locus-tag class description c1A100 PF02538 Hydantoinase B/oxoprolinase c1A102 PF05378 Hydantoinase/oxoprolinase N-terminal region c1A102 PF01968 Hydantoinase/oxoprolinase c1A105 PF01968 Hydantoinase/oxoprolinase c1A105 PF05378 Hydantoinase/oxoprolinase N-terminal region c1A18 PF09317 Domain of unknown function (DUF1974) c1A18 PF00441 Acyl-CoA dehydrogenase, C-terminal domain c1A18 PF02771 Acyl-CoA dehydrogenase, N-terminal domain c1A200 PF08882 Acetone carboxylase gamma subunit c1A203 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) c1A206 PF03061 Thioesterase superfamily c1A208 PF00378 Enoyl-CoA hydratase/isomerase c1A208 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain c1A208 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain c1A212 PF02803 Thiolase, C-terminal domain c1A212 PF00108 Thiolase, N-terminal domain c1A232 PF03725 3' exoribonuclease family, domain 2 c1A232 PF01138 3' exoribonuclease family, domain 1 c1A234 PF01725 Ham1 family c1A237 PF01343 Peptidase family S49 c1A25 PF08340 Domain of unknown function (DUF1732) c1A25 PF03755 YicC-like family, N-terminal region c1A283 PF00893 Small Multidrug Resistance protein c1A29 PF00069 Protein kinase domain c1A39 PF06969 HemN C-terminal domain c1A39 PF04055 Radical SAM superfamily c1A43 PF02390 Putative methyltransferase c1A46 PF05690 Thiazole biosynthesis protein ThiG c1A49 PF00589 Phage integrase family c1A49 PF14659 Phage integrase, N-terminal SAM-like domain c1A49 PF13356 Arm DNA-binding domain c1A53 PF03466 LysR substrate binding domain c1A53 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family c1A57 PF02492 CobW/HypB/UreG, nucleotide-binding domain c1A57 PF07683 Cobalamin synthesis protein cobW C-terminal domain c1A60 PF02613 Nitrate reductase delta subunit c1A63 PF13247 4Fe-4S dicluster domain c1A65 PF00384 Molybdopterin oxidoreductase c1A65 PF01568 Molydopterin dinucleotide binding domain c1A74 PF05598 Transposase domain (DUF772) c1A74 PF01609 Transposase DDE domain c1A75 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase c1A75 PF07730 Histidine kinase c1A77 PF00196 Bacterial regulatory proteins, luxR family c1A77 PF00072 Response regulator receiver domain c1A81 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase c1A81 PF13426 PAS domain c1A81 PF13188 PAS domain c1A82 PF00072 Response regulator receiver domain c1A82 PF00196 Bacterial regulatory proteins, luxR family c1A84 PF08241 Methyltransferase domain c1A95 PF00501 AMP-binding enzyme c1A95 PF14535 AMP-binding enzyme C-terminal domain c2A172 PF00108 Thiolase, N-terminal domain c2A172 PF02803 Thiolase, C-terminal domain c2A173 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain c2A173 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain c2A173 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain c2A174 PF00378 Enoyl-CoA hydratase/isomerase c2A175 PF09339 IclR helix-turn-helix domain c2A179 PF00132 Bacterial transferase hexapeptide (six repeats) c2A195 PF07690 Major Facilitator Superfamily c2A204 PF07969 Amidohydrolase family c2A225 PF00665 Integrase core domain c2A227 PF01695 IstB-like ATP binding protein c2A300 PF00072 Response regulator receiver domain c2A300 PF00196 Bacterial regulatory proteins, luxR family c2A301 PF13426 PAS domain c2A301 PF13188 PAS domain c2A301 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase c2A302 PF04055 Radical SAM superfamily c2A303 PF08201 BssC/TutF protein c2A304 PF01228 Glycine radical c2A304 PF02901 Pyruvate formate lyase-like c2A305 PF18512 Benzylsuccinate synthase beta subunit c2A306 PF07728 AAA domain (dynein-related subfamily) c2A306 PF08406 CbbQ/NirQ/NorQ C-terminal c2A309 PF00378 Enoyl-CoA hydratase/isomerase c2A310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain c2A310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain c2A310 PF02770 Acyl-CoA dehydrogenase, middle domain c2A311 PF02515 CoA-transferase family III c2A312 PF02515 CoA-transferase family III c2A315 PF02801 Beta-ketoacyl synthase, C-terminal domain c2A315 PF00109 Beta-ketoacyl synthase, N-terminal domain c2A315 PF14765 Polyketide synthase dehydratase c2A315 PF16197 Ketoacyl-synthetase C-terminal extension c2A315 PF00107 Zinc-binding dehydrogenase c2A315 PF00550 Phosphopantetheine attachment site c2A315 PF08240 Alcohol dehydrogenase GroES-like domain c2A315 PF00698 Acyl transferase domain c2A315 PF08659 KR domain ebA1002 PF02954 Bacterial regulatory protein, Fis family ebA1002 PF00158 Sigma-54 interaction domain ebA1002 PF00072 Response regulator receiver domain ebA1012 PF13247 4Fe-4S dicluster domain ebA1017 PF00384 Molybdopterin oxidoreductase ebA1017 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ebA1017 PF01568 Molydopterin dinucleotide binding domain ebA1021 PF01411 tRNA synthetases class II (A) ebA1021 PF02272 DHHA1 domain ebA1021 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ebA1022 PF01923 Cobalamin adenosyltransferase ebA1024 PF11799 impB/mucB/samB family C-terminal domain ebA1024 PF00817 impB/mucB/samB family ebA1026 PF00793 DAHP synthetase I family ebA1027 PF00994 Probable molybdopterin binding domain ebA1030 PF04751 Protein of unknown function (DUF615) ebA1031 PF01523 Putative modulator of DNA gyrase ebA1032 PF03480 Bacterial extracellular solute-binding protein, family 7 ebA1033 PF03480 Bacterial extracellular solute-binding protein, family 7 ebA1037 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ebA1038 PF00300 Histidine phosphatase superfamily (branch 1) ebA1042 PF00464 Serine hydroxymethyltransferase ebA1044 PF03477 ATP cone domain ebA1045 PF01872 RibD C-terminal domain ebA1045 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ebA1046 PF00899 ThiF family ebA1050 PF13180 PDZ domain ebA1050 PF03572 Peptidase family S41 ebA1051 PF01551 Peptidase family M23 ebA1052 PF00300 Histidine phosphatase superfamily (branch 1) ebA1054 PF00462 Glutaredoxin ebA1056 PF02556 Preprotein translocase subunit SecB ebA1060 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ebA1060 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ebA1065 PF00156 Phosphoribosyl transferase domain ebA1066 PF04055 Radical SAM superfamily ebA1066 PF06968 Biotin and Thiamin Synthesis associated domain ebA1067 PF08241 Methyltransferase domain ebA1071 PF00490 Delta-aminolevulinic acid dehydratase ebA1073 PF01926 50S ribosome-binding GTPase ebA1075 PF00034 Cytochrome c ebA1078 PF00994 Probable molybdopterin binding domain ebA1078 PF03454 MoeA C-terminal region (domain IV) ebA1078 PF03453 MoeA N-terminal region (domain I and II) ebA1080 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ebA1083 PF01895 PhoU domain ebA1086 PF05231 MASE1 ebA1086 PF08447 PAS fold ebA1086 PF13426 PAS domain ebA1086 PF00990 Diguanylate cyclase, GGDEF domain ebA1086 PF00563 EAL domain ebA1086 PF08448 PAS fold ebA1090 PF00583 Acetyltransferase (GNAT) family ebA1090 PF00696 Amino acid kinase family ebA1094 PF04452 RNA methyltransferase ebA1097 PF00459 Inositol monophosphatase family ebA1099 PF00485 Phosphoribulokinase / Uridine kinase family ebA110 PF03481 Putative GTP-binding controlling metal-binding ebA110 PF01300 Telomere recombination ebA1101 PF02779 Transketolase, pyrimidine binding domain ebA1101 PF02780 Transketolase, C-terminal domain ebA1101 PF00456 Transketolase, thiamine diphosphate binding domain ebA1102 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ebA1102 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ebA1103 PF00162 Phosphoglycerate kinase ebA1105 PF00224 Pyruvate kinase, barrel domain ebA1105 PF02887 Pyruvate kinase, alpha/beta domain ebA1107 PF01116 Fructose-bisphosphate aldolase class-II ebA1112 PF00535 Glycosyl transferase family 2 ebA1121 PF00691 OmpA family ebA1121 PF13488 Glycine zipper ebA1125 PF01259 SAICAR synthetase ebA1131 PF01432 Peptidase family M3 ebA1138 PF00398 Ribosomal RNA adenine dimethylase ebA1139 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ebA114 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ebA114 PF02222 ATP-grasp domain ebA1140 PF09312 SurA N-terminal domain ebA1140 PF00639 PPIC-type PPIASE domain ebA1141 PF03968 OstA-like protein ebA1141 PF04453 LPS transport system D ebA1142 PF01636 Phosphotransferase enzyme family ebA1143 PF00483 Nucleotidyl transferase ebA1146 PF00557 Metallopeptidase family M24 ebA1146 PF05195 Aminopeptidase P, N-terminal domain ebA1148 PF01494 FAD binding domain ebA1152 PF01207 Dihydrouridine synthase (Dus) ebA1153 PF01808 AICARFT/IMPCHase bienzyme ebA1153 PF02142 MGS-like domain ebA1155 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ebA1155 PF02843 Phosphoribosylglycinamide synthetase, C domain ebA1155 PF02844 Phosphoribosylglycinamide synthetase, N domain ebA1156 PF01218 Coproporphyrinogen III oxidase ebA116 PF00731 AIR carboxylase ebA1162 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ebA1165 PF02602 Uroporphyrinogen-III synthase HemD ebA1166 PF03900 Porphobilinogen deaminase, C-terminal domain ebA1166 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ebA1167 PF00311 Phosphoenolpyruvate carboxylase ebA1169 PF00072 Response regulator receiver domain ebA1169 PF04397 LytTr DNA-binding domain ebA1170 PF14698 Argininosuccinate lyase C-terminal ebA1170 PF00206 Lyase ebA1175 PF00462 Glutaredoxin ebA1176 PF05175 Methyltransferase small domain ebA1176 PF17827 PrmC N-terminal domain ebA1177 PF03462 PCRF domain ebA1177 PF00472 RF-1 domain ebA1179 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ebA1179 PF01488 Shikimate / quinate 5-dehydrogenase ebA1179 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ebA118 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ebA118 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ebA1181 PF00512 His Kinase A (phospho-acceptor) domain ebA1181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA1181 PF08521 Two-component sensor kinase N-terminal ebA1182 PF00072 Response regulator receiver domain ebA1182 PF00486 Transcriptional regulatory protein, C terminal ebA1185 PF00118 TCP-1/cpn60 chaperonin family ebA1191 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ebA1192 PF01266 FAD dependent oxidoreductase ebA1194 PF04386 Stringent starvation protein B ebA1195 PF00043 Glutathione S-transferase, C-terminal domain ebA1195 PF02798 Glutathione S-transferase, N-terminal domain ebA1196 PF02167 Cytochrome C1 family ebA1197 PF00032 Cytochrome b(C-terminal)/b6/petD ebA1197 PF00033 Cytochrome b/b6/petB ebA1198 PF00355 Rieske [2Fe-2S] domain ebA1198 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ebA1200 PF02132 RecR protein ebA1200 PF13662 Toprim domain ebA1202 PF02575 YbaB/EbfC DNA-binding family ebA1203 PF12169 DNA polymerase III subunits gamma and tau domain III ebA1203 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ebA1203 PF12170 DNA polymerase III tau subunit V interacting with alpha ebA1206 PF00501 AMP-binding enzyme ebA1206 PF13193 AMP-binding enzyme C-terminal domain ebA1210 PF00657 GDSL-like Lipase/Acylhydrolase ebA1210 PF03797 Autotransporter beta-domain ebA1211 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ebA1211 PF04324 BFD-like [2Fe-2S] binding domain ebA1211 PF00384 Molybdopterin oxidoreductase ebA1211 PF01568 Molydopterin dinucleotide binding domain ebA1213 PF07690 Major Facilitator Superfamily ebA1216 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ebA1216 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ebA1216 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA1216 PF18267 Rubredoxin NAD+ reductase C-terminal domain ebA1216 PF04324 BFD-like [2Fe-2S] binding domain ebA1220 PF00082 Subtilase family ebA1223 PF07963 Prokaryotic N-terminal methylation motif ebA1223 PF08334 Type II secretion system (T2SS), protein G ebA1225 PF00482 Type II secretion system (T2SS), protein F ebA1226 PF00437 Type II/IV secretion system protein ebA1239 PF03958 Bacterial type II/III secretion system short domain ebA1239 PF00263 Bacterial type II and III secretion system protein ebA1241 PF08334 Type II secretion system (T2SS), protein G ebA1241 PF07963 Prokaryotic N-terminal methylation motif ebA1246 PF00588 SpoU rRNA Methylase family ebA1246 PF08032 RNA 2'-O ribose methyltransferase substrate binding ebA1247 PF00575 S1 RNA binding domain ebA1247 PF00773 RNB domain ebA1247 PF17876 Cold shock domain ebA1247 PF08461 Ribonuclease R winged-helix domain ebA1247 PF08206 Ribonuclease B OB domain ebA1249 PF00709 Adenylosuccinate synthetase ebA125 PF00196 Bacterial regulatory proteins, luxR family ebA125 PF00072 Response regulator receiver domain ebA1250 PF13393 Histidyl-tRNA synthetase ebA1252 PF01145 SPFH domain / Band 7 family ebA1253 PF12221 Bacterial membrane protein N terminal ebA1253 PF01145 SPFH domain / Band 7 family ebA1254 PF16360 GTP-binding GTPase Middle Region ebA1254 PF13167 GTP-binding GTPase N-terminal ebA1254 PF01926 50S ribosome-binding GTPase ebA1255 PF17209 Hfq protein ebA1256 PF01926 50S ribosome-binding GTPase ebA1256 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ebA1258 PF13360 PQQ-like domain ebA1259 PF09976 Tetratricopeptide repeat-like domain ebA126 PF00512 His Kinase A (phospho-acceptor) domain ebA126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA126 PF00989 PAS fold ebA1260 PF13393 Histidyl-tRNA synthetase ebA1260 PF03129 Anticodon binding domain ebA1261 PF04551 GcpE protein ebA1262 PF13464 Domain of unknown function (DUF4115) ebA1268 PF04055 Radical SAM superfamily ebA1271 PF02629 CoA binding domain ebA1271 PF00549 CoA-ligase ebA1272 PF08442 ATP-grasp domain ebA1272 PF00549 CoA-ligase ebA1283 PF17820 PDZ domain ebA1283 PF13180 PDZ domain ebA1284 PF01784 NIF3 (NGG1p interacting factor 3) ebA1285 PF00902 Sec-independent protein translocase protein (TatC) ebA1290 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ebA1291 PF00977 Histidine biosynthesis protein ebA1293 PF00977 Histidine biosynthesis protein ebA1295 PF00117 Glutamine amidotransferase class-I ebA1296 PF00475 Imidazoleglycerol-phosphate dehydratase ebA1297 PF00155 Aminotransferase class I and II ebA1299 PF00815 Histidinol dehydrogenase ebA1300 PF01634 ATP phosphoribosyltransferase ebA1302 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ebA1304 PF01061 ABC-2 type transporter ebA1306 PF00005 ABC transporter ebA1310 PF04333 MlaA lipoprotein ebA1311 PF02470 MlaD protein ebA1312 PF02405 Permease MlaE ebA1313 PF00005 ABC transporter ebA1314 PF02254 TrkA-N domain ebA1314 PF00999 Sodium/hydrogen exchanger family ebA1314 PF02080 TrkA-C domain ebA1315 PF00571 CBS domain ebA1315 PF01380 SIS domain ebA1320 PF03968 OstA-like protein ebA1321 PF00378 Enoyl-CoA hydratase/isomerase ebA1324 PF00437 Type II/IV secretion system protein ebA1327 PF01553 Acyltransferase ebA133 PF17831 Pyruvate dehydrogenase E1 component middle domain ebA133 PF00456 Transketolase, thiamine diphosphate binding domain ebA1330 PF05746 DALR anticodon binding domain ebA1330 PF02092 Glycyl-tRNA synthetase beta subunit ebA1331 PF02091 Glycyl-tRNA synthetase alpha subunit ebA1334 PF00795 Carbon-nitrogen hydrolase ebA1335 PF03471 Transporter associated domain ebA1335 PF00571 CBS domain ebA1336 PF02130 Uncharacterized protein family UPF0054 ebA1337 PF02562 PhoH-like protein ebA1339 PF01938 TRAM domain ebA1339 PF04055 Radical SAM superfamily ebA1339 PF00919 Uncharacterized protein family UPF0004 ebA135 PF02817 e3 binding domain ebA135 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ebA135 PF00364 Biotin-requiring enzyme ebA1353 PF01695 IstB-like ATP binding protein ebA1354 PF00665 Integrase core domain ebA136 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ebA136 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA1360 PF00589 Phage integrase family ebA1360 PF14659 Phage integrase, N-terminal SAM-like domain ebA1360 PF13356 Arm DNA-binding domain ebA1369 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA1369 PF03466 LysR substrate binding domain ebA1370 PF03449 Transcription elongation factor, N-terminal ebA1370 PF01272 Transcription elongation factor, GreA/GreB, C-term ebA1372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA1372 PF03466 LysR substrate binding domain ebA1373 PF07883 Cupin domain ebA1377 PF01557 Fumarylacetoacetate (FAA) hydrolase family ebA1378 PF01494 FAD binding domain ebA1379 PF13417 Glutathione S-transferase, N-terminal domain ebA1383 PF06779 Uncharacterised MFS-type transporter YbfB ebA1387 PF18075 FtsX extracellular domain ebA1390 PF00005 ABC transporter ebA1393 PF02881 SRP54-type protein, helical bundle domain ebA1393 PF00448 SRP54-type protein, GTPase domain ebA1394 PF00675 Insulinase (Peptidase family M16) ebA1394 PF05193 Peptidase M16 inactive domain ebA1397 PF01467 Cytidylyltransferase-like ebA1400 PF00350 Dynamin family ebA1401 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ebA1401 PF06827 Zinc finger found in FPG and IleRS ebA1401 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ebA1404 PF03550 Outer membrane lipoprotein LolB ebA1405 PF08544 GHMP kinases C terminal ebA1405 PF00288 GHMP kinases N terminal domain ebA1406 PF14572 Phosphoribosyl synthetase-associated domain ebA1406 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ebA1409 PF01386 Ribosomal L25p family ebA1409 PF14693 Ribosomal protein TL5, C-terminal domain ebA1411 PF01195 Peptidyl-tRNA hydrolase ebA1413 PF02547 Queuosine biosynthesis protein ebA1415 PF01702 Queuine tRNA-ribosyltransferase ebA1417 PF13721 SecD export protein N-terminal TM region ebA1417 PF02355 Protein export membrane protein ebA1417 PF07549 SecD/SecF GG Motif ebA1418 PF07549 SecD/SecF GG Motif ebA1418 PF02355 Protein export membrane protein ebA1420 PF00206 Lyase ebA1420 PF08328 Adenylosuccinate lyase C-terminal ebA1421 PF04379 ApaG domain ebA1422 PF03707 Bacterial signalling protein N terminal repeat ebA1422 PF00990 Diguanylate cyclase, GGDEF domain ebA1422 PF00563 EAL domain ebA1430 PF14659 Phage integrase, N-terminal SAM-like domain ebA1430 PF13356 Arm DNA-binding domain ebA1430 PF00589 Phage integrase family ebA1431 PF01960 ArgJ family ebA1433 PF07517 SecA DEAD-like domain ebA1433 PF02810 SEC-C motif ebA1433 PF01043 SecA preprotein cross-linking domain ebA1433 PF07516 SecA Wing and Scaffold domain ebA1436 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ebA1438 PF00091 Tubulin/FtsZ family, GTPase domain ebA1438 PF12327 FtsZ family, C-terminal domain ebA1439 PF02491 SHS2 domain inserted in FTSA ebA1442 PF07478 D-ala D-ala ligase C-terminus ebA1442 PF01820 D-ala D-ala ligase N-terminus ebA1443 PF08245 Mur ligase middle domain ebA1443 PF01225 Mur ligase family, catalytic domain ebA1443 PF02875 Mur ligase family, glutamate ligase domain ebA1444 PF03033 Glycosyltransferase family 28 N-terminal domain ebA1444 PF04101 Glycosyltransferase family 28 C-terminal domain ebA1445 PF01098 Cell cycle protein ebA1447 PF08245 Mur ligase middle domain ebA1448 PF00953 Glycosyl transferase family 4 ebA1448 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ebA1449 PF01225 Mur ligase family, catalytic domain ebA1449 PF08245 Mur ligase middle domain ebA1449 PF02875 Mur ligase family, glutamate ligase domain ebA145 PF02586 SOS response associated peptidase (SRAP) ebA1450 PF08245 Mur ligase middle domain ebA1450 PF02875 Mur ligase family, glutamate ligase domain ebA1450 PF01225 Mur ligase family, catalytic domain ebA1451 PF00905 Penicillin binding protein transpeptidase domain ebA1451 PF03717 Penicillin-binding Protein dimerisation domain ebA1452 PF01795 MraW methylase family ebA1456 PF01979 Amidohydrolase family ebA1457 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ebA1463 PF13580 SIS domain ebA1464 PF04972 BON domain ebA1466 PF02875 Mur ligase family, glutamate ligase domain ebA1466 PF08245 Mur ligase middle domain ebA1466 PF01225 Mur ligase family, catalytic domain ebA1468 PF08534 Redoxin ebA1471 PF01220 Dehydroquinase class II ebA1472 PF00364 Biotin-requiring enzyme ebA1474 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ebA1474 PF00289 Biotin carboxylase, N-terminal domain ebA1474 PF02785 Biotin carboxylase C-terminal domain ebA1477 PF01219 Prokaryotic diacylglycerol kinase ebA148 PF01661 Macro domain ebA1485 PF00294 pfkB family carbohydrate kinase ebA1488 PF01230 HIT domain ebA151 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ebA151 PF00205 Thiamine pyrophosphate enzyme, central domain ebA151 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ebA1516 PF13439 Glycosyltransferase Family 4 ebA1516 PF00534 Glycosyl transferases group 1 ebA1518 PF16363 GDP-mannose 4,6 dehydratase ebA1519 PF01757 Acyltransferase family ebA152 PF01370 NAD dependent epimerase/dehydratase family ebA1520 PF00483 Nucleotidyl transferase ebA1527 PF00534 Glycosyl transferases group 1 ebA1531 PF02397 Bacterial sugar transferase ebA1532 PF02698 DUF218 domain ebA1533 PF00483 Nucleotidyl transferase ebA1533 PF01050 Mannose-6-phosphate isomerase ebA1535 PF00534 Glycosyl transferases group 1 ebA1535 PF13439 Glycosyltransferase Family 4 ebA1543 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system ebA1544 PF13005 zinc-finger binding domain of transposase IS66 ebA1544 PF03050 Transposase IS66 family ebA1544 PF13007 Transposase C of IS166 homeodomain ebA1544 PF13817 IS66 C-terminal element ebA156 PF00115 Cytochrome C and Quinol oxidase polypeptide I ebA1561 PF01381 Helix-turn-helix ebA1593 PF00005 ABC transporter ebA1602 PF00263 Bacterial type II and III secretion system protein ebA1602 PF03958 Bacterial type II/III secretion system short domain ebA1619 PF00482 Type II secretion system (T2SS), protein F ebA1622 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ebA1622 PF00437 Type II/IV secretion system protein ebA1623 PF04989 Cephalosporin hydroxylase ebA1627 PF00149 Calcineurin-like phosphoesterase ebA1629 PF13635 Domain of unknown function (DUF4143) ebA1629 PF13173 AAA domain ebA163 PF00563 EAL domain ebA163 PF00990 Diguanylate cyclase, GGDEF domain ebA163 PF03707 Bacterial signalling protein N terminal repeat ebA1630 PF02719 Polysaccharide biosynthesis protein ebA1631 PF00953 Glycosyl transferase family 4 ebA1635 PF01370 NAD dependent epimerase/dehydratase family ebA1636 PF00534 Glycosyl transferases group 1 ebA1636 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ebA1639 PF01370 NAD dependent epimerase/dehydratase family ebA1642 PF02321 Outer membrane efflux protein ebA1647 PF00873 AcrB/AcrD/AcrF family ebA1649 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ebA165 PF00474 Sodium:solute symporter family ebA166 PF00929 Exonuclease ebA1664 PF01590 GAF domain ebA1664 PF00158 Sigma-54 interaction domain ebA1666 PF03412 Peptidase C39 family ebA1666 PF00005 ABC transporter ebA1666 PF00664 ABC transporter transmembrane region ebA1673 PF13533 Biotin-lipoyl like ebA1675 PF16697 Inner membrane component of T3SS, cytoplasmic domain ebA1679 PF02321 Outer membrane efflux protein ebA168 PF00072 Response regulator receiver domain ebA168 PF00486 Transcriptional regulatory protein, C terminal ebA1686 PF00069 Protein kinase domain ebA1686 PF14032 PknH-like extracellular domain ebA1688 PF03781 Sulfatase-modifying factor enzyme 1 ebA1688 PF00069 Protein kinase domain ebA169 PF00989 PAS fold ebA169 PF00512 His Kinase A (phospho-acceptor) domain ebA169 PF18698 Histidine kinase sensor domain ebA169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA169 PF00672 HAMP domain ebA1699 PF08240 Alcohol dehydrogenase GroES-like domain ebA1699 PF00107 Zinc-binding dehydrogenase ebA1699 PF13823 Alcohol dehydrogenase GroES-associated ebA1702 PF00374 Nickel-dependent hydrogenase ebA1709 PF01169 Uncharacterized protein family UPF0016 ebA1711 PF08543 Phosphomethylpyrimidine kinase ebA1712 PF13667 ThiC-associated domain ebA1712 PF01964 Radical SAM ThiC family ebA172 PF13193 AMP-binding enzyme C-terminal domain ebA172 PF00501 AMP-binding enzyme ebA172 PF16177 Acetyl-coenzyme A synthetase N-terminus ebA1722 PF03692 Putative zinc- or iron-chelating domain ebA1726 PF02673 Bacitracin resistance protein BacA ebA1728 PF05728 Uncharacterised protein family (UPF0227) ebA1729 PF01209 ubiE/COQ5 methyltransferase family ebA1734 PF00773 RNB domain ebA1735 PF01488 Shikimate / quinate 5-dehydrogenase ebA1735 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ebA1735 PF08501 Shikimate dehydrogenase substrate binding domain ebA1739 PF00912 Transglycosylase ebA1741 PF03448 MgtE intracellular N domain ebA1741 PF00571 CBS domain ebA1741 PF01769 Divalent cation transporter ebA1743 PF00202 Aminotransferase class-III ebA1745 PF08543 Phosphomethylpyrimidine kinase ebA1750 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ebA1750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ebA1751 PF02895 Signal transducing histidine kinase, homodimeric domain ebA1751 PF01584 CheW-like domain ebA1751 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA1751 PF09078 CheY binding ebA1751 PF01627 Hpt domain ebA1753 PF02622 Uncharacterized ACR, COG1678 ebA1756 PF03652 Holliday junction resolvase ebA1757 PF00156 Phosphoribosyl transferase domain ebA1759 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ebA1759 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ebA1760 PF01979 Amidohydrolase family ebA1762 PF02594 Uncharacterised ACR, YggU family COG1872 ebA1764 PF02325 YGGT family ebA1766 PF14748 Pyrroline-5-carboxylate reductase dimerisation ebA1766 PF03807 NADP oxidoreductase coenzyme F420-dependent ebA1768 PF01168 Alanine racemase, N-terminal domain ebA1770 PF00437 Type II/IV secretion system protein ebA1772 PF00437 Type II/IV secretion system protein ebA1773 PF01170 Putative RNA methylase family UPF0020 ebA1773 PF02926 THUMP domain ebA1776 PF00970 Oxidoreductase FAD-binding domain ebA1776 PF00111 2Fe-2S iron-sulfur cluster binding domain ebA1776 PF00175 Oxidoreductase NAD-binding domain ebA1782 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ebA1782 PF14489 QueF-like protein ebA1783 PF02321 Outer membrane efflux protein ebA1787 PF00563 EAL domain ebA1787 PF12792 CSS motif domain associated with EAL ebA179 PF00115 Cytochrome C and Quinol oxidase polypeptide I ebA1803 PF00196 Bacterial regulatory proteins, luxR family ebA1803 PF13426 PAS domain ebA1805 PF00529 HlyD membrane-fusion protein of T1SS ebA1805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ebA1807 PF00664 ABC transporter transmembrane region ebA1807 PF00005 ABC transporter ebA1807 PF03412 Peptidase C39 family ebA1809 PF01475 Ferric uptake regulator family ebA1812 PF00005 ABC transporter ebA1813 PF00950 ABC 3 transport family ebA1814 PF01297 Zinc-uptake complex component A periplasmic ebA1815 PF03781 Sulfatase-modifying factor enzyme 1 ebA1815 PF12867 DinB superfamily ebA1817 PF01925 Sulfite exporter TauE/SafE ebA182 PF00510 Cytochrome c oxidase subunit III ebA1822 PF00920 Dehydratase family ebA1823 PF04337 Protein of unknown function, DUF480 ebA1825 PF01790 Prolipoprotein diacylglyceryl transferase ebA183 PF07728 AAA domain (dynein-related subfamily) ebA183 PF08406 CbbQ/NirQ/NorQ C-terminal ebA1830 PF03707 Bacterial signalling protein N terminal repeat ebA1830 PF00563 EAL domain ebA1830 PF00990 Diguanylate cyclase, GGDEF domain ebA1837 PF00210 Ferritin-like domain ebA1841 PF01618 MotA/TolQ/ExbB proton channel family ebA1842 PF02472 Biopolymer transport protein ExbD/TolR ebA1846 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ebA1847 PF02321 Outer membrane efflux protein ebA1848 PF00005 ABC transporter ebA1848 PF02687 FtsX-like permease family ebA1848 PF12704 MacB-like periplasmic core domain ebA1861 PF10634 Fe2+ transport protein ebA1866 PF03239 Iron permease FTR1 family ebA1871 PF01176 Translation initiation factor 1A / IF-1 ebA1874 PF05221 S-adenosyl-L-homocysteine hydrolase ebA1874 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ebA1875 PF02219 Methylenetetrahydrofolate reductase ebA1881 PF05872 Bacterial protein of unknown function (DUF853) ebA189 PF00027 Cyclic nucleotide-binding domain ebA189 PF13545 Crp-like helix-turn-helix domain ebA192 PF00072 Response regulator receiver domain ebA1932 PF07044 Protein of unknown function (DUF1329) ebA1942 PF13495 Phage integrase, N-terminal SAM-like domain ebA1942 PF00589 Phage integrase family ebA1943 PF14319 Transposase zinc-binding domain ebA1943 PF04986 Putative transposase ebA1946 PF02899 Phage integrase, N-terminal SAM-like domain ebA1946 PF00589 Phage integrase family ebA1953 PF02770 Acyl-CoA dehydrogenase, middle domain ebA1953 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA1953 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA1954 PF00378 Enoyl-CoA hydratase/isomerase ebA1957 PF12802 MarR family ebA1959 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA1959 PF02770 Acyl-CoA dehydrogenase, middle domain ebA1959 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA1960 PF00501 AMP-binding enzyme ebA1960 PF13193 AMP-binding enzyme C-terminal domain ebA1961 PF00378 Enoyl-CoA hydratase/isomerase ebA1965 PF08448 PAS fold ebA1965 PF00563 EAL domain ebA1965 PF08447 PAS fold ebA1965 PF00990 Diguanylate cyclase, GGDEF domain ebA1971 PF00529 HlyD membrane-fusion protein of T1SS ebA1971 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ebA1972 PF00873 AcrB/AcrD/AcrF family ebA1973 PF02321 Outer membrane efflux protein ebA1978 PF00210 Ferritin-like domain ebA1979 PF00012 Hsp70 protein ebA1980 PF00012 Hsp70 protein ebA1985 PF18158 Adaptive response protein AidB N-terminal domain ebA1985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA1985 PF02770 Acyl-CoA dehydrogenase, middle domain ebA1986 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA199 PF01695 IstB-like ATP binding protein ebA1993 PF03595 Voltage-dependent anion channel ebA1997 PF00114 Pilin (bacterial filament) ebA1997 PF07963 Prokaryotic N-terminal methylation motif ebA2 PF01381 Helix-turn-helix ebA2 PF00717 Peptidase S24-like ebA200 PF00665 Integrase core domain ebA2008 PF00665 Integrase core domain ebA2009 PF01695 IstB-like ATP binding protein ebA2013 PF01695 IstB-like ATP binding protein ebA2016 PF08668 HDOD domain ebA2016 PF00563 EAL domain ebA2022 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ebA2022 PF00293 NUDIX domain ebA2022 PF09297 NADH pyrophosphatase zinc ribbon domain ebA2023 PF00512 His Kinase A (phospho-acceptor) domain ebA2023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA2023 PF00672 HAMP domain ebA2024 PF00072 Response regulator receiver domain ebA2024 PF00486 Transcriptional regulatory protein, C terminal ebA2026 PF00196 Bacterial regulatory proteins, luxR family ebA2026 PF17874 MalT-like TPR region ebA2038 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ebA2038 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ebA2038 PF00378 Enoyl-CoA hydratase/isomerase ebA204 PF00665 Integrase core domain ebA2046 PF17932 Tetracyclin repressor-like, C-terminal domain ebA2046 PF00440 Bacterial regulatory proteins, tetR family ebA2047 PF00392 Bacterial regulatory proteins, gntR family ebA2047 PF07729 FCD domain ebA2050 PF13193 AMP-binding enzyme C-terminal domain ebA2050 PF00501 AMP-binding enzyme ebA2051 PF01968 Hydantoinase/oxoprolinase ebA2051 PF05378 Hydantoinase/oxoprolinase N-terminal region ebA2053 PF02538 Hydantoinase B/oxoprolinase ebA2055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA2055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA2055 PF02770 Acyl-CoA dehydrogenase, middle domain ebA2062 PF00941 FAD binding domain in molybdopterin dehydrogenase ebA2062 PF03450 CO dehydrogenase flavoprotein C-terminal domain ebA2063 PF00111 2Fe-2S iron-sulfur cluster binding domain ebA2063 PF01799 [2Fe-2S] binding domain ebA2064 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ebA2064 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ebA2066 PF02515 CoA-transferase family III ebA2073 PF07995 Glucose / Sorbosone dehydrogenase ebA208 PF01695 IstB-like ATP binding protein ebA2087 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ebA2089 PF13478 XdhC Rossmann domain ebA2089 PF02625 XdhC and CoxI family ebA2097 PF01042 Endoribonuclease L-PSP ebA2099 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ebA2099 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA2102 PF00199 Catalase ebA2102 PF06628 Catalase-related immune-responsive ebA2110 PF00210 Ferritin-like domain ebA2111 PF00005 ABC transporter ebA2111 PF08402 TOBE domain ebA2113 PF00005 ABC transporter ebA2117 PF00593 TonB dependent receptor ebA2117 PF07715 TonB-dependent Receptor Plug Domain ebA2123 PF01695 IstB-like ATP binding protein ebA2124 PF00665 Integrase core domain ebA2133 PF00155 Aminotransferase class I and II ebA2136 PF03186 CobD/Cbib protein ebA2136 PF17113 Regulatory signalling modulator protein AmpE ebA2143 PF13609 Gram-negative porin ebA2146 PF01739 CheR methyltransferase, SAM binding domain ebA2146 PF01339 CheB methylesterase ebA2146 PF08448 PAS fold ebA2146 PF03705 CheR methyltransferase, all-alpha domain ebA2147 PF03707 Bacterial signalling protein N terminal repeat ebA2147 PF00563 EAL domain ebA2147 PF00990 Diguanylate cyclase, GGDEF domain ebA2148 PF00072 Response regulator receiver domain ebA2148 PF01339 CheB methylesterase ebA2152 PF17284 Spermidine synthase tetramerisation domain ebA2164 PF01494 FAD binding domain ebA2168 PF00529 HlyD membrane-fusion protein of T1SS ebA2168 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ebA2176 PF00873 AcrB/AcrD/AcrF family ebA2180 PF04945 YHS domain ebA2183 PF00672 HAMP domain ebA2183 PF01966 HD domain ebA2186 PF00676 Dehydrogenase E1 component ebA2187 PF02780 Transketolase, C-terminal domain ebA2187 PF02779 Transketolase, pyrimidine binding domain ebA2188 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ebA2188 PF00364 Biotin-requiring enzyme ebA2188 PF02817 e3 binding domain ebA2191 PF00378 Enoyl-CoA hydratase/isomerase ebA2194 PF00583 Acetyltransferase (GNAT) family ebA2194 PF13380 CoA binding domain ebA2194 PF13607 Succinyl-CoA ligase like flavodoxin domain ebA220 PF13356 Arm DNA-binding domain ebA220 PF00589 Phage integrase family ebA2202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA2202 PF03466 LysR substrate binding domain ebA2208 PF04333 MlaA lipoprotein ebA222 PF00582 Universal stress protein family ebA2222 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ebA2222 PF01578 Cytochrome C assembly protein ebA2229 PF00664 ABC transporter transmembrane region ebA2229 PF00005 ABC transporter ebA2233 PF13186 Iron-sulfur cluster-binding domain ebA2233 PF04055 Radical SAM superfamily ebA224 PF00689 Cation transporting ATPase, C-terminus ebA224 PF00690 Cation transporter/ATPase, N-terminus ebA2242 PF00171 Aldehyde dehydrogenase family ebA2244 PF01380 SIS domain ebA2245 PF12804 MobA-like NTP transferase domain ebA2245 PF00132 Bacterial transferase hexapeptide (six repeats) ebA2247 PF01515 Phosphate acetyl/butaryl transferase ebA2248 PF00871 Acetokinase family ebA2251 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA2251 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ebA2252 PF04898 Glutamate synthase central domain ebA2252 PF00310 Glutamine amidotransferases class-II ebA2252 PF01645 Conserved region in glutamate synthase ebA2252 PF01493 GXGXG motif ebA2254 PF01966 HD domain ebA2254 PF13286 Phosphohydrolase-associated domain ebA2256 PF01761 3-dehydroquinate synthase ebA2258 PF01202 Shikimate kinase ebA2259 PF00263 Bacterial type II and III secretion system protein ebA2259 PF11741 AMIN domain ebA2259 PF07660 Secretin and TonB N terminus short domain ebA2259 PF03958 Bacterial type II/III secretion system short domain ebA2268 PF00905 Penicillin binding protein transpeptidase domain ebA2268 PF17092 Penicillin-binding protein OB-like domain ebA2268 PF00912 Transglycosylase ebA2271 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ebA2271 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ebA2273 PF04321 RmlD substrate binding domain ebA2275 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ebA2277 PF00483 Nucleotidyl transferase ebA2278 PF16363 GDP-mannose 4,6 dehydratase ebA2281 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ebA2286 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ebA2293 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ebA2294 PF01040 UbiA prenyltransferase family ebA2295 PF04345 Chorismate lyase ebA2297 PF17191 RecG wedge domain ebA2297 PF00271 Helicase conserved C-terminal domain ebA2297 PF00270 DEAD/DEAH box helicase ebA2303 PF03358 NADPH-dependent FMN reductase ebA2304 PF02678 Pirin ebA2304 PF05726 Pirin C-terminal cupin domain ebA2313 PF00378 Enoyl-CoA hydratase/isomerase ebA2314 PF02803 Thiolase, C-terminal domain ebA2314 PF00108 Thiolase, N-terminal domain ebA2315 PF00378 Enoyl-CoA hydratase/isomerase ebA2315 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ebA2315 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ebA232 PF08546 Ketopantoate reductase PanE/ApbA C terminal ebA232 PF02558 Ketopantoate reductase PanE/ApbA ebA234 PF01487 Type I 3-dehydroquinase ebA240 PF03707 Bacterial signalling protein N terminal repeat ebA240 PF00990 Diguanylate cyclase, GGDEF domain ebA240 PF00563 EAL domain ebA2402 PF04002 RadC-like JAB domain ebA2413 PF00176 SNF2 family N-terminal domain ebA2413 PF00271 Helicase conserved C-terminal domain ebA2416 PF01555 DNA methylase ebA2435 PF06067 Domain of unknown function (DUF932) ebA2443 PF00899 ThiF family ebA2458 PF01131 DNA topoisomerase ebA2458 PF01751 Toprim domain ebA2469 PF13614 AAA domain ebA2481 PF00589 Phage integrase family ebA2481 PF13356 Arm DNA-binding domain ebA2484 PF01695 IstB-like ATP binding protein ebA2485 PF00665 Integrase core domain ebA2486 PF13356 Arm DNA-binding domain ebA2486 PF00589 Phage integrase family ebA251 PF12137 RNA polymerase recycling family C-terminal ebA251 PF18337 RapA N-terminal Tudor like domain ebA251 PF18339 RapA N-terminal Tudor like domain 1 ebA251 PF00176 SNF2 family N-terminal domain ebA251 PF00271 Helicase conserved C-terminal domain ebA2514 PF04002 RadC-like JAB domain ebA2528 PF00106 short chain dehydrogenase ebA2533 PF00005 ABC transporter ebA2533 PF12848 ABC transporter ebA2535 PF01385 Probable transposase ebA2535 PF12323 Helix-turn-helix domain ebA2535 PF07282 Putative transposase DNA-binding domain ebA2541 PF01323 DSBA-like thioredoxin domain ebA2542 PF00892 EamA-like transporter family ebA2545 PF02424 ApbE family ebA2546 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ebA2546 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ebA2549 PF07669 Eco57I restriction-modification methylase ebA2549 PF12950 TaqI-like C-terminal specificity domain ebA2575 PF02508 Rnf-Nqr subunit, membrane protein ebA2576 PF04060 Putative Fe-S cluster ebA2578 PF03116 NQR2, RnfD, RnfE family ebA2579 PF13237 4Fe-4S dicluster domain ebA2579 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ebA2579 PF13375 RnfC Barrel sandwich hybrid domain ebA2579 PF10531 SLBB domain ebA2581 PF04205 FMN-binding domain ebA2585 PF02508 Rnf-Nqr subunit, membrane protein ebA2586 PF03658 RnfH family Ubiquitin ebA2590 PF10011 Predicted membrane protein (DUF2254) ebA2596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA2596 PF00512 His Kinase A (phospho-acceptor) domain ebA2596 PF00989 PAS fold ebA2601 PF00664 ABC transporter transmembrane region ebA2601 PF00005 ABC transporter ebA2607 PF02384 N-6 DNA Methylase ebA2607 PF12161 HsdM N-terminal domain ebA2610 PF01420 Type I restriction modification DNA specificity domain ebA2612 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ebA2612 PF18766 SWI2/SNF2 ATPase ebA2612 PF12008 Type I restriction and modification enzyme - subunit R C terminal ebA2615 PF03466 LysR substrate binding domain ebA2615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA2617 PF01925 Sulfite exporter TauE/SafE ebA2623 PF01507 Phosphoadenosine phosphosulfate reductase family ebA2625 PF01507 Phosphoadenosine phosphosulfate reductase family ebA2628 PF00009 Elongation factor Tu GTP binding domain ebA2630 PF03060 Nitronate monooxygenase ebA2633 PF16200 C-terminal region of band_7 ebA2633 PF01145 SPFH domain / Band 7 family ebA2634 PF00175 Oxidoreductase NAD-binding domain ebA2634 PF00970 Oxidoreductase FAD-binding domain ebA2637 PF10431 C-terminal, D2-small domain, of ClpB protein ebA2637 PF07724 AAA domain (Cdc48 subfamily) ebA2637 PF00004 ATPase family associated with various cellular activities (AAA) ebA2638 PF00227 Proteasome subunit ebA2644 PF01618 MotA/TolQ/ExbB proton channel family ebA2645 PF02472 Biopolymer transport protein ExbD/TolR ebA2650 PF04052 TolB amino-terminal domain ebA2650 PF07676 WD40-like Beta Propeller Repeat ebA2652 PF00691 OmpA family ebA2654 PF13174 Tetratricopeptide repeat ebA2654 PF16331 TolA binding protein trimerisation ebA2656 PF04055 Radical SAM superfamily ebA2659 PF06508 Queuosine biosynthesis protein QueC ebA2666 PF01695 IstB-like ATP binding protein ebA2667 PF00665 Integrase core domain ebA2677 PF00665 Integrase core domain ebA2677 PF08281 Sigma-70, region 4 ebA2680 PF01695 IstB-like ATP binding protein ebA2684 PF07120 Protein of unknown function (DUF1376) ebA269 PF00665 Integrase core domain ebA2691 PF13356 Arm DNA-binding domain ebA2691 PF00589 Phage integrase family ebA2699 PF00633 Helix-hairpin-helix motif ebA2699 PF10576 Iron-sulfur binding domain of endonuclease III ebA2699 PF00730 HhH-GPD superfamily base excision DNA repair protein ebA2699 PF14815 NUDIX domain ebA27 PF00589 Phage integrase family ebA27 PF13495 Phage integrase, N-terminal SAM-like domain ebA270 PF01695 IstB-like ATP binding protein ebA2702 PF00990 Diguanylate cyclase, GGDEF domain ebA2702 PF00563 EAL domain ebA2702 PF03707 Bacterial signalling protein N terminal repeat ebA2706 PF11862 Domain of unknown function (DUF3382) ebA2706 PF02653 Branched-chain amino acid transport system / permease component ebA2710 PF02653 Branched-chain amino acid transport system / permease component ebA2712 PF01741 Large-conductance mechanosensitive channel, MscL ebA2713 PF03458 UPF0126 domain ebA2717 PF00753 Metallo-beta-lactamase superfamily ebA2719 PF00005 ABC transporter ebA2719 PF03459 TOBE domain ebA2720 PF00528 Binding-protein-dependent transport system inner membrane component ebA2722 PF13538 UvrD-like helicase C-terminal domain ebA2723 PF00580 UvrD/REP helicase N-terminal domain ebA2723 PF12705 PD-(D/E)XK nuclease superfamily ebA2723 PF13361 UvrD-like helicase C-terminal domain ebA2724 PF17946 RecC C-terminal domain ebA2728 PF01556 DnaJ C terminal domain ebA2728 PF00226 DnaJ domain ebA2730 PF00011 Hsp20/alpha crystallin family ebA274 PF00271 Helicase conserved C-terminal domain ebA274 PF00176 SNF2 family N-terminal domain ebA2741 PF02386 Cation transport protein ebA2742 PF02254 TrkA-N domain ebA2742 PF02080 TrkA-C domain ebA2749 PF01568 Molydopterin dinucleotide binding domain ebA2749 PF12838 4Fe-4S dicluster domain ebA2749 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ebA2749 PF00384 Molybdopterin oxidoreductase ebA2749 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ebA275 PF00271 Helicase conserved C-terminal domain ebA275 PF00270 DEAD/DEAH box helicase ebA275 PF09369 Domain of unknown function (DUF1998) ebA2750 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ebA2750 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ebA2750 PF10531 SLBB domain ebA2757 PF00501 AMP-binding enzyme ebA2757 PF13193 AMP-binding enzyme C-terminal domain ebA2762 PF01202 Shikimate kinase ebA2768 PF00108 Thiolase, N-terminal domain ebA2768 PF02803 Thiolase, C-terminal domain ebA2774 PF11838 ERAP1-like C-terminal domain ebA2774 PF01433 Peptidase family M1 domain ebA2792 PF12848 ABC transporter ebA2792 PF00005 ABC transporter ebA2794 PF03830 PTS system sorbose subfamily IIB component ebA2794 PF03610 PTS system fructose IIA component ebA2795 PF02896 PEP-utilising enzyme, TIM barrel domain ebA2795 PF00391 PEP-utilising enzyme, mobile domain ebA2795 PF05524 PEP-utilising enzyme, N-terminal ebA2801 PF09345 Domain of unknown function (DUF1987) ebA2804 PF00990 Diguanylate cyclase, GGDEF domain ebA2804 PF00072 Response regulator receiver domain ebA2806 PF00561 alpha/beta hydrolase fold ebA2809 PF07021 Methionine biosynthesis protein MetW ebA2809 PF00561 alpha/beta hydrolase fold ebA2811 PF03707 Bacterial signalling protein N terminal repeat ebA2811 PF00990 Diguanylate cyclase, GGDEF domain ebA2811 PF00563 EAL domain ebA2813 PF07690 Major Facilitator Superfamily ebA2817 PF00484 Carbonic anhydrase ebA2819 PF00271 Helicase conserved C-terminal domain ebA2819 PF17764 3′ DNA-binding domain (3′BD) ebA2819 PF18074 Primosomal protein N C-terminal domain ebA2819 PF00270 DEAD/DEAH box helicase ebA2819 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ebA2822 PF01208 Uroporphyrinogen decarboxylase (URO-D) ebA2824 PF02386 Cation transport protein ebA2825 PF02254 TrkA-N domain ebA2825 PF02080 TrkA-C domain ebA2828 PF02954 Bacterial regulatory protein, Fis family ebA2828 PF00158 Sigma-54 interaction domain ebA2828 PF00072 Response regulator receiver domain ebA2830 PF00672 HAMP domain ebA2830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA2830 PF00512 His Kinase A (phospho-acceptor) domain ebA2830 PF00989 PAS fold ebA2833 PF01029 NusB family ebA2833 PF01189 16S rRNA methyltransferase RsmB/F ebA2834 PF01925 Sulfite exporter TauE/SafE ebA284 PF00580 UvrD/REP helicase N-terminal domain ebA284 PF13361 UvrD-like helicase C-terminal domain ebA2841 PF10396 GTP-binding protein TrmE N-terminus ebA2841 PF01926 50S ribosome-binding GTPase ebA2841 PF12631 MnmE helical domain ebA2842 PF02096 60Kd inner membrane protein ebA2842 PF14849 YidC periplasmic domain ebA2846 PF11638 DnaA N-terminal domain ebA2846 PF00308 Bacterial dnaA protein ebA2846 PF08299 Bacterial dnaA protein helix-turn-helix ebA2847 PF00712 DNA polymerase III beta subunit, N-terminal domain ebA2847 PF02767 DNA polymerase III beta subunit, central domain ebA2847 PF02768 DNA polymerase III beta subunit, C-terminal domain ebA2848 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA2848 PF01751 Toprim domain ebA2848 PF18053 DNA gyrase B subunit insert domain ebA2848 PF00204 DNA gyrase B ebA2848 PF00986 DNA gyrase B subunit, carboxyl terminus ebA2851 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ebA2851 PF18381 YcaO cyclodehydratase C-terminal domain ebA2865 PF00313 'Cold-shock' DNA-binding domain ebA2867 PF12464 Maltose acetyltransferase ebA2867 PF14602 Hexapeptide repeat of succinyl-transferase ebA2870 PF00156 Phosphoribosyl transferase domain ebA2870 PF01738 Dienelactone hydrolase family ebA2875 PF01906 Putative heavy-metal-binding ebA2876 PF12848 ABC transporter ebA2876 PF00005 ABC transporter ebA2878 PF02082 Transcriptional regulator ebA2880 PF00115 Cytochrome C and Quinol oxidase polypeptide I ebA2883 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ebA2883 PF00034 Cytochrome c ebA2889 PF05951 Bacterial protein of unknown function (DUF882) ebA2890 PF01471 Putative peptidoglycan binding domain ebA2890 PF03734 L,D-transpeptidase catalytic domain ebA2896 PF00990 Diguanylate cyclase, GGDEF domain ebA2896 PF00563 EAL domain ebA2896 PF03707 Bacterial signalling protein N terminal repeat ebA29 PF00589 Phage integrase family ebA2905 PF00753 Metallo-beta-lactamase superfamily ebA2907 PF02195 ParB-like nuclease domain ebA2907 PF17762 HTH domain found in ParB protein ebA2912 PF13614 AAA domain ebA2913 PF02527 rRNA small subunit methyltransferase G ebA2915 PF13932 GidA associated domain ebA2915 PF01134 Glucose inhibited division protein A ebA2918 PF08534 Redoxin ebA292 PF00665 Integrase core domain ebA2924 PF03707 Bacterial signalling protein N terminal repeat ebA2924 PF00563 EAL domain ebA2924 PF00990 Diguanylate cyclase, GGDEF domain ebA293 PF01695 IstB-like ATP binding protein ebA2933 PF01292 Prokaryotic cytochrome b561 ebA2935 PF13247 4Fe-4S dicluster domain ebA2936 PF00384 Molybdopterin oxidoreductase ebA2936 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ebA2936 PF01568 Molydopterin dinucleotide binding domain ebA2944 PF02634 FdhD/NarQ family ebA2945 PF12804 MobA-like NTP transferase domain ebA2950 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ebA2951 PF00158 Sigma-54 interaction domain ebA2951 PF00072 Response regulator receiver domain ebA2951 PF02954 Bacterial regulatory protein, Fis family ebA2953 PF01435 Peptidase family M48 ebA2954 PF02911 Formyl transferase, C-terminal domain ebA2954 PF00551 Formyl transferase ebA2958 PF01476 LysM domain ebA2961 PF02481 DNA recombination-mediator protein A ebA2961 PF17782 DprA winged helix domain ebA2962 PF04361 Protein of unknown function (DUF494) ebA2963 PF01131 DNA topoisomerase ebA2963 PF01751 Toprim domain ebA2965 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA2965 PF18113 Rubredoxin binding C-terminal domain ebA2966 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA2966 PF03466 LysR substrate binding domain ebA2969 PF17820 PDZ domain ebA2969 PF13180 PDZ domain ebA2970 PF00005 ABC transporter ebA2970 PF17755 UvrA DNA-binding domain ebA2970 PF17760 UvrA interaction domain ebA2973 PF01132 Elongation factor P (EF-P) OB domain ebA2973 PF08207 Elongation factor P (EF-P) KOW-like domain ebA2973 PF09285 Elongation factor P, C-terminal ebA2976 PF00849 RNA pseudouridylate synthase ebA2976 PF01479 S4 domain ebA298 PF04986 Putative transposase ebA298 PF14319 Transposase zinc-binding domain ebA2982 PF04381 Putative exonuclease, RdgC ebA2985 PF00563 EAL domain ebA2985 PF00990 Diguanylate cyclase, GGDEF domain ebA2985 PF03707 Bacterial signalling protein N terminal repeat ebA2986 PF00072 Response regulator receiver domain ebA2987 PF08446 PAS fold ebA2987 PF00512 His Kinase A (phospho-acceptor) domain ebA2987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA2987 PF01590 GAF domain ebA2987 PF00360 Phytochrome region ebA2992 PF02515 CoA-transferase family III ebA2993 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA2993 PF02770 Acyl-CoA dehydrogenase, middle domain ebA2993 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA2995 PF03466 LysR substrate binding domain ebA2995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA2996 PF00171 Aldehyde dehydrogenase family ebA2999 PF00119 ATP synthase A chain ebA300 PF02913 FAD linked oxidases, C-terminal domain ebA300 PF01565 FAD binding domain ebA3000 PF00137 ATP synthase subunit C ebA3002 PF00430 ATP synthase B/B' CF(0) ebA3003 PF00213 ATP synthase delta (OSCP) subunit ebA3004 PF02874 ATP synthase alpha/beta family, beta-barrel domain ebA3004 PF00306 ATP synthase alpha/beta chain, C terminal domain ebA3004 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ebA3006 PF00231 ATP synthase ebA3007 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ebA3007 PF02874 ATP synthase alpha/beta family, beta-barrel domain ebA3008 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ebA3008 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ebA3016 PF01209 ubiE/COQ5 methyltransferase family ebA3019 PF00072 Response regulator receiver domain ebA3019 PF00486 Transcriptional regulatory protein, C terminal ebA3021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA3021 PF11808 Phosphate regulon sensor protein PhoR ebA3021 PF00512 His Kinase A (phospho-acceptor) domain ebA3021 PF00989 PAS fold ebA3026 PF13230 Glutamine amidotransferases class-II ebA3029 PF02934 GatB/GatE catalytic domain ebA3029 PF02637 GatB domain ebA303 PF00107 Zinc-binding dehydrogenase ebA303 PF08240 Alcohol dehydrogenase GroES-like domain ebA3030 PF01425 Amidase ebA3040 PF00905 Penicillin binding protein transpeptidase domain ebA3040 PF03717 Penicillin-binding Protein dimerisation domain ebA3041 PF01098 Cell cycle protein ebA3043 PF05036 Sporulation related domain ebA3043 PF03330 Lytic transglycolase ebA3044 PF07943 Penicillin-binding protein 5, C-terminal domain ebA3044 PF00768 D-alanyl-D-alanine carboxypeptidase ebA3046 PF01063 Amino-transferase class IV ebA3048 PF03099 Biotin/lipoate A/B protein ligase family ebA3050 PF04055 Radical SAM superfamily ebA3050 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ebA3053 PF13361 UvrD-like helicase C-terminal domain ebA3053 PF00580 UvrD/REP helicase N-terminal domain ebA3055 PF13247 4Fe-4S dicluster domain ebA3056 PF03916 Polysulphide reductase, NrfD ebA306 PF02803 Thiolase, C-terminal domain ebA306 PF00108 Thiolase, N-terminal domain ebA3060 PF00072 Response regulator receiver domain ebA3060 PF00196 Bacterial regulatory proteins, luxR family ebA3063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA3063 PF00512 His Kinase A (phospho-acceptor) domain ebA3067 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ebA3069 PF01476 LysM domain ebA3069 PF04972 BON domain ebA3077 PF02811 PHP domain ebA3077 PF14579 Helix-hairpin-helix motif ebA3077 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ebA3077 PF07733 Bacterial DNA polymerase III alpha NTPase domain ebA3086 PF00717 Peptidase S24-like ebA3086 PF01726 LexA DNA binding domain ebA3087 PF03475 3-alpha domain ebA3087 PF03473 MOSC domain ebA3091 PF04286 Protein of unknown function (DUF445) ebA3092 PF05036 Sporulation related domain ebA3092 PF03330 Lytic transglycolase ebA310 PF02913 FAD linked oxidases, C-terminal domain ebA310 PF01565 FAD binding domain ebA3111 PF00149 Calcineurin-like phosphoesterase ebA3111 PF12320 Type 5 capsule protein repressor C-terminal domain ebA3114 PF07759 Protein of unknown function (DUF1615) ebA3118 PF00107 Zinc-binding dehydrogenase ebA3118 PF08240 Alcohol dehydrogenase GroES-like domain ebA3120 PF00925 GTP cyclohydrolase II ebA3130 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ebA3130 PF09297 NADH pyrophosphatase zinc ribbon domain ebA3130 PF00293 NUDIX domain ebA3133 PF02441 Flavoprotein ebA3134 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ebA3138 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ebA314 PF00682 HMGL-like ebA314 PF02436 Conserved carboxylase domain ebA3141 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ebA3143 PF02896 PEP-utilising enzyme, TIM barrel domain ebA3143 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ebA3143 PF00391 PEP-utilising enzyme, mobile domain ebA3144 PF13193 AMP-binding enzyme C-terminal domain ebA3144 PF00501 AMP-binding enzyme ebA3144 PF00668 Condensation domain ebA3144 PF08241 Methyltransferase domain ebA3144 PF00975 Thioesterase domain ebA3144 PF00391 PEP-utilising enzyme, mobile domain ebA3144 PF00550 Phosphopantetheine attachment site ebA3145 PF02954 Bacterial regulatory protein, Fis family ebA3145 PF00158 Sigma-54 interaction domain ebA3145 PF06505 Activator of aromatic catabolism ebA3145 PF02830 V4R domain ebA3149 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ebA3149 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ebA3149 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ebA3150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ebA3151 PF00909 Ammonium Transporter Family ebA3157 PF13335 Magnesium chelatase, subunit ChlI C-terminal ebA3157 PF01078 Magnesium chelatase, subunit ChlI ebA3158 PF07690 Major Facilitator Superfamily ebA316 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ebA316 PF02785 Biotin carboxylase C-terminal domain ebA316 PF00289 Biotin carboxylase, N-terminal domain ebA3161 PF00171 Aldehyde dehydrogenase family ebA3165 PF02913 FAD linked oxidases, C-terminal domain ebA3165 PF01565 FAD binding domain ebA3166 PF08240 Alcohol dehydrogenase GroES-like domain ebA3166 PF00107 Zinc-binding dehydrogenase ebA3167 PF00005 ABC transporter ebA3169 PF00005 ABC transporter ebA3169 PF12399 Branched-chain amino acid ATP-binding cassette transporter ebA3170 PF02653 Branched-chain amino acid transport system / permease component ebA3170 PF11862 Domain of unknown function (DUF3382) ebA3172 PF02653 Branched-chain amino acid transport system / permease component ebA3173 PF13458 Periplasmic binding protein ebA3175 PF13458 Periplasmic binding protein ebA3180 PF04355 SmpA / OmlA family ebA3184 PF02607 B12 binding domain ebA3184 PF00809 Pterin binding enzyme ebA3184 PF02574 Homocysteine S-methyltransferase ebA3184 PF02310 B12 binding domain ebA3184 PF02965 Vitamin B12 dependent methionine synthase, activation domain ebA3186 PF00111 2Fe-2S iron-sulfur cluster binding domain ebA3186 PF00970 Oxidoreductase FAD-binding domain ebA3186 PF00175 Oxidoreductase NAD-binding domain ebA3192 PF02424 ApbE family ebA3193 PF03929 PepSY-associated TM region ebA3202 PF03150 Di-haem cytochrome c peroxidase ebA3202 PF00034 Cytochrome c ebA321 PF13193 AMP-binding enzyme C-terminal domain ebA321 PF00501 AMP-binding enzyme ebA3210 PF00072 Response regulator receiver domain ebA3214 PF03050 Transposase IS66 family ebA3214 PF13007 Transposase C of IS166 homeodomain ebA3214 PF13817 IS66 C-terminal element ebA3214 PF13005 zinc-finger binding domain of transposase IS66 ebA3224 PF14572 Phosphoribosyl synthetase-associated domain ebA3224 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ebA3236 PF07075 Protein of unknown function (DUF1343) ebA324 PF00158 Sigma-54 interaction domain ebA324 PF02830 V4R domain ebA324 PF06505 Activator of aromatic catabolism ebA324 PF02954 Bacterial regulatory protein, Fis family ebA3244 PF07660 Secretin and TonB N terminus short domain ebA3244 PF07715 TonB-dependent Receptor Plug Domain ebA3244 PF00593 TonB dependent receptor ebA3250 PF03741 Integral membrane protein TerC family ebA3251 PF16658 Class II release factor RF3, C-terminal domain ebA3251 PF03144 Elongation factor Tu domain 2 ebA3251 PF00009 Elongation factor Tu GTP binding domain ebA3277 PF00665 Integrase core domain ebA3277 PF02796 Helix-turn-helix domain of resolvase ebA3279 PF01695 IstB-like ATP binding protein ebA3283 PF01867 CRISPR associated protein Cas1 ebA3297 PF01494 FAD binding domain ebA33 PF00497 Bacterial extracellular solute-binding proteins, family 3 ebA33 PF01464 Transglycosylase SLT domain ebA3316 PF00884 Sulfatase ebA3319 PF00072 Response regulator receiver domain ebA3319 PF00486 Transcriptional regulatory protein, C terminal ebA332 PF07044 Protein of unknown function (DUF1329) ebA3320 PF00512 His Kinase A (phospho-acceptor) domain ebA3320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA3320 PF08521 Two-component sensor kinase N-terminal ebA3323 PF03372 Endonuclease/Exonuclease/phosphatase family ebA3324 PF00156 Phosphoribosyl transferase domain ebA3328 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ebA3328 PF00384 Molybdopterin oxidoreductase ebA3328 PF01568 Molydopterin dinucleotide binding domain ebA3329 PF02146 Sir2 family ebA3337 PF00665 Integrase core domain ebA3338 PF01695 IstB-like ATP binding protein ebA3341 PF01609 Transposase DDE domain ebA3341 PF13808 DDE_Tnp_1-associated ebA3350 PF01850 PIN domain ebA3365 PF01171 PP-loop family ebA3377 PF02798 Glutathione S-transferase, N-terminal domain ebA3377 PF00043 Glutathione S-transferase, C-terminal domain ebA3379 PF01966 HD domain ebA3379 PF12627 Probable RNA and SrmB- binding site of polymerase A ebA3379 PF01743 Poly A polymerase head domain ebA3382 PF01370 NAD dependent epimerase/dehydratase family ebA3385 PF14718 Soluble lytic murein transglycosylase L domain ebA3385 PF01464 Transglycosylase SLT domain ebA3386 PF01812 5-formyltetrahydrofolate cyclo-ligase family ebA3389 PF00291 Pyridoxal-phosphate dependent enzyme ebA3389 PF00585 C-terminal regulatory domain of Threonine dehydratase ebA3390 PF02603 HPr Serine kinase N terminus ebA3390 PF07475 HPr Serine kinase C-terminal domain ebA3391 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ebA3393 PF00309 Sigma-54 factor, Activator interacting domain (AID) ebA3393 PF04552 Sigma-54, DNA binding domain ebA3393 PF04963 Sigma-54 factor, core binding domain ebA3394 PF00005 ABC transporter ebA3396 PF00154 recA bacterial DNA recombination protein ebA3399 PF02464 Competence-damaged protein ebA3402 PF04608 Phosphatidylglycerophosphatase A ebA3404 PF02769 AIR synthase related protein, C-terminal domain ebA3404 PF00586 AIR synthase related protein, N-terminal domain ebA3410 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ebA3410 PF01565 FAD binding domain ebA342 PF01230 HIT domain ebA3426 PF02653 Branched-chain amino acid transport system / permease component ebA3429 PF00005 ABC transporter ebA3430 PF00005 ABC transporter ebA3430 PF12399 Branched-chain amino acid ATP-binding cassette transporter ebA3433 PF13193 AMP-binding enzyme C-terminal domain ebA3433 PF00501 AMP-binding enzyme ebA3436 PF00072 Response regulator receiver domain ebA3436 PF08448 PAS fold ebA3436 PF13188 PAS domain ebA3436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA3436 PF00512 His Kinase A (phospho-acceptor) domain ebA3439 PF00072 Response regulator receiver domain ebA3439 PF00486 Transcriptional regulatory protein, C terminal ebA3445 PF02321 Outer membrane efflux protein ebA3446 PF00529 HlyD membrane-fusion protein of T1SS ebA3446 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ebA3448 PF07690 Major Facilitator Superfamily ebA3463 PF00291 Pyridoxal-phosphate dependent enzyme ebA3463 PF13291 ACT domain ebA3467 PF01842 ACT domain ebA3467 PF00551 Formyl transferase ebA3469 PF00012 Hsp70 protein ebA3470 PF00313 'Cold-shock' DNA-binding domain ebA3471 PF07690 Major Facilitator Superfamily ebA3478 PF01841 Transglutaminase-like superfamily ebA348 PF00816 H-NS histone family ebA3480 PF08534 Redoxin ebA3483 PF05981 CreA protein ebA3490 PF00226 DnaJ domain ebA3490 PF01556 DnaJ C terminal domain ebA3494 PF00625 Guanylate kinase ebA3495 PF01192 RNA polymerase Rpb6 ebA3497 PF04607 Region found in RelA / SpoT proteins ebA3497 PF13291 ACT domain ebA3497 PF02824 TGS domain ebA35 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ebA35 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ebA35 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ebA3500 PF13307 Helicase C-terminal domain ebA3500 PF04851 Type III restriction enzyme, res subunit ebA3500 PF00929 Exonuclease ebA3507 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ebA3507 PF07730 Histidine kinase ebA3507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA3507 PF00672 HAMP domain ebA3508 PF00072 Response regulator receiver domain ebA3508 PF00196 Bacterial regulatory proteins, luxR family ebA3514 PF00005 ABC transporter ebA3516 PF03379 CcmB protein ebA3518 PF01578 Cytochrome C assembly protein ebA3521 PF01578 Cytochrome C assembly protein ebA3521 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ebA3522 PF08534 Redoxin ebA3525 PF03918 Cytochrome C biogenesis protein ebA3534 PF01168 Alanine racemase, N-terminal domain ebA3534 PF00842 Alanine racemase, C-terminal domain ebA3535 PF00884 Sulfatase ebA3537 PF00474 Sodium:solute symporter family ebA3540 PF00132 Bacterial transferase hexapeptide (six repeats) ebA3541 PF00171 Aldehyde dehydrogenase family ebA3542 PF00378 Enoyl-CoA hydratase/isomerase ebA3543 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ebA3543 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ebA3543 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ebA3544 PF03061 Thioesterase superfamily ebA3547 PF05138 Phenylacetic acid catabolic protein ebA3548 PF06243 Phenylacetic acid degradation B ebA3550 PF05138 Phenylacetic acid catabolic protein ebA3551 PF01883 Iron-sulfur cluster assembly protein ebA3553 PF00111 2Fe-2S iron-sulfur cluster binding domain ebA3553 PF00175 Oxidoreductase NAD-binding domain ebA3553 PF00970 Oxidoreductase FAD-binding domain ebA3559 PF00005 ABC transporter ebA3559 PF12399 Branched-chain amino acid ATP-binding cassette transporter ebA3560 PF00005 ABC transporter ebA3561 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ebA3563 PF00271 Helicase conserved C-terminal domain ebA3563 PF00270 DEAD/DEAH box helicase ebA3564 PF01029 NusB family ebA3566 PF00885 6,7-dimethyl-8-ribityllumazine synthase ebA3567 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ebA3567 PF00925 GTP cyclohydrolase II ebA3569 PF00677 Lumazine binding domain ebA3571 PF11412 Disulphide bond corrector protein DsbC ebA3571 PF02683 Cytochrome C biogenesis protein transmembrane region ebA3572 PF03091 CutA1 divalent ion tolerance protein ebA3574 PF00582 Universal stress protein family ebA3576 PF03741 Integral membrane protein TerC family ebA3579 PF01061 ABC-2 type transporter ebA3583 PF00043 Glutathione S-transferase, C-terminal domain ebA3583 PF13417 Glutathione S-transferase, N-terminal domain ebA3584 PF00561 alpha/beta hydrolase fold ebA3597 PF12849 PBP superfamily domain ebA3601 PF13478 XdhC Rossmann domain ebA3601 PF02625 XdhC and CoxI family ebA3602 PF03450 CO dehydrogenase flavoprotein C-terminal domain ebA3602 PF00941 FAD binding domain in molybdopterin dehydrogenase ebA3603 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ebA3603 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ebA3604 PF00111 2Fe-2S iron-sulfur cluster binding domain ebA3604 PF01799 [2Fe-2S] binding domain ebA3606 PF17763 Glutaminase/Asparaginase C-terminal domain ebA3606 PF00710 Asparaginase, N-terminal ebA3608 PF00474 Sodium:solute symporter family ebA3609 PF00202 Aminotransferase class-III ebA3613 PF03109 ABC1 family ebA3614 PF05746 DALR anticodon binding domain ebA3614 PF03485 Arginyl tRNA synthetase N terminal domain ebA3614 PF00750 tRNA synthetases class I (R) ebA3617 PF01323 DSBA-like thioredoxin domain ebA3619 PF05088 Bacterial NAD-glutamate dehydrogenase ebA362 PF16655 PhoD-like phosphatase, N-terminal domain ebA362 PF09423 PhoD-like phosphatase ebA3621 PF02705 K+ potassium transporter ebA3623 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ebA3623 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ebA3624 PF01497 Periplasmic binding protein ebA3628 PF00561 alpha/beta hydrolase fold ebA3628 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ebA3630 PF16123 Hydroxyacylglutathione hydrolase C-terminus ebA3630 PF00753 Metallo-beta-lactamase superfamily ebA3634 PF13411 MerR HTH family regulatory protein ebA3637 PF00484 Carbonic anhydrase ebA3639 PF02803 Thiolase, C-terminal domain ebA3639 PF00108 Thiolase, N-terminal domain ebA364 PF02796 Helix-turn-helix domain of resolvase ebA364 PF00665 Integrase core domain ebA3640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA3640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA3640 PF02770 Acyl-CoA dehydrogenase, middle domain ebA3642 PF00378 Enoyl-CoA hydratase/isomerase ebA3650 PF03668 P-loop ATPase protein family ebA3654 PF08240 Alcohol dehydrogenase GroES-like domain ebA3654 PF00107 Zinc-binding dehydrogenase ebA3657 PF02075 Crossover junction endodeoxyribonuclease RuvC ebA366 PF01695 IstB-like ATP binding protein ebA3662 PF00158 Sigma-54 interaction domain ebA3662 PF00072 Response regulator receiver domain ebA3662 PF02954 Bacterial regulatory protein, Fis family ebA3666 PF00115 Cytochrome C and Quinol oxidase polypeptide I ebA3674 PF01709 Transcriptional regulator ebA3678 PF10531 SLBB domain ebA3682 PF00270 DEAD/DEAH box helicase ebA3682 PF00271 Helicase conserved C-terminal domain ebA3688 PF01497 Periplasmic binding protein ebA3690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ebA3690 PF07685 CobB/CobQ-like glutamine amidotransferase domain ebA3691 PF00378 Enoyl-CoA hydratase/isomerase ebA3695 PF00474 Sodium:solute symporter family ebA37 PF02954 Bacterial regulatory protein, Fis family ebA37 PF00072 Response regulator receiver domain ebA37 PF00158 Sigma-54 interaction domain ebA3705 PF00437 Type II/IV secretion system protein ebA3713 PF00263 Bacterial type II and III secretion system protein ebA3713 PF04972 BON domain ebA3713 PF13629 Pilus formation protein N terminal region ebA3727 PF00072 Response regulator receiver domain ebA3727 PF00196 Bacterial regulatory proteins, luxR family ebA3735 PF00206 Lyase ebA3735 PF10415 Fumarase C C-terminus ebA3736 PF00392 Bacterial regulatory proteins, gntR family ebA3736 PF07729 FCD domain ebA3738 PF02310 B12 binding domain ebA3738 PF01642 Methylmalonyl-CoA mutase ebA3742 PF01039 Carboxyl transferase domain ebA3743 PF00289 Biotin carboxylase, N-terminal domain ebA3743 PF02785 Biotin carboxylase C-terminal domain ebA3743 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ebA3747 PF04228 Putative neutral zinc metallopeptidase ebA3750 PF12833 Helix-turn-helix domain ebA3750 PF02311 AraC-like ligand binding domain ebA3751 PF07690 Major Facilitator Superfamily ebA3757 PF00072 Response regulator receiver domain ebA3757 PF00486 Transcriptional regulatory protein, C terminal ebA3758 PF08448 PAS fold ebA3758 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA3758 PF13188 PAS domain ebA3758 PF00072 Response regulator receiver domain ebA3758 PF00512 His Kinase A (phospho-acceptor) domain ebA3761 PF13426 PAS domain ebA3761 PF00072 Response regulator receiver domain ebA3761 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA3766 PF02310 B12 binding domain ebA3766 PF01642 Methylmalonyl-CoA mutase ebA3772 PF05973 Phage derived protein Gp49-like (DUF891) ebA3777 PF00665 Integrase core domain ebA3781 PF01695 IstB-like ATP binding protein ebA3785 PF03707 Bacterial signalling protein N terminal repeat ebA3785 PF00990 Diguanylate cyclase, GGDEF domain ebA3785 PF00563 EAL domain ebA3787 PF09335 SNARE associated Golgi protein ebA3792 PF02515 CoA-transferase family III ebA3794 PF01627 Hpt domain ebA3794 PF00512 His Kinase A (phospho-acceptor) domain ebA3794 PF00672 HAMP domain ebA3794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA3794 PF00072 Response regulator receiver domain ebA38 PF00512 His Kinase A (phospho-acceptor) domain ebA38 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA38 PF00989 PAS fold ebA3801 PF00072 Response regulator receiver domain ebA3801 PF00196 Bacterial regulatory proteins, luxR family ebA3803 PF01565 FAD binding domain ebA3803 PF02913 FAD linked oxidases, C-terminal domain ebA3804 PF01037 Lrp/AsnC ligand binding domain ebA3808 PF03143 Elongation factor Tu C-terminal domain ebA3808 PF03144 Elongation factor Tu domain 2 ebA3808 PF00009 Elongation factor Tu GTP binding domain ebA381 PF13614 AAA domain ebA3810 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ebA3811 PF00467 KOW motif ebA3811 PF02357 Transcription termination factor nusG ebA3812 PF03946 Ribosomal protein L11, N-terminal domain ebA3812 PF00298 Ribosomal protein L11, RNA binding domain ebA3814 PF00687 Ribosomal protein L1p/L10e family ebA3816 PF00466 Ribosomal protein L10 ebA3818 PF04563 RNA polymerase beta subunit ebA3818 PF04560 RNA polymerase Rpb2, domain 7 ebA3818 PF00562 RNA polymerase Rpb2, domain 6 ebA3818 PF04561 RNA polymerase Rpb2, domain 2 ebA3818 PF10385 RNA polymerase beta subunit external 1 domain ebA3818 PF04565 RNA polymerase Rpb2, domain 3 ebA3819 PF05000 RNA polymerase Rpb1, domain 4 ebA3819 PF00623 RNA polymerase Rpb1, domain 2 ebA3819 PF04998 RNA polymerase Rpb1, domain 5 ebA3819 PF04997 RNA polymerase Rpb1, domain 1 ebA3819 PF04983 RNA polymerase Rpb1, domain 3 ebA3820 PF00164 Ribosomal protein S12/S23 ebA3822 PF00177 Ribosomal protein S7p/S5e ebA3824 PF00009 Elongation factor Tu GTP binding domain ebA3824 PF00679 Elongation factor G C-terminus ebA3824 PF14492 Elongation Factor G, domain II ebA3824 PF03764 Elongation factor G, domain IV ebA3824 PF03144 Elongation factor Tu domain 2 ebA3826 PF00009 Elongation factor Tu GTP binding domain ebA3826 PF03143 Elongation factor Tu C-terminal domain ebA3826 PF03144 Elongation factor Tu domain 2 ebA3828 PF00297 Ribosomal protein L3 ebA3829 PF00573 Ribosomal protein L4/L1 family ebA3831 PF00181 Ribosomal Proteins L2, RNA binding domain ebA3831 PF03947 Ribosomal Proteins L2, C-terminal domain ebA3832 PF00237 Ribosomal protein L22p/L17e ebA3833 PF07650 KH domain ebA3833 PF00189 Ribosomal protein S3, C-terminal domain ebA3834 PF00252 Ribosomal protein L16p/L10e ebA3839 PF00673 ribosomal L5P family C-terminus ebA3839 PF00281 Ribosomal protein L5 ebA3841 PF00347 Ribosomal protein L6 ebA3844 PF03719 Ribosomal protein S5, C-terminal domain ebA3844 PF00333 Ribosomal protein S5, N-terminal domain ebA3846 PF00344 SecY translocase ebA385 PF03050 Transposase IS66 family ebA385 PF13007 Transposase C of IS166 homeodomain ebA385 PF13817 IS66 C-terminal element ebA385 PF13005 zinc-finger binding domain of transposase IS66 ebA3850 PF00411 Ribosomal protein S11 ebA3852 PF01479 S4 domain ebA3852 PF00163 Ribosomal protein S4/S9 N-terminal domain ebA3853 PF01000 RNA polymerase Rpb3/RpoA insert domain ebA3853 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ebA3853 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ebA3856 PF16363 GDP-mannose 4,6 dehydratase ebA3857 PF17760 UvrA interaction domain ebA3857 PF17755 UvrA DNA-binding domain ebA3858 PF07690 Major Facilitator Superfamily ebA3859 PF00436 Single-strand binding protein family ebA3861 PF00753 Metallo-beta-lactamase superfamily ebA3862 PF00155 Aminotransferase class I and II ebA3867 PF00899 ThiF family ebA3873 PF00873 AcrB/AcrD/AcrF family ebA3876 PF02600 Disulfide bond formation protein DsbB ebA3879 PF02525 Flavodoxin-like fold ebA3881 PF02678 Pirin ebA3881 PF05726 Pirin C-terminal cupin domain ebA3882 PF02885 Glycosyl transferase family, helical bundle domain ebA3883 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ebA3883 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ebA3884 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ebA3884 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ebA3889 PF01008 Initiation factor 2 subunit family ebA3890 PF00155 Aminotransferase class I and II ebA3892 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA3892 PF00512 His Kinase A (phospho-acceptor) domain ebA3894 PF00158 Sigma-54 interaction domain ebA3894 PF02954 Bacterial regulatory protein, Fis family ebA3894 PF00072 Response regulator receiver domain ebA3906 PF07690 Major Facilitator Superfamily ebA3910 PF01510 N-acetylmuramoyl-L-alanine amidase ebA3914 PF02589 LUD domain ebA3917 PF13183 4Fe-4S dicluster domain ebA3917 PF11870 Domain of unknown function (DUF3390) ebA3917 PF02589 LUD domain ebA3924 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ebA3926 PF00873 AcrB/AcrD/AcrF family ebA3931 PF08497 Radical SAM N-terminal ebA3931 PF11842 Domain of unknown function (DUF3362) ebA3931 PF04055 Radical SAM superfamily ebA3939 PF00593 TonB dependent receptor ebA3939 PF07715 TonB-dependent Receptor Plug Domain ebA3939 PF07660 Secretin and TonB N terminus short domain ebA3942 PF02773 S-adenosylmethionine synthetase, C-terminal domain ebA3942 PF00438 S-adenosylmethionine synthetase, N-terminal domain ebA3942 PF02772 S-adenosylmethionine synthetase, central domain ebA3949 PF03279 Bacterial lipid A biosynthesis acyltransferase ebA3950 PF01678 Diaminopimelate epimerase ebA3956 PF10672 S-adenosylmethionine-dependent methyltransferase ebA3956 PF17785 PUA-like domain ebA3958 PF05496 Holliday junction DNA helicase RuvB P-loop domain ebA3958 PF05491 RuvB C-terminal winged helix domain ebA3958 PF17864 RuvB AAA lid domain ebA3959 PF07499 RuvA, C-terminal domain ebA3959 PF01330 RuvA N terminal domain ebA3964 PF10150 Ribonuclease E/G family ebA3964 PF00575 S1 RNA binding domain ebA3966 PF02545 Maf-like protein ebA3968 PF02590 Predicted SPOUT methyltransferase ebA3972 PF01467 Cytidylyltransferase-like ebA3979 PF01636 Phosphotransferase enzyme family ebA3981 PF03641 Possible lysine decarboxylase ebA3982 PF01367 5'-3' exonuclease, C-terminal SAM fold ebA3982 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ebA3982 PF01612 3'-5' exonuclease ebA3982 PF00476 DNA polymerase family A ebA3983 PF01235 Sodium:alanine symporter family ebA3984 PF16861 Carbamoyltransferase C-terminus ebA3984 PF02543 Carbamoyltransferase N-terminus ebA3985 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ebA3985 PF00535 Glycosyl transferase family 2 ebA3989 PF01609 Transposase DDE domain ebA3989 PF13808 DDE_Tnp_1-associated ebA3992 PF00664 ABC transporter transmembrane region ebA3992 PF00005 ABC transporter ebA3996 PF00534 Glycosyl transferases group 1 ebA3996 PF13439 Glycosyltransferase Family 4 ebA3997 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ebA3998 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ebA3999 PF01370 NAD dependent epimerase/dehydratase family ebA40 PF02397 Bacterial sugar transferase ebA4001 PF01467 Cytidylyltransferase-like ebA4001 PF00294 pfkB family carbohydrate kinase ebA4005 PF02654 Cobalamin-5-phosphate synthase ebA4008 PF02277 Phosphoribosyltransferase ebA4011 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ebA4019 PF01032 FecCD transport family ebA4020 PF00005 ABC transporter ebA4023 PF12557 Cob(I)alamin adenosyltransferase N terminal ebA4023 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ebA4025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ebA4025 PF10414 Sirohaem synthase dimerisation region ebA4025 PF14824 Sirohaem biosynthesis protein central ebA4027 PF07685 CobB/CobQ-like glutamine amidotransferase domain ebA4027 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ebA4029 PF00881 Nitroreductase family ebA4032 PF03466 LysR substrate binding domain ebA4032 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA4033 PF04336 Acyl carrier protein phosphodiesterase ebA4035 PF00924 Mechanosensitive ion channel ebA4038 PF01464 Transglycosylase SLT domain ebA4038 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ebA4040 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain ebA4040 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain ebA4043 PF00390 Malic enzyme, N-terminal domain ebA4043 PF03949 Malic enzyme, NAD binding domain ebA4043 PF01515 Phosphate acetyl/butaryl transferase ebA4047 PF00768 D-alanyl-D-alanine carboxypeptidase ebA4048 PF01614 Bacterial transcriptional regulator ebA4048 PF09339 IclR helix-turn-helix domain ebA4050 PF02754 Cysteine-rich domain ebA4051 PF02589 LUD domain ebA4051 PF13183 4Fe-4S dicluster domain ebA4051 PF11870 Domain of unknown function (DUF3390) ebA4056 PF00849 RNA pseudouridylate synthase ebA4056 PF01479 S4 domain ebA4058 PF12704 MacB-like periplasmic core domain ebA4058 PF00005 ABC transporter ebA4058 PF02687 FtsX-like permease family ebA4059 PF00005 ABC transporter ebA4059 PF02687 FtsX-like permease family ebA4059 PF12704 MacB-like periplasmic core domain ebA4061 PF12704 MacB-like periplasmic core domain ebA4061 PF02687 FtsX-like permease family ebA4061 PF00005 ABC transporter ebA4065 PF00749 tRNA synthetases class I (E and Q), catalytic domain ebA4065 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ebA4066 PF00924 Mechanosensitive ion channel ebA4067 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ebA4068 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA4068 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ebA4074 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ebA4074 PF04408 Helicase associated domain (HA2) ebA4074 PF00271 Helicase conserved C-terminal domain ebA4074 PF11898 Domain of unknown function (DUF3418) ebA4074 PF00270 DEAD/DEAH box helicase ebA4075 PF01250 Ribosomal protein S6 ebA4078 PF01281 Ribosomal protein L9, N-terminal domain ebA4078 PF03948 Ribosomal protein L9, C-terminal domain ebA4079 PF00772 DnaB-like helicase N terminal domain ebA4079 PF03796 DnaB-like helicase C terminal domain ebA4098 PF01494 FAD binding domain ebA4099 PF10411 Disulfide bond isomerase protein N-terminus ebA4099 PF13098 Thioredoxin-like domain ebA4102 PF00293 NUDIX domain ebA4104 PF07072 Cell division protein ebA4105 PF01121 Dephospho-CoA kinase ebA4109 PF00291 Pyridoxal-phosphate dependent enzyme ebA4111 PF03309 Type III pantothenate kinase ebA4113 PF02237 Biotin protein ligase C terminal domain ebA4113 PF03099 Biotin/lipoate A/B protein ligase family ebA4113 PF08279 HTH domain ebA4116 PF00072 Response regulator receiver domain ebA4116 PF02954 Bacterial regulatory protein, Fis family ebA4116 PF00158 Sigma-54 interaction domain ebA4117 PF00989 PAS fold ebA4117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA4117 PF00512 His Kinase A (phospho-acceptor) domain ebA4125 PF02445 Quinolinate synthetase A protein ebA4126 PF03372 Endonuclease/Exonuclease/phosphatase family ebA4127 PF13091 PLD-like domain ebA4133 PF00749 tRNA synthetases class I (E and Q), catalytic domain ebA4139 PF06071 Protein of unknown function (DUF933) ebA4139 PF01926 50S ribosome-binding GTPase ebA4142 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA4142 PF03466 LysR substrate binding domain ebA4143 PF01027 Inhibitor of apoptosis-promoting Bax1 ebA4146 PF00690 Cation transporter/ATPase, N-terminus ebA4146 PF00689 Cation transporting ATPase, C-terminus ebA4147 PF01595 Cyclin M transmembrane N-terminal domain ebA4147 PF03471 Transporter associated domain ebA4147 PF00571 CBS domain ebA4148 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ebA4149 PF01171 PP-loop family ebA4149 PF09179 TilS substrate binding domain ebA4149 PF11734 TilS substrate C-terminal domain ebA4154 PF00072 Response regulator receiver domain ebA4154 PF00196 Bacterial regulatory proteins, luxR family ebA4156 PF00512 His Kinase A (phospho-acceptor) domain ebA4156 PF00989 PAS fold ebA4156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA4158 PF03480 Bacterial extracellular solute-binding protein, family 7 ebA4159 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ebA4162 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ebA4164 PF02423 Ornithine cyclodeaminase/mu-crystallin family ebA4167 PF02112 cAMP phosphodiesterases class-II ebA4169 PF00437 Type II/IV secretion system protein ebA4169 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ebA4174 PF13419 Haloacid dehalogenase-like hydrolase ebA4177 PF00425 chorismate binding enzyme ebA4177 PF04715 Anthranilate synthase component I, N terminal region ebA4178 PF00085 Thioredoxin ebA4186 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ebA4187 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ebA4190 PF00361 Proton-conducting membrane transporter ebA4192 PF00146 NADH dehydrogenase ebA4193 PF00361 Proton-conducting membrane transporter ebA4199 PF00117 Glutamine amidotransferase class-I ebA4200 PF02885 Glycosyl transferase family, helical bundle domain ebA4200 PF00591 Glycosyl transferase family, a/b domain ebA4201 PF00218 Indole-3-glycerol phosphate synthase ebA4211 PF01625 Peptide methionine sulfoxide reductase ebA4212 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ebA4214 PF01545 Cation efflux family ebA4214 PF16916 Dimerisation domain of Zinc Transporter ebA4224 PF00271 Helicase conserved C-terminal domain ebA4224 PF00270 DEAD/DEAH box helicase ebA4224 PF16124 RecQ zinc-binding ebA4224 PF00570 HRDC domain ebA4224 PF09382 RQC domain ebA4227 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ebA4227 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ebA4228 PF00115 Cytochrome C and Quinol oxidase polypeptide I ebA4229 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 ebA4231 PF00510 Cytochrome c oxidase subunit III ebA4237 PF01040 UbiA prenyltransferase family ebA4238 PF02630 SCO1/SenC ebA4241 PF04545 Sigma-70, region 4 ebA4241 PF04542 Sigma-70 region 2 ebA4241 PF00140 Sigma-70 factor, region 1.2 ebA4244 PF13609 Gram-negative porin ebA4247 PF02563 Polysaccharide biosynthesis/export protein ebA4247 PF10531 SLBB domain ebA4250 PF13614 AAA domain ebA4256 PF01471 Putative peptidoglycan binding domain ebA4256 PF13401 AAA domain ebA4257 PF02350 UDP-N-acetylglucosamine 2-epimerase ebA426 PF13098 Thioredoxin-like domain ebA426 PF10411 Disulfide bond isomerase protein N-terminus ebA4262 PF00534 Glycosyl transferases group 1 ebA4263 PF13537 Glutamine amidotransferase domain ebA4263 PF00733 Asparagine synthase ebA4264 PF13439 Glycosyltransferase Family 4 ebA4265 PF00733 Asparagine synthase ebA4265 PF13537 Glutamine amidotransferase domain ebA4268 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ebA4268 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ebA4268 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ebA4275 PF13439 Glycosyltransferase Family 4 ebA4275 PF00534 Glycosyl transferases group 1 ebA4294 PF04230 Polysaccharide pyruvyl transferase ebA4296 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ebA4296 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ebA4297 PF00501 AMP-binding enzyme ebA4297 PF13193 AMP-binding enzyme C-terminal domain ebA43 PF07859 alpha/beta hydrolase fold ebA4304 PF00535 Glycosyl transferase family 2 ebA4306 PF13808 DDE_Tnp_1-associated ebA4306 PF01609 Transposase DDE domain ebA4308 PF01348 Type II intron maturase ebA4308 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ebA4326 PF13193 AMP-binding enzyme C-terminal domain ebA4326 PF07993 Male sterility protein ebA4326 PF00501 AMP-binding enzyme ebA4326 PF00550 Phosphopantetheine attachment site ebA4326 PF00668 Condensation domain ebA4327 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA4327 PF02770 Acyl-CoA dehydrogenase, middle domain ebA4327 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA4330 PF00696 Amino acid kinase family ebA4332 PF00011 Hsp20/alpha crystallin family ebA4334 PF00293 NUDIX domain ebA4339 PF00152 tRNA synthetases class II (D, K and N) ebA4339 PF02938 GAD domain ebA4339 PF01336 OB-fold nucleic acid binding domain ebA4343 PF06750 Bacterial Peptidase A24 N-terminal domain ebA4343 PF01478 Type IV leader peptidase family ebA4345 PF00482 Type II secretion system (T2SS), protein F ebA4346 PF00437 Type II/IV secretion system protein ebA4346 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ebA4348 PF01578 Cytochrome C assembly protein ebA4351 PF02881 SRP54-type protein, helical bundle domain ebA4351 PF02978 Signal peptide binding domain ebA4351 PF00448 SRP54-type protein, GTPase domain ebA4365 PF04542 Sigma-70 region 2 ebA4365 PF04545 Sigma-70, region 4 ebA4365 PF04539 Sigma-70 region 3 ebA4365 PF00140 Sigma-70 factor, region 1.2 ebA4365 PF03979 Sigma-70 factor, region 1.1 ebA4365 PF04546 Sigma-70, non-essential region ebA4367 PF08278 DNA primase DnaG DnaB-binding ebA4367 PF08275 DNA primase catalytic core, N-terminal domain ebA4367 PF01807 CHC2 zinc finger ebA4367 PF10410 DnaB-helicase binding domain of primase ebA4370 PF01165 Ribosomal protein S21 ebA4371 PF00814 Glycoprotease family ebA4373 PF02660 Glycerol-3-phosphate acyltransferase ebA4376 PF04073 Aminoacyl-tRNA editing domain ebA4378 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ebA4378 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ebA4380 PF00171 Aldehyde dehydrogenase family ebA4383 PF06144 DNA polymerase III, delta subunit ebA4383 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ebA4386 PF08264 Anticodon-binding domain of tRNA ebA4386 PF13603 Leucyl-tRNA synthetase, Domain 2 ebA4386 PF09334 tRNA synthetases class I (M) ebA4386 PF00133 tRNA synthetases class I (I, L, M and V) ebA4390 PF00580 UvrD/REP helicase N-terminal domain ebA4390 PF13361 UvrD-like helicase C-terminal domain ebA4391 PF13614 AAA domain ebA4392 PF00390 Malic enzyme, N-terminal domain ebA4392 PF01515 Phosphate acetyl/butaryl transferase ebA4392 PF03949 Malic enzyme, NAD binding domain ebA4396 PF00107 Zinc-binding dehydrogenase ebA4396 PF08240 Alcohol dehydrogenase GroES-like domain ebA4398 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ebA4398 PF07733 Bacterial DNA polymerase III alpha NTPase domain ebA4398 PF01336 OB-fold nucleic acid binding domain ebA4398 PF02811 PHP domain ebA4398 PF14579 Helix-hairpin-helix motif ebA4399 PF10417 C-terminal domain of 1-Cys peroxiredoxin ebA4399 PF00578 AhpC/TSA family ebA4402 PF00916 Sulfate permease family ebA4402 PF01740 STAS domain ebA4404 PF01588 Putative tRNA binding domain ebA4404 PF09334 tRNA synthetases class I (M) ebA4407 PF04972 BON domain ebA4407 PF00691 OmpA family ebA4409 PF10609 NUBPL iron-transfer P-loop NTPase ebA4412 PF00692 dUTPase ebA4413 PF01276 Orn/Lys/Arg decarboxylase, major domain ebA4413 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ebA4413 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ebA4414 PF00186 Dihydrofolate reductase ebA4415 PF00303 Thymidylate synthase ebA4434 PF01575 MaoC like domain ebA4438 PF02649 Type I GTP cyclohydrolase folE2 ebA4439 PF02780 Transketolase, C-terminal domain ebA4439 PF02779 Transketolase, pyrimidine binding domain ebA4439 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ebA4440 PF00348 Polyprenyl synthetase ebA4444 PF02401 LytB protein ebA4447 PF01252 Signal peptidase (SPase) II ebA4448 PF06827 Zinc finger found in FPG and IleRS ebA4448 PF08264 Anticodon-binding domain of tRNA ebA4448 PF00133 tRNA synthetases class I (I, L, M and V) ebA4449 PF01687 Riboflavin kinase ebA4449 PF06574 FAD synthetase ebA4451 PF01520 N-acetylmuramoyl-L-alanine amidase ebA4451 PF11741 AMIN domain ebA4453 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ebA4454 PF08331 Domain of unknown function (DUF1730) ebA4456 PF01177 Asp/Glu/Hydantoin racemase ebA4460 PF00581 Rhodanese-like domain ebA4462 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ebA4462 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ebA4463 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ebA4463 PF01266 FAD dependent oxidoreductase ebA4464 PF00892 EamA-like transporter family ebA4466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA4466 PF00512 His Kinase A (phospho-acceptor) domain ebA4466 PF00672 HAMP domain ebA4468 PF00072 Response regulator receiver domain ebA4468 PF00486 Transcriptional regulatory protein, C terminal ebA4473 PF00463 Isocitrate lyase family ebA4476 PF03737 Aldolase/RraA ebA4477 PF02861 Clp amino terminal domain, pathogenicity island component ebA4477 PF00004 ATPase family associated with various cellular activities (AAA) ebA4477 PF07724 AAA domain (Cdc48 subfamily) ebA4477 PF17871 AAA lid domain ebA4477 PF10431 C-terminal, D2-small domain, of ClpB protein ebA4482 PF00830 Ribosomal L28 family ebA4484 PF00916 Sulfate permease family ebA4484 PF01740 STAS domain ebA4490 PF02913 FAD linked oxidases, C-terminal domain ebA4490 PF01565 FAD binding domain ebA4491 PF01565 FAD binding domain ebA4492 PF13183 4Fe-4S dicluster domain ebA4492 PF02754 Cysteine-rich domain ebA4496 PF01544 CorA-like Mg2+ transporter protein ebA4497 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ebA4497 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ebA4498 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ebA4500 PF02233 NAD(P) transhydrogenase beta subunit ebA4502 PF00271 Helicase conserved C-terminal domain ebA4502 PF00270 DEAD/DEAH box helicase ebA4504 PF01728 FtsJ-like methyltransferase ebA4504 PF18125 RlmM ferredoxin-like domain ebA4507 PF13416 Bacterial extracellular solute-binding protein ebA4509 PF03009 Glycerophosphoryl diester phosphodiesterase family ebA4512 PF00348 Polyprenyl synthetase ebA4517 PF08281 Sigma-70, region 4 ebA4517 PF04542 Sigma-70 region 2 ebA452 PF03050 Transposase IS66 family ebA452 PF13005 zinc-finger binding domain of transposase IS66 ebA452 PF13817 IS66 C-terminal element ebA452 PF13007 Transposase C of IS166 homeodomain ebA4527 PF00700 Bacterial flagellin C-terminal helical region ebA4527 PF00669 Bacterial flagellin N-terminal helical region ebA4529 PF02535 ZIP Zinc transporter ebA4535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ebA4535 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA4544 PF00115 Cytochrome C and Quinol oxidase polypeptide I ebA4558 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ebA4558 PF13378 Enolase C-terminal domain-like ebA4561 PF00497 Bacterial extracellular solute-binding proteins, family 3 ebA4562 PF00528 Binding-protein-dependent transport system inner membrane component ebA4564 PF00528 Binding-protein-dependent transport system inner membrane component ebA4567 PF00005 ABC transporter ebA4568 PF00478 IMP dehydrogenase / GMP reductase domain ebA4568 PF00571 CBS domain ebA4576 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ebA4578 PF13085 2Fe-2S iron-sulfur cluster binding domain ebA4587 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA4587 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ebA4587 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ebA4588 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ebA4588 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ebA4588 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ebA4589 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ebA4598 PF01053 Cys/Met metabolism PLP-dependent enzyme ebA4602 PF04411 PD-(D/E)XK nuclease superfamily ebA4609 PF00909 Ammonium Transporter Family ebA4612 PF00892 EamA-like transporter family ebA4614 PF03928 Haem-degrading ebA4615 PF05161 MOFRL family ebA4615 PF13660 Domain of unknown function (DUF4147) ebA4617 PF01261 Xylose isomerase-like TIM barrel ebA4621 PF00171 Aldehyde dehydrogenase family ebA4623 PF00465 Iron-containing alcohol dehydrogenase ebA4625 PF00171 Aldehyde dehydrogenase family ebA4627 PF02954 Bacterial regulatory protein, Fis family ebA4627 PF01590 GAF domain ebA4627 PF00158 Sigma-54 interaction domain ebA4638 PF02322 Cytochrome bd terminal oxidase subunit II ebA4639 PF01654 Cytochrome bd terminal oxidase subunit I ebA4644 PF02417 Chromate transporter ebA4649 PF01738 Dienelactone hydrolase family ebA4649 PF00156 Phosphoribosyl transferase domain ebA4655 PF12833 Helix-turn-helix domain ebA4655 PF02311 AraC-like ligand binding domain ebA4656 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA4656 PF02770 Acyl-CoA dehydrogenase, middle domain ebA4656 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA4657 PF01039 Carboxyl transferase domain ebA4659 PF02785 Biotin carboxylase C-terminal domain ebA4659 PF00289 Biotin carboxylase, N-terminal domain ebA4659 PF00364 Biotin-requiring enzyme ebA4659 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ebA4661 PF00501 AMP-binding enzyme ebA4661 PF13193 AMP-binding enzyme C-terminal domain ebA4662 PF00682 HMGL-like ebA4666 PF13193 AMP-binding enzyme C-terminal domain ebA4666 PF00501 AMP-binding enzyme ebA4668 PF01979 Amidohydrolase family ebA4676 PF00923 Transaldolase/Fructose-6-phosphate aldolase ebA4678 PF00291 Pyridoxal-phosphate dependent enzyme ebA4696 PF00158 Sigma-54 interaction domain ebA4696 PF00072 Response regulator receiver domain ebA4696 PF02954 Bacterial regulatory protein, Fis family ebA4700 PF01968 Hydantoinase/oxoprolinase ebA4700 PF05378 Hydantoinase/oxoprolinase N-terminal region ebA4701 PF02538 Hydantoinase B/oxoprolinase ebA4702 PF08882 Acetone carboxylase gamma subunit ebA4717 PF00501 AMP-binding enzyme ebA4717 PF16177 Acetyl-coenzyme A synthetase N-terminus ebA4717 PF13193 AMP-binding enzyme C-terminal domain ebA4718 PF01144 Coenzyme A transferase ebA4719 PF01144 Coenzyme A transferase ebA4722 PF00158 Sigma-54 interaction domain ebA4722 PF02954 Bacterial regulatory protein, Fis family ebA4722 PF01590 GAF domain ebA4723 PF01050 Mannose-6-phosphate isomerase ebA4723 PF00483 Nucleotidyl transferase ebA4724 PF13525 Outer membrane lipoprotein ebA4725 PF00849 RNA pseudouridylate synthase ebA4728 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ebA4729 PF00106 short chain dehydrogenase ebA473 PF00067 Cytochrome P450 ebA4731 PF00106 short chain dehydrogenase ebA4732 PF05233 PHB accumulation regulatory domain ebA4732 PF07879 PHB/PHA accumulation regulator DNA-binding domain ebA4733 PF04055 Radical SAM superfamily ebA4733 PF00919 Uncharacterized protein family UPF0004 ebA4733 PF18693 TRAM domain ebA4736 PF01734 Patatin-like phospholipase ebA4737 PF02913 FAD linked oxidases, C-terminal domain ebA4737 PF01565 FAD binding domain ebA474 PF01797 Transposase IS200 like ebA4742 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ebA4742 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ebA4743 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ebA4743 PF07497 Rho termination factor, RNA-binding domain ebA4743 PF07498 Rho termination factor, N-terminal domain ebA4746 PF11953 Domain of unknown function (DUF3470) ebA4746 PF00037 4Fe-4S binding domain ebA4749 PF00501 AMP-binding enzyme ebA4749 PF13193 AMP-binding enzyme C-terminal domain ebA4751 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ebA4751 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ebA4751 PF00205 Thiamine pyrophosphate enzyme, central domain ebA4753 PF01264 Chorismate synthase ebA4754 PF12832 MFS_1 like family ebA4755 PF01435 Peptidase family M48 ebA4757 PF00330 Aconitase family (aconitate hydratase) ebA4758 PF00694 Aconitase C-terminal domain ebA4760 PF00180 Isocitrate/isopropylmalate dehydrogenase ebA4761 PF02774 Semialdehyde dehydrogenase, dimerisation domain ebA4761 PF01118 Semialdehyde dehydrogenase, NAD binding domain ebA4770 PF01416 tRNA pseudouridine synthase ebA4775 PF00291 Pyridoxal-phosphate dependent enzyme ebA4776 PF00290 Tryptophan synthase alpha chain ebA4777 PF08245 Mur ligase middle domain ebA4777 PF02875 Mur ligase family, glutamate ligase domain ebA4778 PF01039 Carboxyl transferase domain ebA4778 PF17848 Acetyl-coA carboxylase zinc finger domain ebA478 PF00920 Dehydratase family ebA4783 PF00156 Phosphoribosyl transferase domain ebA4785 PF01053 Cys/Met metabolism PLP-dependent enzyme ebA4786 PF00149 Calcineurin-like phosphoesterase ebA4788 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ebA4790 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ebA4792 PF01406 tRNA synthetases class I (C) catalytic domain ebA4792 PF09190 DALR domain ebA4793 PF00684 DnaJ central domain ebA4793 PF01556 DnaJ C terminal domain ebA4793 PF00226 DnaJ domain ebA4794 PF00012 Hsp70 protein ebA4795 PF01025 GrpE ebA4796 PF00069 Protein kinase domain ebA4796 PF03793 PASTA domain ebA48 PF11339 Protein of unknown function (DUF3141) ebA4802 PF00762 Ferrochelatase ebA4803 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ebA4803 PF01628 HrcA protein C terminal domain ebA4805 PF01513 ATP-NAD kinase ebA4808 PF02463 RecF/RecN/SMC N terminal domain ebA4812 PF05173 Dihydrodipicolinate reductase, C-terminus ebA4812 PF01113 Dihydrodipicolinate reductase, N-terminus ebA4813 PF00117 Glutamine amidotransferase class-I ebA4813 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ebA4815 PF02142 MGS-like domain ebA4815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ebA4815 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ebA4816 PF03449 Transcription elongation factor, N-terminal ebA4816 PF01272 Transcription elongation factor, GreA/GreB, C-term ebA4819 PF01985 CRS1 / YhbY (CRM) domain ebA4820 PF01728 FtsJ-like methyltransferase ebA4823 PF06480 FtsH Extracellular ebA4823 PF01434 Peptidase family M41 ebA4823 PF00004 ATPase family associated with various cellular activities (AAA) ebA4823 PF17862 AAA+ lid domain ebA4824 PF00809 Pterin binding enzyme ebA4825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ebA4825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ebA4825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ebA4825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ebA4826 PF12849 PBP superfamily domain ebA4828 PF00528 Binding-protein-dependent transport system inner membrane component ebA4829 PF00528 Binding-protein-dependent transport system inner membrane component ebA483 PF00155 Aminotransferase class I and II ebA483 PF00392 Bacterial regulatory proteins, gntR family ebA4830 PF00005 ABC transporter ebA4831 PF00121 Triosephosphate isomerase ebA4835 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ebA4836 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ebA4837 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ebA4840 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ebA4840 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ebA4840 PF10531 SLBB domain ebA4841 PF00384 Molybdopterin oxidoreductase ebA4841 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ebA4841 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ebA4841 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ebA4841 PF00384 Molybdopterin oxidoreductase ebA4841 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ebA4842 PF00146 NADH dehydrogenase ebA4843 PF12838 4Fe-4S dicluster domain ebA4844 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ebA4846 PF00361 Proton-conducting membrane transporter ebA4846 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ebA4847 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ebA4847 PF00361 Proton-conducting membrane transporter ebA4848 PF00361 Proton-conducting membrane transporter ebA4849 PF00293 NUDIX domain ebA485 PF02627 Carboxymuconolactone decarboxylase family ebA4850 PF02867 Ribonucleotide reductase, barrel domain ebA4850 PF00317 Ribonucleotide reductase, all-alpha domain ebA4850 PF03477 ATP cone domain ebA4853 PF01545 Cation efflux family ebA486 PF02627 Carboxymuconolactone decarboxylase family ebA4860 PF12697 Alpha/beta hydrolase family ebA4861 PF01053 Cys/Met metabolism PLP-dependent enzyme ebA4863 PF13406 Transglycosylase SLT domain ebA4864 PF01272 Transcription elongation factor, GreA/GreB, C-term ebA4864 PF03449 Transcription elongation factor, N-terminal ebA4865 PF00183 Hsp90 protein ebA4865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA4866 PF00654 Voltage gated chloride channel ebA4871 PF01434 Peptidase family M41 ebA4871 PF17862 AAA+ lid domain ebA4871 PF00004 ATPase family associated with various cellular activities (AAA) ebA4872 PF00034 Cytochrome c ebA4874 PF00034 Cytochrome c ebA4877 PF00633 Helix-hairpin-helix motif ebA4877 PF10576 Iron-sulfur binding domain of endonuclease III ebA4877 PF00730 HhH-GPD superfamily base excision DNA repair protein ebA4878 PF02508 Rnf-Nqr subunit, membrane protein ebA4881 PF04205 FMN-binding domain ebA4882 PF03116 NQR2, RnfD, RnfE family ebA4883 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ebA4883 PF12838 4Fe-4S dicluster domain ebA4883 PF13375 RnfC Barrel sandwich hybrid domain ebA4883 PF10531 SLBB domain ebA4884 PF04060 Putative Fe-S cluster ebA4887 PF02508 Rnf-Nqr subunit, membrane protein ebA4888 PF01180 Dihydroorotate dehydrogenase ebA4890 PF04377 Arginine-tRNA-protein transferase, C terminus ebA4890 PF04376 Arginine-tRNA-protein transferase, N terminus ebA4891 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ebA4892 PF00005 ABC transporter ebA4892 PF08402 TOBE domain ebA4893 PF00528 Binding-protein-dependent transport system inner membrane component ebA4904 PF03934 Type II secretion system (T2SS), protein K ebA4906 PF07963 Prokaryotic N-terminal methylation motif ebA4906 PF11612 Type II secretion system (T2SS), protein J ebA4908 PF02501 Type II secretion system (T2SS), protein I ebA4908 PF07963 Prokaryotic N-terminal methylation motif ebA4910 PF12019 Type II transport protein GspH ebA4910 PF07963 Prokaryotic N-terminal methylation motif ebA4913 PF00482 Type II secretion system (T2SS), protein F ebA4914 PF00437 Type II/IV secretion system protein ebA4915 PF03958 Bacterial type II/III secretion system short domain ebA4915 PF00263 Bacterial type II and III secretion system protein ebA492 PF02899 Phage integrase, N-terminal SAM-like domain ebA492 PF00589 Phage integrase family ebA4921 PF00877 NlpC/P60 family ebA493 PF00589 Phage integrase family ebA4933 PF01609 Transposase DDE domain ebA4933 PF13808 DDE_Tnp_1-associated ebA4939 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ebA4939 PF01348 Type II intron maturase ebA494 PF02899 Phage integrase, N-terminal SAM-like domain ebA494 PF00589 Phage integrase family ebA4946 PF02562 PhoH-like protein ebA4946 PF13638 PIN domain ebA4948 PF00578 AhpC/TSA family ebA495 PF02899 Phage integrase, N-terminal SAM-like domain ebA495 PF00589 Phage integrase family ebA4951 PF00155 Aminotransferase class I and II ebA4952 PF00742 Homoserine dehydrogenase ebA4952 PF01842 ACT domain ebA4952 PF03447 Homoserine dehydrogenase, NAD binding domain ebA4954 PF00171 Aldehyde dehydrogenase family ebA4955 PF14821 Threonine synthase N terminus ebA4955 PF00291 Pyridoxal-phosphate dependent enzyme ebA4956 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ebA4956 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ebA4962 PF01256 Carbohydrate kinase ebA4962 PF03853 YjeF-related protein N-terminus ebA4963 PF04293 SpoVR like protein ebA4964 PF04285 Protein of unknown function (DUF444) ebA4966 PF06798 PrkA serine protein kinase C-terminal domain ebA4966 PF08298 PrkA AAA domain ebA4969 PF05697 Bacterial trigger factor protein (TF) ebA4969 PF05698 Bacterial trigger factor protein (TF) C-terminus ebA4969 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ebA497 PF00589 Phage integrase family ebA497 PF13495 Phage integrase, N-terminal SAM-like domain ebA4970 PF00574 Clp protease ebA4971 PF07724 AAA domain (Cdc48 subfamily) ebA4971 PF10431 C-terminal, D2-small domain, of ClpB protein ebA4971 PF06689 ClpX C4-type zinc finger ebA4973 PF00004 ATPase family associated with various cellular activities (AAA) ebA4973 PF05362 Lon protease (S16) C-terminal proteolytic domain ebA4973 PF02190 ATP-dependent protease La (LON) substrate-binding domain ebA4979 PF00871 Acetokinase family ebA4984 PF00270 DEAD/DEAH box helicase ebA4984 PF00271 Helicase conserved C-terminal domain ebA4984 PF17191 RecG wedge domain ebA4989 PF07690 Major Facilitator Superfamily ebA499 PF02899 Phage integrase, N-terminal SAM-like domain ebA499 PF00589 Phage integrase family ebA4998 PF01451 Low molecular weight phosphotyrosine protein phosphatase ebA4999 PF06953 Arsenical resistance operon trans-acting repressor ArsD ebA50 PF05661 Protein of unknown function (DUF808) ebA5000 PF02374 Anion-transporting ATPase ebA5001 PF01758 Sodium Bile acid symporter family ebA5005 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain ebA5005 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 ebA5007 PF18267 Rubredoxin NAD+ reductase C-terminal domain ebA5007 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA5007 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ebA5007 PF04324 BFD-like [2Fe-2S] binding domain ebA5014 PF00005 ABC transporter ebA5015 PF00528 Binding-protein-dependent transport system inner membrane component ebA5018 PF03466 LysR substrate binding domain ebA5018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA5020 PF05368 NmrA-like family ebA5023 PF01292 Prokaryotic cytochrome b561 ebA5028 PF04264 YceI-like domain ebA503 PF13167 GTP-binding GTPase N-terminal ebA503 PF01926 50S ribosome-binding GTPase ebA503 PF16360 GTP-binding GTPase Middle Region ebA5030 PF05175 Methyltransferase small domain ebA5035 PF05170 AsmA family ebA5055 PF07690 Major Facilitator Superfamily ebA5056 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA5056 PF03466 LysR substrate binding domain ebA506 PF03033 Glycosyltransferase family 28 N-terminal domain ebA506 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase ebA5068 PF04055 Radical SAM superfamily ebA5073 PF00561 alpha/beta hydrolase fold ebA5073 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ebA5076 PF00043 Glutathione S-transferase, C-terminal domain ebA5076 PF02798 Glutathione S-transferase, N-terminal domain ebA5077 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ebA5077 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ebA5078 PF13742 OB-fold nucleic acid binding domain ebA5078 PF02601 Exonuclease VII, large subunit ebA508 PF00440 Bacterial regulatory proteins, tetR family ebA508 PF17754 MftR C-terminal domain ebA5081 PF01618 MotA/TolQ/ExbB proton channel family ebA5085 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ebA5086 PF02348 Cytidylyltransferase ebA5087 PF05191 Adenylate kinase, active site lid ebA5088 PF00365 Phosphofructokinase ebA5091 PF03023 Lipid II flippase MurJ ebA5095 PF00202 Aminotransferase class-III ebA5096 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ebA5096 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ebA5097 PF00764 Arginosuccinate synthase ebA5101 PF04461 Protein of unknown function (DUF520) ebA511 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ebA5117 PF06580 Histidine kinase ebA5117 PF07694 5TMR of 5TMR-LYT ebA5123 PF00293 NUDIX domain ebA5126 PF00106 short chain dehydrogenase ebA5128 PF00403 Heavy-metal-associated domain ebA5131 PF00115 Cytochrome C and Quinol oxidase polypeptide I ebA5134 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ebA5134 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ebA5135 PF13746 4Fe-4S dicluster domain ebA5135 PF12801 4Fe-4S binding domain ebA5135 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ebA5139 PF10996 Beta-Casp domain ebA5139 PF00753 Metallo-beta-lactamase superfamily ebA5139 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ebA5140 PF00561 alpha/beta hydrolase fold ebA5140 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ebA5141 PF00027 Cyclic nucleotide-binding domain ebA5141 PF00520 Ion transport protein ebA5149 PF13545 Crp-like helix-turn-helix domain ebA5149 PF00027 Cyclic nucleotide-binding domain ebA5151 PF04055 Radical SAM superfamily ebA5151 PF06969 HemN C-terminal domain ebA5154 PF00403 Heavy-metal-associated domain ebA5156 PF03544 Gram-negative bacterial TonB protein C-terminal ebA5160 PF00128 Alpha amylase, catalytic domain ebA5160 PF16657 Maltogenic Amylase, C-terminal domain ebA5163 PF12833 Helix-turn-helix domain ebA5163 PF14525 AraC-binding-like domain ebA5166 PF07044 Protein of unknown function (DUF1329) ebA5169 PF03176 MMPL family ebA5182 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit ebA5186 PF00005 ABC transporter ebA5186 PF00664 ABC transporter transmembrane region ebA5193 PF17862 AAA+ lid domain ebA5193 PF06480 FtsH Extracellular ebA5193 PF00004 ATPase family associated with various cellular activities (AAA) ebA5193 PF01434 Peptidase family M41 ebA5199 PF17113 Regulatory signalling modulator protein AmpE ebA5199 PF03186 CobD/Cbib protein ebA5202 PF00108 Thiolase, N-terminal domain ebA5202 PF02803 Thiolase, C-terminal domain ebA5204 PF03193 RsgA GTPase ebA5205 PF16491 CAAX prenyl protease N-terminal, five membrane helices ebA5205 PF01435 Peptidase family M48 ebA5206 PF00929 Exonuclease ebA5208 PF00342 Phosphoglucose isomerase ebA5215 PF01197 Ribosomal protein L31 ebA5226 PF02463 RecF/RecN/SMC N terminal domain ebA5230 PF00005 ABC transporter ebA5236 PF02463 RecF/RecN/SMC N terminal domain ebA5241 PF00665 Integrase core domain ebA5242 PF01695 IstB-like ATP binding protein ebA5251 PF02390 Putative methyltransferase ebA5255 PF03695 Uncharacterised protein family (UPF0149) ebA5255 PF02810 SEC-C motif ebA5264 PF00694 Aconitase C-terminal domain ebA5264 PF00330 Aconitase family (aconitate hydratase) ebA5265 PF11791 Aconitate B N-terminal domain ebA5265 PF06434 Aconitate hydratase 2 N-terminus ebA5265 PF00330 Aconitase family (aconitate hydratase) ebA527 PF04002 RadC-like JAB domain ebA5271 PF00733 Asparagine synthase ebA5271 PF13537 Glutamine amidotransferase domain ebA5272 PF02875 Mur ligase family, glutamate ligase domain ebA5272 PF08245 Mur ligase middle domain ebA5272 PF08443 RimK-like ATP-grasp domain ebA5273 PF05343 M42 glutamyl aminopeptidase ebA5278 PF01202 Shikimate kinase ebA5282 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component ebA5284 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component ebA5286 PF01869 BadF/BadG/BcrA/BcrD ATPase family ebA5287 PF01869 BadF/BadG/BcrA/BcrD ATPase family ebA5293 PF07733 Bacterial DNA polymerase III alpha NTPase domain ebA5293 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ebA5293 PF01336 OB-fold nucleic acid binding domain ebA5293 PF14579 Helix-hairpin-helix motif ebA5293 PF02811 PHP domain ebA5294 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ebA5294 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ebA5294 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA5296 PF00378 Enoyl-CoA hydratase/isomerase ebA5297 PF08240 Alcohol dehydrogenase GroES-like domain ebA5297 PF00107 Zinc-binding dehydrogenase ebA5298 PF00378 Enoyl-CoA hydratase/isomerase ebA5301 PF00501 AMP-binding enzyme ebA5301 PF13193 AMP-binding enzyme C-terminal domain ebA5304 PF02653 Branched-chain amino acid transport system / permease component ebA5307 PF12399 Branched-chain amino acid ATP-binding cassette transporter ebA5307 PF00005 ABC transporter ebA5309 PF00005 ABC transporter ebA5311 PF07690 Major Facilitator Superfamily ebA5314 PF00440 Bacterial regulatory proteins, tetR family ebA5314 PF17932 Tetracyclin repressor-like, C-terminal domain ebA5317 PF13193 AMP-binding enzyme C-terminal domain ebA5317 PF00501 AMP-binding enzyme ebA5318 PF00378 Enoyl-CoA hydratase/isomerase ebA5319 PF00108 Thiolase, N-terminal domain ebA5319 PF02803 Thiolase, C-terminal domain ebA5320 PF00106 short chain dehydrogenase ebA5321 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA5321 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA5321 PF12806 Acetyl-CoA dehydrogenase C-terminal like ebA5321 PF02770 Acyl-CoA dehydrogenase, middle domain ebA5333 PF07715 TonB-dependent Receptor Plug Domain ebA5333 PF00593 TonB dependent receptor ebA5341 PF01695 IstB-like ATP binding protein ebA5342 PF00665 Integrase core domain ebA5346 PF13808 DDE_Tnp_1-associated ebA5346 PF01609 Transposase DDE domain ebA5358 PF13609 Gram-negative porin ebA536 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ebA5362 PF03480 Bacterial extracellular solute-binding protein, family 7 ebA5367 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ebA5368 PF00501 AMP-binding enzyme ebA5368 PF13193 AMP-binding enzyme C-terminal domain ebA537 PF02082 Transcriptional regulator ebA5371 PF00072 Response regulator receiver domain ebA5371 PF13188 PAS domain ebA5371 PF08448 PAS fold ebA5371 PF00512 His Kinase A (phospho-acceptor) domain ebA5371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA5375 PF00072 Response regulator receiver domain ebA5375 PF00158 Sigma-54 interaction domain ebA5375 PF02954 Bacterial regulatory protein, Fis family ebA5380 PF01565 FAD binding domain ebA5380 PF02913 FAD linked oxidases, C-terminal domain ebA5381 PF00171 Aldehyde dehydrogenase family ebA539 PF00258 Flavodoxin ebA539 PF00753 Metallo-beta-lactamase superfamily ebA539 PF00301 Rubredoxin ebA5390 PF08223 PaaX-like protein C-terminal domain ebA5390 PF07848 PaaX-like protein ebA5392 PF02634 FdhD/NarQ family ebA5393 PF00384 Molybdopterin oxidoreductase ebA5393 PF10518 TAT (twin-arginine translocation) pathway signal sequence ebA5393 PF10518 TAT (twin-arginine translocation) pathway signal sequence ebA5393 PF01568 Molydopterin dinucleotide binding domain ebA5393 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ebA5393 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ebA5393 PF00384 Molybdopterin oxidoreductase ebA5393 PF01568 Molydopterin dinucleotide binding domain ebA5395 PF13247 4Fe-4S dicluster domain ebA5406 PF14437 MafB19-like deaminase ebA5408 PF01476 LysM domain ebA5408 PF03734 L,D-transpeptidase catalytic domain ebA5414 PF02618 YceG-like family ebA5415 PF02223 Thymidylate kinase ebA5417 PF09115 DNA polymerase III, delta subunit, C terminal ebA5421 PF01026 TatD related DNase ebA5425 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ebA5425 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ebA5427 PF01546 Peptidase family M20/M25/M40 ebA5427 PF07687 Peptidase dimerisation domain ebA5430 PF04055 Radical SAM superfamily ebA5430 PF06463 Molybdenum Cofactor Synthesis C ebA5433 PF05362 Lon protease (S16) C-terminal proteolytic domain ebA5433 PF13654 AAA domain ebA5435 PF13087 AAA domain ebA5435 PF13195 Protein of unknown function (DUF4011) ebA5435 PF13087 AAA domain ebA5435 PF13086 AAA domain ebA5435 PF13195 Protein of unknown function (DUF4011) ebA5435 PF13086 AAA domain ebA5437 PF00155 Aminotransferase class I and II ebA5438 PF12344 Ultra-violet resistance protein B ebA5438 PF04851 Type III restriction enzyme, res subunit ebA5438 PF17757 UvrB interaction domain ebA5438 PF02151 UvrB/uvrC motif ebA5438 PF00271 Helicase conserved C-terminal domain ebA5440 PF01451 Low molecular weight phosphotyrosine protein phosphatase ebA5441 PF12111 Polyribonucleotide phosphorylase C terminal ebA5441 PF10150 Ribonuclease E/G family ebA5441 PF00575 S1 RNA binding domain ebA5443 PF00849 RNA pseudouridylate synthase ebA5443 PF01479 S4 domain ebA5444 PF13419 Haloacid dehalogenase-like hydrolase ebA5446 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ebA5450 PF02545 Maf-like protein ebA5452 PF02620 Large ribosomal RNA subunit accumulation protein YceD ebA5454 PF02504 Fatty acid synthesis protein ebA5455 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ebA5455 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ebA5456 PF00698 Acyl transferase domain ebA5459 PF02801 Beta-ketoacyl synthase, C-terminal domain ebA5459 PF00109 Beta-ketoacyl synthase, N-terminal domain ebA546 PF12697 Alpha/beta hydrolase family ebA5461 PF02910 Fumarate reductase flavoprotein C-term ebA5461 PF00890 FAD binding domain ebA5463 PF08281 Sigma-70, region 4 ebA5463 PF04542 Sigma-70 region 2 ebA5465 PF03888 MucB/RseB N-terminal domain ebA5465 PF17188 MucB/RseB C-terminal domain ebA5470 PF13180 PDZ domain ebA5484 PF04860 Phage portal protein ebA5492 PF13005 zinc-finger binding domain of transposase IS66 ebA5492 PF03050 Transposase IS66 family ebA5492 PF13817 IS66 C-terminal element ebA5492 PF13007 Transposase C of IS166 homeodomain ebA5496 PF00665 Integrase core domain ebA5498 PF01695 IstB-like ATP binding protein ebA550 PF13396 Phospholipase_D-nuclease N-terminal ebA550 PF13091 PLD-like domain ebA551 PF00171 Aldehyde dehydrogenase family ebA551 PF01619 Proline dehydrogenase ebA551 PF14850 DNA-binding domain of Proline dehydrogenase ebA551 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ebA5511 PF00665 Integrase core domain ebA5511 PF08281 Sigma-70, region 4 ebA5514 PF01695 IstB-like ATP binding protein ebA5523 PF03050 Transposase IS66 family ebA5523 PF13817 IS66 C-terminal element ebA5523 PF13005 zinc-finger binding domain of transposase IS66 ebA5523 PF13007 Transposase C of IS166 homeodomain ebA553 PF03334 Na+/H+ antiporter subunit ebA5534 PF00589 Phage integrase family ebA5534 PF14659 Phage integrase, N-terminal SAM-like domain ebA5534 PF13356 Arm DNA-binding domain ebA5535 PF00679 Elongation factor G C-terminus ebA5535 PF06421 GTP-binding protein LepA C-terminus ebA5535 PF03144 Elongation factor Tu domain 2 ebA5535 PF00009 Elongation factor Tu GTP binding domain ebA5536 PF10502 Signal peptidase, peptidase S26 ebA5539 PF14622 Ribonuclease-III-like ebA5539 PF00035 Double-stranded RNA binding motif ebA554 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ebA5540 PF07650 KH domain ebA5540 PF01926 50S ribosome-binding GTPase ebA5541 PF11967 Recombination protein O N terminal ebA5541 PF02565 Recombination protein O C terminal ebA5544 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ebA5547 PF00933 Glycosyl hydrolase family 3 N terminal domain ebA5548 PF08459 UvrC Helix-hairpin-helix N-terminal ebA5548 PF02151 UvrB/uvrC motif ebA5548 PF01541 GIY-YIG catalytic domain ebA5549 PF01066 CDP-alcohol phosphatidyltransferase ebA555 PF01899 Na+/H+ ion antiporter subunit ebA5555 PF02386 Cation transport protein ebA5556 PF02080 TrkA-C domain ebA5556 PF02254 TrkA-N domain ebA556 PF00361 Proton-conducting membrane transporter ebA5561 PF01695 IstB-like ATP binding protein ebA5563 PF00665 Integrase core domain ebA5563 PF02796 Helix-turn-helix domain of resolvase ebA5567 PF01553 Acyltransferase ebA5576 PF13439 Glycosyltransferase Family 4 ebA5576 PF00534 Glycosyl transferases group 1 ebA5579 PF01219 Prokaryotic diacylglycerol kinase ebA558 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ebA558 PF00361 Proton-conducting membrane transporter ebA558 PF13244 Domain of unknown function (DUF4040) ebA558 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ebA5581 PF00534 Glycosyl transferases group 1 ebA5581 PF13439 Glycosyltransferase Family 4 ebA5582 PF00563 EAL domain ebA5582 PF00990 Diguanylate cyclase, GGDEF domain ebA5582 PF03707 Bacterial signalling protein N terminal repeat ebA5610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA5610 PF03466 LysR substrate binding domain ebA5611 PF13607 Succinyl-CoA ligase like flavodoxin domain ebA5611 PF13380 CoA binding domain ebA5611 PF00583 Acetyltransferase (GNAT) family ebA5612 PF01494 FAD binding domain ebA5613 PF07883 Cupin domain ebA5616 PF01557 Fumarylacetoacetate (FAA) hydrolase family ebA5619 PF00378 Enoyl-CoA hydratase/isomerase ebA5620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ebA5620 PF00378 Enoyl-CoA hydratase/isomerase ebA5620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ebA5622 PF01568 Molydopterin dinucleotide binding domain ebA5622 PF00384 Molybdopterin oxidoreductase ebA5622 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ebA563 PF01797 Transposase IS200 like ebA5630 PF12800 4Fe-4S binding domain ebA5630 PF13247 4Fe-4S dicluster domain ebA5637 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ebA5637 PF13378 Enolase C-terminal domain-like ebA5640 PF02515 CoA-transferase family III ebA5641 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA5641 PF02770 Acyl-CoA dehydrogenase, middle domain ebA5641 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA5642 PF00171 Aldehyde dehydrogenase family ebA5643 PF02515 CoA-transferase family III ebA5644 PF13609 Gram-negative porin ebA5649 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ebA5652 PF13378 Enolase C-terminal domain-like ebA5652 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ebA5654 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ebA5654 PF00005 ABC transporter ebA5655 PF00528 Binding-protein-dependent transport system inner membrane component ebA5660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ebA5664 PF00392 Bacterial regulatory proteins, gntR family ebA5664 PF07729 FCD domain ebA5667 PF13607 Succinyl-CoA ligase like flavodoxin domain ebA5667 PF13380 CoA binding domain ebA5667 PF00583 Acetyltransferase (GNAT) family ebA5668 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA5668 PF02770 Acyl-CoA dehydrogenase, middle domain ebA5668 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA5669 PF02770 Acyl-CoA dehydrogenase, middle domain ebA5669 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA5669 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA5670 PF00106 short chain dehydrogenase ebA5678 PF00293 NUDIX domain ebA5680 PF02441 Flavoprotein ebA5686 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ebA5686 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ebA5686 PF00205 Thiamine pyrophosphate enzyme, central domain ebA5708 PF02627 Carboxymuconolactone decarboxylase family ebA5710 PF07690 Major Facilitator Superfamily ebA5712 PF00756 Putative esterase ebA5713 PF00107 Zinc-binding dehydrogenase ebA5713 PF08240 Alcohol dehydrogenase GroES-like domain ebA5715 PF07730 Histidine kinase ebA5715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA5715 PF13492 GAF domain ebA5719 PF00196 Bacterial regulatory proteins, luxR family ebA5719 PF00072 Response regulator receiver domain ebA5720 PF05138 Phenylacetic acid catabolic protein ebA5721 PF06243 Phenylacetic acid degradation B ebA5722 PF05138 Phenylacetic acid catabolic protein ebA5723 PF01883 Iron-sulfur cluster assembly protein ebA5725 PF00175 Oxidoreductase NAD-binding domain ebA5725 PF00111 2Fe-2S iron-sulfur cluster binding domain ebA5725 PF00970 Oxidoreductase FAD-binding domain ebA5729 PF02803 Thiolase, C-terminal domain ebA5729 PF00108 Thiolase, N-terminal domain ebA5732 PF00378 Enoyl-CoA hydratase/isomerase ebA5738 PF00271 Helicase conserved C-terminal domain ebA5738 PF03880 DbpA RNA binding domain ebA5738 PF00270 DEAD/DEAH box helicase ebA5739 PF00491 Arginase family ebA5740 PF01979 Amidohydrolase family ebA5741 PF17391 Urocanase N-terminal domain ebA5741 PF17392 Urocanase C-terminal domain ebA5741 PF01175 Urocanase Rossmann-like domain ebA5742 PF00221 Aromatic amino acid lyase ebA5744 PF00990 Diguanylate cyclase, GGDEF domain ebA5744 PF03707 Bacterial signalling protein N terminal repeat ebA5744 PF00563 EAL domain ebA5750 PF13492 GAF domain ebA5750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA5750 PF07730 Histidine kinase ebA5752 PF00072 Response regulator receiver domain ebA5752 PF00196 Bacterial regulatory proteins, luxR family ebA5755 PF02954 Bacterial regulatory protein, Fis family ebA5755 PF06505 Activator of aromatic catabolism ebA5755 PF00158 Sigma-54 interaction domain ebA5755 PF02830 V4R domain ebA5760 PF00501 AMP-binding enzyme ebA5760 PF13193 AMP-binding enzyme C-terminal domain ebA5761 PF08240 Alcohol dehydrogenase GroES-like domain ebA5761 PF00107 Zinc-binding dehydrogenase ebA5766 PF07044 Protein of unknown function (DUF1329) ebA5771 PF13808 DDE_Tnp_1-associated ebA5771 PF01609 Transposase DDE domain ebA5773 PF00364 Biotin-requiring enzyme ebA5774 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ebA5774 PF00289 Biotin carboxylase, N-terminal domain ebA5774 PF02785 Biotin carboxylase C-terminal domain ebA578 PF03797 Autotransporter beta-domain ebA578 PF12951 Passenger-associated-transport-repeat ebA578 PF00082 Subtilase family ebA5781 PF08241 Methyltransferase domain ebA5781 PF00668 Condensation domain ebA5781 PF00975 Thioesterase domain ebA5781 PF13193 AMP-binding enzyme C-terminal domain ebA5781 PF00550 Phosphopantetheine attachment site ebA5781 PF00391 PEP-utilising enzyme, mobile domain ebA5781 PF00501 AMP-binding enzyme ebA5783 PF02896 PEP-utilising enzyme, TIM barrel domain ebA5783 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ebA5783 PF00391 PEP-utilising enzyme, mobile domain ebA5786 PF01609 Transposase DDE domain ebA5786 PF13808 DDE_Tnp_1-associated ebA5790 PF00384 Molybdopterin oxidoreductase ebA5790 PF01568 Molydopterin dinucleotide binding domain ebA5791 PF13247 4Fe-4S dicluster domain ebA5795 PF02613 Nitrate reductase delta subunit ebA5797 PF00108 Thiolase, N-terminal domain ebA5797 PF02803 Thiolase, C-terminal domain ebA5802 PF03641 Possible lysine decarboxylase ebA5807 PF04011 LemA family ebA5811 PF03922 OmpW family ebA5815 PF01368 DHH family ebA5815 PF02272 DHHA1 domain ebA5815 PF17768 RecJ OB domain ebA5819 PF02687 FtsX-like permease family ebA5819 PF12704 MacB-like periplasmic core domain ebA5820 PF00005 ABC transporter ebA5822 PF00753 Metallo-beta-lactamase superfamily ebA5822 PF03772 Competence protein ebA5827 PF01641 SelR domain ebA5829 PF03618 Kinase/pyrophosphorylase ebA583 PF16657 Maltogenic Amylase, C-terminal domain ebA583 PF00128 Alpha amylase, catalytic domain ebA5830 PF00391 PEP-utilising enzyme, mobile domain ebA5830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ebA5830 PF02896 PEP-utilising enzyme, TIM barrel domain ebA5836 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA5836 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ebA5838 PF17384 RimP C-terminal SH3 domain ebA5838 PF02576 RimP N-terminal domain ebA584 PF02685 Glucokinase ebA5840 PF08529 NusA N-terminal domain ebA5840 PF13184 NusA-like KH domain ebA5841 PF11987 Translation-initiation factor 2 ebA5841 PF04760 Translation initiation factor IF-2, N-terminal region ebA5841 PF08364 Bacterial translation initiation factor IF-2 associated region ebA5841 PF00009 Elongation factor Tu GTP binding domain ebA5842 PF02033 Ribosome-binding factor A ebA5843 PF09157 Pseudouridine synthase II TruB, C-terminal ebA5843 PF01509 TruB family pseudouridylate synthase (N terminal domain) ebA5843 PF16198 tRNA pseudouridylate synthase B C-terminal domain ebA5844 PF00312 Ribosomal protein S15 ebA5846 PF00013 KH domain ebA5846 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ebA5846 PF01138 3' exoribonuclease family, domain 1 ebA5846 PF03725 3' exoribonuclease family, domain 2 ebA5846 PF00575 S1 RNA binding domain ebA5850 PF05973 Phage derived protein Gp49-like (DUF891) ebA5855 PF17191 RecG wedge domain ebA5855 PF13749 Putative ATP-dependent DNA helicase recG C-terminal ebA5855 PF00270 DEAD/DEAH box helicase ebA5857 PF00753 Metallo-beta-lactamase superfamily ebA5857 PF10996 Beta-Casp domain ebA5857 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ebA587 PF00149 Calcineurin-like phosphoesterase ebA5870 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ebA5870 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ebA5870 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ebA5873 PF01370 NAD dependent epimerase/dehydratase family ebA5878 PF00132 Bacterial transferase hexapeptide (six repeats) ebA5881 PF00534 Glycosyl transferases group 1 ebA5885 PF08485 Polysaccharide biosynthesis protein C-terminal ebA5885 PF02719 Polysaccharide biosynthesis protein ebA5887 PF01370 NAD dependent epimerase/dehydratase family ebA5890 PF02350 UDP-N-acetylglucosamine 2-epimerase ebA5895 PF02463 RecF/RecN/SMC N terminal domain ebA590 PF00781 Diacylglycerol kinase catalytic domain ebA5900 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ebA5901 PF02719 Polysaccharide biosynthesis protein ebA5903 PF02397 Bacterial sugar transferase ebA5904 PF00132 Bacterial transferase hexapeptide (six repeats) ebA5907 PF02719 Polysaccharide biosynthesis protein ebA5917 PF02463 RecF/RecN/SMC N terminal domain ebA5943 PF09820 Predicted AAA-ATPase ebA5943 PF08011 PD-(D/E)XK nuclease superfamily ebA5947 PF00665 Integrase core domain ebA5948 PF01695 IstB-like ATP binding protein ebA595 PF05958 tRNA (Uracil-5-)-methyltransferase ebA596 PF00155 Aminotransferase class I and II ebA598 PF00884 Sulfatase ebA5980 PF01850 PIN domain ebA5982 PF08335 GlnD PII-uridylyltransferase ebA5982 PF01966 HD domain ebA5984 PF00557 Metallopeptidase family M24 ebA5986 PF00318 Ribosomal protein S2 ebA5987 PF00889 Elongation factor TS ebA5988 PF00696 Amino acid kinase family ebA5990 PF01765 Ribosome recycling factor ebA5991 PF01255 Putative undecaprenyl diphosphate synthase ebA5994 PF13288 DXP reductoisomerase C-terminal domain ebA5994 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ebA5994 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ebA5995 PF17820 PDZ domain ebA5995 PF13180 PDZ domain ebA5995 PF02163 Peptidase family M50 ebA5996 PF07244 Surface antigen variable number repeat ebA5996 PF01103 Surface antigen ebA5998 PF00132 Bacterial transferase hexapeptide (six repeats) ebA5998 PF14602 Hexapeptide repeat of succinyl-transferase ebA5998 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ebA5999 PF07977 FabA-like domain ebA6 PF07963 Prokaryotic N-terminal methylation motif ebA6 PF00114 Pilin (bacterial filament) ebA600 PF00535 Glycosyl transferase family 2 ebA6000 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ebA6000 PF00132 Bacterial transferase hexapeptide (six repeats) ebA6002 PF02684 Lipid-A-disaccharide synthetase ebA6003 PF01351 Ribonuclease HII ebA6008 PF00588 SpoU rRNA Methylase family ebA6008 PF08032 RNA 2'-O ribose methyltransferase substrate binding ebA6013 PF08241 Methyltransferase domain ebA6017 PF12697 Alpha/beta hydrolase family ebA6018 PF00155 Aminotransferase class I and II ebA6019 PF00202 Aminotransferase class-III ebA6021 PF03883 Peroxide stress protein YaaA ebA6023 PF18027 Cytosolic carboxypeptidase N-terminal domain ebA6023 PF00246 Zinc carboxypeptidase ebA6035 PF00793 DAHP synthetase I family ebA6036 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA6036 PF18113 Rubredoxin binding C-terminal domain ebA6041 PF03707 Bacterial signalling protein N terminal repeat ebA6041 PF00563 EAL domain ebA6041 PF00990 Diguanylate cyclase, GGDEF domain ebA6049 PF04102 SlyX ebA605 PF01212 Beta-eliminating lyase ebA6051 PF00512 His Kinase A (phospho-acceptor) domain ebA6051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA6051 PF00072 Response regulator receiver domain ebA6051 PF09456 RcsC Alpha-Beta-Loop (ABL) ebA6058 PF00563 EAL domain ebA6058 PF00990 Diguanylate cyclase, GGDEF domain ebA6058 PF03707 Bacterial signalling protein N terminal repeat ebA6072 PF04542 Sigma-70 region 2 ebA6072 PF08281 Sigma-70, region 4 ebA6077 PF07995 Glucose / Sorbosone dehydrogenase ebA608 PF01569 PAP2 superfamily ebA6086 PF01609 Transposase DDE domain ebA6086 PF13808 DDE_Tnp_1-associated ebA6092 PF03061 Thioesterase superfamily ebA6096 PF00593 TonB dependent receptor ebA6096 PF07715 TonB-dependent Receptor Plug Domain ebA6098 PF02080 TrkA-C domain ebA6098 PF00999 Sodium/hydrogen exchanger family ebA6098 PF03471 Transporter associated domain ebA6101 PF00753 Metallo-beta-lactamase superfamily ebA6102 PF12848 ABC transporter ebA6102 PF00005 ABC transporter ebA6104 PF00990 Diguanylate cyclase, GGDEF domain ebA6104 PF13426 PAS domain ebA6104 PF00563 EAL domain ebA6110 PF00175 Oxidoreductase NAD-binding domain ebA6110 PF00970 Oxidoreductase FAD-binding domain ebA6111 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA6111 PF03466 LysR substrate binding domain ebA6116 PF03552 Cellulose synthase ebA6116 PF00535 Glycosyl transferase family 2 ebA6116 PF07238 PilZ domain ebA6124 PF02347 Glycine cleavage system P-protein ebA6126 PF01571 Aminomethyltransferase folate-binding domain ebA6126 PF08669 Glycine cleavage T-protein C-terminal barrel domain ebA6127 PF02811 PHP domain ebA6128 PF01300 Telomere recombination ebA6130 PF02163 Peptidase family M50 ebA6131 PF00579 tRNA synthetases class I (W and Y) ebA6132 PF02616 Segregation and condensation protein ScpA ebA6134 PF04079 Segregation and condensation complex subunit ScpB ebA6135 PF00849 RNA pseudouridylate synthase ebA6135 PF01479 S4 domain ebA6138 PF01464 Transglycosylase SLT domain ebA6138 PF10145 Phage-related minor tail protein ebA6138 PF01551 Peptidase family M23 ebA6142 PF02769 AIR synthase related protein, C-terminal domain ebA6142 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ebA6142 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ebA6149 PF00593 TonB dependent receptor ebA6149 PF07715 TonB-dependent Receptor Plug Domain ebA6156 PF03061 Thioesterase superfamily ebA6159 PF06418 CTP synthase N-terminus ebA6159 PF00117 Glutamine amidotransferase class-I ebA6160 PF00793 DAHP synthetase I family ebA6162 PF03952 Enolase, N-terminal domain ebA6162 PF00113 Enolase, C-terminal TIM barrel domain ebA6165 PF00877 NlpC/P60 family ebA6171 PF00132 Bacterial transferase hexapeptide (six repeats) ebA6174 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ebA6176 PF01384 Phosphate transporter family ebA6179 PF01227 GTP cyclohydrolase I ebA618 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ebA6181 PF01636 Phosphotransferase enzyme family ebA6183 PF07152 YaeQ protein ebA6189 PF03471 Transporter associated domain ebA6189 PF01595 Cyclin M transmembrane N-terminal domain ebA6189 PF00571 CBS domain ebA6190 PF00171 Aldehyde dehydrogenase family ebA6197 PF01926 50S ribosome-binding GTPase ebA62 PF01327 Polypeptide deformylase ebA6206 PF00528 Binding-protein-dependent transport system inner membrane component ebA6207 PF00528 Binding-protein-dependent transport system inner membrane component ebA6208 PF00005 ABC transporter ebA6208 PF17850 CysA C-terminal regulatory domain ebA6208 PF12857 TOBE-like domain ebA621 PF00034 Cytochrome c ebA6215 PF00563 EAL domain ebA6215 PF03707 Bacterial signalling protein N terminal repeat ebA6215 PF13188 PAS domain ebA6215 PF00990 Diguanylate cyclase, GGDEF domain ebA6216 PF12729 Four helix bundle sensory module for signal transduction ebA6216 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ebA6216 PF00672 HAMP domain ebA6230 PF00005 ABC transporter ebA6231 PF01061 ABC-2 type transporter ebA6232 PF11897 Protein of unknown function (DUF3417) ebA6232 PF00343 Carbohydrate phosphorylase ebA6233 PF08521 Two-component sensor kinase N-terminal ebA6233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA6233 PF00512 His Kinase A (phospho-acceptor) domain ebA6235 PF00072 Response regulator receiver domain ebA6235 PF00486 Transcriptional regulatory protein, C terminal ebA6240 PF00106 short chain dehydrogenase ebA6242 PF00501 AMP-binding enzyme ebA6242 PF13193 AMP-binding enzyme C-terminal domain ebA6247 PF00440 Bacterial regulatory proteins, tetR family ebA6248 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ebA6253 PF00005 ABC transporter ebA6266 PF12679 ABC-2 family transporter protein ebA6267 PF00005 ABC transporter ebA6268 PF05048 Periplasmic copper-binding protein (NosD) ebA6270 PF04205 FMN-binding domain ebA6270 PF12801 4Fe-4S binding domain ebA6272 PF18793 Nitrous oxide reductase propeller repeat 2 ebA6272 PF18764 Nitrous oxide reductase propeller repeat ebA6272 PF13473 Cupredoxin-like domain ebA6278 PF00072 Response regulator receiver domain ebA6278 PF00196 Bacterial regulatory proteins, luxR family ebA6280 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ebA6280 PF07730 Histidine kinase ebA6280 PF00672 HAMP domain ebA6280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA6282 PF02665 Nitrate reductase gamma subunit ebA6283 PF02613 Nitrate reductase delta subunit ebA6285 PF14711 Respiratory nitrate reductase beta C-terminal ebA6285 PF13247 4Fe-4S dicluster domain ebA6286 PF00384 Molybdopterin oxidoreductase ebA6286 PF01568 Molydopterin dinucleotide binding domain ebA6286 PF14710 Respiratory nitrate reductase alpha N-terminal ebA6288 PF07690 Major Facilitator Superfamily ebA6289 PF07690 Major Facilitator Superfamily ebA6307 PF01053 Cys/Met metabolism PLP-dependent enzyme ebA6309 PF00425 chorismate binding enzyme ebA6309 PF04715 Anthranilate synthase component I, N terminal region ebA6313 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ebA6316 PF01554 MatE ebA6319 PF00589 Phage integrase family ebA6322 PF00563 EAL domain ebA6322 PF00990 Diguanylate cyclase, GGDEF domain ebA6322 PF03707 Bacterial signalling protein N terminal repeat ebA6328 PF00563 EAL domain ebA6328 PF03707 Bacterial signalling protein N terminal repeat ebA6328 PF00990 Diguanylate cyclase, GGDEF domain ebA633 PF01695 IstB-like ATP binding protein ebA6332 PF07929 Plasmid pRiA4b ORF-3-like protein ebA6339 PF00145 C-5 cytosine-specific DNA methylase ebA634 PF00665 Integrase core domain ebA6342 PF00665 Integrase core domain ebA6343 PF02796 Helix-turn-helix domain of resolvase ebA6343 PF00665 Integrase core domain ebA6345 PF01695 IstB-like ATP binding protein ebA6347 PF01695 IstB-like ATP binding protein ebA6357 PF08676 MutL C terminal dimerisation domain ebA6357 PF01119 DNA mismatch repair protein, C-terminal domain ebA6367 PF00266 Aminotransferase class-V ebA637 PF13840 ACT domain ebA637 PF01842 ACT domain ebA637 PF00696 Amino acid kinase family ebA6371 PF01161 Phosphatidylethanolamine-binding protein ebA6375 PF01048 Phosphorylase superfamily ebA6378 PF00483 Nucleotidyl transferase ebA6380 PF12826 Helix-hairpin-helix motif ebA6380 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ebA6380 PF03120 NAD-dependent DNA ligase OB-fold domain ebA6380 PF01653 NAD-dependent DNA ligase adenylation domain ebA6380 PF00533 BRCA1 C Terminus (BRCT) domain ebA6382 PF04354 ZipA, C-terminal FtsZ-binding domain ebA6384 PF02463 RecF/RecN/SMC N terminal domain ebA6385 PF00155 Aminotransferase class I and II ebA6386 PF00132 Bacterial transferase hexapeptide (six repeats) ebA6386 PF14602 Hexapeptide repeat of succinyl-transferase ebA6386 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ebA6387 PF00437 Type II/IV secretion system protein ebA6388 PF01546 Peptidase family M20/M25/M40 ebA6388 PF07687 Peptidase dimerisation domain ebA6390 PF05175 Methyltransferase small domain ebA6392 PF00072 Response regulator receiver domain ebA6393 PF00255 Glutathione peroxidase ebA6395 PF04384 Iron-sulphur cluster assembly ebA6396 PF00012 Hsp70 protein ebA6397 PF07743 HSCB C-terminal oligomerisation domain ebA64 PF02580 D-Tyr-tRNA(Tyr) deacylase ebA6400 PF01592 NifU-like N terminal domain ebA6401 PF00266 Aminotransferase class-V ebA6402 PF00266 Aminotransferase class-V ebA6404 PF02082 Transcriptional regulator ebA6405 PF00132 Bacterial transferase hexapeptide (six repeats) ebA6408 PF00588 SpoU rRNA Methylase family ebA6410 PF00459 Inositol monophosphatase family ebA642 PF01242 6-pyruvoyl tetrahydropterin synthase ebA6422 PF00977 Histidine biosynthesis protein ebA6426 PF01568 Molydopterin dinucleotide binding domain ebA6426 PF10518 TAT (twin-arginine translocation) pathway signal sequence ebA6426 PF00384 Molybdopterin oxidoreductase ebA6426 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ebA6435 PF13247 4Fe-4S dicluster domain ebA6439 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA6439 PF00989 PAS fold ebA6439 PF00512 His Kinase A (phospho-acceptor) domain ebA6441 PF00158 Sigma-54 interaction domain ebA6441 PF00072 Response regulator receiver domain ebA6441 PF02954 Bacterial regulatory protein, Fis family ebA645 PF12794 Mechanosensitive ion channel inner membrane domain 1 ebA645 PF12795 Mechanosensitive ion channel porin domain ebA645 PF00924 Mechanosensitive ion channel ebA6450 PF00156 Phosphoribosyl transferase domain ebA6450 PF05139 Erythromycin esterase ebA6453 PF05192 MutS domain III ebA6453 PF01624 MutS domain I ebA6453 PF00488 MutS domain V ebA6453 PF05188 MutS domain II ebA6453 PF05190 MutS family domain IV ebA6456 PF00929 Exonuclease ebA6458 PF00075 RNase H ebA6459 PF08241 Methyltransferase domain ebA6465 PF01464 Transglycosylase SLT domain ebA6465 PF01476 LysM domain ebA6466 PF00005 ABC transporter ebA6466 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ebA6468 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ebA6469 PF00578 AhpC/TSA family ebA647 PF13091 PLD-like domain ebA6472 PF03707 Bacterial signalling protein N terminal repeat ebA6472 PF00990 Diguanylate cyclase, GGDEF domain ebA6472 PF00563 EAL domain ebA6478 PF00512 His Kinase A (phospho-acceptor) domain ebA6478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA6481 PF18073 Rubredoxin metal binding domain ebA6482 PF03466 LysR substrate binding domain ebA6482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA6485 PF07690 Major Facilitator Superfamily ebA6487 PF03167 Uracil DNA glycosylase superfamily ebA6491 PF00583 Acetyltransferase (GNAT) family ebA6494 PF00814 Glycoprotease family ebA6497 PF00486 Transcriptional regulatory protein, C terminal ebA6497 PF00072 Response regulator receiver domain ebA6498 PF00672 HAMP domain ebA6498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA6498 PF00512 His Kinase A (phospho-acceptor) domain ebA6499 PF03795 YCII-related domain ebA650 PF01029 NusB family ebA650 PF01189 16S rRNA methyltransferase RsmB/F ebA6501 PF04279 Intracellular septation protein A ebA6506 PF12806 Acetyl-CoA dehydrogenase C-terminal like ebA6506 PF02770 Acyl-CoA dehydrogenase, middle domain ebA6506 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA6506 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA6510 PF00766 Electron transfer flavoprotein FAD-binding domain ebA6510 PF01012 Electron transfer flavoprotein domain ebA6511 PF01012 Electron transfer flavoprotein domain ebA6513 PF00440 Bacterial regulatory proteins, tetR family ebA6513 PF08361 MAATS-type transcriptional repressor, C-terminal region ebA6514 PF01026 TatD related DNase ebA6516 PF00378 Enoyl-CoA hydratase/isomerase ebA6518 PF00501 AMP-binding enzyme ebA6518 PF13193 AMP-binding enzyme C-terminal domain ebA6523 PF00005 ABC transporter ebA6524 PF02405 Permease MlaE ebA6525 PF02541 Ppx/GppA phosphatase family ebA6526 PF17941 Polyphosphate kinase C-terminal domain 1 ebA6526 PF13089 Polyphosphate kinase N-terminal domain ebA6526 PF13090 Polyphosphate kinase C-terminal domain 2 ebA6526 PF02503 Polyphosphate kinase middle domain ebA6528 PF04607 Region found in RelA / SpoT proteins ebA6528 PF02824 TGS domain ebA6528 PF13291 ACT domain ebA6530 PF06167 Glucose-regulated metallo-peptidase M90 ebA6536 PF00043 Glutathione S-transferase, C-terminal domain ebA6536 PF13417 Glutathione S-transferase, N-terminal domain ebA6539 PF02834 LigT like Phosphoesterase ebA6542 PF02542 YgbB family ebA6543 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ebA6545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ebA6545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ebA6545 PF00205 Thiamine pyrophosphate enzyme, central domain ebA6546 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ebA6546 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ebA6549 PF01875 Memo-like protein ebA655 PF00551 Formyl transferase ebA6551 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ebA6551 PF01871 AMMECR1 ebA6555 PF17757 UvrB interaction domain ebA6555 PF00271 Helicase conserved C-terminal domain ebA6555 PF00270 DEAD/DEAH box helicase ebA6555 PF02559 CarD-like/TRCF domain ebA6555 PF03461 TRCF domain ebA6577 PF00155 Aminotransferase class I and II ebA658 PF08676 MutL C terminal dimerisation domain ebA658 PF01119 DNA mismatch repair protein, C-terminal domain ebA6581 PF13175 AAA ATPase domain ebA6583 PF13361 UvrD-like helicase C-terminal domain ebA6583 PF00580 UvrD/REP helicase N-terminal domain ebA6589 PF07728 AAA domain (dynein-related subfamily) ebA6589 PF12102 Domain of unknown function (DUF3578) ebA6594 PF01464 Transglycosylase SLT domain ebA6607 PF03743 Bacterial conjugation TrbI-like protein ebA661 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA661 PF00204 DNA gyrase B ebA661 PF01751 Toprim domain ebA661 PF00986 DNA gyrase B subunit, carboxyl terminus ebA6614 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer ebA6622 PF06834 TraU protein ebA6624 PF09673 Type-F conjugative transfer system pilin assembly protein ebA6625 PF06986 Type-1V conjugative transfer system mating pair stabilisation ebA664 PF00521 DNA gyrase/topoisomerase IV, subunit A ebA6644 PF13356 Arm DNA-binding domain ebA6644 PF00589 Phage integrase family ebA6645 PF00958 GMP synthase C terminal domain ebA6645 PF02540 NAD synthase ebA6645 PF00117 Glutamine amidotransferase class-I ebA6647 PF00571 CBS domain ebA6647 PF00478 IMP dehydrogenase / GMP reductase domain ebA6652 PF03658 RnfH family Ubiquitin ebA6653 PF03364 Polyketide cyclase / dehydrase and lipid transport ebA6654 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ebA6655 PF01068 ATP dependent DNA ligase domain ebA6655 PF13298 DNA polymerase Ligase (LigD) ebA6655 PF04679 ATP dependent DNA ligase C terminal region ebA6658 PF12911 N-terminal TM domain of oligopeptide transport permease C ebA6658 PF00528 Binding-protein-dependent transport system inner membrane component ebA666 PF00271 Helicase conserved C-terminal domain ebA666 PF00176 SNF2 family N-terminal domain ebA6661 PF00528 Binding-protein-dependent transport system inner membrane component ebA6662 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ebA6665 PF05698 Bacterial trigger factor protein (TF) C-terminus ebA6667 PF00004 ATPase family associated with various cellular activities (AAA) ebA6667 PF07724 AAA domain (Cdc48 subfamily) ebA6667 PF17871 AAA lid domain ebA6667 PF02861 Clp amino terminal domain, pathogenicity island component ebA6667 PF10431 C-terminal, D2-small domain, of ClpB protein ebA6671 PF02391 MoaE protein ebA6672 PF02597 ThiS family ebA6673 PF00994 Probable molybdopterin binding domain ebA6673 PF03454 MoeA C-terminal region (domain IV) ebA6673 PF03453 MoeA N-terminal region (domain I and II) ebA6674 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ebA6678 PF13307 Helicase C-terminal domain ebA6678 PF04851 Type III restriction enzyme, res subunit ebA6680 PF08241 Methyltransferase domain ebA6682 PF03969 AFG1-like ATPase ebA6683 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ebA6683 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA6684 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ebA6684 PF02817 e3 binding domain ebA6684 PF00364 Biotin-requiring enzyme ebA6685 PF00676 Dehydrogenase E1 component ebA6685 PF16870 2-oxoglutarate dehydrogenase C-terminal ebA6685 PF16078 2-oxoglutarate dehydrogenase N-terminus ebA6685 PF02779 Transketolase, pyrimidine binding domain ebA6687 PF00285 Citrate synthase, C-terminal domain ebA6689 PF13085 2Fe-2S iron-sulfur cluster binding domain ebA669 PF02661 Fic/DOC family ebA669 PF13784 Fic/DOC family N-terminal ebA6690 PF00890 FAD binding domain ebA6690 PF02910 Fumarate reductase flavoprotein C-term ebA6693 PF07702 UTRA domain ebA6693 PF00392 Bacterial regulatory proteins, gntR family ebA6695 PF00056 lactate/malate dehydrogenase, NAD binding domain ebA6695 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ebA6699 PF16701 Adenylate cyclase regulatory domain ebA6699 PF00211 Adenylate and Guanylate cyclase catalytic domain ebA670 PF18273 Type III R-M EcoP15I C-terminal domain ebA670 PF01555 DNA methylase ebA6704 PF00005 ABC transporter ebA6704 PF00664 ABC transporter transmembrane region ebA6707 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ebA6707 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA6709 PF00924 Mechanosensitive ion channel ebA6722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA6722 PF00072 Response regulator receiver domain ebA6722 PF00512 His Kinase A (phospho-acceptor) domain ebA6722 PF08448 PAS fold ebA6722 PF13188 PAS domain ebA6729 PF00486 Transcriptional regulatory protein, C terminal ebA6729 PF00072 Response regulator receiver domain ebA6733 PF13649 Methyltransferase domain ebA6736 PF01565 FAD binding domain ebA6736 PF08031 Berberine and berberine like ebA6743 PF13533 Biotin-lipoyl like ebA6744 PF00005 ABC transporter ebA6747 PF01568 Molydopterin dinucleotide binding domain ebA6747 PF00384 Molybdopterin oxidoreductase ebA6752 PF02627 Carboxymuconolactone decarboxylase family ebA6753 PF02627 Carboxymuconolactone decarboxylase family ebA6755 PF00155 Aminotransferase class I and II ebA6755 PF00392 Bacterial regulatory proteins, gntR family ebA6761 PF00920 Dehydratase family ebA6763 PF02796 Helix-turn-helix domain of resolvase ebA6763 PF00665 Integrase core domain ebA6765 PF01695 IstB-like ATP binding protein ebA6767 PF00067 Cytochrome P450 ebA6770 PF01797 Transposase IS200 like ebA6773 PF00330 Aconitase family (aconitate hydratase) ebA6773 PF00694 Aconitase C-terminal domain ebA6775 PF00970 Oxidoreductase FAD-binding domain ebA6775 PF00042 Globin ebA6775 PF00175 Oxidoreductase NAD-binding domain ebA6781 PF00953 Glycosyl transferase family 4 ebA6795 PF00684 DnaJ central domain ebA6795 PF01556 DnaJ C terminal domain ebA6795 PF00226 DnaJ domain ebA6797 PF13614 AAA domain ebA6799 PF10531 SLBB domain ebA6799 PF02563 Polysaccharide biosynthesis/export protein ebA6806 PF00005 ABC transporter ebA6811 PF01593 Flavin containing amine oxidoreductase ebA6813 PF00005 ABC transporter ebA6814 PF13472 GDSL-like Lipase/Acylhydrolase family ebA6817 PF00586 AIR synthase related protein, N-terminal domain ebA6817 PF02769 AIR synthase related protein, C-terminal domain ebA6818 PF00581 Rhodanese-like domain ebA6824 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA6824 PF00989 PAS fold ebA6824 PF00512 His Kinase A (phospho-acceptor) domain ebA6829 PF13380 CoA binding domain ebA6829 PF00583 Acetyltransferase (GNAT) family ebA6829 PF13607 Succinyl-CoA ligase like flavodoxin domain ebA6834 PF16921 Tex protein YqgF-like domain ebA6834 PF17674 HHH domain ebA6834 PF00575 S1 RNA binding domain ebA6834 PF09371 Tex-like protein N-terminal domain ebA6835 PF01430 Hsp33 protein ebA6837 PF03775 Septum formation inhibitor MinC, C-terminal domain ebA6837 PF05209 Septum formation inhibitor MinC, N-terminal domain ebA6838 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ebA6839 PF03776 Septum formation topological specificity factor MinE ebA6841 PF00152 tRNA synthetases class II (D, K and N) ebA6841 PF01336 OB-fold nucleic acid binding domain ebA6842 PF01266 FAD dependent oxidoreductase ebA6842 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ebA6844 PF07730 Histidine kinase ebA6844 PF17200 Single Cache domain 2 ebA6850 PF00072 Response regulator receiver domain ebA6850 PF00196 Bacterial regulatory proteins, luxR family ebA6855 PF00749 tRNA synthetases class I (E and Q), catalytic domain ebA6861 PF01370 NAD dependent epimerase/dehydratase family ebA6861 PF08338 Domain of unknown function (DUF1731) ebA6868 PF02464 Competence-damaged protein ebA6868 PF00994 Probable molybdopterin binding domain ebA6868 PF18146 Damage-inducible protein CinA KH domain ebA6869 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ebA6869 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ebA6869 PF01842 ACT domain ebA6871 PF01565 FAD binding domain ebA6871 PF08031 Berberine and berberine like ebA6875 PF01402 Ribbon-helix-helix protein, copG family ebA6876 PF00211 Adenylate and Guanylate cyclase catalytic domain ebA6876 PF13191 AAA ATPase domain ebA6882 PF00664 ABC transporter transmembrane region ebA6882 PF00005 ABC transporter ebA6890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA6890 PF00512 His Kinase A (phospho-acceptor) domain ebA690 PF13005 zinc-finger binding domain of transposase IS66 ebA690 PF13007 Transposase C of IS166 homeodomain ebA690 PF13817 IS66 C-terminal element ebA690 PF03050 Transposase IS66 family ebA6902 PF00072 Response regulator receiver domain ebA6902 PF02954 Bacterial regulatory protein, Fis family ebA6902 PF00158 Sigma-54 interaction domain ebA6907 PF13439 Glycosyltransferase Family 4 ebA6907 PF00534 Glycosyl transferases group 1 ebA6912 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ebA6917 PF00534 Glycosyl transferases group 1 ebA6917 PF08323 Starch synthase catalytic domain ebA6918 PF02446 4-alpha-glucanotransferase ebA6920 PF00128 Alpha amylase, catalytic domain ebA6920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ebA6920 PF11941 Domain of unknown function (DUF3459) ebA6921 PF00483 Nucleotidyl transferase ebA6923 PF00128 Alpha amylase, catalytic domain ebA6923 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ebA6926 PF12795 Mechanosensitive ion channel porin domain ebA6926 PF00924 Mechanosensitive ion channel ebA6926 PF12794 Mechanosensitive ion channel inner membrane domain 1 ebA6931 PF04552 Sigma-54, DNA binding domain ebA6931 PF04963 Sigma-54 factor, core binding domain ebA6931 PF00309 Sigma-54 factor, Activator interacting domain (AID) ebA6934 PF13579 Glycosyl transferase 4-like domain ebA6934 PF00534 Glycosyl transferases group 1 ebA6940 PF01569 PAP2 superfamily ebA6942 PF00534 Glycosyl transferases group 1 ebA6942 PF13439 Glycosyltransferase Family 4 ebA6943 PF00210 Ferritin-like domain ebA6946 PF13091 PLD-like domain ebA6958 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA6959 PF07043 Protein of unknown function (DUF1328) ebA6963 PF01594 AI-2E family transporter ebA6964 PF13091 PLD-like domain ebA6964 PF13396 Phospholipase_D-nuclease N-terminal ebA6968 PF04972 BON domain ebA697 PF01618 MotA/TolQ/ExbB proton channel family ebA6974 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ebA6974 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ebA698 PF00448 SRP54-type protein, GTPase domain ebA6999 PF09411 Lipid A 3-O-deacylase (PagL) ebA70 PF01695 IstB-like ATP binding protein ebA7001 PF16657 Maltogenic Amylase, C-terminal domain ebA7001 PF00128 Alpha amylase, catalytic domain ebA7002 PF11896 Domain of unknown function (DUF3416) ebA7002 PF00128 Alpha amylase, catalytic domain ebA7003 PF00128 Alpha amylase, catalytic domain ebA7003 PF02806 Alpha amylase, C-terminal all-beta domain ebA7003 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ebA7008 PF10017 Histidine-specific methyltransferase, SAM-dependent ebA702 PF00771 FHIPEP family ebA7030 PF01266 FAD dependent oxidoreductase ebA7034 PF02403 Seryl-tRNA synthetase N-terminal domain ebA7034 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ebA7036 PF00004 ATPase family associated with various cellular activities (AAA) ebA7036 PF16193 AAA C-terminal domain ebA7036 PF12002 MgsA AAA+ ATPase C terminal ebA7039 PF03548 Outer membrane lipoprotein carrier protein LolA ebA7041 PF09397 Ftsk gamma domain ebA7041 PF01580 FtsK/SpoIIIE family ebA7041 PF17854 FtsK alpha domain ebA7041 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ebA7042 PF07992 Pyridine nucleotide-disulphide oxidoreductase ebA7043 PF00027 Cyclic nucleotide-binding domain ebA7043 PF13545 Crp-like helix-turn-helix domain ebA7046 PF01713 Smr domain ebA7048 PF00543 Nitrogen regulatory protein P-II ebA7049 PF00795 Carbon-nitrogen hydrolase ebA7049 PF02540 NAD synthase ebA705 PF01312 FlhB HrpN YscU SpaS Family ebA7053 PF00719 Inorganic pyrophosphatase ebA7067 PF01522 Polysaccharide deacetylase ebA7069 PF05175 Methyltransferase small domain ebA7069 PF08468 Methyltransferase small domain N-terminal ebA7072 PF00109 Beta-ketoacyl synthase, N-terminal domain ebA7072 PF02801 Beta-ketoacyl synthase, C-terminal domain ebA7092 PF01381 Helix-turn-helix ebA7101 PF00873 AcrB/AcrD/AcrF family ebA7103 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ebA7104 PF00586 AIR synthase related protein, N-terminal domain ebA7104 PF02769 AIR synthase related protein, C-terminal domain ebA7105 PF01594 AI-2E family transporter ebA7107 PF08299 Bacterial dnaA protein helix-turn-helix ebA7107 PF00308 Bacterial dnaA protein ebA7112 PF01743 Poly A polymerase head domain ebA7112 PF12626 Polymerase A arginine-rich C-terminus ebA7112 PF12627 Probable RNA and SrmB- binding site of polymerase A ebA7113 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ebA7118 PF01712 Deoxynucleoside kinase ebA7119 PF02548 Ketopantoate hydroxymethyltransferase ebA7120 PF02569 Pantoate-beta-alanine ligase ebA7121 PF00571 CBS domain ebA7121 PF00478 IMP dehydrogenase / GMP reductase domain ebA7122 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ebA7122 PF11940 Domain of unknown function (DUF3458) Ig-like fold ebA7122 PF01433 Peptidase family M1 domain ebA713 PF00849 RNA pseudouridylate synthase ebA7130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ebA7130 PF00205 Thiamine pyrophosphate enzyme, central domain ebA7130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ebA7132 PF10369 Small subunit of acetolactate synthase ebA7134 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ebA7134 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ebA7135 PF02666 Phosphatidylserine decarboxylase ebA7137 PF01066 CDP-alcohol phosphatidyltransferase ebA7143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA7143 PF08918 PhoQ Sensor ebA7146 PF00072 Response regulator receiver domain ebA7146 PF00486 Transcriptional regulatory protein, C terminal ebA7148 PF09086 Domain of unknown function (DUF1924) ebA715 PF13977 BetI-type transcriptional repressor, C-terminal ebA715 PF00440 Bacterial regulatory proteins, tetR family ebA7152 PF00111 2Fe-2S iron-sulfur cluster binding domain ebA7152 PF00970 Oxidoreductase FAD-binding domain ebA7152 PF00175 Oxidoreductase NAD-binding domain ebA7154 PF00682 HMGL-like ebA7154 PF08502 LeuA allosteric (dimerisation) domain ebA7157 PF03358 NADPH-dependent FMN reductase ebA7158 PF03631 Virulence factor BrkB ebA7167 PF01782 RimM N-terminal domain ebA7167 PF05239 PRC-barrel domain ebA7168 PF01746 tRNA (Guanine-1)-methyltransferase ebA7169 PF01245 Ribosomal protein L19 ebA7173 PF03739 Lipopolysaccharide export system permease LptF/LptG ebA7174 PF02789 Cytosol aminopeptidase family, N-terminal domain ebA7174 PF00883 Cytosol aminopeptidase family, catalytic domain ebA7180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ebA7180 PF00529 HlyD membrane-fusion protein of T1SS ebA7181 PF00005 ABC transporter ebA7181 PF00664 ABC transporter transmembrane region ebA7186 PF08264 Anticodon-binding domain of tRNA ebA7186 PF00133 tRNA synthetases class I (I, L, M and V) ebA7186 PF10458 Valyl tRNA synthetase tRNA binding arm ebA7188 PF01435 Peptidase family M48 ebA7189 PF01967 MoaC family ebA7191 PF00730 HhH-GPD superfamily base excision DNA repair protein ebA7193 PF02805 Metal binding domain of Ada ebA7193 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ebA7193 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ebA7193 PF12833 Helix-turn-helix domain ebA7196 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase ebA72 PF00665 Integrase core domain ebA720 PF00378 Enoyl-CoA hydratase/isomerase ebA7202 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ebA7202 PF01348 Type II intron maturase ebA7204 PF13808 DDE_Tnp_1-associated ebA7204 PF01609 Transposase DDE domain ebA7217 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ebA722 PF00378 Enoyl-CoA hydratase/isomerase ebA7220 PF16177 Acetyl-coenzyme A synthetase N-terminus ebA7220 PF13193 AMP-binding enzyme C-terminal domain ebA7220 PF00501 AMP-binding enzyme ebA7223 PF08240 Alcohol dehydrogenase GroES-like domain ebA7223 PF00107 Zinc-binding dehydrogenase ebA7261 PF00574 Clp protease ebA7267 PF00182 Chitinase class I ebA727 PF00501 AMP-binding enzyme ebA727 PF13193 AMP-binding enzyme C-terminal domain ebA732 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ebA736 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ebA736 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ebA736 PF02770 Acyl-CoA dehydrogenase, middle domain ebA738 PF00106 short chain dehydrogenase ebA742 PF01869 BadF/BadG/BcrA/BcrD ATPase family ebA744 PF01869 BadF/BadG/BcrA/BcrD ATPase family ebA746 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component ebA748 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component ebA763 PF01695 IstB-like ATP binding protein ebA765 PF00665 Integrase core domain ebA765 PF02796 Helix-turn-helix domain of resolvase ebA771 PF05958 tRNA (Uracil-5-)-methyltransferase ebA773 PF06804 NlpB/DapX lipoprotein ebA774 PF00701 Dihydrodipicolinate synthetase family ebA775 PF00850 Histone deacetylase domain ebA776 PF13406 Transglycosylase SLT domain ebA778 PF04539 Sigma-70 region 3 ebA778 PF04542 Sigma-70 region 2 ebA778 PF00140 Sigma-70 factor, region 1.2 ebA778 PF04545 Sigma-70, region 4 ebA779 PF01551 Peptidase family M23 ebA779 PF01476 LysM domain ebA78 PF13808 DDE_Tnp_1-associated ebA78 PF01609 Transposase DDE domain ebA782 PF01975 Survival protein SurE ebA784 PF17151 Periplasmic sensor domain ebA784 PF00990 Diguanylate cyclase, GGDEF domain ebA787 PF00665 Integrase core domain ebA788 PF01695 IstB-like ATP binding protein ebA790 PF01739 CheR methyltransferase, SAM binding domain ebA790 PF03705 CheR methyltransferase, all-alpha domain ebA791 PF00512 His Kinase A (phospho-acceptor) domain ebA791 PF00072 Response regulator receiver domain ebA791 PF01627 Hpt domain ebA791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA793 PF03707 Bacterial signalling protein N terminal repeat ebA793 PF00563 EAL domain ebA793 PF00990 Diguanylate cyclase, GGDEF domain ebA811 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ebA811 PF03466 LysR substrate binding domain ebA816 PF01925 Sulfite exporter TauE/SafE ebA819 PF01274 Malate synthase ebA825 PF00009 Elongation factor Tu GTP binding domain ebA825 PF14492 Elongation Factor G, domain II ebA825 PF03144 Elongation factor Tu domain 2 ebA825 PF00679 Elongation factor G C-terminus ebA825 PF03764 Elongation factor G, domain IV ebA829 PF00180 Isocitrate/isopropylmalate dehydrogenase ebA832 PF03971 Monomeric isocitrate dehydrogenase ebA833 PF05116 Sucrose-6F-phosphate phosphohydrolase ebA833 PF00982 Glycosyltransferase family 20 ebA835 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ebA836 PF13344 Haloacid dehalogenase-like hydrolase ebA836 PF00293 NUDIX domain ebA837 PF00692 dUTPase ebA838 PF02441 Flavoprotein ebA838 PF04127 DNA / pantothenate metabolism flavoprotein ebA84 PF13808 DDE_Tnp_1-associated ebA84 PF01609 Transposase DDE domain ebA840 PF04002 RadC-like JAB domain ebA843 PF01018 GTP1/OBG ebA843 PF01926 50S ribosome-binding GTPase ebA844 PF01472 PUA domain ebA844 PF00696 Amino acid kinase family ebA855 PF01894 Uncharacterised protein family UPF0047 ebA859 PF03050 Transposase IS66 family ebA859 PF13007 Transposase C of IS166 homeodomain ebA859 PF13005 zinc-finger binding domain of transposase IS66 ebA859 PF13817 IS66 C-terminal element ebA864 PF08448 PAS fold ebA864 PF00990 Diguanylate cyclase, GGDEF domain ebA866 PF00216 Bacterial DNA-binding protein ebA867 PF03484 tRNA synthetase B5 domain ebA867 PF01588 Putative tRNA binding domain ebA867 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ebA867 PF03483 B3/4 domain ebA867 PF03147 Ferredoxin-fold anticodon binding domain ebA868 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ebA868 PF01409 tRNA synthetases class II core domain (F) ebA870 PF00707 Translation initiation factor IF-3, C-terminal domain ebA870 PF05198 Translation initiation factor IF-3, N-terminal domain ebA871 PF03129 Anticodon binding domain ebA871 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ebA871 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ebA871 PF02824 TGS domain ebA872 PF01625 Peptide methionine sulfoxide reductase ebA875 PF01641 SelR domain ebA877 PF06463 Molybdenum Cofactor Synthesis C ebA877 PF04055 Radical SAM superfamily ebA878 PF17805 AsnC-like ligand binding domain ebA880 PF17805 AsnC-like ligand binding domain ebA880 PF13404 AsnC-type helix-turn-helix domain ebA881 PF17805 AsnC-like ligand binding domain ebA885 PF10414 Sirohaem synthase dimerisation region ebA885 PF14824 Sirohaem biosynthesis protein central ebA885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ebA888 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ebA896 PF00291 Pyridoxal-phosphate dependent enzyme ebA899 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ebA899 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ebA899 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ebA900 PF18073 Rubredoxin metal binding domain ebA902 PF00216 Bacterial DNA-binding protein ebA903 PF00575 S1 RNA binding domain ebA904 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ebA905 PF01842 ACT domain ebA905 PF02153 Prephenate dehydrogenase ebA906 PF01817 Chorismate mutase type II ebA906 PF00800 Prephenate dehydratase ebA906 PF01842 ACT domain ebA907 PF00266 Aminotransferase class-V ebA909 PF03989 DNA gyrase C-terminal domain, beta-propeller ebA909 PF00521 DNA gyrase/topoisomerase IV, subunit A ebA911 PF01979 Amidohydrolase family ebA913 PF00691 OmpA family ebA931 PF01479 S4 domain ebA931 PF00579 tRNA synthetases class I (W and Y) ebA932 PF01476 LysM domain ebA932 PF08525 Opacity-associated protein A N-terminal motif ebA932 PF01551 Peptidase family M23 ebA935 PF02774 Semialdehyde dehydrogenase, dimerisation domain ebA935 PF01118 Semialdehyde dehydrogenase, NAD binding domain ebA937 PF00380 Ribosomal protein S9/S16 ebA938 PF00572 Ribosomal protein L13 ebA942 PF03232 Ubiquinone biosynthesis protein COQ7 ebA950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ebA950 PF03129 Anticodon binding domain ebA950 PF04073 Aminoacyl-tRNA editing domain ebA951 PF00293 NUDIX domain ebA955 PF01464 Transglycosylase SLT domain ebA955 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ebA960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA960 PF00512 His Kinase A (phospho-acceptor) domain ebA966 PF00072 Response regulator receiver domain ebA966 PF00158 Sigma-54 interaction domain ebA969 PF01523 Putative modulator of DNA gyrase ebA970 PF00795 Carbon-nitrogen hydrolase ebA977 PF03710 Glutamate-ammonia ligase adenylyltransferase ebA977 PF08335 GlnD PII-uridylyltransferase ebA99 PF01609 Transposase DDE domain ebA99 PF13808 DDE_Tnp_1-associated ebA993 PF01063 Amino-transferase class IV ebA996 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ebA996 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ebA996 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ebA996 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ebA999 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ebA999 PF00512 His Kinase A (phospho-acceptor) domain ebB103 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system ebB108 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ebB113 PF03100 CcmE ebB115 PF04341 Protein of unknown function, DUF485 ebB116 PF00216 Bacterial DNA-binding protein ebB123 PF16320 Ribosomal protein L7/L12 dimerisation domain ebB123 PF00542 Ribosomal protein L7/L12 C-terminal domain ebB124 PF00338 Ribosomal protein S10p/S20e ebB125 PF00276 Ribosomal protein L23 ebB126 PF00203 Ribosomal protein S19 ebB127 PF00238 Ribosomal protein L14p/L23e ebB128 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ebB129 PF00410 Ribosomal protein S8 ebB13 PF13340 Putative transposase of IS4/5 family (DUF4096) ebB130 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ebB131 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ebB132 PF00416 Ribosomal protein S13/S18 ebB133 PF01196 Ribosomal protein L17 ebB136 PF00114 Pilin (bacterial filament) ebB136 PF07963 Prokaryotic N-terminal methylation motif ebB14 PF01609 Transposase DDE domain ebB142 PF01084 Ribosomal protein S18 ebB143 PF08274 PhnA Zinc-Ribbon ebB143 PF03831 PhnA domain ebB144 PF01467 Cytidylyltransferase-like ebB145 PF00550 Phosphopantetheine attachment site ebB146 PF00545 ribonuclease ebB148 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ebB15 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ebB150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ebB153 PF02627 Carboxymuconolactone decarboxylase family ebB154 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ebB155 PF00037 4Fe-4S binding domain ebB155 PF11953 Domain of unknown function (DUF3470) ebB157 PF04355 SmpA / OmlA family ebB158 PF07681 DoxX ebB161 PF00085 Thioredoxin ebB162 PF01842 ACT domain ebB163 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ebB164 PF02674 Colicin V production protein ebB166 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV ebB167 PF01475 Ferric uptake regulator family ebB168 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ebB17 PF01850 PIN domain ebB170 PF08334 Type II secretion system (T2SS), protein G ebB170 PF07963 Prokaryotic N-terminal methylation motif ebB173 PF01022 Bacterial regulatory protein, arsR family ebB176 PF02472 Biopolymer transport protein ExbD/TolR ebB177 PF01649 Ribosomal protein S20 ebB180 PF04247 Invasion gene expression up-regulator, SirB ebB181 PF00403 Heavy-metal-associated domain ebB189 PF00589 Phage integrase family ebB189 PF13495 Phage integrase, N-terminal SAM-like domain ebB196 PF01648 4'-phosphopantetheinyl transferase superfamily ebB202 PF01258 Prokaryotic dksA/traR C4-type zinc finger ebB205 PF00816 H-NS histone family ebB206 PF00816 H-NS histone family ebB208 PF00816 H-NS histone family ebB211 PF00816 H-NS histone family ebB213 PF07311 Dodecin ebB214 PF00034 Cytochrome c ebB217 PF01597 Glycine cleavage H-protein ebB22 PF00829 Ribosomal prokaryotic L21 protein ebB223 PF01883 Iron-sulfur cluster assembly protein ebB227 PF03852 DNA mismatch endonuclease Vsr ebB229 PF00111 2Fe-2S iron-sulfur cluster binding domain ebB230 PF01521 Iron-sulphur cluster biosynthesis ebB233 PF01668 SmpB protein ebB237 PF04221 RelB antitoxin ebB238 PF02308 MgtC family ebB247 PF00886 Ribosomal protein S16 ebB25 PF00453 Ribosomal protein L20 ebB253 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT ebB30 PF01521 Iron-sulphur cluster biosynthesis ebB31 PF02566 OsmC-like protein ebB33 PF00588 SpoU rRNA Methylase family ebB35 PF00166 Chaperonin 10 Kd subunit ebB36 PF07963 Prokaryotic N-terminal methylation motif ebB36 PF00114 Pilin (bacterial filament) ebB37 PF00334 Nucleoside diphosphate kinase ebB38 PF02416 mttA/Hcf106 family ebB39 PF01502 Phosphoribosyl-AMP cyclohydrolase ebB40 PF02699 Preprotein translocase subunit ebB42 PF03799 Cell division protein FtsQ ebB42 PF08478 POTRA domain, FtsQ-type ebB43 PF02381 MraZ protein, putative antitoxin-like ebB44 PF07963 Prokaryotic N-terminal methylation motif ebB45 PF08334 Type II secretion system (T2SS), protein G ebB45 PF07963 Prokaryotic N-terminal methylation motif ebB48 PF02581 Thiamine monophosphate synthase ebB49 PF00072 Response regulator receiver domain ebB5 PF01329 Pterin 4 alpha carbinolamine dehydratase ebB50 PF00072 Response regulator receiver domain ebB6 PF00034 Cytochrome c ebB60 PF09957 Bacterial antitoxin of type II TA system, VapB ebB66 PF01042 Endoribonuclease L-PSP ebB67 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ebB68 PF01381 Helix-turn-helix ebB74 PF00216 Bacterial DNA-binding protein ebB82 PF01381 Helix-turn-helix ebB83 PF09411 Lipid A 3-O-deacylase (PagL) ebB84 PF03061 Thioesterase superfamily ebB86 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system ebB88 PF00011 Hsp20/alpha crystallin family ebB89 PF01809 Putative membrane protein insertion efficiency factor ebB9 PF00364 Biotin-requiring enzyme ebB90 PF00825 Ribonuclease P ebB91 PF01327 Polypeptide deformylase ebB95 PF00543 Nitrogen regulatory protein P-II ebB97 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ebC1 PF00253 Ribosomal protein S14p/S29e ebC10 PF00366 Ribosomal protein S17 ebC12 PF00313 'Cold-shock' DNA-binding domain ebC14 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit ebC15 PF03840 Preprotein translocase SecG subunit ebC2 PF01016 Ribosomal L27 protein ebC3 PF00831 Ribosomal L29 protein ebC4 PF00327 Ribosomal protein L30p/L7e ebC5 PF01783 Ribosomal L32p protein family ebC6 PF00471 Ribosomal protein L33 ebC7 PF00468 Ribosomal protein L34 ebC8 PF01632 Ribosomal protein L35 ebC9 PF00444 Ribosomal protein L36 ebD1 PF00027 Cyclic nucleotide-binding domain ebD1 PF13545 Crp-like helix-turn-helix domain ebD103 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ebD108 PF00684 DnaJ central domain ebD108 PF00226 DnaJ domain ebD108 PF01556 DnaJ C terminal domain ebD109 PF04977 Septum formation initiator ebD11 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ebD115 PF01176 Translation initiation factor 1A / IF-1 ebD116 PF01797 Transposase IS200 like ebD118 PF00486 Transcriptional regulatory protein, C terminal ebD118 PF00072 Response regulator receiver domain ebD119 PF02522 Aminoglycoside 3-N-acetyltransferase ebD12 PF00550 Phosphopantetheine attachment site ebD130 PF01850 PIN domain ebD14 PF05973 Phage derived protein Gp49-like (DUF891) ebD15 PF01381 Helix-turn-helix ebD16 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ebD2 PF02416 mttA/Hcf106 family ebD28 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ebD36 PF01850 PIN domain ebD4 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ebD4 PF01568 Molydopterin dinucleotide binding domain ebD4 PF00384 Molybdopterin oxidoreductase ebD41 PF04324 BFD-like [2Fe-2S] binding domain ebD48 PF08681 Protein of unknown function (DUF1778) ebD52 PF01642 Methylmalonyl-CoA mutase ebD52 PF02310 B12 binding domain ebD64 PF12706 Beta-lactamase superfamily domain ebD68 PF00381 PTS HPr component phosphorylation site ebD7 PF00571 CBS domain ebD70 PF04359 Protein of unknown function (DUF493) ebD71 PF02705 K+ potassium transporter ebD72 PF00072 Response regulator receiver domain ebD83 PF02617 ATP-dependent Clp protease adaptor protein ClpS ebD86 PF06865 Pyrimidine/purine nucleoside phosphorylase ebD88 PF07963 Prokaryotic N-terminal methylation motif ebD88 PF00114 Pilin (bacterial filament) ebD89 PF03741 Integral membrane protein TerC family ebD98 PF01609 Transposase DDE domain ebD98 PF13808 DDE_Tnp_1-associated p1B119 PF02899 Phage integrase, N-terminal SAM-like domain p1B119 PF00589 Phage integrase family p1B137 PF08681 Protein of unknown function (DUF1778) p1B143 PF13614 AAA domain p1B145 PF01751 Toprim domain p1B145 PF01131 DNA topoisomerase p1B149 PF06122 Conjugative relaxosome accessory transposon protein p1B160 PF03743 Bacterial conjugation TrbI-like protein p1B164 PF00223 Photosystem I psaA/psaB protein p1B164 PF00691 OmpA family p1B167 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain p1B167 PF00437 Type II/IV secretion system protein p1B175 PF06834 TraU protein p1B176 PF12477 Sex factor F TraW protein N terminal p1B177 PF13098 Thioredoxin-like domain p1B177 PF10411 Disulfide bond isomerase protein N-terminus p1B184 PF01343 Peptidase family S49 p1B193 PF01695 IstB-like ATP binding protein p1B195 PF00665 Integrase core domain p1B201 PF00565 Staphylococcal nuclease homologue p1B237 PF04381 Putative exonuclease, RdgC p1B254 PF06271 RDD family p1B257 PF00772 DnaB-like helicase N terminal domain p1B257 PF03796 DnaB-like helicase C terminal domain p1B267 PF01695 IstB-like ATP binding protein p1B269 PF00665 Integrase core domain p1B299 PF01027 Inhibitor of apoptosis-promoting Bax1 p1B301 PF02342 TerD domain p1B306 PF11202 Phosphoribosyl transferase (PRTase) p1B306 PF15608 PELOTA RNA binding domain p1B312 PF02342 TerD domain p1B313 PF01987 Mitochondrial biogenesis AIM24 p1B315 PF02342 TerD domain p1B317 PF02342 TerD domain p1B319 PF04608 Phosphatidylglycerophosphatase A p1B321 PF02342 TerD domain p1B324 PF00092 von Willebrand factor type A domain p1B329 PF03741 Integral membrane protein TerC family p1B330 PF05099 Tellurite resistance protein TerB p1B335 PF05818 Enterobacterial TraT complement resistance protein p1B347 PF07733 Bacterial DNA polymerase III alpha NTPase domain p1B347 PF14480 DNA polymerase III polC-type N-terminus I p1B347 PF11490 DNA polymerase III polC-type N-terminus II p1B347 PF17657 Bacterial DNA polymerase III alpha subunit finger domain p1B347 PF14579 Helix-hairpin-helix motif p1B347 PF02811 PHP domain p1B347 PF00929 Exonuclease p1B362 PF00563 EAL domain p1B362 PF00990 Diguanylate cyclase, GGDEF domain p1B362 PF03707 Bacterial signalling protein N terminal repeat p1B4 PF01695 IstB-like ATP binding protein p1B53 PF00270 DEAD/DEAH box helicase p1B53 PF00271 Helicase conserved C-terminal domain p1B53 PF17191 RecG wedge domain p1B79 PF17762 HTH domain found in ParB protein p1B79 PF02195 ParB-like nuclease domain p2A104 PF02515 CoA-transferase family III p2A109 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase p2A11 PF07992 Pyridine nucleotide-disulphide oxidoreductase p2A11 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region p2A11 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster p2A113 PF02441 Flavoprotein p2A117 PF00267 Gram-negative porin p2A120 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase p2A122 PF00528 Binding-protein-dependent transport system inner membrane component p2A125 PF00005 ABC transporter p2A13 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II p2A13 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase p2A13 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg p2A133 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase p2A138 PF02441 Flavoprotein p2A143 PF00293 NUDIX domain p2A151 PF00665 Integrase core domain p2A151 PF02796 Helix-turn-helix domain of resolvase p2A153 PF01695 IstB-like ATP binding protein p2A16 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain p2A162 PF00816 H-NS histone family p2A173 PF13495 Phage integrase, N-terminal SAM-like domain p2A173 PF00589 Phage integrase family p2A174 PF04986 Putative transposase p2A174 PF14319 Transposase zinc-binding domain p2A176 PF02899 Phage integrase, N-terminal SAM-like domain p2A176 PF00589 Phage integrase family p2A177 PF01695 IstB-like ATP binding protein p2A178 PF00665 Integrase core domain p2A184 PF07508 Recombinase p2A184 PF00239 Resolvase, N terminal domain p2A184 PF13408 Recombinase zinc beta ribbon domain p2A186 PF00665 Integrase core domain p2A189 PF00589 Phage integrase family p2A189 PF02899 Phage integrase, N-terminal SAM-like domain p2A191 PF00589 Phage integrase family p2A192 PF02899 Phage integrase, N-terminal SAM-like domain p2A192 PF00589 Phage integrase family p2A193 PF00589 Phage integrase family p2A194 PF02899 Phage integrase, N-terminal SAM-like domain p2A194 PF00589 Phage integrase family p2A2 PF00890 FAD binding domain p2A20 PF00665 Integrase core domain p2A206 PF03358 NADPH-dependent FMN reductase p2A217 PF00589 Phage integrase family p2A217 PF02899 Phage integrase, N-terminal SAM-like domain p2A219 PF00589 Phage integrase family p2A219 PF02899 Phage integrase, N-terminal SAM-like domain p2A225 PF02899 Phage integrase, N-terminal SAM-like domain p2A225 PF00589 Phage integrase family p2A227 PF02899 Phage integrase, N-terminal SAM-like domain p2A227 PF00589 Phage integrase family p2A228 PF00589 Phage integrase family p2A229 PF02899 Phage integrase, N-terminal SAM-like domain p2A229 PF00589 Phage integrase family p2A230 PF02899 Phage integrase, N-terminal SAM-like domain p2A230 PF00589 Phage integrase family p2A238 PF02796 Helix-turn-helix domain of resolvase p2A238 PF00665 Integrase core domain p2A240 PF01695 IstB-like ATP binding protein p2A243 PF00717 Peptidase S24-like p2A244 PF11798 IMS family HHH motif p2A244 PF13438 Domain of unknown function (DUF4113) p2A244 PF00817 impB/mucB/samB family p2A244 PF11799 impB/mucB/samB family C-terminal domain p2A246 PF06613 KorB C-terminal beta-barrel domain p2A246 PF02195 ParB-like nuclease domain p2A246 PF08535 KorB domain p2A247 PF13614 AAA domain p2A255 PF01695 IstB-like ATP binding protein p2A256 PF00665 Integrase core domain p2A266 PF13333 Integrase core domain p2A266 PF00665 Integrase core domain p2A266 PF13276 HTH-like domain p2A268 PF00589 Phage integrase family p2A268 PF02899 Phage integrase, N-terminal SAM-like domain p2A279 PF13005 zinc-finger binding domain of transposase IS66 p2A279 PF13817 IS66 C-terminal element p2A279 PF13007 Transposase C of IS166 homeodomain p2A279 PF03050 Transposase IS66 family p2A281 PF02796 Helix-turn-helix domain of resolvase p2A281 PF00665 Integrase core domain p2A283 PF01695 IstB-like ATP binding protein p2A292 PF00376 MerR family regulatory protein p2A292 PF13614 AAA domain p2A305 PF00665 Integrase core domain p2A308 PF07508 Recombinase p2A308 PF13408 Recombinase zinc beta ribbon domain p2A308 PF00239 Resolvase, N terminal domain p2A312 PF00665 Integrase core domain p2A315 PF01695 IstB-like ATP binding protein p2A321 PF13360 PQQ-like domain p2A321 PF01011 PQQ enzyme repeat p2A323 PF00890 FAD binding domain p2A325 PF01609 Transposase DDE domain p2A325 PF05598 Transposase domain (DUF772) p2A326 PF05598 Transposase domain (DUF772) p2A326 PF01609 Transposase DDE domain p2A330 PF01042 Endoribonuclease L-PSP p2A334 PF08240 Alcohol dehydrogenase GroES-like domain p2A334 PF00107 Zinc-binding dehydrogenase p2A341 PF00378 Enoyl-CoA hydratase/isomerase p2A347 PF00881 Nitroreductase family p2A347 PF01996 F420-0:Gamma-glutamyl ligase p2A350 PF04055 Radical SAM superfamily p2A358 PF00392 Bacterial regulatory proteins, gntR family p2A358 PF07729 FCD domain p2A367 PF00872 Transposase, Mutator family p2A369 PF01695 IstB-like ATP binding protein p2A371 PF00665 Integrase core domain p2A371 PF02796 Helix-turn-helix domain of resolvase p2A379 PF00248 Aldo/keto reductase family p2A380 PF02770 Acyl-CoA dehydrogenase, middle domain p2A380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain p2A380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain p2A386 PF00501 AMP-binding enzyme p2A386 PF13193 AMP-binding enzyme C-terminal domain p2A389 PF00378 Enoyl-CoA hydratase/isomerase p2A392 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain p2A392 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain p2A394 PF02803 Thiolase, C-terminal domain p2A394 PF00108 Thiolase, N-terminal domain p2A408 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain p2A408 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain p2A409 PF00108 Thiolase, N-terminal domain p2A409 PF02803 Thiolase, C-terminal domain p2A42 PF01420 Type I restriction modification DNA specificity domain p2A45 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) p2A45 PF04851 Type III restriction enzyme, res subunit p2A45 PF00271 Helicase conserved C-terminal domain p2A45 PF08463 EcoEI R protein C-terminal p2A48 PF12161 HsdM N-terminal domain p2A48 PF02384 N-6 DNA Methylase p2A50 PF01420 Type I restriction modification DNA specificity domain p2A60 PF00196 Bacterial regulatory proteins, luxR family p2A7 PF02771 Acyl-CoA dehydrogenase, N-terminal domain p2A7 PF02770 Acyl-CoA dehydrogenase, middle domain p2A7 PF00441 Acyl-CoA dehydrogenase, C-terminal domain p2A9 PF02771 Acyl-CoA dehydrogenase, N-terminal domain p2A9 PF02770 Acyl-CoA dehydrogenase, middle domain p2A9 PF00441 Acyl-CoA dehydrogenase, C-terminal domain p2A96 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component p2B1 PF16509 TrfB plasmid transcriptional repressor p2B11 PF04610 TrbL/VirB6 plasmid conjugal transfer protein p2B15 PF13362 Toprim domain p2B15 PF18818 Metallopeptidase superfamily domain p2B15 PF08401 Domain of unknown function (DUF1738) p2B17 PF01131 DNA topoisomerase p2B17 PF01751 Toprim domain p2B18 PF10502 Signal peptidase, peptidase S26 p2B19 PF02534 Type IV secretory system Conjugative DNA transfer p2B2 PF00437 Type II/IV secretion system protein p2B20 PF18821 Large polyvalent protein-associated domain 7 p2B20 PF03432 Relaxase/Mobilisation nuclease domain p2B23 PF17273 Family of unknown function (DUF5338) p2B24 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain p2B25 PF11657 Transcriptional activator TraM p2B3 PF04956 TrbC/VIRB2 family p2B4 PF03135 CagE, TrbE, VirB family, component of type IV transporter system p2B6 PF03524 Conjugal transfer protein p2B8 PF03743 Bacterial conjugation TrbI-like protein p2D1 PF05101 Type IV secretory pathway, VirB3-like protein p2D2 PF16509 TrfB plasmid transcriptional repressor