translation
DJ013_18545	COG0437	4 iron, 4 sulfur cluster binding
DJ013_18570	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DJ013_18575	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DJ013_18585	COG0109	protoheme IX farnesyltransferase activity
DJ013_18590	COG1845	cytochrome c oxidase, subunit III
DJ013_18620	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DJ013_18640	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DJ013_18645	COG0772	Belongs to the SEDS family
DJ013_18650	COG1970	mechanosensitive ion channel activity
DJ013_18660	COG0668	transmembrane transport
DJ013_18670	COG1595	DNA-templated transcription, initiation
DJ013_18680	COG1960	acyl-CoA dehydrogenase activity
DJ013_18685	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ013_18690	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ013_18700	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DJ013_18710	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DJ013_18755	COG0649	NAD binding
DJ013_18760	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DJ013_18775	COG0667	Aldo Keto reductase
DJ013_18800	COG1024	Enoyl-CoA hydratase
DJ013_18805	COG1024	Enoyl-CoA hydratase
DJ013_18820	COG0022	dehydrogenase e1 component
DJ013_18835	COG0606	chelatase, subunit chli
DJ013_18845	COG1331	Highly conserved protein containing a thioredoxin domain
DJ013_18870	COG0456	acetyltransferase
DJ013_18890	COG1575	Belongs to the MenA family. Type 1 subfamily
DJ013_18895	COG0386	Belongs to the glutathione peroxidase family
DJ013_18900	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
DJ013_18905	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DJ013_18910	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DJ013_18930	COG1929	Belongs to the glycerate kinase type-1 family
DJ013_18955	COG1774	PSP1 C-terminal conserved region
DJ013_18975	COG0024	Methionine aminopeptidase
DJ013_18980	COG1393	Belongs to the ArsC family
DJ013_18985	COG3119	arylsulfatase activity
DJ013_18990	COG0784	Response regulator, receiver
DJ013_18990	COG2198	Histidine kinase
DJ013_18990	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ013_18990	COG2205	protein histidine kinase activity
DJ013_18995	COG1629	transport
DJ013_18995	COG4206	TonB-dependent receptor
DJ013_19010	COG3119	arylsulfatase activity
DJ013_19035	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_19045	COG1309	transcriptional regulator
DJ013_19055	COG2249	NAD(P)H dehydrogenase (quinone) activity
DJ013_19105	COG1288	antiporter activity
DJ013_19115	COG0113	porphobilinogen synthase activity
DJ013_19120	COG0714	Associated with various cellular activities
DJ013_19125	COG2890	protein-(glutamine-N5) methyltransferase activity
DJ013_19180	COG0251	oxidation-reduction process
DJ013_19195	COG3011	Protein conserved in bacteria
DJ013_19200	COG3279	Response regulator of the LytR AlgR family
DJ013_19225	COG0552	protein localization to endoplasmic reticulum
DJ013_19240	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DJ013_19255	COG4628	conserved protein (DUF2132)
DJ013_19260	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DJ013_19300	COG2942	2-epimerase
DJ013_19335	COG0232	Belongs to the dGTPase family. Type 2 subfamily
DJ013_19360	COG0745	RESPONSE REGULATOR receiver
DJ013_19365	COG5002	protein histidine kinase activity
DJ013_19375	COG1629	transport
DJ013_19375	COG4206	TonB-dependent receptor
DJ013_19385	COG2095	MarC family integral membrane protein
DJ013_19410	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DJ013_19415	COG0159	tryptophan synthase activity
DJ013_19425	COG0133	tryptophan synthase activity
DJ013_19430	COG0135	phosphoribosylanthranilate isomerase activity
DJ013_19435	COG0134	indole-3-glycerol-phosphate synthase activity
DJ013_19445	COG4206	TonB-dependent receptor
DJ013_19445	COG1629	transport
DJ013_19450	COG0049	tRNA binding
DJ013_19455	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DJ013_19465	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DJ013_19475	COG1215	transferase activity, transferring glycosyl groups
DJ013_19480	COG0357	Ribosomal RNA small subunit methyltransferase G
DJ013_19490	COG1946	Acyl-CoA thioesterase
DJ013_19500	COG1609	Transcriptional regulator
DJ013_19505	COG2755	lipolytic protein G-D-S-L family
DJ013_19510	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DJ013_19535	COG0129	dihydroxy-acid dehydratase activity
DJ013_19550	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
DJ013_19555	COG1181	Belongs to the D-alanine--D-alanine ligase family
DJ013_19560	COG0328	RNA-DNA hybrid ribonuclease activity
DJ013_19560	COG3341	Caulimovirus viroplasmin
DJ013_19565	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
DJ013_19570	COG0463	Glycosyl transferase, family 2
DJ013_19580	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DJ013_19585	COG1022	Amp-dependent synthetase and ligase
DJ013_19590	COG4654	Cytochrome c, class I
DJ013_19600	COG1858	cytochrome C peroxidase
DJ013_19610	COG1529	Aldehyde oxidase and xanthine dehydrogenase
DJ013_19655	COG0246	Mannitol dehydrogenase
DJ013_19680	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_19720	COG1376	ErfK ybiS ycfS ynhG family protein
DJ013_19730	COG3119	arylsulfatase activity
DJ013_19735	COG2234	aminopeptidase activity
DJ013_19765	COG3119	arylsulfatase activity
DJ013_19805	COG0339	signal peptide processing
DJ013_19810	COG0513	Belongs to the DEAD box helicase family
DJ013_19820	COG0579	oxidoreductase
DJ013_19830	COG2272	Belongs to the type-B carboxylesterase lipase family
DJ013_19835	COG0556	nucleotide-excision repair
DJ013_19850	COG2095	MarC family integral membrane protein
DJ013_19855	COG0450	alkyl hydroperoxide reductase
DJ013_19860	COG4232	protein-disulfide reductase activity
DJ013_19880	COG0306	phosphate transporter
DJ013_19885	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
DJ013_19900	COG3344	reverse transcriptase
DJ013_19910	COG1070	Carbohydrate kinase
DJ013_19915	COG0513	Belongs to the DEAD box helicase family
DJ013_19930	COG1629	transport
DJ013_19930	COG4206	TonB-dependent receptor
DJ013_19955	COG1082	Xylose isomerase domain protein TIM barrel
DJ013_19965	COG2267	carboxylic ester hydrolase activity
DJ013_19985	COG0673	inositol 2-dehydrogenase activity
DJ013_19990	COG1129	ABC transporter
DJ013_19995	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ013_20000	COG1879	ABC-type sugar transport system periplasmic component
DJ013_20005	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_20005	COG3347	Dehydrogenase
DJ013_20010	COG1070	Carbohydrate kinase
DJ013_20045	COG4206	TonB-dependent receptor
DJ013_20045	COG1629	transport
DJ013_20070	COG3279	Response regulator of the LytR AlgR family
DJ013_20165	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ013_20170	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ013_20195	COG1309	transcriptional regulator
DJ013_20235	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
DJ013_20240	COG0709	Synthesizes selenophosphate from selenide and ATP
DJ013_20245	COG3237	CsbD-like
DJ013_20250	COG1538	Outer membrane efflux protein
DJ013_20270	COG4565	transcriptional regulatory protein
DJ013_20290	COG4565	transcriptional regulatory protein
DJ013_20295	COG0628	permease
DJ013_20300	COG0668	transmembrane transport
DJ013_20310	COG3279	Response regulator of the LytR AlgR family
DJ013_20325	COG3852	Histidine kinase
DJ013_20330	COG4251	negative regulation of phosphorylation
DJ013_20335	COG2204	response regulator
DJ013_20340	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
DJ013_20345	COG4251	negative regulation of phosphorylation
DJ013_20380	COG0783	Belongs to the Dps family
DJ013_20425	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DJ013_20430	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DJ013_20435	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DJ013_20445	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJ013_20465	COG0778	Nitroreductase
DJ013_20470	COG1733	regulation of RNA biosynthetic process
DJ013_20480	COG1028	Short-chain dehydrogenase reductase Sdr
DJ013_20490	COG1741	Belongs to the pirin family
DJ013_20500	COG4251	negative regulation of phosphorylation
DJ013_20515	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DJ013_20520	COG2329	Antibiotic biosynthesis monooxygenase
DJ013_20545	COG3279	Response regulator of the LytR AlgR family
DJ013_20580	COG0713	ATP synthesis coupled electron transport
DJ013_20595	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
DJ013_20610	COG5002	protein histidine kinase activity
DJ013_20640	COG0659	secondary active sulfate transmembrane transporter activity
DJ013_20690	COG3279	Response regulator of the LytR AlgR family
DJ013_20695	COG3275	phosphorelay sensor kinase activity
DJ013_20705	COG0363	glucosamine-6-phosphate deaminase activity
DJ013_20725	COG3279	Response regulator of the LytR AlgR family
DJ013_20740	COG3867	Arabinogalactan endo-beta-1,4-galactanase
DJ013_20745	COG4206	TonB-dependent receptor
DJ013_20745	COG1629	transport
DJ013_20750	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DJ013_20760	COG0366	Alpha amylase catalytic
DJ013_20815	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
DJ013_20820	COG1984	allophanate hydrolase subunit 2
DJ013_20825	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
DJ013_20845	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
DJ013_20845	COG0316	Belongs to the HesB IscA family
DJ013_20850	COG0211	Belongs to the bacterial ribosomal protein bL27 family
DJ013_20855	COG0261	This protein binds to 23S rRNA in the presence of protein L20
DJ013_20865	COG4502	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
DJ013_20905	COG0424	maF-like protein
DJ013_20935	COG0540	Belongs to the ATCase OTCase family
DJ013_20940	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ013_20960	COG2989	Protein conserved in bacteria
DJ013_20965	COG2217	Heavy metal translocating P-type atpase
DJ013_20995	COG0348	domain, Protein
DJ013_21035	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DJ013_21040	COG5002	protein histidine kinase activity
DJ013_21040	COG0784	Response regulator, receiver
DJ013_21040	COG2198	Histidine kinase
DJ013_21060	COG0442	prolyl-tRNA aminoacylation
DJ013_21065	COG1047	Peptidyl-prolyl cis-trans
DJ013_21070	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
DJ013_21105	COG2226	methyltransferase
DJ013_21185	COG0006	proline dipeptidase activity
DJ013_21195	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
DJ013_21220	COG1074	ATP-dependent DNA helicase activity
DJ013_21230	COG0617	tRNA 3'-terminal CCA addition
DJ013_21250	COG0284	orotidine-5'-phosphate decarboxylase activity
DJ013_21260	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DJ013_21280	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DJ013_21285	COG2873	o-acetylhomoserine
DJ013_21305	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DJ013_21305	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DJ013_21310	COG2234	aminopeptidase activity
DJ013_21350	COG0563	adenylate kinase activity
DJ013_21355	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DJ013_21365	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ013_21370	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ013_21375	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ013_21380	COG0649	NAD binding
DJ013_21385	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
DJ013_21400	COG1034	ATP synthesis coupled electron transport
DJ013_21405	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
DJ013_21410	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ013_21415	COG0839	Belongs to the complex I subunit 6 family
DJ013_21425	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
DJ013_21435	COG0575	Belongs to the CDS family
DJ013_21460	COG1960	acyl-CoA dehydrogenase activity
DJ013_21470	COG0488	(ABC) transporter
DJ013_21475	COG0586	Pfam SNARE associated Golgi protein
DJ013_21480	COG2885	chlorophyll binding
DJ013_21485	COG5002	protein histidine kinase activity
DJ013_21500	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ013_21505	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
DJ013_21525	COG4948	Mandelate Racemase Muconate Lactonizing
DJ013_21550	COG0316	Belongs to the HesB IscA family
DJ013_21600	COG0501	Belongs to the peptidase M48B family
DJ013_21620	COG1573	uracil-dna glycosylase
DJ013_21635	COG3119	arylsulfatase activity
DJ013_21645	COG1216	Glycosyl transferase, family 2
DJ013_21645	COG1442	glycosyl transferase family 8
DJ013_21650	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DJ013_21665	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
DJ013_21680	COG0659	secondary active sulfate transmembrane transporter activity
DJ013_21690	COG0668	transmembrane transport
DJ013_21720	COG0006	proline dipeptidase activity
DJ013_21755	COG1045	serine acetyltransferase
DJ013_21760	COG0326	Molecular chaperone. Has ATPase activity
DJ013_21780	COG1739	Uncharacterized protein family UPF0029
DJ013_21785	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DJ013_21800	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DJ013_21825	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DJ013_21840	COG0432	Pfam Uncharacterised protein family UPF0047
DJ013_21845	COG0039	L-malate dehydrogenase activity
DJ013_21855	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DJ013_21860	COG1705	Flagellar rod assembly protein muramidase FlgJ
DJ013_21860	COG1388	LysM domain
DJ013_21870	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
DJ013_21890	COG1695	Transcriptional regulator
DJ013_21910	COG0463	Glycosyl transferase, family 2
DJ013_21935	COG4206	TonB-dependent receptor
DJ013_21935	COG1629	transport
DJ013_21960	COG4771	TonB-dependent receptor
DJ013_21965	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
DJ013_21975	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DJ013_21985	COG1858	cytochrome C peroxidase
DJ013_22045	COG1138	Cytochrome C-type biogenesis protein
DJ013_22055	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DJ013_22060	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
DJ013_22065	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DJ013_22070	COG0356	it plays a direct role in the translocation of protons across the membrane