locus-tag class description LDL57_00005 PF00308 Bacterial dnaA protein LDL57_00005 PF08299 Bacterial dnaA protein helix-turn-helix LDL57_00005 PF11638 DnaA N-terminal domain LDL57_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LDL57_00010 PF02767 DNA polymerase III beta subunit, central domain LDL57_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LDL57_00015 PF02463 RecF/RecN/SMC N terminal domain LDL57_00020 PF01751 Toprim domain LDL57_00020 PF18053 DNA gyrase B subunit insert domain LDL57_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_00020 PF00204 DNA gyrase B LDL57_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LDL57_00025 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDL57_00025 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDL57_00030 PF02638 Glycosyl hydrolase-like 10 LDL57_00035 PF01380 SIS domain LDL57_00040 PF00132 Bacterial transferase hexapeptide (six repeats) LDL57_00040 PF12804 MobA-like NTP transferase domain LDL57_00045 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LDL57_00045 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LDL57_00050 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDL57_00050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDL57_00055 PF00231 ATP synthase LDL57_00060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDL57_00060 PF00306 ATP synthase alpha/beta chain, C terminal domain LDL57_00060 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDL57_00065 PF00213 ATP synthase delta (OSCP) subunit LDL57_00070 PF00430 ATP synthase B/B' CF(0) LDL57_00075 PF00137 ATP synthase subunit C LDL57_00080 PF00119 ATP synthase A chain LDL57_00090 PF02527 rRNA small subunit methyltransferase G LDL57_00095 PF13932 GidA associated domain LDL57_00095 PF01134 Glucose inhibited division protein A LDL57_00100 PF00258 Flavodoxin LDL57_00105 PF01037 Lrp/AsnC ligand binding domain LDL57_00110 PF03590 Aspartate-ammonia ligase LDL57_00115 PF05762 VWA domain containing CoxE-like protein LDL57_00120 PF07728 AAA domain (dynein-related subfamily) LDL57_00120 PF17868 AAA lid domain LDL57_00120 PF12592 Protein of unknown function (DUF3763) LDL57_00155 PF13193 AMP-binding enzyme C-terminal domain LDL57_00155 PF16177 Acetyl-coenzyme A synthetase N-terminus LDL57_00155 PF00501 AMP-binding enzyme LDL57_00160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LDL57_00160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LDL57_00165 PF00579 tRNA synthetases class I (W and Y) LDL57_00170 PF13419 Haloacid dehalogenase-like hydrolase LDL57_00175 PF00834 Ribulose-phosphate 3 epimerase family LDL57_00180 PF02086 D12 class N6 adenine-specific DNA methyltransferase LDL57_00185 PF05036 Sporulation related domain LDL57_00190 PF01761 3-dehydroquinate synthase LDL57_00195 PF01202 Shikimate kinase LDL57_00200 PF00263 Bacterial type II and III secretion system protein LDL57_00200 PF03958 Bacterial type II/III secretion system short domain LDL57_00220 PF17092 Penicillin-binding protein OB-like domain LDL57_00220 PF00912 Transglycosylase LDL57_00220 PF00905 Penicillin binding protein transpeptidase domain LDL57_00225 PF00293 NUDIX domain LDL57_00230 PF07095 Intracellular growth attenuator protein IgaA LDL57_00235 PF01479 S4 domain LDL57_00240 PF01430 Hsp33 protein LDL57_00245 PF01293 Phosphoenolpyruvate carboxykinase LDL57_00255 PF01384 Phosphate transporter family LDL57_00260 PF10625 Universal stress protein B (UspB) LDL57_00265 PF00582 Universal stress protein family LDL57_00270 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LDL57_00270 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LDL57_00275 PF00529 HlyD membrane-fusion protein of T1SS LDL57_00280 PF00664 ABC transporter transmembrane region LDL57_00280 PF00005 ABC transporter LDL57_00285 PF04151 Bacterial pre-peptidase C-terminal domain LDL57_00285 PF01752 Collagenase LDL57_00285 PF08453 Peptidase family M9 N-terminal LDL57_00290 PF04445 Putative SAM-dependent methyltransferase LDL57_00295 PF01432 Peptidase family M3 LDL57_00315 PF00550 Phosphopantetheine attachment site LDL57_00315 PF00501 AMP-binding enzyme LDL57_00315 PF13193 AMP-binding enzyme C-terminal domain LDL57_00315 PF00668 Condensation domain LDL57_00315 PF00975 Thioesterase domain LDL57_00320 PF00550 Phosphopantetheine attachment site LDL57_00320 PF00668 Condensation domain LDL57_00320 PF00975 Thioesterase domain LDL57_00320 PF00501 AMP-binding enzyme LDL57_00320 PF13193 AMP-binding enzyme C-terminal domain LDL57_00325 PF14765 Polyketide synthase dehydratase LDL57_00325 PF00550 Phosphopantetheine attachment site LDL57_00325 PF02801 Beta-ketoacyl synthase, C-terminal domain LDL57_00325 PF00109 Beta-ketoacyl synthase, N-terminal domain LDL57_00325 PF08659 KR domain LDL57_00325 PF00668 Condensation domain LDL57_00325 PF13193 AMP-binding enzyme C-terminal domain LDL57_00325 PF00501 AMP-binding enzyme LDL57_00325 PF16197 Ketoacyl-synthetase C-terminal extension LDL57_00360 PF01381 Helix-turn-helix LDL57_00365 PF13505 Outer membrane protein beta-barrel domain LDL57_00370 PF00072 Response regulator receiver domain LDL57_00370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_00370 PF00512 His Kinase A (phospho-acceptor) domain LDL57_00370 PF01627 Hpt domain LDL57_00370 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDL57_00375 PF00072 Response regulator receiver domain LDL57_00375 PF00196 Bacterial regulatory proteins, luxR family LDL57_00380 PF07813 LTXXQ motif family protein LDL57_00385 PF00072 Response regulator receiver domain LDL57_00385 PF00486 Transcriptional regulatory protein, C terminal LDL57_00390 PF00672 HAMP domain LDL57_00390 PF16527 Two-component sensor protein CpxA, periplasmic domain LDL57_00390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_00390 PF00512 His Kinase A (phospho-acceptor) domain LDL57_00400 PF00571 CBS domain LDL57_00400 PF01380 SIS domain LDL57_00405 PF03737 Aldolase/RraA LDL57_00405 PF00180 Isocitrate/isopropylmalate dehydrogenase LDL57_00410 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LDL57_00415 PF01370 NAD dependent epimerase/dehydratase family LDL57_00460 PF03275 UDP-galactopyranose mutase LDL57_00465 PF01370 NAD dependent epimerase/dehydratase family LDL57_00470 PF00588 SpoU rRNA Methylase family LDL57_00475 PF00132 Bacterial transferase hexapeptide (six repeats) LDL57_00475 PF06426 Serine acetyltransferase, N-terminal LDL57_00480 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LDL57_00480 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LDL57_00485 PF02556 Preprotein translocase subunit SecB LDL57_00490 PF00581 Rhodanese-like domain LDL57_00495 PF01551 Peptidase family M23 LDL57_00500 PF04748 Divergent polysaccharide deacetylase LDL57_00505 PF01370 NAD dependent epimerase/dehydratase family LDL57_00510 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDL57_00515 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDL57_00525 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LDL57_00530 PF01467 Cytidylyltransferase-like LDL57_00535 PF06827 Zinc finger found in FPG and IleRS LDL57_00535 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LDL57_00535 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LDL57_00540 PF04932 O-Antigen ligase LDL57_00545 PF08437 Glycosyl transferase family 8 C-terminal LDL57_00545 PF01501 Glycosyl transferase family 8 LDL57_00550 PF08437 Glycosyl transferase family 8 C-terminal LDL57_00550 PF01501 Glycosyl transferase family 8 LDL57_00560 PF13439 Glycosyltransferase Family 4 LDL57_00560 PF00534 Glycosyl transferases group 1 LDL57_00565 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LDL57_00570 PF00471 Ribosomal protein L33 LDL57_00575 PF00830 Ribosomal L28 family LDL57_00585 PF04127 DNA / pantothenate metabolism flavoprotein LDL57_00585 PF02441 Flavoprotein LDL57_00590 PF00692 dUTPase LDL57_00595 PF00440 Bacterial regulatory proteins, tetR family LDL57_00600 PF00156 Phosphoribosyl transferase domain LDL57_00605 PF03725 3' exoribonuclease family, domain 2 LDL57_00605 PF01138 3' exoribonuclease family, domain 1 LDL57_00610 PF08340 Domain of unknown function (DUF1732) LDL57_00610 PF03755 YicC-like family, N-terminal region LDL57_00615 PF00196 Bacterial regulatory proteins, luxR family LDL57_00615 PF03472 Autoinducer binding domain LDL57_00620 PF00765 Autoinducer synthase LDL57_00625 PF00365 Phosphofructokinase LDL57_00630 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LDL57_00630 PF01266 FAD dependent oxidoreductase LDL57_00635 PF08220 DeoR-like helix-turn-helix domain LDL57_00635 PF00455 DeoR C terminal sensor domain LDL57_00640 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LDL57_00640 PF01694 Rhomboid family LDL57_00645 PF00581 Rhodanese-like domain LDL57_00650 PF01521 Iron-sulphur cluster biosynthesis LDL57_00650 PF01106 NifU-like domain LDL57_00655 PF00156 Phosphoribosyl transferase domain LDL57_00675 PF00561 alpha/beta hydrolase fold LDL57_00680 PF09012 FeoC like transcriptional regulator LDL57_00690 PF04023 FeoA domain LDL57_00695 PF09371 Tex-like protein N-terminal domain LDL57_00695 PF16921 Tex protein YqgF-like domain LDL57_00695 PF00575 S1 RNA binding domain LDL57_00695 PF17674 HHH domain LDL57_00700 PF03449 Transcription elongation factor, N-terminal LDL57_00700 PF01272 Transcription elongation factor, GreA/GreB, C-term LDL57_00705 PF00072 Response regulator receiver domain LDL57_00705 PF00486 Transcriptional regulatory protein, C terminal LDL57_00710 PF00672 HAMP domain LDL57_00710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_00710 PF00512 His Kinase A (phospho-acceptor) domain LDL57_00715 PF12849 PBP superfamily domain LDL57_00720 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_00725 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_00730 PF00005 ABC transporter LDL57_00735 PF01895 PhoU domain LDL57_00740 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDL57_00745 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_00750 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_00755 PF00860 Permease family LDL57_00760 PF04220 Der GTPase activator (YihI) LDL57_00765 PF06969 HemN C-terminal domain LDL57_00765 PF04055 Radical SAM superfamily LDL57_00770 PF02954 Bacterial regulatory protein, Fis family LDL57_00770 PF00158 Sigma-54 interaction domain LDL57_00770 PF00072 Response regulator receiver domain LDL57_00775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_00775 PF00512 His Kinase A (phospho-acceptor) domain LDL57_00775 PF00989 PAS fold LDL57_00780 PF00120 Glutamine synthetase, catalytic domain LDL57_00780 PF03951 Glutamine synthetase, beta-Grasp domain LDL57_00785 PF07687 Peptidase dimerisation domain LDL57_00785 PF01546 Peptidase family M20/M25/M40 LDL57_00790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_00790 PF03466 LysR substrate binding domain LDL57_00795 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL57_00795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDL57_00800 PF00440 Bacterial regulatory proteins, tetR family LDL57_00805 PF05958 tRNA (Uracil-5-)-methyltransferase LDL57_00810 PF01177 Asp/Glu/Hydantoin racemase LDL57_00845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_00845 PF03466 LysR substrate binding domain LDL57_00850 PF04219 Protein of unknown function, DUF LDL57_00855 PF13335 Magnesium chelatase, subunit ChlI C-terminal LDL57_00855 PF01078 Magnesium chelatase, subunit ChlI LDL57_00860 PF08046 IlvGEDA operon leader peptide LDL57_00865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDL57_00865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDL57_00865 PF00205 Thiamine pyrophosphate enzyme, central domain LDL57_00875 PF01063 Amino-transferase class IV LDL57_00880 PF00920 Dehydratase family LDL57_00885 PF00585 C-terminal regulatory domain of Threonine dehydratase LDL57_00885 PF00291 Pyridoxal-phosphate dependent enzyme LDL57_00890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_00890 PF03466 LysR substrate binding domain LDL57_00895 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LDL57_00895 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LDL57_00915 PF00580 UvrD/REP helicase N-terminal domain LDL57_00915 PF13361 UvrD-like helicase C-terminal domain LDL57_00920 PF02541 Ppx/GppA phosphatase family LDL57_00925 PF00271 Helicase conserved C-terminal domain LDL57_00925 PF00270 DEAD/DEAH box helicase LDL57_00930 PF00085 Thioredoxin LDL57_00935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDL57_00935 PF07497 Rho termination factor, RNA-binding domain LDL57_00935 PF07498 Rho termination factor, N-terminal domain LDL57_00940 PF00953 Glycosyl transferase family 4 LDL57_00945 PF02706 Chain length determinant protein LDL57_00950 PF02350 UDP-N-acetylglucosamine 2-epimerase LDL57_00955 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LDL57_00955 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LDL57_00955 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LDL57_00960 PF16363 GDP-mannose 4,6 dehydratase LDL57_00965 PF00483 Nucleotidyl transferase LDL57_00975 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDL57_00980 PF01943 Polysaccharide biosynthesis protein LDL57_00985 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 LDL57_00990 PF06899 WzyE protein, O-antigen assembly polymerase LDL57_00995 PF03808 Glycosyl transferase WecB/TagA/CpsF family LDL57_01000 PF00324 Amino acid permease LDL57_01025 PF07219 HemY protein N-terminus LDL57_01025 PF07719 Tetratricopeptide repeat LDL57_01030 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LDL57_01035 PF02602 Uroporphyrinogen-III synthase HemD LDL57_01040 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LDL57_01040 PF03900 Porphobilinogen deaminase, C-terminal domain LDL57_01045 PF01295 Adenylate cyclase, class-I LDL57_01045 PF12633 Adenylate cyclase NT domain LDL57_01050 PF01491 Frataxin-like domain LDL57_01060 PF01678 Diaminopimelate epimerase LDL57_01065 PF04340 Protein of unknown function, DUF484 LDL57_01070 PF00589 Phage integrase family LDL57_01070 PF02899 Phage integrase, N-terminal SAM-like domain LDL57_01075 PF13419 Haloacid dehalogenase-like hydrolase LDL57_01080 PF13361 UvrD-like helicase C-terminal domain LDL57_01080 PF00580 UvrD/REP helicase N-terminal domain LDL57_01085 PF01544 CorA-like Mg2+ transporter protein LDL57_01090 PF03061 Thioesterase superfamily LDL57_01095 PF09382 RQC domain LDL57_01095 PF00270 DEAD/DEAH box helicase LDL57_01095 PF00271 Helicase conserved C-terminal domain LDL57_01095 PF00570 HRDC domain LDL57_01095 PF16124 RecQ zinc-binding LDL57_01100 PF12146 Serine aminopeptidase, S33 LDL57_01115 PF12795 Mechanosensitive ion channel porin domain LDL57_01115 PF12794 Mechanosensitive ion channel inner membrane domain 1 LDL57_01115 PF00924 Mechanosensitive ion channel LDL57_01120 PF02666 Phosphatidylserine decarboxylase LDL57_01125 PF03193 RsgA GTPase LDL57_01130 PF00929 Exonuclease LDL57_01140 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LDL57_01145 PF01520 N-acetylmuramoyl-L-alanine amidase LDL57_01150 PF01119 DNA mismatch repair protein, C-terminal domain LDL57_01150 PF08676 MutL C terminal dimerisation domain LDL57_01160 PF17209 Hfq protein LDL57_01165 PF16360 GTP-binding GTPase Middle Region LDL57_01165 PF01926 50S ribosome-binding GTPase LDL57_01165 PF13167 GTP-binding GTPase N-terminal LDL57_01170 PF01145 SPFH domain / Band 7 family LDL57_01170 PF12221 Bacterial membrane protein N terminal LDL57_01175 PF01145 SPFH domain / Band 7 family LDL57_01180 PF00709 Adenylosuccinate synthetase LDL57_01185 PF02082 Transcriptional regulator LDL57_01190 PF17876 Cold shock domain LDL57_01190 PF08461 Ribonuclease R winged-helix domain LDL57_01190 PF08206 Ribonuclease B OB domain LDL57_01190 PF00773 RNB domain LDL57_01190 PF00575 S1 RNA binding domain LDL57_01195 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDL57_01195 PF00588 SpoU rRNA Methylase family LDL57_01205 PF01250 Ribosomal protein S6 LDL57_01210 PF00436 Single-strand binding protein family LDL57_01215 PF01084 Ribosomal protein S18 LDL57_01220 PF01281 Ribosomal protein L9, N-terminal domain LDL57_01220 PF03948 Ribosomal protein L9, C-terminal domain LDL57_01225 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LDL57_01225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDL57_01230 PF00459 Inositol monophosphatase family LDL57_01235 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LDL57_01240 PF06526 Protein of unknown function (DUF1107) LDL57_01245 PF05649 Peptidase family M13 LDL57_01245 PF01431 Peptidase family M13 LDL57_01250 PF00795 Carbon-nitrogen hydrolase LDL57_01255 PF17243 POTRA domain TamA domain 1 LDL57_01255 PF07244 Surface antigen variable number repeat LDL57_01255 PF01103 Surface antigen LDL57_01260 PF04357 TamB, inner membrane protein subunit of TAM complex LDL57_01265 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LDL57_01270 PF00719 Inorganic pyrophosphatase LDL57_01275 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LDL57_01280 PF02863 Arginine repressor, C-terminal domain LDL57_01280 PF01316 Arginine repressor, DNA binding domain LDL57_01285 PF00056 lactate/malate dehydrogenase, NAD binding domain LDL57_01285 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LDL57_01290 PF13693 Winged helix-turn-helix DNA-binding LDL57_01300 PF00348 Polyprenyl synthetase LDL57_01305 PF00829 Ribosomal prokaryotic L21 protein LDL57_01310 PF01016 Ribosomal L27 protein LDL57_01315 PF01018 GTP1/OBG LDL57_01315 PF01926 50S ribosome-binding GTPase LDL57_01320 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LDL57_01325 PF03449 Transcription elongation factor, N-terminal LDL57_01325 PF01272 Transcription elongation factor, GreA/GreB, C-term LDL57_01330 PF01985 CRS1 / YhbY (CRM) domain LDL57_01335 PF01728 FtsJ-like methyltransferase LDL57_01340 PF01434 Peptidase family M41 LDL57_01340 PF06480 FtsH Extracellular LDL57_01340 PF00004 ATPase family associated with various cellular activities (AAA) LDL57_01340 PF17862 AAA+ lid domain LDL57_01345 PF00809 Pterin binding enzyme LDL57_01350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDL57_01350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDL57_01350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDL57_01350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDL57_01355 PF03840 Preprotein translocase SecG subunit LDL57_01370 PF02576 RimP N-terminal domain LDL57_01370 PF17384 RimP C-terminal SH3 domain LDL57_01375 PF00575 S1 RNA binding domain LDL57_01375 PF08529 NusA N-terminal domain LDL57_01375 PF13184 NusA-like KH domain LDL57_01380 PF04760 Translation initiation factor IF-2, N-terminal region LDL57_01380 PF08364 Bacterial translation initiation factor IF-2 associated region LDL57_01380 PF11987 Translation-initiation factor 2 LDL57_01380 PF03144 Elongation factor Tu domain 2 LDL57_01380 PF00009 Elongation factor Tu GTP binding domain LDL57_01385 PF02033 Ribosome-binding factor A LDL57_01390 PF01509 TruB family pseudouridylate synthase (N terminal domain) LDL57_01390 PF09157 Pseudouridine synthase II TruB, C-terminal LDL57_01390 PF16198 tRNA pseudouridylate synthase B C-terminal domain LDL57_01395 PF00312 Ribosomal protein S15 LDL57_01400 PF00575 S1 RNA binding domain LDL57_01400 PF03725 3' exoribonuclease family, domain 2 LDL57_01400 PF01138 3' exoribonuclease family, domain 1 LDL57_01400 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LDL57_01400 PF00013 KH domain LDL57_01405 PF07719 Tetratricopeptide repeat LDL57_01405 PF13181 Tetratricopeptide repeat LDL57_01415 PF00271 Helicase conserved C-terminal domain LDL57_01415 PF03880 DbpA RNA binding domain LDL57_01415 PF00270 DEAD/DEAH box helicase LDL57_01415 PF12343 Cold shock protein DEAD box A LDL57_01425 PF13018 Extended Signal Peptide of Type V secretion system LDL57_01425 PF13332 Hemagglutinin repeat LDL57_01425 PF05860 haemagglutination activity domain LDL57_01425 PF04829 Pre-toxin domain with VENN motif LDL57_01430 PF13332 Hemagglutinin repeat LDL57_01430 PF05860 haemagglutination activity domain LDL57_01430 PF04829 Pre-toxin domain with VENN motif LDL57_01450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL57_01465 PF01136 Peptidase family U32 LDL57_01470 PF01136 Peptidase family U32 LDL57_01475 PF02036 SCP-2 sterol transfer family LDL57_01480 PF13508 Acetyltransferase (GNAT) domain LDL57_01485 PF01541 GIY-YIG catalytic domain LDL57_01510 PF01042 Endoribonuclease L-PSP LDL57_01515 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LDL57_01515 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LDL57_01520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDL57_01520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDL57_01525 PF06877 Regulator of ribonuclease activity B LDL57_01530 PF08264 Anticodon-binding domain of tRNA LDL57_01530 PF00133 tRNA synthetases class I (I, L, M and V) LDL57_01530 PF10458 Valyl tRNA synthetase tRNA binding arm LDL57_01535 PF04364 DNA polymerase III chi subunit, HolC LDL57_01540 PF00883 Cytosol aminopeptidase family, catalytic domain LDL57_01540 PF02789 Cytosol aminopeptidase family, N-terminal domain LDL57_01545 PF03739 Lipopolysaccharide export system permease LptF/LptG LDL57_01550 PF03739 Lipopolysaccharide export system permease LptF/LptG LDL57_01555 PF00144 Beta-lactamase LDL57_01575 PF16535 Type III cell invasion protein SipB LDL57_01575 PF04888 Secretion system effector C (SseC) like family LDL57_01585 PF07720 Tetratricopeptide repeat LDL57_01590 PF01312 FlhB HrpN YscU SpaS Family LDL57_01595 PF01311 Bacterial export proteins, family 1 LDL57_01600 PF01313 Bacterial export proteins, family 3 LDL57_01605 PF00813 FliP family LDL57_01610 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDL57_01630 PF03519 Invasion protein B family LDL57_01640 PF07201 HrpJ-like domain LDL57_01645 PF00263 Bacterial type II and III secretion system protein LDL57_01645 PF03958 Bacterial type II/III secretion system short domain LDL57_01650 PF12833 Helix-turn-helix domain LDL57_01670 PF01514 Secretory protein of YscJ/FliF family LDL57_01695 PF02384 N-6 DNA Methylase LDL57_01695 PF12161 HsdM N-terminal domain LDL57_01710 PF00795 Carbon-nitrogen hydrolase LDL57_01715 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LDL57_01720 PF00196 Bacterial regulatory proteins, luxR family LDL57_01720 PF00072 Response regulator receiver domain LDL57_01725 PF14338 Mrr N-terminal domain LDL57_01725 PF04471 Restriction endonuclease LDL57_01730 PF08548 Peptidase M10 serralysin C terminal LDL57_01730 PF00413 Matrixin LDL57_01730 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LDL57_01735 PF00860 Permease family LDL57_01740 PF01799 [2Fe-2S] binding domain LDL57_01740 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LDL57_01740 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LDL57_01745 PF00941 FAD binding domain in molybdopterin dehydrogenase LDL57_01750 PF01979 Amidohydrolase family LDL57_01760 PF12804 MobA-like NTP transferase domain LDL57_01770 PF02625 XdhC and CoxI family LDL57_01770 PF13478 XdhC Rossmann domain LDL57_01775 PF00696 Amino acid kinase family LDL57_01780 PF01979 Amidohydrolase family LDL57_01785 PF01546 Peptidase family M20/M25/M40 LDL57_01785 PF07687 Peptidase dimerisation domain LDL57_01790 PF00291 Pyridoxal-phosphate dependent enzyme LDL57_01805 PF00111 2Fe-2S iron-sulfur cluster binding domain LDL57_01805 PF01799 [2Fe-2S] binding domain LDL57_01810 PF00941 FAD binding domain in molybdopterin dehydrogenase LDL57_01810 PF03450 CO dehydrogenase flavoprotein C-terminal domain LDL57_01815 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LDL57_01815 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LDL57_01820 PF09383 NIL domain LDL57_01820 PF00005 ABC transporter LDL57_01825 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_01835 PF03180 NLPA lipoprotein LDL57_01855 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LDL57_01865 PF05947 Type VI secretion system, TssF LDL57_01875 PF06715 Gp5 C-terminal repeat (3 copies) LDL57_01875 PF04717 Type VI secretion system, phage-baseplate injector LDL57_01915 PF00004 ATPase family associated with various cellular activities (AAA) LDL57_01915 PF17871 AAA lid domain LDL57_01915 PF10431 C-terminal, D2-small domain, of ClpB protein LDL57_01915 PF07724 AAA domain (Cdc48 subfamily) LDL57_01920 PF00004 ATPase family associated with various cellular activities (AAA) LDL57_01920 PF07724 AAA domain (Cdc48 subfamily) LDL57_01920 PF17871 AAA lid domain LDL57_01920 PF10431 C-terminal, D2-small domain, of ClpB protein LDL57_01930 PF00072 Response regulator receiver domain LDL57_01930 PF00196 Bacterial regulatory proteins, luxR family LDL57_01935 PF00512 His Kinase A (phospho-acceptor) domain LDL57_01935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_01935 PF00072 Response regulator receiver domain LDL57_01935 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDL57_01935 PF01627 Hpt domain LDL57_01935 PF00989 PAS fold LDL57_01940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_01940 PF00512 His Kinase A (phospho-acceptor) domain LDL57_01940 PF01627 Hpt domain LDL57_01940 PF00072 Response regulator receiver domain LDL57_01940 PF00989 PAS fold LDL57_01940 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDL57_01955 PF00813 FliP family LDL57_01960 PF01313 Bacterial export proteins, family 3 LDL57_01965 PF01311 Bacterial export proteins, family 1 LDL57_01970 PF01312 FlhB HrpN YscU SpaS Family LDL57_01975 PF00072 Response regulator receiver domain LDL57_01975 PF00196 Bacterial regulatory proteins, luxR family LDL57_01980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_01980 PF00512 His Kinase A (phospho-acceptor) domain LDL57_01980 PF09456 RcsC Alpha-Beta-Loop (ABL) LDL57_01980 PF00072 Response regulator receiver domain LDL57_01990 PF00263 Bacterial type II and III secretion system protein LDL57_01990 PF03958 Bacterial type II/III secretion system short domain LDL57_02010 PF03433 EspA-like secreted protein LDL57_02015 PF03433 EspA-like secreted protein LDL57_02030 PF04888 Secretion system effector C (SseC) like family LDL57_02065 PF01514 Secretory protein of YscJ/FliF family LDL57_02100 PF00771 FHIPEP family LDL57_02105 PF18269 T3SS EscN ATPase C-terminal domain LDL57_02105 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDL57_02105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDL57_02125 PF13979 SopA-like catalytic domain LDL57_02125 PF13981 SopA-like central domain LDL57_02135 PF07690 Major Facilitator Superfamily LDL57_02140 PF01769 Divalent cation transporter LDL57_02140 PF03448 MgtE intracellular N domain LDL57_02140 PF00571 CBS domain LDL57_02150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDL57_02150 PF02378 Phosphotransferase system, EIIC LDL57_02155 PF00294 pfkB family carbohydrate kinase LDL57_02160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDL57_02160 PF00381 PTS HPr component phosphorylation site LDL57_02190 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LDL57_02305 PF05840 Bacteriophage replication gene A protein (GPA) LDL57_02315 PF17282 Family of unknown function (DUF5347) LDL57_02325 PF06892 Phage regulatory protein CII (CP76) LDL57_02335 PF16452 Bacteriophage CI repressor C-terminal domain LDL57_02335 PF07022 Bacteriophage CI repressor helix-turn-helix domain LDL57_02340 PF02899 Phage integrase, N-terminal SAM-like domain LDL57_02340 PF00589 Phage integrase family LDL57_02345 PF10899 Putative abortive phage resistance protein AbiGi, antitoxin LDL57_02390 PF01245 Ribosomal protein L19 LDL57_02395 PF01746 tRNA (Guanine-1)-methyltransferase LDL57_02400 PF01782 RimM N-terminal domain LDL57_02400 PF05239 PRC-barrel domain LDL57_02405 PF00886 Ribosomal protein S16 LDL57_02410 PF02978 Signal peptide binding domain LDL57_02410 PF02881 SRP54-type protein, helical bundle domain LDL57_02410 PF00448 SRP54-type protein, GTPase domain LDL57_02415 PF01578 Cytochrome C assembly protein LDL57_02420 PF01595 Cyclin M transmembrane N-terminal domain LDL57_02420 PF00571 CBS domain LDL57_02420 PF03471 Transporter associated domain LDL57_02425 PF02664 S-Ribosylhomocysteinase (LuxS) LDL57_02430 PF04262 Glutamate-cysteine ligase LDL57_02450 PF02599 Global regulator protein family LDL57_02455 PF02272 DHHA1 domain LDL57_02455 PF01411 tRNA synthetases class II (A) LDL57_02455 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LDL57_02460 PF00154 recA bacterial DNA recombination protein LDL57_02465 PF02464 Competence-damaged protein LDL57_02470 PF07690 Major Facilitator Superfamily LDL57_02475 PF01553 Acyltransferase LDL57_02475 PF00501 AMP-binding enzyme LDL57_02475 PF13193 AMP-binding enzyme C-terminal domain LDL57_02480 PF01202 Shikimate kinase LDL57_02485 PF00171 Aldehyde dehydrogenase family LDL57_02490 PF00696 Amino acid kinase family LDL57_02490 PF01472 PUA domain LDL57_02495 PF07417 Sigma factor-binding transcriptional regulator Crl LDL57_02505 PF00156 Phosphoribosyl transferase domain LDL57_02510 PF01546 Peptidase family M20/M25/M40 LDL57_02510 PF07687 Peptidase dimerisation domain LDL57_02515 PF11798 IMS family HHH motif LDL57_02515 PF00817 impB/mucB/samB family LDL57_02515 PF11799 impB/mucB/samB family C-terminal domain LDL57_02525 PF03009 Glycerophosphoryl diester phosphodiesterase family LDL57_02530 PF04400 (Na+)-NQR maturation NqrM LDL57_02535 PF02424 ApbE family LDL57_02540 PF00111 2Fe-2S iron-sulfur cluster binding domain LDL57_02540 PF00175 Oxidoreductase NAD-binding domain LDL57_02540 PF00970 Oxidoreductase FAD-binding domain LDL57_02545 PF02508 Rnf-Nqr subunit, membrane protein LDL57_02550 PF02508 Rnf-Nqr subunit, membrane protein LDL57_02555 PF04205 FMN-binding domain LDL57_02560 PF03116 NQR2, RnfD, RnfE family LDL57_02565 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LDL57_02565 PF11973 NQRA C-terminal domain LDL57_02570 PF03734 L,D-transpeptidase catalytic domain LDL57_02575 PF13230 Glutamine amidotransferases class-II LDL57_02580 PF13580 SIS domain LDL57_02585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDL57_02585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDL57_02585 PF09317 Domain of unknown function (DUF1974) LDL57_02590 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LDL57_02590 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LDL57_02595 PF03466 LysR substrate binding domain LDL57_02595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_02620 PF04452 RNA methyltransferase LDL57_02625 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LDL57_02625 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LDL57_02630 PF02622 Uncharacterized ACR, COG1678 LDL57_02635 PF03652 Holliday junction resolvase LDL57_02640 PF01168 Alanine racemase, N-terminal domain LDL57_02645 PF03807 NADP oxidoreductase coenzyme F420-dependent LDL57_02645 PF14748 Pyrroline-5-carboxylate reductase dimerisation LDL57_02650 PF02325 YGGT family LDL57_02655 PF01725 Ham1 family LDL57_02660 PF04055 Radical SAM superfamily LDL57_02660 PF06969 HemN C-terminal domain LDL57_02670 PF11101 Protein of unknown function (DUF2884) LDL57_02675 PF04960 Glutaminase LDL57_02680 PF04320 Protein with unknown function (DUF469) LDL57_02685 PF02390 Putative methyltransferase LDL57_02690 PF10576 Iron-sulfur binding domain of endonuclease III LDL57_02690 PF00730 HhH-GPD superfamily base excision DNA repair protein LDL57_02690 PF14815 NUDIX domain LDL57_02690 PF00633 Helix-hairpin-helix motif LDL57_02695 PF04362 Bacterial Fe(2+) trafficking LDL57_02700 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LDL57_02700 PF01464 Transglycosylase SLT domain LDL57_02725 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LDL57_02725 PF08548 Peptidase M10 serralysin C terminal LDL57_02725 PF00413 Matrixin LDL57_02740 PF08548 Peptidase M10 serralysin C terminal LDL57_02740 PF00413 Matrixin LDL57_02740 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LDL57_02765 PF13438 Domain of unknown function (DUF4113) LDL57_02765 PF00817 impB/mucB/samB family LDL57_02765 PF11799 impB/mucB/samB family C-terminal domain LDL57_02765 PF11798 IMS family HHH motif LDL57_02770 PF00717 Peptidase S24-like LDL57_02775 PF00202 Aminotransferase class-III LDL57_02780 PF16912 Glucose dehydrogenase C-terminus LDL57_02780 PF08240 Alcohol dehydrogenase GroES-like domain LDL57_02785 PF13419 Haloacid dehalogenase-like hydrolase LDL57_02790 PF07690 Major Facilitator Superfamily LDL57_02795 PF02435 Levansucrase/Invertase LDL57_02835 PF01514 Secretory protein of YscJ/FliF family LDL57_02845 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF LDL57_02865 PF06511 Type III secretion systems tip complex components LDL57_02885 PF07720 Tetratricopeptide repeat LDL57_02890 PF01312 FlhB HrpN YscU SpaS Family LDL57_02895 PF01311 Bacterial export proteins, family 1 LDL57_02900 PF01313 Bacterial export proteins, family 3 LDL57_02910 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDL57_02925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDL57_02925 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDL57_02925 PF18269 T3SS EscN ATPase C-terminal domain LDL57_02935 PF00771 FHIPEP family LDL57_02940 PF07201 HrpJ-like domain LDL57_02945 PF03958 Bacterial type II/III secretion system short domain LDL57_02945 PF00263 Bacterial type II and III secretion system protein LDL57_02955 PF00486 Transcriptional regulatory protein, C terminal LDL57_02965 PF03553 Na+/H+ antiporter family LDL57_02970 PF00490 Delta-aminolevulinic acid dehydratase LDL57_02975 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LDL57_02980 PF03063 Prismane/CO dehydrogenase family LDL57_03000 PF00375 Sodium:dicarboxylate symporter family LDL57_03015 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LDL57_03015 PF08548 Peptidase M10 serralysin C terminal LDL57_03015 PF00413 Matrixin LDL57_03035 PF00171 Aldehyde dehydrogenase family LDL57_03050 PF17763 Glutaminase/Asparaginase C-terminal domain LDL57_03050 PF00710 Asparaginase, N-terminal LDL57_03065 PF01116 Fructose-bisphosphate aldolase class-II LDL57_03070 PF00162 Phosphoglycerate kinase LDL57_03075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDL57_03075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDL57_03080 PF00456 Transketolase, thiamine diphosphate binding domain LDL57_03080 PF02780 Transketolase, C-terminal domain LDL57_03080 PF02779 Transketolase, pyrimidine binding domain LDL57_03090 PF00929 Exonuclease LDL57_03095 PF00075 RNase H LDL57_03100 PF08241 Methyltransferase domain LDL57_03105 PF00753 Metallo-beta-lactamase superfamily LDL57_03105 PF16123 Hydroxyacylglutathione hydrolase C-terminus LDL57_03110 PF01476 LysM domain LDL57_03110 PF01464 Transglycosylase SLT domain LDL57_03120 PF05860 haemagglutination activity domain LDL57_03120 PF13018 Extended Signal Peptide of Type V secretion system LDL57_03120 PF05594 Haemagluttinin repeat LDL57_03120 PF13332 Hemagglutinin repeat LDL57_03125 PF00113 Enolase, C-terminal TIM barrel domain LDL57_03125 PF03952 Enolase, N-terminal domain LDL57_03130 PF06418 CTP synthase N-terminus LDL57_03130 PF00117 Glutamine amidotransferase class-I LDL57_03135 PF03819 MazG nucleotide pyrophosphohydrolase domain LDL57_03140 PF13291 ACT domain LDL57_03140 PF04607 Region found in RelA / SpoT proteins LDL57_03140 PF02824 TGS domain LDL57_03145 PF01938 TRAM domain LDL57_03145 PF05958 tRNA (Uracil-5-)-methyltransferase LDL57_03150 PF01966 HD domain LDL57_03150 PF13286 Phosphohydrolase-associated domain LDL57_03155 PF01048 Phosphorylase superfamily LDL57_03160 PF01521 Iron-sulphur cluster biosynthesis LDL57_03165 PF00202 Aminotransferase class-III LDL57_03170 PF00912 Transglycosylase LDL57_03170 PF00905 Penicillin binding protein transpeptidase domain LDL57_03170 PF14814 Bifunctional transglycosylase second domain LDL57_03170 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal LDL57_03175 PF03749 Sugar fermentation stimulation protein RE domain LDL57_03175 PF17746 SfsA N-terminal OB domain LDL57_03180 PF01258 Prokaryotic dksA/traR C4-type zinc finger LDL57_03185 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDL57_03190 PF01743 Poly A polymerase head domain LDL57_03190 PF12626 Polymerase A arginine-rich C-terminus LDL57_03190 PF12627 Probable RNA and SrmB- binding site of polymerase A LDL57_03195 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LDL57_03200 PF01061 ABC-2 type transporter LDL57_03205 PF00005 ABC transporter LDL57_03210 PF00484 Carbonic anhydrase LDL57_03215 PF00156 Phosphoribosyl transferase domain LDL57_03220 PF00394 Multicopper oxidase LDL57_03220 PF07731 Multicopper oxidase LDL57_03220 PF07732 Multicopper oxidase LDL57_03220 PF10518 TAT (twin-arginine translocation) pathway signal sequence LDL57_03225 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LDL57_03230 PF17284 Spermidine synthase tetramerisation domain LDL57_03235 PF02675 S-adenosylmethionine decarboxylase LDL57_03250 PF09370 Phosphoenolpyruvate hydrolase-like LDL57_03255 PF01554 MatE LDL57_03260 PF02492 CobW/HypB/UreG, nucleotide-binding domain LDL57_03260 PF07683 Cobalamin synthesis protein cobW C-terminal domain LDL57_03265 PF04328 Selenoprotein, putative LDL57_03270 PF13722 5TM C-terminal transporter carbon starvation CstA LDL57_03270 PF02554 Carbon starvation protein CstA LDL57_03275 PF00419 Fimbrial protein LDL57_03280 PF13953 PapC C-terminal domain LDL57_03280 PF13954 PapC N-terminal domain LDL57_03280 PF00577 Outer membrane usher protein LDL57_03285 PF02753 Pili assembly chaperone PapD, C-terminal domain LDL57_03285 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDL57_03300 PF00919 Uncharacterized protein family UPF0004 LDL57_03300 PF18693 TRAM domain LDL57_03300 PF04055 Radical SAM superfamily LDL57_03305 PF10940 Protein of unknown function (DUF2618) LDL57_03310 PF01276 Orn/Lys/Arg decarboxylase, major domain LDL57_03310 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LDL57_03310 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LDL57_03325 PF00267 Gram-negative porin LDL57_03335 PF01867 CRISPR associated protein Cas1 LDL57_03375 PF02666 Phosphatidylserine decarboxylase LDL57_03380 PF00196 Bacterial regulatory proteins, luxR family LDL57_03380 PF03472 Autoinducer binding domain LDL57_03385 PF03472 Autoinducer binding domain LDL57_03385 PF00196 Bacterial regulatory proteins, luxR family LDL57_03425 PF00583 Acetyltransferase (GNAT) family LDL57_03430 PF05188 MutS domain II LDL57_03430 PF05190 MutS family domain IV LDL57_03430 PF00488 MutS domain V LDL57_03430 PF01624 MutS domain I LDL57_03430 PF05192 MutS domain III LDL57_03435 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LDL57_03440 PF00140 Sigma-70 factor, region 1.2 LDL57_03440 PF04542 Sigma-70 region 2 LDL57_03440 PF04539 Sigma-70 region 3 LDL57_03440 PF04545 Sigma-70, region 4 LDL57_03445 PF01476 LysM domain LDL57_03445 PF01551 Peptidase family M23 LDL57_03455 PF01975 Survival protein SurE LDL57_03460 PF01142 tRNA pseudouridine synthase D (TruD) LDL57_03465 PF02542 YgbB family LDL57_03470 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LDL57_03475 PF04977 Septum formation initiator LDL57_03480 PF01242 6-pyruvoyl tetrahydropterin synthase LDL57_03485 PF04055 Radical SAM superfamily LDL57_03490 PF00324 Amino acid permease LDL57_03495 PF03372 Endonuclease/Exonuclease/phosphatase family LDL57_03535 PF09383 NIL domain LDL57_03535 PF00005 ABC transporter LDL57_03540 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_03545 PF03180 NLPA lipoprotein LDL57_03555 PF01980 tRNA-methyltransferase O LDL57_03555 PF18389 TrmO C-terminal domain LDL57_03560 PF03129 Anticodon binding domain LDL57_03560 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDL57_03560 PF04073 Aminoacyl-tRNA editing domain LDL57_03565 PF17185 NlpE C-terminal OB domain LDL57_03565 PF04170 NlpE N-terminal domain LDL57_03570 PF07073 Modulator of Rho-dependent transcription termination (ROF) LDL57_03575 PF11734 TilS substrate C-terminal domain LDL57_03575 PF09179 TilS substrate binding domain LDL57_03575 PF01171 PP-loop family LDL57_03585 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LDL57_03590 PF02811 PHP domain LDL57_03590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDL57_03590 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDL57_03590 PF14579 Helix-hairpin-helix motif LDL57_03590 PF01336 OB-fold nucleic acid binding domain LDL57_03595 PF01351 Ribonuclease HII LDL57_03600 PF02684 Lipid-A-disaccharide synthetase LDL57_03605 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LDL57_03605 PF00132 Bacterial transferase hexapeptide (six repeats) LDL57_03610 PF07977 FabA-like domain LDL57_03615 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LDL57_03615 PF00132 Bacterial transferase hexapeptide (six repeats) LDL57_03620 PF03938 Outer membrane protein (OmpH-like) LDL57_03625 PF07244 Surface antigen variable number repeat LDL57_03625 PF01103 Surface antigen LDL57_03630 PF17820 PDZ domain LDL57_03630 PF02163 Peptidase family M50 LDL57_03640 PF01255 Putative undecaprenyl diphosphate synthase LDL57_03645 PF13288 DXP reductoisomerase C-terminal domain LDL57_03645 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LDL57_03645 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LDL57_03650 PF01765 Ribosome recycling factor LDL57_03655 PF00696 Amino acid kinase family LDL57_03660 PF00889 Elongation factor TS LDL57_03665 PF00318 Ribosomal protein S2 LDL57_03670 PF00557 Metallopeptidase family M24 LDL57_03675 PF01842 ACT domain LDL57_03675 PF01966 HD domain LDL57_03675 PF08335 GlnD PII-uridylyltransferase LDL57_03680 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LDL57_03680 PF14602 Hexapeptide repeat of succinyl-transferase LDL57_03680 PF00132 Bacterial transferase hexapeptide (six repeats) LDL57_03685 PF11944 Protein of unknown function (DUF3461) LDL57_03690 PF00849 RNA pseudouridylate synthase LDL57_03700 PF07348 Syd protein (SUKH-2) LDL57_03705 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LDL57_03705 PF14489 QueF-like protein LDL57_03710 PF03641 Possible lysine decarboxylase LDL57_03710 PF11892 Domain of unknown function (DUF3412) LDL57_03710 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LDL57_03715 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDL57_03715 PF01367 5'-3' exonuclease, C-terminal SAM fold LDL57_03720 PF01728 FtsJ-like methyltransferase LDL57_03720 PF18125 RlmM ferredoxin-like domain LDL57_03730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_03730 PF03466 LysR substrate binding domain LDL57_03735 PF00899 ThiF family LDL57_03775 PF01520 N-acetylmuramoyl-L-alanine amidase LDL57_03775 PF11741 AMIN domain LDL57_03780 PF00696 Amino acid kinase family LDL57_03780 PF00583 Acetyltransferase (GNAT) family LDL57_03790 PF13538 UvrD-like helicase C-terminal domain LDL57_03795 PF12705 PD-(D/E)XK nuclease superfamily LDL57_03795 PF00580 UvrD/REP helicase N-terminal domain LDL57_03795 PF13361 UvrD-like helicase C-terminal domain LDL57_03800 PF16187 Middle or third domain of peptidase_M16 LDL57_03800 PF00675 Insulinase (Peptidase family M16) LDL57_03800 PF05193 Peptidase M16 inactive domain LDL57_03805 PF17946 RecC C-terminal domain LDL57_03820 PF07963 Prokaryotic N-terminal methylation motif LDL57_03830 PF00303 Thymidylate synthase LDL57_03835 PF01790 Prolipoprotein diacylglyceryl transferase LDL57_03840 PF00293 NUDIX domain LDL57_03850 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_03855 PF00005 ABC transporter LDL57_03860 PF00176 SNF2 family N-terminal domain LDL57_03860 PF18337 RapA N-terminal Tudor like domain LDL57_03860 PF00271 Helicase conserved C-terminal domain LDL57_03860 PF18339 RapA N-terminal Tudor like domain 1 LDL57_03860 PF12137 RNA polymerase recycling family C-terminal LDL57_03865 PF00849 RNA pseudouridylate synthase LDL57_03870 PF00226 DnaJ domain LDL57_03870 PF05099 Tellurite resistance protein TerB LDL57_03875 PF04453 LPS transport system D LDL57_03875 PF03968 OstA-like protein LDL57_03880 PF09312 SurA N-terminal domain LDL57_03885 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LDL57_03890 PF00398 Ribosomal RNA adenine dimethylase LDL57_03895 PF04379 ApaG domain LDL57_03900 PF00149 Calcineurin-like phosphoesterase LDL57_03905 PF00186 Dihydrofolate reductase LDL57_03910 PF07732 Multicopper oxidase LDL57_03910 PF07731 Multicopper oxidase LDL57_03915 PF01553 Acyltransferase LDL57_03920 PF03989 DNA gyrase C-terminal domain, beta-propeller LDL57_03920 PF00521 DNA gyrase/topoisomerase IV, subunit A LDL57_03925 PF01751 Toprim domain LDL57_03925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_03925 PF00986 DNA gyrase B subunit, carboxyl terminus LDL57_03925 PF00204 DNA gyrase B LDL57_03930 PF05728 Uncharacterised protein family (UPF0227) LDL57_03955 PF00293 NUDIX domain LDL57_03960 PF02321 Outer membrane efflux protein LDL57_03965 PF06693 Protein of unknown function (DUF1190) LDL57_03970 PF03738 Glutathionylspermidine synthase preATP-grasp LDL57_03975 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LDL57_03980 PF04380 Membrane fusogenic activity LDL57_03985 PF01467 Cytidylyltransferase-like LDL57_03985 PF00294 pfkB family carbohydrate kinase LDL57_03990 PF08335 GlnD PII-uridylyltransferase LDL57_03990 PF03710 Glutamate-ammonia ligase adenylyltransferase LDL57_03995 PF01928 CYTH domain LDL57_04000 PF08239 Bacterial SH3 domain LDL57_04005 PF01743 Poly A polymerase head domain LDL57_04005 PF12627 Probable RNA and SrmB- binding site of polymerase A LDL57_04005 PF01966 HD domain LDL57_04010 PF02152 Dihydroneopterin aldolase LDL57_04015 PF02660 Glycerol-3-phosphate acyltransferase LDL57_04020 PF00814 Glycoprotease family LDL57_04025 PF01165 Ribosomal protein S21 LDL57_04030 PF10410 DnaB-helicase binding domain of primase LDL57_04030 PF08278 DNA primase DnaG DnaB-binding LDL57_04030 PF08275 DNA primase catalytic core, N-terminal domain LDL57_04030 PF01807 CHC2 zinc finger LDL57_04035 PF04545 Sigma-70, region 4 LDL57_04035 PF04546 Sigma-70, non-essential region LDL57_04035 PF04539 Sigma-70 region 3 LDL57_04035 PF04542 Sigma-70 region 2 LDL57_04035 PF00140 Sigma-70 factor, region 1.2 LDL57_04035 PF03979 Sigma-70 factor, region 1.1 LDL57_04040 PF00589 Phage integrase family LDL57_04040 PF02899 Phage integrase, N-terminal SAM-like domain LDL57_04060 PF06892 Phage regulatory protein CII (CP76) LDL57_04080 PF05840 Bacteriophage replication gene A protein (GPA) LDL57_04200 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LDL57_04215 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA LDL57_04245 PF01668 SmpB protein LDL57_04250 PF03364 Polyketide cyclase / dehydrase and lipid transport LDL57_04255 PF03658 RnfH family Ubiquitin LDL57_04260 PF04355 SmpA / OmlA family LDL57_04265 PF02463 RecF/RecN/SMC N terminal domain LDL57_04270 PF01513 ATP-NAD kinase LDL57_04275 PF01025 GrpE LDL57_04280 PF03167 Uracil DNA glycosylase superfamily LDL57_04285 PF01228 Glycine radical LDL57_04290 PF00271 Helicase conserved C-terminal domain LDL57_04290 PF00270 DEAD/DEAH box helicase LDL57_04295 PF00890 FAD binding domain LDL57_04295 PF02910 Fumarate reductase flavoprotein C-term LDL57_04300 PF04542 Sigma-70 region 2 LDL57_04300 PF08281 Sigma-70, region 4 LDL57_04305 PF03873 Anti sigma-E protein RseA, C-terminal domain LDL57_04305 PF03872 Anti sigma-E protein RseA, N-terminal domain LDL57_04310 PF03888 MucB/RseB N-terminal domain LDL57_04310 PF17188 MucB/RseB C-terminal domain LDL57_04320 PF00679 Elongation factor G C-terminus LDL57_04320 PF03144 Elongation factor Tu domain 2 LDL57_04320 PF06421 GTP-binding protein LepA C-terminus LDL57_04320 PF00009 Elongation factor Tu GTP binding domain LDL57_04325 PF10502 Signal peptidase, peptidase S26 LDL57_04330 PF00035 Double-stranded RNA binding motif LDL57_04330 PF14622 Ribonuclease-III-like LDL57_04335 PF07650 KH domain LDL57_04335 PF01926 50S ribosome-binding GTPase LDL57_04340 PF02565 Recombination protein O C terminal LDL57_04340 PF11967 Recombination protein O N terminal LDL57_04345 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LDL57_04350 PF01648 4'-phosphopantetheinyl transferase superfamily LDL57_04355 PF12838 4Fe-4S dicluster domain LDL57_04360 PF00884 Sulfatase LDL57_04365 PF14437 MafB19-like deaminase LDL57_04370 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDL57_04370 PF01464 Transglycosylase SLT domain LDL57_04375 PF02769 AIR synthase related protein, C-terminal domain LDL57_04375 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LDL57_04375 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LDL57_04380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_04380 PF00512 His Kinase A (phospho-acceptor) domain LDL57_04385 PF13942 YfhG lipoprotein LDL57_04390 PF00072 Response regulator receiver domain LDL57_04390 PF00158 Sigma-54 interaction domain LDL57_04395 PF00795 Carbon-nitrogen hydrolase LDL57_04395 PF02540 NAD synthase LDL57_04400 PF00543 Nitrogen regulatory protein P-II LDL57_04405 PF00042 Globin LDL57_04405 PF00970 Oxidoreductase FAD-binding domain LDL57_04405 PF00175 Oxidoreductase NAD-binding domain LDL57_04410 PF00464 Serine hydroxymethyltransferase LDL57_04415 PF12832 MFS_1 like family LDL57_04425 PF00459 Inositol monophosphatase family LDL57_04430 PF00588 SpoU rRNA Methylase family LDL57_04435 PF02082 Transcriptional regulator LDL57_04440 PF00266 Aminotransferase class-V LDL57_04445 PF01592 NifU-like N terminal domain LDL57_04450 PF01521 Iron-sulphur cluster biosynthesis LDL57_04465 PF00111 2Fe-2S iron-sulfur cluster binding domain LDL57_04470 PF04384 Iron-sulphur cluster assembly LDL57_04475 PF00883 Cytosol aminopeptidase family, catalytic domain LDL57_04475 PF12404 Peptidase LDL57_04485 PF00334 Nucleoside diphosphate kinase LDL57_04490 PF04055 Radical SAM superfamily LDL57_04500 PF13464 Domain of unknown function (DUF4115) LDL57_04505 PF04551 GcpE protein LDL57_04510 PF13393 Histidyl-tRNA synthetase LDL57_04510 PF03129 Anticodon binding domain LDL57_04515 PF09976 Tetratricopeptide repeat-like domain LDL57_04520 PF13360 PQQ-like domain LDL57_04525 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LDL57_04525 PF01926 50S ribosome-binding GTPase LDL57_04550 PF00583 Acetyltransferase (GNAT) family LDL57_04560 PF00291 Pyridoxal-phosphate dependent enzyme LDL57_04565 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDL57_04570 PF00391 PEP-utilising enzyme, mobile domain LDL57_04570 PF02896 PEP-utilising enzyme, TIM barrel domain LDL57_04570 PF05524 PEP-utilising enzyme, N-terminal LDL57_04575 PF00381 PTS HPr component phosphorylation site LDL57_04580 PF00291 Pyridoxal-phosphate dependent enzyme LDL57_04590 PF04354 ZipA, C-terminal FtsZ-binding domain LDL57_04595 PF00533 BRCA1 C Terminus (BRCT) domain LDL57_04595 PF01653 NAD-dependent DNA ligase adenylation domain LDL57_04595 PF03120 NAD-dependent DNA ligase OB-fold domain LDL57_04595 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LDL57_04595 PF12826 Helix-hairpin-helix motif LDL57_04600 PF07670 Nucleoside recognition LDL57_04600 PF07662 Na+ dependent nucleoside transporter C-terminus LDL57_04600 PF01773 Na+ dependent nucleoside transporter N-terminus LDL57_04605 PF12843 Putative quorum-sensing-regulated virulence factor LDL57_04615 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDL57_04650 PF04972 BON domain LDL57_04650 PF01476 LysM domain LDL57_04655 PF10371 Domain of unknown function LDL57_04655 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LDL57_04655 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LDL57_04655 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LDL57_04655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDL57_04660 PF03358 NADPH-dependent FMN reductase LDL57_04665 PF00582 Universal stress protein family LDL57_04685 PF00005 ABC transporter LDL57_04685 PF08402 TOBE domain LDL57_04690 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_04695 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_04700 PF13416 Bacterial extracellular solute-binding protein LDL57_04705 PF07993 Male sterility protein LDL57_04705 PF00550 Phosphopantetheine attachment site LDL57_04705 PF00501 AMP-binding enzyme LDL57_04715 PF04333 MlaA lipoprotein LDL57_04720 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LDL57_04730 PF02803 Thiolase, C-terminal domain LDL57_04730 PF00108 Thiolase, N-terminal domain LDL57_04735 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LDL57_04735 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LDL57_04735 PF00378 Enoyl-CoA hydratase/isomerase LDL57_04740 PF00300 Histidine phosphatase superfamily (branch 1) LDL57_04745 PF01713 Smr domain LDL57_04750 PF05175 Methyltransferase small domain LDL57_04755 PF01264 Chorismate synthase LDL57_04765 PF08891 YfcL protein LDL57_04775 PF01266 FAD dependent oxidoreductase LDL57_04775 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LDL57_04780 PF00109 Beta-ketoacyl synthase, N-terminal domain LDL57_04780 PF02801 Beta-ketoacyl synthase, C-terminal domain LDL57_04785 PF00892 EamA-like transporter family LDL57_04795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDL57_04795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDL57_04795 PF11890 Domain of unknown function (DUF3410) LDL57_04800 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDL57_04800 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDL57_04805 PF01416 tRNA pseudouridine synthase LDL57_04810 PF09335 SNARE associated Golgi protein LDL57_04815 PF01039 Carboxyl transferase domain LDL57_04815 PF17848 Acetyl-coA carboxylase zinc finger domain LDL57_04820 PF02875 Mur ligase family, glutamate ligase domain LDL57_04820 PF08245 Mur ligase middle domain LDL57_04825 PF05036 Sporulation related domain LDL57_04830 PF02674 Colicin V production protein LDL57_04835 PF00156 Phosphoribosyl transferase domain LDL57_04840 PF02441 Flavoprotein LDL57_04845 PF08338 Domain of unknown function (DUF1731) LDL57_04845 PF01370 NAD dependent epimerase/dehydratase family LDL57_04850 PF00293 NUDIX domain LDL57_04860 PF03534 Salmonella virulence plasmid 65kDa B protein LDL57_04860 PF12255 Insecticide toxin TcdB middle/C-terminal region LDL57_04860 PF12256 Insecticide toxin TcdB middle/N-terminal region LDL57_04865 PF03534 Salmonella virulence plasmid 65kDa B protein LDL57_04865 PF12255 Insecticide toxin TcdB middle/C-terminal region LDL57_04865 PF12256 Insecticide toxin TcdB middle/N-terminal region LDL57_04870 PF18413 Neuraminidase-like domain LDL57_04870 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain LDL57_04870 PF18413 Neuraminidase-like domain LDL57_04870 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain LDL57_04890 PF05785 Rho-activating domain of cytotoxic necrotizing factor LDL57_04890 PF18807 Tripartite Tc toxins repeat LDL57_04900 PF01515 Phosphate acetyl/butaryl transferase LDL57_04900 PF07085 DRTGG domain LDL57_04905 PF00871 Acetokinase family LDL57_04910 PF04217 Protein of unknown function, DUF412 LDL57_04915 PF03887 YfbU domain LDL57_04920 PF13419 Haloacid dehalogenase-like hydrolase LDL57_04930 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LDL57_04930 PF00589 Phage integrase family LDL57_04975 PF08346 AntA/AntB antirepressor LDL57_04975 PF10548 P22AR C-terminal domain LDL57_05015 PF00717 Peptidase S24-like LDL57_05060 PF00772 DnaB-like helicase N terminal domain LDL57_05060 PF03796 DnaB-like helicase C terminal domain LDL57_05095 PF02498 BRO family, N-terminal domain LDL57_05095 PF10548 P22AR C-terminal domain LDL57_05120 PF00959 Phage lysozyme LDL57_05240 PF13505 Outer membrane protein beta-barrel domain LDL57_05310 PF03544 Gram-negative bacterial TonB protein C-terminal LDL57_05320 PF09669 Phage regulatory protein Rha (Phage_pRha) LDL57_05320 PF10549 ORF11CD3 domain LDL57_05335 PF00155 Aminotransferase class I and II LDL57_05340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_05340 PF03466 LysR substrate binding domain LDL57_05345 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LDL57_05350 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LDL57_05355 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LDL57_05355 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LDL57_05365 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LDL57_05365 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LDL57_05365 PF10531 SLBB domain LDL57_05370 PF00384 Molybdopterin oxidoreductase LDL57_05370 PF01568 Molydopterin dinucleotide binding domain LDL57_05370 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LDL57_05370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDL57_05375 PF00146 NADH dehydrogenase LDL57_05380 PF12838 4Fe-4S dicluster domain LDL57_05385 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LDL57_05390 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LDL57_05395 PF00361 Proton-conducting membrane transporter LDL57_05395 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LDL57_05400 PF00361 Proton-conducting membrane transporter LDL57_05405 PF00361 Proton-conducting membrane transporter LDL57_05410 PF00425 chorismate binding enzyme LDL57_05415 PF00425 chorismate binding enzyme LDL57_05420 PF16582 Middle domain of thiamine pyrophosphate LDL57_05420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDL57_05420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDL57_05425 PF12697 Alpha/beta hydrolase family LDL57_05430 PF00378 Enoyl-CoA hydratase/isomerase LDL57_05435 PF13378 Enolase C-terminal domain-like LDL57_05440 PF00501 AMP-binding enzyme LDL57_05440 PF13193 AMP-binding enzyme C-terminal domain LDL57_05445 PF00199 Catalase LDL57_05445 PF06628 Catalase-related immune-responsive LDL57_05455 PF03222 Tryptophan/tyrosine permease family LDL57_05460 PF08241 Methyltransferase domain LDL57_05465 PF00111 2Fe-2S iron-sulfur cluster binding domain LDL57_05470 PF00268 Ribonucleotide reductase, small chain LDL57_05475 PF03477 ATP cone domain LDL57_05475 PF00317 Ribonucleotide reductase, all-alpha domain LDL57_05475 PF02867 Ribonucleotide reductase, barrel domain LDL57_05485 PF03989 DNA gyrase C-terminal domain, beta-propeller LDL57_05485 PF00521 DNA gyrase/topoisomerase IV, subunit A LDL57_05490 PF00072 Response regulator receiver domain LDL57_05490 PF09456 RcsC Alpha-Beta-Loop (ABL) LDL57_05490 PF00512 His Kinase A (phospho-acceptor) domain LDL57_05490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_05495 PF00072 Response regulator receiver domain LDL57_05495 PF00196 Bacterial regulatory proteins, luxR family LDL57_05500 PF01627 Hpt domain LDL57_05500 PF16359 RcsD-ABL domain LDL57_05500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_05545 PF11893 Domain of unknown function (DUF3413) LDL57_05545 PF00884 Sulfatase LDL57_05550 PF07208 Protein of unknown function (DUF1414) LDL57_05555 PF04245 37-kD nucleoid-associated bacterial protein LDL57_05570 PF04606 Ogr/Delta-like zinc finger LDL57_05605 PF17482 Phage tail sheath C-terminal domain LDL57_05605 PF04984 Phage tail sheath protein subtilisin-like domain LDL57_05610 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LDL57_05655 PF01555 DNA methylase LDL57_05670 PF00959 Phage lysozyme LDL57_05795 PF00589 Phage integrase family LDL57_05795 PF02899 Phage integrase, N-terminal SAM-like domain LDL57_05800 PF01386 Ribosomal L25p family LDL57_05805 PF04851 Type III restriction enzyme, res subunit LDL57_05805 PF00271 Helicase conserved C-terminal domain LDL57_05810 PF01479 S4 domain LDL57_05810 PF00849 RNA pseudouridylate synthase LDL57_05815 PF07690 Major Facilitator Superfamily LDL57_05820 PF13989 YejG-like protein LDL57_05825 PF00877 NlpC/P60 family LDL57_05840 PF03222 Tryptophan/tyrosine permease family LDL57_05845 PF01261 Xylose isomerase-like TIM barrel LDL57_05850 PF03601 Conserved hypothetical protein 698 LDL57_05855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_05855 PF03466 LysR substrate binding domain LDL57_05860 PF00324 Amino acid permease LDL57_05875 PF00005 ABC transporter LDL57_05880 PF07715 TonB-dependent Receptor Plug Domain LDL57_05880 PF00593 TonB dependent receptor LDL57_05890 PF13520 Amino acid permease LDL57_05895 PF08411 Exonuclease C-terminal LDL57_05895 PF00929 Exonuclease LDL57_05900 PF04363 Protein of unknown function (DUF496) LDL57_05910 PF10150 Ribonuclease E/G family LDL57_05910 PF12111 Polyribonucleotide phosphorylase C terminal LDL57_05910 PF00575 S1 RNA binding domain LDL57_05915 PF01479 S4 domain LDL57_05915 PF00849 RNA pseudouridylate synthase LDL57_05920 PF02545 Maf-like protein LDL57_05925 PF02620 Large ribosomal RNA subunit accumulation protein YceD LDL57_05930 PF01783 Ribosomal L32p protein family LDL57_05935 PF02504 Fatty acid synthesis protein LDL57_05940 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDL57_05940 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDL57_05945 PF00698 Acyl transferase domain LDL57_05955 PF00550 Phosphopantetheine attachment site LDL57_05960 PF00109 Beta-ketoacyl synthase, N-terminal domain LDL57_05960 PF02801 Beta-ketoacyl synthase, C-terminal domain LDL57_05965 PF01063 Amino-transferase class IV LDL57_05970 PF02618 YceG-like family LDL57_05975 PF02223 Thymidylate kinase LDL57_05980 PF09115 DNA polymerase III, delta subunit, C terminal LDL57_05985 PF01026 TatD related DNase LDL57_05990 PF01230 HIT domain LDL57_05995 PF13036 Peptidoglycan-synthase activator LpoB LDL57_06000 PF01636 Phosphotransferase enzyme family LDL57_06005 PF00933 Glycosyl hydrolase family 3 N terminal domain LDL57_06020 PF11713 Peptidase C80 family LDL57_06020 PF07634 RtxA repeat LDL57_06020 PF12146 Serine aminopeptidase, S33 LDL57_06020 PF16671 Actin cross-linking domain LDL57_06020 PF11647 Membrane Localization Domain LDL57_06035 PF04488 Glycosyltransferase sugar-binding region containing DXD motif LDL57_06075 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL57_06080 PF17757 UvrB interaction domain LDL57_06080 PF02559 CarD-like/TRCF domain LDL57_06080 PF00270 DEAD/DEAH box helicase LDL57_06080 PF00271 Helicase conserved C-terminal domain LDL57_06080 PF03461 TRCF domain LDL57_06085 PF02687 FtsX-like permease family LDL57_06085 PF12704 MacB-like periplasmic core domain LDL57_06090 PF00005 ABC transporter LDL57_06095 PF02687 FtsX-like permease family LDL57_06095 PF12704 MacB-like periplasmic core domain LDL57_06100 PF02146 Sir2 family LDL57_06105 PF07687 Peptidase dimerisation domain LDL57_06105 PF01546 Peptidase family M20/M25/M40 LDL57_06110 PF08007 Cupin superfamily protein LDL57_06115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_06115 PF08918 PhoQ Sensor LDL57_06120 PF00072 Response regulator receiver domain LDL57_06120 PF00486 Transcriptional regulatory protein, C terminal LDL57_06125 PF00206 Lyase LDL57_06125 PF08328 Adenylosuccinate lyase C-terminal LDL57_06130 PF04356 Protein of unknown function (DUF489) LDL57_06140 PF00293 NUDIX domain LDL57_06150 PF00180 Isocitrate/isopropylmalate dehydrogenase LDL57_06155 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LDL57_06155 PF00589 Phage integrase family LDL57_06160 PF07825 Excisionase-like protein LDL57_06240 PF01381 Helix-turn-helix LDL57_06240 PF00717 Peptidase S24-like LDL57_06280 PF00772 DnaB-like helicase N terminal domain LDL57_06280 PF03796 DnaB-like helicase C terminal domain LDL57_06310 PF06530 Phage antitermination protein Q LDL57_06335 PF00959 Phage lysozyme LDL57_06365 PF10668 Phage terminase small subunit LDL57_06365 PF03592 Terminase small subunit LDL57_06460 PF01385 Probable transposase LDL57_06460 PF07282 Putative transposase DNA-binding domain LDL57_06460 PF12323 Helix-turn-helix domain LDL57_06515 PF10548 P22AR C-terminal domain LDL57_06515 PF02498 BRO family, N-terminal domain LDL57_06535 PF01510 N-acetylmuramoyl-L-alanine amidase LDL57_06565 PF01235 Sodium:alanine symporter family LDL57_06575 PF06445 GyrI-like small molecule binding domain LDL57_06575 PF12833 Helix-turn-helix domain LDL57_06585 PF00324 Amino acid permease LDL57_06590 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LDL57_06595 PF00313 'Cold-shock' DNA-binding domain LDL57_06620 PF06146 Phosphate-starvation-inducible E LDL57_06625 PF00072 Response regulator receiver domain LDL57_06625 PF00196 Bacterial regulatory proteins, luxR family LDL57_06630 PF08459 UvrC Helix-hairpin-helix N-terminal LDL57_06630 PF02151 UvrB/uvrC motif LDL57_06630 PF01541 GIY-YIG catalytic domain LDL57_06635 PF01066 CDP-alcohol phosphatidyltransferase LDL57_06730 PF00772 DnaB-like helicase N terminal domain LDL57_06730 PF03796 DnaB-like helicase C terminal domain LDL57_06735 PF03796 DnaB-like helicase C terminal domain LDL57_06735 PF00772 DnaB-like helicase N terminal domain LDL57_06765 PF18755 Restriction Enzyme Adenine Methylase Associated LDL57_06765 PF01555 DNA methylase LDL57_06780 PF00959 Phage lysozyme LDL57_06850 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system LDL57_06860 PF04221 RelB antitoxin LDL57_06865 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LDL57_06925 PF09669 Phage regulatory protein Rha (Phage_pRha) LDL57_06925 PF10549 ORF11CD3 domain LDL57_06950 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LDL57_06960 PF04606 Ogr/Delta-like zinc finger LDL57_06970 PF13981 SopA-like central domain LDL57_06970 PF13979 SopA-like catalytic domain LDL57_07060 PF01791 DeoC/LacD family aldolase LDL57_07065 PF01136 Peptidase family U32 LDL57_07065 PF16325 Peptidase family U32 C-terminal domain LDL57_07070 PF00072 Response regulator receiver domain LDL57_07070 PF00486 Transcriptional regulatory protein, C terminal LDL57_07075 PF00672 HAMP domain LDL57_07075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_07075 PF00512 His Kinase A (phospho-acceptor) domain LDL57_07080 PF00873 AcrB/AcrD/AcrF family LDL57_07085 PF00873 AcrB/AcrD/AcrF family LDL57_07090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL57_07095 PF13981 SopA-like central domain LDL57_07095 PF13979 SopA-like catalytic domain LDL57_07105 PF07690 Major Facilitator Superfamily LDL57_07110 PF00571 CBS domain LDL57_07110 PF01769 Divalent cation transporter LDL57_07110 PF03448 MgtE intracellular N domain LDL57_07115 PF02541 Ppx/GppA phosphatase family LDL57_07120 PF02503 Polyphosphate kinase middle domain LDL57_07120 PF13090 Polyphosphate kinase C-terminal domain 2 LDL57_07120 PF17941 Polyphosphate kinase C-terminal domain 1 LDL57_07120 PF13089 Polyphosphate kinase N-terminal domain LDL57_07130 PF00551 Formyl transferase LDL57_07135 PF02769 AIR synthase related protein, C-terminal domain LDL57_07135 PF00586 AIR synthase related protein, N-terminal domain LDL57_07150 PF00860 Permease family LDL57_07155 PF00308 Bacterial dnaA protein LDL57_07160 PF03960 ArsC family LDL57_07165 PF01435 Peptidase family M48 LDL57_07165 PF07720 Tetratricopeptide repeat LDL57_07175 PF00578 AhpC/TSA family LDL57_07180 PF00701 Dihydrodipicolinate synthetase family LDL57_07185 PF06804 NlpB/DapX lipoprotein LDL57_07190 PF01259 SAICAR synthetase LDL57_07195 PF04228 Putative neutral zinc metallopeptidase LDL57_07200 PF04284 Protein of unknown function (DUF441) LDL57_07205 PF08351 Domain of unknown function (DUF1726) LDL57_07205 PF13718 GNAT acetyltransferase 2 LDL57_07205 PF05127 Helicase LDL57_07205 PF17176 tRNA-binding domain LDL57_07210 PF13980 Uncharacterised protein family (UPF0370) LDL57_07215 PF04304 Protein of unknown function (DUF454) LDL57_07220 PF07687 Peptidase dimerisation domain LDL57_07220 PF01546 Peptidase family M20/M25/M40 LDL57_07225 PF03960 ArsC family LDL57_07230 PF00072 Response regulator receiver domain LDL57_07230 PF00196 Bacterial regulatory proteins, luxR family LDL57_07235 PF03949 Malic enzyme, NAD binding domain LDL57_07235 PF01515 Phosphate acetyl/butaryl transferase LDL57_07235 PF00390 Malic enzyme, N-terminal domain LDL57_07240 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LDL57_07240 PF00326 Prolyl oligopeptidase family LDL57_07245 PF02601 Exonuclease VII, large subunit LDL57_07245 PF13742 OB-fold nucleic acid binding domain LDL57_07255 PF00571 CBS domain LDL57_07255 PF00478 IMP dehydrogenase / GMP reductase domain LDL57_07260 PF00958 GMP synthase C terminal domain LDL57_07260 PF00117 Glutamine amidotransferase class-I LDL57_07260 PF02540 NAD synthase LDL57_07265 PF18416 N-acetylglucosamine binding protein domain 2 LDL57_07265 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LDL57_07275 PF05872 Bacterial protein of unknown function (DUF853) LDL57_07280 PF00793 DAHP synthetase I family LDL57_07290 PF00391 PEP-utilising enzyme, mobile domain LDL57_07290 PF02896 PEP-utilising enzyme, TIM barrel domain LDL57_07290 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LDL57_07295 PF00005 ABC transporter LDL57_07300 PF01032 FecCD transport family LDL57_07305 PF01497 Periplasmic binding protein LDL57_07310 PF05171 Haemin-degrading HemS.ChuX domain LDL57_07315 PF00593 TonB dependent receptor LDL57_07315 PF07715 TonB-dependent Receptor Plug Domain LDL57_07320 PF10636 Hemin uptake protein hemP LDL57_07325 PF01594 AI-2E family transporter LDL57_07335 PF03061 Thioesterase superfamily LDL57_07340 PF01521 Iron-sulphur cluster biosynthesis LDL57_07345 PF01458 Uncharacterized protein family (UPF0051) LDL57_07350 PF00005 ABC transporter LDL57_07355 PF01458 Uncharacterized protein family (UPF0051) LDL57_07360 PF00266 Aminotransferase class-V LDL57_07365 PF02657 Fe-S metabolism associated domain LDL57_07370 PF03734 L,D-transpeptidase catalytic domain LDL57_07370 PF17969 L,D-transpeptidase C-terminal domain LDL57_07370 PF01476 LysM domain LDL57_07375 PF04728 Lipoprotein leucine-zipper LDL57_07380 PF00224 Pyruvate kinase, barrel domain LDL57_07380 PF02887 Pyruvate kinase, alpha/beta domain LDL57_07395 PF00462 Glutaredoxin LDL57_07400 PF00929 Exonuclease LDL57_07405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LDL57_07410 PF01047 MarR family LDL57_07415 PF05433 Glycine zipper 2TM domain LDL57_07425 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LDL57_07425 PF01243 Pyridoxamine 5'-phosphate oxidase LDL57_07430 PF01479 S4 domain LDL57_07430 PF00579 tRNA synthetases class I (W and Y) LDL57_07435 PF08543 Phosphomethylpyrimidine kinase LDL57_07440 PF02798 Glutathione S-transferase, N-terminal domain LDL57_07440 PF00043 Glutathione S-transferase, C-terminal domain LDL57_07445 PF07411 Domain of unknown function (DUF1508) LDL57_07475 PF00005 ABC transporter LDL57_07480 PF00005 ABC transporter LDL57_07480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDL57_07485 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_07485 PF12911 N-terminal TM domain of oligopeptide transport permease C LDL57_07490 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_07495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDL57_07500 PF02954 Bacterial regulatory protein, Fis family LDL57_07500 PF00158 Sigma-54 interaction domain LDL57_07505 PF04012 PspA/IM30 family LDL57_07510 PF06667 Phage shock protein B LDL57_07515 PF04024 PspC domain LDL57_07525 PF04317 YcjX-like family, DUF463 LDL57_07530 PF05128 Domain of unknown function (DUF697) LDL57_07535 PF18024 Helix-turn-helix domain LDL57_07535 PF00158 Sigma-54 interaction domain LDL57_07540 PF08534 Redoxin LDL57_07550 PF13505 Outer membrane protein beta-barrel domain LDL57_07555 PF01544 CorA-like Mg2+ transporter protein LDL57_07565 PF00893 Small Multidrug Resistance protein LDL57_07570 PF02600 Disulfide bond formation protein DsbB LDL57_07575 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LDL57_07580 PF07840 FadR C-terminal domain LDL57_07580 PF00392 Bacterial regulatory proteins, gntR family LDL57_07590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDL57_07590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDL57_07595 PF01641 SelR domain LDL57_07600 PF07023 Protein of unknown function (DUF1315) LDL57_07605 PF00857 Isochorismatase family LDL57_07610 PF17763 Glutaminase/Asparaginase C-terminal domain LDL57_07610 PF00710 Asparaginase, N-terminal LDL57_07615 PF01343 Peptidase family S49 LDL57_07620 PF00881 Nitroreductase family LDL57_07625 PF00586 AIR synthase related protein, N-terminal domain LDL57_07625 PF02769 AIR synthase related protein, C-terminal domain LDL57_07630 PF01131 DNA topoisomerase LDL57_07630 PF01751 Toprim domain LDL57_07635 PF03372 Endonuclease/Exonuclease/phosphatase family LDL57_07640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_07640 PF03466 LysR substrate binding domain LDL57_07645 PF01842 ACT domain LDL57_07645 PF00551 Formyl transferase LDL57_07650 PF00072 Response regulator receiver domain LDL57_07655 PF00483 Nucleotidyl transferase LDL57_07660 PF00816 H-NS histone family LDL57_07665 PF00265 Thymidine kinase LDL57_07670 PF00465 Iron-containing alcohol dehydrogenase LDL57_07670 PF00171 Aldehyde dehydrogenase family LDL57_07675 PF01914 MarC family integral membrane protein LDL57_07680 PF13091 PLD-like domain LDL57_07680 PF13396 Phospholipase_D-nuclease N-terminal LDL57_07685 PF03544 Gram-negative bacterial TonB protein C-terminal LDL57_07690 PF03061 Thioesterase superfamily LDL57_07695 PF04279 Intracellular septation protein A LDL57_07705 PF04972 BON domain LDL57_07710 PF00290 Tryptophan synthase alpha chain LDL57_07715 PF00291 Pyridoxal-phosphate dependent enzyme LDL57_07720 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LDL57_07720 PF00218 Indole-3-glycerol phosphate synthase LDL57_07725 PF02885 Glycosyl transferase family, helical bundle domain LDL57_07725 PF00117 Glutamine amidotransferase class-I LDL57_07725 PF00591 Glycosyl transferase family, a/b domain LDL57_07730 PF02885 Glycosyl transferase family, helical bundle domain LDL57_07730 PF00117 Glutamine amidotransferase class-I LDL57_07730 PF00591 Glycosyl transferase family, a/b domain LDL57_07735 PF04715 Anthranilate synthase component I, N terminal region LDL57_07735 PF00425 chorismate binding enzyme LDL57_07740 PF02811 PHP domain LDL57_07745 PF01300 Telomere recombination LDL57_07750 PF01479 S4 domain LDL57_07750 PF00849 RNA pseudouridylate synthase LDL57_07760 PF00106 short chain dehydrogenase LDL57_07765 PF08496 Peptidase family S49 N-terminal LDL57_07765 PF01343 Peptidase family S49 LDL57_07770 PF01751 Toprim domain LDL57_07770 PF01131 DNA topoisomerase LDL57_07770 PF08272 Topoisomerase I zinc-ribbon-like LDL57_07770 PF01396 Topoisomerase DNA binding C4 zinc finger LDL57_07775 PF00080 Copper/zinc superoxide dismutase (SODC) LDL57_07780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_07780 PF03466 LysR substrate binding domain LDL57_07790 PF00925 GTP cyclohydrolase II LDL57_07795 PF06305 Lipopolysaccharide assembly protein A domain LDL57_07800 PF18073 Rubredoxin metal binding domain LDL57_07805 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LDL57_07810 PF01253 Translation initiation factor SUI1 LDL57_07815 PF05433 Glycine zipper 2TM domain LDL57_07820 PF17876 Cold shock domain LDL57_07820 PF00773 RNB domain LDL57_07820 PF08206 Ribonuclease B OB domain LDL57_07820 PF00575 S1 RNA binding domain LDL57_07825 PF10576 Iron-sulfur binding domain of endonuclease III LDL57_07825 PF00633 Helix-hairpin-helix motif LDL57_07825 PF00730 HhH-GPD superfamily base excision DNA repair protein LDL57_07830 PF02508 Rnf-Nqr subunit, membrane protein LDL57_07835 PF04205 FMN-binding domain LDL57_07840 PF03116 NQR2, RnfD, RnfE family LDL57_07845 PF10531 SLBB domain LDL57_07845 PF13375 RnfC Barrel sandwich hybrid domain LDL57_07845 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LDL57_07845 PF13237 4Fe-4S dicluster domain LDL57_07850 PF04060 Putative Fe-S cluster LDL57_07855 PF02508 Rnf-Nqr subunit, membrane protein LDL57_07860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDL57_07860 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LDL57_07875 PF06097 Bacterial protein of unknown function (DUF945) LDL57_07880 PF01238 Phosphomannose isomerase type I LDL57_07885 PF10415 Fumarase C C-terminus LDL57_07885 PF00206 Lyase LDL57_07890 PF05472 DNA replication terminus site-binding protein (Ter protein) LDL57_07900 PF07690 Major Facilitator Superfamily LDL57_07910 PF00480 ROK family LDL57_07935 PF02611 CDP-diacylglycerol pyrophosphatase LDL57_07960 PF02525 Flavodoxin-like fold LDL57_07965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_07965 PF03466 LysR substrate binding domain LDL57_07970 PF00248 Aldo/keto reductase family LDL57_08000 PF13981 SopA-like central domain LDL57_08000 PF13979 SopA-like catalytic domain LDL57_08005 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL57_08005 PF13192 Thioredoxin domain LDL57_08010 PF00578 AhpC/TSA family LDL57_08010 PF10417 C-terminal domain of 1-Cys peroxiredoxin LDL57_08020 PF14765 Polyketide synthase dehydratase LDL57_08020 PF00550 Phosphopantetheine attachment site LDL57_08020 PF08659 KR domain LDL57_08020 PF16197 Ketoacyl-synthetase C-terminal extension LDL57_08020 PF00109 Beta-ketoacyl synthase, N-terminal domain LDL57_08020 PF02801 Beta-ketoacyl synthase, C-terminal domain LDL57_08020 PF00698 Acyl transferase domain LDL57_08020 PF08240 Alcohol dehydrogenase GroES-like domain LDL57_08035 PF00325 Bacterial regulatory proteins, crp family LDL57_08035 PF00027 Cyclic nucleotide-binding domain LDL57_08040 PF00582 Universal stress protein family LDL57_08050 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LDL57_08050 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LDL57_08050 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LDL57_08055 PF07338 Protein of unknown function (DUF1471) LDL57_08060 PF13520 Amino acid permease LDL57_08065 PF00419 Fimbrial protein LDL57_08075 PF02753 Pili assembly chaperone PapD, C-terminal domain LDL57_08075 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDL57_08080 PF13953 PapC C-terminal domain LDL57_08080 PF13954 PapC N-terminal domain LDL57_08080 PF00577 Outer membrane usher protein LDL57_08090 PF00271 Helicase conserved C-terminal domain LDL57_08090 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LDL57_08090 PF04408 Helicase associated domain (HA2) LDL57_08090 PF11898 Domain of unknown function (DUF3418) LDL57_08090 PF00270 DEAD/DEAH box helicase LDL57_08095 PF07027 Protein of unknown function (DUF1318) LDL57_08105 PF11739 Dicarboxylate transport LDL57_08110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDL57_08110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDL57_08120 PF03692 Putative zinc- or iron-chelating domain LDL57_08125 PF01557 Fumarylacetoacetate (FAA) hydrolase family LDL57_08130 PF13406 Transglycosylase SLT domain LDL57_08135 PF05166 YcgL domain LDL57_08140 PF05209 Septum formation inhibitor MinC, N-terminal domain LDL57_08140 PF03775 Septum formation inhibitor MinC, C-terminal domain LDL57_08145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LDL57_08150 PF03776 Septum formation topological specificity factor MinE LDL57_08165 PF01612 3'-5' exonuclease LDL57_08165 PF00570 HRDC domain LDL57_08170 PF00501 AMP-binding enzyme LDL57_08170 PF13193 AMP-binding enzyme C-terminal domain LDL57_08175 PF03843 Outer membrane lipoprotein Slp family LDL57_08180 PF00814 Glycoprotease family LDL57_08185 PF13307 Helicase C-terminal domain LDL57_08185 PF04851 Type III restriction enzyme, res subunit LDL57_08190 PF01042 Endoribonuclease L-PSP LDL57_08195 PF08548 Peptidase M10 serralysin C terminal LDL57_08195 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LDL57_08195 PF00413 Matrixin LDL57_08200 PF08548 Peptidase M10 serralysin C terminal LDL57_08200 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LDL57_08210 PF18416 N-acetylglucosamine binding protein domain 2 LDL57_08210 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LDL57_08230 PF00893 Small Multidrug Resistance protein LDL57_08235 PF00893 Small Multidrug Resistance protein LDL57_08240 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LDL57_08240 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LDL57_08245 PF01418 Helix-turn-helix domain, rpiR family LDL57_08245 PF01380 SIS domain LDL57_08250 PF00224 Pyruvate kinase, barrel domain LDL57_08250 PF02887 Pyruvate kinase, alpha/beta domain LDL57_08255 PF03279 Bacterial lipid A biosynthesis acyltransferase LDL57_08260 PF01476 LysM domain LDL57_08260 PF08525 Opacity-associated protein A N-terminal motif LDL57_08260 PF01551 Peptidase family M23 LDL57_08265 PF01297 Zinc-uptake complex component A periplasmic LDL57_08270 PF00005 ABC transporter LDL57_08275 PF00950 ABC 3 transport family LDL57_08280 PF13505 Outer membrane protein beta-barrel domain LDL57_08290 PF10548 P22AR C-terminal domain LDL57_08290 PF02498 BRO family, N-terminal domain LDL57_08305 PF03544 Gram-negative bacterial TonB protein C-terminal LDL57_08340 PF07282 Putative transposase DNA-binding domain LDL57_08340 PF12323 Helix-turn-helix domain LDL57_08340 PF01385 Probable transposase LDL57_08375 PF13505 Outer membrane protein beta-barrel domain LDL57_08480 PF03592 Terminase small subunit LDL57_08480 PF10668 Phage terminase small subunit LDL57_08500 PF00959 Phage lysozyme LDL57_08685 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LDL57_08685 PF00589 Phage integrase family LDL57_08690 PF18416 N-acetylglucosamine binding protein domain 2 LDL57_08690 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LDL57_08695 PF17864 RuvB AAA lid domain LDL57_08695 PF05496 Holliday junction DNA helicase RuvB P-loop domain LDL57_08695 PF05491 RuvB C-terminal winged helix domain LDL57_08700 PF01330 RuvA N terminal domain LDL57_08700 PF07499 RuvA, C-terminal domain LDL57_08705 PF02075 Crossover junction endodeoxyribonuclease RuvC LDL57_08710 PF01709 Transcriptional regulator LDL57_08715 PF00293 NUDIX domain LDL57_08720 PF01336 OB-fold nucleic acid binding domain LDL57_08720 PF00152 tRNA synthetases class II (D, K and N) LDL57_08720 PF02938 GAD domain LDL57_08725 PF01124 MAPEG family LDL57_08730 PF13649 Methyltransferase domain LDL57_08735 PF08003 Protein of unknown function (DUF1698) LDL57_08740 PF03932 CutC family LDL57_08745 PF03485 Arginyl tRNA synthetase N terminal domain LDL57_08745 PF05746 DALR anticodon binding domain LDL57_08745 PF00750 tRNA synthetases class I (R) LDL57_08750 PF00356 Bacterial regulatory proteins, lacI family LDL57_08760 PF07690 Major Facilitator Superfamily LDL57_08765 PF00677 Lumazine binding domain LDL57_08770 PF01554 MatE LDL57_08785 PF03023 Lipid II flippase MurJ LDL57_08790 PF13302 Acetyltransferase (GNAT) domain LDL57_08795 PF07690 Major Facilitator Superfamily LDL57_08800 PF07273 Protein of unknown function (DUF1439) LDL57_08805 PF02613 Nitrate reductase delta subunit LDL57_08815 PF16199 Radical_SAM C-terminal domain LDL57_08815 PF04055 Radical SAM superfamily LDL57_08820 PF00793 DAHP synthetase I family LDL57_08825 PF13369 Transglutaminase-like superfamily LDL57_08830 PF13847 Methyltransferase domain LDL57_08830 PF17827 PrmC N-terminal domain LDL57_08835 PF00472 RF-1 domain LDL57_08835 PF03462 PCRF domain LDL57_08840 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LDL57_08840 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LDL57_08840 PF01488 Shikimate / quinate 5-dehydrogenase LDL57_08845 PF03550 Outer membrane lipoprotein LolB LDL57_08850 PF08544 GHMP kinases C terminal LDL57_08850 PF00288 GHMP kinases N terminal domain LDL57_08855 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LDL57_08855 PF14572 Phosphoribosyl synthetase-associated domain LDL57_08860 PF10762 Protein of unknown function (DUF2583) LDL57_08865 PF01195 Peptidyl-tRNA hydrolase LDL57_08870 PF01926 50S ribosome-binding GTPase LDL57_08870 PF06071 Protein of unknown function (DUF933) LDL57_08875 PF11867 Domain of unknown function (DUF3387) LDL57_08875 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LDL57_08875 PF18766 SWI2/SNF2 ATPase LDL57_08885 PF02384 N-6 DNA Methylase LDL57_08895 PF00196 Bacterial regulatory proteins, luxR family LDL57_08915 PF14436 Bacterial EndoU nuclease LDL57_08915 PF05594 Haemagluttinin repeat LDL57_08915 PF13332 Hemagglutinin repeat LDL57_08915 PF04829 Pre-toxin domain with VENN motif LDL57_08915 PF05860 haemagglutination activity domain LDL57_08925 PF02562 PhoH-like protein LDL57_08945 PF12821 Threonine/Serine exporter, ThrE LDL57_08950 PF06738 Putative threonine/serine exporter LDL57_08960 PF00582 Universal stress protein family LDL57_08965 PF10769 Protein of unknown function (DUF2594) LDL57_08970 PF01435 Peptidase family M48 LDL57_08975 PF00595 PDZ domain LDL57_08975 PF03572 Peptidase family S41 LDL57_08975 PF17804 Tail specific protease N-terminal domain LDL57_08975 PF11818 C-terminal domain of tail specific protease (DUF3340) LDL57_08980 PF04352 ProQ/FINO family LDL57_08980 PF17516 ProQ C-terminal domain LDL57_08985 PF13185 GAF domain LDL57_08990 PF07351 Protein of unknown function (DUF1480) LDL57_08995 PF10709 Protein of unknown function (DUF2511) LDL57_09000 PF00210 Ferritin-like domain LDL57_09005 PF06440 DNA polymerase III, theta subunit LDL57_09010 PF13995 YebF-like protein LDL57_09015 PF03701 Uncharacterised protein family (UPF0181) LDL57_09020 PF04715 Anthranilate synthase component I, N terminal region LDL57_09020 PF00425 chorismate binding enzyme LDL57_09025 PF00293 NUDIX domain LDL57_09030 PF03315 Serine dehydratase beta chain LDL57_09030 PF03313 Serine dehydratase alpha chain LDL57_09035 PF03610 PTS system fructose IIA component LDL57_09035 PF03830 PTS system sorbose subfamily IIB component LDL57_09040 PF03609 PTS system sorbose-specific iic component LDL57_09045 PF03613 PTS system mannose/fructose/sorbose family IID component LDL57_09050 PF06173 Protein of unknown function (DUF986) LDL57_09055 PF02659 Putative manganese efflux pump LDL57_09060 PF12833 Helix-turn-helix domain LDL57_09065 PF03099 Biotin/lipoate A/B protein ligase family LDL57_09065 PF10437 Bacterial lipoate protein ligase C-terminus LDL57_09070 PF00877 NlpC/P60 family LDL57_09080 PF00892 EamA-like transporter family LDL57_09085 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LDL57_09090 PF01522 Polysaccharide deacetylase LDL57_09095 PF00551 Formyl transferase LDL57_09095 PF01370 NAD dependent epimerase/dehydratase family LDL57_09095 PF02911 Formyl transferase, C-terminal domain LDL57_09100 PF00535 Glycosyl transferase family 2 LDL57_09105 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LDL57_09110 PF00216 Bacterial DNA-binding protein LDL57_09115 PF03483 B3/4 domain LDL57_09115 PF03147 Ferredoxin-fold anticodon binding domain LDL57_09115 PF01588 Putative tRNA binding domain LDL57_09115 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LDL57_09115 PF03484 tRNA synthetase B5 domain LDL57_09120 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LDL57_09120 PF01409 tRNA synthetases class II core domain (F) LDL57_09130 PF00453 Ribosomal protein L20 LDL57_09135 PF01632 Ribosomal protein L35 LDL57_09140 PF05198 Translation initiation factor IF-3, N-terminal domain LDL57_09140 PF00707 Translation initiation factor IF-3, C-terminal domain LDL57_09145 PF03129 Anticodon binding domain LDL57_09145 PF02824 TGS domain LDL57_09145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDL57_09145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LDL57_09150 PF01464 Transglycosylase SLT domain LDL57_09155 PF01297 Zinc-uptake complex component A periplasmic LDL57_09160 PF00005 ABC transporter LDL57_09165 PF00950 ABC 3 transport family LDL57_09170 PF00950 ABC 3 transport family LDL57_09175 PF14002 YniB-like protein LDL57_09180 PF13419 Haloacid dehalogenase-like hydrolase LDL57_09185 PF04307 LexA-binding, inner membrane-associated putative hydrolase LDL57_09190 PF00375 Sodium:dicarboxylate symporter family LDL57_09195 PF08543 Phosphomethylpyrimidine kinase LDL57_09215 PF01965 DJ-1/PfpI family LDL57_09220 PF01817 Chorismate mutase type II LDL57_09240 PF02613 Nitrate reductase delta subunit LDL57_09245 PF04976 DMSO reductase anchor subunit (DmsC) LDL57_09250 PF12800 4Fe-4S binding domain LDL57_09250 PF13247 4Fe-4S dicluster domain LDL57_09255 PF00384 Molybdopterin oxidoreductase LDL57_09255 PF01568 Molydopterin dinucleotide binding domain LDL57_09255 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LDL57_09260 PF13439 Glycosyltransferase Family 4 LDL57_09260 PF00534 Glycosyl transferases group 1 LDL57_09270 PF08437 Glycosyl transferase family 8 C-terminal LDL57_09270 PF01501 Glycosyl transferase family 8 LDL57_09275 PF00248 Aldo/keto reductase family LDL57_09280 PF00939 Sodium:sulfate symporter transmembrane region LDL57_09285 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LDL57_09285 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LDL57_09290 PF00571 CBS domain LDL57_09290 PF03471 Transporter associated domain LDL57_09290 PF03741 Integral membrane protein TerC family LDL57_09295 PF05170 AsmA family LDL57_09300 PF00692 dUTPase LDL57_09305 PF00485 Phosphoribulokinase / Uridine kinase family LDL57_09310 PF10609 NUBPL iron-transfer P-loop NTPase LDL57_09315 PF09334 tRNA synthetases class I (M) LDL57_09315 PF01588 Putative tRNA binding domain LDL57_09320 PF03788 LrgA family LDL57_09325 PF04172 LrgB-like family LDL57_09330 PF02698 DUF218 domain LDL57_09340 PF01227 GTP cyclohydrolase I LDL57_09345 PF00578 AhpC/TSA family LDL57_09365 PF00994 Probable molybdopterin binding domain LDL57_09365 PF03454 MoeA C-terminal region (domain IV) LDL57_09365 PF03453 MoeA N-terminal region (domain I and II) LDL57_09370 PF00899 ThiF family LDL57_09375 PF03641 Possible lysine decarboxylase LDL57_09380 PF00892 EamA-like transporter family LDL57_09385 PF00210 Ferritin-like domain LDL57_09390 PF03831 PhnA domain LDL57_09390 PF08274 PhnA Zinc-Ribbon LDL57_09400 PF00581 Rhodanese-like domain LDL57_09405 PF04226 Transglycosylase associated protein LDL57_09410 PF01207 Dihydrouridine synthase (Dus) LDL57_09415 PF00270 DEAD/DEAH box helicase LDL57_09415 PF00271 Helicase conserved C-terminal domain LDL57_09420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL57_09425 PF00005 ABC transporter LDL57_09445 PF02391 MoaE protein LDL57_09450 PF02597 ThiS family LDL57_09455 PF01967 MoaC family LDL57_09460 PF06463 Molybdenum Cofactor Synthesis C LDL57_09460 PF04055 Radical SAM superfamily LDL57_09465 PF01933 Uncharacterised protein family UPF0052 LDL57_09470 PF00271 Helicase conserved C-terminal domain LDL57_09470 PF04851 Type III restriction enzyme, res subunit LDL57_09470 PF02151 UvrB/uvrC motif LDL57_09470 PF12344 Ultra-violet resistance protein B LDL57_09470 PF17757 UvrB interaction domain LDL57_09480 PF08241 Methyltransferase domain LDL57_09485 PF00155 Aminotransferase class I and II LDL57_09490 PF06968 Biotin and Thiamin Synthesis associated domain LDL57_09490 PF04055 Radical SAM superfamily LDL57_09495 PF00202 Aminotransferase class-III LDL57_09500 PF10282 Lactonase, 7-bladed beta-propeller LDL57_09510 PF18416 N-acetylglucosamine binding protein domain 2 LDL57_09510 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LDL57_09520 PF00005 ABC transporter LDL57_09520 PF03459 TOBE domain LDL57_09525 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_09535 PF00324 Amino acid permease LDL57_09540 PF00474 Sodium:solute symporter family LDL57_09550 PF02899 Phage integrase, N-terminal SAM-like domain LDL57_09555 PF04542 Sigma-70 region 2 LDL57_09555 PF04539 Sigma-70 region 3 LDL57_09555 PF04545 Sigma-70, region 4 LDL57_09560 PF00700 Bacterial flagellin C-terminal helical region LDL57_09560 PF00669 Bacterial flagellin N-terminal helical region LDL57_09565 PF00700 Bacterial flagellin C-terminal helical region LDL57_09565 PF00669 Bacterial flagellin N-terminal helical region LDL57_09570 PF00700 Bacterial flagellin C-terminal helical region LDL57_09570 PF00669 Bacterial flagellin N-terminal helical region LDL57_09575 PF07196 Flagellin hook IN motif LDL57_09575 PF02465 Flagellar hook-associated protein 2 N-terminus LDL57_09585 PF05400 Flagellar protein FliT LDL57_09590 PF02049 Flagellar hook-basal body complex protein FliE LDL57_09600 PF01706 FliG C-terminal domain LDL57_09600 PF14842 FliG N-terminal domain LDL57_09600 PF14841 FliG middle domain LDL57_09610 PF02108 Flagellar assembly protein FliH LDL57_09615 PF18269 T3SS EscN ATPase C-terminal domain LDL57_09615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDL57_09620 PF02050 Flagellar FliJ protein LDL57_09625 PF02120 Flagellar hook-length control protein FliK LDL57_09630 PF03748 Flagellar basal body-associated protein FliL LDL57_09635 PF02154 Flagellar motor switch protein FliM LDL57_09635 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDL57_09640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDL57_09640 PF16973 Flagellar motor switch protein FliN N-terminal LDL57_09645 PF04347 Flagellar biosynthesis protein, FliO LDL57_09650 PF00813 FliP family LDL57_09655 PF01313 Bacterial export proteins, family 3 LDL57_09660 PF01311 Bacterial export proteins, family 1 LDL57_09665 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDL57_09670 PF00669 Bacterial flagellin N-terminal helical region LDL57_09675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDL57_09675 PF00460 Flagella basal body rod protein LDL57_09680 PF10135 Rod binding protein LDL57_09680 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LDL57_09685 PF02119 Flagellar P-ring protein LDL57_09690 PF02107 Flagellar L-ring protein LDL57_09695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDL57_09695 PF00460 Flagella basal body rod protein LDL57_09700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDL57_09700 PF00460 Flagella basal body rod protein LDL57_09705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDL57_09705 PF00460 Flagella basal body rod protein LDL57_09705 PF07559 Flagellar basal body protein FlaE LDL57_09710 PF13861 FlgD Tudor-like domain LDL57_09710 PF13860 FlgD Ig-like domain LDL57_09710 PF03963 Flagellar hook capping protein - N-terminal region LDL57_09715 PF00460 Flagella basal body rod protein LDL57_09715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LDL57_09720 PF00460 Flagella basal body rod protein LDL57_09725 PF13144 Chaperone for flagella basal body P-ring formation LDL57_09725 PF17656 FlgA N-terminal domain LDL57_09735 PF05130 FlgN protein LDL57_09750 PF00771 FHIPEP family LDL57_09775 PF04344 Chemotaxis phosphatase, CheZ LDL57_09780 PF00072 Response regulator receiver domain LDL57_09785 PF01339 CheB methylesterase LDL57_09785 PF00072 Response regulator receiver domain LDL57_09790 PF01739 CheR methyltransferase, SAM binding domain LDL57_09790 PF03705 CheR methyltransferase, all-alpha domain LDL57_09795 PF02203 Tar ligand binding domain homologue LDL57_09795 PF00672 HAMP domain LDL57_09795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LDL57_09810 PF01584 CheW-like domain LDL57_09815 PF01584 CheW-like domain LDL57_09815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_09815 PF01627 Hpt domain LDL57_09815 PF02895 Signal transducing histidine kinase, homodimeric domain LDL57_09815 PF09078 CheY binding LDL57_09820 PF13677 Membrane MotB of proton-channel complex MotA/MotB LDL57_09820 PF00691 OmpA family LDL57_09825 PF01618 MotA/TolQ/ExbB proton channel family LDL57_09835 PF05247 Flagellar transcriptional activator (FlhD) LDL57_09840 PF10781 Dextransucrase DSRB LDL57_09845 PF00313 'Cold-shock' DNA-binding domain LDL57_09870 PF01979 Amidohydrolase family LDL57_09880 PF03279 Bacterial lipid A biosynthesis acyltransferase LDL57_09885 PF00854 POT family LDL57_09890 PF01625 Peptide methionine sulfoxide reductase LDL57_09905 PF00328 Histidine phosphatase superfamily (branch 2) LDL57_09920 PF13439 Glycosyltransferase Family 4 LDL57_09920 PF00534 Glycosyl transferases group 1 LDL57_09930 PF01522 Polysaccharide deacetylase LDL57_09945 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LDL57_09990 PF04358 DsrC like protein LDL57_09995 PF00708 Acylphosphatase LDL57_10000 PF08755 Hemimethylated DNA-binding protein YccV like LDL57_10005 PF13380 CoA binding domain LDL57_10010 PF02142 MGS-like domain LDL57_10015 PF12462 DNA helicase IV / RNA helicase N terminal LDL57_10015 PF13361 UvrD-like helicase C-terminal domain LDL57_10015 PF00580 UvrD/REP helicase N-terminal domain LDL57_10020 PF12805 FUSC-like inner membrane protein yccS LDL57_10025 PF04994 TfoX C-terminal domain LDL57_10025 PF04993 TfoX N-terminal domain LDL57_10030 PF03846 Cell division inhibitor SulA LDL57_10035 PF00691 OmpA family LDL57_10035 PF01389 OmpA-like transmembrane domain LDL57_10040 PF06303 MatP N-terminal domain LDL57_10040 PF17414 MatP C-terminal ribbon-helix-helix domain LDL57_10045 PF13654 AAA domain LDL57_10045 PF05362 Lon protease (S16) C-terminal proteolytic domain LDL57_10050 PF07977 FabA-like domain LDL57_10055 PF03886 ABC-type transport auxiliary lipoprotein component LDL57_10060 PF02470 MlaD protein LDL57_10065 PF04403 Paraquat-inducible protein A LDL57_10070 PF00005 ABC transporter LDL57_10070 PF16326 ABC transporter C-terminal domain LDL57_10070 PF12848 ABC transporter LDL57_10075 PF02926 THUMP domain LDL57_10075 PF10672 S-adenosylmethionine-dependent methyltransferase LDL57_10075 PF01170 Putative RNA methylase family UPF0020 LDL57_10080 PF03473 MOSC domain LDL57_10080 PF03476 MOSC N-terminal beta barrel domain LDL57_10080 PF00111 2Fe-2S iron-sulfur cluster binding domain LDL57_10085 PF07126 Cell-division protein ZapC LDL57_10090 PF01180 Dihydroorotate dehydrogenase LDL57_10100 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LDL57_10100 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LDL57_10105 PF00152 tRNA synthetases class II (D, K and N) LDL57_10105 PF01336 OB-fold nucleic acid binding domain LDL57_10110 PF00267 Gram-negative porin LDL57_10115 PF00155 Aminotransferase class I and II LDL57_10120 PF00753 Metallo-beta-lactamase superfamily LDL57_10125 PF05951 Bacterial protein of unknown function (DUF882) LDL57_10130 PF01471 Putative peptidoglycan binding domain LDL57_10130 PF03734 L,D-transpeptidase catalytic domain LDL57_10135 PF04310 MukB N-terminal LDL57_10135 PF16330 MukB hinge domain LDL57_10140 PF04288 MukE-like family LDL57_10145 PF03882 MukF winged-helix domain LDL57_10145 PF17193 MukF C-terminal domain LDL57_10145 PF17192 MukF middle domain LDL57_10150 PF13847 Methyltransferase domain LDL57_10155 PF02698 DUF218 domain LDL57_10160 PF02348 Cytidylyltransferase LDL57_10165 PF03966 Trm112p-like protein LDL57_10170 PF00313 'Cold-shock' DNA-binding domain LDL57_10175 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LDL57_10180 PF00664 ABC transporter transmembrane region LDL57_10180 PF00005 ABC transporter LDL57_10190 PF00216 Bacterial DNA-binding protein LDL57_10195 PF00575 S1 RNA binding domain LDL57_10200 PF02224 Cytidylate kinase LDL57_10205 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LDL57_10210 PF00266 Aminotransferase class-V LDL57_10215 PF17763 Glutaminase/Asparaginase C-terminal domain LDL57_10215 PF00710 Asparaginase, N-terminal LDL57_10220 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LDL57_10220 PF18381 YcaO cyclodehydratase C-terminal domain LDL57_10225 PF01226 Formate/nitrite transporter LDL57_10230 PF01228 Glycine radical LDL57_10230 PF02901 Pyruvate formate lyase-like LDL57_10235 PF04055 Radical SAM superfamily LDL57_10245 PF18807 Tripartite Tc toxins repeat LDL57_10245 PF05785 Rho-activating domain of cytotoxic necrotizing factor LDL57_10285 PF01320 Colicin immunity protein / pyocin immunity protein LDL57_10290 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LDL57_10295 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LDL57_10300 PF02403 Seryl-tRNA synthetase N-terminal domain LDL57_10300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDL57_10305 PF12002 MgsA AAA+ ATPase C terminal LDL57_10305 PF16193 AAA C-terminal domain LDL57_10305 PF00004 ATPase family associated with various cellular activities (AAA) LDL57_10310 PF03548 Outer membrane lipoprotein carrier protein LolA LDL57_10315 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LDL57_10315 PF17854 FtsK alpha domain LDL57_10315 PF09397 Ftsk gamma domain LDL57_10315 PF01580 FtsK/SpoIIIE family LDL57_10320 PF01037 Lrp/AsnC ligand binding domain LDL57_10325 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL57_10330 PF00664 ABC transporter transmembrane region LDL57_10330 PF00005 ABC transporter LDL57_10335 PF00005 ABC transporter LDL57_10335 PF00664 ABC transporter transmembrane region LDL57_10340 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LDL57_10345 PF01176 Translation initiation factor 1A / IF-1 LDL57_10350 PF00004 ATPase family associated with various cellular activities (AAA) LDL57_10350 PF07724 AAA domain (Cdc48 subfamily) LDL57_10350 PF17871 AAA lid domain LDL57_10350 PF02861 Clp amino terminal domain, pathogenicity island component LDL57_10350 PF10431 C-terminal, D2-small domain, of ClpB protein LDL57_10355 PF02617 ATP-dependent Clp protease adaptor protein ClpS LDL57_10360 PF00313 'Cold-shock' DNA-binding domain LDL57_10365 PF00005 ABC transporter LDL57_10365 PF02687 FtsX-like permease family LDL57_10365 PF12704 MacB-like periplasmic core domain LDL57_10370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL57_10375 PF11398 Protein of unknown function (DUF2813) LDL57_10380 PF03956 Lysine exporter LysO LDL57_10390 PF00005 ABC transporter LDL57_10395 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDL57_10400 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_10405 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_10415 PF10722 Putative bacterial sensory transduction regulator LDL57_10425 PF00462 Glutaredoxin LDL57_10430 PF01894 Uncharacterised protein family UPF0047 LDL57_10435 PF01569 PAP2 superfamily LDL57_10445 PF03313 Serine dehydratase alpha chain LDL57_10445 PF03315 Serine dehydratase beta chain LDL57_10455 PF07943 Penicillin-binding protein 5, C-terminal domain LDL57_10455 PF00768 D-alanyl-D-alanine carboxypeptidase LDL57_10460 PF01370 NAD dependent epimerase/dehydratase family LDL57_10465 PF00465 Iron-containing alcohol dehydrogenase LDL57_10470 PF10766 Multidrug efflux pump-associated protein AcrZ LDL57_10485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_10485 PF03459 TOBE domain LDL57_10500 PF09134 Invasin, domain 3 LDL57_10500 PF02369 Bacterial Ig-like domain (group 1) LDL57_10500 PF11924 Inverse autotransporter, beta-domain LDL57_10500 PF07979 Intimin C-type lectin domain LDL57_10510 PF00300 Histidine phosphatase superfamily (branch 1) LDL57_10515 PF00793 DAHP synthetase I family LDL57_10520 PF04973 Nicotinamide mononucleotide transporter LDL57_10550 PF13174 Tetratricopeptide repeat LDL57_10550 PF16331 TolA binding protein trimerisation LDL57_10555 PF00691 OmpA family LDL57_10560 PF07676 WD40-like Beta Propeller Repeat LDL57_10560 PF04052 TolB amino-terminal domain LDL57_10565 PF06519 TolA C-terminal LDL57_10565 PF06519 TolA C-terminal LDL57_10570 PF02472 Biopolymer transport protein ExbD/TolR LDL57_10575 PF01618 MotA/TolQ/ExbB proton channel family LDL57_10580 PF03061 Thioesterase superfamily LDL57_10590 PF08173 Membrane bound YbgT-like protein LDL57_10595 PF02322 Cytochrome bd terminal oxidase subunit II LDL57_10600 PF01654 Cytochrome bd terminal oxidase subunit I LDL57_10610 PF02629 CoA binding domain LDL57_10610 PF00549 CoA-ligase LDL57_10615 PF08442 ATP-grasp domain LDL57_10615 PF00549 CoA-ligase LDL57_10625 PF16078 2-oxoglutarate dehydrogenase N-terminus LDL57_10625 PF00676 Dehydrogenase E1 component LDL57_10625 PF16870 2-oxoglutarate dehydrogenase C-terminal LDL57_10625 PF02779 Transketolase, pyrimidine binding domain LDL57_10630 PF13085 2Fe-2S iron-sulfur cluster binding domain LDL57_10635 PF00890 FAD binding domain LDL57_10635 PF02910 Fumarate reductase flavoprotein C-term LDL57_10640 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LDL57_10645 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LDL57_10650 PF00285 Citrate synthase, C-terminal domain LDL57_10655 PF01784 NIF3 (NGG1p interacting factor 3) LDL57_10660 PF10725 Protein of unknown function (DUF2517) LDL57_10685 PF13493 Domain of unknown function (DUF4118) LDL57_10685 PF13492 GAF domain LDL57_10685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_10685 PF00512 His Kinase A (phospho-acceptor) domain LDL57_10685 PF02702 Osmosensitive K+ channel His kinase sensor domain LDL57_10690 PF00072 Response regulator receiver domain LDL57_10690 PF00486 Transcriptional regulatory protein, C terminal LDL57_10695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDL57_10695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDL57_10695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDL57_10695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDL57_10700 PF17206 SeqA protein N-terminal domain LDL57_10700 PF03925 SeqA protein C-terminal domain LDL57_10705 PF12697 Alpha/beta hydrolase family LDL57_10720 PF00664 ABC transporter transmembrane region LDL57_10720 PF00005 ABC transporter LDL57_10720 PF03412 Peptidase C39 family LDL57_10725 PF01402 Ribbon-helix-helix protein, copG family LDL57_10730 PF00258 Flavodoxin LDL57_10735 PF01475 Ferric uptake regulator family LDL57_10750 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDL57_10750 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LDL57_10755 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDL57_10755 PF00367 phosphotransferase system, EIIB LDL57_10755 PF02378 Phosphotransferase system, EIIC LDL57_10760 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LDL57_10765 PF01979 Amidohydrolase family LDL57_10805 PF01494 FAD binding domain LDL57_10810 PF00919 Uncharacterized protein family UPF0004 LDL57_10810 PF01938 TRAM domain LDL57_10810 PF04055 Radical SAM superfamily LDL57_10815 PF02562 PhoH-like protein LDL57_10820 PF02130 Uncharacterized protein family UPF0054 LDL57_10825 PF00571 CBS domain LDL57_10825 PF03471 Transporter associated domain LDL57_10830 PF00795 Carbon-nitrogen hydrolase LDL57_10835 PF00005 ABC transporter LDL57_10840 PF08264 Anticodon-binding domain of tRNA LDL57_10840 PF00133 tRNA synthetases class I (I, L, M and V) LDL57_10840 PF13603 Leucyl-tRNA synthetase, Domain 2 LDL57_10845 PF04390 Lipopolysaccharide-assembly LDL57_10850 PF06144 DNA polymerase III, delta subunit LDL57_10850 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LDL57_10855 PF01467 Cytidylyltransferase-like LDL57_10865 PF02590 Predicted SPOUT methyltransferase LDL57_10870 PF03717 Penicillin-binding Protein dimerisation domain LDL57_10870 PF00905 Penicillin binding protein transpeptidase domain LDL57_10875 PF01098 Cell cycle protein LDL57_10880 PF03330 Lytic transglycolase LDL57_10880 PF05036 Sporulation related domain LDL57_10885 PF07943 Penicillin-binding protein 5, C-terminal domain LDL57_10885 PF00768 D-alanyl-D-alanine carboxypeptidase LDL57_10890 PF04359 Protein of unknown function (DUF493) LDL57_10900 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LDL57_10900 PF04055 Radical SAM superfamily LDL57_10905 PF00313 'Cold-shock' DNA-binding domain LDL57_10910 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LDL57_10910 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDL57_10920 PF07972 NrdI Flavodoxin like LDL57_10925 PF02867 Ribonucleotide reductase, barrel domain LDL57_10925 PF00317 Ribonucleotide reductase, all-alpha domain LDL57_10925 PF08343 Ribonucleotide reductase N-terminal LDL57_10930 PF00268 Ribonucleotide reductase, small chain LDL57_10935 PF00571 CBS domain LDL57_10935 PF00005 ABC transporter LDL57_10940 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_10945 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LDL57_10950 PF01047 MarR family LDL57_10955 PF00529 HlyD membrane-fusion protein of T1SS LDL57_10955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL57_10960 PF07690 Major Facilitator Superfamily LDL57_10965 PF00588 SpoU rRNA Methylase family LDL57_10965 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDL57_10990 PF00583 Acetyltransferase (GNAT) family LDL57_10990 PF13380 CoA binding domain LDL57_10990 PF13607 Succinyl-CoA ligase like flavodoxin domain LDL57_10995 PF13091 PLD-like domain LDL57_11020 PF10431 C-terminal, D2-small domain, of ClpB protein LDL57_11020 PF07724 AAA domain (Cdc48 subfamily) LDL57_11020 PF00004 ATPase family associated with various cellular activities (AAA) LDL57_11020 PF02861 Clp amino terminal domain, pathogenicity island component LDL57_11020 PF17871 AAA lid domain LDL57_11025 PF02578 Multi-copper polyphenol oxidoreductase laccase LDL57_11030 PF00849 RNA pseudouridylate synthase LDL57_11030 PF01479 S4 domain LDL57_11035 PF13525 Outer membrane lipoprotein LDL57_11040 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LDL57_11050 PF01817 Chorismate mutase type II LDL57_11050 PF02153 Prephenate dehydrogenase LDL57_11075 PF01750 Hydrogenase maturation protease LDL57_11080 PF07450 Formate hydrogenlyase maturation protein HycH LDL57_11085 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LDL57_11090 PF12838 4Fe-4S dicluster domain LDL57_11095 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LDL57_11095 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LDL57_11095 PF00374 Nickel-dependent hydrogenase LDL57_11100 PF00146 NADH dehydrogenase LDL57_11105 PF00361 Proton-conducting membrane transporter LDL57_11110 PF13247 4Fe-4S dicluster domain LDL57_11120 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LDL57_11125 PF02492 CobW/HypB/UreG, nucleotide-binding domain LDL57_11130 PF01455 HupF/HypC family LDL57_11135 PF01924 Hydrogenase formation hypA family LDL57_11140 PF02769 AIR synthase related protein, C-terminal domain LDL57_11140 PF00586 AIR synthase related protein, N-terminal domain LDL57_11145 PF01590 GAF domain LDL57_11145 PF00158 Sigma-54 interaction domain LDL57_11175 PF01483 Proprotein convertase P-domain LDL57_11175 PF00082 Subtilase family LDL57_11180 PF16363 GDP-mannose 4,6 dehydratase LDL57_11190 PF00582 Universal stress protein family LDL57_11195 PF03974 Ecotin LDL57_11200 PF04325 Protein of unknown function (DUF465) LDL57_11215 PF12838 4Fe-4S dicluster domain LDL57_11215 PF00037 4Fe-4S binding domain LDL57_11235 PF05932 Tir chaperone protein (CesT) family LDL57_11250 PF07720 Tetratricopeptide repeat LDL57_11255 PF04792 V antigen (LcrV) protein LDL57_11280 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDL57_11280 PF18269 T3SS EscN ATPase C-terminal domain LDL57_11280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDL57_11295 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDL57_11300 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LDL57_11305 PF00813 FliP family LDL57_11310 PF01313 Bacterial export proteins, family 3 LDL57_11315 PF01311 Bacterial export proteins, family 1 LDL57_11325 PF12833 Helix-turn-helix domain LDL57_11335 PF00263 Bacterial type II and III secretion system protein LDL57_11335 PF03958 Bacterial type II/III secretion system short domain LDL57_11340 PF00263 Bacterial type II and III secretion system protein LDL57_11340 PF03958 Bacterial type II/III secretion system short domain LDL57_11345 PF16697 Inner membrane component of T3SS, cytoplasmic domain LDL57_11345 PF16693 Inner membrane component of T3SS, periplasmic domain LDL57_11360 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF LDL57_11375 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI LDL57_11380 PF01514 Secretory protein of YscJ/FliF family LDL57_11390 PF02108 Flagellar assembly protein FliH LDL57_11395 PF04338 Protein of unknown function, DUF481 LDL57_11400 PF00106 short chain dehydrogenase LDL57_11405 PF00455 DeoR C terminal sensor domain LDL57_11405 PF08220 DeoR-like helix-turn-helix domain LDL57_11410 PF08013 Tagatose 6 phosphate kinase LDL57_11415 PF01380 SIS domain LDL57_11420 PF03830 PTS system sorbose subfamily IIB component LDL57_11425 PF03609 PTS system sorbose-specific iic component LDL57_11430 PF03613 PTS system mannose/fructose/sorbose family IID component LDL57_11440 PF01116 Fructose-bisphosphate aldolase class-II LDL57_11465 PF07634 RtxA repeat LDL57_11465 PF12146 Serine aminopeptidase, S33 LDL57_11465 PF11713 Peptidase C80 family LDL57_11465 PF11647 Membrane Localization Domain LDL57_11465 PF16671 Actin cross-linking domain LDL57_11485 PF02677 Epoxyqueuosine reductase QueH LDL57_11490 PF00152 tRNA synthetases class II (D, K and N) LDL57_11490 PF01336 OB-fold nucleic acid binding domain LDL57_11500 PF17768 RecJ OB domain LDL57_11500 PF02272 DHHA1 domain LDL57_11500 PF01368 DHH family LDL57_11505 PF13098 Thioredoxin-like domain LDL57_11505 PF10411 Disulfide bond isomerase protein N-terminus LDL57_11510 PF00589 Phage integrase family LDL57_11510 PF02899 Phage integrase, N-terminal SAM-like domain LDL57_11525 PF00258 Flavodoxin LDL57_11530 PF07254 Membrane-bound toxin component of toxin-antitoxin system LDL57_11535 PF03937 Flavinator of succinate dehydrogenase LDL57_11540 PF01571 Aminomethyltransferase folate-binding domain LDL57_11560 PF01571 Aminomethyltransferase folate-binding domain LDL57_11560 PF08669 Glycine cleavage T-protein C-terminal barrel domain LDL57_11565 PF01494 FAD binding domain LDL57_11570 PF01494 FAD binding domain LDL57_11575 PF00557 Metallopeptidase family M24 LDL57_11575 PF05195 Aminopeptidase P, N-terminal domain LDL57_11580 PF03695 Uncharacterised protein family (UPF0149) LDL57_11585 PF05164 Cell division protein ZapA LDL57_11595 PF01812 5-formyltetrahydrofolate cyclo-ligase family LDL57_11605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDL57_11605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDL57_11605 PF01842 ACT domain LDL57_11610 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LDL57_11615 PF03466 LysR substrate binding domain LDL57_11615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_11635 PF04402 Protein of unknown function (DUF541) LDL57_11640 PF05552 Conserved TM helix LDL57_11640 PF00924 Mechanosensitive ion channel LDL57_11645 PF06062 Uncharacterised protein family (UPF0231) LDL57_11660 PF09669 Phage regulatory protein Rha (Phage_pRha) LDL57_11660 PF10549 ORF11CD3 domain LDL57_11695 PF13505 Outer membrane protein beta-barrel domain LDL57_11800 PF00959 Phage lysozyme LDL57_11820 PF06530 Phage antitermination protein Q LDL57_11960 PF10548 P22AR C-terminal domain LDL57_11960 PF08346 AntA/AntB antirepressor LDL57_11990 PF10548 P22AR C-terminal domain LDL57_11990 PF08346 AntA/AntB antirepressor LDL57_12000 PF00589 Phage integrase family LDL57_12000 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LDL57_12010 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL57_12010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDL57_12015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LDL57_12015 PF00364 Biotin-requiring enzyme LDL57_12015 PF02817 e3 binding domain LDL57_12020 PF00456 Transketolase, thiamine diphosphate binding domain LDL57_12020 PF17831 Pyruvate dehydrogenase E1 component middle domain LDL57_12025 PF00392 Bacterial regulatory proteins, gntR family LDL57_12025 PF07729 FCD domain LDL57_12040 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LDL57_12040 PF00437 Type II/IV secretion system protein LDL57_12045 PF00482 Type II secretion system (T2SS), protein F LDL57_12050 PF00482 Type II secretion system (T2SS), protein F LDL57_12055 PF01121 Dephospho-CoA kinase LDL57_12060 PF07072 Cell division protein LDL57_12065 PF03884 DNA gyrase inhibitor YacG LDL57_12070 PF00293 NUDIX domain LDL57_12075 PF07517 SecA DEAD-like domain LDL57_12075 PF07516 SecA Wing and Scaffold domain LDL57_12075 PF02810 SEC-C motif LDL57_12075 PF01043 SecA preprotein cross-linking domain LDL57_12080 PF06558 Secretion monitor precursor protein (SecM) LDL57_12090 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LDL57_12095 PF12327 FtsZ family, C-terminal domain LDL57_12095 PF00091 Tubulin/FtsZ family, GTPase domain LDL57_12100 PF02491 SHS2 domain inserted in FTSA LDL57_12105 PF03799 Cell division protein FtsQ LDL57_12105 PF08478 POTRA domain, FtsQ-type LDL57_12110 PF07478 D-ala D-ala ligase C-terminus LDL57_12110 PF01820 D-ala D-ala ligase N-terminus LDL57_12115 PF02875 Mur ligase family, glutamate ligase domain LDL57_12115 PF08245 Mur ligase middle domain LDL57_12115 PF01225 Mur ligase family, catalytic domain LDL57_12120 PF03033 Glycosyltransferase family 28 N-terminal domain LDL57_12120 PF04101 Glycosyltransferase family 28 C-terminal domain LDL57_12125 PF01098 Cell cycle protein LDL57_12130 PF08245 Mur ligase middle domain LDL57_12130 PF02875 Mur ligase family, glutamate ligase domain LDL57_12135 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LDL57_12135 PF00953 Glycosyl transferase family 4 LDL57_12140 PF01225 Mur ligase family, catalytic domain LDL57_12140 PF08245 Mur ligase middle domain LDL57_12140 PF02875 Mur ligase family, glutamate ligase domain LDL57_12145 PF01225 Mur ligase family, catalytic domain LDL57_12145 PF02875 Mur ligase family, glutamate ligase domain LDL57_12145 PF08245 Mur ligase middle domain LDL57_12150 PF00905 Penicillin binding protein transpeptidase domain LDL57_12150 PF03717 Penicillin-binding Protein dimerisation domain LDL57_12155 PF04999 Cell division protein FtsL LDL57_12160 PF01795 MraW methylase family LDL57_12165 PF02381 MraZ protein, putative antitoxin-like LDL57_12170 PF00356 Bacterial regulatory proteins, lacI family LDL57_12170 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LDL57_12175 PF00501 AMP-binding enzyme LDL57_12180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_12180 PF03466 LysR substrate binding domain LDL57_12185 PF08502 LeuA allosteric (dimerisation) domain LDL57_12185 PF00682 HMGL-like LDL57_12190 PF00180 Isocitrate/isopropylmalate dehydrogenase LDL57_12195 PF00330 Aconitase family (aconitate hydratase) LDL57_12200 PF00694 Aconitase C-terminal domain LDL57_12205 PF02976 DNA mismatch repair enzyme MutH LDL57_12230 PF00491 Arginase family LDL57_12235 PF17944 Arginine decarboxylase C-terminal helical extension LDL57_12235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LDL57_12235 PF17810 Arginine decarboxylase helical bundle domain LDL57_12240 PF02773 S-adenosylmethionine synthetase, C-terminal domain LDL57_12240 PF00438 S-adenosylmethionine synthetase, N-terminal domain LDL57_12240 PF02772 S-adenosylmethionine synthetase, central domain LDL57_12245 PF17283 SprT-like zinc ribbon domain LDL57_12245 PF10263 SprT-like family LDL57_12250 PF03448 MgtE intracellular N domain LDL57_12250 PF01769 Divalent cation transporter LDL57_12250 PF00571 CBS domain LDL57_12260 PF04264 YceI-like domain LDL57_12265 PF01292 Prokaryotic cytochrome b561 LDL57_12285 PF01510 N-acetylmuramoyl-L-alanine amidase LDL57_12295 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LDL57_12295 PF18416 N-acetylglucosamine binding protein domain 2 LDL57_12310 PF09313 Domain of unknown function (DUF1971) LDL57_12310 PF03848 Tellurite resistance protein TehB LDL57_12315 PF07715 TonB-dependent Receptor Plug Domain LDL57_12315 PF00593 TonB dependent receptor LDL57_12325 PF01223 DNA/RNA non-specific endonuclease LDL57_12355 PF00593 TonB dependent receptor LDL57_12355 PF07715 TonB-dependent Receptor Plug Domain LDL57_12360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDL57_12365 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_12370 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_12375 PF00005 ABC transporter LDL57_12380 PF00005 ABC transporter LDL57_12385 PF04239 Protein of unknown function (DUF421) LDL57_12400 PF07690 Major Facilitator Superfamily LDL57_12410 PF06767 Sif protein LDL57_12445 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LDL57_12445 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LDL57_12455 PF04606 Ogr/Delta-like zinc finger LDL57_12465 PF09190 DALR domain LDL57_12465 PF01406 tRNA synthetases class I (C) catalytic domain LDL57_12470 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDL57_12475 PF00149 Calcineurin-like phosphoesterase LDL57_12480 PF00731 AIR carboxylase LDL57_12485 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LDL57_12485 PF02222 ATP-grasp domain LDL57_12500 PF00085 Thioredoxin LDL57_12505 PF01145 SPFH domain / Band 7 family LDL57_12505 PF16200 C-terminal region of band_7 LDL57_12510 PF01957 NfeD-like C-terminal, partner-binding LDL57_12515 PF13411 MerR HTH family regulatory protein LDL57_12520 PF00403 Heavy-metal-associated domain LDL57_12525 PF01963 TraB family LDL57_12530 PF04073 Aminoacyl-tRNA editing domain LDL57_12540 PF00999 Sodium/hydrogen exchanger family LDL57_12540 PF02254 TrkA-N domain LDL57_12545 PF00294 pfkB family carbohydrate kinase LDL57_12550 PF02706 Chain length determinant protein LDL57_12555 PF00762 Ferrochelatase LDL57_12560 PF05191 Adenylate kinase, active site lid LDL57_12565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_12565 PF00183 Hsp90 protein LDL57_12570 PF02132 RecR protein LDL57_12570 PF13662 Toprim domain LDL57_12575 PF02575 YbaB/EbfC DNA-binding family LDL57_12580 PF12169 DNA polymerase III subunits gamma and tau domain III LDL57_12580 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LDL57_12580 PF12170 DNA polymerase III tau subunit V interacting with alpha LDL57_12585 PF00156 Phosphoribosyl transferase domain LDL57_12595 PF10689 Protein of unknown function (DUF2496) LDL57_12600 PF00924 Mechanosensitive ion channel LDL57_12600 PF12795 Mechanosensitive ion channel porin domain LDL57_12600 PF12794 Mechanosensitive ion channel inner membrane domain 1 LDL57_12605 PF02635 DsrE/DsrF-like family LDL57_12610 PF00440 Bacterial regulatory proteins, tetR family LDL57_12610 PF08361 MAATS-type transcriptional repressor, C-terminal region LDL57_12615 PF00529 HlyD membrane-fusion protein of T1SS LDL57_12615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LDL57_12620 PF00873 AcrB/AcrD/AcrF family LDL57_12630 PF05321 Haemolysin expression modulating protein LDL57_12640 PF00664 ABC transporter transmembrane region LDL57_12640 PF00005 ABC transporter LDL57_12645 PF00664 ABC transporter transmembrane region LDL57_12645 PF00005 ABC transporter LDL57_12650 PF06508 Queuosine biosynthesis protein QueC LDL57_12660 PF13145 PPIC-type PPIASE domain LDL57_12665 PF00216 Bacterial DNA-binding protein LDL57_12670 PF05362 Lon protease (S16) C-terminal proteolytic domain LDL57_12670 PF00004 ATPase family associated with various cellular activities (AAA) LDL57_12670 PF02190 ATP-dependent protease La (LON) substrate-binding domain LDL57_12675 PF07724 AAA domain (Cdc48 subfamily) LDL57_12675 PF10431 C-terminal, D2-small domain, of ClpB protein LDL57_12675 PF06689 ClpX C4-type zinc finger LDL57_12680 PF00574 Clp protease LDL57_12685 PF05698 Bacterial trigger factor protein (TF) C-terminus LDL57_12685 PF05697 Bacterial trigger factor protein (TF) LDL57_12685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDL57_12690 PF01722 BolA-like protein LDL57_12695 PF03923 Uncharacterized lipoprotein LDL57_12695 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LDL57_12705 PF03502 Nucleoside-specific channel-forming protein, Tsx LDL57_12710 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LDL57_12710 PF06481 COX Aromatic Rich Motif LDL57_12715 PF00115 Cytochrome C and Quinol oxidase polypeptide I LDL57_12720 PF00510 Cytochrome c oxidase subunit III LDL57_12725 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LDL57_12730 PF01040 UbiA prenyltransferase family LDL57_12735 PF07690 Major Facilitator Superfamily LDL57_12740 PF04461 Protein of unknown function (DUF520) LDL57_12745 PF01965 DJ-1/PfpI family LDL57_12750 PF02568 Thiamine biosynthesis protein (ThiI) LDL57_12750 PF02926 THUMP domain LDL57_12755 PF02609 Exonuclease VII small subunit LDL57_12760 PF00348 Polyprenyl synthetase LDL57_12765 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LDL57_12765 PF02779 Transketolase, pyrimidine binding domain LDL57_12765 PF02780 Transketolase, C-terminal domain LDL57_12770 PF04608 Phosphatidylglycerophosphatase A LDL57_12775 PF02769 AIR synthase related protein, C-terminal domain LDL57_12775 PF00586 AIR synthase related protein, N-terminal domain LDL57_12780 PF01029 NusB family LDL57_12785 PF00885 6,7-dimethyl-8-ribityllumazine synthase LDL57_12790 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LDL57_12790 PF01872 RibD C-terminal domain LDL57_12795 PF03477 ATP cone domain LDL57_12800 PF07549 SecD/SecF GG Motif LDL57_12800 PF02355 Protein export membrane protein LDL57_12805 PF07549 SecD/SecF GG Motif LDL57_12805 PF02355 Protein export membrane protein LDL57_12805 PF13721 SecD export protein N-terminal TM region LDL57_12810 PF02699 Preprotein translocase subunit LDL57_12815 PF01702 Queuine tRNA-ribosyltransferase LDL57_12820 PF02547 Queuosine biosynthesis protein LDL57_12825 PF04336 Acyl carrier protein phosphodiesterase LDL57_12830 PF05525 Branched-chain amino acid transport protein LDL57_12835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_12835 PF00989 PAS fold LDL57_12835 PF11808 Phosphate regulon sensor protein PhoR LDL57_12835 PF00512 His Kinase A (phospho-acceptor) domain LDL57_12840 PF00486 Transcriptional regulatory protein, C terminal LDL57_12840 PF00072 Response regulator receiver domain LDL57_12855 PF04381 Putative exonuclease, RdgC LDL57_12860 PF02472 Biopolymer transport protein ExbD/TolR LDL57_12865 PF01618 MotA/TolQ/ExbB proton channel family LDL57_12870 PF09335 SNARE associated Golgi protein LDL57_12875 PF02142 MGS-like domain LDL57_12875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDL57_12875 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LDL57_12880 PF00117 Glutamine amidotransferase class-I LDL57_12880 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LDL57_12885 PF05173 Dihydrodipicolinate reductase, C-terminus LDL57_12885 PF01113 Dihydrodipicolinate reductase, N-terminus LDL57_12890 PF02401 LytB protein LDL57_12895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDL57_12900 PF01252 Signal peptidase (SPase) II LDL57_12905 PF08264 Anticodon-binding domain of tRNA LDL57_12905 PF00133 tRNA synthetases class I (I, L, M and V) LDL57_12905 PF06827 Zinc finger found in FPG and IleRS LDL57_12910 PF06574 FAD synthetase LDL57_12910 PF01687 Riboflavin kinase LDL57_12915 PF01649 Ribosomal protein S20 LDL57_12920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_12920 PF03466 LysR substrate binding domain LDL57_12925 PF06965 Na+/H+ antiporter 1 LDL57_12940 PF01556 DnaJ C terminal domain LDL57_12940 PF00684 DnaJ central domain LDL57_12940 PF00226 DnaJ domain LDL57_12945 PF00012 Hsp70 protein LDL57_12950 PF01184 GPR1/FUN34/yaaH family LDL57_12970 PF00994 Probable molybdopterin binding domain LDL57_12975 PF00923 Transaldolase/Fructose-6-phosphate aldolase LDL57_12980 PF03883 Peroxide stress protein YaaA LDL57_12985 PF00291 Pyridoxal-phosphate dependent enzyme LDL57_12985 PF14821 Threonine synthase N terminus LDL57_12990 PF08544 GHMP kinases C terminal LDL57_12990 PF00288 GHMP kinases N terminal domain LDL57_12995 PF01842 ACT domain LDL57_12995 PF13840 ACT domain LDL57_12995 PF00742 Homoserine dehydrogenase LDL57_12995 PF03447 Homoserine dehydrogenase, NAD binding domain LDL57_12995 PF00696 Amino acid kinase family LDL57_13005 PF00486 Transcriptional regulatory protein, C terminal LDL57_13005 PF00072 Response regulator receiver domain LDL57_13010 PF05981 CreA protein LDL57_13015 PF06445 GyrI-like small molecule binding domain LDL57_13015 PF12833 Helix-turn-helix domain LDL57_13020 PF00300 Histidine phosphatase superfamily (branch 1) LDL57_13030 PF01371 Trp repressor protein LDL57_13035 PF14718 Soluble lytic murein transglycosylase L domain LDL57_13035 PF01464 Transglycosylase SLT domain LDL57_13040 PF12848 ABC transporter LDL57_13040 PF00005 ABC transporter LDL57_13045 PF01381 Helix-turn-helix LDL57_13045 PF13521 AAA domain LDL57_13050 PF18073 Rubredoxin metal binding domain LDL57_13055 PF18429 Domain of unknown function (DUF5609) LDL57_13060 PF10144 Bacterial virulence factor haemolysin LDL57_13065 PF01048 Phosphorylase superfamily LDL57_13070 PF01676 Metalloenzyme superfamily LDL57_13075 PF01791 DeoC/LacD family aldolase LDL57_13080 PF01773 Na+ dependent nucleoside transporter N-terminus LDL57_13080 PF07662 Na+ dependent nucleoside transporter C-terminus LDL57_13080 PF07670 Nucleoside recognition LDL57_13085 PF01026 TatD related DNase LDL57_13090 PF01734 Patatin-like phospholipase LDL57_13095 PF16658 Class II release factor RF3, C-terminal domain LDL57_13095 PF03144 Elongation factor Tu domain 2 LDL57_13095 PF00009 Elongation factor Tu GTP binding domain LDL57_13110 PF00583 Acetyltransferase (GNAT) family LDL57_13120 PF08468 Methyltransferase small domain N-terminal LDL57_13120 PF05175 Methyltransferase small domain LDL57_13125 PF02690 Na+/Pi-cotransporter LDL57_13130 PF00535 Glycosyl transferase family 2 LDL57_13160 PF12724 Flavodoxin domain LDL57_13165 PF02386 Cation transport protein LDL57_13170 PF09186 Domain of unknown function (DUF1949) LDL57_13170 PF01205 Uncharacterized protein family UPF0029 LDL57_13180 PF00378 Enoyl-CoA hydratase/isomerase LDL57_13180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LDL57_13180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LDL57_13185 PF00108 Thiolase, N-terminal domain LDL57_13185 PF02803 Thiolase, C-terminal domain LDL57_13190 PF00175 Oxidoreductase NAD-binding domain LDL57_13190 PF00970 Oxidoreductase FAD-binding domain LDL57_13195 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LDL57_13200 PF03575 Peptidase family S51 LDL57_13205 PF02357 Transcription termination factor nusG LDL57_13210 PF00902 Sec-independent protein translocase protein (TatC) LDL57_13220 PF02416 mttA/Hcf106 family LDL57_13225 PF03109 ABC1 family LDL57_13230 PF02036 SCP-2 sterol transfer family LDL57_13235 PF01209 ubiE/COQ5 methyltransferase family LDL57_13240 PF02646 RmuC family LDL57_13245 PF09335 SNARE associated Golgi protein LDL57_13250 PF01048 Phosphorylase superfamily LDL57_13260 PF00892 EamA-like transporter family LDL57_13265 PF00999 Sodium/hydrogen exchanger family LDL57_13270 PF00860 Permease family LDL57_13280 PF04371 Porphyromonas-type peptidyl-arginine deiminase LDL57_13290 PF00313 'Cold-shock' DNA-binding domain LDL57_13300 PF00436 Single-strand binding protein family LDL57_13305 PF17755 UvrA DNA-binding domain LDL57_13305 PF17760 UvrA interaction domain LDL57_13305 PF00005 ABC transporter LDL57_13310 PF05870 Phenolic acid decarboxylase (PAD) LDL57_13330 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LDL57_13330 PF00413 Matrixin LDL57_13330 PF08548 Peptidase M10 serralysin C terminal LDL57_13335 PF14436 Bacterial EndoU nuclease LDL57_13335 PF13332 Hemagglutinin repeat LDL57_13335 PF05594 Haemagluttinin repeat LDL57_13335 PF04829 Pre-toxin domain with VENN motif LDL57_13335 PF05860 haemagglutination activity domain LDL57_13345 PF01168 Alanine racemase, N-terminal domain LDL57_13345 PF00842 Alanine racemase, C-terminal domain LDL57_13350 PF03796 DnaB-like helicase C terminal domain LDL57_13350 PF00772 DnaB-like helicase N terminal domain LDL57_13355 PF01207 Dihydrouridine synthase (Dus) LDL57_13405 PF00296 Luciferase-like monooxygenase LDL57_13410 PF00296 Luciferase-like monooxygenase LDL57_13450 PF01206 Sulfurtransferase TusA LDL57_13455 PF04143 Sulphur transport LDL57_13460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_13460 PF03466 LysR substrate binding domain LDL57_13465 PF02525 Flavodoxin-like fold LDL57_13470 PF00011 Hsp20/alpha crystallin family LDL57_13475 PF00893 Small Multidrug Resistance protein LDL57_13480 PF00102 Protein-tyrosine phosphatase LDL57_13480 PF09013 YopH, N-terminal LDL57_13490 PF09285 Elongation factor P, C-terminal LDL57_13490 PF01132 Elongation factor P (EF-P) OB domain LDL57_13490 PF08207 Elongation factor P (EF-P) KOW-like domain LDL57_13495 PF04055 Radical SAM superfamily LDL57_13500 PF13698 Domain of unknown function (DUF4156) LDL57_13505 PF00118 TCP-1/cpn60 chaperonin family LDL57_13510 PF00166 Chaperonin 10 Kd subunit LDL57_13515 PF04186 FxsA cytoplasmic membrane protein LDL57_13520 PF10415 Fumarase C C-terminus LDL57_13520 PF00206 Lyase LDL57_13525 PF03605 Anaerobic c4-dicarboxylate membrane transporter LDL57_13530 PF11412 Disulphide bond corrector protein DsbC LDL57_13530 PF02683 Cytochrome C biogenesis protein transmembrane region LDL57_13530 PF13098 Thioredoxin-like domain LDL57_13545 PF00082 Subtilase family LDL57_13565 PF00933 Glycosyl hydrolase family 3 N terminal domain LDL57_13565 PF01915 Glycosyl hydrolase family 3 C-terminal domain LDL57_13570 PF06276 Ferric iron reductase FhuF-like transporter LDL57_13570 PF04183 IucA / IucC family LDL57_13575 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LDL57_13580 PF00282 Pyridoxal-dependent decarboxylase conserved domain LDL57_13585 PF11575 FhuF 2Fe-2S C-terminal domain LDL57_13585 PF06276 Ferric iron reductase FhuF-like transporter LDL57_13590 PF00005 ABC transporter LDL57_13595 PF01032 FecCD transport family LDL57_13600 PF01032 FecCD transport family LDL57_13605 PF01497 Periplasmic binding protein LDL57_13610 PF07715 TonB-dependent Receptor Plug Domain LDL57_13610 PF00593 TonB dependent receptor LDL57_13615 PF06276 Ferric iron reductase FhuF-like transporter LDL57_13615 PF04183 IucA / IucC family LDL57_13620 PF13419 Haloacid dehalogenase-like hydrolase LDL57_13625 PF03633 Glycosyl hydrolase family 65, C-terminal domain LDL57_13625 PF03632 Glycosyl hydrolase family 65 central catalytic domain LDL57_13625 PF03636 Glycosyl hydrolase family 65, N-terminal domain LDL57_13630 PF00367 phosphotransferase system, EIIB LDL57_13630 PF02378 Phosphotransferase system, EIIC LDL57_13650 PF04055 Radical SAM superfamily LDL57_13650 PF06969 HemN C-terminal domain LDL57_13675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_13675 PF03466 LysR substrate binding domain LDL57_13680 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL57_13680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LDL57_13685 PF03741 Integral membrane protein TerC family LDL57_13690 PF09335 SNARE associated Golgi protein LDL57_13695 PF05957 Bacterial protein of unknown function (DUF883) LDL57_13700 PF07332 Putative Actinobacterial Holin-X, holin superfamily III LDL57_13710 PF07681 DoxX LDL57_13715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDL57_13715 PF03466 LysR substrate binding domain LDL57_13720 PF17954 Quercetinase C-terminal cupin domain LDL57_13720 PF02678 Pirin LDL57_13730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDL57_13760 PF01979 Amidohydrolase family LDL57_13765 PF03841 L-seryl-tRNA selenium transferase LDL57_13770 PF07071 KDGP aldolase LDL57_13780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDL57_13785 PF04348 LppC putative lipoprotein LDL57_13790 PF02021 Uncharacterised protein family UPF0102 LDL57_13795 PF13580 SIS domain LDL57_13800 PF04972 BON domain LDL57_13805 PF00912 Transglycosylase LDL57_13815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_13815 PF00512 His Kinase A (phospho-acceptor) domain LDL57_13815 PF18415 Histidine kinase receptor ArcB trans-membrane domain LDL57_13815 PF01627 Hpt domain LDL57_13815 PF00989 PAS fold LDL57_13815 PF00072 Response regulator receiver domain LDL57_13820 PF04386 Stringent starvation protein B LDL57_13825 PF00043 Glutathione S-transferase, C-terminal domain LDL57_13825 PF02798 Glutathione S-transferase, N-terminal domain LDL57_13830 PF00380 Ribosomal protein S9/S16 LDL57_13835 PF00572 Ribosomal protein L13 LDL57_13840 PF03969 AFG1-like ATPase LDL57_13845 PF06295 Protein of unknown function (DUF1043) LDL57_13850 PF13180 PDZ domain LDL57_13850 PF00595 PDZ domain LDL57_13855 PF13180 PDZ domain LDL57_13860 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LDL57_13865 PF01722 BolA-like protein LDL57_13875 PF05494 MlaC protein LDL57_13880 PF02470 MlaD protein LDL57_13885 PF02405 Permease MlaE LDL57_13890 PF00005 ABC transporter LDL57_13895 PF00571 CBS domain LDL57_13895 PF01380 SIS domain LDL57_13905 PF06835 Lipopolysaccharide-assembly, LptC-related LDL57_13910 PF03968 OstA-like protein LDL57_13915 PF00005 ABC transporter LDL57_13915 PF12399 Branched-chain amino acid ATP-binding cassette transporter LDL57_13920 PF00309 Sigma-54 factor, Activator interacting domain (AID) LDL57_13920 PF04552 Sigma-54, DNA binding domain LDL57_13920 PF04963 Sigma-54 factor, core binding domain LDL57_13925 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LDL57_13930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDL57_13935 PF03668 P-loop ATPase protein family LDL57_13940 PF00381 PTS HPr component phosphorylation site LDL57_13945 PF01523 Putative modulator of DNA gyrase LDL57_13950 PF04751 Protein of unknown function (DUF615) LDL57_13955 PF01337 Barstar (barnase inhibitor) LDL57_13960 PF00545 ribonuclease LDL57_13965 PF01523 Putative modulator of DNA gyrase LDL57_13970 PF00795 Carbon-nitrogen hydrolase LDL57_13975 PF13502 AsmA-like C-terminal region LDL57_13975 PF13116 Protein of unknown function LDL57_13980 PF00575 S1 RNA binding domain LDL57_13980 PF10150 Ribonuclease E/G family LDL57_13985 PF02545 Maf-like protein LDL57_13990 PF04093 rod shape-determining protein MreD LDL57_13995 PF04085 rod shape-determining protein MreC LDL57_14010 PF01220 Dehydroquinase class II LDL57_14015 PF00364 Biotin-requiring enzyme LDL57_14020 PF02785 Biotin carboxylase C-terminal domain LDL57_14020 PF00289 Biotin carboxylase, N-terminal domain LDL57_14020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDL57_14025 PF06196 Protein of unknown function (DUF997) LDL57_14030 PF00474 Sodium:solute symporter family LDL57_14040 PF01207 Dihydrouridine synthase (Dus) LDL57_14045 PF02954 Bacterial regulatory protein, Fis family LDL57_14070 PF00140 Sigma-70 factor, region 1.2 LDL57_14070 PF04542 Sigma-70 region 2 LDL57_14070 PF04545 Sigma-70, region 4 LDL57_14075 PF02687 FtsX-like permease family LDL57_14075 PF18075 FtsX extracellular domain LDL57_14080 PF00005 ABC transporter LDL57_14085 PF00448 SRP54-type protein, GTPase domain LDL57_14085 PF02881 SRP54-type protein, helical bundle domain LDL57_14095 PF06611 Protein of unknown function (DUF1145) LDL57_14110 PF00403 Heavy-metal-associated domain LDL57_14115 PF01206 Sulfurtransferase TusA LDL57_14120 PF02592 Putative vitamin uptake transporter LDL57_14125 PF07690 Major Facilitator Superfamily LDL57_14130 PF03009 Glycerophosphoryl diester phosphodiesterase family LDL57_14135 PF00152 tRNA synthetases class II (D, K and N) LDL57_14140 PF00890 FAD binding domain LDL57_14140 PF02910 Fumarate reductase flavoprotein C-term LDL57_14145 PF13085 2Fe-2S iron-sulfur cluster binding domain LDL57_14145 PF13183 4Fe-4S dicluster domain LDL57_14150 PF02300 Fumarate reductase subunit C LDL57_14155 PF02313 Fumarate reductase subunit D LDL57_14160 PF00132 Bacterial transferase hexapeptide (six repeats) LDL57_14170 PF06226 Protein of unknown function (DUF1007) LDL57_14175 PF03824 High-affinity nickel-transport protein LDL57_14185 PF03606 C4-dicarboxylate anaerobic carrier LDL57_14190 PF06039 Malate:quinone oxidoreductase (Mqo) LDL57_14195 PF02753 Pili assembly chaperone PapD, C-terminal domain LDL57_14195 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDL57_14205 PF13953 PapC C-terminal domain LDL57_14205 PF13954 PapC N-terminal domain LDL57_14205 PF00577 Outer membrane usher protein LDL57_14215 PF02753 Pili assembly chaperone PapD, C-terminal domain LDL57_14215 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDL57_14245 PF01381 Helix-turn-helix LDL57_14265 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LDL57_14270 PF02447 GntP family permease LDL57_14275 PF01202 Shikimate kinase LDL57_14280 PF01475 Ferric uptake regulator family LDL57_14285 PF01726 LexA DNA binding domain LDL57_14285 PF00717 Peptidase S24-like LDL57_14290 PF01219 Prokaryotic diacylglycerol kinase LDL57_14295 PF01553 Acyltransferase LDL57_14300 PF01040 UbiA prenyltransferase family LDL57_14305 PF04345 Chorismate lyase LDL57_14310 PF00342 Phosphoglucose isomerase LDL57_14315 PF00696 Amino acid kinase family LDL57_14315 PF01842 ACT domain LDL57_14335 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LDL57_14345 PF01274 Malate synthase LDL57_14375 PF00132 Bacterial transferase hexapeptide (six repeats) LDL57_14380 PF01488 Shikimate / quinate 5-dehydrogenase LDL57_14380 PF08501 Shikimate dehydrogenase substrate binding domain LDL57_14380 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LDL57_14385 PF01300 Telomere recombination LDL57_14390 PF01396 Topoisomerase DNA binding C4 zinc finger LDL57_14395 PF17782 DprA winged helix domain LDL57_14395 PF02481 DNA recombination-mediator protein A LDL57_14400 PF01327 Polypeptide deformylase LDL57_14405 PF00551 Formyl transferase LDL57_14405 PF02911 Formyl transferase, C-terminal domain LDL57_14410 PF01029 NusB family LDL57_14410 PF01189 16S rRNA methyltransferase RsmB/F LDL57_14415 PF02254 TrkA-N domain LDL57_14415 PF02080 TrkA-C domain LDL57_14420 PF01741 Large-conductance mechanosensitive channel, MscL LDL57_14425 PF03889 Alternative ribosome-rescue factor A LDL57_14430 PF13411 MerR HTH family regulatory protein LDL57_14435 PF01196 Ribosomal protein L17 LDL57_14440 PF01000 RNA polymerase Rpb3/RpoA insert domain LDL57_14440 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LDL57_14440 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LDL57_14445 PF00163 Ribosomal protein S4/S9 N-terminal domain LDL57_14445 PF01479 S4 domain LDL57_14450 PF00411 Ribosomal protein S11 LDL57_14455 PF00416 Ribosomal protein S13/S18 LDL57_14460 PF00444 Ribosomal protein L36 LDL57_14465 PF00344 SecY translocase LDL57_14470 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LDL57_14475 PF00327 Ribosomal protein L30p/L7e LDL57_14480 PF00333 Ribosomal protein S5, N-terminal domain LDL57_14480 PF03719 Ribosomal protein S5, C-terminal domain LDL57_14485 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LDL57_14490 PF00347 Ribosomal protein L6 LDL57_14495 PF00410 Ribosomal protein S8 LDL57_14500 PF00253 Ribosomal protein S14p/S29e LDL57_14505 PF00281 Ribosomal protein L5 LDL57_14505 PF00673 ribosomal L5P family C-terminus LDL57_14510 PF00467 KOW motif LDL57_14510 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LDL57_14515 PF00238 Ribosomal protein L14p/L23e LDL57_14520 PF00366 Ribosomal protein S17 LDL57_14525 PF00831 Ribosomal L29 protein LDL57_14530 PF00252 Ribosomal protein L16p/L10e LDL57_14535 PF07650 KH domain LDL57_14535 PF00189 Ribosomal protein S3, C-terminal domain LDL57_14540 PF00237 Ribosomal protein L22p/L17e LDL57_14545 PF00203 Ribosomal protein S19 LDL57_14550 PF00181 Ribosomal Proteins L2, RNA binding domain LDL57_14550 PF03947 Ribosomal Proteins L2, C-terminal domain LDL57_14555 PF00276 Ribosomal protein L23 LDL57_14560 PF00573 Ribosomal protein L4/L1 family LDL57_14565 PF00297 Ribosomal protein L3 LDL57_14570 PF00338 Ribosomal protein S10p/S20e LDL57_14575 PF00210 Ferritin-like domain LDL57_14585 PF03143 Elongation factor Tu C-terminal domain LDL57_14585 PF03144 Elongation factor Tu domain 2 LDL57_14585 PF00009 Elongation factor Tu GTP binding domain LDL57_14610 PF00485 Phosphoribulokinase / Uridine kinase family LDL57_14615 PF08279 HTH domain LDL57_14615 PF03099 Biotin/lipoate A/B protein ligase family LDL57_14615 PF02237 Biotin protein ligase C terminal domain LDL57_14620 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LDL57_14620 PF01565 FAD binding domain LDL57_14645 PF02142 MGS-like domain LDL57_14645 PF01808 AICARFT/IMPCHase bienzyme LDL57_14650 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LDL57_14650 PF02843 Phosphoribosylglycinamide synthetase, C domain LDL57_14650 PF02844 Phosphoribosylglycinamide synthetase, N domain LDL57_14655 PF07356 Protein of unknown function (DUF1481) LDL57_14660 PF00216 Bacterial DNA-binding protein LDL57_14665 PF04222 Protein of unknown function (DUF416) LDL57_14670 PF04493 Endonuclease V LDL57_14675 PF01208 Uroporphyrinogen decarboxylase (URO-D) LDL57_14680 PF00293 NUDIX domain LDL57_14680 PF09297 NADH pyrophosphatase zinc ribbon domain LDL57_14690 PF02581 Thiamine monophosphate synthase LDL57_14700 PF02597 ThiS family LDL57_14705 PF05690 Thiazole biosynthesis protein ThiG LDL57_14710 PF06968 Biotin and Thiamin Synthesis associated domain LDL57_14710 PF04055 Radical SAM superfamily LDL57_14715 PF01522 Polysaccharide deacetylase LDL57_14725 PF04997 RNA polymerase Rpb1, domain 1 LDL57_14725 PF00623 RNA polymerase Rpb1, domain 2 LDL57_14725 PF04983 RNA polymerase Rpb1, domain 3 LDL57_14725 PF05000 RNA polymerase Rpb1, domain 4 LDL57_14725 PF04998 RNA polymerase Rpb1, domain 5 LDL57_14730 PF04560 RNA polymerase Rpb2, domain 7 LDL57_14730 PF00562 RNA polymerase Rpb2, domain 6 LDL57_14730 PF10385 RNA polymerase beta subunit external 1 domain LDL57_14730 PF04561 RNA polymerase Rpb2, domain 2 LDL57_14730 PF04563 RNA polymerase beta subunit LDL57_14730 PF04565 RNA polymerase Rpb2, domain 3 LDL57_14735 PF00542 Ribosomal protein L7/L12 C-terminal domain LDL57_14735 PF16320 Ribosomal protein L7/L12 dimerisation domain LDL57_14740 PF00466 Ribosomal protein L10 LDL57_14745 PF00687 Ribosomal protein L1p/L10e family LDL57_14750 PF03946 Ribosomal protein L11, N-terminal domain LDL57_14750 PF00298 Ribosomal protein L11, RNA binding domain LDL57_14755 PF02357 Transcription termination factor nusG LDL57_14755 PF00467 KOW motif LDL57_14760 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LDL57_14765 PF00009 Elongation factor Tu GTP binding domain LDL57_14765 PF03143 Elongation factor Tu C-terminal domain LDL57_14765 PF03144 Elongation factor Tu domain 2 LDL57_14770 PF00679 Elongation factor G C-terminus LDL57_14770 PF14492 Elongation Factor G, domain II LDL57_14770 PF03764 Elongation factor G, domain IV LDL57_14770 PF00009 Elongation factor Tu GTP binding domain LDL57_14770 PF03144 Elongation factor Tu domain 2 LDL57_14775 PF00177 Ribosomal protein S7p/S5e LDL57_14780 PF00164 Ribosomal protein S12/S23 LDL57_14785 PF04077 DsrH like protein LDL57_14790 PF02635 DsrE/DsrF-like family LDL57_14795 PF02635 DsrE/DsrF-like family LDL57_14800 PF13309 HTH domain LDL57_14800 PF08348 YheO-like PAS domain LDL57_14805 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDL57_14805 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LDL57_14810 PF04102 SlyX LDL57_14815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDL57_14825 PF00999 Sodium/hydrogen exchanger family LDL57_14825 PF02254 TrkA-N domain LDL57_14830 PF02525 Flavodoxin-like fold LDL57_14835 PF00005 ABC transporter LDL57_14835 PF12848 ABC transporter LDL57_14840 PF01418 Helix-turn-helix domain, rpiR family LDL57_14840 PF01380 SIS domain LDL57_14845 PF13580 SIS domain LDL57_14855 PF01810 LysE type translocator LDL57_14860 PF00561 alpha/beta hydrolase fold LDL57_14865 PF06794 Uncharacterised protein family (UPF0270) LDL57_14870 PF00485 Phosphoribulokinase / Uridine kinase family LDL57_14875 PF00027 Cyclic nucleotide-binding domain LDL57_14875 PF13545 Crp-like helix-turn-helix domain LDL57_14880 PF04343 Protein of unknown function, DUF488 LDL57_14885 PF00117 Glutamine amidotransferase class-I LDL57_14895 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDL57_14900 PF01926 50S ribosome-binding GTPase LDL57_14905 PF01612 3'-5' exonuclease LDL57_14905 PF01367 5'-3' exonuclease, C-terminal SAM fold LDL57_14905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDL57_14905 PF00476 DNA polymerase family A LDL57_14910 PF01323 DSBA-like thioredoxin domain LDL57_14915 PF01636 Phosphotransferase enzyme family LDL57_14920 PF06288 Protein of unknown function (DUF1040) LDL57_14925 PF03091 CutA1 divalent ion tolerance protein LDL57_14945 PF00795 Carbon-nitrogen hydrolase LDL57_14955 PF12804 MobA-like NTP transferase domain LDL57_14960 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LDL57_14965 PF00561 alpha/beta hydrolase fold LDL57_14970 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL57_14970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDL57_14975 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LDL57_14985 PF03631 Virulence factor BrkB LDL57_14990 PF05193 Peptidase M16 inactive domain LDL57_14990 PF00675 Insulinase (Peptidase family M16) LDL57_14995 PF13332 Hemagglutinin repeat LDL57_14995 PF05860 haemagglutination activity domain LDL57_15000 PF13332 Hemagglutinin repeat LDL57_15000 PF05860 haemagglutination activity domain LDL57_15005 PF00005 ABC transporter LDL57_15005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDL57_15010 PF00005 ABC transporter LDL57_15010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDL57_15015 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_15015 PF12911 N-terminal TM domain of oligopeptide transport permease C LDL57_15020 PF00528 Binding-protein-dependent transport system inner membrane component LDL57_15025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDL57_15030 PF08479 POTRA domain, ShlB-type LDL57_15030 PF17287 POTRA domain LDL57_15030 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LDL57_15045 PF05860 haemagglutination activity domain LDL57_15045 PF14436 Bacterial EndoU nuclease LDL57_15045 PF04829 Pre-toxin domain with VENN motif LDL57_15045 PF13332 Hemagglutinin repeat LDL57_15045 PF05594 Haemagluttinin repeat LDL57_15050 PF05746 DALR anticodon binding domain LDL57_15050 PF02092 Glycyl-tRNA synthetase beta subunit LDL57_15055 PF02091 Glycyl-tRNA synthetase alpha subunit LDL57_15060 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LDL57_15060 PF00413 Matrixin LDL57_15060 PF08548 Peptidase M10 serralysin C terminal LDL57_15075 PF04488 Glycosyltransferase sugar-binding region containing DXD motif LDL57_15075 PF15645 Dermonecrotoxin of the Papain-like fold LDL57_15085 PF03352 Methyladenine glycosylase LDL57_15090 PF00155 Aminotransferase class I and II LDL57_15095 PF07119 Protein of unknown function (DUF1375) LDL57_15110 PF12566 Protein of unknown function (DUF3748) LDL57_15110 PF07676 WD40-like Beta Propeller Repeat LDL57_15115 PF03458 UPF0126 domain LDL57_15120 PF01653 NAD-dependent DNA ligase adenylation domain LDL57_15120 PF03120 NAD-dependent DNA ligase OB-fold domain LDL57_15125 PF00625 Guanylate kinase LDL57_15130 PF01192 RNA polymerase Rpb6 LDL57_15135 PF13291 ACT domain LDL57_15135 PF04607 Region found in RelA / SpoT proteins LDL57_15135 PF02824 TGS domain LDL57_15140 PF12105 SpoU, rRNA methylase, C-terminal LDL57_15140 PF00588 SpoU rRNA Methylase family LDL57_15145 PF00270 DEAD/DEAH box helicase LDL57_15145 PF00271 Helicase conserved C-terminal domain LDL57_15145 PF17191 RecG wedge domain LDL57_15150 PF03616 Sodium/glutamate symporter LDL57_15155 PF05170 AsmA family LDL57_15165 PF02580 D-Tyr-tRNA(Tyr) deacylase LDL57_15170 PF13419 Haloacid dehalogenase-like hydrolase LDL57_15180 PF03144 Elongation factor Tu domain 2 LDL57_15180 PF00009 Elongation factor Tu GTP binding domain LDL57_15180 PF00679 Elongation factor G C-terminus LDL57_15185 PF00311 Phosphoenolpyruvate carboxylase LDL57_15190 PF00696 Amino acid kinase family LDL57_15190 PF00742 Homoserine dehydrogenase LDL57_15190 PF03447 Homoserine dehydrogenase, NAD binding domain LDL57_15195 PF01340 Met Apo-repressor, MetJ LDL57_15200 PF01197 Ribosomal protein L31 LDL57_15205 PF00270 DEAD/DEAH box helicase LDL57_15205 PF00271 Helicase conserved C-terminal domain LDL57_15205 PF17764 3′ DNA-binding domain (3′BD) LDL57_15205 PF18074 Primosomal protein N C-terminal domain LDL57_15205 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LDL57_15210 PF00356 Bacterial regulatory proteins, lacI family LDL57_15215 PF05036 Sporulation related domain LDL57_15220 PF00227 Proteasome subunit LDL57_15225 PF00004 ATPase family associated with various cellular activities (AAA) LDL57_15225 PF07724 AAA domain (Cdc48 subfamily) LDL57_15225 PF10431 C-terminal, D2-small domain, of ClpB protein LDL57_15230 PF01040 UbiA prenyltransferase family LDL57_15235 PF03737 Aldolase/RraA LDL57_15240 PF06005 Cell division protein ZapB LDL57_15245 PF00230 Major intrinsic protein LDL57_15265 PF07690 Major Facilitator Superfamily LDL57_15270 PF00175 Oxidoreductase NAD-binding domain LDL57_15270 PF00970 Oxidoreductase FAD-binding domain LDL57_15280 PF07305 Protein of unknown function (DUF1454) LDL57_15285 PF00121 Triosephosphate isomerase LDL57_15290 PF02369 Bacterial Ig-like domain (group 1) LDL57_15290 PF02368 Bacterial Ig-like domain (group 2) LDL57_15290 PF11924 Inverse autotransporter, beta-domain LDL57_15290 PF07979 Intimin C-type lectin domain LDL57_15290 PF01476 LysM domain LDL57_15295 PF02369 Bacterial Ig-like domain (group 1) LDL57_15295 PF11924 Inverse autotransporter, beta-domain LDL57_15295 PF07979 Intimin C-type lectin domain LDL57_15295 PF01476 LysM domain LDL57_15300 PF00730 HhH-GPD superfamily base excision DNA repair protein LDL57_15300 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain LDL57_15305 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDL57_15305 PF02753 Pili assembly chaperone PapD, C-terminal domain LDL57_15315 PF13953 PapC C-terminal domain LDL57_15315 PF13954 PapC N-terminal domain LDL57_15315 PF00577 Outer membrane usher protein LDL57_15320 PF02753 Pili assembly chaperone PapD, C-terminal domain LDL57_15320 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LDL57_15330 PF01081 KDPG and KHG aldolase LDL57_15350 PF01022 Bacterial regulatory protein, arsR family LDL57_15410 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LDL57_15410 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LDL57_15410 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LDL57_15415 PF01370 NAD dependent epimerase/dehydratase family LDL57_15420 PF08240 Alcohol dehydrogenase GroES-like domain LDL57_15420 PF00107 Zinc-binding dehydrogenase LDL57_15425 PF00009 Elongation factor Tu GTP binding domain LDL57_15425 PF03144 Elongation factor Tu domain 2 LDL57_15425 PF09106 Elongation factor SelB, winged helix LDL57_15425 PF09107 Elongation factor SelB, winged helix LDL57_15430 PF12390 Selenocysteine synthase N terminal LDL57_15430 PF03841 L-seryl-tRNA selenium transferase LDL57_15435 PF04216 Protein involved in formate dehydrogenase formation LDL57_15440 PF01292 Prokaryotic cytochrome b561 LDL57_15455 PF13247 4Fe-4S dicluster domain LDL57_15455 PF09163 Formate dehydrogenase N, transmembrane LDL57_15465 PF02634 FdhD/NarQ family LDL57_15495 PF03544 Gram-negative bacterial TonB protein C-terminal LDL57_15500 PF00583 Acetyltransferase (GNAT) family LDL57_15525 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDL57_15525 PF13247 4Fe-4S dicluster domain LDL57_15525 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LDL57_15530 PF00860 Permease family LDL57_15535 PF03350 Uncharacterized protein family, UPF0114 LDL57_15545 PF01926 50S ribosome-binding GTPase LDL57_15545 PF12631 MnmE helical domain LDL57_15545 PF10396 GTP-binding protein TrmE N-terminus LDL57_15550 PF02096 60Kd inner membrane protein LDL57_15550 PF14849 YidC periplasmic domain LDL57_15555 PF01809 Putative membrane protein insertion efficiency factor LDL57_15560 PF00825 Ribonuclease P LDL57_15565 PF00468 Ribosomal protein L34 LDL57_15570 PF02796 Helix-turn-helix domain of resolvase LDL57_15570 PF00239 Resolvase, N terminal domain LDL57_15580 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LDL57_15580 PF00413 Matrixin LDL57_15580 PF08548 Peptidase M10 serralysin C terminal LDL57_15600 PF00565 Staphylococcal nuclease homologue LDL57_15615 PF01815 Rop protein LDL57_15625 PF12602 Fertility inhibition protein N terminal LDL57_15625 PF04352 ProQ/FINO family LDL57_15630 PF04754 Putative transposase, YhgA-like LDL57_15640 PF00216 Bacterial DNA-binding protein LDL57_15645 PF10134 Replication initiator protein A LDL57_15670 PF00239 Resolvase, N terminal domain LDL57_15670 PF02796 Helix-turn-helix domain of resolvase LDL57_15695 PF03513 Cloacin immunity protein LDL57_15700 PF03515 Colicin-like bacteriocin tRNase domain LDL57_15700 PF09000 Cytotoxic LDL57_15700 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 LDL57_15725 PF03513 Cloacin immunity protein LDL57_15730 PF03515 Colicin-like bacteriocin tRNase domain LDL57_15730 PF09000 Cytotoxic LDL57_15730 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 LDL57_15765 PF01464 Transglycosylase SLT domain LDL57_15770 PF01695 IstB-like ATP binding protein LDL57_15775 PF00665 Integrase core domain LDL57_15775 PF02796 Helix-turn-helix domain of resolvase LDL57_15800 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LDL57_15805 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LDL57_15805 PF00437 Type II/IV secretion system protein LDL57_15820 PF07655 Secretin N-terminal domain LDL57_15820 PF00263 Bacterial type II and III secretion system protein LDL57_15835 PF02796 Helix-turn-helix domain of resolvase LDL57_15835 PF00239 Resolvase, N terminal domain LDL57_15860 PF01815 Rop protein LDL57_15870 PF04352 ProQ/FINO family LDL57_15870 PF12602 Fertility inhibition protein N terminal LDL57_15875 PF04754 Putative transposase, YhgA-like LDL57_15880 PF00216 Bacterial DNA-binding protein LDL57_15885 PF10134 Replication initiator protein A LDL57_15890 PF13614 AAA domain LDL57_15920 PF07178 TraL protein LDL57_15925 PF05309 TraE protein LDL57_15935 PF03743 Bacterial conjugation TrbI-like protein LDL57_15950 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer LDL57_15955 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer LDL57_15960 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer LDL57_15980 PF12477 Sex factor F TraW protein N terminal LDL57_15985 PF06834 TraU protein LDL57_16000 PF13728 F plasmid transfer operon protein LDL57_16010 PF13728 F plasmid transfer operon protein LDL57_16015 PF06122 Conjugative relaxosome accessory transposon protein LDL57_16020 PF07916 TraG-like protein, N-terminal region LDL57_16040 PF05818 Enterobacterial TraT complement resistance protein LDL57_16055 PF07057 DNA helicase TraI LDL57_16055 PF18340 DNA relaxase TraI 2B/2B-like domain LDL57_16055 PF08751 TrwC relaxase LDL57_16055 PF18272 single-stranded DNA binding TraI N-terminal subdomain LDL57_16065 PF00313 'Cold-shock' DNA-binding domain LDL57_16070 PF06146 Phosphate-starvation-inducible E LDL57_16075 PF00011 Hsp20/alpha crystallin family LDL57_16085 PF01464 Transglycosylase SLT domain LDL57_16095 PF01815 Rop protein LDL57_16110 PF04754 Putative transposase, YhgA-like LDL57_16120 PF00216 Bacterial DNA-binding protein LDL57_16130 PF10134 Replication initiator protein A LDL57_16155 PF02796 Helix-turn-helix domain of resolvase LDL57_16155 PF00239 Resolvase, N terminal domain LDL57_16165 PF00565 Staphylococcal nuclease homologue LDL57_16170 PF04986 Putative transposase LDL57_16170 PF14319 Transposase zinc-binding domain LDL57_16175 PF12951 Passenger-associated-transport-repeat LDL57_16175 PF00082 Subtilase family LDL57_16175 PF03797 Autotransporter beta-domain LDL57_16195 PF04986 Putative transposase LDL57_16195 PF14319 Transposase zinc-binding domain LDL57_16205 PF04754 Putative transposase, YhgA-like LDL57_16215 PF00216 Bacterial DNA-binding protein LDL57_16220 PF10134 Replication initiator protein A LDL57_16230 PF13614 AAA domain LDL57_16240 PF03515 Colicin-like bacteriocin tRNase domain LDL57_16240 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 LDL57_16245 PF01320 Colicin immunity protein / pyocin immunity protein LDL57_16265 PF06958 S-type Pyocin LDL57_16270 PF01320 Colicin immunity protein / pyocin immunity protein LDL57_16285 PF06958 S-type Pyocin LDL57_16290 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 LDL57_16290 PF03515 Colicin-like bacteriocin tRNase domain LDL57_16295 PF01320 Colicin immunity protein / pyocin immunity protein LDL57_16325 PF01070 FMN-dependent dehydrogenase LDL57_16345 PF04917 Bacterial shufflon protein, N-terminal constant region LDL57_16420 PF00565 Staphylococcal nuclease homologue LDL57_16425 PF13438 Domain of unknown function (DUF4113) LDL57_16425 PF00817 impB/mucB/samB family LDL57_16425 PF11799 impB/mucB/samB family C-terminal domain LDL57_16425 PF11798 IMS family HHH motif LDL57_16435 PF01815 Rop protein LDL57_16450 PF04754 Putative transposase, YhgA-like LDL57_16460 PF00216 Bacterial DNA-binding protein LDL57_16465 PF10134 Replication initiator protein A LDL57_16470 PF13614 AAA domain LDL57_16490 PF09308 LuxQ, periplasmic LDL57_16490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDL57_16490 PF00072 Response regulator receiver domain LDL57_16490 PF00512 His Kinase A (phospho-acceptor) domain LDL57_16530 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LDL57_16685 PF00959 Phage lysozyme LDL57_16700 PF10668 Phage terminase small subunit LDL57_16700 PF03592 Terminase small subunit LDL57_16810 PF01385 Probable transposase LDL57_16810 PF07282 Putative transposase DNA-binding domain LDL57_16810 PF12323 Helix-turn-helix domain LDL57_16845 PF03544 Gram-negative bacterial TonB protein C-terminal LDL57_16865 PF10548 P22AR C-terminal domain LDL57_16865 PF02498 BRO family, N-terminal domain LDL57_16870 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LDL57_16870 PF00589 Phage integrase family LDL57_16885 PF08346 AntA/AntB antirepressor LDL57_16885 PF10548 P22AR C-terminal domain LDL57_16955 PF01751 Toprim domain LDL57_16955 PF01131 DNA topoisomerase LDL57_16975 PF08212 Lipocalin-like domain LDL57_16980 PF04917 Bacterial shufflon protein, N-terminal constant region LDL57_17000 PF01320 Colicin immunity protein / pyocin immunity protein LDL57_17005 PF03515 Colicin-like bacteriocin tRNase domain LDL57_17005 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 LDL57_17015 PF01464 Transglycosylase SLT domain LDL57_17025 PF10634 Fe2+ transport protein LDL57_17030 PF13473 Cupredoxin-like domain LDL57_17045 PF04261 Dyp-type peroxidase family LDL57_17105 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LDL57_17130 PF00239 Resolvase, N terminal domain LDL57_17130 PF02796 Helix-turn-helix domain of resolvase LDL57_17155 PF13614 AAA domain LDL57_17160 PF10134 Replication initiator protein A LDL57_17165 PF00216 Bacterial DNA-binding protein LDL57_17170 PF04754 Putative transposase, YhgA-like LDL57_17175 PF04352 ProQ/FINO family LDL57_17175 PF12602 Fertility inhibition protein N terminal LDL57_17180 PF04754 Putative transposase, YhgA-like LDL57_17190 PF00565 Staphylococcal nuclease homologue LDL57_17235 PF08212 Lipocalin-like domain LDL57_17240 PF04917 Bacterial shufflon protein, N-terminal constant region LDL57_17265 PF03513 Cloacin immunity protein LDL57_17270 PF03515 Colicin-like bacteriocin tRNase domain LDL57_17270 PF09000 Cytotoxic LDL57_17270 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 LDL57_17275 PF01320 Colicin immunity protein / pyocin immunity protein LDL57_17280 PF06958 S-type Pyocin LDL57_17295 PF01464 Transglycosylase SLT domain LDL57_17360 PF02796 Helix-turn-helix domain of resolvase LDL57_17360 PF00239 Resolvase, N terminal domain LDL57_17395 PF06381 Protein of unknown function (DUF1073) LDL57_17400 PF04221 RelB antitoxin LDL57_17410 PF02796 Helix-turn-helix domain of resolvase LDL57_17410 PF00239 Resolvase, N terminal domain LDL57_17415 PF17288 Terminase RNAseH like domain LDL57_17415 PF04466 Phage terminase large subunit LDL57_17445 PF01695 IstB-like ATP binding protein LDL57_17455 PF00149 Calcineurin-like phosphoesterase LDL57_17470 PF13614 AAA domain LDL57_17475 PF10134 Replication initiator protein A LDL57_17480 PF00216 Bacterial DNA-binding protein LDL57_17495 PF05154 TM2 domain LDL57_17500 PF00216 Bacterial DNA-binding protein LDL57_17510 PF13614 AAA domain LDL57_17530 PF00959 Phage lysozyme LDL57_17575 PF01381 Helix-turn-helix LDL57_17585 PF06381 Protein of unknown function (DUF1073) LDL57_17590 PF04754 Putative transposase, YhgA-like LDL57_17635 PF13018 Extended Signal Peptide of Type V secretion system LDL57_17635 PF03895 YadA-like membrane anchor domain LDL57_17635 PF05658 Head domain of trimeric autotransporter adhesin LDL57_17635 PF05662 Coiled stalk of trimeric autotransporter adhesin LDL57_17650 PF02796 Helix-turn-helix domain of resolvase LDL57_17650 PF00239 Resolvase, N terminal domain